Query 005235
Match_columns 707
No_of_seqs 846 out of 4383
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0650 WD40 repeat nucleolar 100.0 4E-146 8E-151 1149.8 39.0 594 110-706 112-733 (733)
2 PF08145 BOP1NT: BOP1NT (NUC16 100.0 2.5E-91 5.5E-96 687.3 15.0 257 129-385 1-260 (260)
3 KOG0271 Notchless-like WD40 re 100.0 8.3E-44 1.8E-48 359.1 27.8 333 325-706 93-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-41 1.4E-45 342.6 24.1 275 380-706 179-458 (459)
5 KOG0315 G-protein beta subunit 100.0 2E-37 4.2E-42 297.9 30.5 271 387-707 9-287 (311)
6 KOG0271 Notchless-like WD40 re 100.0 1.1E-37 2.3E-42 315.0 24.1 280 409-707 106-438 (480)
7 KOG0286 G-protein beta subunit 100.0 4.6E-35 9.9E-40 287.5 32.3 289 341-706 49-343 (343)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-34 2.6E-39 296.8 19.5 237 417-706 175-416 (459)
9 KOG0319 WD40-repeat-containing 100.0 2.8E-33 6E-38 303.4 27.5 403 264-707 85-576 (775)
10 KOG0291 WD40-repeat-containing 100.0 3.2E-32 7E-37 295.1 35.0 359 290-707 96-549 (893)
11 KOG0279 G protein beta subunit 100.0 3.4E-32 7.5E-37 266.0 31.2 271 389-707 29-312 (315)
12 KOG0263 Transcription initiati 100.0 1.4E-33 3.1E-38 309.0 24.1 275 410-707 370-648 (707)
13 KOG0318 WD40 repeat stress pro 100.0 1.2E-30 2.5E-35 273.6 36.4 308 383-707 197-559 (603)
14 KOG0295 WD40 repeat-containing 100.0 4.4E-32 9.6E-37 273.4 22.5 268 387-706 119-404 (406)
15 KOG0284 Polyadenylation factor 100.0 1.5E-32 3.2E-37 280.2 17.2 272 417-706 96-378 (464)
16 KOG0319 WD40-repeat-containing 100.0 7.3E-31 1.6E-35 284.7 30.9 389 290-706 187-617 (775)
17 KOG0318 WD40 repeat stress pro 100.0 9.5E-30 2.1E-34 266.7 36.6 352 290-707 185-601 (603)
18 KOG0645 WD40 repeat protein [G 100.0 4.6E-30 1E-34 250.1 31.8 287 343-707 10-310 (312)
19 cd00200 WD40 WD40 domain, foun 100.0 1.2E-29 2.6E-34 260.5 37.0 265 389-706 22-289 (289)
20 KOG0263 Transcription initiati 100.0 4.3E-31 9.4E-36 289.6 26.7 269 383-695 385-702 (707)
21 KOG0285 Pleiotropic regulator 100.0 1.2E-30 2.6E-35 262.0 27.4 271 389-706 164-437 (460)
22 KOG0273 Beta-transducin family 100.0 6.4E-30 1.4E-34 265.1 29.4 302 385-707 188-522 (524)
23 KOG0286 G-protein beta subunit 100.0 2E-29 4.2E-34 248.0 30.1 245 412-706 49-301 (343)
24 KOG0279 G protein beta subunit 100.0 2.3E-29 5E-34 246.2 28.1 246 412-707 9-261 (315)
25 KOG0291 WD40-repeat-containing 100.0 1.3E-28 2.9E-33 267.2 35.4 317 383-707 272-611 (893)
26 PLN00181 protein SPA1-RELATED; 100.0 1.9E-28 4E-33 293.0 40.2 282 383-707 490-792 (793)
27 KOG0282 mRNA splicing factor [ 100.0 2.4E-30 5.2E-35 269.4 18.9 275 379-706 218-503 (503)
28 KOG0273 Beta-transducin family 100.0 2.1E-29 4.7E-34 261.2 25.6 279 411-707 172-481 (524)
29 KOG0281 Beta-TrCP (transducin 100.0 1.1E-30 2.3E-35 261.2 14.4 264 389-707 208-476 (499)
30 KOG0265 U5 snRNP-specific prot 100.0 3.3E-29 7.2E-34 247.3 23.8 287 281-650 33-335 (338)
31 KOG0266 WD40 repeat-containing 100.0 9.1E-29 2E-33 276.5 30.7 272 383-706 166-452 (456)
32 KOG0315 G-protein beta subunit 100.0 2.3E-28 5E-33 235.5 28.0 286 302-686 10-308 (311)
33 KOG0296 Angio-associated migra 100.0 2.6E-28 5.7E-33 246.4 29.7 298 389-707 77-397 (399)
34 KOG0313 Microtubule binding pr 100.0 3.5E-28 7.5E-33 246.5 28.8 270 388-706 115-416 (423)
35 KOG0276 Vesicle coat complex C 100.0 1.1E-28 2.3E-33 262.9 26.2 263 390-704 27-295 (794)
36 KOG0306 WD40-repeat-containing 100.0 2.2E-28 4.8E-33 265.3 28.9 266 387-706 384-662 (888)
37 KOG0265 U5 snRNP-specific prot 100.0 4.2E-28 9E-33 239.5 26.2 269 384-704 55-334 (338)
38 KOG0293 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 250.8 23.2 269 384-706 232-511 (519)
39 KOG0292 Vesicle coat complex C 100.0 1E-28 2.2E-33 271.2 22.2 241 417-707 9-279 (1202)
40 KOG0284 Polyadenylation factor 100.0 6E-29 1.3E-33 253.9 17.3 259 389-653 109-380 (464)
41 KOG0295 WD40 repeat-containing 100.0 2.2E-28 4.8E-33 246.8 20.0 278 288-651 101-404 (406)
42 KOG0282 mRNA splicing factor [ 100.0 2.9E-28 6.3E-33 253.9 20.9 280 288-651 207-503 (503)
43 KOG0293 WD40 repeat-containing 100.0 1.6E-28 3.5E-33 250.6 17.7 278 290-651 219-511 (519)
44 KOG0277 Peroxisomal targeting 100.0 1.3E-27 2.9E-32 230.9 21.9 262 395-706 35-307 (311)
45 KOG0266 WD40 repeat-containing 100.0 7.7E-27 1.7E-31 261.0 30.5 244 417-707 159-408 (456)
46 PLN00181 protein SPA1-RELATED; 100.0 3.6E-26 7.7E-31 273.4 37.3 270 397-707 457-737 (793)
47 KOG0276 Vesicle coat complex C 100.0 3.2E-27 7E-32 251.6 24.5 237 417-706 13-255 (794)
48 cd00200 WD40 WD40 domain, foun 100.0 4.4E-26 9.4E-31 233.9 31.7 222 389-651 64-289 (289)
49 KOG0285 Pleiotropic regulator 100.0 4.5E-27 9.8E-32 236.4 21.8 235 417-706 151-387 (460)
50 KOG0268 Sof1-like rRNA process 100.0 9.6E-28 2.1E-32 241.9 16.1 265 384-706 75-343 (433)
51 KOG0772 Uncharacterized conser 100.0 1.1E-26 2.3E-31 243.0 23.8 279 388-705 179-484 (641)
52 KOG0316 Conserved WD40 repeat- 100.0 3.2E-26 6.9E-31 219.1 24.1 267 383-705 24-296 (307)
53 KOG1407 WD40 repeat protein [F 99.9 1.1E-25 2.4E-30 218.5 27.2 267 386-706 30-309 (313)
54 KOG0306 WD40-repeat-containing 99.9 2.3E-25 4.9E-30 242.1 32.5 299 386-706 159-620 (888)
55 KOG0292 Vesicle coat complex C 99.9 3.2E-26 6.8E-31 251.8 25.6 265 389-706 22-319 (1202)
56 KOG0645 WD40 repeat protein [G 99.9 9.8E-26 2.1E-30 220.0 25.7 205 489-706 9-223 (312)
57 KOG0643 Translation initiation 99.9 1.1E-25 2.3E-30 219.1 24.6 284 289-653 4-317 (327)
58 KOG0281 Beta-TrCP (transducin 99.9 2.9E-27 6.4E-32 236.6 14.1 250 321-654 216-478 (499)
59 KOG0278 Serine/threonine kinas 99.9 2.4E-26 5.1E-31 221.6 18.9 265 386-706 27-295 (334)
60 KOG0275 Conserved WD40 repeat- 99.9 7.8E-27 1.7E-31 231.5 14.9 277 377-706 214-507 (508)
61 KOG0316 Conserved WD40 repeat- 99.9 3.2E-25 6.9E-30 212.2 21.9 241 412-707 11-256 (307)
62 KOG0305 Anaphase promoting com 99.9 1.1E-24 2.3E-29 236.1 28.2 263 389-707 189-460 (484)
63 KOG0650 WD40 repeat nucleolar 99.9 7.7E-26 1.7E-30 240.3 18.0 379 198-650 298-732 (733)
64 KOG0289 mRNA splicing factor [ 99.9 1E-24 2.3E-29 224.4 25.5 276 380-707 224-505 (506)
65 KOG0973 Histone transcription 99.9 2.3E-24 4.9E-29 244.2 29.7 285 388-707 25-354 (942)
66 PTZ00421 coronin; Provisional 99.9 7.6E-24 1.7E-28 236.8 33.6 248 418-707 21-289 (493)
67 KOG0643 Translation initiation 99.9 1.5E-24 3.2E-29 211.2 24.1 275 384-705 18-314 (327)
68 KOG0288 WD40 repeat protein Ti 99.9 8.3E-26 1.8E-30 231.4 15.6 264 389-706 188-459 (459)
69 KOG0274 Cdc4 and related F-box 99.9 3.4E-24 7.3E-29 240.1 29.3 259 388-707 218-481 (537)
70 KOG0296 Angio-associated migra 99.9 3.4E-24 7.4E-29 216.8 25.7 312 288-652 57-397 (399)
71 KOG1539 WD repeat protein [Gen 99.9 8.6E-24 1.9E-28 232.4 30.3 304 389-707 215-605 (910)
72 KOG0275 Conserved WD40 repeat- 99.9 2.8E-25 6E-30 220.5 15.4 284 286-650 207-506 (508)
73 PTZ00420 coronin; Provisional 99.9 3.1E-23 6.7E-28 233.1 34.0 257 393-691 49-319 (568)
74 KOG0283 WD40 repeat-containing 99.9 4.3E-24 9.3E-29 236.7 26.2 272 417-707 267-575 (712)
75 KOG0300 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 212.1 22.7 293 389-707 161-475 (481)
76 KOG0647 mRNA export protein (c 99.9 1.3E-23 2.9E-28 207.9 25.1 265 380-699 32-315 (347)
77 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.4E-27 228.7 35.1 220 473-707 52-292 (568)
78 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-22 3.1E-27 202.5 30.6 267 384-706 22-301 (311)
79 KOG0278 Serine/threonine kinas 99.9 8.9E-25 1.9E-29 210.7 14.2 228 386-653 69-297 (334)
80 PTZ00421 coronin; Provisional 99.9 3E-22 6.6E-27 223.9 35.9 234 388-653 32-290 (493)
81 KOG0641 WD40 repeat protein [G 99.9 4.2E-22 9.2E-27 189.5 30.8 280 384-707 40-348 (350)
82 KOG0308 Conserved WD40 repeat- 99.9 6.5E-24 1.4E-28 227.9 19.8 279 378-706 27-325 (735)
83 KOG0264 Nucleosome remodeling 99.9 2.7E-23 5.9E-28 216.0 23.6 264 413-707 120-403 (422)
84 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-22 2E-26 206.6 35.7 263 389-707 2-278 (300)
85 KOG2106 Uncharacterized conser 99.9 1.3E-21 2.7E-26 204.8 33.2 289 395-706 177-519 (626)
86 KOG0283 WD40 repeat-containing 99.9 3E-23 6.6E-28 230.0 22.0 184 389-611 381-577 (712)
87 KOG0313 Microtubule binding pr 99.9 1.2E-22 2.6E-27 206.4 24.3 246 408-707 96-375 (423)
88 KOG0277 Peroxisomal targeting 99.9 1E-22 2.2E-27 197.2 22.3 200 492-707 58-264 (311)
89 KOG0640 mRNA cleavage stimulat 99.9 1E-22 2.2E-27 201.7 22.6 265 416-706 111-424 (430)
90 KOG1036 Mitotic spindle checkp 99.9 5.8E-22 1.3E-26 197.2 26.3 259 384-698 21-294 (323)
91 KOG1063 RNA polymerase II elon 99.9 2.8E-22 6E-27 216.8 25.7 307 387-707 205-647 (764)
92 KOG2055 WD40 repeat protein [G 99.9 3E-22 6.5E-27 207.9 24.8 278 384-707 221-511 (514)
93 KOG0310 Conserved WD40 repeat- 99.9 5E-22 1.1E-26 207.9 26.4 267 417-704 26-305 (487)
94 KOG1539 WD repeat protein [Gen 99.9 1.1E-21 2.4E-26 216.0 30.2 302 384-706 252-646 (910)
95 KOG0301 Phospholipase A2-activ 99.9 4.8E-22 1E-26 215.2 25.1 255 389-706 26-286 (745)
96 KOG0299 U3 snoRNP-associated p 99.9 6.9E-22 1.5E-26 205.4 25.2 262 389-702 155-450 (479)
97 KOG2106 Uncharacterized conser 99.9 2E-20 4.3E-25 195.9 36.2 304 390-707 259-625 (626)
98 KOG0640 mRNA cleavage stimulat 99.9 7.7E-23 1.7E-27 202.6 16.8 228 389-652 185-425 (430)
99 KOG0308 Conserved WD40 repeat- 99.9 1.5E-22 3.3E-27 217.4 20.3 305 339-707 65-392 (735)
100 KOG1446 Histone H3 (Lys4) meth 99.9 6.4E-21 1.4E-25 190.7 30.5 246 413-707 9-261 (311)
101 KOG1408 WD40 repeat protein [F 99.9 1.5E-21 3.2E-26 210.7 27.4 302 387-707 335-712 (1080)
102 KOG0641 WD40 repeat protein [G 99.9 4E-21 8.6E-26 182.9 27.1 261 409-707 24-302 (350)
103 KOG0264 Nucleosome remodeling 99.9 4.3E-22 9.2E-27 207.2 22.3 243 380-653 129-404 (422)
104 KOG0294 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 192.7 26.1 229 384-653 49-281 (362)
105 KOG0310 Conserved WD40 repeat- 99.9 8.4E-22 1.8E-26 206.2 23.6 256 390-653 42-309 (487)
106 KOG0639 Transducin-like enhanc 99.9 3.2E-22 7E-27 208.7 19.8 264 389-707 432-703 (705)
107 KOG0305 Anaphase promoting com 99.9 6.4E-22 1.4E-26 214.6 22.7 228 384-653 225-461 (484)
108 KOG0274 Cdc4 and related F-box 99.9 8.4E-22 1.8E-26 220.9 24.0 231 417-707 208-440 (537)
109 KOG1407 WD40 repeat protein [F 99.9 2.2E-21 4.7E-26 188.8 23.2 236 417-704 20-257 (313)
110 KOG0646 WD40 repeat protein [G 99.9 3.7E-21 8E-26 200.4 25.6 273 390-707 9-306 (476)
111 KOG0289 mRNA splicing factor [ 99.9 2.8E-21 6.1E-26 199.2 24.3 237 418-706 220-460 (506)
112 KOG0299 U3 snoRNP-associated p 99.9 8.2E-22 1.8E-26 204.9 20.1 260 416-707 141-409 (479)
113 KOG0647 mRNA export protein (c 99.9 4E-21 8.7E-26 190.4 23.9 243 417-706 27-279 (347)
114 KOG2096 WD40 repeat protein [G 99.9 1.8E-20 4E-25 186.5 26.6 279 386-705 96-399 (420)
115 KOG0973 Histone transcription 99.9 7.8E-21 1.7E-25 215.7 26.4 292 288-653 5-355 (942)
116 KOG1332 Vesicle coat complex C 99.9 3.3E-21 7.3E-26 185.8 19.6 245 417-706 11-284 (299)
117 KOG1274 WD40 repeat protein [G 99.9 2.9E-20 6.2E-25 207.1 28.0 257 387-702 24-294 (933)
118 KOG0294 WD40 repeat-containing 99.9 4.6E-20 1E-24 183.8 26.0 231 455-707 40-280 (362)
119 KOG1408 WD40 repeat protein [F 99.9 1.5E-20 3.2E-25 203.1 23.2 257 391-653 395-713 (1080)
120 KOG2445 Nuclear pore complex c 99.9 4.6E-20 9.9E-25 183.3 24.0 251 417-706 13-316 (361)
121 KOG0300 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 187.3 19.7 260 390-707 126-427 (481)
122 KOG0772 Uncharacterized conser 99.9 9.9E-21 2.1E-25 198.6 19.3 208 489-707 162-393 (641)
123 KOG1273 WD40 repeat protein [G 99.9 3.3E-20 7.2E-25 184.5 22.0 273 383-706 30-320 (405)
124 KOG0288 WD40 repeat protein Ti 99.9 3.9E-21 8.5E-26 197.3 14.5 240 417-707 175-416 (459)
125 KOG0321 WD40 repeat-containing 99.9 5.4E-20 1.2E-24 197.6 23.4 279 381-707 57-390 (720)
126 KOG0269 WD40 repeat-containing 99.9 1.7E-20 3.8E-25 205.2 19.6 268 417-703 39-335 (839)
127 KOG0639 Transducin-like enhanc 99.9 9.7E-21 2.1E-25 197.8 16.0 248 409-706 411-661 (705)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.7E-18 3.8E-23 181.7 32.8 244 390-688 45-300 (300)
129 KOG2048 WD40 repeat protein [G 99.8 6.1E-19 1.3E-23 191.0 29.1 269 383-704 32-315 (691)
130 KOG0646 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 189.6 22.3 250 390-691 52-332 (476)
131 KOG1036 Mitotic spindle checkp 99.8 5.8E-19 1.2E-23 175.9 25.2 242 417-707 13-261 (323)
132 KOG0267 Microtubule severing p 99.8 2.4E-21 5.2E-26 210.4 8.6 200 490-707 24-225 (825)
133 KOG1063 RNA polymerase II elon 99.8 7.4E-19 1.6E-23 190.5 27.1 377 288-706 184-697 (764)
134 KOG0269 WD40 repeat-containing 99.8 4.9E-20 1.1E-24 201.8 18.1 236 377-650 89-337 (839)
135 KOG0267 Microtubule severing p 99.8 4.6E-21 1E-25 208.2 9.9 252 390-699 6-259 (825)
136 KOG2919 Guanine nucleotide-bin 99.8 1.7E-19 3.6E-24 180.2 20.0 265 418-699 50-361 (406)
137 KOG0302 Ribosome Assembly prot 99.8 3.9E-19 8.4E-24 180.8 22.4 261 417-702 151-433 (440)
138 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-19 1E-23 185.1 23.1 272 399-690 13-305 (673)
139 KOG4283 Transcription-coupled 99.8 1.5E-18 3.2E-23 171.4 24.8 296 349-706 26-363 (397)
140 KOG2096 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 174.3 23.6 251 417-706 86-358 (420)
141 KOG0307 Vesicle coat complex C 99.8 4.2E-20 9.1E-25 210.5 14.6 268 395-707 36-326 (1049)
142 KOG0270 WD40 repeat-containing 99.8 9.6E-19 2.1E-23 181.5 23.3 224 468-707 195-448 (463)
143 KOG1274 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 192.3 26.8 239 417-707 13-261 (933)
144 KOG1332 Vesicle coat complex C 99.8 1E-18 2.2E-23 168.8 20.2 229 387-651 22-284 (299)
145 KOG0268 Sof1-like rRNA process 99.8 1.4E-19 2.9E-24 183.2 14.4 234 417-706 66-300 (433)
146 KOG2048 WD40 repeat protein [G 99.8 3.1E-17 6.8E-22 177.9 32.8 330 325-707 95-504 (691)
147 KOG1007 WD repeat protein TSSC 99.8 2.3E-18 5E-23 169.7 21.5 276 396-705 38-358 (370)
148 KOG0321 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 187.6 20.9 251 389-653 113-391 (720)
149 KOG4283 Transcription-coupled 99.8 3.6E-18 7.8E-23 168.7 22.6 216 417-655 43-278 (397)
150 KOG2919 Guanine nucleotide-bin 99.8 2.4E-18 5.1E-23 172.0 19.2 225 388-644 123-361 (406)
151 KOG0302 Ribosome Assembly prot 99.8 1.5E-18 3.2E-23 176.7 17.9 204 490-707 147-377 (440)
152 KOG0301 Phospholipase A2-activ 99.8 3.7E-18 8.1E-23 185.2 21.9 215 389-653 72-288 (745)
153 KOG2445 Nuclear pore complex c 99.8 2.8E-17 6E-22 163.6 25.4 255 384-674 21-333 (361)
154 KOG1273 WD40 repeat protein [G 99.8 9.9E-18 2.1E-22 167.0 20.4 243 420-706 26-278 (405)
155 KOG2055 WD40 repeat protein [G 99.8 1.4E-17 3E-22 173.5 20.9 243 417-704 213-463 (514)
156 KOG4328 WD40 protein [Function 99.8 8.7E-18 1.9E-22 174.9 17.1 205 490-706 182-397 (498)
157 PRK11028 6-phosphogluconolacto 99.8 9.8E-16 2.1E-20 164.8 33.9 271 391-707 5-303 (330)
158 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-15 4.5E-20 162.4 36.3 275 384-707 73-358 (466)
159 KOG1445 Tumor-specific antigen 99.8 8.9E-17 1.9E-21 172.1 22.9 143 386-529 90-250 (1012)
160 KOG4328 WD40 protein [Function 99.7 2E-16 4.3E-21 164.9 23.8 270 389-706 201-493 (498)
161 KOG4227 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 161.6 22.1 300 336-706 45-385 (609)
162 KOG1517 Guanine nucleotide bin 99.7 3.3E-16 7.1E-21 176.4 26.3 284 389-706 1077-1379(1387)
163 KOG1188 WD40 repeat protein [G 99.7 1.3E-16 2.9E-21 160.9 20.1 277 389-706 41-344 (376)
164 KOG4378 Nuclear protein COP1 [ 99.7 8.2E-17 1.8E-21 168.5 18.9 258 432-707 4-279 (673)
165 KOG0270 WD40 repeat-containing 99.7 1.3E-16 2.8E-21 165.8 20.1 228 387-653 191-449 (463)
166 KOG1009 Chromatin assembly com 99.7 1.7E-16 3.7E-21 163.3 20.5 279 389-704 27-368 (434)
167 KOG1587 Cytoplasmic dynein int 99.7 8.2E-16 1.8E-20 171.6 27.0 268 398-707 222-515 (555)
168 KOG1538 Uncharacterized conser 99.7 3.9E-16 8.5E-21 168.0 22.7 248 398-653 33-293 (1081)
169 KOG1524 WD40 repeat-containing 99.7 2.9E-16 6.2E-21 165.8 20.4 253 417-704 14-282 (737)
170 KOG0322 G-protein beta subunit 99.7 1.2E-16 2.6E-21 156.1 15.3 256 389-651 26-321 (323)
171 KOG1963 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 161.0 33.6 308 388-707 72-537 (792)
172 KOG1034 Transcriptional repres 99.7 1.5E-15 3.2E-20 152.6 21.4 268 389-706 56-381 (385)
173 KOG1007 WD repeat protein TSSC 99.7 1.4E-15 2.9E-20 150.3 19.8 236 381-651 69-359 (370)
174 KOG0290 Conserved WD40 repeat- 99.7 3.2E-15 7E-20 147.9 22.1 250 408-707 35-317 (364)
175 KOG0642 Cell-cycle nuclear pro 99.7 7.6E-16 1.6E-20 164.4 17.4 239 383-652 301-560 (577)
176 PRK01742 tolB translocation pr 99.7 5.8E-15 1.2E-19 164.5 24.8 235 397-689 183-426 (429)
177 KOG1538 Uncharacterized conser 99.7 3.9E-15 8.4E-20 160.5 21.7 265 417-707 12-292 (1081)
178 COG2319 FOG: WD40 repeat [Gene 99.7 1.3E-13 2.7E-18 148.5 33.8 241 415-707 63-313 (466)
179 KOG0322 G-protein beta subunit 99.7 9.7E-16 2.1E-20 149.8 15.3 272 417-707 14-322 (323)
180 KOG2110 Uncharacterized conser 99.7 9.1E-14 2E-18 142.0 30.2 226 418-653 6-248 (391)
181 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.5E-19 144.0 21.9 258 406-699 83-357 (364)
182 KOG0307 Vesicle coat complex C 99.7 1.6E-15 3.4E-20 173.6 17.5 225 389-613 81-330 (1049)
183 PRK01742 tolB translocation pr 99.6 1.4E-14 3E-19 161.5 23.1 211 475-706 184-399 (429)
184 KOG0303 Actin-binding protein 99.6 8.2E-15 1.8E-19 150.3 19.3 202 490-707 77-293 (472)
185 KOG1034 Transcriptional repres 99.6 2.2E-15 4.7E-20 151.4 14.7 227 389-651 106-381 (385)
186 KOG4497 Uncharacterized conser 99.6 4.1E-14 8.8E-19 142.1 21.0 280 388-701 61-425 (447)
187 KOG2139 WD40 repeat protein [G 99.6 2.2E-13 4.8E-18 138.5 26.4 226 390-645 112-367 (445)
188 KOG2110 Uncharacterized conser 99.6 8.2E-14 1.8E-18 142.4 23.2 193 497-707 49-247 (391)
189 KOG0642 Cell-cycle nuclear pro 99.6 1.5E-14 3.3E-19 154.5 15.6 246 417-707 294-560 (577)
190 KOG1272 WD40-repeat-containing 99.6 3.6E-15 7.7E-20 155.7 10.3 263 384-700 137-401 (545)
191 PRK03629 tolB translocation pr 99.6 8.4E-13 1.8E-17 147.0 29.3 239 399-689 180-428 (429)
192 KOG0303 Actin-binding protein 99.6 2.3E-13 4.9E-18 139.8 22.0 204 417-652 81-293 (472)
193 KOG1963 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 148.8 27.4 309 384-707 24-374 (792)
194 KOG1188 WD40 repeat protein [G 99.6 5.6E-14 1.2E-18 142.1 17.0 187 507-707 41-241 (376)
195 KOG2111 Uncharacterized conser 99.6 8.7E-13 1.9E-17 132.6 25.3 239 419-707 7-255 (346)
196 KOG0771 Prolactin regulatory e 99.6 3.5E-14 7.5E-19 147.5 14.9 193 498-706 148-352 (398)
197 PRK11028 6-phosphogluconolacto 99.6 6E-12 1.3E-16 135.4 32.1 233 385-652 43-303 (330)
198 KOG0771 Prolactin regulatory e 99.6 5.9E-14 1.3E-18 145.8 15.6 194 421-654 148-355 (398)
199 PRK03629 tolB translocation pr 99.6 1.3E-12 2.8E-17 145.6 27.6 212 476-706 180-404 (429)
200 KOG0644 Uncharacterized conser 99.6 2E-14 4.2E-19 158.8 12.5 258 384-652 198-467 (1113)
201 KOG1240 Protein kinase contain 99.5 5E-13 1.1E-17 153.5 23.7 311 384-706 1057-1431(1431)
202 PRK04922 tolB translocation pr 99.5 1.4E-12 3.1E-17 145.5 27.0 234 398-688 184-432 (433)
203 KOG1587 Cytoplasmic dynein int 99.5 5.2E-13 1.1E-17 149.3 22.9 249 380-653 247-516 (555)
204 KOG1334 WD40 repeat protein [G 99.5 4.7E-14 1E-18 148.2 12.8 276 383-706 149-464 (559)
205 KOG1009 Chromatin assembly com 99.5 2.5E-13 5.5E-18 140.1 17.0 168 416-611 12-196 (434)
206 KOG2394 WD40 protein DMR-N9 [G 99.5 3.7E-13 8.1E-18 142.9 18.7 167 504-688 183-384 (636)
207 KOG1523 Actin-related protein 99.5 4E-13 8.7E-18 135.0 17.8 209 493-705 9-233 (361)
208 PRK05137 tolB translocation pr 99.5 7.6E-12 1.6E-16 139.9 30.0 204 398-643 182-396 (435)
209 PRK04922 tolB translocation pr 99.5 2.5E-12 5.4E-17 143.7 25.5 211 476-706 185-409 (433)
210 PRK05137 tolB translocation pr 99.5 4.5E-12 9.7E-17 141.7 27.1 203 476-698 183-396 (435)
211 KOG0649 WD40 repeat protein [G 99.5 1.4E-11 3.1E-16 119.5 26.4 269 387-705 21-313 (325)
212 KOG1523 Actin-related protein 99.5 1.9E-12 4.2E-17 130.1 20.9 202 417-653 10-236 (361)
213 KOG1524 WD40 repeat-containing 99.5 5.7E-13 1.2E-17 141.2 17.8 208 388-652 75-285 (737)
214 PRK02889 tolB translocation pr 99.5 2.8E-12 6.1E-17 142.9 24.5 207 476-700 177-392 (427)
215 PRK02889 tolB translocation pr 99.5 4.9E-12 1.1E-16 140.9 26.4 236 398-689 176-425 (427)
216 KOG2394 WD40 protein DMR-N9 [G 99.5 5.7E-13 1.2E-17 141.6 17.0 190 390-632 187-383 (636)
217 KOG1445 Tumor-specific antigen 99.5 8.7E-13 1.9E-17 141.9 18.0 204 488-705 73-290 (1012)
218 KOG2111 Uncharacterized conser 99.5 3.4E-11 7.3E-16 121.3 28.2 172 476-654 76-257 (346)
219 KOG0644 Uncharacterized conser 99.5 2.5E-13 5.4E-18 150.3 13.4 261 417-705 190-465 (1113)
220 KOG1517 Guanine nucleotide bin 99.5 4.7E-12 1E-16 143.5 23.4 244 419-707 1066-1332(1387)
221 KOG0649 WD40 repeat protein [G 99.5 8.3E-12 1.8E-16 121.1 21.7 237 419-707 12-273 (325)
222 KOG3881 Uncharacterized conser 99.5 3.6E-12 7.7E-17 131.3 20.0 235 417-653 55-320 (412)
223 KOG1272 WD40-repeat-containing 99.5 9.8E-14 2.1E-18 145.1 7.7 192 496-707 131-322 (545)
224 KOG2321 WD40 repeat protein [G 99.5 7.8E-12 1.7E-16 133.9 21.9 266 417-705 51-340 (703)
225 KOG1310 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 138.3 16.5 214 489-707 45-302 (758)
226 KOG4227 WD40 repeat protein [G 99.4 2.9E-12 6.4E-17 131.1 17.7 248 417-707 56-321 (609)
227 KOG2139 WD40 repeat protein [G 99.4 1.5E-11 3.2E-16 125.4 21.9 241 417-698 98-365 (445)
228 PF02239 Cytochrom_D1: Cytochr 99.4 9.9E-11 2.1E-15 127.2 29.1 278 384-706 44-345 (369)
229 PF10282 Lactonase: Lactonase, 99.4 1.8E-09 3.8E-14 117.0 38.3 275 391-707 2-321 (345)
230 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.5E-16 122.6 19.4 149 498-652 9-178 (194)
231 KOG4497 Uncharacterized conser 99.4 1.4E-11 3E-16 124.1 19.1 270 382-706 14-389 (447)
232 TIGR02800 propeller_TolB tol-p 99.4 6.8E-11 1.5E-15 131.3 25.9 205 477-700 172-386 (417)
233 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.2E-15 128.7 28.5 208 397-645 169-386 (417)
234 KOG0974 WD-repeat protein WDR6 99.4 1.5E-11 3.2E-16 140.2 19.4 189 500-707 93-287 (967)
235 PF08662 eIF2A: Eukaryotic tra 99.4 3.4E-11 7.3E-16 119.2 19.6 146 543-707 9-178 (194)
236 KOG2315 Predicted translation 99.4 1.8E-10 3.9E-15 123.8 26.3 247 397-653 104-390 (566)
237 KOG2315 Predicted translation 99.4 1.8E-09 4E-14 116.1 33.5 301 383-707 41-389 (566)
238 KOG1409 Uncharacterized conser 99.4 5.7E-11 1.2E-15 120.6 20.4 227 390-653 38-270 (404)
239 PRK00178 tolB translocation pr 99.4 3.8E-10 8.3E-15 126.0 29.3 237 399-689 180-428 (430)
240 KOG1334 WD40 repeat protein [G 99.4 5.2E-12 1.1E-16 133.0 12.8 283 290-651 137-464 (559)
241 KOG1240 Protein kinase contain 99.4 1.1E-10 2.3E-15 134.7 24.1 273 403-707 1034-1333(1431)
242 PRK04792 tolB translocation pr 99.4 3.8E-10 8.2E-15 126.4 28.3 237 399-689 199-447 (448)
243 KOG3881 Uncharacterized conser 99.3 6.3E-11 1.4E-15 122.2 19.9 214 389-634 116-342 (412)
244 PRK01029 tolB translocation pr 99.3 3.6E-10 7.9E-15 125.7 27.4 216 477-707 167-402 (428)
245 PRK00178 tolB translocation pr 99.3 5.9E-10 1.3E-14 124.5 27.2 204 477-699 181-394 (430)
246 PF10282 Lactonase: Lactonase, 99.3 4.5E-09 9.7E-14 113.9 32.9 253 376-652 37-321 (345)
247 KOG1354 Serine/threonine prote 99.3 1.8E-10 4E-15 116.9 20.2 310 383-705 32-431 (433)
248 PRK04792 tolB translocation pr 99.3 5.4E-10 1.2E-14 125.2 26.0 213 476-706 199-423 (448)
249 PRK01029 tolB translocation pr 99.3 1.4E-09 3.1E-14 120.9 28.6 241 398-690 165-426 (428)
250 COG2706 3-carboxymuconate cycl 99.3 6.9E-09 1.5E-13 107.0 31.0 267 397-706 15-319 (346)
251 PF02239 Cytochrom_D1: Cytochr 99.2 1.1E-08 2.5E-13 111.2 31.3 261 391-707 9-301 (369)
252 KOG1310 WD40 repeat protein [G 99.2 2.9E-11 6.3E-16 128.8 9.7 169 534-706 44-229 (758)
253 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.7E-14 118.2 22.1 141 505-652 69-219 (541)
254 KOG2321 WD40 repeat protein [G 99.2 2.4E-09 5.2E-14 115.2 23.8 256 389-653 65-343 (703)
255 COG5354 Uncharacterized protei 99.2 7.5E-09 1.6E-13 110.3 25.4 274 397-700 107-421 (561)
256 PF04762 IKI3: IKI3 family; I 99.2 2.8E-08 6.1E-13 119.4 33.1 306 389-706 88-454 (928)
257 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.2E-07 9.2E-12 97.2 34.6 259 398-707 27-329 (352)
258 COG2706 3-carboxymuconate cycl 99.1 4.1E-07 8.8E-12 94.1 32.9 254 374-652 38-320 (346)
259 KOG4547 WD40 repeat-containing 99.1 5.8E-09 1.3E-13 113.2 20.3 183 504-706 3-218 (541)
260 KOG2314 Translation initiation 99.1 2E-08 4.3E-13 107.9 23.6 250 398-700 282-559 (698)
261 TIGR03300 assembly_YfgL outer 99.1 1.5E-07 3.3E-12 103.2 30.4 286 388-705 65-376 (377)
262 PRK04043 tolB translocation pr 99.0 1.9E-07 4.1E-12 103.5 29.6 209 398-650 169-395 (419)
263 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.7E-14 128.6 13.8 245 395-701 2187-2439(2439)
264 COG4946 Uncharacterized protei 99.0 1.3E-07 2.8E-12 100.0 26.0 171 505-697 331-507 (668)
265 KOG1064 RAVE (regulator of V-A 99.0 3.6E-09 7.9E-14 125.9 15.2 188 490-707 2204-2397(2439)
266 KOG0309 Conserved WD40 repeat- 99.0 3.4E-09 7.3E-14 116.7 13.6 285 413-707 20-338 (1081)
267 KOG0280 Uncharacterized conser 99.0 8.1E-08 1.8E-12 96.2 22.0 197 496-705 123-330 (339)
268 PRK04043 tolB translocation pr 99.0 1.9E-07 4E-12 103.6 27.3 183 495-698 188-387 (419)
269 KOG0974 WD-repeat protein WDR6 99.0 1.3E-08 2.9E-13 116.5 17.0 185 385-610 96-288 (967)
270 PLN02919 haloacid dehalogenase 99.0 6.4E-07 1.4E-11 109.7 32.8 240 387-653 579-888 (1057)
271 PLN02919 haloacid dehalogenase 98.9 6.9E-07 1.5E-11 109.4 32.2 198 495-707 624-887 (1057)
272 KOG4714 Nucleoporin [Nuclear s 98.9 1.2E-08 2.6E-13 100.5 12.7 255 420-706 39-316 (319)
273 KOG2314 Translation initiation 98.9 1.5E-07 3.2E-12 101.3 21.7 238 419-707 212-524 (698)
274 KOG2041 WD40 repeat protein [G 98.9 2.6E-07 5.6E-12 101.7 23.2 266 417-704 14-333 (1189)
275 COG5354 Uncharacterized protei 98.9 6E-07 1.3E-11 96.1 24.9 281 401-706 15-346 (561)
276 KOG1354 Serine/threonine prote 98.9 1.3E-07 2.8E-12 96.5 18.4 255 417-706 25-357 (433)
277 TIGR03300 assembly_YfgL outer 98.8 1.1E-06 2.5E-11 96.3 26.6 247 388-650 105-376 (377)
278 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.2E-06 4.7E-11 91.8 27.1 217 396-619 75-338 (352)
279 COG4946 Uncharacterized protei 98.8 6.6E-06 1.4E-10 87.3 27.9 304 395-707 284-653 (668)
280 KOG1409 Uncharacterized conser 98.8 2.7E-07 5.8E-12 94.4 16.8 238 418-707 25-269 (404)
281 PF04762 IKI3: IKI3 family; I 98.7 9.7E-06 2.1E-10 97.8 30.9 236 417-706 75-377 (928)
282 KOG1912 WD40 repeat protein [G 98.7 3.1E-06 6.6E-11 94.5 23.5 307 386-707 77-550 (1062)
283 COG5170 CDC55 Serine/threonine 98.7 1.7E-07 3.7E-12 94.3 12.5 260 384-651 34-365 (460)
284 KOG4532 WD40-like repeat conta 98.7 2.5E-06 5.5E-11 84.7 20.1 239 396-643 50-322 (344)
285 PF08450 SGL: SMP-30/Gluconola 98.6 2.7E-05 5.8E-10 80.1 28.0 179 497-697 42-244 (246)
286 PF08450 SGL: SMP-30/Gluconola 98.6 8.6E-05 1.9E-09 76.3 30.8 217 386-641 10-244 (246)
287 KOG0280 Uncharacterized conser 98.6 8.1E-06 1.8E-10 82.2 20.7 178 495-689 70-264 (339)
288 KOG3914 WD repeat protein WDR4 98.6 7E-07 1.5E-11 93.2 13.7 150 542-707 65-222 (390)
289 KOG4532 WD40-like repeat conta 98.6 5.8E-06 1.3E-10 82.1 19.3 191 505-706 83-280 (344)
290 PF15492 Nbas_N: Neuroblastoma 98.6 5.8E-05 1.3E-09 76.3 26.4 228 422-707 2-258 (282)
291 KOG3914 WD repeat protein WDR4 98.5 2.4E-06 5.1E-11 89.4 16.3 158 383-577 69-232 (390)
292 KOG1920 IkappaB kinase complex 98.5 4.1E-05 8.8E-10 90.0 27.5 261 386-653 78-365 (1265)
293 KOG0309 Conserved WD40 repeat- 98.5 4.5E-07 9.8E-12 100.3 10.9 200 492-707 22-231 (1081)
294 KOG1912 WD40 repeat protein [G 98.5 8.4E-06 1.8E-10 91.1 20.6 234 419-706 17-302 (1062)
295 PRK11138 outer membrane biogen 98.5 0.00012 2.6E-09 80.8 29.8 291 388-707 69-393 (394)
296 KOG4190 Uncharacterized conser 98.5 1.4E-06 3.1E-11 93.4 13.5 270 388-705 747-1033(1034)
297 KOG1275 PAB-dependent poly(A) 98.5 3.4E-06 7.4E-11 95.8 16.1 183 505-706 146-340 (1118)
298 PF07433 DUF1513: Protein of u 98.5 0.00018 4E-09 74.7 27.7 231 418-700 5-278 (305)
299 KOG4190 Uncharacterized conser 98.5 8.4E-07 1.8E-11 95.1 10.5 157 490-653 780-948 (1034)
300 KOG2041 WD40 repeat protein [G 98.4 3.3E-06 7.2E-11 93.2 15.2 213 468-699 29-279 (1189)
301 KOG2695 WD40 repeat protein [G 98.4 8.4E-07 1.8E-11 90.8 8.8 169 412-621 207-386 (425)
302 KOG2695 WD40 repeat protein [G 98.4 8.9E-07 1.9E-11 90.6 8.9 130 520-653 235-376 (425)
303 PF13360 PQQ_2: PQQ-like domai 98.4 0.00028 6E-09 71.7 26.9 210 396-653 1-230 (238)
304 PF07433 DUF1513: Protein of u 98.3 9.9E-05 2.1E-09 76.7 21.9 200 496-707 6-246 (305)
305 PF11768 DUF3312: Protein of u 98.3 0.0013 2.7E-08 72.9 31.4 165 520-689 185-368 (545)
306 COG5170 CDC55 Serine/threonine 98.3 9.5E-06 2E-10 82.0 13.4 201 492-707 24-308 (460)
307 PRK11138 outer membrane biogen 98.3 0.00017 3.7E-09 79.7 24.8 248 388-650 120-391 (394)
308 PF13360 PQQ_2: PQQ-like domai 98.3 0.00022 4.8E-09 72.5 23.3 180 505-707 35-229 (238)
309 KOG4714 Nucleoporin [Nuclear s 98.3 9.8E-06 2.1E-10 80.3 12.2 175 390-569 49-255 (319)
310 PF00400 WD40: WD domain, G-be 98.3 2.7E-06 5.9E-11 60.5 6.3 38 665-706 2-39 (39)
311 PRK02888 nitrous-oxide reducta 98.2 0.00032 7E-09 79.2 25.4 194 502-707 200-403 (635)
312 PF11768 DUF3312: Protein of u 98.2 0.00015 3.3E-09 79.9 21.9 136 476-613 185-332 (545)
313 PF00400 WD40: WD domain, G-be 98.2 4.2E-06 9.2E-11 59.5 6.7 39 570-608 1-39 (39)
314 KOG2114 Vacuolar assembly/sort 98.2 0.00026 5.5E-09 80.7 22.5 217 382-626 29-259 (933)
315 PF15492 Nbas_N: Neuroblastoma 98.1 0.0006 1.3E-08 69.1 21.4 207 373-619 39-267 (282)
316 KOG2066 Vacuolar assembly/sort 98.1 4.8E-05 1E-09 85.9 15.0 142 494-653 39-187 (846)
317 KOG1275 PAB-dependent poly(A) 98.1 5.9E-05 1.3E-09 86.0 15.7 181 388-608 147-340 (1118)
318 COG0823 TolB Periplasmic compo 98.1 0.00015 3.3E-09 80.2 18.8 154 489-646 187-349 (425)
319 PRK02888 nitrous-oxide reducta 98.1 0.0009 1.9E-08 75.7 24.9 171 476-653 216-404 (635)
320 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0015 3.3E-08 71.0 25.9 268 395-696 20-345 (353)
321 PF04053 Coatomer_WDAD: Coatom 98.0 0.0011 2.4E-08 73.7 23.6 220 417-707 32-261 (443)
322 KOG3617 WD40 and TPR repeat-co 98.0 0.0004 8.6E-09 78.7 19.3 93 395-527 38-131 (1416)
323 KOG0882 Cyclophilin-related pe 98.0 6.3E-05 1.4E-09 79.7 12.3 230 384-619 16-313 (558)
324 KOG1920 IkappaB kinase complex 98.0 0.00035 7.7E-09 82.4 19.4 197 494-707 68-321 (1265)
325 COG0823 TolB Periplasmic compo 98.0 0.00037 8E-09 77.2 18.7 167 398-601 218-390 (425)
326 KOG1832 HIV-1 Vpr-binding prot 97.9 5.5E-06 1.2E-10 93.5 3.7 189 417-656 1101-1294(1516)
327 KOG1008 Uncharacterized conser 97.9 5E-06 1.1E-10 91.4 3.1 204 417-654 56-276 (783)
328 KOG1645 RING-finger-containing 97.9 0.00071 1.5E-08 71.2 17.5 232 380-650 198-458 (463)
329 KOG0882 Cyclophilin-related pe 97.8 0.00016 3.4E-09 76.8 11.8 207 492-707 7-230 (558)
330 KOG2066 Vacuolar assembly/sort 97.8 0.00052 1.1E-08 77.9 16.5 144 385-569 80-234 (846)
331 KOG2114 Vacuolar assembly/sort 97.8 0.0024 5.2E-08 73.1 21.1 155 497-652 68-242 (933)
332 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.036 7.8E-07 55.6 26.7 293 386-707 21-350 (354)
333 PF03178 CPSF_A: CPSF A subuni 97.8 0.0064 1.4E-07 65.2 23.7 189 506-704 42-261 (321)
334 KOG1832 HIV-1 Vpr-binding prot 97.7 4.6E-05 1E-09 86.3 5.5 152 490-654 1097-1256(1516)
335 COG3386 Gluconolactonase [Carb 97.6 0.026 5.6E-07 59.8 24.4 184 494-698 65-275 (307)
336 PF14583 Pectate_lyase22: Olig 97.6 0.023 4.9E-07 61.2 23.7 264 384-652 43-380 (386)
337 KOG3617 WD40 and TPR repeat-co 97.6 0.00028 6E-09 79.9 9.6 119 537-658 13-136 (1416)
338 KOG1008 Uncharacterized conser 97.5 3.2E-05 7E-10 85.2 1.6 200 494-707 56-274 (783)
339 KOG3621 WD40 repeat-containing 97.5 0.0073 1.6E-07 68.0 19.7 156 380-569 37-198 (726)
340 PF00780 CNH: CNH domain; Int 97.5 0.15 3.2E-06 53.1 29.0 240 387-674 6-267 (275)
341 PF14583 Pectate_lyase22: Olig 97.5 0.017 3.7E-07 62.1 21.6 289 404-705 16-378 (386)
342 cd00216 PQQ_DH Dehydrogenases 97.5 0.095 2.1E-06 59.7 29.4 254 389-653 62-424 (488)
343 PF08596 Lgl_C: Lethal giant l 97.5 0.02 4.2E-07 63.0 22.6 264 419-697 3-325 (395)
344 PF04841 Vps16_N: Vps16, N-ter 97.5 0.11 2.4E-06 57.7 28.7 195 399-634 62-270 (410)
345 COG3391 Uncharacterized conser 97.5 0.12 2.6E-06 56.8 29.0 250 400-653 13-283 (381)
346 PF04053 Coatomer_WDAD: Coatom 97.5 0.0032 6.9E-08 70.1 16.3 182 492-696 30-213 (443)
347 PF03178 CPSF_A: CPSF A subuni 97.5 0.061 1.3E-06 57.6 25.9 215 398-650 2-262 (321)
348 PF06977 SdiA-regulated: SdiA- 97.4 0.082 1.8E-06 54.2 25.0 205 490-705 17-247 (248)
349 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.18 3.8E-06 55.7 29.0 259 387-652 36-359 (418)
350 PF06977 SdiA-regulated: SdiA- 97.4 0.051 1.1E-06 55.8 22.4 196 381-607 27-247 (248)
351 KOG1645 RING-finger-containing 97.4 0.0013 2.7E-08 69.4 10.7 94 537-631 191-289 (463)
352 PF08553 VID27: VID27 cytoplas 97.3 0.012 2.7E-07 69.0 19.5 149 385-567 490-646 (794)
353 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.051 1.1E-06 59.1 23.2 238 396-640 61-344 (353)
354 COG3391 Uncharacterized conser 97.3 0.11 2.3E-06 57.2 25.6 216 380-635 78-310 (381)
355 PF02897 Peptidase_S9_N: Proly 97.2 0.26 5.6E-06 54.7 28.4 212 395-636 147-383 (414)
356 PF06433 Me-amine-dh_H: Methyl 97.2 0.093 2E-06 55.6 22.8 191 395-621 115-330 (342)
357 COG3386 Gluconolactonase [Carb 97.2 0.11 2.3E-06 55.2 23.4 222 383-642 32-275 (307)
358 KOG3621 WD40 repeat-containing 97.2 0.0022 4.8E-08 72.0 10.8 112 586-705 39-151 (726)
359 PF08553 VID27: VID27 cytoplas 97.2 0.037 8E-07 65.2 21.3 131 559-705 503-644 (794)
360 PF04841 Vps16_N: Vps16, N-ter 97.2 0.14 3.1E-06 56.7 25.2 165 476-652 62-245 (410)
361 KOG1897 Damage-specific DNA bi 97.1 0.32 6.9E-06 57.3 27.3 294 389-704 549-894 (1096)
362 PF00780 CNH: CNH domain; Int 97.1 0.27 5.9E-06 51.1 25.5 186 494-707 35-254 (275)
363 PF02897 Peptidase_S9_N: Proly 97.1 0.26 5.6E-06 54.7 26.7 153 499-652 174-356 (414)
364 KOG4640 Anaphase-promoting com 97.1 0.0023 5E-08 71.1 9.4 94 539-633 20-115 (665)
365 KOG4499 Ca2+-binding protein R 96.9 0.33 7.1E-06 48.3 22.0 144 496-642 110-274 (310)
366 PRK13616 lipoprotein LpqB; Pro 96.9 0.057 1.2E-06 62.5 20.0 185 495-703 350-563 (591)
367 COG3490 Uncharacterized protei 96.9 0.18 4E-06 51.5 20.7 216 406-653 56-310 (366)
368 cd00216 PQQ_DH Dehydrogenases 96.9 0.32 6.9E-06 55.4 25.6 219 389-621 111-434 (488)
369 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.37 8E-06 48.7 22.2 162 402-610 2-165 (354)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 1.3 2.9E-05 50.8 31.6 191 389-616 70-338 (527)
371 smart00320 WD40 WD40 repeats. 96.8 0.0027 5.8E-08 42.8 5.2 37 666-706 4-40 (40)
372 smart00320 WD40 WD40 repeats. 96.8 0.0038 8.2E-08 42.0 6.0 39 570-608 2-40 (40)
373 PRK13616 lipoprotein LpqB; Pro 96.8 0.33 7.2E-06 56.3 24.6 147 496-648 398-563 (591)
374 KOG1897 Damage-specific DNA bi 96.8 1 2.2E-05 53.3 27.7 301 386-706 267-611 (1096)
375 PF06433 Me-amine-dh_H: Methyl 96.6 0.047 1E-06 57.8 14.6 197 355-578 114-330 (342)
376 PF14870 PSII_BNR: Photosynthe 96.5 1.5 3.2E-05 46.4 26.2 183 497-702 64-255 (302)
377 PF10647 Gmad1: Lipoprotein Lp 96.5 0.15 3.3E-06 52.6 17.4 154 541-699 25-186 (253)
378 PF08596 Lgl_C: Lethal giant l 96.4 0.25 5.5E-06 54.3 19.1 195 417-644 86-327 (395)
379 KOG4640 Anaphase-promoting com 96.4 0.014 3.1E-07 65.0 9.2 93 493-590 19-115 (665)
380 KOG2395 Protein involved in va 96.3 0.1 2.2E-06 57.4 15.0 150 386-568 343-500 (644)
381 PF15390 DUF4613: Domain of un 96.3 0.29 6.3E-06 54.8 18.5 150 494-651 19-184 (671)
382 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.35 7.5E-06 42.8 14.5 100 583-703 2-109 (111)
383 KOG2444 WD40 repeat protein [G 96.0 0.0086 1.9E-07 59.1 4.7 139 553-707 33-176 (238)
384 KOG2395 Protein involved in va 96.0 0.3 6.6E-06 53.8 16.7 134 550-698 344-491 (644)
385 KOG2079 Vacuolar assembly/sort 95.9 0.023 5.1E-07 66.8 8.5 104 591-706 98-201 (1206)
386 PF10168 Nup88: Nuclear pore c 95.9 2 4.3E-05 50.9 24.5 31 539-569 146-180 (717)
387 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.56 1.2E-05 41.5 14.8 100 497-605 2-109 (111)
388 PRK10115 protease 2; Provision 95.8 3.7 8.1E-05 48.8 26.4 197 496-705 128-341 (686)
389 PRK10115 protease 2; Provision 95.7 6.4 0.00014 46.8 31.6 151 498-652 175-343 (686)
390 PF10647 Gmad1: Lipoprotein Lp 95.6 0.73 1.6E-05 47.6 17.6 147 496-645 25-187 (253)
391 PF14870 PSII_BNR: Photosynthe 95.6 2.2 4.7E-05 45.2 21.0 155 537-705 142-301 (302)
392 PF05694 SBP56: 56kDa selenium 95.5 3.7 8E-05 45.1 22.6 195 390-617 90-349 (461)
393 KOG4441 Proteins containing BT 95.5 0.45 9.7E-06 55.1 16.8 220 385-648 282-536 (571)
394 PF12234 Rav1p_C: RAVE protein 95.4 0.41 8.8E-06 55.3 16.0 128 574-706 23-154 (631)
395 COG3490 Uncharacterized protei 95.3 1.4 3E-05 45.4 17.1 104 539-642 67-180 (366)
396 KOG2079 Vacuolar assembly/sort 95.1 0.076 1.7E-06 62.7 8.8 99 551-652 99-202 (1206)
397 COG3204 Uncharacterized protei 95.0 3 6.4E-05 43.3 19.0 156 491-650 82-260 (316)
398 PRK13684 Ycf48-like protein; P 95.0 6.3 0.00014 42.5 29.4 155 537-706 170-329 (334)
399 TIGR02604 Piru_Ver_Nterm putat 94.7 1.1 2.3E-05 49.1 16.6 146 495-644 14-204 (367)
400 PF05694 SBP56: 56kDa selenium 94.6 8.8 0.00019 42.3 23.2 188 503-697 138-392 (461)
401 KOG4499 Ca2+-binding protein R 94.6 4.3 9.3E-05 40.7 18.1 102 495-598 158-272 (310)
402 TIGR02604 Piru_Ver_Nterm putat 94.6 1 2.2E-05 49.3 15.8 101 540-642 14-142 (367)
403 PF05096 Glu_cyclase_2: Glutam 94.6 6.5 0.00014 40.5 23.9 189 409-641 34-249 (264)
404 PF08728 CRT10: CRT10; InterP 94.4 1.5 3.3E-05 51.1 17.2 146 551-707 49-245 (717)
405 PF05096 Glu_cyclase_2: Glutam 94.4 7.2 0.00016 40.2 22.2 110 497-612 47-159 (264)
406 PF15390 DUF4613: Domain of un 94.2 3.3 7.3E-05 46.7 18.4 116 491-610 53-186 (671)
407 TIGR03074 PQQ_membr_DH membran 94.2 10 0.00022 45.4 24.0 143 506-653 260-477 (764)
408 PF07995 GSDH: Glucose / Sorbo 94.1 10 0.00022 40.8 26.9 154 494-648 113-330 (331)
409 PF08145 BOP1NT: BOP1NT (NUC16 94.0 0.011 2.5E-07 59.7 -0.8 64 198-273 169-234 (260)
410 PRK13684 Ycf48-like protein; P 93.9 2.2 4.7E-05 46.0 16.4 148 494-651 172-329 (334)
411 KOG3630 Nuclear pore complex, 93.8 0.7 1.5E-05 55.3 12.9 148 539-697 100-262 (1405)
412 COG3204 Uncharacterized protei 93.8 2.3 4.9E-05 44.1 15.1 119 534-652 79-209 (316)
413 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 16 0.00035 42.0 28.7 62 389-453 121-194 (527)
414 PF14761 HPS3_N: Hermansky-Pud 93.7 6.4 0.00014 39.2 17.6 106 432-570 30-165 (215)
415 PF12894 Apc4_WD40: Anaphase-p 93.7 0.18 3.9E-06 37.4 5.3 30 581-610 12-41 (47)
416 COG5276 Uncharacterized conser 93.7 7 0.00015 40.5 18.2 141 491-641 83-231 (370)
417 PF13449 Phytase-like: Esteras 93.5 13 0.00028 40.0 23.1 159 494-653 19-249 (326)
418 PF14761 HPS3_N: Hermansky-Pud 93.3 4.3 9.3E-05 40.4 15.6 58 541-599 19-78 (215)
419 PHA02713 hypothetical protein; 93.3 4.2 9E-05 47.2 18.3 184 505-706 303-531 (557)
420 PF07995 GSDH: Glucose / Sorbo 93.2 4.3 9.4E-05 43.6 17.2 105 541-646 3-136 (331)
421 PF10168 Nup88: Nuclear pore c 93.1 1.9 4.1E-05 51.2 15.3 70 582-652 86-178 (717)
422 PHA02713 hypothetical protein; 93.0 7.9 0.00017 44.9 20.2 141 505-651 351-531 (557)
423 KOG2280 Vacuolar assembly/sort 92.7 6.3 0.00014 45.7 17.8 50 397-449 63-113 (829)
424 KOG2444 WD40 repeat protein [G 92.7 0.27 5.9E-06 48.8 6.3 101 552-653 71-177 (238)
425 KOG3630 Nuclear pore complex, 92.7 1.1 2.5E-05 53.6 12.3 143 495-641 101-261 (1405)
426 KOG1916 Nuclear protein, conta 92.7 0.15 3.2E-06 59.2 5.1 131 537-675 130-283 (1283)
427 KOG4460 Nuclear pore complex, 92.6 1.3 2.8E-05 49.0 11.7 83 625-707 105-197 (741)
428 PF12894 Apc4_WD40: Anaphase-p 92.3 0.31 6.7E-06 36.2 4.8 27 681-707 14-40 (47)
429 COG5167 VID27 Protein involved 92.0 3.1 6.7E-05 46.0 13.7 146 384-568 475-632 (776)
430 TIGR03606 non_repeat_PQQ dehyd 91.8 23 0.00049 39.8 20.9 107 537-645 27-167 (454)
431 PLN00033 photosystem II stabil 91.6 11 0.00023 41.7 17.9 147 496-650 240-396 (398)
432 PF14781 BBS2_N: Ciliary BBSom 91.2 10 0.00022 34.8 14.2 122 423-577 4-134 (136)
433 PF12234 Rav1p_C: RAVE protein 91.0 2.5 5.5E-05 48.9 12.6 109 390-527 43-156 (631)
434 PHA03098 kelch-like protein; P 90.8 7.2 0.00016 44.8 16.6 105 505-612 389-513 (534)
435 KOG2247 WD40 repeat-containing 90.7 0.073 1.6E-06 58.0 0.0 113 493-608 73-186 (615)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 90.7 31 0.00067 38.3 27.4 46 579-625 306-351 (415)
437 PF10214 Rrn6: RNA polymerase 90.6 47 0.001 40.2 25.4 173 416-611 78-277 (765)
438 COG5167 VID27 Protein involved 90.5 1.8 4E-05 47.7 10.2 129 520-653 491-632 (776)
439 PF14781 BBS2_N: Ciliary BBSom 90.1 10 0.00022 34.9 13.1 106 500-610 4-125 (136)
440 TIGR03074 PQQ_membr_DH membran 90.1 51 0.0011 39.7 25.2 203 388-613 194-480 (764)
441 KOG2377 Uncharacterized conser 89.2 3.4 7.4E-05 45.1 10.9 103 537-641 64-171 (657)
442 COG4590 ABC-type uncharacteriz 88.9 1.2 2.6E-05 48.3 7.3 155 537-706 218-384 (733)
443 PF03022 MRJP: Major royal jel 88.6 35 0.00076 35.9 19.9 181 399-598 35-253 (287)
444 TIGR03606 non_repeat_PQQ dehyd 88.5 18 0.00038 40.6 16.5 61 575-635 24-90 (454)
445 KOG4441 Proteins containing BT 88.3 13 0.00029 43.1 16.1 104 505-611 427-547 (571)
446 PF08728 CRT10: CRT10; InterP 88.0 15 0.00032 43.3 15.9 112 495-609 101-245 (717)
447 PF13449 Phytase-like: Esteras 87.6 25 0.00053 37.7 16.7 107 583-695 87-231 (326)
448 COG5276 Uncharacterized conser 87.4 40 0.00088 35.2 27.4 260 389-707 97-368 (370)
449 KOG2377 Uncharacterized conser 86.9 11 0.00024 41.3 13.0 139 543-695 26-170 (657)
450 COG5290 IkappaB kinase complex 86.1 13 0.00028 43.4 13.6 119 475-593 227-349 (1243)
451 KOG1916 Nuclear protein, conta 86.0 1.8 4E-05 50.7 7.1 182 397-610 152-374 (1283)
452 PF07569 Hira: TUP1-like enhan 85.8 3.1 6.6E-05 42.0 8.0 65 383-449 17-96 (219)
453 PF07569 Hira: TUP1-like enhan 85.2 4 8.7E-05 41.1 8.5 64 588-652 18-94 (219)
454 KOG2280 Vacuolar assembly/sort 85.1 20 0.00043 41.9 14.5 169 477-652 66-245 (829)
455 PF12657 TFIIIC_delta: Transcr 85.1 4 8.7E-05 39.4 8.2 29 624-652 86-120 (173)
456 PLN00033 photosystem II stabil 84.9 68 0.0015 35.5 30.6 147 542-705 241-396 (398)
457 KOG2247 WD40 repeat-containing 84.8 0.13 2.7E-06 56.2 -2.7 136 495-637 35-173 (615)
458 PF03022 MRJP: Major royal jel 83.9 61 0.0013 34.1 22.4 146 494-641 60-253 (287)
459 PHA02790 Kelch-like protein; P 83.5 40 0.00086 38.3 16.7 102 505-611 362-471 (480)
460 PF10395 Utp8: Utp8 family; I 83.4 1E+02 0.0022 36.2 21.7 168 417-612 129-307 (670)
461 PF12657 TFIIIC_delta: Transcr 83.3 5.8 0.00013 38.3 8.5 32 495-529 86-123 (173)
462 TIGR02276 beta_rpt_yvtn 40-res 83.0 6.2 0.00013 27.7 6.5 39 549-588 1-41 (42)
463 PF10313 DUF2415: Uncharacteri 82.7 3.4 7.3E-05 30.0 4.7 30 624-653 1-33 (43)
464 PHA03098 kelch-like protein; P 82.6 37 0.00079 39.0 16.2 104 505-612 294-416 (534)
465 KOG1898 Splicing factor 3b, su 82.3 52 0.0011 40.0 16.7 171 476-650 854-1045(1205)
466 PRK05560 DNA gyrase subunit A; 81.9 1.3E+02 0.0029 36.6 22.8 159 496-655 538-723 (805)
467 KOG3616 Selective LIM binding 81.6 36 0.00079 39.6 14.6 57 388-447 26-82 (1636)
468 PF10313 DUF2415: Uncharacteri 79.5 8.1 0.00018 28.1 5.8 31 581-611 1-34 (43)
469 PF14727 PHTB1_N: PTHB1 N-term 79.1 1.1E+02 0.0024 34.0 29.1 137 427-567 34-203 (418)
470 TIGR03118 PEPCTERM_chp_1 conse 79.0 91 0.002 32.9 22.7 179 508-698 102-323 (336)
471 KOG1898 Splicing factor 3b, su 78.7 1.2E+02 0.0026 37.1 18.1 177 399-609 854-1047(1205)
472 PF10214 Rrn6: RNA polymerase 78.5 1.6E+02 0.0035 35.6 22.6 141 537-689 77-257 (765)
473 PF02333 Phytase: Phytase; In 76.2 1.3E+02 0.0027 33.1 18.8 146 550-705 67-234 (381)
474 KOG2063 Vacuolar assembly/sort 75.5 78 0.0017 38.4 15.8 68 383-452 21-100 (877)
475 KOG3616 Selective LIM binding 75.2 21 0.00045 41.5 10.3 152 414-571 11-196 (1636)
476 PHA02790 Kelch-like protein; P 74.8 1.2E+02 0.0026 34.5 16.9 105 505-612 271-386 (480)
477 PF07250 Glyoxal_oxid_N: Glyox 74.8 28 0.0006 35.7 10.5 125 520-647 47-193 (243)
478 PF10395 Utp8: Utp8 family; I 74.4 1.8E+02 0.004 34.1 20.9 114 537-652 127-258 (670)
479 PF08801 Nucleoporin_N: Nup133 74.3 1.3E+02 0.0028 33.4 16.9 27 681-707 192-218 (422)
480 PF12768 Rax2: Cortical protei 74.0 63 0.0014 33.9 13.2 97 560-658 16-128 (281)
481 KOG1983 Tomosyn and related SN 73.7 83 0.0018 39.2 16.1 68 540-612 199-266 (993)
482 COG3823 Glutamine cyclotransfe 73.0 83 0.0018 31.4 12.6 101 505-611 55-159 (262)
483 PF07250 Glyoxal_oxid_N: Glyox 72.8 1.2E+02 0.0025 31.1 15.4 142 477-621 48-207 (243)
484 PF02333 Phytase: Phytase; In 72.3 1.6E+02 0.0034 32.4 21.1 188 504-707 66-289 (381)
485 PF07676 PD40: WD40-like Beta 70.3 17 0.00037 25.2 5.7 25 681-705 11-38 (39)
486 TIGR01063 gyrA DNA gyrase, A s 70.2 2.6E+02 0.0056 34.0 21.5 206 495-705 535-766 (800)
487 KOG3522 Predicted guanine nucl 70.0 46 0.001 39.4 11.8 141 390-569 549-698 (925)
488 KOG4460 Nuclear pore complex, 69.9 1.1E+02 0.0024 34.6 14.0 34 495-531 166-202 (741)
489 KOG1900 Nuclear pore complex, 69.7 82 0.0018 39.3 14.3 132 520-653 100-272 (1311)
490 TIGR02276 beta_rpt_yvtn 40-res 69.7 21 0.00045 24.9 6.1 36 390-425 6-41 (42)
491 KOG1900 Nuclear pore complex, 69.4 37 0.0008 42.2 11.3 156 545-707 84-271 (1311)
492 PF03088 Str_synth: Strictosid 69.0 46 0.001 28.4 8.9 40 518-558 36-75 (89)
493 COG4257 Vgb Streptogramin lyas 67.7 1.6E+02 0.0035 30.7 24.5 221 387-651 72-303 (353)
494 COG1506 DAP2 Dipeptidyl aminop 67.1 1.4E+02 0.0031 35.1 15.7 145 537-697 57-234 (620)
495 PF14655 RAB3GAP2_N: Rab3 GTPa 65.9 2.2E+02 0.0048 31.6 24.0 32 622-653 306-337 (415)
496 PF10433 MMS1_N: Mono-function 63.4 2.7E+02 0.0058 31.7 23.0 217 376-633 256-503 (504)
497 PF07676 PD40: WD40-like Beta 63.1 27 0.00058 24.2 5.5 33 575-607 3-38 (39)
498 COG3292 Predicted periplasmic 62.3 2.9E+02 0.0063 31.8 17.1 293 391-706 178-489 (671)
499 PF11715 Nup160: Nucleoporin N 62.0 31 0.00068 39.8 8.9 37 541-577 216-257 (547)
500 PRK13613 lipoprotein LpqB; Pro 61.9 3.2E+02 0.0069 32.1 21.8 154 496-654 364-538 (599)
No 1
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-146 Score=1149.81 Aligned_cols=594 Identities=55% Similarity=0.971 Sum_probs=556.0
Q ss_pred CCccccCCCCccccccccccCCCCcccccCCCcEeccCCChhHHHHHHHcCCCCCCceEeeecCCCeEeecCHHHHHHHH
Q 005235 110 SSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQ 189 (707)
Q Consensus 110 ~~~~~~~~~n~~g~~p~~~y~~~~h~gyd~~g~~i~k~~~~~~~~~~l~~~~~~~~w~~~~d~~~~~~~~lt~~~~~~i~ 189 (707)
+|+||++.|||||||||+||||++|||||++||||+||+++++||+||++||||++||+|+|++||++|+||+||++||+
T Consensus 112 ~sSde~d~rntvgnipl~wYdd~~hIgYD~~gkkI~kp~k~~~ld~fl~~iedp~~Wr~v~Dk~tG~dv~LTkEev~lI~ 191 (733)
T KOG0650|consen 112 DSSDEEDTRNTVGNIPLKWYDDEKHIGYDIDGKKITKPAKGDELDSFLAKIEDPDYWRKVKDKMTGKDVNLTKEEVKLIR 191 (733)
T ss_pred cCcchhhhhcccCCcccccccccccccccccccEecCCCccchHHHHHHhhcCcchhccccccCCCceeeecHHHHHHHH
Confidence 34566679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCccccccccCCcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHcCccccC-CCCCccccccccc
Q 005235 190 RLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFD-EPKEEEPKFYLLW 268 (707)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~~f~psk~e~~~v~klv~~ir~g~~~~~-~~~~~~~~~~~lW 268 (707)
||++|++|+.+||||+||++|||+++|+|||+++|||||||+|||+|+++|++||+|||+|||++. +++++...+||||
T Consensus 192 ri~~g~~pd~d~dpYeP~~d~Fs~~~~~~Pi~~~PepKrrFiPSk~Eakrv~rmv~Air~Gwik~~~r~kee~~~~ydLW 271 (733)
T KOG0650|consen 192 RIARGEIPDPDFDPYEPLVDWFSRDVEIHPISNRPEPKRRFIPSKTEAKRVSRMVHAIRKGWIKTDPREKEENYKFYDLW 271 (733)
T ss_pred HHHcccCCCCCCCccchHHHHhcccccccccccCCCcccccCCcHHHHHHHHHHHHHHHhccccCCccccccCcccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999984 5555556799999
Q ss_pred cCCCchHHhhccccCCCCCCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccc
Q 005235 269 GDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSF 347 (707)
Q Consensus 269 ~~~~~~~~~~~~~~~~papk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f 347 (707)
++++......++.+++||||+.||||++|||||.|||+++++.+.|+...+++|++ |+|++|.+||.||+|.++|+++|
T Consensus 272 ~~dd~~e~l~r~~~~~paPKl~lP~heESYNPP~EYL~~~eE~~~we~~E~~~R~l~F~P~ky~sLR~VPaY~r~irErF 351 (733)
T KOG0650|consen 272 ADDDTGEQLDRHLDLVPAPKLALPGHEESYNPPEEYLFDEEEKKAWEEAEPEDRKLNFIPQKYKSLRKVPAYERSIRERF 351 (733)
T ss_pred ccCCchhhhhcccccCCccccCCCCcccccCCchhhccCHHHhhhhhhccccccccccccccchhhhcchhHHHHHHHHH
Confidence 99888777888899999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEE--------------------EEEeCCCcEEEEeCCC
Q 005235 348 ERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLE--------------------YKGSTDGTVRIWEVES 407 (707)
Q Consensus 348 ~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l--------------------~sgs~DgtVrIWd~~t 407 (707)
+||||||+|||++++++||||++|+|+||+|++|+|||+.+.++ ++||.||+||||++.|
T Consensus 352 eRcLDLYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T 431 (733)
T KOG0650|consen 352 ERCLDLYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT 431 (733)
T ss_pred HHhHHhhhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec
Confidence 99999999999999999999999999999999999999986554 4679999999999999
Q ss_pred CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc--
Q 005235 408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK-- 485 (707)
Q Consensus 408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~-- 485 (707)
|+|++++...+.|.||+|+|.++..+++++.+..+.|.++.-|.....+.+...+.... .....++++..|.....
T Consensus 432 gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 432 GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDE 509 (733)
T ss_pred ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCC--CccCCcccceeechhhhhh
Confidence 99999999999999999999998899999999999999988776555544444433321 11234568899987622
Q ss_pred ---cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235 486 ---LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKN 561 (707)
Q Consensus 486 ---~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~ 561 (707)
.+++.+.|...|.+|.||..|+||++++.++..+.|.||+++++..+ .+| ..++.|+++.|||..++|++|+++.
T Consensus 510 ~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~ 588 (733)
T KOG0650|consen 510 LEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRS 588 (733)
T ss_pred hccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccc
Confidence 23568899999999999999999999999998999999999999999 999 9999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235 562 IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 562 I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg 641 (707)
|+|||+..+.+++++..+..+|++|++||.|++|++|++|++++|||++.+.+|+++++.|..+|++|+||+..++||+|
T Consensus 589 vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 589 VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++||++.|||+++|+|+.++++++|++.|+||...+.+||+++.|||.++||+|+|+||+|+||.
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 99999999999999999999999999999999998899999999999999999999999999995
No 2
>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus
Probab=100.00 E-value=2.5e-91 Score=687.31 Aligned_cols=257 Identities=63% Similarity=1.108 Sum_probs=249.8
Q ss_pred cCCCCcccccCCCcEeccCCChhHHHHHHHcCCCCCCceEeeecCCCeEeecCHHHHHHHHHHHcCCCCCCCCCCCcccc
Q 005235 129 YKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYV 208 (707)
Q Consensus 129 y~~~~h~gyd~~g~~i~k~~~~~~~~~~l~~~~~~~~w~~~~d~~~~~~~~lt~~~~~~i~~~~~~~~~~~~~~~~~~~~ 208 (707)
||||+|||||++|+||||++++|+||+||+++|||++||||||++||+.|+||++||+||+|||+|++|+.+||||+|||
T Consensus 1 Ydd~~HIGYDi~GkkI~K~~~~d~LD~fL~~~ddp~~Wrtv~D~~~g~~v~Lt~eel~lI~ri~~g~~p~~~~dpy~~~v 80 (260)
T PF08145_consen 1 YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSMDDPNYWRTVYDKKNGREVVLTDEELELIRRIQKGEFPDPGYDPYEPYV 80 (260)
T ss_pred CCCCCccCcCCCCCEecCCCchhHHHHHHHhccCccCCceeEcCCCCceeeeCHHHHHHHHHHHcCCCCCCCCCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHcCccccCCCCCc--cccccccccCCCchHHhhccccCCCC
Q 005235 209 DWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEE--EPKFYLLWGDDSSAAEKAKHLAYIPA 286 (707)
Q Consensus 209 ~~~~~~~~~~p~~~~~~~k~~f~psk~e~~~v~klv~~ir~g~~~~~~~~~~--~~~~~~lW~~~~~~~~~~~~~~~~pa 286 (707)
||||+++++|||+++|||||||+|||||++||+|||+|||+|||++.+++++ ++.+||||++++....+.+++|+|||
T Consensus 81 d~ft~~~~~~Pls~~pepKrrFiPSK~E~kkV~Klv~aIr~G~i~~~~~~~~~~~~~~ydlW~d~~~~~~~~~~~~~ipA 160 (260)
T PF08145_consen 81 DWFTSEDEIHPLSNAPEPKRRFIPSKWEAKKVMKLVRAIRMGWIKPDKPKEEEEEPEFYDLWADDDDDEEKRRHPMHIPA 160 (260)
T ss_pred cccCCcccccccCCCCCCCcccCCCHHHHHHHHHHHHHHHhCcCCccccccccccccccccccCcCccccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998877744 78999999998555556788999999
Q ss_pred CCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCccccceee
Q 005235 287 PKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVN 365 (707)
Q Consensus 287 pk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~ln 365 (707)
||++||||++|||||.|||+++++++.|+++++++|.. |+|++|.+||.||+|.++|+|+|+||||||||||++++++|
T Consensus 161 PK~~LPgh~eSYNPP~EYL~~~~E~~~w~~~~pedR~~~fiP~k~~sLR~Vp~Y~~~i~ErFeRCLDLYLcPR~~k~rln 240 (260)
T PF08145_consen 161 PKLKLPGHAESYNPPPEYLPTEEEKKEWEEMDPEDRKKNFIPQKFDSLRKVPAYENFIKERFERCLDLYLCPRVRKKRLN 240 (260)
T ss_pred CCCCCCCCccccCCchHhccCHHHHHHHHhcCchhccccccchhhhhhhccchHHHHHHHHHHHhhhhhcCcHhhcccCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccC
Q 005235 366 IDPETLKPKLPSRKDLKPYP 385 (707)
Q Consensus 366 idp~~llp~lp~~~~l~pfp 385 (707)
|||++|||+||+|++|+|||
T Consensus 241 idPesLlPkLP~p~dLrPFP 260 (260)
T PF08145_consen 241 IDPESLLPKLPSPKDLRPFP 260 (260)
T ss_pred CCHHHhCCCCcChHhcCCCC
Confidence 99999999999999999998
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-44 Score=359.11 Aligned_cols=333 Identities=17% Similarity=0.211 Sum_probs=294.4
Q ss_pred ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235 325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE 404 (707)
Q Consensus 325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd 404 (707)
|-||..-.+|.|-.....+.+|-+.++.+.|+|.+ ..+++||.|.|+|+||
T Consensus 93 yqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g-----------------------------~~l~tGsGD~TvR~WD 143 (480)
T KOG0271|consen 93 YQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTG-----------------------------SRLVTGSGDTTVRLWD 143 (480)
T ss_pred eccchhhcccccceeccccCCCCCcEEEEEecCCC-----------------------------ceEEecCCCceEEeec
Confidence 66766666777767777777888888998888765 4899999999999999
Q ss_pred CCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc---hhcccccceeeeccc----------ccc
Q 005235 405 VESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE---EEQRRVKDLLHVETP----------TAP 470 (707)
Q Consensus 405 ~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~---~~~~~~~~v~~~~~~----------~~~ 470 (707)
+.|...+.+.++ ...|.||+|+||| ..|++++.+|+|++||+.++.+ .+.+|...+.+++|. +++
T Consensus 144 ~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 144 LDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred cCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec
Confidence 999999999888 8999999999999 4899999999999999999875 678899999999886 788
Q ss_pred cCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235 471 DDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH 548 (707)
Q Consensus 471 ~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs 548 (707)
++.||.+++|+...+... .+.+|+.+|+||.|-.+ .++++++.|+ +|++|+...+.+. ..+ +|...|+.++.+
T Consensus 223 ~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~Dr---tIkvw~a~dG~~~-r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDR---TIKVWRALDGKLC-RELKGHAHWVNHLALS 297 (480)
T ss_pred ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCc---eEEEEEccchhHH-Hhhcccchheeeeecc
Confidence 889999999999876544 47899999999999754 4899999988 9999999998888 888 898899988766
Q ss_pred -----------CCCC-------------------------EEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcC
Q 005235 549 -----------PTRS-------------------------IFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHP 590 (707)
Q Consensus 549 -----------pd~~-------------------------~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~sp 590 (707)
|.+. .|++|+ |.++.+|+... .+++..+.+|..-|+.+.|||
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 3333 388888 79999999765 468889999999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235 591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670 (707)
Q Consensus 591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l 670 (707)
|++++|++|.|..|++||.+++ +.+.+|++|-++|..|+|+.|.++|+|||.|.+++||++ .+..+ ...|
T Consensus 378 d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V------~tkKl---~~DL 447 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV------RTKKL---KQDL 447 (480)
T ss_pred CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe------eeeee---cccC
Confidence 9999999999999999999998 788999999999999999999999999999999999954 44444 5678
Q ss_pred eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 671 ~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.||... |.++.|+|||..+++||.|..++||.
T Consensus 448 pGh~DE----Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 448 PGHADE----VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCCce----EEEEEecCCCceeecCCCceEEEeec
Confidence 999998 99999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=342.58 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=251.0
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~ 457 (707)
....|+.++..++|||-+|.++||++.++..+.+|.+ .+.|.++.|+|. .+..+++++.||++++|++.+..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~----- 253 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP----- 253 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-----
Confidence 3345888999999999999999999999999999988 899999999998 346899999999999999766422
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF- 536 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~- 536 (707)
+..+.+|...|..++|||+|++|+|+|.|. +.++||+.++... ...
T Consensus 254 -----------------------------l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~El-L~QE 300 (459)
T KOG0272|consen 254 -----------------------------LQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSEL-LLQE 300 (459)
T ss_pred -----------------------------hhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhh-Hhhc
Confidence 224668999999999999999999999998 9999999999876 445
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
+|...|.+++|+|+|.++++|+ |..-||||+++++++..|.+|...|.+|+|+|+|-+||+||.|++++|||++.. .+
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ 379 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SE 379 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-cc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999976 67
Q ss_pred eEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 616 YRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
+.++.+|..-|+.|.|+| .|.+|+|||.|++++||... ...|++.|.||.+. |.+++.+|++.+|+
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~---------~~~~~ksLaGHe~k----V~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR---------TWSPLKSLAGHEGK----VISLDISPDSQAIA 446 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeecCC---------CcccchhhcCCccc----eEEEEeccCCceEE
Confidence 889999999999999999 78899999999999999433 33469999999998 99999999999999
Q ss_pred EEeCCCcEEEEe
Q 005235 695 TAGADSVIRLYC 706 (707)
Q Consensus 695 s~g~Dg~IrlWd 706 (707)
|++.|.+|++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999995
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-37 Score=297.88 Aligned_cols=271 Identities=21% Similarity=0.316 Sum_probs=240.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
..-+|+++|.|.|||+|.+.||.|.+++++ ++.|+.+...|++ ..++++....|++||+.++.+.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk--~~LAaa~~qhvRlyD~~S~np~------------ 74 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK--KDLAAAGNQHVRLYDLNSNNPN------------ 74 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc--chhhhccCCeeEEEEccCCCCC------------
Confidence 345899999999999999999999999999 8999999999999 6888888899999999876432
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS 545 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v 545 (707)
. ...+.+|...|++|.|..+|+++++|+.|| +++|||++...++ +.|.+.++|+++
T Consensus 75 ----------P----------v~t~e~h~kNVtaVgF~~dgrWMyTgseDg---t~kIWdlR~~~~q-R~~~~~spVn~v 130 (311)
T KOG0315|consen 75 ----------P----------VATFEGHTKNVTAVGFQCDGRWMYTGSEDG---TVKIWDLRSLSCQ-RNYQHNSPVNTV 130 (311)
T ss_pred ----------c----------eeEEeccCCceEEEEEeecCeEEEecCCCc---eEEEEeccCcccc-hhccCCCCcceE
Confidence 1 123568999999999999999999999999 9999999998887 888888999999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----cceEE
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-----KPYRV 618 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-----~~~~~ 618 (707)
..||+...|+++. +|.|++||+....+...+... ...|.++++.|+|..|+.+...|++++|++-... .|+..
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 9999999999999 799999999988777766543 3569999999999999999999999999986532 57788
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
++.|.+-|..+.|||++++||+||.|.+++||+.. .. +..-..+.||... |.+++||.||.||+||+.
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~------~~--~kle~~l~gh~rW----vWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD------DF--FKLELVLTGHQRW----VWDCAFSADGEYLVTASS 278 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecC------Cc--eeeEEEeecCCce----EEeeeeccCccEEEecCC
Confidence 99999999999999999999999999999999654 22 2235688999887 999999999999999999
Q ss_pred CCcEEEEeC
Q 005235 699 DSVIRLYCH 707 (707)
Q Consensus 699 Dg~IrlWdl 707 (707)
|+++++|++
T Consensus 279 d~~~rlW~~ 287 (311)
T KOG0315|consen 279 DHTARLWDL 287 (311)
T ss_pred CCceeeccc
Confidence 999999985
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=314.95 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=250.2
Q ss_pred eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEE
Q 005235 409 RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSW 480 (707)
Q Consensus 409 ~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW 480 (707)
+|-..+.+ .++|.|++|+|+| ..|++++.|.++++||+.+..+ ...+|..-+++++++ +++|+.+|+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 45555665 8899999999999 5899999999999999988765 677899999999998 9999999999999
Q ss_pred ecCCccce--EEeccCCCeEEEEEcC-----CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235 481 LQHDKLDG--IRLRHFKMVSSVEWHR-----RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS 552 (707)
Q Consensus 481 ~~~~~~~~--~~~~h~~~V~~v~~sp-----~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~ 552 (707)
+...+... .+.+|...|++++|.| .+.+||+++.|| .|+|||+..+.++ ..+ +|..+|+|+.|-.+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg---~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG---SVRIWDTKLGTCV-RTLSGHTASVTCVRWGGEG- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC---CEEEEEccCceEE-EEeccCccceEEEEEcCCc-
Confidence 98766543 3889999999999976 567999999999 9999999999998 777 999999999998665
Q ss_pred EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-----------CCC-------------------------CEE
Q 005235 553 IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIH-----------PAG-------------------------DNL 595 (707)
Q Consensus 553 ~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s-----------pdg-------------------------~~L 595 (707)
+|++++ |++|++|+...|.+...|.+|..+|+.|+++ |.| ..|
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 788888 9999999999999999999999999999876 333 359
Q ss_pred EEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 596 IVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 596 ~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
++||.|.++.+|+.....+|+..+.+|..-|+.|.||||++++||+|-|.+|++|+++ ++.. +..|+||-.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~------tGk~---lasfRGHv~ 410 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR------TGKF---LASFRGHVA 410 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC------Ccch---hhhhhhccc
Confidence 9999999999999988878999999999999999999999999999999999999654 3433 789999999
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
. |..++|+.|.++|+||+.|.++++|++
T Consensus 411 ~----VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 411 A----VYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred e----eEEEEeccCccEEEEcCCCceEEEEEe
Confidence 8 999999999999999999999999985
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=287.52 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=252.2
Q ss_pred ccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCc
Q 005235 341 NAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEA 419 (707)
Q Consensus 341 ~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~ 419 (707)
+.+++|...++++.|+++.+ .++++|.||.+.|||.-|...++.+.. ...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr-----------------------------~ivSaSqDGklIvWDs~TtnK~haipl~s~W 99 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR-----------------------------RIVSASQDGKLIVWDSFTTNKVHAIPLPSSW 99 (343)
T ss_pred EEecccccceeeeEecCCcC-----------------------------eEEeeccCCeEEEEEcccccceeEEecCcee
Confidence 45677777779999998765 899999999999999999999999988 789
Q ss_pred EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235 420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS 499 (707)
Q Consensus 420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~ 499 (707)
|..++|+|.|+ .+++++.|+...||++.+.+. ++.+.+ ...+.+|.+.+.|
T Consensus 100 VMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~---------------------~g~~~v-------~r~l~gHtgylSc 150 (343)
T KOG0286|consen 100 VMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDA---------------------EGNVRV-------SRELAGHTGYLSC 150 (343)
T ss_pred EEEEEECCCCC-eEEecCcCceeEEEecccccc---------------------ccccee-------eeeecCccceeEE
Confidence 99999999994 677778899999999875421 111111 1236799999999
Q ss_pred EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l 576 (707)
+.|-. ...|+|++.|. ++.+||+.+++.. ..| +|.+.|.++.++| +++.|++|+ |++.+|||++.+.++++|
T Consensus 151 C~f~d-D~~ilT~SGD~---TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 151 CRFLD-DNHILTGSGDM---TCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred EEEcC-CCceEecCCCc---eEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 99987 56788999888 9999999999998 899 9999999999999 899999988 999999999999999999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
.+|...|+++.|+|+|.-+++||.|+++++||++.. +.+..+... ..+|++|+||..|++|.+|..|.++.|||
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD--- 301 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD--- 301 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee---
Confidence 999999999999999999999999999999999976 556666522 35799999999999999999999999995
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
...... +..|.||.+. |.++..+|||.-|+||+.|.++|||.
T Consensus 302 ---tlk~e~---vg~L~GHeNR----vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 ---TLKGER---VGVLAGHENR----VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---ccccce---EEEeeccCCe----eEEEEECCCCcEEEecchhHheeecC
Confidence 444443 7889999998 99999999999999999999999995
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=296.82 Aligned_cols=237 Identities=21% Similarity=0.210 Sum_probs=216.7
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
..+|..+.|+++++ .|++++.+|.++||+..... ..+.+.+|...
T Consensus 175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~----------------------------------~~~~l~gH~~~ 219 (459)
T KOG0272|consen 175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCN----------------------------------LLQTLRGHTSR 219 (459)
T ss_pred CCcceeeEeecCCC-eEEEeecCCceeEeecCCcc----------------------------------eeEEEeccccc
Confidence 56889999999994 89999999999999976642 22357799999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235 497 VSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL 572 (707)
Q Consensus 497 V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~ 572 (707)
|.++.|||. +..+|+++.|| ++++|++++.... ..| +|...|..|+|||+|++|.+++ |.+-++||+.++..
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dg---tvklw~~~~e~~l-~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADG---TVKLWKLSQETPL-QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred eeeEEEccCCCccceeeeccCC---ceeeeccCCCcch-hhhhcchhhheeeeecCCCceeeecccccchhhcccccchh
Confidence 999999996 67999999999 9999999998777 788 9999999999999999999999 99999999999988
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+....+|...|.+++|+|||.++++|+.|..-+|||++++ +++-.|.+|...|.+|+|+|+|..|||||.|++++|||+
T Consensus 296 lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 8888999999999999999999999999999999999998 788999999999999999999999999999999999955
Q ss_pred ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe
Q 005235 653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 653 ~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~IrlWd 706 (707)
+ .... +.++.+|.+- |+.|.|+| .|.+|+|+|.|++++||.
T Consensus 375 R------~r~~---ly~ipAH~nl----VS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 375 R------MRSE---LYTIPAHSNL----VSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred c------cccc---ceecccccch----hhheEecccCCeEEEEcccCcceeeec
Confidence 4 4333 7889999998 99999999 788999999999999996
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=303.41 Aligned_cols=403 Identities=18% Similarity=0.225 Sum_probs=301.3
Q ss_pred ccccccCCCchHHhhccccCCCCCCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccc
Q 005235 264 FYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYEN 341 (707)
Q Consensus 264 ~~~lW~~~~~~~~~~~~~~~~papk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~ 341 (707)
...+|.-+.+.-.+.++..| .+|.+.+ .|+|.|-.|++++. |+.+ |.-....+...+.++..
T Consensus 85 llrv~~L~tgk~irswKa~H-e~Pvi~m-----a~~~~g~LlAtgga----------D~~v~VWdi~~~~~th~fkG~gG 148 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIH-EAPVITM-----AFDPTGTLLATGGA----------DGRVKVWDIKNGYCTHSFKGHGG 148 (775)
T ss_pred eEEEEEcccchHhHhHhhcc-CCCeEEE-----EEcCCCceEEeccc----------cceEEEEEeeCCEEEEEecCCCc
Confidence 45677766665555555433 3344433 59999988888665 3333 43444555555555555
Q ss_pred cccccceeeeeEEEcCcccccee------------ecC-CCCCCCCCCCCCCCc---ccCCCCcEEEEEeCCCcEEEEeC
Q 005235 342 AVKDSFERCMDLYLCPRVRKKRV------------NID-PETLKPKLPSRKDLK---PYPVACYLEYKGSTDGTVRIWEV 405 (707)
Q Consensus 342 ~i~e~f~rcldL~l~pr~~k~~l------------nid-p~~llp~lp~~~~l~---pfp~~~~~l~sgs~DgtVrIWd~ 405 (707)
.| ..+.|.|...+.-| |+. ....+-.+..+..-. .|..++..++++|.|..+.|||+
T Consensus 149 vV-------ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 149 VV-------SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred eE-------EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 54 44555554433111 111 111111111111111 35666788999999999999999
Q ss_pred CCCeEEEEEecCCcEEEEEEccC-----CCccEEEEEeCCeEEEEECCCCCchh--------------------------
Q 005235 406 ESGRCLRVLEIGEAIQYVAWNPL-----PELPVLAVSVGQDVLILNTGLGNEEE-------------------------- 454 (707)
Q Consensus 406 ~tg~~l~~l~~~~~V~~v~~spd-----g~~~lla~s~d~~V~lwd~~~~~~~~-------------------------- 454 (707)
.+-++++++.....+.++.+-++ + ..++++|.+|.+++|+..++....
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~-~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt 300 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKG-EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT 300 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcc-eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence 98888888888888888888887 4 379999999999999988763211
Q ss_pred -------------------cccccceeeeccc------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE
Q 005235 455 -------------------QRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL 509 (707)
Q Consensus 455 -------------------~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l 509 (707)
.+.++.++++.|- ++.+++.+.+++++..+....++.+|...|.+++...+|.+|
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEE
Confidence 1112222222222 678888999999999888888899999999999977788999
Q ss_pred EEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCe-----EEE----
Q 005235 510 STVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQR-----LIK---- 574 (707)
Q Consensus 510 at~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~-----~~~---- 574 (707)
+||+.|. ++++|.++.+.+....+ +|.+.|.+++++..+. +|++++ |++|++|++...+ .+.
T Consensus 381 at~sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 381 ATGSKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEecCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 9999998 99999996655542222 8899999999977664 555566 9999999998621 111
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
+...|...|+|++++|+..+||+||.|++.+||++... ....+|.+|+..|++|.|+|..+++||||.|++|+||.+..
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 23468899999999999999999999999999999955 88999999999999999999999999999999999996554
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++ |+++|.||+.. |..+.|-.+|..|+||++||.|+||++
T Consensus 537 fS---------ClkT~eGH~~a----Vlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 537 FS---------CLKTFEGHTSA----VLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ce---------eeeeecCccce----eEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 33 59999999998 999999999999999999999999985
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=295.07 Aligned_cols=359 Identities=15% Similarity=0.240 Sum_probs=277.5
Q ss_pred CCCCCccccCCCCCccCChh--hhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCccccceeec
Q 005235 290 KLPGHEESYNPSLEYIPTQE--ELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNI 366 (707)
Q Consensus 290 ~lpgh~~synP~ge~L~s~~--~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lni 366 (707)
+-+-++-.|||+|.+++-+. -++.|.. |..++- |.| + ...+...++|+....+.|+-+.
T Consensus 96 k~~v~~i~fSPng~~fav~~gn~lqiw~~--P~~~~~~~~p--------F-vl~r~~~g~fddi~si~Ws~DS------- 157 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHA--PGEIKNEFNP--------F-VLHRTYLGHFDDITSIDWSDDS------- 157 (893)
T ss_pred cCccceEEECCCCcEEEEEecceeEEEec--CcchhcccCc--------c-eEeeeecCCccceeEEEeccCC-------
Confidence 33455667999999987633 3466662 222221 222 1 1112235677777888887555
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEE
Q 005235 367 DPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVL 443 (707)
Q Consensus 367 dp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~ 443 (707)
.++++||.|.++|||.+...+-+..+.. .+.|.++-|..+. ..+++++.||.+.
T Consensus 158 ----------------------r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~-~~l~tvskdG~l~ 214 (893)
T KOG0291|consen 158 ----------------------RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS-LDLYTVSKDGALF 214 (893)
T ss_pred ----------------------ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc-ceEEEEecCceEE
Confidence 4999999999999999987665444433 7889999999888 4799999999999
Q ss_pred EEECCCC-----------------------Cch-------------hcccccceeeecc-----------c---------
Q 005235 444 ILNTGLG-----------------------NEE-------------EQRRVKDLLHVET-----------P--------- 467 (707)
Q Consensus 444 lwd~~~~-----------------------~~~-------------~~~~~~~v~~~~~-----------~--------- 467 (707)
+|..... +.. +......+.+..| +
T Consensus 215 ~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel 294 (893)
T KOG0291|consen 215 VWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL 294 (893)
T ss_pred EEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence 9987711 000 0000012222221 1
Q ss_pred ---------------------------ccccC-CCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235 468 ---------------------------TAPDD-NMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGES 518 (707)
Q Consensus 468 ---------------------------~~~~~-~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~ 518 (707)
++.++ .-|.+.+|+.....-.. ..+|...+++++++|||.++|||+.||
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-- 372 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-- 372 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC--
Confidence 22222 33678888877554433 678999999999999999999999999
Q ss_pred cEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEE
Q 005235 519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNL 595 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L 595 (707)
.|+|||...+-|. .+| .|...|+.+.|+..++.+++++ ||+||.||+...+..+++.... ...+|++..|.|..+
T Consensus 373 -KVKvWn~~SgfC~-vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 373 -KVKVWNTQSGFCF-VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred -cEEEEeccCceEE-EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 9999999999999 999 9999999999999999999999 9999999999999999998754 237899999999999
Q ss_pred EEEECCCc-EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235 596 IVGSREGK-LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT 674 (707)
Q Consensus 596 ~sGs~Dg~-I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~ 674 (707)
++|+.|.. |.+|+++++ +.+..|.+|.++|.+++|+|.+..|||+|.|.+|++|++-. +... +.++.-..
T Consensus 451 ~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~-----s~~~---vEtl~i~s 521 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS-----SSGT---VETLEIRS 521 (893)
T ss_pred EeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec-----cCce---eeeEeecc
Confidence 99999875 999999998 89999999999999999999999999999999999996431 1112 44454433
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 675 SSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 675 ~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
. |++++|+|+|+-|++++-||.|.+||.
T Consensus 522 d-----vl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 522 D-----VLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred c-----eeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 3 999999999999999999999999984
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-32 Score=265.99 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=223.9
Q ss_pred cEEEEEeCCCcEEEEeCC-----CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVE-----SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~-----tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.++++++.|.++.+|++. .|..++.+.+ ...|..++.+++|+ +.++++.|+++++||+.++..
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~---------- 97 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGES---------- 97 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEeccccceEEEEEecCCcE----------
Confidence 589999999999999875 4778888888 78999999999994 899999999999999877632
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-cCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-LHG 540 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-~~~ 540 (707)
...+.+|...|.+++|+++...+++|++|. +|.+|+.-..... ... . +.+
T Consensus 98 ------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDk---Tiklwnt~g~ck~-t~~~~~~~~ 149 (315)
T KOG0279|consen 98 ------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---TIKLWNTLGVCKY-TIHEDSHRE 149 (315)
T ss_pred ------------------------EEEEEecCCceEEEEecCCCceeecCCCcc---eeeeeeecccEEE-EEecCCCcC
Confidence 234779999999999999999999999988 9999999877654 222 3 388
Q ss_pred CeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235 541 LPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 541 ~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
.|.|+.|+|+ .++|++++ |++|++||+++.++...+.+|.+.++.+++||||...++|+.||.+.+||++.+ +.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~ly 228 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLY 228 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeE
Confidence 9999999998 68888888 999999999999999999999999999999999999999999999999999987 5566
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE-EeeCC-CCCCCCCeeEEEEcCCCCEEEE
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE-ILRGH-TSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~-~l~gh-~~~~~~gV~~l~fspdg~~L~s 695 (707)
.+. |...|.+++|+|+...|+.+. +.+|+||+. .+...+..++ .+.|. .....-...+++|+++|..|++
T Consensus 229 sl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl------~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDL------ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEeecc-CCceEEEec------cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 664 788999999999988877765 445999954 3333321111 11122 1111122688999999999999
Q ss_pred EeCCCcEEEEeC
Q 005235 696 AGADSVIRLYCH 707 (707)
Q Consensus 696 ~g~Dg~IrlWdl 707 (707)
|-.|+.|++|.+
T Consensus 301 g~td~~irv~qv 312 (315)
T KOG0279|consen 301 GYTDNVIRVWQV 312 (315)
T ss_pred eecCCcEEEEEe
Confidence 999999999964
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-33 Score=309.00 Aligned_cols=275 Identities=15% Similarity=0.234 Sum_probs=228.2
Q ss_pred EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc-
Q 005235 410 CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD- 487 (707)
Q Consensus 410 ~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~- 487 (707)
|+.++.. ...++|..|++++. .++++..|..|++|.+.............+.. +-+.+.+-.+...+......
T Consensus 370 c~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~----~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSN----IDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhcc----ccccccchhhhhccccCCcee
Confidence 4445544 67899999999993 56666688999999987431100000000000 00111222233333333322
Q ss_pred eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235 488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY 565 (707)
Q Consensus 488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw 565 (707)
..+.+|.++|..+.|+|+.++|++++.|+ +|++|.+.+..+. ..+ +|..+|..|.|+|.|-+|++|+ |++-++|
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~---svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDS---SVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCc---ceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 34789999999999999999999999998 9999999999998 777 9999999999999999999998 9999999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
......+++.+.+|.+.|.|+.|||+..++++||.|.+|++||+.++ ..++.|.||.++|.+|+|||+|++||+|+.||
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999988 67999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.|.|| |+..+.+ +..+.+|++. |.++.|+.+|..||+||.|++|++||+
T Consensus 600 ~I~iW------Dl~~~~~---v~~l~~Ht~t----i~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 600 LIKIW------DLANGSL---VKQLKGHTGT----IYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cEEEE------EcCCCcc---hhhhhcccCc----eeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 99999 5555544 7889999888 999999999999999999999999996
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-30 Score=273.56 Aligned_cols=308 Identities=16% Similarity=0.159 Sum_probs=249.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---c
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---Q 455 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---~ 455 (707)
-|++++.++++.|.||+|.|||-.+|+.+..+.. .+.|.+|+|+||+ .++++++.|.+++|||+.+..... .
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeec
Confidence 4788899999999999999999999999999984 8999999999999 589999999999999998874311 1
Q ss_pred c--cccceeeeccc---ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235 456 R--RVKDLLHVETP---TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 456 ~--~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
+ ..++.+.+-+. +.+.+.+|.+..++...... ..+.+|...|++++.++++++|++|+.|| .|.-|+..++
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG---~I~~W~~~~g 352 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG---HINSWDSGSG 352 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc---eEEEEecCCc
Confidence 1 12333333333 67778889999998876553 34789999999999999999999999999 9999999998
Q ss_pred ceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe--------------EE-----------------EEE
Q 005235 530 LSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR--------------LI-----------------KKL 576 (707)
Q Consensus 530 ~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~--------------~~-----------------~~l 576 (707)
..- ..+ .|...|.+++-+..+.++.++-|.++++.++..+. .+ ..|
T Consensus 353 ~~~-~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 353 TSD-RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccc-ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 875 443 78889999998887777777779999999773210 00 011
Q ss_pred eCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 577 ETGL--------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 577 ~~~~--------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
+.+. -..++++++|++..+++|+.|+.|+||.+.... .....+..|.++|++|+|||++.+||+|...+.|
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 1111 225789999999999999999999999997543 3444667899999999999999999999999999
Q ss_pred EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+|++. +... -...+.-|+.. |.+++|+|+...+|||+-|-+|.||++
T Consensus 512 v~yd~~------s~~~--~~~~w~FHtak----I~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 512 VLYDVA------SREV--KTNRWAFHTAK----INCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEEEcc------cCce--ecceeeeeeee----EEEEEeCCCceEEEeccccceEEEEEc
Confidence 999654 3332 24556668887 999999999999999999999999985
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=273.43 Aligned_cols=268 Identities=20% Similarity=0.223 Sum_probs=239.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
...++++++.|++|++||..||++.+.+++ .+.|..|+|+..| ..+++++.|-.+.+||....-.
T Consensus 119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~------------- 184 (406)
T KOG0295|consen 119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFR------------- 184 (406)
T ss_pred CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHH-------------
Confidence 345899999999999999999999999988 6779999999999 4677777777788888654211
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS 544 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~ 544 (707)
+.....+|...|.+++|-|.|+++++++.|. +|+.|++.++-+. .+| +|...|..
T Consensus 185 --------------------c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~---tik~We~~tg~cv-~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 185 --------------------CIKSLIGHEHGVSSVFFLPLGDHILSCSRDN---TIKAWECDTGYCV-KTFPGHSEWVRM 240 (406)
T ss_pred --------------------HHHHhcCcccceeeEEEEecCCeeeeccccc---ceeEEecccceeE-EeccCchHhEEE
Confidence 1123668999999999999999999999988 9999999999999 999 99999999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC---------------CCEEEEEECCCcEEEEE
Q 005235 545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA---------------GDNLIVGSREGKLCWFD 608 (707)
Q Consensus 545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd---------------g~~L~sGs~Dg~I~vwD 608 (707)
+..+.||.++++++ |.+|++|-+.++++...+..|.-+|-|++|.|. |.++.+||.|++|++||
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 99999999999998 999999999999888889999999999999772 35999999999999999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
+.++ .++.+|.+|...|+.++|||.|++|+|+.+|++++|| |+.... +.+++..|... |++++|+.
T Consensus 321 v~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw------dl~~~~---cmk~~~ah~hf----vt~lDfh~ 386 (406)
T KOG0295|consen 321 VSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW------DLKNLQ---CMKTLEAHEHF----VTSLDFHK 386 (406)
T ss_pred ccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE------Eeccce---eeeccCCCcce----eEEEecCC
Confidence 9998 8899999999999999999999999999999999999 444444 47888899888 99999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 005235 689 RQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 689 dg~~L~s~g~Dg~IrlWd 706 (707)
+-++++||+-|.++++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 999999999999999995
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=280.22 Aligned_cols=272 Identities=19% Similarity=0.234 Sum_probs=239.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC--chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN--EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~--~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
...|..|.|.|+| +.|++++..|.+.+|+..+.. ..++.|...|.++.++ +++++.+|.|+.|...-..+..
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 5689999999999 589999999999999986653 3677888888888887 8899999999999887655555
Q ss_pred Ee-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 490 RL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 490 ~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
.. .|...|++++|+|+...|++++.|| +|+|||....... ..+ +|.-.|.++.|||...+|++++ |+.|++||
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg---~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDG---TIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCC---eEEEEeccCCchh-heeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 44 4559999999999999999999999 9999999988877 777 9999999999999999999999 89999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCC
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDC 645 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg 645 (707)
.+++.++.++..|...|..+.|+|++++|+++|.|..+++||+++. +.+.++++|...|++++|||-.. +|++|+.||
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999999999999999965 67889999999999999999655 899999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|..|.+. .+.++ ...-.+|... |++++|||-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~-----~~~p~---~~i~~AHd~~----iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVG-----LEEPL---GEIPPAHDGE----IWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEecc-----ccccc---cCCCcccccc----eeeeeccccceeEeecCCCcceeeec
Confidence 99999653 12222 1223467766 99999999999999999999999996
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=284.71 Aligned_cols=389 Identities=13% Similarity=0.133 Sum_probs=304.5
Q ss_pred CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceee----eeEEEcCc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERC----MDLYLCPR 358 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rc----ldL~l~pr 358 (707)
.+.+|.. +|++++..+.+.+. |+.+ |.-.++..++.+|.|+..=...+.+- -..|+-.+
T Consensus 187 ~~~~H~S~vtsL~~~~d~~~~ls~~R----------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 187 TMILHKSAVTSLAFSEDSLELLSVGR----------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred HHHhhhhheeeeeeccCCceEEEecc----------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 4455543 69999998888777 6665 55578888999998876521111110 01233333
Q ss_pred cccceeec-CCCCC--C-----CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCC
Q 005235 359 VRKKRVNI-DPETL--K-----PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLP 429 (707)
Q Consensus 359 ~~k~~lni-dp~~l--l-----p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg 429 (707)
+....+.+ ++++- + |..|....+-+-+... .++....|..+.++|..+++..+.+-+ .+.|..|+|-...
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~-~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS-QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccC-ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 33333332 44431 1 1111122222333333 344556788899999999998888877 8899999987655
Q ss_pred CccEEEEEeCCeEEEEECCCCCc-hhcccccceeeec-cc----ccccCCCCcEEEEecCCccc-----eEEeccCCCeE
Q 005235 430 ELPVLAVSVGQDVLILNTGLGNE-EEQRRVKDLLHVE-TP----TAPDDNMASIVSWLQHDKLD-----GIRLRHFKMVS 498 (707)
Q Consensus 430 ~~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v~~~~-~~----~~~~~~d~~i~iW~~~~~~~-----~~~~~h~~~V~ 498 (707)
+..+++++....+++++..+... .+.+|++.++++. +. +++++.|.++++|.+..... ....+|.+.|.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 56888899999999999887654 6788999998887 22 89999999999998843322 22568999999
Q ss_pred EEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceee--e------ee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 499 SVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHR--I------PF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 499 ~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~--~------~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
+|+++..| .+|+++|.|+ ++++|++....... . .- .|...|+||+.+|+.++|++|+ |++.+||++
T Consensus 416 ava~~~~~asffvsvS~D~---tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDC---TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred eeeecccCccEEEEecCCc---eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 99997755 5889999988 99999998722110 1 11 6788999999999999999999 999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
....+..+|.+|...|.|+.|+|....|+++|.|++|+||.+.+. .++++|.||+.+|..+.|-.+|..|+||+.||-|
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcE
Confidence 999999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+||++ .++. |+.++.+|... |++++-+|....++|||.||.|.+|.
T Consensus 572 KlWni------kt~e---C~~tlD~H~Dr----vWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 572 KLWNI------KTNE---CEMTLDAHNDR----VWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEEec------cchh---hhhhhhhccce----eEEEeecCccceeEecCCCeEEEEee
Confidence 99954 4444 48899999998 99999999999999999999999993
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-30 Score=266.71 Aligned_cols=352 Identities=17% Similarity=0.201 Sum_probs=278.3
Q ss_pred CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccc---cccccccccceeeeeEEEcCcc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVP---AYENAVKDSFERCMDLYLCPRV 359 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~---~~~~~i~e~f~rcldL~l~pr~ 359 (707)
.+..|.. .|||+|++.+|.+. |+++ |.=+.++.+..+. ++...| ..|.|+|+.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~aHkGsI-------falsWsPDs 247 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSDAHKGSI-------FALSWSPDS 247 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCCCccccE-------EEEEECCCC
Confidence 4445554 69999999999887 7777 5556666666665 565555 899999887
Q ss_pred ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecC----CcEEEEEEccCCCccEEE
Q 005235 360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIG----EAIQYVAWNPLPELPVLA 435 (707)
Q Consensus 360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~----~~V~~v~~spdg~~~lla 435 (707)
. .++|+|.|.+++|||+.++.+++++... ..-..+.|-.+ .|++
T Consensus 248 ~-----------------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd---~lIt 295 (603)
T KOG0318|consen 248 T-----------------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD---HLIT 295 (603)
T ss_pred c-----------------------------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC---eEEE
Confidence 3 7999999999999999999999999883 34456667643 5999
Q ss_pred EEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEE--eccCCCeEEEEEcCCC
Q 005235 436 VSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIR--LRHFKMVSSVEWHRRG 506 (707)
Q Consensus 436 ~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~--~~h~~~V~~v~~sp~g 506 (707)
++.+|+|.++++...+. .+.+|.+.+.++..+ +.+++.||.|..|+...+....+ ..|...|.+++-+..+
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 99999999999988764 677899999888776 89999999999999987776654 5799999999987666
Q ss_pred CEEEEEeCCCCccEEEEEECCCCcee----------e-------------------ee-e---------ccCCCeEEEEE
Q 005235 507 DYLSTVMPAGESRAIFMHQLSKKLSH----------R-------------------IP-F---------KLHGLPVSSVF 547 (707)
Q Consensus 507 ~~lat~s~dg~~~~V~Iwdl~~~~~~----------~-------------------~~-~---------~~~~~V~~v~f 547 (707)
.+ ++++.|. ++++.++...... . .. + ...-.+.++++
T Consensus 376 ~~-~t~g~Dd---~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 376 EL-FTIGWDD---TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV 451 (603)
T ss_pred cE-EEEecCC---eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence 54 4555555 6777755221100 0 00 0 11235678999
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 548 HPTRSIFFVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 548 spd~~~l~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
+|++..+++|+ |+.|+||.|....+ ...+..|.+.|+++++||+|.+||+|...+.+.+||+.+.......+..|++
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 99999999999 89999999987543 3356678899999999999999999999999999999987555566778999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
.|.+++|+|+..++|+||-|-.|.||.+..+. . .+.....|... |+.+.|-. ...|+|+|.|..|++
T Consensus 532 kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~------~--~i~iknAH~~g----Vn~v~wld-e~tvvSsG~Da~iK~ 598 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDTNVIIYSVKKPA------K--HIIIKNAHLGG----VNSVAWLD-ESTVVSSGQDANIKV 598 (603)
T ss_pred eEEEEEeCCCceEEEeccccceEEEEEccChh------h--heEeccccccC----ceeEEEec-CceEEeccCcceeEE
Confidence 99999999999999999999999999654221 1 15555677654 99999975 467999999999999
Q ss_pred EeC
Q 005235 705 YCH 707 (707)
Q Consensus 705 Wdl 707 (707)
|++
T Consensus 599 W~v 601 (603)
T KOG0318|consen 599 WNV 601 (603)
T ss_pred ecc
Confidence 985
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-30 Score=250.12 Aligned_cols=287 Identities=21% Similarity=0.336 Sum_probs=228.8
Q ss_pred ccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC---eEEEEEec--C
Q 005235 343 VKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG---RCLRVLEI--G 417 (707)
Q Consensus 343 i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg---~~l~~l~~--~ 417 (707)
++.|..|+..+++.|.. +.+||+||.|..||||+...+ .|...+.. .
T Consensus 10 ~~gh~~r~W~~awhp~~----------------------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGK----------------------------GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK 61 (312)
T ss_pred ecCCCCcEEEEEeccCC----------------------------ceEEEeecCCceEEEEecCCCCcEEEEEeccccch
Confidence 45566688888887651 348999999999999998853 34444433 7
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
..|.+|+|+|.| +.|++++.|.++.||.-..++.. ....+.+|...|
T Consensus 62 rsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe--------------------------------cv~~lEGHEnEV 108 (312)
T KOG0645|consen 62 RSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE--------------------------------CVATLEGHENEV 108 (312)
T ss_pred heeeeeeecCCC-cEEEEeeccceEEEeecCCCcee--------------------------------EEeeeeccccce
Confidence 899999999999 48888899999999985433221 122477999999
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-C--C
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-K--Q 570 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~--~ 570 (707)
.|++|+++|.|||++++|. +|-||.+....... ..+ .|...|..+.|||...+|++++ |++|++|.-. . -
T Consensus 109 K~Vaws~sG~~LATCSRDK---SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 109 KCVAWSASGNYLATCSRDK---SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred eEEEEcCCCCEEEEeeCCC---eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 9999999999999999988 99999998543321 445 8999999999999999999999 9999999866 2 3
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.++.+|.+|...|.+++|+|.|..|++++.|++|+||-+.+. .-.-|..++..++|. .-.|||++.|+.|+||
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEE
Confidence 789999999999999999999999999999999999986533 112477899999998 4589999999999999
Q ss_pred ecccccCCCCCCcccce-EEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLIVPL-EILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl-~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl 707 (707)
.-. +-...+....+ +.-..|... |++++|.|. ...|++||.||.|++|.|
T Consensus 259 ~~s---~~~d~p~~~l~~~~~~aHe~d----VNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 259 KES---DSPDEPSWNLLAKKEGAHEVD----VNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred Eec---CCCCCchHHHHHhhhcccccc----cceEEEcCCCCCceeecCCCceEEEEEe
Confidence 543 21122332222 234456665 999999995 678999999999999975
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-29 Score=260.47 Aligned_cols=265 Identities=26% Similarity=0.341 Sum_probs=230.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||.|++|++.+++....+.. ...+.++.|+|++ ..+++++.++.|.+|++..+..
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~--------------- 85 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGEC--------------- 85 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccc---------------
Confidence 4899999999999999999887777766 6778899999998 4688888899999999765311
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+..|...|.++.|++++.++++++.++ .|.+|++.+.... ..+ .+...+.+++
T Consensus 86 -------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~-~~~~~~~~~i~~~~ 142 (289)
T cd00200 86 -------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---TIKVWDVETGKCL-TTLRGHTDWVNSVA 142 (289)
T ss_pred -------------------eEEEeccCCcEEEEEEcCCCCEEEEecCCC---eEEEEECCCcEEE-EEeccCCCcEEEEE
Confidence 112446778999999999999998888777 9999999977766 667 7888999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
|+|++.++++++ ++.|++||+.+++.+..+..+...|.+++|+|++..|++++.++.|++||+..+ .++..+..|...
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~ 221 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG 221 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc
Confidence 999999999998 999999999999888889888889999999999999999999999999999876 677888789999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|.+++|+|++.++++++.||.|++|+.. ... ++..+.+|... |.+++|+|++.+|++++.||.|++|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~------~~~---~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLR------TGE---CVQTLSGHTNS----VTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcC------Cce---eEEEccccCCc----EEEEEECCCCCEEEEecCCCeEEec
Confidence 9999999999999999889999999643 322 36677788776 9999999999999999999999999
Q ss_pred e
Q 005235 706 C 706 (707)
Q Consensus 706 d 706 (707)
+
T Consensus 289 ~ 289 (289)
T cd00200 289 D 289 (289)
T ss_pred C
Confidence 6
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=4.3e-31 Score=289.58 Aligned_cols=269 Identities=18% Similarity=0.224 Sum_probs=222.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCC-------------------------------eEEEEEec-CCcEEEEEEccCCC
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESG-------------------------------RCLRVLEI-GEAIQYVAWNPLPE 430 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg-------------------------------~~l~~l~~-~~~V~~v~~spdg~ 430 (707)
-|+.+++++|.|-.|..|++|.+... ...+++-+ .++|..+.|+|+.
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~- 463 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR- 463 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc-
Confidence 36667778888888889999987631 11122222 8999999999998
Q ss_pred ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEE
Q 005235 431 LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS 510 (707)
Q Consensus 431 ~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la 510 (707)
..|++++.|++|++|.+.+.... ....+|..+|.++.|+|.|-|||
T Consensus 464 rfLlScSED~svRLWsl~t~s~~----------------------------------V~y~GH~~PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCL----------------------------------VIYKGHLAPVWDVQFAPRGYYFA 509 (707)
T ss_pred cceeeccCCcceeeeecccceeE----------------------------------EEecCCCcceeeEEecCCceEEE
Confidence 58889999999999998765321 13459999999999999999999
Q ss_pred EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235 511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAI 588 (707)
Q Consensus 511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~ 588 (707)
|++.|+ +.++|........ +.| +|.+.|.|+.|||+..++++|+ |++||+||+.+|..++.|.+|.++|++|+|
T Consensus 510 tas~D~---tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 510 TASHDQ---TARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred ecCCCc---eeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 999988 9999999988777 778 9999999999999999999998 999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC--------C-
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL--------N- 659 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl--------~- 659 (707)
||+|.+|++|+.||.|.+||+..+ .++..+.+|++.|.++.||.+|..||+|+.|++|++||+...... .
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~ 664 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN 664 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence 999999999999999999999987 889999999999999999999999999999999999987643221 0
Q ss_pred ------CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 660 ------QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 660 ------~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
.+.....+..+..-..+ |..+.|.-..-.|+.
T Consensus 665 ~~~~~~~~~~~~llgs~~tK~tp----v~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 665 SAITQENNASSLLLGSFYTKNTP----VVGLHFTRRNLLLAV 702 (707)
T ss_pred ccccccCCCCcceeeeeeecCce----EEEEEEeccceeEEe
Confidence 11122234555554444 888888776533333
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=1.2e-30 Score=261.98 Aligned_cols=271 Identities=18% Similarity=0.205 Sum_probs=234.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
..+++||.|++++|||+.+|++..++.+ -..|..|++|+-. .++++++.|+.|+.||+......
T Consensus 164 ~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvI-------------- 228 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVI-------------- 228 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhH--------------
Confidence 5899999999999999999999999996 8899999999988 48999999999999998654211
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
....+|-+.|.|++.+|.-+.|++++.|. +++|||+++.... ..+ +|..+|.+|.
T Consensus 229 --------------------R~YhGHlS~V~~L~lhPTldvl~t~grDs---t~RvWDiRtr~~V-~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 229 --------------------RHYHGHLSGVYCLDLHPTLDVLVTGGRDS---TIRVWDIRTRASV-HVLSGHTNPVASVM 284 (460)
T ss_pred --------------------HHhccccceeEEEeccccceeEEecCCcc---eEEEeeecccceE-EEecCCCCcceeEE
Confidence 12458999999999999999999999998 9999999999988 888 9999999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
+.|..+.+++|+ |++|++||++.++...++..|...+.+++.||....+|+++.| .|+-|++..+ ..+..+.+|+..
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~i 362 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAI 362 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-chhhccccccce
Confidence 999999999999 9999999999999999999999999999999999999999987 6899999877 556679999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|++++.+.|+ ++++|++.|.|.+||.+..........++....+.. ..||.+.+|...|..|+||.+|.+|++|
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s-----EagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES-----EAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccc-----ccceeEEeecccCceEEeccCCcceEEE
Confidence 9999998776 678999999999997654433333222222222222 3469999999999999999999999999
Q ss_pred e
Q 005235 706 C 706 (707)
Q Consensus 706 d 706 (707)
.
T Consensus 437 k 437 (460)
T KOG0285|consen 437 K 437 (460)
T ss_pred e
Confidence 4
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=6.4e-30 Score=265.09 Aligned_cols=302 Identities=18% Similarity=0.224 Sum_probs=258.0
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCC--CeEEE--EEec-----------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235 385 PVACYLEYKGSTDGTVRIWEVES--GRCLR--VLEI-----------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL 449 (707)
Q Consensus 385 p~~~~~l~sgs~DgtVrIWd~~t--g~~l~--~l~~-----------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~ 449 (707)
|....++++|+.|-+.|+|++.. +.+.. .+++ +..|++|+|+.+| ..|+++..+|.+++|+...
T Consensus 188 P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G 266 (524)
T KOG0273|consen 188 PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG 266 (524)
T ss_pred chhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC-CeEEEeecCcEEEEEecCc
Confidence 34445899999999999999874 22211 1221 5789999999999 4788888999999999876
Q ss_pred CCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEE
Q 005235 450 GNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIF 522 (707)
Q Consensus 450 ~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~ 522 (707)
... .+..|..+++++.+. +++++-|+++.+|+...+.... +.-|..+-..|.|-. ..-|++.+.|+ .|+
T Consensus 267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~---~i~ 342 (524)
T KOG0273|consen 267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDG---CIH 342 (524)
T ss_pred hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCc---eEE
Confidence 543 567788999999987 8999999999999997766654 556777768899974 46799999988 999
Q ss_pred EEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--------
Q 005235 523 MHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-------- 592 (707)
Q Consensus 523 Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-------- 592 (707)
|+.+...... .+| +|.+.|.++.|.|.+.+|++++ |++++||+.........|..|...|..+.|+|.|
T Consensus 343 V~kv~~~~P~-~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 343 VCKVGEDRPV-KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEEecCCCcc-eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 9999988888 888 9999999999999999999999 8999999999888999999999999999999965
Q ss_pred -CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235 593 -DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR 671 (707)
Q Consensus 593 -~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~ 671 (707)
..|++++.|++|++||+..+ .++.+|..|+.+|.+|+|+|+|.++|+|+.||.|.||+. ....+ ++...
T Consensus 422 ~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~------~~~~l---~~s~~ 491 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST------KTGKL---VKSYQ 491 (524)
T ss_pred CceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc------cchhe---eEeec
Confidence 57899999999999999987 899999999999999999999999999999999999944 34433 56666
Q ss_pred CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+... |..++|+-+|..|..+-.||.+++-||
T Consensus 492 ~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 GTGG-----IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 5543 999999999999999999999999875
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2e-29 Score=247.97 Aligned_cols=245 Identities=16% Similarity=0.205 Sum_probs=209.7
Q ss_pred EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235 412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
+++++ .+.|.++.|++|. +.|++++.||.+.|||.-+... ...+
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK----------------------------------~hai 93 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNK----------------------------------VHAI 93 (343)
T ss_pred EEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccc----------------------------------eeEE
Confidence 56666 7899999999999 5899999999999999655422 1123
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC--c---eeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEE
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK--L---SHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRV 564 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~--~---~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~i 564 (707)
.-....|..++|+|.|+++|+|+.|. .+.||++.+. . ...+.+ +|.+.+.|..|-+|+.+|..++|.++.+
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN---~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDN---KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCAL 170 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCc---eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEE
Confidence 34567899999999999999999988 9999999855 1 111556 9999999999999776555555999999
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235 565 YDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 565 wDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~ 643 (707)
||+.+++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+ .+.++|.+|...|++|.|+|+|.-|++||+
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCC
Confidence 99999999999999999999999999 9999999999999999999988 889999999999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|+++++|| +..... +..+.... ...||++++||-.|++|++|..|.++.+||
T Consensus 250 D~tcRlyD------lRaD~~---~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 250 DATCRLYD------LRADQE---LAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred CceeEEEe------ecCCcE---EeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEee
Confidence 99999995 444443 34444222 235699999999999999999999999998
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-29 Score=246.22 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=206.6
Q ss_pred EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235 412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
.++++ .+.|+.++..+.+...++.++.|.++.+|++...+... +..+..+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-----------------------------G~~~r~~ 59 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-----------------------------GVPVRRL 59 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-----------------------------Cceeeee
Confidence 34555 78999999998865678888899999999976542110 1112246
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
.+|...|..++.+++|+++++++.|+ .+++||+.+++.. +.| +|...|.+++|+++...+++|+ |++|.+||+.
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~---~lrlWDl~~g~~t-~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDG---TLRLWDLATGEST-RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eccceEecceEEccCCceEEeccccc---eEEEEEecCCcEE-EEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 78999999999999999999999999 9999999999887 888 9999999999999999999999 9999999987
Q ss_pred CCeEEEEEeCC--CCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 569 KQRLIKKLETG--LKEVSSIAIHPA--GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 569 ~~~~~~~l~~~--~~~I~sl~~spd--g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
.+ +..++..+ ..+|+|+.|+|+ ..+|+++|.|++|++||+++. +....+.+|++.++.+++||||.++++|+.|
T Consensus 136 g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 136 GV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred cc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCC
Confidence 54 44444443 789999999998 689999999999999999976 7788899999999999999999999999999
Q ss_pred CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+.+| |+.+... +..+. |... |.+++|+|+..||+.+.+. .|+|||+
T Consensus 214 g~~~Lw------dL~~~k~---lysl~-a~~~----v~sl~fspnrywL~~at~~-sIkIwdl 261 (315)
T KOG0279|consen 214 GEAMLW------DLNEGKN---LYSLE-AFDI----VNSLCFSPNRYWLCAATAT-SIKIWDL 261 (315)
T ss_pred ceEEEE------EccCCce---eEecc-CCCe----EeeEEecCCceeEeeccCC-ceEEEec
Confidence 999999 5555544 55554 4444 9999999998888776644 5999986
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=267.17 Aligned_cols=317 Identities=16% Similarity=0.180 Sum_probs=264.6
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCc--hhcccc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNE--EEQRRV 458 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~--~~~~~~ 458 (707)
.|.....++++|-..|...++++..-.+++.+.. ...|..++|+..|+ .|+.+|. =|.+.||++.+... ..++|.
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeeccccc
Confidence 4777788999999999999999999999999988 68999999999995 3433333 36999999988765 345678
Q ss_pred cceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 459 KDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 459 ~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
..+.++.++ +++|+.|+.|++|+...+.... +..|++.|+.+.|+..|+.+++.+.|| +|+.||+...+.-
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG---tVRAwDlkRYrNf 427 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG---TVRAWDLKRYRNF 427 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC---eEEeeeeccccee
Confidence 888888887 8999999999999998876654 778999999999999999999999999 9999999999888
Q ss_pred eeee--ccCCCeEEEEEeCCCCEEEEEe-C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 533 RIPF--KLHGLPVSSVFHPTRSIFFVST-K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 533 ~~~~--~~~~~V~~v~fspd~~~l~v~s-d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
++| .......|++..|.|.++++|+ | =.|.+|++++|+++-.|.+|.++|.+++|+|.|..|++||.|.+|++||
T Consensus 428 -RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 -RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred -eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 888 4445566888899999999988 4 5799999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc---------CCCCCCcccceEEeeCCCCCCCC
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS---------DLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~---------Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
+-.....+.++. +...+.+++|+|+|.-||+++.||.|.+||..... |+..+... ...+.......+.
T Consensus 507 if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~--~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 507 IFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE--TDRITAENSAKGK 583 (893)
T ss_pred eeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc--cceeehhhcccCC
Confidence 976655666776 67789999999999999999999999999875321 11111111 1112222222234
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..+.+++++||..|++||....|+||++
T Consensus 584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 584 TFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred ceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 5899999999999999999999999985
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.9e-28 Score=292.97 Aligned_cols=282 Identities=15% Similarity=0.164 Sum_probs=223.2
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCC----e----EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESG----R----CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg----~----~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~ 454 (707)
.|..++.++++|+.|++|+||++.+. . .+..+.....|.+++|+|.....|++++.|++|++||+.++..
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-- 567 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-- 567 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--
Confidence 36667789999999999999997532 1 2233444678999999986435788888999999999765421
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
...+.+|.+.|.+++|+| ++.+|++++.|+ .|++||+.++...
T Consensus 568 --------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---~v~iWd~~~~~~~- 611 (793)
T PLN00181 568 --------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDG---SVKLWSINQGVSI- 611 (793)
T ss_pred --------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCC---EEEEEECCCCcEE-
Confidence 113458999999999997 789999999998 9999999988776
Q ss_pred eeeccCCCeEEEEEe-CCCCEEEEEe-CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 534 IPFKLHGLPVSSVFH-PTRSIFFVST-KKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 534 ~~~~~~~~V~~v~fs-pd~~~l~v~s-dg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
..+.....+.++.|+ +++.+|++|+ |+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++|+.|+.|++||+.
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 666555789999995 4688999988 9999999998765 567788999999999997 68899999999999999997
Q ss_pred CC-----CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCC--CCcccce--EEeeCCCCCCCCCe
Q 005235 611 LS-----SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ--NPLIVPL--EILRGHTSSNGRGV 681 (707)
Q Consensus 611 ~~-----~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~--~~~~~pl--~~l~gh~~~~~~gV 681 (707)
.. ..++..+.+|...+.+++|+|++.+||+|+.||+|+||+......+.. .....++ ..+..|... |
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~----V 766 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF----I 766 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE----E
Confidence 43 256888999999999999999999999999999999997532210000 0000001 112233333 9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 682 MDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 682 ~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+++|+|++..|++|+.||+|+||++
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999999999986
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=269.38 Aligned_cols=275 Identities=18% Similarity=0.295 Sum_probs=234.7
Q ss_pred CCCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 379 KDLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 379 ~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
..+++||....++++||.|+.|+||++-. ++|+++|.+ ..+|..++|+++| ..+++++.|+.|++||+++|...
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~--- 293 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVL--- 293 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEE---
Confidence 35667888889999999999999999986 999999998 8999999999999 58999999999999999987432
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
........++|+.|+|++ +.|++|+.|+ .|+.||++.+... ..
T Consensus 294 --------------------------------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~---ki~~wDiRs~kvv-qe 337 (503)
T KOG0282|consen 294 --------------------------------SRFHLDKVPTCVKFHPDNQNIFLVGGSDK---KIRQWDIRSGKVV-QE 337 (503)
T ss_pred --------------------------------EEEecCCCceeeecCCCCCcEEEEecCCC---cEEEEeccchHHH-HH
Confidence 122345678999999998 8899999988 9999999999987 88
Q ss_pred e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
+ .|-+.|..+.|-+++..+++++ |++|+||+.+..-+++... .+.-...||..+|++.++++-+.|+.|.+|.+...
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 8 8999999999999999999998 7999999999876665433 23334678999999999999999999999997642
Q ss_pred --CcceEEeecCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 613 --SKPYRVLKCHP--KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 613 --~~~~~~l~~h~--~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
....+.+.+|. +.-..|.|||||.+|++|+.||.+.+|| ..+..+ +..+.+|... +..+.|||
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd------wkt~kl---~~~lkah~~~----ci~v~wHP 484 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD------WKTTKL---VSKLKAHDQP----CIGVDWHP 484 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee------chhhhh---hhccccCCcc----eEEEEecC
Confidence 13456788886 3456789999999999999999999994 444444 7788999887 99999999
Q ss_pred CCC-EEEEEeCCCcEEEEe
Q 005235 689 RQP-WLFTAGADSVIRLYC 706 (707)
Q Consensus 689 dg~-~L~s~g~Dg~IrlWd 706 (707)
..+ -+||||.||.|++|+
T Consensus 485 ~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 485 VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceeEecccCceeEecC
Confidence 776 689999999999996
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-29 Score=261.20 Aligned_cols=279 Identities=20% Similarity=0.275 Sum_probs=241.2
Q ss_pred EEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC----Cc------------hhcccccceeeeccc-----cc
Q 005235 411 LRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG----NE------------EEQRRVKDLLHVETP-----TA 469 (707)
Q Consensus 411 l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~----~~------------~~~~~~~~v~~~~~~-----~~ 469 (707)
.+.+.+..+|.+.+|+|-.+..+.+++.+...++|++... .. .....+..+.++.|+ ++
T Consensus 172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3445568899999999987445666677889999998741 11 111234667778776 89
Q ss_pred ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235 470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH 548 (707)
Q Consensus 470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs 548 (707)
+|..+|.+++|+..+.....+..|.++|.++.|+.+|+||++++.|+ ++.+||..++... ..| -|..+...|.|-
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~---ttilwd~~~g~~~-q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG---TTILWDAHTGTVK-QQFEFHSAPALDVDWQ 327 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCc---cEEEEeccCceEE-EeeeeccCCccceEEe
Confidence 99999999999999999888999999999999999999999999999 9999999999887 778 566666788998
Q ss_pred CCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235 549 PTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 549 pd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
.+..+..+++|+.|+||-+....+++++.+|.+.|++|.|+|.|.+|+++|.|++++||.+... .....|.+|...|..
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYT 406 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceee
Confidence 8777666666999999999999999999999999999999999999999999999999999766 778899999999999
Q ss_pred EEEcCCCC---------EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 629 VAFHRSYP---------LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 629 vafspdg~---------llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
+.|+|.|+ .+++++.|++|++||+. . .+|+..|..|+.+ |.+++|+|+|++||+|+.|
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~------~---gv~i~~f~kH~~p----VysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE------S---GVPIHTLMKHQEP----VYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEcc------C---CceeEeeccCCCc----eEEEEecCCCcEEEecCCC
Confidence 99999764 78999999999999653 2 2468999999998 9999999999999999999
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
|.|.+|+.
T Consensus 474 g~V~iws~ 481 (524)
T KOG0273|consen 474 GCVHIWST 481 (524)
T ss_pred CeeEeccc
Confidence 99999974
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=261.22 Aligned_cols=264 Identities=15% Similarity=0.241 Sum_probs=228.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
..+++|..|.||+|||..+-.|++.+.+ .+.|.|+.|... .|+++++|.+|++||+.+++..
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l-------------- 270 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL-------------- 270 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh--------------
Confidence 4789999999999999999999998888 899999999764 5889999999999999887542
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVS 544 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~ 544 (707)
..+++|...|..+.|+ ..++++++.|. ++.+||+....... ..+ +|.+.|+.
T Consensus 271 --------------------~tlihHceaVLhlrf~--ng~mvtcSkDr---siaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 271 --------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred --------------------hHHhhhcceeEEEEEe--CCEEEEecCCc---eeEEEeccCchHHHHHHHHhhhhhheee
Confidence 2356899999999997 56999999988 99999998765321 344 99999999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
|.|+. +++++++ |++|++|++.+++.++++.+|...|.|+.+ .|+++++||.|.+|++||+..+ .+++.|.+|.
T Consensus 326 Vdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHE 400 (499)
T KOG0281|consen 326 VDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHE 400 (499)
T ss_pred ecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchH
Confidence 99974 4888888 999999999999999999999999999988 4899999999999999999987 8999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
.-|+++.| +.+.++||+.||+|+|||+...-|-.......++..+..|++. |..+.| |...|++++.|.+|.
T Consensus 401 eLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR----VFrLQF--D~fqIvsssHddtIL 472 (499)
T KOG0281|consen 401 ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR----VFRLQF--DEFQIISSSHDDTIL 472 (499)
T ss_pred Hhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccce----eEEEee--cceEEEeccCCCeEE
Confidence 99999999 5678999999999999987655444333333467778888877 999999 556799999999999
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
|||+
T Consensus 473 iWdF 476 (499)
T KOG0281|consen 473 IWDF 476 (499)
T ss_pred EEEc
Confidence 9985
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=247.30 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=235.5
Q ss_pred ccCCCCCCCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEE
Q 005235 281 LAYIPAPKPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYL 355 (707)
Q Consensus 281 ~~~~papk~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l 355 (707)
...+-||.+.||||.. .|+|+|.+|+|++. ||.++||+-+....... .+++|-..+++|.+
T Consensus 33 ts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~----------Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~ 98 (338)
T KOG0265|consen 33 TSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGS----------DRAIVLWNVYGDCENFW----VLKGHSGAVMELHG 98 (338)
T ss_pred cccccchhhhcCCCcceEEEEEECCCCCeEeecCC----------cceEEEEecccccccee----eeccccceeEeeee
Confidence 3457789999999987 59999999999988 88887776554433221 12344444588888
Q ss_pred cCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEE
Q 005235 356 CPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVL 434 (707)
Q Consensus 356 ~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~ll 434 (707)
.++. +.++++|.|.+|+.||+++|++++.++. ...|+++.-+.-|...+.
T Consensus 99 ~~d~-----------------------------s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 99 MRDG-----------------------------SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred ccCC-----------------------------CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence 7544 6999999999999999999999999988 788888886656643333
Q ss_pred EEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235 435 AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 435 a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
+++.|++++|||+..... ..+......+++++|...+..+.+|+-
T Consensus 150 SgsdD~t~kl~D~R~k~~-----------------------------------~~t~~~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEA-----------------------------------IKTFENKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred ecCCCceEEEEeecccch-----------------------------------hhccccceeEEEEEecccccceeeccc
Confidence 445678888888765322 112244667899999999999999999
Q ss_pred CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC----CeEEEEEeCCCCC----eE
Q 005235 515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK----QRLIKKLETGLKE----VS 584 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~----I~ 584 (707)
|+ .|++||+++.... ..+ +|...|+.+..+|+|.++.+-+ |.++++||++- +++++.+.+|... ..
T Consensus 195 dn---~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 DN---DIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cC---ceeeeccccCcce-EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 88 9999999999887 788 9999999999999999999988 99999999874 5678888876532 56
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.++|+|+++.+.+|+.|+.+++||.... ..+..+.+|.+.|++++|||..++|.+|+.|.+|++=
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 7799999999999999999999999765 6788899999999999999999999999999998763
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.1e-29 Score=276.51 Aligned_cols=272 Identities=22% Similarity=0.290 Sum_probs=233.7
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
.|..++..+++++.|+.+++|++.+++ .++.+.. ...|.+++|+|++. .+++++.|.+|+||++....
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~-------- 236 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG-------- 236 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC--------
Confidence 355566789999999999999998777 6666543 88999999999994 78888899999999973321
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL 538 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~ 538 (707)
.....+.+|...|++++|+|+|+.+++|+.|+ +|+|||+.++.+. ..+ .|
T Consensus 237 -------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~-~~l~~h 287 (456)
T KOG0266|consen 237 -------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECV-RKLKGH 287 (456)
T ss_pred -------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEE-Eeeecc
Confidence 11234669999999999999999999999999 9999999998888 888 99
Q ss_pred CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
.+.|.+++|++++.+|++++ |+.|+|||+.++. ++..+..+... ++++.|+|+|.+|++++.|+.+++||+..+
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~- 366 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG- 366 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-
Confidence 99999999999999999998 9999999999998 56777766555 999999999999999999999999999977
Q ss_pred cceEEeecCCCC---EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCC
Q 005235 614 KPYRVLKCHPKD---ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPR 689 (707)
Q Consensus 614 ~~~~~l~~h~~~---I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspd 689 (707)
.....+.+|... +.+..+++.+.++++|+.|+.|.+|+ +.+.. .+..+.+| ... |..++|+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~------~~s~~---~~~~l~~h~~~~----~~~~~~~~~ 433 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD------SSSGG---ILQRLEGHSKAA----VSDLSSHPT 433 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe------CCccc---hhhhhcCCCCCc----eeccccCCC
Confidence 778888888764 44556678999999999999999995 44433 36788899 666 999999999
Q ss_pred CCEEEEEe--CCCcEEEEe
Q 005235 690 QPWLFTAG--ADSVIRLYC 706 (707)
Q Consensus 690 g~~L~s~g--~Dg~IrlWd 706 (707)
..++++++ .|+.|++|.
T Consensus 434 ~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cCeeeecCcCCCceEEEec
Confidence 99999998 799999995
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=235.49 Aligned_cols=286 Identities=17% Similarity=0.133 Sum_probs=231.1
Q ss_pred CCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCC
Q 005235 302 LEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRK 379 (707)
Q Consensus 302 ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~ 379 (707)
.-+|+|++. |..+ |-...+.|.|+++.-+..| ..|.+.|+.+
T Consensus 10 ~viLvsA~Y----------DhTIRfWqa~tG~C~rTiqh~dsqV-------NrLeiTpdk~------------------- 53 (311)
T KOG0315|consen 10 PVILVSAGY----------DHTIRFWQALTGICSRTIQHPDSQV-------NRLEITPDKK------------------- 53 (311)
T ss_pred ceEEEeccC----------cceeeeeehhcCeEEEEEecCccce-------eeEEEcCCcc-------------------
Confidence 357888665 4444 3344566778886544444 4555665542
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
.|++|+ ...||+||+.++. .+.+|.+ ...|.+|.|..+| +.+++++.||+++|||+.....
T Consensus 54 ----------~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~---- 117 (311)
T KOG0315|consen 54 ----------DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSC---- 117 (311)
T ss_pred ----------hhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCccc----
Confidence 555554 4569999999875 5788888 6999999999999 5899999999999999865311
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
.....|.++|++|..||+...|+++..+| .|+|||+....+....+
T Consensus 118 -------------------------------qR~~~~~spVn~vvlhpnQteLis~dqsg---~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 118 -------------------------------QRNYQHNSPVNTVVLHPNQTELISGDQSG---NIRVWDLGENSCTHELI 163 (311)
T ss_pred -------------------------------chhccCCCCcceEEecCCcceEEeecCCC---cEEEEEccCCccccccC
Confidence 12447889999999999999999999988 99999999987762333
Q ss_pred -ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 537 -KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 537 -~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
.....|+++..+|+|..++++. .|.+++|++-.. .++.+++.|.+.|..+.+||++++||++|.|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 6668899999999999999998 699999998754 56778899999999999999999999999999999999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF 686 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f 686 (707)
.+..-+.-..+.+|...++.++||.+|.+|++|+.|+++++| ++..+.. +....||... ..+++.
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW------~~~~~k~---v~qy~gh~K~----~vc~~l 308 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW------DLSAGKE---VRQYQGHHKA----AVCVAL 308 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec------ccccCce---eeecCCcccc----cEEEEe
Confidence 987646667889999999999999999999999999999999 5555554 7788888765 555554
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=246.45 Aligned_cols=298 Identities=13% Similarity=0.134 Sum_probs=246.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc--cccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR--RVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~--~~~~v~~~~ 465 (707)
.+++|||.|....||++.+|..+..+.+ .+.|+|+.|+.+| ..|+++..+|.|+||...++...... ....+.=+.
T Consensus 77 ~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 77 NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 4999999999999999999998877777 8999999999999 47778889999999999988543222 222222222
Q ss_pred cc-----ccccCCCCcEEEEecCC-ccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--c
Q 005235 466 TP-----TAPDDNMASIVSWLQHD-KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--K 537 (707)
Q Consensus 466 ~~-----~~~~~~d~~i~iW~~~~-~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~ 537 (707)
+. ++.|+.||.+..|.++. .....+.+|..++++=.|.|+|+.++++..|| +|++|++.+++.. ..+ .
T Consensus 156 WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg---ti~~Wn~ktg~p~-~~~~~~ 231 (399)
T KOG0296|consen 156 WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG---TIIVWNPKTGQPL-HKITQA 231 (399)
T ss_pred ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc---eEEEEecCCCcee-EEeccc
Confidence 22 78899999999999998 44556889999999999999999999999999 9999999999776 555 3
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC--------CCCCeEEEEEcC---CCCEEEEEECCCcEE
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET--------GLKEVSSIAIHP---AGDNLIVGSREGKLC 605 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~--------~~~~I~sl~~sp---dg~~L~sGs~Dg~I~ 605 (707)
......++.++..+..++.|+ ++.+++.+..+++.+..+.+ +...+.|+.+.| .-.+.|+|+.||+|.
T Consensus 232 e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 232 EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 456778899999999999888 89999999999988877663 223345555544 446789999999999
Q ss_pred EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE
Q 005235 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK 685 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~ 685 (707)
|||+... ++.+.+ .|..+|..+.|-+ ..+|++++.+|.|+.||. +++.+ +.++.||... |.+++
T Consensus 312 iyD~a~~-~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa------RtG~l---~~~y~GH~~~----Il~f~ 375 (399)
T KOG0296|consen 312 IYDLAAS-TLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA------RTGQL---KFTYTGHQMG----ILDFA 375 (399)
T ss_pred EEecccc-hhheec-cCCCceEEEEEcC-cchheeeccCceEEeeec------cccce---EEEEecCchh----eeEEE
Confidence 9999876 555544 4888999999998 778999999999999954 44544 8899999987 99999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 005235 686 FHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 686 fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+|+.++++|+|.|++.+||+.
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEec
Confidence 9999999999999999999974
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-28 Score=246.51 Aligned_cols=270 Identities=20% Similarity=0.283 Sum_probs=223.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
...+++|+.||++|||+. .|++..++.+ .++|.+++|.-..+ ..+++++.|.++++|.++.++....
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------- 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------- 184 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------
Confidence 578999999999999995 6888888887 88999888854331 2489999999999999876643211
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC---------------
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK--------------- 529 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~--------------- 529 (707)
......+|...|-+|+..++|..|++|+.|. .|.||+....
T Consensus 185 ---------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 185 ---------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ---------------------HHhHhcccccceeEEEecCCCCeEEeecccc---eeeecccCCCccccccccchhhhhh
Confidence 0111339999999999999999999999998 9999993211
Q ss_pred ---------ceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235 530 ---------LSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 530 ---------~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG 598 (707)
+.....+ +|..+|.+|.|++ ...+++++ |.+|+.||+.++.++.++.+. ..++|++.+|..++||+|
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~g 318 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASG 318 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeec
Confidence 0111344 8999999999998 55677777 999999999999999888866 789999999999999999
Q ss_pred ECCCcEEEEECCCCC--cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 599 SREGKLCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
+.|..|++||.+++. .+..+|.+|...|.+|.|||... +|+|||.|+++++||++ +.. .|+..+.+|..
T Consensus 319 ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR------S~k--~plydI~~h~D 390 (423)
T KOG0313|consen 319 SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR------STK--APLYDIAGHND 390 (423)
T ss_pred CCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec------cCC--CcceeeccCCc
Confidence 999999999998754 45678899999999999999765 88999999999999654 322 26899999998
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
. |.++.|.. +..|+|||+|.+|+++.
T Consensus 391 K----vl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 391 K----VLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred e----EEEEeccC-CceEEeccCcceEEEec
Confidence 8 99999974 56899999999999974
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=262.86 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=229.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
.++++-..|.|.||+.+|...++.++. .-+|.+..|-+..+ .+++++.|..|+||+..+++..
T Consensus 27 w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV--------------- 90 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKV--------------- 90 (794)
T ss_pred eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecccceee---------------
Confidence 666778899999999999999999998 78999999998874 7889999999999998886432
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEE
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVF 547 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~f 547 (707)
..+..|..-|.|++.||.-.++++++.|- .|++|+....-.+.+.| +|..-|++++|
T Consensus 91 -------------------~~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 91 -------------------KTFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred -------------------EEeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 24568999999999999999999999998 99999999887665888 99999999999
Q ss_pred eCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 548 HPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 548 spd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
.|. .+.|++++ |++|+||.+....+..+|.+|...|+|+++-+.| .+|++|+.|..|+|||.++. .++++|.+|.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt 227 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHT 227 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccc
Confidence 995 56788888 9999999999999999999999999999998866 59999999999999999987 8999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
..|..+.|||.-++++|||.||+|+|||..+|.- ..+|.-.-.. |++++-++.+..++.|...|.|.
T Consensus 228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l---------E~tLn~gleR----vW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL---------EKTLNYGLER----VWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred ccceEEEecCCCcEEEEecCCccEEEecCcceeh---------hhhhhcCCce----EEEEeecCCCCeEEEeccCCcEE
Confidence 9999999999999999999999999998776541 2223322233 89999888888888888777664
Q ss_pred E
Q 005235 704 L 704 (707)
Q Consensus 704 l 704 (707)
+
T Consensus 295 v 295 (794)
T KOG0276|consen 295 V 295 (794)
T ss_pred E
Confidence 3
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.2e-28 Score=265.32 Aligned_cols=266 Identities=17% Similarity=0.270 Sum_probs=232.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
+..++++| ..+.|+||+..+++|++++... .+.|..|.|.+ .+++.+...|.+.++|+.+....
T Consensus 384 d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~------------- 447 (888)
T KOG0306|consen 384 DSILLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGD-RYIVLGTKNGELQVFDLASASLV------------- 447 (888)
T ss_pred Cceeeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh-------------
Confidence 33455554 4568999999999999999876 88999999988 58889999999999997654221
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce----e--------ee
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS----H--------RI 534 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~----~--------~~ 534 (707)
.....|.+.|.+++.+|++..+++|+.|. +|++|++.--.. + ..
T Consensus 448 ---------------------Eti~AHdgaIWsi~~~pD~~g~vT~saDk---tVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 448 ---------------------ETIRAHDGAIWSISLSPDNKGFVTGSADK---TVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ---------------------hhhhccccceeeeeecCCCCceEEecCCc---EEEEEeEEEEeccCcccceeeeeccce
Confidence 12448999999999999999999999988 999999742111 1 02
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 535 PFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 535 ~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
.+.....|.|+.+|||+++|+++- |++|+||-+.+-+..-.|.+|.-+|.||++|||+..+++||.|+.|++|-++-+
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG- 582 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG- 582 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-
Confidence 335577899999999999999998 999999999999999999999999999999999999999999999999999987
Q ss_pred cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693 (707)
Q Consensus 614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L 693 (707)
.+-+.+-+|...|.+|.|-|...+|.+||.|+.|+-||+..+. .+..+.+|... |++++.+|+|.++
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---------~iq~L~~H~~e----v~cLav~~~G~~v 649 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---------EIQKLDGHHSE----VWCLAVSPNGSFV 649 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh---------hheeeccchhe----eeeeEEcCCCCeE
Confidence 7889999999999999999999999999999999999765432 47899999988 9999999999999
Q ss_pred EEEeCCCcEEEEe
Q 005235 694 FTAGADSVIRLYC 706 (707)
Q Consensus 694 ~s~g~Dg~IrlWd 706 (707)
+|+|.|.+||+|.
T Consensus 650 vs~shD~sIRlwE 662 (888)
T KOG0306|consen 650 VSSSHDKSIRLWE 662 (888)
T ss_pred EeccCCceeEeee
Confidence 9999999999995
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.2e-28 Score=239.54 Aligned_cols=269 Identities=19% Similarity=0.254 Sum_probs=229.0
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
|.+++..++|||.|..|.+|++.. -+-..++++ .++|..+.|.+|+ ..+++++.|.+|+.||..+|...
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~~-------- 125 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKRI-------- 125 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccceee--------
Confidence 555678999999999999999642 233344555 8999999999999 48999999999999998887432
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE-EEEEeCCCCccEEEEEECCCCceeeeeeccCC
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY-LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG 540 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~ 540 (707)
.....|..-|+.+.-+.-|.. +.+++.|+ ++++||+++.... ..+..+-
T Consensus 126 --------------------------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~---t~kl~D~R~k~~~-~t~~~ky 175 (338)
T KOG0265|consen 126 --------------------------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDG---TLKLWDIRKKEAI-KTFENKY 175 (338)
T ss_pred --------------------------ehhccccceeeecCccccCCeEEEecCCCc---eEEEEeecccchh-hccccce
Confidence 124578888888886666654 55667766 9999999988776 6777788
Q ss_pred CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CCcce
Q 005235 541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL---SSKPY 616 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~---~~~~~ 616 (707)
.++++.|..++..+++|. |+.|++||++.+....++.+|...|+.|..+|+|.++.+-+.|.++++||++. +.+++
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 899999999999999999 99999999999999999999999999999999999999999999999999975 34568
Q ss_pred EEeecCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 617 RVLKCHPK----DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 617 ~~l~~h~~----~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
+.+.+|.. ....++|+|++..+.+|+.|..+++||. .... .+..|.||.+. |.+++|||..++
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~------~~r~---~lyklpGh~gs----vn~~~Fhp~e~i 322 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT------TSRR---ILYKLPGHYGS----VNEVDFHPTEPI 322 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeec------cccc---EEEEcCCccee----EEEeeecCCCcE
Confidence 88887753 4567899999999999999999999954 3333 37889999998 999999999999
Q ss_pred EEEEeCCCcEEE
Q 005235 693 LFTAGADSVIRL 704 (707)
Q Consensus 693 L~s~g~Dg~Irl 704 (707)
|.+++.|.+|.+
T Consensus 323 ils~~sdk~i~l 334 (338)
T KOG0265|consen 323 ILSCSSDKTIYL 334 (338)
T ss_pred EEEeccCceeEe
Confidence 999999999987
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=250.79 Aligned_cols=269 Identities=20% Similarity=0.287 Sum_probs=218.6
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeE---EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRC---LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~---l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
|+.++.++|++|.|.+..||.+..... .+++.+ ..+|..+.||||. +++++++.+..+.+||+.+|+....
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~---- 306 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHL---- 306 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhh----
Confidence 556667999999999999999865433 455555 8899999999999 5899999999999999988754210
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--c
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--K 537 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~ 537 (707)
...+|...+.+++|.|||..|++|++|+ ++..||+...... .. -
T Consensus 307 -----------------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr---~i~~wdlDgn~~~--~W~gv 352 (519)
T KOG0293|consen 307 -----------------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDR---TIIMWDLDGNILG--NWEGV 352 (519)
T ss_pred -----------------------------cccCcCCCcceeEEccCCceeEecCCCC---cEEEecCCcchhh--ccccc
Confidence 1123567899999999999999999988 9999999876432 22 2
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
....|.+++..+||+++++.+ |..|++|+..+......+..+ .+|+++++|.+|.++++.-.+..+.+||+... +.+
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv 430 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLV 430 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hHH
Confidence 235689999999999988766 999999999877665555444 78999999999999999999999999999955 778
Q ss_pred EEeecCCCC--EEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-E
Q 005235 617 RVLKCHPKD--ITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-W 692 (707)
Q Consensus 617 ~~l~~h~~~--I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~ 692 (707)
..+.||... |..-+|-- +..++||||.|+.|+|||.. ++. ++.+|.||... |++|+|+|..+ .
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~------sgk---ll~~LsGHs~~----vNcVswNP~~p~m 497 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI------SGK---LLAVLSGHSKT----VNCVSWNPADPEM 497 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc------CCc---eeEeecCCcce----eeEEecCCCCHHH
Confidence 888888753 33445644 44799999999999999643 332 58999999988 99999999887 5
Q ss_pred EEEEeCCCcEEEEe
Q 005235 693 LFTAGADSVIRLYC 706 (707)
Q Consensus 693 L~s~g~Dg~IrlWd 706 (707)
+||||.||+||||-
T Consensus 498 ~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 498 FASASDDGTIRIWG 511 (519)
T ss_pred hhccCCCCeEEEec
Confidence 79999999999995
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-28 Score=271.21 Aligned_cols=241 Identities=17% Similarity=0.233 Sum_probs=213.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...|.+++|+|.. ..++++-.+|.|++||..-+.. ...+..|.++
T Consensus 9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl----------------------------------i~rFdeHdGp 53 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL----------------------------------IDRFDEHDGP 53 (1202)
T ss_pred cccccceecCCCC-CEEEEeecCceeeeehhhhhhH----------------------------------HhhhhccCCc
Confidence 5678999999998 4788899999999999765421 1125589999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|..|+|||.+..|++|+.|- .|+||+....++. .++ +|-.-|..+.||+.-++|++++ |.+||||+.++++++.
T Consensus 54 VRgv~FH~~qplFVSGGDDy---kIkVWnYk~rrcl-ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia 129 (1202)
T KOG0292|consen 54 VRGVDFHPTQPLFVSGGDDY---KIKVWNYKTRRCL-FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA 129 (1202)
T ss_pred cceeeecCCCCeEEecCCcc---EEEEEecccceeh-hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE
Confidence 99999999999999999988 9999999999998 777 9999999999999999999999 7999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC----------------------------cceEEeecCCCCE
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS----------------------------KPYRVLKCHPKDI 626 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~----------------------------~~~~~l~~h~~~I 626 (707)
.+.+|...|.|..|||..+.++++|-|.+|+|||+.--. .....+.+|...|
T Consensus 130 vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 130 VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 999999999999999999999999999999999985210 1234678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+-++|||.-++|+||++|..|++|.+. ... ...+.+.+||.+. |.++-|||.+..|+|.|.|++|||||
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmn------etK-aWEvDtcrgH~nn----Vssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMN------ETK-AWEVDTCRGHYNN----VSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEec------ccc-ceeehhhhcccCC----cceEEecCccceeEecCCCccEEEEe
Confidence 999999999999999999999999543 221 1246788999998 99999999999999999999999999
Q ss_pred C
Q 005235 707 H 707 (707)
Q Consensus 707 l 707 (707)
+
T Consensus 279 m 279 (1202)
T KOG0292|consen 279 M 279 (1202)
T ss_pred c
Confidence 6
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=6e-29 Score=253.87 Aligned_cols=259 Identities=15% Similarity=0.227 Sum_probs=223.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhccc-ccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRR-VKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~-~~~v~~~~ 465 (707)
..|++|+..|.+.+|+..+-..-..++. +++|.++.|++++ ..++++..+|.|++|++.-... .+..+ ...|.+++
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLA 187 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheec
Confidence 3799999999999999633221111122 8999999999999 4888999999999999876543 33444 47888888
Q ss_pred cc-----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc
Q 005235 466 TP-----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL 538 (707)
Q Consensus 466 ~~-----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~ 538 (707)
|+ +++++.|++|++|+...... .++.+|.-.|++++|||.-..+|+++.|. .|++||..++.+. .++ .|
T Consensus 188 fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn---lVKlWDprSg~cl-~tlh~H 263 (464)
T KOG0284|consen 188 FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN---LVKLWDPRSGSCL-ATLHGH 263 (464)
T ss_pred cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc---eeEeecCCCcchh-hhhhhc
Confidence 88 89999999999999875544 45789999999999999999999999988 9999999999998 888 99
Q ss_pred CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcce
Q 005235 539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
+..|..+.|+|++++|++++ |..+++||+++.+.+.++.+|...+++++|||-. .+|.+|+.||.|..|.+... .|+
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~ 342 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPL 342 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccc
Confidence 99999999999999999999 9999999999888899999999999999999965 67888999999999999854 444
Q ss_pred EEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 617 RVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 617 ~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
..+ .+|...|++++|||-|.+||+|+.|.++++|.-.
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 433 5899999999999999999999999999999543
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=246.77 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=235.7
Q ss_pred CCCCCCCccc-----cCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235 288 KPKLPGHEES-----YNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR 360 (707)
Q Consensus 288 k~~lpgh~~s-----ynP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~ 360 (707)
+..|.||..+ |.|..-..+++.+ |-.+ |.-.++...+.+.+|... ..|+.+..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~----------d~tikv~D~~tg~~e~~LrGHt~s-------v~di~~~a--- 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASE----------DATIKVFDTETGELERSLRGHTDS-------VFDISFDA--- 160 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecC----------CceEEEEEccchhhhhhhhccccc-------eeEEEEec---
Confidence 3467788764 8888777777654 4444 444455555555555544 47777663
Q ss_pred cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEe
Q 005235 361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV 438 (707)
Q Consensus 361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~ 438 (707)
.+.+++++|.|=.+++||..+ .+|++.+.+ ...|.+++|-|.|+ ++++++.
T Consensus 161 --------------------------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~sr 213 (406)
T KOG0295|consen 161 --------------------------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSR 213 (406)
T ss_pred --------------------------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeeccc
Confidence 345999999999999999886 566666655 78899999999995 8999999
Q ss_pred CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235 439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES 518 (707)
Q Consensus 439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~ 518 (707)
|.+|+.|++.++-. ...+.+|...|..+..+.||..+|+++.|.
T Consensus 214 D~tik~We~~tg~c----------------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dq-- 257 (406)
T KOG0295|consen 214 DNTIKAWECDTGYC----------------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQ-- 257 (406)
T ss_pred ccceeEEeccccee----------------------------------EEeccCchHhEEEEEecCCeeEEEecCCCc--
Confidence 99999999887632 124668999999999999999999999988
Q ss_pred cEEEEEECCCCceeeeee-ccCCCeEEEEEeCC---------------CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCC
Q 005235 519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT---------------RSIFFVST-KKNIRVYDLLKQRLIKKLETGLK 581 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd---------------~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~ 581 (707)
+|++|-+.+.++. ..+ .|..+|.|++|.|. ++++++++ |++|++||+.++.++.+|.+|..
T Consensus 258 -tl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 258 -TLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred -eEEEEEeccchhh-hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 9999999999887 788 99999999999773 25788888 99999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
||..++|+|.|+||+++..|++|++||+.+. ++.+++..|..-|+++.|+.+.++++||+-|.++++|.
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999987 88999999999999999999999999999999999993
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.9e-28 Score=253.89 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=229.9
Q ss_pred CCCCCCCcc-----ccCC-CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235 288 KPKLPGHEE-----SYNP-SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR 358 (707)
Q Consensus 288 k~~lpgh~~-----synP-~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr 358 (707)
.+.++||.. -|.| .+.+|++.+ .+++|+. ...+.+||+..+|...| .++.|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v----------y~~~~~lrtf~gH~k~V-------rd~~~s-- 267 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV----------YDDRRCLRTFKGHRKPV-------RDASFN-- 267 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEE----------ecCcceehhhhcchhhh-------hhhhcc--
Confidence 357889976 3777 788888854 4455552 23466788888887776 455555
Q ss_pred cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe
Q 005235 359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV 438 (707)
Q Consensus 359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~ 438 (707)
..+..++|+|.|+.|++||++||+|+..+..+..+.|+.|+|++...+++++.
T Consensus 268 ---------------------------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s 320 (503)
T KOG0282|consen 268 ---------------------------NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS 320 (503)
T ss_pred ---------------------------ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecC
Confidence 44568999999999999999999999999999999999999999778889999
Q ss_pred CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235 439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES 518 (707)
Q Consensus 439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~ 518 (707)
++.|+.||+.++... .....|-+.|..+.|-++|.+|++.+.|+
T Consensus 321 d~ki~~wDiRs~kvv----------------------------------qeYd~hLg~i~~i~F~~~g~rFissSDdk-- 364 (503)
T KOG0282|consen 321 DKKIRQWDIRSGKVV----------------------------------QEYDRHLGAILDITFVDEGRRFISSSDDK-- 364 (503)
T ss_pred CCcEEEEeccchHHH----------------------------------HHHHhhhhheeeeEEccCCceEeeeccCc--
Confidence 999999998877421 12336889999999999999999999998
Q ss_pred cEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC---eEEEEEeCCC--CCeEEEEEcCC
Q 005235 519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ---RLIKKLETGL--KEVSSIAIHPA 591 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~--~~I~sl~~spd 591 (707)
+++||+....-...... .......|+..+|+++++++-+ |+.|.+|.+... ...+.+.+|. +.-..+.||||
T Consensus 365 -s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 365 -SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred -cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999998876552222 4455677999999999999988 999999986532 2334566664 34677899999
Q ss_pred CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235 592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFH 651 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd 651 (707)
|.+|++|+.||.+.+||..+. +.+..+++|..++..+.|||..+ .+|+|+.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999987 88999999999999999999765 899999999999994
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=250.63 Aligned_cols=278 Identities=17% Similarity=0.255 Sum_probs=220.1
Q ss_pred CCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
.|..|.. .||+.|+||||++. .-.|...+. ..+....+.- +|...+..+.|+|+.+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d--------~~~kl~~tlv-------gh~~~V~yi~wSPDdr- 282 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD--------VHFKLKKTLV-------GHSQPVSYIMWSPDDR- 282 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC--------cceeeeeeee-------cccCceEEEEECCCCC-
Confidence 4556665 69999999999665 222332110 1233333443 4444558889998875
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeC
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVG 439 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d 439 (707)
++++++.|..+++||+.||.+.+.+.. ...+.+++|+||| ..+++++.|
T Consensus 283 ----------------------------yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~d 333 (519)
T KOG0293|consen 283 ----------------------------YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPD 333 (519)
T ss_pred ----------------------------eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCC
Confidence 888889999999999999999998887 4889999999999 589999999
Q ss_pred CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235 440 QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR 519 (707)
Q Consensus 440 ~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~ 519 (707)
+++..|++.... +..|.- .....|.+++.++||+++++++.|.
T Consensus 334 r~i~~wdlDgn~-------------------------~~~W~g---------vr~~~v~dlait~Dgk~vl~v~~d~--- 376 (519)
T KOG0293|consen 334 RTIIMWDLDGNI-------------------------LGNWEG---------VRDPKVHDLAITYDGKYVLLVTVDK--- 376 (519)
T ss_pred CcEEEecCCcch-------------------------hhcccc---------cccceeEEEEEcCCCcEEEEEeccc---
Confidence 999999975431 122311 1124688999999999999999888
Q ss_pred EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC--eEEEEEc-CCCCEE
Q 005235 520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE--VSSIAIH-PAGDNL 595 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~s-pdg~~L 595 (707)
.|++++..+.... ..+....+|++++.+.+++++++.- +..|++||+...+++.++.+|... |-.-+|. -+..++
T Consensus 377 ~i~l~~~e~~~dr-~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 377 KIRLYNREARVDR-GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred ceeeechhhhhhh-ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 9999998877654 3346778999999999999988876 899999999999999999988755 2222343 234799
Q ss_pred EEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235 596 IVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFH 651 (707)
Q Consensus 596 ~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd 651 (707)
++||.|+.|+||+..++ +++.++.||...|++|+|+|..+ +|||||+||+|+||-
T Consensus 456 aSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999999999999987 89999999999999999999776 899999999999993
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=230.88 Aligned_cols=262 Identities=19% Similarity=0.258 Sum_probs=216.6
Q ss_pred eCCCcEEEEeCCCCeEEE---EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235 395 STDGTVRIWEVESGRCLR---VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD 471 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~---~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~ 471 (707)
...|++.|-++..+.-+. .+...+.+..|+|+++.+..+++++.||+++|||+.-..
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------------------- 94 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------------------- 94 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------
Confidence 457889999986554444 444489999999999988889999999999999954321
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP 549 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp 549 (707)
+.| .....|...|.++.|++ .+..+++++-|+ +|++|+.....+. .+| +|...|..++|+|
T Consensus 95 ---~Pi----------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~---TiKLW~~~r~~Sv-~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 95 ---KPI----------HKFKEHKREVYSVDWNTVRRRIFLTSSWDG---TIKLWDPNRPNSV-QTFNGHNSCIYQAAFSP 157 (311)
T ss_pred ---cch----------hHHHhhhhheEEeccccccceeEEeeccCC---ceEeecCCCCcce-EeecCCccEEEEEecCC
Confidence 111 23457999999999998 556788889998 9999999999998 899 9999999999999
Q ss_pred CC-CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 550 TR-SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 550 d~-~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
.- .+|++++ |+++++||++. |+.+ .+..|...|.|+.|+.- ...|++|+.|+.|+.||++.-..|+..+.+|.-+
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 64 5566666 99999999986 4444 48899889999999864 4678999999999999999988999999999999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEE
Q 005235 626 ITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIR 703 (707)
Q Consensus 626 I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~Ir 703 (707)
|+.|.|||.. .+|||||.|-+++||+... ... .+.+..-|+.. |..+.|++. ..++|++|.|+.+.
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~-----~ds---~~e~~~~HtEF----v~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPER-----QDS---AIETVDHHTEF----VCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEeccccc-----chh---hhhhhhccceE----EeccccccccCceeeeccccccee
Confidence 9999999965 4999999999999995432 222 25566678887 999999985 45899999999999
Q ss_pred EEe
Q 005235 704 LYC 706 (707)
Q Consensus 704 lWd 706 (707)
||+
T Consensus 305 Vw~ 307 (311)
T KOG0277|consen 305 VWN 307 (311)
T ss_pred eec
Confidence 997
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.7e-27 Score=261.00 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=208.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...|.++.|+++|. .+++++.++.+++|++..... .....+.+|...
T Consensus 159 ~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~--------------------------------~~~~~l~~h~~~ 205 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKS--------------------------------NLLRELSGHTRG 205 (456)
T ss_pred cCceEEEEEcCCCC-eEEEccCCCcEEEeecccccc--------------------------------hhhccccccccc
Confidence 57899999999995 588888999999999744321 011123589999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI 573 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~ 573 (707)
|.+++|+|+|.++++++.|+ +|+|||+.. +... ..+ +|...|++++|+|+++++++|+ |++|+|||+.+++++
T Consensus 206 v~~~~fs~d~~~l~s~s~D~---tiriwd~~~~~~~~-~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDK---TLRIWDLKDDGRNL-KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred eeeeEECCCCcEEEEecCCc---eEEEeeccCCCeEE-EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence 99999999999999999998 999999944 4565 788 9999999999999999999988 999999999999999
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEeecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVLKCHPKD--ITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l~~h~~~--I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.++.+|...|++++|+++|.+|++++.|+.|++||+.++.. +.+.+..+... +++++|+|++.+|++++.|+++++|
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999999998743 46777777665 9999999999999999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++ ..... +..+.+|... ...+.+...++.+.++++|+.|+.|.+|++
T Consensus 362 ~l------~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 362 DL------RSGKS---VGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred Ec------cCCcc---eeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 54 43333 6778888763 123566667889999999999999999985
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.6e-26 Score=273.35 Aligned_cols=270 Identities=13% Similarity=0.181 Sum_probs=218.3
Q ss_pred CCcEEEEeCCCCeEEEEEe------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccc
Q 005235 397 DGTVRIWEVESGRCLRVLE------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAP 470 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~ 470 (707)
+|.+++|+..+.+....+. +.+.|.+++|+|+++ .+++++.|+.|+||++........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~--------------- 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR--------------- 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc---------------
Confidence 6778899888766554443 267899999999994 788889999999999754210000
Q ss_pred cCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235 471 DDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH 548 (707)
Q Consensus 471 ~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs 548 (707)
+. ........+...|.+++|++ .+.+|++++.|+ .|+|||+.++... ..+ .|.+.|.+++|+
T Consensus 521 ---~~---------~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg---~v~lWd~~~~~~~-~~~~~H~~~V~~l~~~ 584 (793)
T PLN00181 521 ---DI---------HYPVVELASRSKLSGICWNSYIKSQVASSNFEG---VVQVWDVARSQLV-TEMKEHEKRVWSIDYS 584 (793)
T ss_pred ---cc---------ccceEEecccCceeeEEeccCCCCEEEEEeCCC---eEEEEECCCCeEE-EEecCCCCCEEEEEEc
Confidence 00 00001223456799999987 478999999998 9999999988777 777 899999999999
Q ss_pred C-CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 549 P-TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 549 p-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
| ++.+|++|+ |++|++||+.++..+..+..+ ..|.++.|+ ++|.+|++|+.||.|++||++....++..+.+|...
T Consensus 585 p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 7 678899888 999999999999888888765 679999995 579999999999999999998765577888999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|.+++|+ ++.+|++++.|++|+|||+.... ......++..+.+|... +..++|+|++.+|++|+.||+|++|
T Consensus 664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~---~~~~~~~l~~~~gh~~~----i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI---SGINETPLHSFMGHTNV----KNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred EEEEEEe-CCCEEEEEECCCEEEEEeCCCCc---cccCCcceEEEcCCCCC----eeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 9999997 67899999999999999764321 11122357889999887 9999999999999999999999999
Q ss_pred eC
Q 005235 706 CH 707 (707)
Q Consensus 706 dl 707 (707)
+.
T Consensus 736 ~~ 737 (793)
T PLN00181 736 HK 737 (793)
T ss_pred EC
Confidence 73
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-27 Score=251.60 Aligned_cols=237 Identities=20% Similarity=0.255 Sum_probs=210.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...|.+|.|+|.. ..++++-.+|.|.|||.++... ++ .+.-..-+
T Consensus 13 SdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtm------------------------Vk----------sfeV~~~P 57 (794)
T KOG0276|consen 13 SDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTM------------------------VK----------SFEVSEVP 57 (794)
T ss_pred CCceeeeecCCCC-ceEEEeeecCeeEEEeccccee------------------------ee----------eeeecccc
Confidence 6789999999998 4788889999999999766411 11 12234568
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLI 573 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~ 573 (707)
|.+..|-+.-+++++|+.|. .|+||+..+.... ..| .|..-|.+++.||..+++++++ |-+|++||.... .+.
T Consensus 58 vRa~kfiaRknWiv~GsDD~---~IrVfnynt~ekV-~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~ 133 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDM---QIRVFNYNTGEKV-KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE 133 (794)
T ss_pred hhhheeeeccceEEEecCCc---eEEEEecccceee-EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence 88899999999999999999 9999999999998 999 9999999999999999999999 799999999875 788
Q ss_pred EEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 005235 574 KKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY--PLFASCSDDCTAYVF 650 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg--~llaSgs~Dg~I~Vw 650 (707)
+++.+|...|.+++|.|. .+.+|++|-|++|+||.+... .|..+|.+|...|++|.|-+.| ++|+||++|.+|+||
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 999999999999999995 478999999999999999876 8899999999999999998754 799999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
| ..+.. |+.+|.||+.. |..+.|||.-++|+|||.||++|||+
T Consensus 213 D------yQtk~---CV~TLeGHt~N----vs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 213 D------YQTKS---CVQTLEGHTNN----VSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred e------cchHH---HHHHhhccccc----ceEEEecCCCcEEEEecCCccEEEec
Confidence 5 43443 58999999998 99999999999999999999999996
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=4.4e-26 Score=233.93 Aligned_cols=222 Identities=24% Similarity=0.364 Sum_probs=192.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
..+++++.||.|++|++.+++.+..+.. ...|.++.|++++ .+++++. ++.|.+|++.++..
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-------------- 127 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKC-------------- 127 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEE--------------
Confidence 4899999999999999999888877776 5689999999997 4555555 99999999764311
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
...+..|...|.+++|++++.++++++.++ .|.+||+...... ..+ .+...+.++
T Consensus 128 --------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~~-~~~~~~~~~i~~~ 183 (289)
T cd00200 128 --------------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDG---TIKLWDLRTGKCV-ATLTGHTGEVNSV 183 (289)
T ss_pred --------------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCC---cEEEEEccccccc-eeEecCccccceE
Confidence 112336788999999999999999888777 9999999987776 667 777899999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
+|+|++..+++++ ++.|++||+.+++.+..+..+...+.+++|+|++.++++++.+|.|++||+.++ .+...+..|..
T Consensus 184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~ 262 (289)
T cd00200 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTN 262 (289)
T ss_pred EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCC
Confidence 9999998888887 999999999999888888788889999999999989998888999999999876 67888889999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
.|.+++|+|++++|++++.||.|++|+
T Consensus 263 ~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999993
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=4.5e-27 Score=236.38 Aligned_cols=235 Identities=20% Similarity=0.244 Sum_probs=211.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.||++.|.. ..+++++.|++|.|||+.++.. ...+.+|-..
T Consensus 151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L----------------------------------kltltGhi~~ 195 (460)
T KOG0285|consen 151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL----------------------------------KLTLTGHIET 195 (460)
T ss_pred cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE----------------------------------EEeecchhhe
Confidence 6899999999987 4788888999999999877622 1236689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|..|++|+...|+++++.|+ .|+.||+...+.+ +.+ +|-..|.|++.||.-..|++|+ |.++||||+++...+.
T Consensus 196 vr~vavS~rHpYlFs~gedk---~VKCwDLe~nkvI-R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 196 VRGVAVSKRHPYLFSAGEDK---QVKCWDLEYNKVI-RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeeecccCceEEEecCCC---eeEEEechhhhhH-HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 99999999999999999988 9999999999888 777 9999999999999999999998 9999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
.+.+|..+|.++.+.|-...+++||.|++|++||+..+ +...++..|...|++++.||....|||+|.|. |+-|
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w---- 345 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQW---- 345 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceec----
Confidence 99999999999999999999999999999999999987 77888999999999999999999999999886 8899
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++..+.. +..+.+|... |++++...|+ ++++|+..|.|.+||
T Consensus 346 --~~p~g~f---~~nlsgh~~i----intl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 346 --KLPEGEF---LQNLSGHNAI----INTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --cCCccch---hhccccccce----eeeeeeccCc-eEEEcCCceEEEEEe
Confidence 5555544 6678999987 9999988775 789999999999997
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.6e-28 Score=241.86 Aligned_cols=265 Identities=19% Similarity=0.239 Sum_probs=216.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.|...+.+++||.||.|+|||+.+..|+++++. .+.|..|++... .+++++.|.+|+.|.+....
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~~p----------- 140 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDGPP----------- 140 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc---ceEEecCCcceeeeeccCCc-----------
Confidence 344446899999999999999999999999998 789999999883 59999999999999865420
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
.......+.+..+.-+..++.|||++. .|.|||....... ..+ -....
T Consensus 141 -------------------------~~tilg~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~Pv-~smswG~Dt 189 (433)
T KOG0268|consen 141 -------------------------LHTILGKSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDNPV-SSMSWGADS 189 (433)
T ss_pred -------------------------ceeeeccccccccccccccccccccCc-----eeeecccccCCcc-ceeecCCCc
Confidence 011223456667777778889999987 8999999887776 667 55678
Q ss_pred eEEEEEeCCCCEEE-EE-eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 542 PVSSVFHPTRSIFF-VS-TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 542 V~~v~fspd~~~l~-v~-sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
|.++.|+|....++ +| +|+.|.|||++++.+++++... ..-+.|+|+|.+-.+++|+.|..++.||++....|+...
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 99999999776554 44 3999999999999888877654 345789999999999999999999999999888999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
.+|.++|.+|.|||.|+-|+|||.|.+|+||.+.... +.. .-|+. ..+.|.++.||.|.++|+|||.|
T Consensus 269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~---SRd--------iYhtk-RMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH---SRD--------IYHTK-RMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred cccceeEEEeccCCCcchhccccccceEEEeecCCCc---chh--------hhhHh-hhheeeEEEEeccccEEEecCCC
Confidence 9999999999999999999999999999999654211 110 01221 12339999999999999999999
Q ss_pred CcEEEEe
Q 005235 700 SVIRLYC 706 (707)
Q Consensus 700 g~IrlWd 706 (707)
+.||||.
T Consensus 337 ~nvRlWk 343 (433)
T KOG0268|consen 337 GNVRLWK 343 (433)
T ss_pred cceeeee
Confidence 9999995
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=243.05 Aligned_cols=279 Identities=19% Similarity=0.228 Sum_probs=211.5
Q ss_pred CcEEEEEeCCCcEEEEeCCC----CeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 388 CYLEYKGSTDGTVRIWEVES----GRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~t----g~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
+..+++||.|.+|++||... .+..+.+.- ...|++++|++.|+ .||+++.....+|+|-......-
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e------- 250 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVE------- 250 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeee-------
Confidence 35899999999999999863 223333333 67899999999995 78888888899998843321100
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeeecc--
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL-- 538 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~-- 538 (707)
...|--.|-+ .....+|...++|.+|||.. ..|+|++.|| +++||++.....+...|++
T Consensus 251 ----------~~KGDQYI~D-----m~nTKGHia~lt~g~whP~~k~~FlT~s~Dg---tlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 251 ----------FSKGDQYIRD-----MYNTKGHIAELTCGCWHPDNKEEFLTCSYDG---TLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ----------eeccchhhhh-----hhccCCceeeeeccccccCcccceEEecCCC---cEEEEecCCchhheeEEeecc
Confidence 0001101111 11256899999999999965 5799999999 9999999988877444422
Q ss_pred ----CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--E-EEEEeCCCC--CeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 539 ----HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--L-IKKLETGLK--EVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 539 ----~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~-~~~l~~~~~--~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
.-.++.++|+|++++|++|. ||.|.+|+..... + .+.-..|.. .|+||+||++|++|++-+.|+++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 34788999999999999988 9999999986531 1 222335554 799999999999999999999999999
Q ss_pred CCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeC------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 609 MDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSD------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 609 l~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
++...+++.+..+-. .+-+.++|||+.++|++|+. .|++.+|+.+++. . +..+.-.+..
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------~---v~ki~i~~aS---- 459 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------T---VYKIDISTAS---- 459 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------e---EEEecCCCce----
Confidence 998888887766543 34678999999999999863 4789999766443 2 4555444555
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 681 VMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|..+.|||.-+.|+.++.||++++|
T Consensus 460 vv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 460 VVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEEeecchhhheeeecCCCceEEE
Confidence 9999999999999999999999986
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=219.06 Aligned_cols=267 Identities=16% Similarity=0.179 Sum_probs=222.4
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
-|..++++.++++.|.+|++|+...|.+++++.+ ...|..++.+.|. ..+++++.|..|.+||+.+|..
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv--------- 93 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKV--------- 93 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCee---------
Confidence 3677889999999999999999999999999998 7889999999988 4799999999999999888632
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH 539 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~ 539 (707)
...+.+|.+.|+.+.|+.+...+++|+-|. ++++||.+...... +.| ...
T Consensus 94 -------------------------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 94 -------------------------DRRFRGHLAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred -------------------------eeecccccceeeEEEecCcceEEEeccccc---eeEEEEcccCCCCccchhhhhc
Confidence 123568999999999999999999999988 99999998776532 334 677
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~ 618 (707)
..|.++... +..|++|+ ||++|.||++.|++.....+| +|+|+.|+++|+.+++++.|++|++.|-.++ ++++.
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~s 220 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKS 220 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchh-HHHHH
Confidence 888888876 55677777 999999999999988777655 7999999999999999999999999999988 88899
Q ss_pred eecCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 619 LKCHPKDI--TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 619 l~~h~~~I--~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
+++|...- ..++++.....+++||+||.|++| ||..... +..+..|... -|.++++||.-.-|+++
T Consensus 221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w------dLvd~~~---~sk~~~~~~v---~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW------DLVDETQ---ISKLSVVSTV---IVTDLSCHPTMDDFITA 288 (307)
T ss_pred hcccccceeeeeeeecccceeEEeccCCceEEEE------Eecccee---eeeeccCCce---eEEeeecccCccceeEe
Confidence 99997643 355677788899999999999999 5555544 4455555432 27999999999988888
Q ss_pred eCCCcEEEE
Q 005235 697 GADSVIRLY 705 (707)
Q Consensus 697 g~Dg~IrlW 705 (707)
+.. .+.+|
T Consensus 289 ~~~-~~~~~ 296 (307)
T KOG0316|consen 289 TGH-GDLFW 296 (307)
T ss_pred cCC-ceece
Confidence 744 44444
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=218.47 Aligned_cols=267 Identities=15% Similarity=0.227 Sum_probs=220.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.++..+++|+.|+++.||++..++.+..+.. .+.|-.++|+|.....+++++.|.+|++||...+.+.
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------- 100 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------- 100 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE---------
Confidence 3446899999999999999998876665544 6789999999987667888999999999998776432
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP 542 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V 542 (707)
..+...+.-..++|+|+|.+++++..|. .|.+.|.++.+.. ......-.+
T Consensus 101 --------------------------~~i~~~~eni~i~wsp~g~~~~~~~kdD---~it~id~r~~~~~-~~~~~~~e~ 150 (313)
T KOG1407|consen 101 --------------------------ARIETKGENINITWSPDGEYIAVGNKDD---RITFIDARTYKIV-NEEQFKFEV 150 (313)
T ss_pred --------------------------EEeeccCcceEEEEcCCCCEEEEecCcc---cEEEEEeccccee-ehhccccee
Confidence 1223344556789999999999999988 9999999988776 555667778
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
.-++|+-++.+|+..+ -|+|.|.....-+++.+++.|.....||.|+|+|++||+|+.|..+.+||++.. .+.+.+..
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isR 229 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISR 229 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecc
Confidence 8899998777777766 599999999999999999999999999999999999999999999999999866 78888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC--
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-- 699 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-- 699 (707)
+.-+|+.+.||.+|++||+||.|-.|-|=++. ++.. +..+. +.++ ...|+|||..++||.++.|
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve------tGd~---~~eI~-~~~~----t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVE------TGDR---VWEIP-CEGP----TFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecc------cCCe---EEEee-ccCC----ceeEEecCCCceeeEEecCCC
Confidence 99999999999999999999999999887443 3332 33333 3333 7899999999999888765
Q ss_pred -------CcEEEEe
Q 005235 700 -------SVIRLYC 706 (707)
Q Consensus 700 -------g~IrlWd 706 (707)
|+|++|-
T Consensus 296 ~d~~reag~vKiFG 309 (313)
T KOG1407|consen 296 GDSNREAGTVKIFG 309 (313)
T ss_pred CccccccceeEEec
Confidence 5777763
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.3e-25 Score=242.09 Aligned_cols=299 Identities=15% Similarity=0.169 Sum_probs=213.2
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc------------
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE------------ 452 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------------ 452 (707)
....++++.|.|+.|++||+.+..|..+.-. .+.|+++++.++ .+++++.++.+.+|++.....
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~---~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~ 235 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK---LLVTAGTDSELKVWELAFEDDEKETNRYISTKL 235 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc---eEEEEecCCceEEEEeecccccccccccceeec
Confidence 3456999999999999999999999987766 899999999994 599999999999999822100
Q ss_pred --------------hhcccccceeeec--------c----------------------------------c---------
Q 005235 453 --------------EEQRRVKDLLHVE--------T----------------------------------P--------- 467 (707)
Q Consensus 453 --------------~~~~~~~~v~~~~--------~----------------------------------~--------- 467 (707)
.....++.++.+. | +
T Consensus 236 ~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~ 315 (888)
T KOG0306|consen 236 RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLE 315 (888)
T ss_pred cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHH
Confidence 0000111111000 0 0
Q ss_pred ------------cccc---------CCCCcEEEEecCC-ccc---------eEEeccCCCeEEEEEcCCCCEEEEEe---
Q 005235 468 ------------TAPD---------DNMASIVSWLQHD-KLD---------GIRLRHFKMVSSVEWHRRGDYLSTVM--- 513 (707)
Q Consensus 468 ------------~~~~---------~~d~~i~iW~~~~-~~~---------~~~~~h~~~V~~v~~sp~g~~lat~s--- 513 (707)
+..+ -.+.++..+.++. ... ....+|...|.++++|.+...+++++
T Consensus 316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~S 395 (888)
T KOG0306|consen 316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGES 395 (888)
T ss_pred heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCc
Confidence 0000 0112222222221 000 11345555555555555555555444
Q ss_pred ------------------------------------CCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEE
Q 005235 514 ------------------------------------PAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 514 ------------------------------------~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v 556 (707)
..| .+.++|+...... ... .|.+.+.+++.+|++..+++
T Consensus 396 ikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~G---el~vfdlaS~~l~-Eti~AHdgaIWsi~~~pD~~g~vT 471 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNG---ELQVFDLASASLV-ETIRAHDGAIWSISLSPDNKGFVT 471 (888)
T ss_pred EEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCC---ceEEEEeehhhhh-hhhhccccceeeeeecCCCCceEE
Confidence 333 4444444444333 333 67889999999999999999
Q ss_pred Ee-CCeEEEEECCC-----CeEE--------EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 557 ST-KKNIRVYDLLK-----QRLI--------KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 557 ~s-dg~I~iwDl~~-----~~~~--------~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
|+ |.+|++||..- +... +++. -...|.|+.+||||.+|++|--|.+|.||-+++- +.+-.|-||
T Consensus 472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGH 549 (888)
T KOG0306|consen 472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGH 549 (888)
T ss_pred ecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeeccc
Confidence 98 99999999641 1111 2222 2356999999999999999999999999999987 788889999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
.-+|.|+..|||+.+++|||.|.+|+||=+ .=+ .|-+.+.+|... |.++.|.|....++|+|.|+.|
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGL------dFG---DCHKS~fAHdDS----vm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGL------DFG---DCHKSFFAHDDS----VMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEecc------ccc---hhhhhhhcccCc----eeEEEEcccceeEEEecCcceE
Confidence 999999999999999999999999999933 222 247889999998 9999999999999999999999
Q ss_pred EEEe
Q 005235 703 RLYC 706 (707)
Q Consensus 703 rlWd 706 (707)
+-||
T Consensus 617 KqWD 620 (888)
T KOG0306|consen 617 KQWD 620 (888)
T ss_pred Eeec
Confidence 9996
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.2e-26 Score=251.76 Aligned_cols=265 Identities=15% Similarity=0.230 Sum_probs=222.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
-.++++-..|+|++||..-|.++..|.. .++|..|+|+|++. .+++++.|-.|++|+..+...
T Consensus 22 PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc--------------- 85 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC--------------- 85 (1202)
T ss_pred CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccccee---------------
Confidence 3788888999999999999999988876 99999999999994 677777778899998765422
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+.+|-..|..+.||+.-.+++++|.|. +|+||++.++.+. ..+ +|..-|+|..
T Consensus 86 -------------------lftL~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~i-avltGHnHYVMcAq 142 (1202)
T KOG0292|consen 86 -------------------LFTLLGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCI-AVLTGHNHYVMCAQ 142 (1202)
T ss_pred -------------------hhhhccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceE-EEEecCceEEEeec
Confidence 124679999999999999999999999988 9999999999998 888 9999999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCC--------C--------------------e-EEEEEeCCCCCeEEEEEcCCCCEEE
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLK--------Q--------------------R-LIKKLETGLKEVSSIAIHPAGDNLI 596 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~--------~--------------------~-~~~~l~~~~~~I~sl~~spdg~~L~ 596 (707)
|||...++++|+ |.+|||||+.. + . ....+.+|...|+-++|||.-.+|+
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV 222 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV 222 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE
Confidence 999999999999 99999999842 1 0 1235678999999999999999999
Q ss_pred EEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 597 VGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 597 sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
+|+.|+.|++|.+.... =.+.++++|...|.++-|||...+++|.|.|++|+|||+ .... ++++++-...
T Consensus 223 SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm------~kRt---~v~tfrrend 293 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM------TKRT---SVQTFRREND 293 (1202)
T ss_pred ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec------cccc---ceeeeeccCC
Confidence 99999999999997541 134578899999999999999999999999999999954 3333 3777876555
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
. .+.++-||....++.|- |+-+.+|.
T Consensus 294 R----FW~laahP~lNLfAAgH-DsGm~VFk 319 (1202)
T KOG0292|consen 294 R----FWILAAHPELNLFAAGH-DSGMIVFK 319 (1202)
T ss_pred e----EEEEEecCCcceeeeec-CCceEEEE
Confidence 5 89999999988665554 55555553
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.8e-26 Score=220.00 Aligned_cols=205 Identities=21% Similarity=0.267 Sum_probs=181.6
Q ss_pred EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCcee-e-eee--ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 489 IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSH-R-IPF--KLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~-~-~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.+.+|.+.+..++|||. |..||+++.|. .|+||+...+... . ..+ .|+..|.+++|+|.|++|++|+ |.++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46689999999999998 99999999987 9999999853221 1 334 7899999999999999999999 9999
Q ss_pred EEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--cceEEeecCCCCEEEEEEcCCCCEE
Q 005235 563 RVYDLLKQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 563 ~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~ll 638 (707)
.||.-..+ +++.+|.+|.+.|.|++|+++|.+||++|.|+.|-||.++... .+...|+.|+..|..|.|||...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986543 7899999999999999999999999999999999999998442 5678899999999999999999999
Q ss_pred EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+|+|.|.+|++|.-. ......++.+|.+|... |.+++|+|.|..|++++.|++|+||-
T Consensus 166 ~S~SYDnTIk~~~~~------~dddW~c~~tl~g~~~T----VW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDE------DDDDWECVQTLDGHENT----VWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EEeccCCeEEEEeec------CCCCeeEEEEecCccce----EEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999532 24445679999999987 99999999999999999999999996
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-25 Score=219.14 Aligned_cols=284 Identities=18% Similarity=0.217 Sum_probs=226.8
Q ss_pred CCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235 289 PKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 289 ~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
+.|.||+. .||-+|.+|++.+. |... |...+++.|.+..+|...| .|+|+-+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaK----------D~~~~vw~s~nGerlGty~GHtGav-----W~~Did~~----- 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAK----------DSTPTVWYSLNGERLGTYDGHTGAV-----WCCDIDWD----- 63 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecC----------CCCceEEEecCCceeeeecCCCceE-----EEEEecCC-----
Confidence 46788987 49999999999776 5444 6666788899998888886 56554433
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC--
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-- 439 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-- 439 (707)
...+++||.|.+++|||+.+|+++.+++...+|..+.|+++| .++.++.|
T Consensus 64 --------------------------s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g--n~~l~~tD~~ 115 (327)
T KOG0643|consen 64 --------------------------SKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG--NLILASTDKQ 115 (327)
T ss_pred --------------------------cceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC--cEEEEEehhh
Confidence 248999999999999999999999999999999999999999 45555544
Q ss_pred ----CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc-ceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235 440 ----QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL-DGIRLRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 440 ----~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~-~~~~~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
+.|.++++........ ... ...+..+.+.++.+.|.|.+.+|++|..
T Consensus 116 mg~~~~v~~fdi~~~~~~~~----------------------------s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDID----------------------------SEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred cCcceEEEEEEccCChhhhc----------------------------ccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 4577777654322110 111 1234567789999999999999999999
Q ss_pred CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235 515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg 592 (707)
+| .|.+||+.++......- .|...|+.++|+++..+|++++ |.+-++||..+-.+++++... .+|++.+++|-.
T Consensus 168 ~G---~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP~~ 243 (327)
T KOG0643|consen 168 DG---SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISPLL 243 (327)
T ss_pred CC---cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccccc
Confidence 99 99999999987663444 7888999999999999999999 999999999999999999865 789999999999
Q ss_pred CEEEEEECCCcE--------------EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 593 DNLIVGSREGKL--------------CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 593 ~~L~sGs~Dg~I--------------~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
++++.|+.-... ++|++-.. ..+..+++|-++|++|+|||+|+..+||+.||.|+|.++.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e-EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE-EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHH-HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 888887542211 22222211 3456788999999999999999999999999999998653
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.9e-27 Score=236.62 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=210.8
Q ss_pred CCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCC
Q 005235 321 DRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDG 398 (707)
Q Consensus 321 dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~Dg 398 (707)
|+.+ |.-+...+++.+-++...+ |.|.++-| ++++||.|.
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSV-------LCLqyd~r-------------------------------viisGSSDs 257 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSV-------LCLQYDER-------------------------------VIVSGSSDS 257 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcE-------Eeeeccce-------------------------------EEEecCCCc
Confidence 5555 5566777888887777765 65666633 799999999
Q ss_pred cEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235 399 TVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI 477 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i 477 (707)
||+|||++||+++.++-+ .+.|..+.|+.. .+++++.|.++.+|++.......
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it----------------------- 311 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDIT----------------------- 311 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHH-----------------------
Confidence 999999999999998877 899999999865 59999999999999987653210
Q ss_pred EEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEE
Q 005235 478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v 556 (707)
...++.+|...|+.|.|+ .+|+++++.|. +|++|++.+.... +++ +|+..|.|+.+. ++++++
T Consensus 312 --------~rrVLvGHrAaVNvVdfd--~kyIVsASgDR---TikvW~~st~efv-Rtl~gHkRGIAClQYr--~rlvVS 375 (499)
T KOG0281|consen 312 --------LRRVLVGHRAAVNVVDFD--DKYIVSASGDR---TIKVWSTSTCEFV-RTLNGHKRGIACLQYR--DRLVVS 375 (499)
T ss_pred --------HHHHHhhhhhheeeeccc--cceEEEecCCc---eEEEEeccceeee-hhhhcccccceehhcc--CeEEEe
Confidence 112367999999999996 45999999877 9999999999998 888 999999988875 778888
Q ss_pred Ee-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--------ceEEeecCCCCEE
Q 005235 557 ST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--------PYRVLKCHPKDIT 627 (707)
Q Consensus 557 ~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--------~~~~l~~h~~~I~ 627 (707)
|+ |.+||+||+..|.+++.+++|..-|.|+.|. ...+++|.+||+|+|||+..+.. ++.++..|++.|.
T Consensus 376 GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred cCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 87 9999999999999999999999999999995 67999999999999999987543 3556778999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
.+.| |...+++++.|.+|.|||+..
T Consensus 454 rLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 454 RLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred EEee--cceEEEeccCCCeEEEEEcCC
Confidence 9999 567899999999999997653
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.4e-26 Score=221.56 Aligned_cols=265 Identities=17% Similarity=0.241 Sum_probs=225.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
..+.+|++++.||.-.+-+-.||.-+.+|.+ .+.|++.+++.+. ..-++++.|-+-++||.-++...
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdel----------- 94 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDEL----------- 94 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhh-----------
Confidence 4567899999999999999999999999998 8999999999887 35566677888889987776442
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
....|...|.+++|+.+.++|++|+.+. .++|+|++........+ +|.+.|.
T Consensus 95 ------------------------hsf~hkhivk~~af~~ds~~lltgg~ek---llrvfdln~p~App~E~~ghtg~Ir 147 (334)
T KOG0278|consen 95 ------------------------HSFEHKHIVKAVAFSQDSNYLLTGGQEK---LLRVFDLNRPKAPPKEISGHTGGIR 147 (334)
T ss_pred ------------------------hhhhhhheeeeEEecccchhhhccchHH---HhhhhhccCCCCCchhhcCCCCcce
Confidence 1347888999999999999999999877 99999999887765667 9999999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
.+.|....+.|++++ |++||+||.+++..+++|... ..|+++.++++|++|.++ +.+.|.+||..+- .+++.+. -
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k-~ 223 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYK-M 223 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeecc-C
Confidence 999988878888766 899999999999999999865 689999999999877665 5578999999866 5566554 3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
...|.+..++|+...|++|+.|+.++.||.. ++.. +.. .+||-++ |.++.|+|+|...++||.||+
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~------TgeE---i~~~nkgh~gp----VhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYN------TGEE---IGSYNKGHFGP----VHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEecc------CCce---eeecccCCCCc----eEEEEECCCCceeeccCCCce
Confidence 4669999999999999999999999999554 4433 233 4789888 999999999999999999999
Q ss_pred EEEEe
Q 005235 702 IRLYC 706 (707)
Q Consensus 702 IrlWd 706 (707)
||||.
T Consensus 291 irlWQ 295 (334)
T KOG0278|consen 291 IRLWQ 295 (334)
T ss_pred EEEEE
Confidence 99996
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.8e-27 Score=231.55 Aligned_cols=277 Identities=16% Similarity=0.229 Sum_probs=235.0
Q ss_pred CCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---------CCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI---------GEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
+..++.-|+++++++++||.||.|.||+..+|+..+.++. ..+|.|+.|+.|.+ .+++++.||.|++|.+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEE
Confidence 3445567899999999999999999999999987665543 78999999999985 6888889999999998
Q ss_pred CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
.+|.+.- ..-..|+..|+|+.|+.++..+++++.|. +++|+-+.
T Consensus 293 ~tG~ClR---------------------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~---tvRiHGlK 336 (508)
T KOG0275|consen 293 ETGQCLR---------------------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQ---TVRIHGLK 336 (508)
T ss_pred ecchHHH---------------------------------HhhhhhccCeeEEEEccCcchhhcccccc---eEEEeccc
Confidence 8874421 01237999999999999999999999988 99999999
Q ss_pred CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC--CCeEEEEEcCCC-CEEEEEECCC
Q 005235 528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL--KEVSSIAIHPAG-DNLIVGSREG 602 (707)
Q Consensus 528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~--~~I~sl~~spdg-~~L~sGs~Dg 602 (707)
.+++. ..| +|.+.|+.+.|.++|..+++++ ||+|++|+..+.+++.++.... -+|+++-.-|.+ .+++++...+
T Consensus 337 SGK~L-KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 337 SGKCL-KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred cchhH-HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 99998 899 9999999999999999999988 9999999999999999887543 457888777755 6889999999
Q ss_pred cEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235 603 KLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
+|+|.++. + +.++.+... .+...+++.||.|.++.+.+.|+.++.|.+ .++.+ -.++.-|...
T Consensus 416 tv~imn~q-G-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~------~sG~L---E~tl~VhEkd--- 481 (508)
T KOG0275|consen 416 TVYIMNMQ-G-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV------LSGKL---ERTLPVHEKD--- 481 (508)
T ss_pred eEEEEecc-c-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe------ecCce---eeeeeccccc---
Confidence 99999986 3 667777543 345677889999999999999999999943 34443 5677788877
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|..++-||.+..|++-+.||.+++|.
T Consensus 482 -vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 -VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -ccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999995
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=212.25 Aligned_cols=241 Identities=17% Similarity=0.210 Sum_probs=206.8
Q ss_pred EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235 412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
+.+.. .++|.++.|+-+|+ +.++++.|.+|++|++..+.. ....
T Consensus 11 ~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l----------------------------------iktY 55 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL----------------------------------IKTY 55 (307)
T ss_pred eeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccce----------------------------------eeee
Confidence 34444 78999999999995 899999999999999866522 1235
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
.+|...|..++.+.+...|++++.|. .|.+||+++++.. +.| +|.+.|+.+.|+.+...+++|+ |.+|++||.+
T Consensus 56 sghG~EVlD~~~s~Dnskf~s~GgDk---~v~vwDV~TGkv~-Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 56 SGHGHEVLDAALSSDNSKFASCGGDK---AVQVWDVNTGKVD-RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR 131 (307)
T ss_pred cCCCceeeeccccccccccccCCCCc---eEEEEEcccCeee-eecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence 68999999999999999999999877 9999999999998 999 9999999999999999999999 9999999998
Q ss_pred CC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 569 KQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 569 ~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
+. ++++.+......|.++.++ +..|++||.||+++.||++.+ +.. -.....+|+++.|+++++....++.|++
T Consensus 132 S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G-~l~--sDy~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG-TLS--SDYFGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc-eee--hhhcCCcceeEEecCCCCEEEEeeccce
Confidence 64 7888888888889999986 678999999999999999987 333 2344678999999999999999999999
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+++. |-.++.+ ++..+||... .--.++++......+++|+.||.|.+|||
T Consensus 207 lrLl------Dk~tGkl---L~sYkGhkn~--eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 207 LRLL------DKETGKL---LKSYKGHKNM--EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeec------ccchhHH---HHHhcccccc--eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 9999 5555655 7888899764 12456778888889999999999999996
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-24 Score=236.05 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=219.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
+.++.| ....|.+|+..+|........ .+.|++|.|+++| ..|+++..+|.|.|||.......
T Consensus 189 n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~-------------- 252 (484)
T KOG0305|consen 189 NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT-------------- 252 (484)
T ss_pred CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc--------------
Confidence 355554 445799999999997766666 8999999999999 47888889999999997654221
Q ss_pred ccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
..+.. |...|.+++|. +..+.+|+.++ .|.++|++........+ .|...|..+
T Consensus 253 --------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~---~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 253 --------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDG---KILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred --------------------ccccCCcCceeEEEecc--CceEEEecCCC---cEEEEEEecchhhhhhhhcccceeeee
Confidence 12234 89999999998 77899999988 99999999887773335 899999999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEE--ECCCcEEEEECCCCCcceEEeec
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA-GDNLIVG--SREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sG--s~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
.|++++.+|++|+ |+.+.|||.....+..++..|...|.+++|+|- ...||+| +.|+.|++||..++ ..+..+..
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt 386 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT 386 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEeccccc
Confidence 9999999999998 999999999888899999999999999999995 4677875 57999999999977 55665543
Q ss_pred CCCCEEEEEEcCCCCEEEEE--eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 622 HPKDITNVAFHRSYPLFASC--SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSg--s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
...|.+|.|++.++-|+++ ..++.|.||.. .+ ..++..+.||... |..++++|||..|++|++|
T Consensus 387 -gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~------ps---~~~~~~l~gH~~R----Vl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 387 -GSQVCSLIWSKKYKELLSTHGYSENQITLWKY------PS---MKLVAELLGHTSR----VLYLALSPDGETIVTGAAD 452 (484)
T ss_pred -CCceeeEEEcCCCCEEEEecCCCCCcEEEEec------cc---cceeeeecCCcce----eEEEEECCCCCEEEEeccc
Confidence 5679999999999755553 35678999944 23 3458899999998 9999999999999999999
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
.++++|++
T Consensus 453 ETlrfw~~ 460 (484)
T KOG0305|consen 453 ETLRFWNL 460 (484)
T ss_pred CcEEeccc
Confidence 99999985
No 63
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7.7e-26 Score=240.29 Aligned_cols=379 Identities=21% Similarity=0.276 Sum_probs=272.2
Q ss_pred CCCCCCCccccccccCCcccccCCCCC-CCCCCCCCChH-HHHHHHHHHHHHHcCccccCCCCCccccccccccCCCchH
Q 005235 198 HTDFDQYADYVDWFKYDDALHPLSNAP-EPKRRFIPSKW-ESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAA 275 (707)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~k~~f~psk~-e~~~v~klv~~ir~g~~~~~~~~~~~~~~~~lW~~~~~~~ 275 (707)
.++|||.++|+ |+.++...+...-| +.|..|+|+|. ..++|..+-++||+.+ ++++||+-+.....
T Consensus 298 eESYNPP~EYL--~~~eE~~~we~~E~~~R~l~F~P~ky~sLR~VPaY~r~irErF----------eRcLDLYL~PR~rK 365 (733)
T KOG0650|consen 298 EESYNPPEEYL--FDEEEKKAWEEAEPEDRKLNFIPQKYKSLRKVPAYERSIRERF----------ERCLDLYLAPRVRK 365 (733)
T ss_pred ccccCCchhhc--cCHHHhhhhhhccccccccccccccchhhhcchhHHHHHHHHH----------HHhHHhhhCccccc
Confidence 46899999999 77677666665555 44667999998 8899999999999988 56888887765433
Q ss_pred Hhhcc-----ccCCCCCC----------CCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccce
Q 005235 276 EKAKH-----LAYIPAPK----------PKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTS 332 (707)
Q Consensus 276 ~~~~~-----~~~~papk----------~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~ 332 (707)
.+... ...||.|+ +-..||.. |-.|.|++|++++. ++.|+. ..+.|
T Consensus 366 ~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi-----------~TgRc 434 (733)
T KOG0650|consen 366 MRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEI-----------ATGRC 434 (733)
T ss_pred ceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEe-----------ecceE
Confidence 22221 34566554 44668876 78899999999655 456654 45667
Q ss_pred ecccccccccccccceeeeeEEEcCccccceeecCCC-C--CCC-CCCCCCCCcccCCCCcEEEEE----eCCCcEEEEe
Q 005235 333 LRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPE-T--LKP-KLPSRKDLKPYPVACYLEYKG----STDGTVRIWE 404 (707)
Q Consensus 333 lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~-~--llp-~lp~~~~l~pfp~~~~~l~sg----s~DgtVrIWd 404 (707)
+++++.-. .| ..+.|+|.....-|.+..+ . +++ .+- ..+...++. .+++++ ..++.|..|.
T Consensus 435 vr~~~~d~-~I-------~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G--~~~e~~~t~-ell~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 435 VRTVQFDS-EI-------RSVAWNPLSDLCVLAVAVGECVLIVNPIFG--DRLEVGPTK-ELLASAPNESEPDAAVVTWS 503 (733)
T ss_pred EEEEeecc-ee-------EEEEecCCCCceeEEEEecCceEEeCcccc--chhhhcchh-hhhhcCCCccCCcccceeec
Confidence 77774322 22 4567888776655544221 2 111 111 011111111 122222 4567888897
Q ss_pred CCC---Ce--EEEEEecCCcEEEEEEccCCCccEEEEEeCC---eEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235 405 VES---GR--CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ---DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476 (707)
Q Consensus 405 ~~t---g~--~l~~l~~~~~V~~v~~spdg~~~lla~s~d~---~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~ 476 (707)
-.. ++ ...++.+...|..|.|+..|+ +|++++.++ .|.|.++.....
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~s------------------------ 558 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKS------------------------ 558 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEecccccc------------------------
Confidence 542 11 223667789999999999995 666666543 455555433211
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~ 555 (707)
+..+..-.+.|.++.|||...+|++++. +.|+|||+.++... ..+ .....|..++.||.|..|+
T Consensus 559 ----------Q~PF~kskG~vq~v~FHPs~p~lfVaTq----~~vRiYdL~kqelv-KkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 559 ----------QSPFRKSKGLVQRVKFHPSKPYLFVATQ----RSVRIYDLSKQELV-KKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred ----------cCchhhcCCceeEEEecCCCceEEEEec----cceEEEehhHHHHH-HHHhcCCeeeeeeeecCCCCeEE
Confidence 1123345678999999999999988885 38999999997766 555 6677899999999999999
Q ss_pred EEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCC
Q 005235 556 VST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKD 625 (707)
Q Consensus 556 v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~ 625 (707)
+++ |+.++.||+.-. ++.+++..|...+++++||+.-.++++|+.||.+.||.-.-. -.|++.|++|...
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 998 999999999854 788899999999999999999999999999999999853211 1578899999765
Q ss_pred ----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 626 ----ITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 626 ----I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
|..+.|||..++|+|++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999999999999999999
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1e-24 Score=224.38 Aligned_cols=276 Identities=19% Similarity=0.291 Sum_probs=232.5
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~ 458 (707)
.+.+.|. ...+.+|+.|.++.++|..+++.+.++++ .-.|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 224 ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~------ 295 (506)
T KOG0289|consen 224 ALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE------ 295 (506)
T ss_pred EEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh-heeecCCcceEEeeccccccC------
Confidence 3333444 46899999999999999999999999998 78899999999984 788888999999998765421
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK- 537 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~- 537 (707)
......|..+|+.+..||.|.||++++.|+ ++.+.|++.+... ....
T Consensus 296 ----------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~l-t~vs~ 343 (506)
T KOG0289|consen 296 ----------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQL-TVVSD 343 (506)
T ss_pred ----------------------------ccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEE-EEEee
Confidence 123568999999999999999999999998 9999999999876 4442
Q ss_pred --cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 538 --LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 538 --~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
..-.+++.+|||||.+|.+|+ |+.|+|||+..+..+..|.+|.++|.+++|+-+|-+|++++.|+.|++||++.. +
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~ 422 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-K 422 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-c
Confidence 234589999999999999998 999999999999999999999999999999999999999999999999999976 5
Q ss_pred ceEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235 615 PYRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693 (707)
Q Consensus 615 ~~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L 693 (707)
.++++.-.. ..|.++.|.+.|.+|+.++.|=.|+++.- .......+..+..|.+. .+.+.|....++|
T Consensus 423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k-------~~k~W~~~~~~~~~sg~----st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK-------KTKSWTEIKELADHSGL----STGVRFGEHAQYL 491 (506)
T ss_pred ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEec-------ccccceeeehhhhcccc----cceeeecccceEE
Confidence 677665432 46999999999999999987766666631 12223357778888866 8999999999999
Q ss_pred EEEeCCCcEEEEeC
Q 005235 694 FTAGADSVIRLYCH 707 (707)
Q Consensus 694 ~s~g~Dg~IrlWdl 707 (707)
+++|.|..++++.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 99999999999864
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.3e-24 Score=244.22 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=218.7
Q ss_pred CcEEEEEe--CCCcEEEEeCCCC------------eEEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC-C
Q 005235 388 CYLEYKGS--TDGTVRIWEVESG------------RCLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG-N 451 (707)
Q Consensus 388 ~~~l~sgs--~DgtVrIWd~~tg------------~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~-~ 451 (707)
+..++||+ .||.++||+...- +.+.+. .+.+.|+|+.|+||| .+|++|+.|..|.||.-... .
T Consensus 25 g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~ 103 (942)
T KOG0973|consen 25 GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGS 103 (942)
T ss_pred ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCC
Confidence 35899999 9999999997531 112222 238999999999999 47888888889999996531 0
Q ss_pred chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
... +-+.+....+.-|. ....+.+|.+.|..++|+|++.+||+++.|+ +|.||+..+...
T Consensus 104 ~~~-------------fgs~g~~~~vE~wk----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn---sViiwn~~tF~~ 163 (942)
T KOG0973|consen 104 GTV-------------FGSTGGAKNVESWK----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDN---SVIIWNAKTFEL 163 (942)
T ss_pred ccc-------------ccccccccccceee----EEEEEecCCCccceeccCCCccEEEEecccc---eEEEEcccccee
Confidence 000 01112233444552 2345779999999999999999999999998 999999999977
Q ss_pred eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC------CCeEEEEEcCCCCEEEEEEC---
Q 005235 532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL------KEVSSIAIHPAGDNLIVGSR--- 600 (707)
Q Consensus 532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~------~~I~sl~~spdg~~L~sGs~--- 600 (707)
. ..+ +|.+.|..+.|.|-|++|++-+ |++|+||.+.+-.+.+.+..+- ..+..+.|||||.+|++...
T Consensus 164 ~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 164 L-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred e-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 6 777 9999999999999999999988 8999999988777777765432 34788999999999998632
Q ss_pred -CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-------------C----CEEEEEeCCCcEEEEecccccCCCCCC
Q 005235 601 -EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-------------Y----PLFASCSDDCTAYVFHGMVYSDLNQNP 662 (707)
Q Consensus 601 -Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-------------g----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~ 662 (707)
-..+.|.+-.+. +.-..|-+|.+++.+++|+|. + ..+|+||.|++|-||... ...|
T Consensus 243 ~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~-----~~RP 316 (942)
T KOG0973|consen 243 GKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA-----LPRP 316 (942)
T ss_pred CcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC-----CCCc
Confidence 235888888766 566788999999999999982 1 168899999999999532 2223
Q ss_pred cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+. .+..+..+. |.+++|+|||-.|+.+|.||+|.+..+
T Consensus 317 l~-vi~~lf~~S------I~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 317 LF-VIHNLFNKS------IVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred hh-hhhhhhcCc------eeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 22 223333443 999999999999999999999998753
No 66
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=7.6e-24 Score=236.78 Aligned_cols=248 Identities=12% Similarity=0.072 Sum_probs=190.6
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc----ceEEecc
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL----DGIRLRH 493 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~----~~~~~~h 493 (707)
..|.....++++ ..+++++.+.....|+...+ ...++....+. ...+.+|
T Consensus 21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg-------------------------~~v~~~~~~G~~~~~~~~l~GH 74 (493)
T PTZ00421 21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGS-------------------------TAVLKHTDYGKLASNPPILLGQ 74 (493)
T ss_pred eccccccccCCC-CCcEeECCceEEEEEecCCc-------------------------eEEeeccccccCCCCCceEeCC
Confidence 345555666675 25777777777778875332 11222211111 1236799
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCc-------eeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeE
Q 005235 494 FKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKL-------SHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNI 562 (707)
Q Consensus 494 ~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~-------~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I 562 (707)
.+.|.+++|+| ++++|++++.|+ +|+||++.... .. ..+ +|...|.+++|+|++ .+|++++ |++|
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~Dg---tIkIWdi~~~~~~~~~~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDG---TIMGWGIPEEGLTQNISDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCC---EEEEEecCCCccccccCcce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 99999999999 889999999998 99999997653 22 456 889999999999986 6788887 9999
Q ss_pred EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEEEEE
Q 005235 563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLFASC 641 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~llaSg 641 (707)
+|||+.+++.+..+.+|...|.+++|+|+|.+|++|+.|+.|++||++++ .++..+.+|.+. +..+.|++++..|+++
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999987 677888889765 4567899988877765
Q ss_pred e----CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 642 S----DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 642 s----~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
+ .|+.|+|||++.. . .++.....+... ++..+.|++++.+|+++| .||+|++|++
T Consensus 230 G~s~s~Dr~VklWDlr~~------~--~p~~~~~~d~~~---~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKM------A--SPYSTVDLDQSS---ALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ecCCCCCCeEEEEeCCCC------C--CceeEeccCCCC---ceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 4 4799999965421 1 134444333322 377788999999999888 5999999985
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-24 Score=211.24 Aligned_cols=275 Identities=15% Similarity=0.217 Sum_probs=223.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
|..++.+|++++.|.++.||-..+|+.+.++.+ .+.|+|+...-+. ..+++++.|.+++|||+.+|..
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~---------- 86 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQ---------- 86 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcE----------
Confidence 677889999999999999999999999999999 8999999999888 4899999999999999988733
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCc-------eee
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKL-------SHR 533 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~-------~~~ 533 (707)
+..| ....+|..+.|+++|++++.+..+. ....|.+++++... ..
T Consensus 87 --------------la~~-----------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~- 140 (327)
T KOG0643|consen 87 --------------LATW-----------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY- 140 (327)
T ss_pred --------------EEEe-----------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce-
Confidence 2333 5678899999999999988876542 45689999998433 22
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
..+ .+...++.+.|.|-+.+|++|. +|.|.+||++++ +.+.....|...|+.|.++|+..++++||.|.+-++||+.
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 333 6678999999999999999998 899999999997 5666667888999999999999999999999999999999
Q ss_pred CCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---------EecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYV---------FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV 681 (707)
Q Consensus 611 ~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~V---------wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV 681 (707)
+- ..++++.. ..+|++.+++|....++.|+.-...-| |..+.| ++. ....+..++||-++ |
T Consensus 221 tl-~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy-h~i---~eEEigrvkGHFGP----I 290 (327)
T KOG0643|consen 221 TL-EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY-HLI---FEEEIGRVKGHFGP----I 290 (327)
T ss_pred ce-eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHH-HHH---HHHHhccccccccC----c
Confidence 77 67777764 578999999998776666543221111 111111 000 01135678999998 9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 682 MDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 682 ~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
++++|||+|+-.+|||.||.|||.
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEE
Confidence 999999999999999999999985
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=8.3e-26 Score=231.40 Aligned_cols=264 Identities=17% Similarity=0.212 Sum_probs=214.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
..|++|+.|..|++|++..++ .+.++.+ .+.|+++.|.+++ .++++++.|+.+++|++.....
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~------------- 253 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL------------- 253 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh-------------
Confidence 589999999999999998776 4555655 7889999999999 5899999999999999766422
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS 545 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v 545 (707)
...+.+|.+.|+++.|......+++|+.|. +|++||+.+..+. .++-....+..+
T Consensus 254 ---------------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DR---tiK~WDl~k~~C~-kt~l~~S~cnDI 308 (459)
T KOG0288|consen 254 ---------------------RHTLSGHTDKVTAAKFKLSHSRVVSGSADR---TIKLWDLQKAYCS-KTVLPGSQCNDI 308 (459)
T ss_pred ---------------------hhhhcccccceeeehhhccccceeeccccc---hhhhhhhhhhhee-ccccccccccce
Confidence 123668999999999988777799999877 9999999998887 544344455566
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-- 622 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-- 622 (707)
+.+ ...++++. |++||+||+++..++.....+ +.|+++..+++|..|.+.+.|.++.++|+++. ....++.+-
T Consensus 309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~ 384 (459)
T KOG0288|consen 309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGF 384 (459)
T ss_pred Eec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccc
Confidence 655 44566666 999999999999999988877 58999999999999999999999999999976 445555432
Q ss_pred --CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 623 --PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 623 --~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
....+.+.|||++.|+|+||.||.|+|| ++.++.+ .+.+...+.. .+|++++|+|.|..|++++.++
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW------~v~tgKl---E~~l~~s~s~--~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVYIW------SVFTGKL---EKVLSLSTSN--AAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEEEE------EccCceE---EEEeccCCCC--cceEEEEEcCCCchhhcccCCc
Confidence 2347899999999999999999999999 4555554 4444433221 2599999999999999999999
Q ss_pred cEEEEe
Q 005235 701 VIRLYC 706 (707)
Q Consensus 701 ~IrlWd 706 (707)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 999994
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=3.4e-24 Score=240.12 Aligned_cols=259 Identities=15% Similarity=0.180 Sum_probs=223.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEE-Eec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRV-LEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~-l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
...+++|+.|++|++|+..++..+.. +.+ .+.|.++++...+ ..+++++.|.++++||..++...
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~------------ 284 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECT------------ 284 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEE------------
Confidence 45889999999999999999999888 777 8999999998733 47999999999999998776432
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS 544 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~ 544 (707)
..+.+|.+.|.++... +.++++|+.|. +|++|++.++..+ ..+ +|.++|.+
T Consensus 285 ----------------------~~l~gh~stv~~~~~~--~~~~~sgs~D~---tVkVW~v~n~~~l-~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 285 ----------------------HSLQGHTSSVRCLTID--PFLLVSGSRDN---TVKVWDVTNGACL-NLLRGHTGPVNC 336 (537)
T ss_pred ----------------------EEecCCCceEEEEEcc--CceEeeccCCc---eEEEEeccCcceE-EEeccccccEEE
Confidence 2466899999999864 55788889988 9999999999988 888 69999999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
+..+ +.++++|+ |++|++||+.++++++++.+|..+|.++.+.+. ..+++|+.|+.|++||+.+..+++.++.+|.
T Consensus 337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~ 413 (537)
T KOG0274|consen 337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT 413 (537)
T ss_pred EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence 9998 78888888 999999999999999999999999999988755 8999999999999999997657899999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
.-+..+.+ .+++|++++.|++|++|| ..++.. ++++.+ |... |..+++. ...+++++.||++
T Consensus 414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD------~~~~~~---~~~~~~~~~~~----v~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 414 SLVSSLLL--RDNFLVSSSADGTIKLWD------AEEGEC---LRTLEGRHVGG----VSALALG--KEEILCSSDDGSV 476 (537)
T ss_pred cccccccc--ccceeEeccccccEEEee------cccCce---eeeeccCCccc----EEEeecC--cceEEEEecCCee
Confidence 98866655 678999999999999995 444443 778888 5444 8888876 5789999999999
Q ss_pred EEEeC
Q 005235 703 RLYCH 707 (707)
Q Consensus 703 rlWdl 707 (707)
++||+
T Consensus 477 ~l~dl 481 (537)
T KOG0274|consen 477 KLWDL 481 (537)
T ss_pred EEEec
Confidence 99986
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=3.4e-24 Score=216.77 Aligned_cols=312 Identities=17% Similarity=0.130 Sum_probs=247.0
Q ss_pred CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235 288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
-+.+..|.. |.+|...+++|+++ +|+.. |--...+-+-.+++|+..| ..+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGg---------DD~AflW~~~~ge~~~eltgHKDSV-------t~~~------- 113 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGG---------DDLAFLWDISTGEFAGELTGHKDSV-------TCCS------- 113 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCC---------CceEEEEEccCCcceeEecCCCCce-------EEEE-------
Confidence 346777877 58998899999887 23443 4445566666777777765 4444
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCC
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ 440 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~ 440 (707)
|+.++.+|+||+.+|.|+||.+.+|.....+.. -+.+.-|.|+|.+ ..|++++.||
T Consensus 114 ----------------------FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DG 170 (399)
T KOG0296|consen 114 ----------------------FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDG 170 (399)
T ss_pred ----------------------EccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCC
Confidence 446667999999999999999999998888864 6778889999988 5788888999
Q ss_pred eEEEEECCCCC--chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEe--ccCCCeEEEEEcCCCCEEEE
Q 005235 441 DVLILNTGLGN--EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRL--RHFKMVSSVEWHRRGDYLST 511 (707)
Q Consensus 441 ~V~lwd~~~~~--~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~--~h~~~V~~v~~sp~g~~lat 511 (707)
.|.+|.+.... ..+.+++..+.+..|. ++++..+++|++|+..+....... .......++.++..+..++.
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99999998842 3566777777777665 888899999999999877654422 23456788899999999999
Q ss_pred EeCCCCccEEEEEECCCCceeeeee---------ccCCCeEEEEEeC---CCCEEEEEe-CCeEEEEECCCCeEEEEEeC
Q 005235 512 VMPAGESRAIFMHQLSKKLSHRIPF---------KLHGLPVSSVFHP---TRSIFFVST-KKNIRVYDLLKQRLIKKLET 578 (707)
Q Consensus 512 ~s~dg~~~~V~Iwdl~~~~~~~~~~---------~~~~~V~~v~fsp---d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~ 578 (707)
|+.++ .+++-...+++.. ..+ .+...+.||.|.| .-+++++|+ ||+|.|||+.+.++.+.+ .
T Consensus 251 g~~e~---~~~~~~~~sgKVv-~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~ 325 (399)
T KOG0296|consen 251 GNSEG---VACGVNNGSGKVV-NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-E 325 (399)
T ss_pred ccCCc---cEEEEccccceEE-EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-c
Confidence 98887 7777666665544 222 2334455555544 557788888 999999999988776665 4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 579 GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 579 ~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
|...|..+.|-+ ..+|++++.+|.|+.||.+++ ++..++.+|...|.+++++|+.++++|+|.|++.+||.+
T Consensus 326 he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 326 HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CCCceEEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 667899999998 789999999999999999998 889999999999999999999999999999999999953
No 71
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=8.6e-24 Score=232.42 Aligned_cols=304 Identities=17% Similarity=0.216 Sum_probs=244.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---cccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---QRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---~~~~~~v~~~ 464 (707)
.+++.|-.+|+|.|+++..++.+.+|+.. +.|++++|..||...+++++..|.+.+||++...... ..|...+...
T Consensus 215 DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~ 294 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGA 294 (910)
T ss_pred eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccc
Confidence 58999999999999999999999999994 9999999999997656666677999999998764421 1232333333
Q ss_pred ccc-----ccccCCCCcEEEEecCCc-----cceEEeccCCCeEEEEEc-CCCCEEEEEeCCC-----------------
Q 005235 465 ETP-----TAPDDNMASIVSWLQHDK-----LDGIRLRHFKMVSSVEWH-RRGDYLSTVMPAG----------------- 516 (707)
Q Consensus 465 ~~~-----~~~~~~d~~i~iW~~~~~-----~~~~~~~h~~~V~~v~~s-p~g~~lat~s~dg----------------- 516 (707)
.|. +.+++.|..+++|-...+ .+....+|..+..|+.|. .+|..+.+++.|.
T Consensus 295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~ 374 (910)
T KOG1539|consen 295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG 374 (910)
T ss_pred eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence 332 677778888888866532 223356899999999998 5777778877765
Q ss_pred ---------------------------------------------CccEEEEEECCCCceeeeeecc------CCCeEEE
Q 005235 517 ---------------------------------------------ESRAIFMHQLSKKLSHRIPFKL------HGLPVSS 545 (707)
Q Consensus 517 ---------------------------------------------~~~~V~Iwdl~~~~~~~~~~~~------~~~V~~v 545 (707)
+...++.|+++....-...+.+ ...++++
T Consensus 375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av 454 (910)
T KOG1539|consen 375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV 454 (910)
T ss_pred ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence 2334556666655542133333 3788999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l---~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
+.++.|++.++|+ .|+|-+||+++|-...++ ..|..+|+.++...-++.+++++.+|-+.+||.... .+...++
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~- 532 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-VLKKSLR- 532 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc-ceeeeec-
Confidence 9999999999998 899999999999888888 478899999999988899999999999999999866 5666665
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
-...+.++.+|....++|.+.+|-.|+|+|+ .+... ++.|.||++. |++++|||||+||++++.|++
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~------~t~kv---vR~f~gh~nr----itd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDV------VTRKV---VREFWGHGNR----ITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEc------hhhhh---hHHhhccccc----eeeeEeCCCCcEEEEeecCCc
Confidence 3567899999999999999999999999954 33333 7889999998 999999999999999999999
Q ss_pred EEEEeC
Q 005235 702 IRLYCH 707 (707)
Q Consensus 702 IrlWdl 707 (707)
||+||+
T Consensus 600 Ir~wDl 605 (910)
T KOG1539|consen 600 IRTWDL 605 (910)
T ss_pred EEEEec
Confidence 999996
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=220.55 Aligned_cols=284 Identities=19% Similarity=0.314 Sum_probs=228.5
Q ss_pred CCCCCCCCCcc--ccCCCCCccCC---hhhhhhhhccCcCCCCcccCcccceecccccccccc-cccceeeeeEEEcCcc
Q 005235 286 APKPKLPGHEE--SYNPSLEYIPT---QEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAV-KDSFERCMDLYLCPRV 359 (707)
Q Consensus 286 apk~~lpgh~~--synP~ge~L~s---~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i-~e~f~rcldL~l~pr~ 359 (707)
..|.--..|.+ .|||+|.||++ ++.+..|+.+...-|+-. +| .+..++. -+....|+ .
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---kY------QAqd~fMMmd~aVlci--~----- 270 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---KY------QAQDNFMMMDDAVLCI--S----- 270 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh---hh------hhhcceeecccceEEE--e-----
Confidence 34566677877 49999999999 667889986654433320 11 1112221 11111222 2
Q ss_pred ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE
Q 005235 360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS 437 (707)
Q Consensus 360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s 437 (707)
|+.+..++++|+.||.|+||.+.||.|++.|.- ...|+|+.|+.|+ ..+++++
T Consensus 271 ------------------------FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~s 325 (508)
T KOG0275|consen 271 ------------------------FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSAS 325 (508)
T ss_pred ------------------------ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhccc
Confidence 556667999999999999999999999999984 8899999999999 5899999
Q ss_pred eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC
Q 005235 438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE 517 (707)
Q Consensus 438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~ 517 (707)
.|.++++--+.+|.. ...+.+|++.|+...|+++|.++++++.||
T Consensus 326 fD~tvRiHGlKSGK~----------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDg- 370 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKC----------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDG- 370 (508)
T ss_pred ccceEEEeccccchh----------------------------------HHHhcCccccccceEEcCCCCeEEEecCCc-
Confidence 999999987766532 223669999999999999999999999999
Q ss_pred ccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCC---CCeEEEEEc
Q 005235 518 SRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGL---KEVSSIAIH 589 (707)
Q Consensus 518 ~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~s 589 (707)
+|+||+..+..+. .+| +...+|.++..-|.+ ..++++. .++|.|.++. |+.++++..+. +..-+.++|
T Consensus 371 --tvkvW~~KtteC~-~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 371 --TVKVWHGKTTECL-STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred --cEEEecCcchhhh-hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999988 777 445678888888855 5677777 7999999986 77888887543 335667789
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 590 PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 590 pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
|.|.++.+.+.|+.++.|.+.++ ++-.++.-|...|..++-||..++||+-+.||.+++|
T Consensus 447 pkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 99999999999999999999887 7888999999999999999999999999999999999
No 73
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.1e-23 Score=233.15 Aligned_cols=257 Identities=11% Similarity=0.103 Sum_probs=193.9
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235 393 KGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD 471 (707)
Q Consensus 393 sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~ 471 (707)
.|+.++.|++|+......+..+.+ .+.|.+++|+|+....|++++.|++|+||++.++......
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------------- 113 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------------- 113 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------------
Confidence 367789999999888777777776 7899999999974347888999999999998754211000
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT 550 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd 550 (707)
+ ......+.+|...|.+++|+|++..+ ++++.|+ .|+|||+.++... ..+.+...|.+++|+|+
T Consensus 114 -----i------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~-~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 114 -----I------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRA-FQINMPKKLSSLKWNIK 178 (568)
T ss_pred -----c------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEE-EEEecCCcEEEEEECCC
Confidence 0 00112356899999999999998764 6888888 9999999998766 56666678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEE-----EEEcCCCCEEEEEECCC----cEEEEECCCCCcceEEee
Q 005235 551 RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSS-----IAIHPAGDNLIVGSREG----KLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 551 ~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~s-----l~~spdg~~L~sGs~Dg----~I~vwDl~~~~~~~~~l~ 620 (707)
|.+|++++ |+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|++++.|+ .|+|||++....++..+.
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 99999887 899999999999999999999876443 34568899999988774 799999996557777654
Q ss_pred cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 621 CH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 621 ~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
.+ .+.+.....++++.+|++|+.|++|++|++. ... +..+..+. +..+ +.+++|.|...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~------~~~-~~~l~~~~-s~~p----~~g~~f~Pkr~ 319 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS------LGS-IRKVNEYK-SCSP----FRSFGFLPKQI 319 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc------CCc-EEeecccc-cCCC----ccceEEccccc
Confidence 33 3344444556678899999999999999653 221 11222222 3333 78889998643
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=236.67 Aligned_cols=272 Identities=13% Similarity=0.225 Sum_probs=201.0
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc------------c---ccceeeec------cc-ccccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR------------R---VKDLLHVE------TP-TAPDDNM 474 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~------------~---~~~v~~~~------~~-~~~~~~d 474 (707)
.+.|+++.||+|| ++|++||.|+.|+||.+......... . ..++.... .. ...+...
T Consensus 267 ~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 267 KGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred CCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 7999999999999 58999999999999997652110000 0 00000000 00 0011111
Q ss_pred Cc----EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC-
Q 005235 475 AS----IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP- 549 (707)
Q Consensus 475 ~~----i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp- 549 (707)
.. ..++-+.....+.+.+|.+.|..++||.+ ++|++++.|. +|++|++....+. ..|.|..-|+||+|+|
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDK---TVRLWh~~~~~CL-~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDK---TVRLWHPGRKECL-KVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccc---cEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence 11 11122223344557899999999999965 6899999988 9999999999998 8999999999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cC----
Q 005235 550 TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CH---- 622 (707)
Q Consensus 550 d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h---- 622 (707)
|.++|++|+ |+.||||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|+.... ++...+. .|
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKK 498 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccCcc
Confidence 678899999 999999999988777655555 77999999999999999999999999998743 3333222 11
Q ss_pred --CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 623 --PKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 623 --~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
...|+++.|.|..+ .+++.+.|..|+|||+ .+..+ +..|+|+... ..-....|+.||++|++|+.|
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~------~~~~l---v~KfKG~~n~--~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG------RDKDL---VHKFKGFRNT--SSQISASFSSDGKHIVSASED 567 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEec------cchhh---hhhhcccccC--CcceeeeEccCCCEEEEeecC
Confidence 12799999998655 4666778999999954 33333 5667776543 224567899999999999999
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
..|+||++
T Consensus 568 s~VYiW~~ 575 (712)
T KOG0283|consen 568 SWVYIWKN 575 (712)
T ss_pred ceEEEEeC
Confidence 99999984
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-24 Score=212.08 Aligned_cols=293 Identities=20% Similarity=0.285 Sum_probs=233.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--------------h
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--------------E 453 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--------------~ 453 (707)
.++.++|.|.+.+||.+++|+|+.++.+ .+.|+||.|++.+ ..+++++.|++-.||.....-+ .
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 3788999999999999999999999998 8999999999999 4778888999999997321100 0
Q ss_pred hcccccceeeecccccccCCC-CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 454 EQRRVKDLLHVETPTAPDDNM-ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 454 ~~~~~~~v~~~~~~~~~~~~d-~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
...+....-.. -.....| .+|++ .++.+.+|.+.|.+..|-..|+.+++++.|. +..+||+.++...
T Consensus 240 ~e~sDe~~~d~---d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR---TAnlwDVEtge~v 307 (481)
T KOG0300|consen 240 EEHSDEHNRDT---DSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDR---TANLWDVETGEVV 307 (481)
T ss_pred hhccccccccc---ccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccc---cceeeeeccCcee
Confidence 00000000000 0000011 12221 1234778999999999999999999999988 9999999999998
Q ss_pred eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 533 RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 533 ~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
.++ +|....+.++-||..+++++++ |.+.|+||.+.. ..+..|++|...|+++.|.- +..+++||.|.+|+|||+
T Consensus 308 -~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 308 -NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVWDL 385 (481)
T ss_pred -ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeecCCCceEEEeee
Confidence 888 9999999999999999999988 999999999853 56788999999999999975 568999999999999999
Q ss_pred CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc-ceEEeeCCCCCCCCCeeEEEEcC
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV-PLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~-pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
+....++.+++. ..+++.++.+..++++|.--++..|++| |+..+.+.. |...-+||... |.+++|..
T Consensus 386 rNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlf------DlnG~RlaRlPrtsRqgHrRM----V~c~AW~e 454 (481)
T KOG0300|consen 386 RNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLF------DLNGNRLARLPRTSRQGHRRM----VTCCAWLE 454 (481)
T ss_pred ccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEE------ecCCCccccCCccccccccee----eeeeeccc
Confidence 988889998884 5789999999999999999999999999 554444321 23345688877 99999986
Q ss_pred CCC--EEEEEeCCCcEEEEeC
Q 005235 689 RQP--WLFTAGADSVIRLYCH 707 (707)
Q Consensus 689 dg~--~L~s~g~Dg~IrlWdl 707 (707)
+-+ -|+++|.|..+.-|++
T Consensus 455 ehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred cCcccccccccccceeeeeEe
Confidence 655 4899999999999975
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=207.86 Aligned_cols=265 Identities=22% Similarity=0.274 Sum_probs=204.4
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEE--EecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRV--LEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~--l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
+|...|....+++.||-||+||+|+++. |..+-. ..+.++|.+++|+.+| ..+++++.|+.+++||+.++.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q----- 105 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ----- 105 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC-----
Confidence 3433444556788999999999999986 554432 2338999999999999 589999999999999987652
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCceeee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLSHRI 534 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~~~~ 534 (707)
...+..|.++|.++.|-+... .|+||+.|. +|+.||.+..... .
T Consensus 106 ------------------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK---TlKfWD~R~~~pv-~ 151 (347)
T KOG0647|consen 106 ------------------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK---TLKFWDTRSSNPV-A 151 (347)
T ss_pred ------------------------------eeeeeecccceeEEEEecCCCcceeEeccccc---ceeecccCCCCee-e
Confidence 224568999999999988766 899999998 9999999977666 5
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE-EEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 535 PFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL-IKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 535 ~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~-~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
.+.....+.++..- .+++++++ ++.|.+|+|+.+.. .+...... -.+.||++.++.+..+.|+-.|++.|..++.
T Consensus 152 t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 152 TLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred eeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 66667777766543 46788887 99999999987633 22333222 2389999999999999999999999999987
Q ss_pred CC-cceEEeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235 612 SS-KPYRVLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV 681 (707)
Q Consensus 612 ~~-~~~~~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV 681 (707)
+. +.-.+|+.|.. +|++|+|||....|++++.||+..+||-. .... ++....|..+ |
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd------ar~k---Lk~s~~~~qp----I 296 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD------ARTK---LKTSETHPQP----I 296 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch------hhhh---hhccCcCCCc----c
Confidence 41 33446777763 58899999999999999999999999642 2211 5566667776 9
Q ss_pred eEEEEcCCCCEEEEE-eCC
Q 005235 682 MDCKFHPRQPWLFTA-GAD 699 (707)
Q Consensus 682 ~~l~fspdg~~L~s~-g~D 699 (707)
++++|+.+|.++|.+ |.|
T Consensus 297 tcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceeEecCCCCEEEEEeecc
Confidence 999999999988655 444
No 77
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.1e-22 Score=228.66 Aligned_cols=220 Identities=10% Similarity=0.005 Sum_probs=166.9
Q ss_pred CCCcEEEEecCCcc-ceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCce-------eeeee-ccCCCe
Q 005235 473 NMASIVSWLQHDKL-DGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLS-------HRIPF-KLHGLP 542 (707)
Q Consensus 473 ~d~~i~iW~~~~~~-~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~-------~~~~~-~~~~~V 542 (707)
..+.+.+|+..... ...+.+|.+.|.+++|+|+ +.+||+|+.|+ .|+||++..... ....+ .|...|
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCCCcE
Confidence 34556666654332 2346789999999999996 78999999998 999999976421 11345 788999
Q ss_pred EEEEEeCCCCEE-EEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 543 VSSVFHPTRSIF-FVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 543 ~~v~fspd~~~l-~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
.+++|+|++..+ ++++ |++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||++++ .++..+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFH 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEe
Confidence 999999998765 5666 9999999999998777776 4578999999999999999999999999999987 6778899
Q ss_pred cCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 621 CHPKDITN-----VAFHRSYPLFASCSDDC----TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 621 ~h~~~I~~-----vafspdg~llaSgs~Dg----~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
+|.+.+.+ ..|++++.+|++++.|+ +|+|||++.. . .|+..+..+... ..+......+++.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~--~pl~~~~ld~~~--~~L~p~~D~~tg~ 276 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------T--SALVTMSIDNAS--APLIPHYDESTGL 276 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------C--CceEEEEecCCc--cceEEeeeCCCCC
Confidence 99876543 34568889999888764 7999965421 1 234444333321 0133344455688
Q ss_pred EEEEEeCCCcEEEEeC
Q 005235 692 WLFTAGADSVIRLYCH 707 (707)
Q Consensus 692 ~L~s~g~Dg~IrlWdl 707 (707)
++++|+.|++|++|++
T Consensus 277 l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEEECCCeEEEEEc
Confidence 8999999999999985
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-22 Score=202.48 Aligned_cols=267 Identities=18% Similarity=0.238 Sum_probs=212.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
|..++.++++++.|.+|+|||..+|.+++++.. .-.|..++|..... .++.++. |.+|+..++.+.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN---------- 90 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN---------- 90 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC----------
Confidence 566778999999999999999999999999988 66788888877663 5666665 678888776543
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG 540 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~ 540 (707)
+.+..+.+|...|.+++.+|-++.|++++.|. +|++||++...++ ..+...+
T Consensus 91 ------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~---tvrLWDlR~~~cq-g~l~~~~ 142 (311)
T KOG1446|consen 91 ------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK---TVRLWDLRVKKCQ-GLLNLSG 142 (311)
T ss_pred ------------------------ceEEEcCCCCceEEEEEecCCCCeEEecccCC---eEEeeEecCCCCc-eEEecCC
Confidence 22234679999999999999999999999998 9999999988876 4442222
Q ss_pred CeEEEEEeCCCCEEEEEeC-CeEEEEECCCC--eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 541 LPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQ--RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~--~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
-..++|.|.|-++|++.. ..|++||++.- .+..++... ....+.|.|||+|++|+.++..+.++|.|.-.| .
T Consensus 143 -~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~ 220 (311)
T KOG1446|consen 143 -RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-T 220 (311)
T ss_pred -CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-c
Confidence 235799999999999984 59999999863 344444433 466899999999999999999999999999887 5
Q ss_pred ceEEeecCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCC
Q 005235 615 PYRVLKCHPKDI---TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 615 ~~~~l~~h~~~I---~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg 690 (707)
...++..+...- -+.+|+|+++++++|++||+|.+|++. ++. .+..+++ +... +.++.|.|.-
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~------tg~---~v~~~~~~~~~~----~~~~~fnP~~ 287 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE------TGK---KVAVLRGPNGGP----VSCVRFNPRY 287 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC------CCc---EeeEecCCCCCC----ccccccCCce
Confidence 778888776543 578899999999999999999999653 332 3677777 5665 9999999976
Q ss_pred CEEEEEeCCCcEEEEe
Q 005235 691 PWLFTAGADSVIRLYC 706 (707)
Q Consensus 691 ~~L~s~g~Dg~IrlWd 706 (707)
..++|+ +..+-+|-
T Consensus 288 ~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 288 AMFVSA--SSNLVFWL 301 (311)
T ss_pred eeeeec--CceEEEEe
Confidence 666665 45777773
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=8.9e-25 Score=210.72 Aligned_cols=228 Identities=15% Similarity=0.188 Sum_probs=203.0
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
.+....++++.|-+.+|||..||..+.+|++...|.+++|+.|. ..|++++.+.-++|+|++..+..
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~Ap------------ 135 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAP------------ 135 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCC------------
Confidence 34456778899999999999999999999999999999999998 48999999999999997664321
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS 545 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v 545 (707)
...+.+|.+.|..+.|....+.|++.+.|+ +|++||.+++... ..+..+.+|+++
T Consensus 136 ---------------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt~v-~sL~~~s~VtSl 190 (334)
T KOG0278|consen 136 ---------------------PKEISGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGTEV-QSLEFNSPVTSL 190 (334)
T ss_pred ---------------------chhhcCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCcEE-EEEecCCCCcce
Confidence 112558999999999999889999988887 9999999999988 888888999999
Q ss_pred EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCC
Q 005235 546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPK 624 (707)
Q Consensus 546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~ 624 (707)
..+++|.+|.++..+.|.+||..+-.+++.+... ..|.+..++|+...+++|+.|..++.||..++. .+..+ ++|-+
T Consensus 191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~nkgh~g 268 (334)
T KOG0278|consen 191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYNKGHFG 268 (334)
T ss_pred eeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCc-eeeecccCCCC
Confidence 9999999999999999999999999999888766 568999999999999999999999999999984 45554 89999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+|.||.|+|+|.+.|+||.||+|+||.+.
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 99999999999999999999999999654
No 80
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=3e-22 Score=223.95 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=181.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEE-------------EEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLR-------------VLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNE 452 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~-------------~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~ 452 (707)
+..+++++.+..+..|+...|..+. .+.+ .+.|.+++|+| ++ ..|++++.|++|++|++..+..
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~ 110 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGL 110 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCcc
Confidence 3456677777777777765443331 1222 67899999999 66 4788899999999999865421
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCce
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
... .......+.+|...|.+++|+|++ ++|++++.|+ .|+|||+.++..
T Consensus 111 ~~~---------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg---tVrIWDl~tg~~ 160 (493)
T PTZ00421 111 TQN---------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM---VVNVWDVERGKA 160 (493)
T ss_pred ccc---------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC---EEEEEECCCCeE
Confidence 000 001122356899999999999985 6999999988 999999999877
Q ss_pred eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-eEEEEEcCCCCEEEEEE----CCCcE
Q 005235 532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE-VSSIAIHPAGDNLIVGS----REGKL 604 (707)
Q Consensus 532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~-I~sl~~spdg~~L~sGs----~Dg~I 604 (707)
. ..+ .|...|.+++|+|++.+|++++ |++|+|||+++++.+..+.+|.+. +..+.|++++..|++++ .|+.|
T Consensus 161 ~-~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 161 V-EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred E-EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 6 777 7889999999999999999998 999999999999999999888754 45678899888887654 47899
Q ss_pred EEEECCCCCcceEEeecCC-CCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q 005235 605 CWFDMDLSSKPYRVLKCHP-KDITNVAFHRSYPLFASCS-DDCTAYVFHGM 653 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~-~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~ 653 (707)
++||++....++.....+. ..+..+.|++++.+|++|+ .||.|++|++.
T Consensus 240 klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 9999987766776665443 4566778999999998887 59999999653
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-22 Score=189.47 Aligned_cols=280 Identities=20% Similarity=0.303 Sum_probs=217.6
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC------CC----------eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVE------SG----------RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~------tg----------~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
|.+.+.+.+.||...++||.-.. .+ .|.+.-.+.+.|.|++|+|.|+ .|++++.|.+|++.-+
T Consensus 40 fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~f 118 (350)
T KOG0641|consen 40 FHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPF 118 (350)
T ss_pred ecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEec
Confidence 55566788899999999987532 11 1222222389999999999994 5667778889988776
Q ss_pred CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC----CCCEEEEEeCCCCccEEEE
Q 005235 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR----RGDYLSTVMPAGESRAIFM 523 (707)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp----~g~~lat~s~dg~~~~V~I 523 (707)
+.......++ ...+.-|.+.|..++|.. .|..|++++. | +..|.+
T Consensus 119 n~dt~~~~g~-----------------------------dle~nmhdgtirdl~fld~~~s~~~il~s~ga-g-dc~iy~ 167 (350)
T KOG0641|consen 119 NADTCNATGH-----------------------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGA-G-DCKIYI 167 (350)
T ss_pred ccccccccCc-----------------------------ceeeeecCCceeeeEEecCCCcCceEEEecCC-C-cceEEE
Confidence 5432221111 113557899999999954 3556776664 2 458888
Q ss_pred EECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-------CCCCeEEEEEcCCCCE
Q 005235 524 HQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-------GLKEVSSIAIHPAGDN 594 (707)
Q Consensus 524 wdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-------~~~~I~sl~~spdg~~ 594 (707)
-|..+++.. ..+ +|.+.|.++ ++-++-.|++|+ |.+||+||++-..++.++.. ....|.++++.|.|++
T Consensus 168 tdc~~g~~~-~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 168 TDCGRGQGF-HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred eecCCCCcc-eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 888888776 777 899998876 344577888888 89999999999888887653 1256999999999999
Q ss_pred EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235 595 LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT 674 (707)
Q Consensus 595 L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~ 674 (707)
|++|-.|....+||++-+ ++++.+..|+..|++|.|||...+|.+||.|..|++-|+. +|+... .|+.....|.
T Consensus 246 l~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq--gdla~e---l~~~vv~ehk 319 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ--GDLAHE---LPIMVVAEHK 319 (350)
T ss_pred eeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc--cchhhc---CceEEEEecc
Confidence 999999999999999965 9999999999999999999999999999999999999653 133222 2466777888
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 675 SSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 675 ~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.. +..+.|||+.--+++.++|.++.+|.+
T Consensus 320 dk----~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 320 DK----AIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred Cc----eEEEEecCccceeeeccCcceEEEecc
Confidence 87 999999999988999999999999964
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.5e-24 Score=227.90 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=220.7
Q ss_pred CCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe------EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC
Q 005235 378 RKDLKPYPVACYLEYKGSTDGTVRIWEVESGR------CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG 450 (707)
Q Consensus 378 ~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~------~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~ 450 (707)
...|++-.....+|||||.||.|++|++..-. ++.++++ .+.|+.++.+.+++ .+++++.|-+|++|+...+
T Consensus 27 ~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 27 TKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccC
Confidence 34555656677799999999999999986422 3555655 88999999999994 7999999999999997654
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE-cCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW-HRRGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~-sp~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
.. .....+..|...|.|+++ -++...+|+|+.|+ .|.+||++++
T Consensus 106 ~~--------------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~---~IflWDin~~ 150 (735)
T KOG0308|consen 106 NT--------------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR---KIFLWDINTG 150 (735)
T ss_pred cc--------------------------------hhHhhhhcccchheeeeecccCceeEEecCCCc---cEEEEEccCc
Confidence 20 011235689999999999 77888999999988 9999999977
Q ss_pred ce--e-------eeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235 530 LS--H-------RIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 530 ~~--~-------~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s 597 (707)
.. . ...+ ++...|.+++.++.|..|++|+ ++.+++||.++++.+.+|.+|...|.++.++++|..+++
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence 33 1 0112 5677899999999998888777 899999999999999999999999999999999999999
Q ss_pred EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC
Q 005235 598 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN 677 (707)
Q Consensus 598 Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~ 677 (707)
||.||+|++||+... +++.++..|...|+++..+|+-..+++|+.||.|..=+++.+ .. ....++ ...+
T Consensus 231 ~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~------~~--~tlick-~daP- 299 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP------AK--STLICK-EDAP- 299 (735)
T ss_pred cCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc------hh--heEeec-CCCc-
Confidence 999999999999866 899999999999999999999999999999999998855432 11 111222 1222
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 678 GRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 678 ~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|..+..+.+..-+-+++.|+.|+-|.
T Consensus 300 ---v~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 300 ---VLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ---hhhhhhccccCCceeeeccccceecC
Confidence 66666663333334556678888774
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-23 Score=216.00 Aligned_cols=264 Identities=16% Similarity=0.249 Sum_probs=203.9
Q ss_pred EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235 413 VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR 492 (707)
Q Consensus 413 ~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~ 492 (707)
.+.+.+.|+.+.+.|+....+++.+.++.|.|||........... + .......+.+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------~-----------~~~Pdl~L~g 175 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------G-----------ECRPDLRLKG 175 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------c-----------cCCCceEEEe
Confidence 456689999999999985334444567899999976542211000 0 0011124668
Q ss_pred cCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCcee------eeee-ccCCCeEEEEEeCCCCEEE-EEe-CCeE
Q 005235 493 HFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSH------RIPF-KLHGLPVSSVFHPTRSIFF-VST-KKNI 562 (707)
Q Consensus 493 h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~------~~~~-~~~~~V~~v~fspd~~~l~-v~s-dg~I 562 (707)
|...-.+++|++.. .+|++++.|+ .|++||+...... ...| .|...|..++||+....++ +++ |+.+
T Consensus 176 H~~eg~glsWn~~~~g~Lls~~~d~---~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L 252 (422)
T KOG0264|consen 176 HEKEGYGLSWNRQQEGTLLSGSDDH---TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKL 252 (422)
T ss_pred ecccccccccccccceeEeeccCCC---cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeE
Confidence 88888899999854 5788899888 9999999765441 1345 8999999999999765544 444 8999
Q ss_pred EEEECC--CCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC-CEE
Q 005235 563 RVYDLL--KQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY-PLF 638 (707)
Q Consensus 563 ~iwDl~--~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg-~ll 638 (707)
.|||++ +.++.+...+|.+.|.|++|+|-+ ..||+||.|++|++||++....++.++.+|...|.+|.|||.. .+|
T Consensus 253 ~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 253 MIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred EEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCcee
Confidence 999999 567778888999999999999965 5678999999999999999889999999999999999999965 599
Q ss_pred EEEeCCCcEEEEecccccCCC-----CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 005235 639 ASCSDDCTAYVFHGMVYSDLN-----QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLYCH 707 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~-----~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlWdl 707 (707)
||++.|+.+.|||+...+.-. +.....++..-.||+.. |.++.|+|..+|+ +|++.|+.+.||..
T Consensus 333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k----V~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK----VSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc----cccccCCCCCCeEEEEecCCceEEEeec
Confidence 999999999999876432221 11112245666788887 9999999999985 78899999999963
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=9.4e-22 Score=206.59 Aligned_cols=263 Identities=11% Similarity=0.124 Sum_probs=192.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccE-EEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPV-LAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~l-la~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++++.|+.|++||+.+++++..+.....+.+++|+|++. .+ ++++.++.|.+|++.++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~-------------- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGK-LLYVCASDSDTIQVIDLATGEVI-------------- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCC-EEEEEECCCCeEEEEECCCCcEE--------------
Confidence 478899999999999999999999988766688999999994 44 34456789999997654211
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~ 546 (707)
..+.. ...+..++|+|+|+.+++++ .++ .|.+||+.+.... ..+.....+.+++
T Consensus 67 --------------------~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~---~l~~~d~~~~~~~-~~~~~~~~~~~~~ 121 (300)
T TIGR03866 67 --------------------GTLPS-GPDPELFALHPNGKILYIANEDDN---LVTVIDIETRKVL-AEIPVGVEPEGMA 121 (300)
T ss_pred --------------------EeccC-CCCccEEEECCCCCEEEEEcCCCC---eEEEEECCCCeEE-eEeeCCCCcceEE
Confidence 00111 22356789999999876654 455 9999999887655 5554445678899
Q ss_pred EeCCCCEEEEEe-C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeecCC
Q 005235 547 FHPTRSIFFVST-K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 547 fspd~~~l~v~s-d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
|+|++.+++++. + ..+.+||+.+++.+..+..+ ..+.+++|+|+|.+|+++ ..++.|.+||+.++ +.+..+..+.
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~ 199 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEI 199 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecc
Confidence 999999999887 4 45788899988777665443 346789999999988655 46899999999876 5555554322
Q ss_pred C-------CEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 624 K-------DITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 624 ~-------~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
. ....++|+|++++++ +.+.++.|.+||. .+... +..+. +... +.+++|+|++.+|++
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~------~~~~~---~~~~~-~~~~----~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA------KTYEV---LDYLL-VGQR----VWQLAFTPDEKYLLT 265 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC------CCCcE---EEEEE-eCCC----cceEEECCCCCEEEE
Confidence 1 234688999999754 4456778999954 33332 23332 2223 899999999999988
Q ss_pred E-eCCCcEEEEeC
Q 005235 696 A-GADSVIRLYCH 707 (707)
Q Consensus 696 ~-g~Dg~IrlWdl 707 (707)
+ +.+|.|++||+
T Consensus 266 ~~~~~~~i~v~d~ 278 (300)
T TIGR03866 266 TNGVSNDVSVIDV 278 (300)
T ss_pred EcCCCCeEEEEEC
Confidence 6 56999999985
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.3e-21 Score=204.81 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=225.4
Q ss_pred eCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-----hcc-cccceeeeccc
Q 005235 395 STDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-----EQR-RVKDLLHVETP 467 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-----~~~-~~~~v~~~~~~ 467 (707)
|.+..+.|||...+..+..... ++.|....|+|.+. .+++.+.-+.+.+|++..+... ..+ ..+.++++.|.
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCC-cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 5567788999988877766665 78899999999984 7888888899999999887431 111 22667888887
Q ss_pred ----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc------------
Q 005235 468 ----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL------------ 530 (707)
Q Consensus 468 ----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~------------ 530 (707)
+.++.++|.|.+|+..+..... ...|.+.|.+++...+|..|- |+.|. .|..||-.-..
T Consensus 256 engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDR---KIILWDDNYRKLRETELPEQFGP 331 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccc---eEEeccccccccccccCchhcCC
Confidence 8999999999999986554432 448999999999999998665 88766 99999832110
Q ss_pred -----------------------------eeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC
Q 005235 531 -----------------------------SHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL 580 (707)
Q Consensus 531 -----------------------------~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~ 580 (707)
.+ ..++|......++.||+...+++++ |+++++|+ ..+++.+....
T Consensus 332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~- 407 (626)
T KOG2106|consen 332 IRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE- 407 (626)
T ss_pred eeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec-
Confidence 00 1125566788899999999999988 89999999 55666555443
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCC
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ 660 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~ 660 (707)
.++.|++|||.| .||+|+..|...+.|.++. ..+..-.. +.++++|+|+|+|.+||.||.|+.|+||.+.. .
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-----~ 479 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-----N 479 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC-----C
Confidence 678999999999 9999999999999999874 44444443 88999999999999999999999999996531 2
Q ss_pred CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+.....+....| .. |+.+.||+|+++|.+-+.|-.|..|.
T Consensus 480 g~~y~r~~k~~g--s~----ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 480 GRKYSRVGKCSG--SP----ITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CcEEEEeeeecC--ce----eEEeeecCCCceEEeccCceEEEEEc
Confidence 222222333344 44 99999999999999999999999993
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3e-23 Score=229.97 Aligned_cols=184 Identities=18% Similarity=0.260 Sum_probs=156.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
++|+++|.|.|||||++....|+++|.+.+.|+||+|+|-.+.++++|+.|+.|+||++.
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~-------------------- 440 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS-------------------- 440 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC--------------------
Confidence 489999999999999999999999999999999999999888899999999999999975
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---cc------C
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KL------H 539 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~------~ 539 (707)
+..|..|+ .....|++++|.|+|++.+.|+.+| .+++|+....+.+ ..+ -+ .
T Consensus 441 -----d~~Vv~W~----------Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~-~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 441 -----DKKVVDWN----------DLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLV-SDFHIRLHNKKKKQG 501 (712)
T ss_pred -----cCeeEeeh----------hhhhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEE-EeeeEeeccCccccC
Confidence 34566663 3347899999999999999999999 9999999887765 333 11 2
Q ss_pred CCeEEEEEeCCCC--EEEEEeCCeEEEEECCCCeEEEEEeCCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 540 GLPVSSVFHPTRS--IFFVSTKKNIRVYDLLKQRLIKKLETGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 540 ~~V~~v~fspd~~--~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
..|+.+.|.|..+ .|+++.|..|||||+++..++.+|++..+. -....|+.+|++|++|+.|..|++|+++.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3799999998655 555556999999999988899888875433 34668889999999999999999999853
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=206.42 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=201.3
Q ss_pred CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235 408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD 487 (707)
Q Consensus 408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~ 487 (707)
.+.+..+.+.+.|.+|...+. .|++++.||.+++|+... ...
T Consensus 96 P~pl~~~~hdDWVSsv~~~~~---~IltgsYDg~~riWd~~G-----------------------------------k~~ 137 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGASK---WILTGSYDGTSRIWDLKG-----------------------------------KSI 137 (423)
T ss_pred CCccccccchhhhhhhcccCc---eEEEeecCCeeEEEecCC-----------------------------------ceE
Confidence 344555666778888887733 699999999988888533 233
Q ss_pred eEEeccCCCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeee---ee-ccCCCeEEEEEeCCCCEEEEEe-C
Q 005235 488 GIRLRHFKMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRI---PF-KLHGLPVSSVFHPTRSIFFVST-K 559 (707)
Q Consensus 488 ~~~~~h~~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~---~~-~~~~~V~~v~fspd~~~l~v~s-d 559 (707)
....+|.++|.+++|.-... .|++++.|. ++++|.+..+..... .. +|+..|.+|...+++..+++|+ |
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq---tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D 214 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ---TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD 214 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCc---eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence 35679999999999965444 599999987 999999988765421 12 8999999999999999999999 9
Q ss_pred CeEEEEECC-------------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 560 KNIRVYDLL-------------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 560 g~I~iwDl~-------------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
.+|.||+.. ++.++.++.+|..+|+++.|++ ...++++|.|.+|+.||+.++ .
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg-~ 292 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG-G 292 (423)
T ss_pred ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc-c
Confidence 999999931 1235667889999999999997 779999999999999999998 5
Q ss_pred ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE-E
Q 005235 615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW-L 693 (707)
Q Consensus 615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~-L 693 (707)
...++.+ ...++++.++|...+||+||.|..|++||- ..+..-.+...|.||.+. |.+|.|+|...+ |
T Consensus 293 ~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DP------R~~~gs~v~~s~~gH~nw----Vssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 293 LKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDP------RTGDGSVVSQSLIGHKNW----VSSVKWSPTNEFQL 361 (423)
T ss_pred ceeeeec-CcceeEeecccccceeeecCCCCceeecCC------CCCCCceeEEeeecchhh----hhheecCCCCceEE
Confidence 5555553 577999999999999999999999999954 444444567899999998 999999998875 6
Q ss_pred EEEeCCCcEEEEeC
Q 005235 694 FTAGADSVIRLYCH 707 (707)
Q Consensus 694 ~s~g~Dg~IrlWdl 707 (707)
++|+.|+++++||+
T Consensus 362 ~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDV 375 (423)
T ss_pred EEEecCCeEEEEEe
Confidence 89999999999995
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-22 Score=197.25 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=170.8
Q ss_pred ccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE-EEEEe-CCeEEEEEC
Q 005235 492 RHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI-FFVST-KKNIRVYDL 567 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~-l~v~s-dg~I~iwDl 567 (707)
.-...+..|+|+++. +.+++++.|| +++|||+.........| .|...|.++.|++..+. +++++ |++|++|+.
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDG---SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDG---SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCc---eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 456788999999864 5788888888 99999976655443556 89999999999986544 55566 999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDC 645 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg 645 (707)
..+..+.++.+|...|...+|||. ++.++++|.|+.+++||++..++.+. +..|...|.++.|+. +..+|++|+.|+
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCc
Confidence 999999999999999999999995 57889999999999999998866655 889999999999998 456999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl 707 (707)
.|++||++... +|+.+|.||.-. |..+.|||... .|+|++.|-++||||.
T Consensus 214 ~vr~wDir~~r--------~pl~eL~gh~~A----VRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 214 LVRGWDIRNLR--------TPLFELNGHGLA----VRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred eEEEEehhhcc--------ccceeecCCceE----EEEEecCcchhhHhhhccccceEEeccc
Confidence 99999766322 478999999887 99999999754 7899999999999984
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=201.70 Aligned_cols=265 Identities=18% Similarity=0.242 Sum_probs=199.3
Q ss_pred cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
+.+++.+.+|+||| ..+++++.|..|+|+|++.--... ....+ ..+..+.. ......+..|..
T Consensus 111 HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks--~~~em-------~~~~~qa~-------hPvIRTlYDH~d 173 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKS--KPKEM-------ISGDTQAR-------HPVIRTLYDHVD 173 (430)
T ss_pred cccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhc--chhhh-------ccCCcccC-------CceEeehhhccC
Confidence 36788999999999 367777889999999986321000 00000 00000000 011123668999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCe
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQR 571 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~ 571 (707)
.|+++.|||....|++++.|+ +|+++|+++.... ..| ....+|.++.|||.|.+|++|+| .++++||+.+-+
T Consensus 174 evn~l~FHPre~ILiS~srD~---tvKlFDfsK~saK-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDN---TVKLFDFSKTSAK-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred cccceeecchhheEEeccCCC---eEEEEecccHHHH-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 999999999999999999998 9999999886554 433 56678999999999999999995 899999999987
Q ss_pred EEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCC-CCEEEEEEcCCCCEEEEEeCCCc
Q 005235 572 LIKKLE---TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHP-KDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 572 ~~~~l~---~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~-~~I~~vafspdg~llaSgs~Dg~ 646 (707)
+...-. .|...|+++.+++.|++.++||.||.|++||--++ +++.++. +|. ..|.+..|..+++++.+.+.|..
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 765433 46788999999999999999999999999998765 7777764 564 57999999999999999999999
Q ss_pred EEEEecccccCCC--------------CCCcc------c--------ce------------EEeeCCCCCCCCCeeEEEE
Q 005235 647 AYVFHGMVYSDLN--------------QNPLI------V--------PL------------EILRGHTSSNGRGVMDCKF 686 (707)
Q Consensus 647 I~Vwd~~~~~Dl~--------------~~~~~------~--------pl------------~~l~gh~~~~~~gV~~l~f 686 (707)
|++|.+.+..-+. +.... + .+ ..--||.+. |..+.-
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a----~R~i~H 404 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA----VRWIVH 404 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC----ceEEEe
Confidence 9999654211100 00000 0 00 011367776 899999
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 005235 687 HPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 687 spdg~~L~s~g~Dg~IrlWd 706 (707)
||.++-++|||.|..+|+|-
T Consensus 405 SP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 405 SPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCCceeeecccceeeeee
Confidence 99999999999999999993
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.8e-22 Score=197.17 Aligned_cols=259 Identities=18% Similarity=0.194 Sum_probs=207.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
|....+.|+.++.||++++|++........+.+..++.+++|.++. .+++++.||.|+.+|+.++...
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~~---------- 88 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNED---------- 88 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCcce----------
Confidence 3344456677789999999999998888888999999999999976 7999999999999998876332
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV 543 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~ 543 (707)
.+..|...|.||.+++--..+++|+.|+ +|++||.+..... ..+.....|.
T Consensus 89 -------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~---~ik~wD~R~~~~~-~~~d~~kkVy 139 (323)
T KOG1036|consen 89 -------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDK---TIKFWDPRNKVVV-GTFDQGKKVY 139 (323)
T ss_pred -------------------------eeccCCCceEEEEeeccCCeEEEcccCc---cEEEEeccccccc-cccccCceEE
Confidence 3457999999999999889999999998 9999999875444 5555555788
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cceE
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPYR 617 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~~ 617 (707)
++... +..|++|+ +..|.+|||++.....+.. .-.-.+.|+++-|++.-++++|-||+|.+=.++... ....
T Consensus 140 ~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 140 CMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred EEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 77765 66788876 9999999999865433221 112348999999999999999999999887776541 2334
Q ss_pred EeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 618 VLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 618 ~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
.|+.|.. +|++++|||-...||||+.||.|.+| |+..... ++.|...... |.+++|+.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W------d~~~rKr---l~q~~~~~~S----I~slsfs~ 284 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW------DLFNRKR---LKQLAKYETS----ISSLSFSM 284 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc------cCcchhh---hhhccCCCCc----eEEEEecc
Confidence 6777753 69999999999999999999999999 5544444 5566666555 99999999
Q ss_pred CCCEEEEEeC
Q 005235 689 RQPWLFTAGA 698 (707)
Q Consensus 689 dg~~L~s~g~ 698 (707)
+|..||.|+.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999998874
No 91
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.8e-22 Score=216.79 Aligned_cols=307 Identities=19% Similarity=0.262 Sum_probs=227.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe---------------------EEEEEe-----------cCCcEEEEEEccCCCccEE
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGR---------------------CLRVLE-----------IGEAIQYVAWNPLPELPVL 434 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~---------------------~l~~l~-----------~~~~V~~v~~spdg~~~ll 434 (707)
+..++++||.|..||||.+.-+. ++..+. +.+.|.++.|+|.+ ..|+
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LL 283 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLL 283 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhhe
Confidence 45689999999999999874221 221222 17899999999999 5899
Q ss_pred EEEeCCeEEEEECCCCCc---------hhcccccceeeeccc-----ccccCCCCcEEEEecCCcc----ceEEeccCCC
Q 005235 435 AVSVGQDVLILNTGLGNE---------EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKL----DGIRLRHFKM 496 (707)
Q Consensus 435 a~s~d~~V~lwd~~~~~~---------~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~----~~~~~~h~~~ 496 (707)
+++.|.++.+|.+..... .+.+....++...|. +.+-+..|...+|...... .....+|.+.
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999999876522 111222233333333 5556678889999843321 2236799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-- 569 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-- 569 (707)
|+.|+|+|.|.+|++++.|. +-+++---..+.....+ .|.-.++|++|-+....|++|. ..-+|+|+...
T Consensus 364 V~dv~W~psGeflLsvs~DQ---TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQ---TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred ceeeeecCCCCEEEEecccc---ceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 99999999999999999988 66666543221111233 6777899999988645555555 58889988610
Q ss_pred -----------------------------------------Ce---------------------------------EEEE
Q 005235 570 -----------------------------------------QR---------------------------------LIKK 575 (707)
Q Consensus 570 -----------------------------------------~~---------------------------------~~~~ 575 (707)
|. .+++
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 00 1224
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 576 LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 576 l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
+.+|...|++++++|+|+++|+++... .|++|+..+. ...+.+.+|+-.|+.++|||||++|++.|.|.++.+|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 557878899999999999999987643 4899999877 5566899999999999999999999999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.... ++.... ....++.|+.- |.++.|+|++.++||+|.|.+|++|.+
T Consensus 600 ~~~~--~~~~e~---~fa~~k~HtRI----IWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 600 EVQE--DIKDEF---RFACLKAHTRI----IWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eeec--ccchhh---hhccccccceE----EEEcccCcccceeEEecCCceEEEEec
Confidence 6542 111111 13447788876 999999999999999999999999963
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-22 Score=207.93 Aligned_cols=278 Identities=17% Similarity=0.228 Sum_probs=218.0
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
|.....++++|+.||+++||.+. +...++.+.. ..+|.+.+|.|+|...+++++....++.||+.+....-
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k------ 294 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK------ 294 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc------
Confidence 44445689999999999999886 3445666666 78999999999996578888888899999987653210
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLH 539 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~ 539 (707)
.....++ ...+.....++++++|+..+..| .|.+....++... ..|+..
T Consensus 295 --------------------------~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhakT~eli-~s~Kie 344 (514)
T KOG2055|consen 295 --------------------------LKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAKTKELI-TSFKIE 344 (514)
T ss_pred --------------------------ccCCCCcccchhheeEecCCCCeEEEcccCc---eEEeehhhhhhhh-heeeec
Confidence 0011122 34566778899999999999988 9999998888887 788999
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCC-----C
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-----S 612 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-----~ 612 (707)
+.|..++|+.+++.|++++ +|.|.+||++...++.++.... -.-++++.+++|.+||+||..|.|.|||..+ .
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence 9999999999998887766 8999999999999998887431 2246788899999999999999999999653 2
Q ss_pred CcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
.+|++++..-...|++++|+++.++||.|| ....+++-|+....-....|. ...--+| |+|++|||.+
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~---~n~~vg~-------vtc~aFSP~s 494 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT---SNTKVGH-------VTCMAFSPNS 494 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC---CCCcccc-------eEEEEecCCC
Confidence 377887777778999999999999999888 456899988753221111111 1111122 9999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 005235 691 PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 691 ~~L~s~g~Dg~IrlWdl 707 (707)
-+||.|..+|.|.||.|
T Consensus 495 G~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEeecCCCceeeEee
Confidence 99999999999999975
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5e-22 Score=207.91 Aligned_cols=267 Identities=13% Similarity=0.137 Sum_probs=214.6
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccc-e
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD-G 488 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~ 488 (707)
.+.|.+++|+|... +=++++++-.|.||+..+... .+....+.+.++.|. ++.|+..|.|++++..+... .
T Consensus 26 ~~~vssl~fsp~~P-~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHP-YDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCC-CceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 68899999999874 566677777899999776543 344455667777775 78899999999999555322 2
Q ss_pred EEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEE
Q 005235 489 IRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRV 564 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~i 564 (707)
.+..|+.+|..+.|+|.++ .|++|+.|+ .+++||+++...+ ..+ +|+..|.|.+|+|... .+++|+ ||.|++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~---v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDK---VVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCc---eEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 3678999999999999665 566666666 9999999999876 777 9999999999999766 556666 999999
Q ss_pred EECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235 565 YDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 565 wDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~ 643 (707)
||++.. ..+..+. |..+|.++.+-|.|..+|+++. ..|+|||+-++.+.+..+..|...|+|+++..++..|+|||-
T Consensus 181 ~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 181 WDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 999976 5666664 6689999999999999999875 479999999887777777679999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
|+.|+||+...+. . +..+.-. + +|.+++.+|++..++.|..+|.+.+
T Consensus 259 D~~VKVfd~t~~K------v---v~s~~~~-~----pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 259 DRHVKVFDTTNYK------V---VHSWKYP-G----PVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccceEEEEccceE------E---EEeeecc-c----ceeeEEecCCCceEEEecccceeee
Confidence 9999999644221 1 3333322 2 3999999999999999999998754
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=215.99 Aligned_cols=302 Identities=18% Similarity=0.215 Sum_probs=240.0
Q ss_pred cCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc------hh
Q 005235 384 YPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE------EE 454 (707)
Q Consensus 384 fp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------~~ 454 (707)
|-+++ .++++|+..|.+-+||++..+.+..+.. .+.|....|.|.. ..+++++.|+.+++|-..+++. .-
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 44444 4677888889999999998888877764 6899999999988 4788888999888887664322 11
Q ss_pred cccccceeeeccc-------------------------------------------------------------------
Q 005235 455 QRRVKDLLHVETP------------------------------------------------------------------- 467 (707)
Q Consensus 455 ~~~~~~v~~~~~~------------------------------------------------------------------- 467 (707)
.+|..+..++.|-
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 1122221111110
Q ss_pred ----ccccCCCCcEEEEecCCccceE-EeccC------CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235 468 ----TAPDDNMASIVSWLQHDKLDGI-RLRHF------KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 468 ----~~~~~~d~~i~iW~~~~~~~~~-~~~h~------~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
++..-.+...+.|+......+. ...+. ..+++|+.++.|++.+.|+..| .|-++++..+... ..|
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G---~Id~fNmQSGi~r-~sf 486 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG---TIDRFNMQSGIHR-KSF 486 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC---eEEEEEcccCeee-ccc
Confidence 1222234567788887666643 33444 7889999999999999999888 9999999999887 777
Q ss_pred ----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 537 ----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 ----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
.|.++|++++....++.+++++ +|.+.+||..+..++.++..+ ..+.++..|.....++++..|-.|.++|+.+
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 7899999999999998888887 999999999999888888766 5688999999999999999999999999998
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
. +.++.|.+|+..|++++|||+|++|++++.|++|++| |+.+..++ ..+.-.. + +.++.|+|+|.
T Consensus 566 ~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w------Dlpt~~lI---D~~~vd~-~----~~sls~SPngD 630 (910)
T KOG1539|consen 566 R-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW------DLPTGTLI---DGLLVDS-P----CTSLSFSPNGD 630 (910)
T ss_pred h-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE------eccCccee---eeEecCC-c----ceeeEECCCCC
Confidence 7 7889999999999999999999999999999999999 66666553 3333222 2 88999999999
Q ss_pred EEEEEeCC-CcEEEEe
Q 005235 692 WLFTAGAD-SVIRLYC 706 (707)
Q Consensus 692 ~L~s~g~D-g~IrlWd 706 (707)
+|||+..| .-|.+|.
T Consensus 631 ~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 631 FLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEEEecCceEEEEE
Confidence 99999988 5699994
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=4.8e-22 Score=215.16 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=208.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEE--Eec-CCcEEE-EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRV--LEI-GEAIQY-VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l~~-~~~V~~-v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
..++++|.||++++|+-..++.+.+ +.. .+.|.+ +++-+.....+++++.|.+|.+|.+....+.
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~----------- 94 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL----------- 94 (745)
T ss_pred eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch-----------
Confidence 3689999999999999766665543 332 455555 7776532236999999999999987765442
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
..+.+|.+.|+|++...++. +++||.|. +++||-...-. ..+ +|...|.
T Consensus 95 -----------------------~~LkgH~snVC~ls~~~~~~-~iSgSWD~---TakvW~~~~l~---~~l~gH~asVW 144 (745)
T KOG0301|consen 95 -----------------------YTLKGHKSNVCSLSIGEDGT-LISGSWDS---TAKVWRIGELV---YSLQGHTASVW 144 (745)
T ss_pred -----------------------hhhhccccceeeeecCCcCc-eEeccccc---ceEEecchhhh---cccCCcchhee
Confidence 24679999999999888877 99999998 99999875433 446 9999999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
++++-|.+ .+++|+ |.+|++|.- ++++++|.+|...|..+++-+++ .|++++.||.|++|++. + ..+..+.+|
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-g-e~l~~~~gh 218 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-G-EVLLEMHGH 218 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc-C-ceeeeeecc
Confidence 99999998 555555 999999975 78899999999999999998764 78899999999999994 4 678889999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
+.-|.+++...++..++|++.|++++||+.. .+++.+.-.+.. |+++.+-++|. |++|++||.|
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~~q~I~lPtts----iWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------ECVQVITLPTTS----IWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ceEEEEecCccc----eEEEEEeeCCC-EEEeccCceE
Confidence 9999999988888999999999999999542 345666655555 99999988887 7788899999
Q ss_pred EEEe
Q 005235 703 RLYC 706 (707)
Q Consensus 703 rlWd 706 (707)
|||.
T Consensus 283 rVfT 286 (745)
T KOG0301|consen 283 RVFT 286 (745)
T ss_pred EEEE
Confidence 9996
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=6.9e-22 Score=205.41 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=207.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEE-EE------------------ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLR-VL------------------EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL 449 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~-~l------------------~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~ 449 (707)
.+.|+++.+|+|.-|++.+|+..+ .+ .+...|.+++.++|| .+|++++.|..|.||++.+
T Consensus 155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc
Confidence 489999999999999999987441 11 113568999999999 5888889999999999887
Q ss_pred CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
.... ..+.+|.+.|.+++|-.....|++++.|. +|++|++...
T Consensus 234 ~ehv----------------------------------~~~~ghr~~V~~L~fr~gt~~lys~s~Dr---svkvw~~~~~ 276 (479)
T KOG0299|consen 234 LEHV----------------------------------KVFKGHRGAVSSLAFRKGTSELYSASADR---SVKVWSIDQL 276 (479)
T ss_pred cchh----------------------------------hcccccccceeeeeeecCccceeeeecCC---ceEEEehhHh
Confidence 6432 12568999999999998888999999988 9999999988
Q ss_pred ceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235 530 LSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607 (707)
Q Consensus 530 ~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw 607 (707)
... .++ +|...|.++.-..-.+.+.+|. |+++++|++... ....+.++.+.+-|++|- +..++++||.+|.|.+|
T Consensus 277 s~v-etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 277 SYV-ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALW 353 (479)
T ss_pred HHH-HHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEe
Confidence 777 566 9999999999888888888886 999999999543 334577888899999996 45799999999999999
Q ss_pred ECCCCCcceEEee-cC-----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 608 DMDLSSKPYRVLK-CH-----------PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 608 Dl~~~~~~~~~l~-~h-----------~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
++... +|+.+.+ +| ..+|++|+..|...++|+||.+|.|++|-+... ...+.++..+.- .+
T Consensus 354 s~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g-----~r~i~~l~~ls~-~G 426 (479)
T KOG0299|consen 354 SLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG-----LRAINLLYSLSL-VG 426 (479)
T ss_pred eeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC-----ccccceeeeccc-cc
Confidence 99866 6665443 23 237999999999999999999999999954321 123344555552 23
Q ss_pred CCCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 005235 676 SNGRGVMDCKFHPRQPWLFTA-GADSVI 702 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~-g~Dg~I 702 (707)
. |++++|+++|.+|++| |....+
T Consensus 427 f----VNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 427 F----VNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred E----EEEEEEccCCCEEEEeccccccc
Confidence 3 9999999999977665 444433
No 97
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2e-20 Score=195.94 Aligned_cols=304 Identities=15% Similarity=0.193 Sum_probs=235.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc---hhcccccceeeec
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE---EEQRRVKDLLHVE 465 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~---~~~~~~~~v~~~~ 465 (707)
-++||..+|+|.||+..+.+..+.... .+.|.+++...+| .|++++.|..|..||-.-... .+......+..+.
T Consensus 259 dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 259 DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 478999999999999988776665544 8999999999999 799999999999999322111 1111112222222
Q ss_pred cc---ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235 466 TP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP 542 (707)
Q Consensus 466 ~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V 542 (707)
-. +..|...+.|..=++.+.......+|......++.+|+.+.|+|++.|+ .+++|+ ..+.. .......++
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk---~v~lW~--~~k~~-wt~~~~d~~ 410 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK---HVRLWN--DHKLE-WTKIIEDPA 410 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc---eEEEcc--CCcee-EEEEecCce
Confidence 11 5566666777777777777777889999999999999999999999998 999999 33332 333567789
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK- 620 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~- 620 (707)
.|+.|||.| .+++|+ .|...+.|..++.++..-.. ..++++++|+|+|.+||+||.|+.|+||-++.+...+....
T Consensus 411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred eEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 999999999 888888 89999999999777655554 68899999999999999999999999999988766666554
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC------------------------------------------
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL------------------------------------------ 658 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl------------------------------------------ 658 (707)
.|..+|+.+.||+|+++|.+-|-|-.|..|....-.+.
T Consensus 489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~ 568 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS 568 (626)
T ss_pred ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence 34478999999999999999999988988832200000
Q ss_pred ---------CCCCcc---cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 659 ---------NQNPLI---VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 659 ---------~~~~~~---~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+.|+. .+...+.+|+.. |.+++|......|.+.+.|..|..|+|
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~----vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSH----VTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCceEEEEccccCCCcccceeeccccce----eEEEEEeeCCceEEecCCCceEEEEEe
Confidence 011111 133455678777 999999998889988889999999986
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=7.7e-23 Score=202.55 Aligned_cols=228 Identities=16% Similarity=0.232 Sum_probs=185.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
.+|++|+.|++|+++|..... ..+.|+...+|.++.|+|.|+ .|+++..-..+++||+.+....+...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan-------- 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN-------- 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC--------
Confidence 599999999999999987543 334455578999999999995 66666677799999987753211100
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--cc-CCCe
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL-HGLP 542 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~-~~~V 542 (707)
.-.+|.+.|++|.+++.|+..++++.|| .|+|||--.+++. .+| .| ...|
T Consensus 256 -----------------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG---~IklwDGVS~rCv-~t~~~AH~gsev 308 (430)
T KOG0640|consen 256 -----------------------PDDQHTGAITQVRYSSTGSLYVTASKDG---AIKLWDGVSNRCV-RTIGNAHGGSEV 308 (430)
T ss_pred -----------------------cccccccceeEEEecCCccEEEEeccCC---cEEeeccccHHHH-HHHHhhcCCcee
Confidence 1237999999999999999999999999 9999999999998 888 44 4578
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcc
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKP 615 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~ 615 (707)
.++.|..+++++++++ |..|++|.+.++++++.+.+.. ..-+...|+...++++.-.. .+.++-||.++..+.
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 8999999999999988 9999999999999999987642 11244557777778776543 467999999988655
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
-..--+|+++++.+.-||.++-|++||+|-.+++|.-
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 5555689999999999999999999999999999953
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=217.44 Aligned_cols=305 Identities=12% Similarity=0.171 Sum_probs=235.2
Q ss_pred ccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--eEEEEEec
Q 005235 339 YENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--RCLRVLEI 416 (707)
Q Consensus 339 ~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--~~l~~l~~ 416 (707)
|...++.|...+.|+.+|-.+ ..++++|.|-+|++|++..+ -|+.++..
T Consensus 65 ~~asme~HsDWVNDiiL~~~~-----------------------------~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNG-----------------------------KTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCC-----------------------------CceEEecCCceEEEeecccCcchhHhhhhc
Confidence 455556666677898888543 47999999999999999887 57766665
Q ss_pred -CCcEEEEEE-ccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE-ecc
Q 005235 417 -GEAIQYVAW-NPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR-LRH 493 (707)
Q Consensus 417 -~~~V~~v~~-spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~-~~h 493 (707)
.+.|.|+++ .++. ..++++|.|+.|.|||+.++...+......+.. ..+ .++
T Consensus 116 H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~------------------------~sl~sG~ 170 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTV------------------------NSLGSGP 170 (735)
T ss_pred ccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhcccccc------------------------ccCCCCC
Confidence 899999999 6665 367778899999999999874422211111110 112 278
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
...|++++-++.|..|++|+..+ .+++||..+.... ..+ +|...|.++..+++|..+++++ ||+|++|||..++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek---~lr~wDprt~~ki-mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEK---DLRLWDPRTCKKI-MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred ccceeeeecCCcceEEEecCccc---ceEEeccccccce-eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 89999999999999999999877 9999999999887 777 9999999999999999999988 9999999999999
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
++.++..|...|.++..+|+-.++.+|+.||.|..=|+++..+....++ ...+|..+..+...+-+-+++.|+.|+-|-
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999999999999999999999987644444443 456777888776555557788899999996
Q ss_pred cccccCCCCC------------Ccc----cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 652 GMVYSDLNQN------------PLI----VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 652 ~~~~~Dl~~~------------~~~----~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
......+.-+ +.. .|-.++.| +.+|...+.-.+.+.++|-.+.|.+.+||+
T Consensus 326 ~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-----g~ai~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 326 LEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG-----GAAIKKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred CccccccccCCCCCcccccCCCccccccCCCceeccC-----chhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence 5432211110 000 01112222 223666677778899999999999999996
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.4e-21 Score=190.67 Aligned_cols=246 Identities=13% Similarity=0.164 Sum_probs=197.1
Q ss_pred EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235 413 VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL 491 (707)
Q Consensus 413 ~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~ 491 (707)
.+.. .+.|++|.|+++|+ .+++++.|..++|||...+... ..+.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~----------------------------------~ti~ 53 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQV----------------------------------KTIN 53 (311)
T ss_pred ccccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCcee----------------------------------eEee
Confidence 3444 78899999999994 7778888889999997765321 1233
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~ 569 (707)
.+...|..++|......++.++. ..+.+|+.-++.+.+.. +-| +|...|.+++.+|-+..+++++ |++|++||++.
T Consensus 54 skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred cccccccEEEEecCCceEEEccC-CCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence 45556777888766666666665 22459999999999998 889 9999999999999999999988 99999999998
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-CcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCC
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS-SKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~-~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg 645 (707)
.++...+..... ..++|+|.|-++|+|.....|++||++.- ..|..++... ....+.+.|||+|++|+.++..+
T Consensus 132 ~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 132 KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 777666654433 35789999999999998889999999874 4677777644 56789999999999999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+++.|+ ..+.. +..+.++...... -.+.+|+||++++++|+.||+|.+|++
T Consensus 210 ~~~~lDA------f~G~~---~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 210 FIYLLDA------FDGTV---KSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred cEEEEEc------cCCcE---eeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 9999954 34433 6677777665222 367899999999999999999999985
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.5e-21 Score=210.75 Aligned_cols=302 Identities=14% Similarity=0.152 Sum_probs=230.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCC----CeEEEEEecCCcEEEEEEcc------------CCCccEEEEEeCCeEEEEECCCC
Q 005235 387 ACYLEYKGSTDGTVRIWEVES----GRCLRVLEIGEAIQYVAWNP------------LPELPVLAVSVGQDVLILNTGLG 450 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~t----g~~l~~l~~~~~V~~v~~sp------------dg~~~lla~s~d~~V~lwd~~~~ 450 (707)
....+..--.|..++|||+.. |++-..+.+...|+.|.--| .+ .+++++.|++|++|++..+
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc--ceeEecCCCcEEEeecccc
Confidence 344555668899999999975 56666666677777776544 34 6899999999999998763
Q ss_pred Cchhc----------------cccc-----------------------ceeeeccc-----ccccCCCCcEEEEecCCcc
Q 005235 451 NEEEQ----------------RRVK-----------------------DLLHVETP-----TAPDDNMASIVSWLQHDKL 486 (707)
Q Consensus 451 ~~~~~----------------~~~~-----------------------~v~~~~~~-----~~~~~~d~~i~iW~~~~~~ 486 (707)
..... ..+. .+.+++.+ +++|...|+++++++..-.
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 11000 0000 01111111 7889999999999998654
Q ss_pred c-eEEeccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC--CEEEEEe-
Q 005235 487 D-GIRLRHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR--SIFFVST- 558 (707)
Q Consensus 487 ~-~~~~~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~--~~l~v~s- 558 (707)
. +....|...|.|+.|+. ..++||+++.|. .|.|+|+...-....++ +|...|++|.|.-+| ..+++++
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR---lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDR---LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCc---eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 4 44778999999999986 347899999977 99999998776654677 999999999998876 4556655
Q ss_pred CCeEEEEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---cCCCCEEEEE
Q 005235 559 KKNIRVYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---CHPKDITNVA 630 (707)
Q Consensus 559 dg~I~iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---~h~~~I~~va 630 (707)
|+.|.+--.++......+. .....+..|++.|...++++++.|+.|+|||+..+ +..+.|+ +|.+....|.
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEE
Confidence 7665443322211111122 12356899999999999999999999999999987 7777776 4667888999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..|.|.+||+.+.|.++.++ |..++.+ +....||... |+.+.|.+|-+.|++++.||.|.||.|
T Consensus 649 lDPSgiY~atScsdktl~~~------Df~sgEc---vA~m~GHsE~----VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFV------DFVSGEC---VAQMTGHSEA----VTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ECCCccEEEEeecCCceEEE------Eeccchh---hhhhcCcchh----eeeeeecccchhheeecCCceEEEEEC
Confidence 99999999999999999999 4555554 8889999998 999999999999999999999999975
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-21 Score=182.88 Aligned_cols=261 Identities=17% Similarity=0.203 Sum_probs=198.2
Q ss_pred eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235 409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG 488 (707)
Q Consensus 409 ~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~ 488 (707)
.++..+.....|.+|+|+|.|. ..++++...+++|.....-.....+|...... ...++ .
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~p------------p~v~~-------k 83 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQP------------PSVLC-------K 83 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCC------------CeEEe-------e
Confidence 4566666688999999999993 34444455677776543321111111111000 01111 1
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee----eee-ccCCCeEEEEEeCC----CCEEEEEe-
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR----IPF-KLHGLPVSSVFHPT----RSIFFVST- 558 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----~~~-~~~~~V~~v~fspd----~~~l~v~s- 558 (707)
....|.+.|.|++|+|+|..+++|+.|. .|++.-++...++. ..| -|.+.|..++|-.+ +.+|++++
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk---~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDK---TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCc---eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 2347899999999999999999999988 89888776554431 345 78899999999643 45677765
Q ss_pred -CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--C-----CCCEEEEE
Q 005235 559 -KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--H-----PKDITNVA 630 (707)
Q Consensus 559 -dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h-----~~~I~~va 630 (707)
|..|++-|...|+....+.+|.+.|.++ ++-+|-.+++||.|.+|++||++-. .++.++.. | ..+|.+|+
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEE
Confidence 7888888999999999999999999887 3446889999999999999999876 55665531 2 36799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..|.|++|++|-.|.+..+| |+..+.. ++.+..|+.. |.++.|+|.-.+|++++.|..|++=||
T Consensus 239 vdpsgrll~sg~~dssc~ly------dirg~r~---iq~f~phsad----ir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLY------DIRGGRM---IQRFHPHSAD----IRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ECCCcceeeeccCCCceEEE------EeeCCce---eeeeCCCccc----eeEEEeCCCceEEEEecccceEEEeec
Confidence 99999999999999999999 4555543 8899999988 999999999999999999999999765
No 103
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=4.3e-22 Score=207.16 Aligned_cols=243 Identities=16% Similarity=0.228 Sum_probs=191.4
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCe--------EE--EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGR--------CL--RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTG 448 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--------~l--~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~ 448 (707)
.++-.|.+..++++++..+.|.|||..+-. |. .++.+ ...-.+|+|++.....+++++.+++|++||+.
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence 344567888899999999999999976421 11 13333 34467799999887789999999999999987
Q ss_pred CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECC
Q 005235 449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
...... . .......+.+|...|..++||+. ...|++++.|+ .+.|||++
T Consensus 209 ~~~~~~--------------------~-------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~---~L~iwD~R 258 (422)
T KOG0264|consen 209 AESKED--------------------K-------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG---KLMIWDTR 258 (422)
T ss_pred ccccCC--------------------c-------cccceEEeecCCcceehhhccccchhhheeecCCC---eEEEEEcC
Confidence 653210 0 00112246799999999999994 56788899888 99999999
Q ss_pred C--Cceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEEC
Q 005235 528 K--KLSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSR 600 (707)
Q Consensus 528 ~--~~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~ 600 (707)
+ .... ... +|.+.|.|++|+|-+ .+||+|+ |++|.+||+++ .+++.++.+|...|.+|.|+|.. ..||+++.
T Consensus 259 ~~~~~~~-~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 259 SNTSKPS-HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCc-ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 5 3333 445 899999999999965 4566677 99999999997 46788999999999999999986 57788999
Q ss_pred CCcEEEEECCCCC-------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 601 EGKLCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 601 Dg~I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
|+++.|||+..-+ .++.+..||+..|..+.|+|..+ .|+|+++|+.++||.+.
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999997422 23466779999999999999988 67899999999999653
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.6e-21 Score=192.69 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=191.4
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
..-++.++++||.|-+|+|||+.+...+..+-. .+.|+++.|.+.-. ..|++++.||.|.+|+.....
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~---------- 118 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE---------- 118 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE----------
Confidence 334567899999999999999998877766555 89999999998752 269999999999999965431
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL 541 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~ 541 (707)
....+..|.+.|+.++.||.|+.-++++.|+ .+++|++-+++.. ..+.....
T Consensus 119 ------------------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~---~lr~WNLV~Gr~a-~v~~L~~~ 170 (362)
T KOG0294|consen 119 ------------------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ---VLRTWNLVRGRVA-FVLNLKNK 170 (362)
T ss_pred ------------------------EeeeecccccccceeEecCCCceEEEEcCCc---eeeeehhhcCccc-eeeccCCc
Confidence 1224678999999999999999999999988 9999999998875 44455555
Q ss_pred eEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 542 PVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 542 V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
...|.|+|.|.+|+++..+.|-||.+.+..+...+... ..+.|+.|- ++..|++|..|+.|.+||.+.. .++..+.+
T Consensus 171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~A 247 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLA 247 (362)
T ss_pred ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeec
Confidence 56699999999999999999999999887776666544 557777775 5679999999999999999875 89999999
Q ss_pred CCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecc
Q 005235 622 HPKDITNVAF--HRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 622 h~~~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~ 653 (707)
|...|.++.+ .|.+.+|+|+|.||.|+|||+.
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred chhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 9999999985 5678899999999999999774
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.4e-22 Score=206.22 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=211.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC--Cchhcccccceeeecc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG--NEEEQRRVKDLLHVET 466 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~--~~~~~~~~~~v~~~~~ 466 (707)
+.+++|. .|.||+..+....+++.- ...|.+++|..|| ..++++...|.|+|+|..+. -..+..|+.++-...|
T Consensus 42 ~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f 118 (487)
T KOG0310|consen 42 FAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKF 118 (487)
T ss_pred eEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEe
Confidence 4444443 589999887766664443 8899999999999 34555557899999996552 2356677777777777
Q ss_pred c------ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeeecc
Q 005235 467 P------TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPFKL 538 (707)
Q Consensus 467 ~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~ 538 (707)
+ +++++.++.++.|++.+..... +.+|++.|.|.+|+|... .++||+.|| .|++||++........+.|
T Consensus 119 ~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG---KVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc---eEEEEEeccCCceeEEecC
Confidence 6 7889999999999999888753 789999999999999654 889999999 9999999988433267799
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235 539 HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
..+|..+.|-|.|..|++|+...|+|||+.+| +++..+..|...|+|+++..++..|++|+-|+.|++||+.+. +.+.
T Consensus 196 g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~ 274 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVH 274 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEE
Confidence 99999999999999999999999999999965 555556669999999999999999999999999999997655 6666
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.+. ..++|.+++.+|++..++.|-.+|.+.+-+..
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 666 46899999999999999999999988877443
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.2e-22 Score=208.72 Aligned_cols=264 Identities=13% Similarity=0.171 Sum_probs=211.9
Q ss_pred cEEEEEeCCCcEEEEeCCCC---eEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVESG---RCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg---~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
..+|||+. |.|+|||+... ..+..+.. ...|.++.+.||| +.|++++...+|.|||+......+...
T Consensus 432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikae----- 504 (705)
T KOG0639|consen 432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAE----- 504 (705)
T ss_pred ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhh-----
Confidence 47889875 67999998642 23444443 7889999999999 589999999999999987654432110
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
+..-.-.+.+++.+||.+..++++.|| .|.|||+...... +.| +|...
T Consensus 505 ---------------------------ltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~V-rqfqGhtDG 553 (705)
T KOG0639|consen 505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLV-RQFQGHTDG 553 (705)
T ss_pred ---------------------------cCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceee-ecccCCCCC
Confidence 111223467788999999999999999 9999999998888 899 99999
Q ss_pred eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
+.|+.++++|..|.+|+ |++||.||++.++.+.... ....|.++..+|.+++|++|-.++.+-|...... ....+.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlh 630 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLH 630 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc--cceeec
Confidence 99999999999999999 9999999999987665543 2366999999999999999999999998887643 345677
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
-|...|.++.|.+.|++|+|.+.|..+..|... -+.. +...+..+ .|++|..|-+.++|+||+.|.
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtP------yGas---iFqskE~S-----sVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------YGAS---IFQSKESS-----SVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCc------cccc---eeeccccC-----cceeeeeccCceEEEecCCCc
Confidence 799999999999999999999999999999432 2222 22222222 299999999999999999998
Q ss_pred cEEEEeC
Q 005235 701 VIRLYCH 707 (707)
Q Consensus 701 ~IrlWdl 707 (707)
...||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888753
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.4e-22 Score=214.57 Aligned_cols=228 Identities=16% Similarity=0.221 Sum_probs=196.7
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
+...+.+|+.|..+|.|.|||+.+.+.++.+.. ...|-+++|+.. .+.+++.++.|..+|+.......
T Consensus 225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~------- 294 (484)
T KOG0305|consen 225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVV------- 294 (484)
T ss_pred ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhh-------
Confidence 345567999999999999999999988888877 789999999944 48888899999999987653321
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG 540 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~ 540 (707)
..+.+|...|+.+.|++++.+||+|+.|+ .+.|||....... ..| .|.+
T Consensus 295 --------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN---~~~Iwd~~~~~p~-~~~~~H~a 344 (484)
T KOG0305|consen 295 --------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDN---VVFIWDGLSPEPK-FTFTEHTA 344 (484)
T ss_pred --------------------------hhhhcccceeeeeEECCCCCeeccCCCcc---ceEeccCCCcccc-EEEeccce
Confidence 01457999999999999999999999988 9999999666665 677 9999
Q ss_pred CeEEEEEeCC-CCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCCc
Q 005235 541 LPVSSVFHPT-RSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSSK 614 (707)
Q Consensus 541 ~V~~v~fspd-~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~~ 614 (707)
.|.+++|+|- ..+||+|+ |++|++||..+++.+..+..+ ..|++|.|++..+-|+++ ..++.|.||++.+. +
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~ 422 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-K 422 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-c
Confidence 9999999994 56777764 899999999999999988776 679999999999777664 45678999999876 7
Q ss_pred ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
++..+.+|...|..++++|+|..+++|+.|.++++|++-
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 889999999999999999999999999999999999543
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=8.4e-22 Score=220.91 Aligned_cols=231 Identities=17% Similarity=0.175 Sum_probs=198.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...+.+..|. ++ .+++++.+++|.+|+..++... ...+.+|.+.
T Consensus 208 ~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i---------------------------------~~~l~GH~g~ 251 (537)
T KOG0274|consen 208 DHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLI---------------------------------LTRLVGHFGG 251 (537)
T ss_pred cchhhhheee-cC--eEEecCCCceeEEeecccceEE---------------------------------EeeccCCCCC
Confidence 5678888888 44 5888889999999987654221 0126699999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|.++++...++++++|+.|. ++++||+.++.+. ..+ +|.+.|.++...+ ..+++|+ |.+|++|++.++.++.
T Consensus 252 V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg~C~-~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~ 325 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDK---TERVWDCSTGECT-HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN 325 (537)
T ss_pred ceeEEEecCCCEEEEEecCC---cEEeEecCCCcEE-EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE
Confidence 99999988889999999988 9999999999999 888 8999999988764 3556666 9999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
.+.+|..+|.++.++ +.++++|++|++|.+||+.++ ++++++.+|...|.++.+.+. ..+++|+.|++|++||
T Consensus 326 l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd--- 398 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD--- 398 (537)
T ss_pred EeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec---
Confidence 999999999999997 889999999999999999977 899999999999999988765 8999999999999995
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.+.. .++.++.+|... |..+.+ .+.+|+++++||+|++||.
T Consensus 399 ---l~~~~--~c~~tl~~h~~~----v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 399 ---LRTKR--KCIHTLQGHTSL----VSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred ---CCchh--hhhhhhcCCccc----cccccc--ccceeEeccccccEEEeec
Confidence 44442 468899999987 766655 6789999999999999984
No 109
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2.2e-21 Score=188.77 Aligned_cols=236 Identities=17% Similarity=0.202 Sum_probs=199.1
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...|.+|+|+-+| ..+++++.|+++.+|++....... - ....+|.+.
T Consensus 20 ~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~------------------------~--------~~~~gh~~s 66 (313)
T KOG1407|consen 20 VQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRK------------------------E--------LVYRGHTDS 66 (313)
T ss_pred hhcceEEEEcccC-ceeeecccCCceEEEEecchhhhh------------------------h--------hcccCCCcc
Confidence 5789999999999 589999999999999986642210 0 124589999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|-+++|+| ..+.|++++.|. .|++||++.+++. ..+..++.-.-+.|+|+|.++++++ |..|.+.|.++.+.+.
T Consensus 67 vdql~w~~~~~d~~atas~dk---~ir~wd~r~~k~~-~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDK---TIRIWDIRSGKCT-ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred hhhheeCCCCCcceEEecCCc---eEEEEEeccCcEE-EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee
Confidence 99999988 457899999877 9999999999887 6675556666789999999999998 8999999999988776
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
..+-. ..+.-++|+.++++++..+..|.|.|.....- +|+..+++|.....||.|+|+|++||+|+.|..+-+||+.
T Consensus 143 ~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~- 219 (313)
T KOG1407|consen 143 EEQFK-FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD- 219 (313)
T ss_pred hhccc-ceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChh-
Confidence 66533 56788999988888888888899999998755 8999999999999999999999999999999999999653
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
. +.|++.+.-+.-+ |..+.|+.+|++||+||.|..|-|
T Consensus 220 -----E---LiC~R~isRldwp----VRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 220 -----E---LICERCISRLDWP----VRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred -----H---hhhheeeccccCc----eEEEEeccCcceeeccCccceEEe
Confidence 2 2457778877776 999999999999999999988744
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.7e-21 Score=200.43 Aligned_cols=273 Identities=13% Similarity=0.148 Sum_probs=208.7
Q ss_pred EEEEEeCCC-cEEEEeCCCCeEEEEEecCCcE--EEE-EEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDG-TVRIWEVESGRCLRVLEIGEAI--QYV-AWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~Dg-tVrIWd~~tg~~l~~l~~~~~V--~~v-~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
++.+++.|. ++.+||+.||..+.++++.... .++ +..+ . +++++.. -..|.+|.+.......
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~-~--yllsaq~~rp~l~vw~i~k~~~~~---------- 75 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN-E--YLLSAQLKRPLLHVWEILKKDQVV---------- 75 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch-h--heeeecccCccccccccCchhhhh----------
Confidence 344455554 4999999999998888873211 111 1222 1 3444443 3356666654332110
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
...-..++|.+++-+|.|.+|+.|+-.+ .|++|.++++... ..+ +|-..|+
T Consensus 76 ------------------------q~~v~Pg~v~al~s~n~G~~l~ag~i~g---~lYlWelssG~LL-~v~~aHYQ~IT 127 (476)
T KOG0646|consen 76 ------------------------QYIVLPGPVHALASSNLGYFLLAGTISG---NLYLWELSSGILL-NVLSAHYQSIT 127 (476)
T ss_pred ------------------------hhcccccceeeeecCCCceEEEeecccC---cEEEEEeccccHH-HHHHhhcccee
Confidence 1223578899999999999999987777 9999999999988 777 9999999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCC---------CeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLK---------QRLIKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~---------~~~~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~ 611 (707)
|+.|+-|+.+|++|+ ||.|.+|.+.. -+++..+..|.-.|+.+.+.+.| .+|+++|.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 999999999999999 99999998742 36788899999999999998765 6899999999999999998
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccC----CC---CCCcccceEEeeCCCCCCCCCeeEE
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSD----LN---QNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~D----l~---~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
+ .++.++. ....+.+|+..|.++.++.|+.+|.|.+.++....- +. .-.....+..+.||.+. ..|+++
T Consensus 208 g-~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcL 283 (476)
T KOG0646|consen 208 G-VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCL 283 (476)
T ss_pred c-eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEE
Confidence 7 6666655 467899999999999999999999999986542210 00 00122346778899871 239999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 005235 685 KFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 685 ~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.+-||..|++|+.||.|+|||+
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999999999985
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=199.21 Aligned_cols=237 Identities=15% Similarity=0.162 Sum_probs=197.2
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
..+.++..+|.. ..+++++.|..+.++|..++.. +..+.+|...|
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~----------------------------------l~~~~Gh~kki 264 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQI----------------------------------LATLKGHTKKI 264 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhh----------------------------------hhhccCcceEE
Confidence 456777777763 3688888888888888655321 22467999999
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~ 575 (707)
+.+.||++...+++++.|. .|+||......+. ... .|.++|+.+..||.|.+|++++ |++..+.|++++.++..
T Consensus 265 ~~v~~~~~~~~v~~aSad~---~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADE---IIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred EEEEeccchhheeecCCcc---eEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence 9999999999999999988 9999999888776 555 9999999999999999999999 89999999999988776
Q ss_pred EeCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 576 LETG--LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 576 l~~~--~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.... .-.+++.+|||||..|.+|+.||.|+|||+..+ .....|.+|+++|.+++|+-+|-+||++++|+.|++||++
T Consensus 341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 6542 234899999999999999999999999999987 4788899999999999999999999999999999999655
Q ss_pred cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.... ++++.-... .+|.++.|.+.|.+|+.+|.|=.|+++.
T Consensus 420 ------Kl~n---~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 420 ------KLKN---FKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ------hhcc---cceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 3222 333433322 2499999999999999998887776653
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=8.2e-22 Score=204.85 Aligned_cols=260 Identities=15% Similarity=0.129 Sum_probs=203.7
Q ss_pred cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC------CccceE
Q 005235 416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH------DKLDGI 489 (707)
Q Consensus 416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~------~~~~~~ 489 (707)
+.-+|.||+++|++ .+.++++.+++|.-|++.++.... .+|... ......
T Consensus 141 H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~-----------------------~i~~~~ev~k~~~~~~k~ 196 (479)
T KOG0299|consen 141 HQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDR-----------------------YIIERDEVLKSHGNPLKE 196 (479)
T ss_pred ccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccc-----------------------cccccchhhhhccCCCCc
Confidence 36789999999998 489999999999999988874320 111110 000111
Q ss_pred E-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 490 R-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 490 ~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
. ..|...+.+++.+++|+|||+|+.|. .|.||+..+...+ ..| .|.+.|.+++|-.....|++++ |++|++|+
T Consensus 197 ~r~~h~keil~~avS~Dgkylatgg~d~---~v~Iw~~~t~ehv-~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 197 SRKGHVKEILTLAVSSDGKYLATGGRDR---HVQIWDCDTLEHV-KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ccccccceeEEEEEcCCCcEEEecCCCc---eEEEecCcccchh-hcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 1 38999999999999999999999988 9999999999988 888 9999999999998877788877 99999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
+.....+.++.+|...|.+|....-++.+-+|+.|+++++|++... ..-++.+|.+.+-|++|-.+ ..|++||++|+
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~ 349 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS 349 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCce
Confidence 9998999999999999999999888899999999999999999544 34467899999999999755 56889999999
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+|.+.....+...+...++........ ....|++++..|...++++|+.+|.||||-+
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~-~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVN-GNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccc-cccceeeeEecccCceEEecCCCCceEEEEe
Confidence 99996543222222111111111100000 0125999999999999999999999999963
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4e-21 Score=190.40 Aligned_cols=243 Identities=15% Similarity=0.127 Sum_probs=192.4
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.+|+|||.....+++++.|++|++|++....... ......|.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------------------------~ka~~~~~~P 74 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------------------------PKAQQSHDGP 74 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc--------------------------------chhhhccCCC
Confidence 68899999999654455588899999999986531110 0124478999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC--EEEEEe-CCeEEEEECCCCeE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS--IFFVST-KKNIRVYDLLKQRL 572 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~--~l~v~s-dg~I~iwDl~~~~~ 572 (707)
|.+++|+.+|..+++++.|+ .+++|||.+++. ..+ .|.++|.++.|-+... .|++|+ |.+|+.||++...+
T Consensus 75 vL~v~WsddgskVf~g~~Dk---~~k~wDL~S~Q~--~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDK---QAKLWDLASGQV--SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred eEEEEEccCCceEEeeccCC---ceEEEEccCCCe--eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 99999999999999999998 999999999966 466 9999999999988665 788999 99999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
+.++.-. ..+.++++- ...++++..++.|.+|+|+.+...++.... -.-.+++|+..++...+|.||-.|.+.|.+
T Consensus 150 v~t~~LP-eRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 150 VATLQLP-ERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred eeeeecc-ceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 9988866 557777663 568899999999999999866444333321 234589999999999899999999999997
Q ss_pred cccccCCCCCCcccceEEeeCCCCCC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 652 GMVYSDLNQNPLIVPLEILRGHTSSN-----GRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~-----~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+...+. . --.+|+-|...+ -..|++|+|||.-..|+|+|.||++.+||
T Consensus 227 id~~~~-~------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 227 IDDPNP-K------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred cCCCCc-c------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 753321 1 123555565321 23489999999999999999999999998
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=186.52 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=197.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235 386 VACYLEYKGSTDGTVRIWEVESG-----RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg-----~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
.++..|+|++.|++||||++... +|++.---.+..+.|+|+||-...++++..++++++|.......
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-------- 167 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-------- 167 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc--------
Confidence 34458999999999999998753 23322111457899999999865666666788999998543211
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH 539 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~ 539 (707)
|+..-...-||- ......|.-.|..+....++.+|++++.|. .|.+|++. ++.. ..+ ...
T Consensus 168 ----------G~~~~~~v~~D~----~~f~~kh~v~~i~iGiA~~~k~imsas~dt---~i~lw~lk-Gq~L-~~idtnq 228 (420)
T KOG2096|consen 168 ----------GSGSHHFVHIDN----LEFERKHQVDIINIGIAGNAKYIMSASLDT---KICLWDLK-GQLL-QSIDTNQ 228 (420)
T ss_pred ----------CCCCcccccccc----cccchhcccceEEEeecCCceEEEEecCCC---cEEEEecC-Ccee-eeecccc
Confidence 000011112221 112335677777888888999999999988 99999998 5554 555 555
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECC---CC-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLL---KQ-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~---~~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
..-...+.+|+|+++++++ --.|++|.+- .| ..+..|.+|...|..++|+|+...+++.|.||+++|||.+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 5667789999999999988 7889999863 22 3456788999999999999999999999999999999986
Q ss_pred CC----C--cceEEe----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 611 LS----S--KPYRVL----KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 611 ~~----~--~~~~~l----~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
-. . +.+++. ..-.+.-..++.+|.|..||.+. ..++++|......++. ++. ..|...
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~------~~e--~~h~~~---- 375 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP------ELE--DIHSTT---- 375 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccch------hHH--HhhcCc----
Confidence 32 1 112222 11223334799999999888664 4579999655433221 121 346665
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 681 VMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|.+++|+++|++++|+| |..+++.
T Consensus 376 Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 376 ISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred eeeEEecCCCcEEeeec-ceeeeee
Confidence 99999999999999998 5666664
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=7.8e-21 Score=215.68 Aligned_cols=292 Identities=19% Similarity=0.244 Sum_probs=217.9
Q ss_pred CCCCCCCcc------ccCCCCCccCChhhh-----hhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEc
Q 005235 288 KPKLPGHEE------SYNPSLEYIPTQEEL-----NSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLC 356 (707)
Q Consensus 288 k~~lpgh~~------synP~ge~L~s~~~~-----~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~ 356 (707)
|.++-+|.+ .-+|+|.-++|++.. ..|.... +++.....--.+|..-.++..|+.....+.|+
T Consensus 5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~------vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP------VLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred cccccccCCeeEEEEEecCCceeEecCCccccccceeecccc------ccchhhhhhcccchhheeeccccCceeEEEEC
Confidence 456667766 478999999997753 3666322 11111111111333333344444444445555
Q ss_pred CccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC-------C-----------eEEEEEec-C
Q 005235 357 PRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES-------G-----------RCLRVLEI-G 417 (707)
Q Consensus 357 pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-------g-----------~~l~~l~~-~ 417 (707)
|+ +.+||+||+|+.|.||+-.. | +++..+.+ .
T Consensus 79 ~d-----------------------------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~ 129 (942)
T KOG0973|consen 79 PD-----------------------------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD 129 (942)
T ss_pred CC-----------------------------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC
Confidence 54 56999999999999999772 1 24555555 8
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
+.|..|+|+|++ ..+++++.|++|.||+..+... ...+.+|.+.|
T Consensus 130 ~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~----------------------------------~~vl~~H~s~V 174 (942)
T KOG0973|consen 130 SDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL----------------------------------LKVLRGHQSLV 174 (942)
T ss_pred CccceeccCCCc-cEEEEecccceEEEEcccccee----------------------------------eeeeecccccc
Confidence 899999999998 5788889999999999776521 22467999999
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee---eeee---ccCCCeEEEEEeCCCCEEEEEe--C---CeEEEEE
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH---RIPF---KLHGLPVSSVFHPTRSIFFVST--K---KNIRVYD 566 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~---~~~~---~~~~~V~~v~fspd~~~l~v~s--d---g~I~iwD 566 (707)
..++|.|-|+|||+-+.|. +|+||+....... ..+| ........+.|+|||.+|++.. . .++.|.+
T Consensus 175 KGvs~DP~Gky~ASqsdDr---tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDR---TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred cceEECCccCeeeeecCCc---eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 9999999999999999988 9999997775444 1334 2344678899999999999864 2 5788888
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCC-------------CC----EEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEE
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPA-------------GD----NLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITN 628 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spd-------------g~----~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~ 628 (707)
-.+-+.-..|.+|.+++.+++|+|. ++ .+|+||.|+.|.||..... +|+... .-....|..
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKSIVD 330 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCceee
Confidence 8777888899999999999999982 12 6789999999999998765 555333 233578999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
++|+|||-.|..||.||+|.++++.
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcc
Confidence 9999999999999999999999875
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-21 Score=185.82 Aligned_cols=245 Identities=19% Similarity=0.187 Sum_probs=186.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|..+...--| .+|+++++|++|+|+....... ......+.+|.++
T Consensus 11 ~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-------------------------------s~ll~~L~Gh~GP 58 (299)
T KOG1332|consen 11 EDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-------------------------------SKLLAELTGHSGP 58 (299)
T ss_pred hhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-------------------------------ceeeeEecCCCCC
Confidence 3445555544445 4688888999999888765422 0122347799999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235 497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~ 569 (707)
|..++|.. -|..||+++.|| .|.||.-..++-.. ..+ .|.+.|++++|.|. |..|++++ ||.|.|.+...
T Consensus 59 Vwqv~wahPk~G~iLAScsYDg---kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDG---KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred eeEEeecccccCcEeeEeecCc---eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 99999965 799999999999 99999998886541 233 88999999999885 56778877 99999998875
Q ss_pred C---eEEEEEeCCCCCeEEEEEcCC---C-----------CEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEE
Q 005235 570 Q---RLIKKLETGLKEVSSIAIHPA---G-----------DNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAF 631 (707)
Q Consensus 570 ~---~~~~~l~~~~~~I~sl~~spd---g-----------~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vaf 631 (707)
. ...+....|.-.|++++|.|. | ..|++|+.|..|+||+.+.+. ..-++|.+|...|+.|+|
T Consensus 136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW 215 (299)
T ss_pred CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence 4 233445678888999999986 4 569999999999999998753 334569999999999999
Q ss_pred cCCC----CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 632 HRSY----PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 632 spdg----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|.- ..|||||.||+|.||.... +..+ -...++.. .... +..+.||+.|..|+.++.|+.|.+|.
T Consensus 216 aP~~gl~~s~iAS~SqDg~viIwt~~~--e~e~-wk~tll~~---f~~~----~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 216 APSVGLPKSTIASCSQDGTVIIWTKDE--EYEP-WKKTLLEE---FPDV----VWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccCCCceeeEEecCCCcEEEEEecC--ccCc-cccccccc---CCcc----eEEEEEeccccEEEEecCCcEEEEEE
Confidence 9964 3899999999999996531 1111 11112333 3333 99999999999999999999999994
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=207.12 Aligned_cols=257 Identities=16% Similarity=0.177 Sum_probs=203.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC-eEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 387 ACYLEYKGSTDGTVRIWEVESG-RCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg-~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+.++++++.||.|++|+...- ..-.++. .+..|.+++-..+ .+++++.+++|.+|....+...
T Consensus 24 ~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~~~----------- 89 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGEED----------- 89 (933)
T ss_pred CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCCcc-----------
Confidence 3469999999999999998765 4444555 4777888776655 5999999999999998776331
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
.++....-++.+++|+.+|+++|.|+.|- .|++-++...... ..+ +|.++|.
T Consensus 90 -----------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~-~~lrgh~apVl 142 (933)
T KOG1274|consen 90 -----------------------TILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQE-KVLRGHDAPVL 142 (933)
T ss_pred -----------------------ceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchh-eeecccCCcee
Confidence 13445677899999999999999999988 9999999888777 777 9999999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
++.|+|.+.+|++++ ||.|++||+.++.+.+++.+- ...++.++|||+|..|++.+.|+.|.+|+.....
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we- 221 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE- 221 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-
Confidence 999999999999988 999999999999877766531 2446778999999999999999999999998874
Q ss_pred ceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 615 PYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 615 ~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
+...|+ .+...+..++|+|.|.+||+++.||.|.|||..+. .-|.. ...|.+++|.|+.+-
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---------------~~~~~--~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---------------ERHEF--KRAVCCEAWKPNANA 284 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---------------hhccc--cceeEEEecCCCCCe
Confidence 344443 23444999999999999999999999999976421 11211 123999999999887
Q ss_pred EEEEeCCCcE
Q 005235 693 LFTAGADSVI 702 (707)
Q Consensus 693 L~s~g~Dg~I 702 (707)
|-.-..-|+.
T Consensus 285 it~~~~~g~~ 294 (933)
T KOG1274|consen 285 ITLITALGTL 294 (933)
T ss_pred eEEEeecccc
Confidence 6444444443
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.6e-20 Score=183.82 Aligned_cols=231 Identities=17% Similarity=0.254 Sum_probs=187.4
Q ss_pred cccccceeeeccc---ccccCCCCcEEEEecCCc-cceEEeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCC
Q 005235 455 QRRVKDLLHVETP---TAPDDNMASIVSWLQHDK-LDGIRLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSK 528 (707)
Q Consensus 455 ~~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~-~~~~~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~ 528 (707)
..|...+.+++.+ +++|++|.+|.+||+... +.+.+..|.+.|+++.|.+.-. .|++|+.|| .|.+|+...
T Consensus 40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG---~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG---HIIIWRVGS 116 (362)
T ss_pred cccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC---cEEEEEcCC
Confidence 4566667666666 899999999999999855 4566889999999999988765 899999999 999999999
Q ss_pred Cceeeeee-ccCCCeEEEEEeCCCCEEEE-EeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235 529 KLSHRIPF-KLHGLPVSSVFHPTRSIFFV-STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW 606 (707)
Q Consensus 529 ~~~~~~~~-~~~~~V~~v~fspd~~~l~v-~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v 606 (707)
..+. ..+ .|.+.|+.++.||.+++.++ ++|+.+++|||..|+.-..+.-. ...+.+.|+|.|.++++++.+ .|-+
T Consensus 117 W~~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 117 WELL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred eEEe-eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-EEEE
Confidence 9877 888 99999999999999998665 45999999999998776665543 334569999999999888775 6899
Q ss_pred EECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235 607 FDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF 686 (707)
Q Consensus 607 wDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f 686 (707)
|.+++. ..+..+.. ...+.++.|- ++..|++|++|+.|.+||.. . ..|+..+.+|... |-++.+
T Consensus 194 ~q~d~A-~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d------s---~~~~~~~~AH~~R----VK~i~~ 257 (362)
T KOG0294|consen 194 YQLDNA-SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTD------S---DTPLTEFLAHENR----VKDIAS 257 (362)
T ss_pred EecccH-hHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccC------C---Cccceeeecchhh----eeeeEE
Confidence 999865 44444432 2446666664 45678899999999999643 2 3468899999998 999885
Q ss_pred --cCCCCEEEEEeCCCcEEEEeC
Q 005235 687 --HPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 687 --spdg~~L~s~g~Dg~IrlWdl 707 (707)
.|++.+|+|+|+||.|++||+
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred EecCCceEEEEeccCceEEEEEc
Confidence 567889999999999999985
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=203.08 Aligned_cols=257 Identities=18% Similarity=0.224 Sum_probs=210.6
Q ss_pred EEEEeCCCcEEEEeCCCCe---EEEE--E---------------------------------ecCCcEEEEEEccCCCcc
Q 005235 391 EYKGSTDGTVRIWEVESGR---CLRV--L---------------------------------EIGEAIQYVAWNPLPELP 432 (707)
Q Consensus 391 l~sgs~DgtVrIWd~~tg~---~l~~--l---------------------------------~~~~~V~~v~~spdg~~~ 432 (707)
+.|+|.|+|||+|++..+. ..+. + .....|.+|+.+|+|+ +
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-h 473 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-H 473 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-e
Confidence 8899999999999987531 1100 0 0034589999999994 7
Q ss_pred EEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc--------ccccCCCCcEEEEecCCccc--eEEeccCCCeEEE
Q 005235 433 VLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP--------TAPDDNMASIVSWLQHDKLD--GIRLRHFKMVSSV 500 (707)
Q Consensus 433 lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~--------~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~V~~v 500 (707)
|+++...|+++||++...+. .+..|...++++.|+ +++++.+..|.++|...... +.+-+|...|++|
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 88888899999999987654 567889999999887 89999999999999875543 4477999999999
Q ss_pred EEcCCC--CEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 501 EWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 501 ~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
.|...| ..+++++.|. .|.+--..+.... ..| -.+..+..++..|+.+++++++ |+.|+|||+..++
T Consensus 554 KFa~~gln~~MiscGADk---simFr~~qk~~~g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADK---SIMFRVNQKASSG-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred EEeecCCceEEEeccCch---hhheehhccccCc-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 998877 6788888876 5443333322222 333 2246788999999999999988 9999999999999
Q ss_pred EEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 572 LIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 572 ~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
.++.|++ |.+..-.+...|.|.||++.+.|+++.++|.-++ .++.++.+|...|+.+.|.+|-+.|++.+.||.|.
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 9999986 4456778899999999999999999999999987 88999999999999999999999999999999999
Q ss_pred EEecc
Q 005235 649 VFHGM 653 (707)
Q Consensus 649 Vwd~~ 653 (707)
||.+.
T Consensus 709 vW~lp 713 (1080)
T KOG1408|consen 709 VWKLP 713 (1080)
T ss_pred EEECc
Confidence 99653
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.6e-20 Score=183.28 Aligned_cols=251 Identities=18% Similarity=0.253 Sum_probs=188.3
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+-|+++.|.+-| +++++++.|++|.||+...... .|... .....|.+.
T Consensus 13 ~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~--------------------------~W~~T----s~Wrah~~S 61 (361)
T KOG2445|consen 13 KDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG--------------------------TWSCT----SSWRAHDGS 61 (361)
T ss_pred cceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC--------------------------ceEEe----eeEEecCCc
Confidence 4568999999999 5899999999999999644321 12111 124579999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC-------cee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeE
Q 005235 497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK-------LSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNI 562 (707)
Q Consensus 497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I 562 (707)
|..|.|.+ -|+.+|+++.|+ ++.||.-... +-. ...+ ...+.|+.|.|.|. |-.|++++ ||.|
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Dr---tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDR---TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred EEEEEecCccccceEEEEecCC---ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 99999955 589999999988 9999986211 111 1344 77889999999995 55677776 9999
Q ss_pred EEEECCCC------eEEEEEe-------CCCCCeEEEEEcCCC---CEEEEEECC-----CcEEEEECCCCCc---ceEE
Q 005235 563 RVYDLLKQ------RLIKKLE-------TGLKEVSSIAIHPAG---DNLIVGSRE-----GKLCWFDMDLSSK---PYRV 618 (707)
Q Consensus 563 ~iwDl~~~------~~~~~l~-------~~~~~I~sl~~spdg---~~L~sGs~D-----g~I~vwDl~~~~~---~~~~ 618 (707)
|||+.-.- .+...++ .+.....|+.|+|.. .+||+|+.+ +.+.||......+ .+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 99987542 2222222 344667899999753 678888876 5789998776542 3446
Q ss_pred eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEeccc-----------ccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235 619 LKCHPKDITNVAFHRS----YPLFASCSDDCTAYVFHGMV-----------YSDLNQNPLIVPLEILRGHTSSNGRGVMD 683 (707)
Q Consensus 619 l~~h~~~I~~vafspd----g~llaSgs~Dg~I~Vwd~~~-----------~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~ 683 (707)
|.+|+.+|++++|.|. +.+||+++.|| |+||++.+ ..+.+..-.+..+..+.+|... |..
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~----VWr 293 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE----VWR 293 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc----eEE
Confidence 7799999999999995 45999999999 99999873 1222222233445667889887 999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q 005235 684 CKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 684 l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+.|.-.|..|+|.|.||+||+|.
T Consensus 294 v~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEEeeeeeEEeecCCCceeeehh
Confidence 99999999999999999999994
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=187.34 Aligned_cols=260 Identities=18% Similarity=0.205 Sum_probs=209.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
.+++.-.++++. .+.++.+.+ .+.|+.|+-..... .+-+++.|.+.+||.++++.+.
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL--------------- 183 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACL--------------- 183 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccce---------------
Confidence 455556666643 234445555 67788887766552 5556677888888887766332
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC------CC--------------
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL------SK-------------- 528 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl------~~-------------- 528 (707)
....+|.+.|++|.||+.+.++++++.|+ +..||.. ..
T Consensus 184 -------------------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~---taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 184 -------------------ATYTGHTGSVNSIKFHNSGLLLLTASGDE---TAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred -------------------eeecccccceeeEEeccccceEEEccCCc---chHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 24669999999999999999999999988 8888871 11
Q ss_pred ----------------Cceee---eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 005235 529 ----------------KLSHR---IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIA 587 (707)
Q Consensus 529 ----------------~~~~~---~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~ 587 (707)
+.... ..| +|.+.|.+..|-..|..+++++ |++..+||+.++.++..|.+|....+.++
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 00111 233 7788899999999999999999 99999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235 588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL 667 (707)
Q Consensus 588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl 667 (707)
-||..+++++.|.|.+.++||++..-..+..|++|+..|+++.|..+.+ +++||+|.+|+|||++ ... .|+
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLr------NMR--spl 392 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLR------NMR--SPL 392 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeec------ccc--Ccc
Confidence 9999999999999999999999976667889999999999999998765 7899999999999654 322 257
Q ss_pred EEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 668 EILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 668 ~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+++.... ++.++.+..++.|+.--.+..||||||
T Consensus 393 ATIRtdS~-----~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 393 ATIRTDSP-----ANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeeecCCc-----cceeEeecCCceEEeccCCceEEEEec
Confidence 77776654 899999999999999999999999986
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=9.9e-21 Score=198.62 Aligned_cols=208 Identities=15% Similarity=0.198 Sum_probs=164.6
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.+.+|+..|.++++.|.|..|++|+.|- .|++||+.........| .....|.+++|++.|..|++.+ ....
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccc---eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4668899999999999999999999998 99999998654331223 3356799999999998888776 7889
Q ss_pred EEEECCCCeEEEE------------EeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEee-----cCCC
Q 005235 563 RVYDLLKQRLIKK------------LETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPK 624 (707)
Q Consensus 563 ~iwDl~~~~~~~~------------l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~ 624 (707)
+|+|-.....+.. -++|...++|.+|||.. ..++++++||++++||+.......+++. +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999654333322 24677889999999986 5789999999999999987655555554 2234
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
+++.++|+|+|++||+|+.||+|++|+.. ....++. ...-..|.. +.+|++|+||++|++|+|-|.|++++|
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~---~~~v~p~---~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKG---SRTVRPV---MKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecC---Ccccccc---eEeeeccCC--CCceeEEEeccccchhhhccCCCceee
Confidence 78999999999999999999999999643 2222332 344456654 245999999999999999999999999
Q ss_pred EeC
Q 005235 705 YCH 707 (707)
Q Consensus 705 Wdl 707 (707)
|||
T Consensus 391 WDL 393 (641)
T KOG0772|consen 391 WDL 393 (641)
T ss_pred eec
Confidence 997
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.3e-20 Score=184.55 Aligned_cols=273 Identities=18% Similarity=0.273 Sum_probs=203.4
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
-|+..+.+++.|..||.|.|||+.|.+.-+.+.. ..+|.|++||++| +.|++++.|..|.+||+..|...
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l-------- 100 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL-------- 100 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce--------
Confidence 4899999999999999999999999887777766 7899999999999 68999999999999998776421
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec----
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK---- 537 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~---- 537 (707)
..+...++|..+.|||.....+.++.-.. .-.+-+++.......+..
T Consensus 101 ---------------------------~rirf~spv~~~q~hp~k~n~~va~~~~~--sp~vi~~s~~~h~~Lp~d~d~d 151 (405)
T KOG1273|consen 101 ---------------------------KRIRFDSPVWGAQWHPRKRNKCVATIMEE--SPVVIDFSDPKHSVLPKDDDGD 151 (405)
T ss_pred ---------------------------eEEEccCccceeeeccccCCeEEEEEecC--CcEEEEecCCceeeccCCCccc
Confidence 23456889999999995543333332111 233334433222112221
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-- 613 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-- 613 (707)
......+..|++.|+++++|+ .|.+.+||..+.+++..+.-.. ..|.++.|+..|+.|++.+.|+.|+.|++..-.
T Consensus 152 ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 152 LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 122333456999999999999 7999999999999998887665 779999999999999999999999999986210
Q ss_pred ------cceEEeec--CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 614 ------KPYRVLKC--HPKDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 614 ------~~~~~l~~--h~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
.+.+.++. ....-.+++||.+|.+++.++. -..++|| .-..+.+ ++.|.|..+. -..++
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW------E~~~GsL---VKILhG~kgE---~l~DV 299 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW------EKSIGSL---VKILHGTKGE---ELLDV 299 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEE------ecCCcce---eeeecCCchh---heeec
Confidence 11111111 1223457899999998887774 3579999 4344444 8889888743 28899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 005235 685 KFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 685 ~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|||-.+.|++- +.|+|++|.
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred ccccceeeeeec-cCCceEEEE
Confidence 999999999998 789999996
No 124
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=197.27 Aligned_cols=240 Identities=12% Similarity=0.132 Sum_probs=196.0
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|+.+.|-++.+ .|++++.|..|.+|++...... ....+.+..+.
T Consensus 175 ~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~--------------------------------~~~tLaGs~g~ 221 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSE--------------------------------LISTLAGSLGN 221 (459)
T ss_pred ccccceeEEccCcc-hhhhcchhhhhhhhhcccchhh--------------------------------hhhhhhccCCC
Confidence 67889999999963 7999999999999997654211 11234567788
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|+.+.|.+++.++++.+.|+ .+++|++...+.. .+| +|...|+++.|.-....+++|+ |++|++||+.+..+.+
T Consensus 222 it~~d~d~~~~~~iAas~d~---~~r~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDK---NLRLWNVDSLRLR-HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred cceeeecCCCceEEeecCCC---ceeeeeccchhhh-hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 99999999999999999988 9999999999988 889 9999999999988777677777 9999999999999998
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
++... ..+..|+.+ +..+++|..|++|++||.+.. .+......+. .|+++..++++..|.+++.|.++.+.|++
T Consensus 298 t~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR- 371 (459)
T KOG0288|consen 298 TVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR- 371 (459)
T ss_pred ccccc-ccccceEec--ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc-
Confidence 87755 445666665 668899999999999999977 6677777665 89999999999999999999999999554
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.... ..+.......+.-++.+.|||++.|+++||.||.|+||++
T Consensus 372 -----t~eI~---~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 372 -----TKEIR---QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -----cccEE---EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 44432 2232222111223889999999999999999999999985
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.4e-20 Score=197.58 Aligned_cols=279 Identities=17% Similarity=0.185 Sum_probs=203.3
Q ss_pred CcccCCCCcEEEEEeCCCcEEEEeCCCCeE------EEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235 381 LKPYPVACYLEYKGSTDGTVRIWEVESGRC------LRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453 (707)
Q Consensus 381 l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~------l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~ 453 (707)
..+.|....+||.+..||.|.++|...-.. ++.+. +...|..+.|.| |+..|++++.|.++++||+......
T Consensus 57 Fs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 57 FSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred ccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceee
Confidence 334567778999999999999999764321 12222 278999999999 6678999999999999998765321
Q ss_pred hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
- .....+|.+.|.+++|++. ...|++|+.|| .|.|||++-....
T Consensus 136 G--------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg---~illWD~R~n~~d 180 (720)
T KOG0321|consen 136 G--------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDG---EILLWDCRCNGVD 180 (720)
T ss_pred c--------------------------------ceeecccccccchhhhccCCCcceeeccCCC---cEEEEEEeccchh
Confidence 0 0136699999999999995 46899999999 9999998643200
Q ss_pred -------------------eeee--------ccCCCeEE---EEEeCCCCEEEEEe--CCeEEEEECCCCeEEEE-----
Q 005235 533 -------------------RIPF--------KLHGLPVS---SVFHPTRSIFFVST--KKNIRVYDLLKQRLIKK----- 575 (707)
Q Consensus 533 -------------------~~~~--------~~~~~V~~---v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~----- 575 (707)
..++ .+...|.+ +.+..|...|++++ |+.|+||||++......
T Consensus 181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc
Confidence 0011 12334444 55666777888876 99999999998643322
Q ss_pred ---EeCC---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCC--EEEEEEcCCCCEEEEEeCCCc
Q 005235 576 ---LETG---LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKD--ITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 576 ---l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~--I~~vafspdg~llaSgs~Dg~ 646 (707)
+..+ .-.+.++.....|.+|++.+.|+.|+.|++.... .|+..+.++... -..-..+|++.++++|+.|..
T Consensus 261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 2223 2347888888899999999999999999997642 455555544321 122346899999999999999
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl 707 (707)
.++|.+. .. ..+...+.||... |++++|.|..- -++|++.|.+++||+|
T Consensus 341 ayiw~vs------~~--e~~~~~l~Ght~e----Vt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 341 AYIWVVS------SP--EAPPALLLGHTRE----VTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred eeeeeec------Cc--cCChhhhhCcceE----EEEEeeccccCCCceeeccCcceEEEec
Confidence 9999653 22 1346678999988 99999987432 3677799999999986
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=205.23 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=202.0
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----hccccc-----ceeeeccc------ccccCCCCcEEEEe
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE----EQRRVK-----DLLHVETP------TAPDDNMASIVSWL 481 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~----~~~~~~-----~v~~~~~~------~~~~~~d~~i~iW~ 481 (707)
....++|..+++-. .++++ ....+.||.+...... +..... .+..+.+. +++++..|.|.+|+
T Consensus 39 k~~~nAIs~nr~~~-qiv~A-Grs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDIN-QIVVA-GRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcc-eeEEe-cccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 45667777777763 34433 3445666665543221 110111 11122222 88999999999999
Q ss_pred cCC----ccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EE
Q 005235 482 QHD----KLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IF 554 (707)
Q Consensus 482 ~~~----~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l 554 (707)
+.. +....+..|...+.++.||+. ..+|++|+.|| .|++||++..... .+| .....|..|+|+|.-. .|
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg---~vK~~DlR~~~S~-~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDG---TVKCWDLRSKKSK-STFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCc---eEEEEeeeccccc-ccccccchhhhceeeccCCCceE
Confidence 975 222346789999999999984 56889999999 9999999998887 777 7778999999999644 45
Q ss_pred EEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEE
Q 005235 555 FVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAF 631 (707)
Q Consensus 555 ~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vaf 631 (707)
+++. .|.+++||++.. ++..++..|.++|.|+.|||++.+||+|+.|+.|+|||+..+. .+..++. -..+|..|.|
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeee
Confidence 5555 599999999864 6788899999999999999999999999999999999998542 3333333 2478999999
Q ss_pred cCCCC-EEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEE
Q 005235 632 HRSYP-LFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIR 703 (707)
Q Consensus 632 spdg~-llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~Ir 703 (707)
-|..+ .||+|+ .|-.|+|||++ . ...|..++..|+.. |+.++|-. |...|.+++.||+|.
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvr------R--PYIP~~t~~eH~~~----vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVR------R--PYIPYATFLEHTDS----VTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccCccchhhhhhccccceEEEEeec------c--ccccceeeeccCcc----ccceeccCCCceeeEeecCccHHH
Confidence 99876 677777 67899999654 2 23478899999998 99999965 445789999999874
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=9.7e-21 Score=197.77 Aligned_cols=248 Identities=17% Similarity=0.193 Sum_probs=196.4
Q ss_pred eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235 409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG 488 (707)
Q Consensus 409 ~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~ 488 (707)
+.+.++.+++-|.++++|... ..+-.+.-|.|+|||+....... .+...
T Consensus 411 rq~~tL~HGEvVcAvtIS~~t--rhVyTgGkgcVKVWdis~pg~k~---------------------PvsqL-------- 459 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISQPGNKS---------------------PVSQL-------- 459 (705)
T ss_pred HhhhhhccCcEEEEEEecCCc--ceeEecCCCeEEEeeccCCCCCC---------------------ccccc--------
Confidence 455667778888999998877 45555666789999976531110 00000
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY 565 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw 565 (707)
........|.++.++|+|+.|++|+.-. +|.|||+....... ..+ ...-.+++++.+||.+..|++. ||.|.||
T Consensus 460 dcl~rdnyiRSckL~pdgrtLivGGeas---tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 460 DCLNRDNYIRSCKLLPDGRTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred cccCcccceeeeEecCCCceEEeccccc---eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 1223456789999999999999999866 99999998765431 222 3334677899999999988776 9999999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
||..+.+++.|++|...++||+++++|..|-+|+-|++|+-||++.+.++ ... .....|.++.++|.+.+||.|-..+
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccceeeecccC
Confidence 99999999999999999999999999999999999999999999987432 222 2357899999999999999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|-|-+..... ...+.-|... |+++.|.+.|+|+++.|.|+.+-.|.
T Consensus 615 ~vevlh~skp~----------kyqlhlheSc----VLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 615 NVEVLHTSKPE----------KYQLHLHESC----VLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred cEEEEecCCcc----------ceeecccccE----EEEEEecccCceeeecCchhhhhhcc
Confidence 99998754221 4567778877 99999999999999999999988885
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1.7e-18 Score=181.75 Aligned_cols=244 Identities=11% Similarity=0.113 Sum_probs=176.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
++++++.++.|++||+.+++.+..+.....+..++|+|+++ .++++ +.++.|.+||+.+....
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~l~~~d~~~~~~~--------------- 108 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGK-ILYIANEDDNLVTVIDIETRKVL--------------- 108 (300)
T ss_pred EEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCC-EEEEEcCCCCeEEEEECCCCeEE---------------
Confidence 44677889999999999999888777655578899999994 45444 35788999987653110
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH 548 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs 548 (707)
....+...+.+++|+|+|.++++++.++ ..+.+|+..+.... ..+.....+.+++|+
T Consensus 109 --------------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~--~~~~~~d~~~~~~~-~~~~~~~~~~~~~~s 165 (300)
T TIGR03866 109 --------------------AEIPVGVEPEGMAVSPDGKIVVNTSETT--NMAHFIDTKTYEIV-DNVLVDQRPRFAEFT 165 (300)
T ss_pred --------------------eEeeCCCCcceEEECCCCCEEEEEecCC--CeEEEEeCCCCeEE-EEEEcCCCccEEEEC
Confidence 1112233467899999999999988754 25778898877654 333333456789999
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC-------CCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEE
Q 005235 549 PTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL-------KEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 549 pd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~-------~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~ 618 (707)
|++.+|++++ ++.|++||+.+++.+..+..+. .....++|+|+|++++++ +.++.|.+||+.++ +....
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 9999887654 7999999999998877665321 123568899999986554 45678999999876 54544
Q ss_pred eecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 619 LKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 619 l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
+. +...+.+++|+|+|.+|+++ +.+|.|.||| +.+... +..+..... .++++|+|
T Consensus 245 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d------~~~~~~---~~~~~~~~~-----~~~~~~~~ 300 (300)
T TIGR03866 245 LL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID------VAALKV---IKSIKVGRL-----PWGVVVRP 300 (300)
T ss_pred EE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE------CCCCcE---EEEEEcccc-----cceeEeCC
Confidence 43 45579999999999988876 5689999995 444443 455554332 67788765
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.1e-19 Score=191.04 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=214.0
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEE-EEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCL-RVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l-~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
+|+.....||.+-.||.|.||++..+-+. ..+.+ +..|.+++|++.+ .|++++.+|.|.-||+.++.+..
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~lk~~~----- 104 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHTLKQKY----- 104 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecccCceeE-----
Confidence 46666678999999999999999987554 34454 7899999999887 79999999999999987763321
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-c
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-K 537 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~ 537 (707)
......+.|.+++.+|.+..++.||.|| .+..++...+.... ..| .
T Consensus 105 -----------------------------~~d~~gg~IWsiai~p~~~~l~IgcddG---vl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 105 -----------------------------NIDSNGGAIWSIAINPENTILAIGCDDG---VLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred -----------------------------EecCCCcceeEEEeCCccceEEeecCCc---eEEEEecCCceEEEEeeccc
Confidence 1334567899999999999999999998 88888887776552 334 6
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe----C----CCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE----T----GLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~----~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
.++.|.++.|+|++..+++|+ ||.|++||..++..++... . ...-|.++.|-.+ ..|++|...|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 679999999999999999998 9999999999987665221 1 1123677777644 4899999999999999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc-ccceEEeeCCCCCCCCCeeEEEEc
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL-IVPLEILRGHTSSNGRGVMDCKFH 687 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~-~~pl~~l~gh~~~~~~gV~~l~fs 687 (707)
...+ .+++.+..|.+.|.+++..+++..+++++.|+.|.-|.. .++.. .+.......|... |.+++..
T Consensus 232 ~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~------~~~~~~wv~~~~r~~h~hd----vrs~av~ 300 (691)
T KOG2048|consen 232 SIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL------TTNKSEWVINSRRDLHAHD----VRSMAVI 300 (691)
T ss_pred ccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe------cCCccceeeeccccCCccc----ceeeeee
Confidence 9987 788999999999999999999999999999999888843 22211 2223334455555 9999988
Q ss_pred CCCCEEEEEeCCCcEEE
Q 005235 688 PRQPWLFTAGADSVIRL 704 (707)
Q Consensus 688 pdg~~L~s~g~Dg~Irl 704 (707)
++ .|++||.|.++.+
T Consensus 301 ~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 301 EN--ALISGGRDFTLAI 315 (691)
T ss_pred cc--eEEecceeeEEEE
Confidence 77 8999999998865
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=189.58 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=193.0
Q ss_pred EEEEE-eCCCcEEEEeCCCCeEEE-EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 390 LEYKG-STDGTVRIWEVESGRCLR-VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 390 ~l~sg-s~DgtVrIWd~~tg~~l~-~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
+++++ ..-..|.+|.+.....+. .+-..++|.|++-+|.| ..+++++..+.|++|.+.+|...
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL-------------- 116 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILL-------------- 116 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHH--------------
Confidence 34443 344578999987654443 33338999999999999 34555559999999999887432
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC------cee--eeee-cc
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK------LSH--RIPF-KL 538 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~------~~~--~~~~-~~ 538 (707)
..+..|-..|+|+.|+.||.+|+|++.|| .|.+|.+..- ... ...| .|
T Consensus 117 --------------------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg---~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 117 --------------------NVLSAHYQSITCLKFSDDGSHIITGSKDG---AVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred --------------------HHHHhhccceeEEEEeCCCcEEEecCCCc---cEEEEEEEeecccccCCCccceeeeccC
Confidence 12458999999999999999999999999 9999997431 111 1345 78
Q ss_pred CCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--
Q 005235 539 HGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-- 613 (707)
Q Consensus 539 ~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-- 613 (707)
.-+|+.+...+. ...|++++ |+++++||+..+.++.++... ..|.+++++|.+..+.+|+.+|.|.+.++....
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 889999887664 46788888 999999999999999888755 779999999999999999999999998875432
Q ss_pred -------------cceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235 614 -------------KPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678 (707)
Q Consensus 614 -------------~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~ 678 (707)
..+..+.+|.. +|+|++++-||.+|++|+.||.|+|| |..+..+ ++++....++
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW------di~S~Q~---iRtl~~~kgp-- 321 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW------DIYSKQC---IRTLQTSKGP-- 321 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE------ecchHHH---HHHHhhhccc--
Confidence 23567789988 99999999999999999999999999 4445544 4444433333
Q ss_pred CCeeEEEEcCCCC
Q 005235 679 RGVMDCKFHPRQP 691 (707)
Q Consensus 679 ~gV~~l~fspdg~ 691 (707)
|+.+.+.|-.+
T Consensus 322 --VtnL~i~~~~~ 332 (476)
T KOG0646|consen 322 --VTNLQINPLER 332 (476)
T ss_pred --cceeEeecccc
Confidence 77777755433
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5.8e-19 Score=175.90 Aligned_cols=242 Identities=14% Similarity=0.147 Sum_probs=189.6
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.+|.|+|.++ .|++++.||++++|++...+. .....|..+
T Consensus 13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l-----------------------------------~~~~~~~~p 56 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSL-----------------------------------KLKFKHGAP 56 (323)
T ss_pred hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhh-----------------------------------hhheecCCc
Confidence 57899999998874 799999999999999765421 124578999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~ 575 (707)
+.+++|.+ ...+++|+.|| .|+.+|+.++... ..-.|...|+|+.+.+-...+++|+ |++|++||.+....+..
T Consensus 57 lL~c~F~d-~~~~~~G~~dg---~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 57 LLDCAFAD-ESTIVTGGLDG---QVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT 131 (323)
T ss_pred eeeeeccC-CceEEEeccCc---eEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc
Confidence 99999986 46788999998 9999999999874 3339999999999999888888888 99999999997666666
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 576 LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 576 l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
+... ..|.|++.+ |+.|++|+.+..|.+||+++...+.+.- ..-.-.+++|++-|.+.=+|++|-||.|.+=.+.
T Consensus 132 ~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d- 207 (323)
T KOG1036|consen 132 FDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD- 207 (323)
T ss_pred cccC-ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC-
Confidence 6554 478888875 8899999999999999999865544221 1234568999999988889999999999886442
Q ss_pred ccCCCCCCcccceEEeeCCCCCC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSN-----GRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~-----~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
... ....--..|+.|.... ...|++++|||--..|||||.||.|.+||+
T Consensus 208 ---~s~-~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 208 ---DSE-EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ---Cch-HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 110 0001134566664321 123899999999999999999999999985
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.4e-21 Score=210.39 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=183.3
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
...|...|.++..-..+..+++|+.+. .+-+|.+.+.... ..| .|.++|.++.|++...+|++|+ +|+|++|||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~---k~~L~~i~kp~~i-~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDE---KVNLWAIGKPNAI-TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCce---eeccccccCCchh-heeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 446888888888877788999999887 8889999988887 677 9999999999999999999888 899999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
...+.+++|.+|...+.+++|||-|.+++.|+.|+.+++||.+.. .+.+.+.+|...|..+.|+|+|+++++|++|.++
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 999999999999999999999999999999999999999999865 6889999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|| |+..+.+ +..|.+|... |..+.|||..-.|++||.|++|++||+
T Consensus 179 ki~------d~~agk~---~~ef~~~e~~----v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 179 KIW------DLTAGKL---SKEFKSHEGK----VQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eee------ccccccc---cccccccccc----ccccccCchhhhhccCCCCceeeeecc
Confidence 999 5556655 7889999988 999999999999999999999999996
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=7.4e-19 Score=190.51 Aligned_cols=377 Identities=14% Similarity=0.178 Sum_probs=265.8
Q ss_pred CCCCCCCcc-----ccCCCCC---ccCC---hhhhhhhhccC-----cCCCCc---ccCc--ccceecccc---cccccc
Q 005235 288 KPKLPGHEE-----SYNPSLE---YIPT---QEELNSYQLMY-----EEDRPK---FIPR--RFTSLRSVP---AYENAV 343 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge---~L~s---~~~~~~W~~~~-----~~dr~~---~lp~--~~~~lr~v~---~~~~~i 343 (707)
...|.||.+ +|+-.+. +|+| +..++.|...- ...|.. -+++ .+.++-.+. ..+..+
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence 347888887 4776654 6777 44578886421 111222 1121 122222221 223445
Q ss_pred cccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC--CeEEEEEec-----
Q 005235 344 KDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES--GRCLRVLEI----- 416 (707)
Q Consensus 344 ~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t--g~~l~~l~~----- 416 (707)
.+|-+-+..+.|.|.. -.|+++|.|.++.||...+ |--+.....
T Consensus 264 ~GHeDWV~sv~W~p~~-----------------------------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEG-----------------------------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred cCcccceEEEEEccch-----------------------------hhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 5666666777777654 2688899999999998764 433333333
Q ss_pred -CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-----CCchhcccccceeeeccc-----ccccCCCCcEEEEecCCc
Q 005235 417 -GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-----GNEEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDK 485 (707)
Q Consensus 417 -~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-----~~~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~ 485 (707)
.+...+..|+|+++ .+++-+..|..++|.... ....+.+|.+.+..+.+. +.+.+.|.+.+++..-+.
T Consensus 315 ~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred cccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 34588999999994 788889999999999333 234677888999888886 788888999998876533
Q ss_pred cc-----eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--------------------------------
Q 005235 486 LD-----GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-------------------------------- 528 (707)
Q Consensus 486 ~~-----~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-------------------------------- 528 (707)
+. ..-.-|...++|++|-+..-.|++|+... .+++++..+
T Consensus 394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEK---VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEK---VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred ccceeeecccccccccceeeehccCCceeeecccce---eeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 32 12345888999999988666788877655 677776321
Q ss_pred -----------Cce-----e---------------------------eeee-ccCCCeEEEEEeCCCCEEEEEe--C---
Q 005235 529 -----------KLS-----H---------------------------RIPF-KLHGLPVSSVFHPTRSIFFVST--K--- 559 (707)
Q Consensus 529 -----------~~~-----~---------------------------~~~~-~~~~~V~~v~fspd~~~l~v~s--d--- 559 (707)
+.. + ...+ +|.-.|.+++.+|+++++++++ .
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 000 0 0112 5667899999999999999986 1
Q ss_pred -CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEEEEcCCC
Q 005235 560 -KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNVAFHRSY 635 (707)
Q Consensus 560 -g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~vafspdg 635 (707)
..|++|+..+-..++.+.+|.-.|+.|+|||||++|++.|.|+++.+|........ +..++.|+.-|+++.|+|++
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 46999999988888889999999999999999999999999999999988654332 34478999999999999999
Q ss_pred CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC----CC-EEEEEeCCCcEEEEe
Q 005235 636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR----QP-WLFTAGADSVIRLYC 706 (707)
Q Consensus 636 ~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd----g~-~L~s~g~Dg~IrlWd 706 (707)
.+|||||.|.+|+||... +.. ...+..+ ....+... |+.++|.|- .. .++.|-..|.|.||.
T Consensus 631 ~~FaTaSRDK~VkVW~~~---~~~-d~~i~~~-a~~~~~~a----VTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEP---DLR-DKYISRF-ACLKFSLA----VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred ceeEEecCCceEEEEecc---Cch-hhhhhhh-chhccCCc----eeeEEeeccccccccceEEEEecccEEEEEe
Confidence 999999999999999543 111 0111111 22344554 999999872 22 567777889999996
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.9e-20 Score=201.77 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=189.8
Q ss_pred CCCCCcccCCCCcEEEEEeCCCcEEEEeCCC---CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235 377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVES---GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE 452 (707)
Q Consensus 377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t---g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~ 452 (707)
+-.++++-....+++|+++..|.|.+||+.. .+.+..|.- ...|+++.|++.....|++|+.||+|++||+.....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3445555556678999999999999999976 333334433 789999999998877889999999999999876432
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
. ....+....|..|.|+| .+.+|+++...| .+.+||++....
T Consensus 169 ~----------------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG---~lqlWDlRqp~r 211 (839)
T KOG0269|consen 169 K----------------------------------STFRSNSESIRDVKFSPGYGNKFASIHDSG---YLQLWDLRQPDR 211 (839)
T ss_pred c----------------------------------ccccccchhhhceeeccCCCceEEEecCCc---eEEEeeccCchh
Confidence 1 12335677899999998 578899999887 999999998765
Q ss_pred eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCC-EEEEEEC--CCcE
Q 005235 532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGD-NLIVGSR--EGKL 604 (707)
Q Consensus 532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~-~L~sGs~--Dg~I 604 (707)
....| .|.|+|.|+.|||++.+||+|+ |+.|+|||+.+.+ .+.++... .+|.++.|-|... +|++++. |-.|
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccchhhhhhccccceE
Confidence 43666 9999999999999999999999 9999999998653 44455443 6799999999875 4566554 6779
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVF 650 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vw 650 (707)
+|||++..--|+.++..|+..++.++|-. +-..|.+|+.||+|..-
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 99999988789999999999999999965 44588899999987654
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.6e-21 Score=208.19 Aligned_cols=252 Identities=16% Similarity=0.209 Sum_probs=203.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA 469 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~ 469 (707)
+++.+..+-.++||+....-+ +...|.|+..-..+ ..+++++.+..+-+|.+......
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~-----hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i---------------- 63 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVA-----HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAI---------------- 63 (825)
T ss_pred ccceeeeeeccccccchhhhh-----hhhhhceeeeeccc-eeeccCCCceeeccccccCCchh----------------
Confidence 344455566678888543211 14456666664444 35667777777778876443211
Q ss_pred ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235 470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH 548 (707)
Q Consensus 470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs 548 (707)
..+.+|.++|.+|.|++....|++|+.+| +|++||+...... +++ +|...+.+|.||
T Consensus 64 ------------------~S~~~hespIeSl~f~~~E~Llaagsasg---tiK~wDleeAk~v-rtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 64 ------------------TSLTGHESPIESLTFDTSERLLAAGSASG---TIKVWDLEEAKIV-RTLTGHLLNITSVDFH 121 (825)
T ss_pred ------------------heeeccCCcceeeecCcchhhhcccccCC---ceeeeehhhhhhh-hhhhccccCcceeeec
Confidence 12568999999999999999999999988 9999999998887 777 999999999999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235 549 PTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 549 pd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
|-+.+++.++ |+.+++||++...|.+.+.+|...+.++.|+|+|+++++|+.|..++|||+..+ +....|..|.+.|.
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQ 200 (825)
T ss_pred cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-cccccccccccccc
Confidence 9999998887 999999999988899999999999999999999999999999999999999876 88899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
++.|||..-++++||.|++|++||+. +...+ ....... .||.+++|+|++..+++|-..
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dle------tfe~I---~s~~~~~----~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLE------TFEVI---SSGKPET----DGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccc------eeEEe---eccCCcc----CCceeeeecCCceeeecCchh
Confidence 99999999999999999999999544 33332 2222222 349999999999988887543
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=180.16 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=201.1
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---------------cccccceeeeccc------------ccc
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---------------QRRVKDLLHVETP------------TAP 470 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---------------~~~~~~v~~~~~~------------~~~ 470 (707)
.....+.|+||| ..|++.+.|+.+.+|++....... ......++..++= +++
T Consensus 50 nf~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 345678999999 589999999999999986531100 0011122222210 677
Q ss_pred cCCCCcEEEEecCCccceE---EeccCCC---eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceee--eee-----
Q 005235 471 DDNMASIVSWLQHDKLDGI---RLRHFKM---VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHR--IPF----- 536 (707)
Q Consensus 471 ~~~d~~i~iW~~~~~~~~~---~~~h~~~---V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~--~~~----- 536 (707)
.+.+..|.+|+.-++.... ...|... ..+++|+|+|.+|++|.. +.|+|+|+.. ++... .++
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----rcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----RCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----ceEEEeeccCCCCCCcchhhhhcccc
Confidence 8889999999998776644 2334443 468999999999998874 4899999943 32210 122
Q ss_pred ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC
Q 005235 537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS 613 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~ 613 (707)
+..+.+.+++|||... .+++++ ..++-||.-..+.++..+-+|.+.|+.+.|+++|+.|++|+. |-.|..||++...
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 3367889999999665 788888 889999998899999999999999999999999999999975 6689999999887
Q ss_pred cceEEeecCCC-CEEEEEE--cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 614 KPYRVLKCHPK-DITNVAF--HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 614 ~~~~~l~~h~~-~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
.++..|..|.. .=..|.| .|.+++||+|+.||.|++||...+++ ++..+..|... |+.++++|--
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--------~~sv~~~~sd~----vNgvslnP~m 352 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--------EVSVTGNYSDT----VNGVSLNPIM 352 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------ccccccccccc----ccceecCccc
Confidence 88888888865 2233444 68899999999999999997764432 35566677777 9999999999
Q ss_pred CEEEEEeCC
Q 005235 691 PWLFTAGAD 699 (707)
Q Consensus 691 ~~L~s~g~D 699 (707)
++++|++..
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 999988753
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.9e-19 Score=180.83 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=184.6
Q ss_pred CCcEEEEEEccCCCccEEEEE--eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC
Q 005235 417 GEAIQYVAWNPLPELPVLAVS--VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF 494 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s--~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~ 494 (707)
.+.++.+.-++-++ ..++++ ..|.|.||++......+.. .+. .+-+.....+..+.+|.
T Consensus 151 ~g~~NRvr~~~~~~-~~~~aswse~G~V~Vw~l~~~l~~l~~-----------------~~~-~~~~s~~~Pl~t~~ghk 211 (440)
T KOG0302|consen 151 YGGINRVRVSRLGN-EVLCASWSENGRVQVWDLAPHLNALSE-----------------PGL-EVKDSEFRPLFTFNGHK 211 (440)
T ss_pred ccccceeeecccCC-cceeeeecccCcEEEEEchhhhhhhcC-----------------ccc-cccccccCceEEecccC
Confidence 56666666666653 334443 4578999997643221110 000 00011112222356888
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECC
Q 005235 495 KMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLL 568 (707)
Q Consensus 495 ~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~ 568 (707)
..=..++|||- ...|++|..-+ .|++|...++.-.. .+| .|...|-.++|+|... .|++|+ |++|+|||++
T Consensus 212 ~EGy~LdWSp~~~g~LlsGDc~~---~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRLLSGDCVK---GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred ccceeeecccccccccccCcccc---ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 88899999993 22356555444 89999998876543 677 9999999999999754 566666 9999999999
Q ss_pred CC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CCcceEEeecCCCCEEEEEEcCCC-CEEEEEe
Q 005235 569 KQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL--SSKPYRVLKCHPKDITNVAFHRSY-PLFASCS 642 (707)
Q Consensus 569 ~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~--~~~~~~~l~~h~~~I~~vafspdg-~llaSgs 642 (707)
.+ .++.+ +.|.+.|+.|.|+..-.+||+|+.||++.|||++. .++|+.+++.|..+|++|.|||.. ..|++++
T Consensus 289 s~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 289 SGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence 87 34443 78888999999998888999999999999999986 347899999999999999999954 5888899
Q ss_pred CCCcEEEEecccccCCCC----CC---cccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcE
Q 005235 643 DDCTAYVFHGMVYSDLNQ----NP---LIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVI 702 (707)
Q Consensus 643 ~Dg~I~Vwd~~~~~Dl~~----~~---~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~I 702 (707)
.|..|.|||+.+-.|... .. .-.|-+.|.-|.+. .-|..+.||++-+ +|++.+.||--
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheeccCCCCeEEEeccccee
Confidence 999999999876544111 10 01233445555332 2288999999877 77888888843
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.8e-19 Score=185.06 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=207.4
Q ss_pred cEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEE--eCCeEEEEECCCCCchh------cccccceee-ecc
Q 005235 399 TVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVS--VGQDVLILNTGLGNEEE------QRRVKDLLH-VET 466 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s--~d~~V~lwd~~~~~~~~------~~~~~~v~~-~~~ 466 (707)
+++|||+..-...-.+.+ .-.+.++.|+... .|++++ .|..|++|.-......+ .+....+++ ..+
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ 90 (673)
T ss_pred ceEEeecccccCccccccCCCCCcceeeeccccc--eEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence 599999876544333333 4559999999887 355554 45567788643321111 111111221 122
Q ss_pred c--ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCC
Q 005235 467 P--TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGL 541 (707)
Q Consensus 467 ~--~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~ 541 (707)
+ +++++..+.|.+|++..+.... +.+|.+.|++|.++....|||+++..| .|.|+.+.++... .+| .....
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG---diiih~~~t~~~t-t~f~~~sgqs 166 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG---DIIIHGTKTKQKT-TTFTIDSGQS 166 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC---cEEEEecccCccc-cceecCCCCe
Confidence 2 7788999999999999665543 778999999999999999999999888 9999999999887 888 33456
Q ss_pred eEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235 542 PVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 542 V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
|.-+.|||..+++++ ++ +|.|.+||+....+... ...|..+...|+|+|.. .+|++.++|.+|.+||.... +...
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~ 245 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTD 245 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccc
Confidence 668999999888765 44 79999999988766554 45688889999999977 46678899999999999854 5566
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
.+. ...+..+|+|+++|.+|+.|+..|.|..||+ ...+ .|+.++..|... |++++|-|.-
T Consensus 246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~------R~~k--~Pv~v~sah~~s----Vt~vafq~s~ 305 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDM------RSTK--APVAVRSAHDAS----VTRVAFQPSP 305 (673)
T ss_pred eee-ecCCcceeeecCCceEEEeecCCceEEEEec------ccCC--CCceEeeecccc----eeEEEeeecc
Confidence 665 3578999999999999999999999999954 4433 379999999988 9999998753
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.5e-18 Score=171.43 Aligned_cols=296 Identities=14% Similarity=0.205 Sum_probs=211.4
Q ss_pred eeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe------------EEEEEec
Q 005235 349 RCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGR------------CLRVLEI 416 (707)
Q Consensus 349 rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~------------~l~~l~~ 416 (707)
|.|.|.|+++..-.+ |.--+...|+--++.+.++++|+.||.|.|||++... |+-.-++
T Consensus 26 Ril~L~Ln~d~d~~r---------~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h 96 (397)
T KOG4283|consen 26 RILSLQLNNDKDFVR---------PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQH 96 (397)
T ss_pred hhheeeccCCcceec---------cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccC
Confidence 557888887753221 1222333444445778899999999999999997532 2111111
Q ss_pred ----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235 417 ----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR 492 (707)
Q Consensus 417 ----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~ 492 (707)
.-.|..+.|-|-....+.+++.|.++++||..+... .....
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~-----------------------------------a~~F~ 141 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE-----------------------------------AVDFK 141 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccccee-----------------------------------eEEee
Confidence 457889999886544677777899999999766421 12335
Q ss_pred cCCCeEEEEEcCC---CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE-EEe-CCeEEEEE
Q 005235 493 HFKMVSSVEWHRR---GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF-VST-KKNIRVYD 566 (707)
Q Consensus 493 h~~~V~~v~~sp~---g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~-v~s-dg~I~iwD 566 (707)
..+.|.+-+|+|- ..++|+|..+- .|++-|+..+... ..+ +|.+.|.+|.|+|...+++ +|+ ||.|++||
T Consensus 142 me~~VYshamSp~a~sHcLiA~gtr~~---~VrLCDi~SGs~s-H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 142 MEGKVYSHAMSPMAMSHCLIAAGTRDV---QVRLCDIASGSFS-HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred cCceeehhhcChhhhcceEEEEecCCC---cEEEEeccCCcce-eeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence 5677777788773 34677777766 9999999999988 888 9999999999999988865 455 99999999
Q ss_pred CCCC-eEEEEEe--------------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEE
Q 005235 567 LLKQ-RLIKKLE--------------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNV 629 (707)
Q Consensus 567 l~~~-~~~~~l~--------------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~v 629 (707)
++.- .+...+. .|.+.+.+++|+.+|.++++.+.|.++++|++..+...++.+- .|... .++
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~ 296 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSF 296 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccc
Confidence 9853 3333332 4556799999999999999999999999999987753332221 12111 112
Q ss_pred EE---cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 630 AF---HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 630 af---spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++ +-+...|+---.++++.++. +..+.. +..+.+|... |.+.++-|+-+.++++..|+.|..|.
T Consensus 297 ~~~~~~~~s~vfv~~p~~~~lall~------~~sgs~---ir~l~~h~k~----i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 297 AVHIQSMDSDVFVLFPNDGSLALLN------LLEGSF---VRRLSTHLKR----INCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eEEEeecccceEEEEecCCeEEEEE------ccCceE---EEeeecccce----eeEEeecCchhhhhccccCCcccccc
Confidence 22 33444555555668888884 334433 7788899665 99999999999999999999999984
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.7e-19 Score=174.32 Aligned_cols=251 Identities=15% Similarity=0.167 Sum_probs=185.2
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|++|+|+.|| ..|++++.|+.|+||++...... .| ...... -.-+.
T Consensus 86 ~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~--eH---------------------------r~~R~n-ve~dh 134 (420)
T KOG2096|consen 86 KKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENK--EH---------------------------RCIRQN-VEYDH 134 (420)
T ss_pred CCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhh--hh---------------------------hHhhcc-ccCCC
Confidence 7899999999999 58999999999999998764221 00 000010 11235
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee----------eee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR----------IPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----------~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
.+.|.|+||..-+++....| .++++|-+.+...-. ..| .|.-.+..+-...++.+|++++ |..|.
T Consensus 135 pT~V~FapDc~s~vv~~~~g--~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRG--NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred ceEEEECCCcceEEEEEccC--CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 67899999998887777655 489999876533211 123 4566777888888899999998 99999
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-------cceEEeecCCCCEEEEEEcCCCC
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-------KPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-------~~~~~l~~h~~~I~~vafspdg~ 636 (707)
+|++. |+.+..+......-+..++||+|++|++++.---|++|.+--.. ..+..|++|..+|..++||++..
T Consensus 213 lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 99998 88888888777777888999999999999999999999864221 23457889999999999999999
Q ss_pred EEEEEeCCCcEEEEecccccCCCCCCcccceEEee--CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 637 LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR--GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~--gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.+++.|.||+++|||..+.....+.+.+ +++.. -|.. +..-..++.+|.|..|+.+. ...+++++
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~--Lk~g~~pl~aa--g~~p~RL~lsP~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKI--LKEGSAPLHAA--GSEPVRLELSPSGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchH--hhcCCcchhhc--CCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence 9999999999999998775555555543 33321 1111 11144899999999886554 34566653
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.2e-20 Score=210.54 Aligned_cols=268 Identities=18% Similarity=0.277 Sum_probs=204.0
Q ss_pred eCCCcEEEEeCC--CC----eEEEEEecCCcEEEEEEccCCCcc---EEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 395 STDGTVRIWEVE--SG----RCLRVLEIGEAIQYVAWNPLPELP---VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 395 s~DgtVrIWd~~--tg----~~l~~l~~~~~V~~v~~spdg~~~---lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
|.+.++-||.+. +. +.+..+......+.++|++.+... |+.+..||.|.+|++.... ....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~---~~~~------- 105 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII---ANAS------- 105 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhc---cCcc-------
Confidence 456667777654 22 344555557889999999988542 5666688999999975420 0000
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCCC
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGL 541 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~ 541 (707)
...+.....|.+.|..+.|++.+. .||+|+.+| .|.|||+.+-... ..+ ...+.
T Consensus 106 ------------------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g---eI~iWDlnn~~tP-~~~~~~~~~~e 163 (1049)
T KOG0307|consen 106 ------------------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG---EILIWDLNKPETP-FTPGSQAPPSE 163 (1049)
T ss_pred ------------------hHHHhhhcccCCceeeeeccccCCceeeccCCCC---cEEEeccCCcCCC-CCCCCCCCccc
Confidence 001122457999999999999654 999999988 9999999986544 333 34678
Q ss_pred eEEEEEeCCCCE-EEEEe-CCeEEEEECCCCeEEEEEeCCCC--CeEEEEEcCCC-CEEEEEECCC---cEEEEECCCCC
Q 005235 542 PVSSVFHPTRSI-FFVST-KKNIRVYDLLKQRLIKKLETGLK--EVSSIAIHPAG-DNLIVGSREG---KLCWFDMDLSS 613 (707)
Q Consensus 542 V~~v~fspd~~~-l~v~s-dg~I~iwDl~~~~~~~~l~~~~~--~I~sl~~spdg-~~L~sGs~Dg---~I~vwDl~~~~ 613 (707)
|.+++|+..-.+ |++++ +|.+.|||++..+.+-.+..+.+ .++.++|||++ ..|++++.|. .|.+||++...
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 999999886555 45555 78999999999888777765543 47899999997 5566676654 48999999888
Q ss_pred cceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-
Q 005235 614 KPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP- 691 (707)
Q Consensus 614 ~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~- 691 (707)
.+++++++|...|.++.|++.+ .+|+|++.|+.|.+|+. .++.. +..+...... +..+.|+|..+
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~------~tgEv---l~~~p~~~nW----~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP------NTGEV---LGELPAQGNW----CFDVQWCPRNPS 310 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC------CCceE---eeecCCCCcc----eeeeeecCCCcc
Confidence 9999999999999999999977 79999999999999954 44433 5666665555 99999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 005235 692 WLFTAGADSVIRLYCH 707 (707)
Q Consensus 692 ~L~s~g~Dg~IrlWdl 707 (707)
.++.++-||.|-|++|
T Consensus 311 ~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSL 326 (1049)
T ss_pred hhhhheeccceeeeee
Confidence 6788899999999975
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.6e-19 Score=181.47 Aligned_cols=224 Identities=18% Similarity=0.245 Sum_probs=171.5
Q ss_pred ccccCCCCcEEEEecCCc---cce-------------------EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEE
Q 005235 468 TAPDDNMASIVSWLQHDK---LDG-------------------IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~---~~~-------------------~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iw 524 (707)
+|.|+.+..|.+|++.-. ..+ ...+|+..|..++|+.. .+.||+|+.|. +|.+|
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~---TV~lW 271 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK---TVKLW 271 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc---eEEEE
Confidence 677888888999987411 000 12368889999999875 46789999988 99999
Q ss_pred ECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235 525 QLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAG-DNLIVGS 599 (707)
Q Consensus 525 dl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg-~~L~sGs 599 (707)
|+.++++. ..+ .|.+.|+++.|||..+ +|++|+ |++|.++|++.. ..-+.++ -.+.|-.++|+|.. ..+++++
T Consensus 272 D~~~g~p~-~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTGKPK-SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCCCcc-eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEec
Confidence 99999998 888 7899999999999765 566677 999999999842 2222222 23568999999876 5677888
Q ss_pred CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235 600 REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678 (707)
Q Consensus 600 ~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~ 678 (707)
.||+|+.+|++..++++.++++|...|.++++++.-+ +++++|.|++|++|++...+ +. ....|.-. .
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-----~~-----~v~~~~~~-~ 418 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-----PK-----SVKEHSFK-L 418 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-----Cc-----cccccccc-c
Confidence 9999999999998899999999999999999998766 88999999999999764321 11 12223221 0
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235 679 RGVMDCKFHPRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 679 ~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl 707 (707)
....|.++.|+-+ +|+.||..+.++|||+
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cceeecccCCCcceEEEecCccceEEEeec
Confidence 1156677888777 4677888888999985
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=192.28 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=192.4
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
....+.|+|.|+|+ .|++++.++.|++|+........ ..+..+...
T Consensus 13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P---------------------------------~ti~~~g~~ 58 (933)
T KOG1274|consen 13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP---------------------------------ETIDISGEL 58 (933)
T ss_pred cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC---------------------------------chhhccCce
Confidence 45578999999996 88899999999999965531100 001115666
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|.+++. .+++|++++.++ +|.+|.+..+... ..+ ...-++.+++|+.+|.+++.|+ |-.|++.++.+....+
T Consensus 59 v~~ia~--~s~~f~~~s~~~---tv~~y~fps~~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQN---TVLRYKFPSGEED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred eEEEee--cccceEEeeccc---eEEEeeCCCCCcc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence 777765 456999999988 9999999988876 555 7788999999999999999998 7899999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--------CCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--------PKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--------~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
.+.+|..+|.+|.|+|.|.+||+.+.||.|++||++.+ .+.+++.+- ...+..++|||++..||..+.|+.
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 99999999999999999999999999999999999976 555555422 345778999999888888889999
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|++|+...+. +...|+..... .++.+++|+|.|.|||+++.||.|.|||.
T Consensus 212 Vkvy~r~~we---------~~f~Lr~~~~s--s~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 212 VKVYSRKGWE---------LQFKLRDKLSS--SKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred EEEEccCCce---------eheeecccccc--cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 9999544332 23444432221 23999999999999999999999999984
No 144
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1e-18 Score=168.79 Aligned_cols=229 Identities=19% Similarity=0.230 Sum_probs=180.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC---eEEEEEec-CCcEEEEEEcc--CCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESG---RCLRVLEI-GEAIQYVAWNP--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg---~~l~~l~~-~~~V~~v~~sp--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
.+..|+|+|.|++|+|+.+..+ +.+.++.+ .++|..++|.. -| ..|++++.|+.|.||.-..+.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~--------- 91 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGR--------- 91 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCc---------
Confidence 4568999999999999999864 45677777 89999999976 45 366777789999999966551
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCC-c-eeeeee
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKK-L-SHRIPF 536 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~-~-~~~~~~ 536 (707)
|. +......|...|++|+|.|. |-.|++++.|| .|.|.+.... . ......
T Consensus 92 -------------------w~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG---~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 92 -------------------WT----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDG---KVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred -------------------hh----hhhhhhhhcccceeecccccccceEEEEeeCCC---cEEEEEEcCCCCccchhhh
Confidence 11 11124579999999999874 67899999999 8888887655 2 111222
Q ss_pred -ccCCCeEEEEEeCC---C-----------CEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCC----CE
Q 005235 537 -KLHGLPVSSVFHPT---R-----------SIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPAG----DN 594 (707)
Q Consensus 537 -~~~~~V~~v~fspd---~-----------~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg----~~ 594 (707)
.|.-.|++++|.|. | +.|++|+ |+.|+||+...+ .+-++|.+|..+|..++|.|.- .+
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 88899999999986 4 3477777 999999998875 4456689999999999999974 57
Q ss_pred EEEEECCCcEEEEECCCCCcc--eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 595 LIVGSREGKLCWFDMDLSSKP--YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 595 L~sGs~Dg~I~vwDl~~~~~~--~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
||++|.||+|.||-.+....+ .+.+......+..+.||..|++|+.++.|+.|.+|.
T Consensus 226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred eEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999999999987643222 233444567899999999999999999999999994
No 145
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=183.25 Aligned_cols=234 Identities=16% Similarity=0.222 Sum_probs=189.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.|++=+|..-..+++++.||.|+|||+....+ ...+..|.+.
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----------------------------------~~~f~AH~G~ 111 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----------------------------------IRTFKAHEGL 111 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhh----------------------------------hheeecccCc
Confidence 467889999998744688888999999998765321 1246689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l 576 (707)
|..|+++. ..+++++.|. +|+.|-+... .. .++...+.+..+.-+..+..++++ ...|-|||..-..++.++
T Consensus 112 V~Gi~v~~--~~~~tvgdDK---tvK~wk~~~~-p~-~tilg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 112 VRGICVTQ--TSFFTVGDDK---TVKQWKIDGP-PL-HTILGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSM 183 (433)
T ss_pred eeeEEecc--cceEEecCCc---ceeeeeccCC-cc-eeeecccccccccccccccccccc-CceeeecccccCCcccee
Confidence 99999987 6788888887 9999998774 33 566667777777777666666655 456999999988999999
Q ss_pred eCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 577 ETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
.-+...|.++.|+|-.. .|++|..|+.|.+||++.+ .|++.+.- ...-+.++|+|.+-.|++|+.|..++.||++..
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhh
Confidence 99989999999999874 5666779999999999987 66655542 344578999998889999999999999976522
Q ss_pred cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
..|+....+|... |++++|||.|+-++|||.|.+||||.
T Consensus 262 --------~~p~~v~~dhvsA----V~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 262 --------SRPLNVHKDHVSA----VMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred --------cccchhhccccee----EEEeccCCCcchhccccccceEEEee
Confidence 2368889999988 99999999999999999999999996
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.1e-17 Score=177.90 Aligned_cols=330 Identities=12% Similarity=0.083 Sum_probs=226.3
Q ss_pred ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235 325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE 404 (707)
Q Consensus 325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd 404 (707)
|.+.+...+.........| +.++.+|.. ..++.|++||.+.+.+
T Consensus 95 wDl~~lk~~~~~d~~gg~I-------Wsiai~p~~-----------------------------~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAI-------WSIAINPEN-----------------------------TILAIGCDDGVLYDFS 138 (691)
T ss_pred EecccCceeEEecCCCcce-------eEEEeCCcc-----------------------------ceEEeecCCceEEEEe
Confidence 4566666666666666665 677777543 4788999999999999
Q ss_pred CCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh------ccc----ccceeeeccc----
Q 005235 405 VESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE------QRR----VKDLLHVETP---- 467 (707)
Q Consensus 405 ~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~------~~~----~~~v~~~~~~---- 467 (707)
+..+........ .+.|.+|+|+|++ ..+++|+.||.|++||...+.... ... .--+.++.|.
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t 217 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST 217 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc
Confidence 888877654444 6899999999999 468999999999999999886533 111 1123333332
Q ss_pred ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eee-ccCCCe
Q 005235 468 TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPF-KLHGLP 542 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~-~~~~~V 542 (707)
+++|++.|+|.+||...+.+. ....|.+.|.+++..++++++++++.|+ .|.-+...+..... ... .|...|
T Consensus 218 I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~---~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 218 IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP---KIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC---ceEEEEecCCccceeeeccccCCcccc
Confidence 899999999999999866554 3678999999999999999999999988 88888777664421 122 566677
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEE------------------------------------------ECCCC---------
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVY------------------------------------------DLLKQ--------- 570 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iw------------------------------------------Dl~~~--------- 570 (707)
.+++..++ .+++|+ |.++.+- -+.+.
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~ 372 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYI 372 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChh
Confidence 77776654 333333 4443332 22211
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEEEe-CC
Q 005235 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFASCS-DD 644 (707)
Q Consensus 571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaSgs-~D 644 (707)
.+.+-.......|+|.++||+|+.|+.++- .+++||.+.... .++... ........+.|+-++..++.++ .+
T Consensus 373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~ 450 (691)
T KOG2048|consen 373 HLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI 450 (691)
T ss_pred hheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEeccc
Confidence 111111223356899999999999999875 367888887542 222211 2234567889999999888887 77
Q ss_pred CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..+.+++.... +... +..+... ....+|..++.+|+|.|||.++.+|.|.+|++
T Consensus 451 ~~le~~el~~p----s~ke---l~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 451 FSLEEFELETP----SFKE---LKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred ceeEEEEecCc----chhh---hhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 78888854321 1111 1111111 11234999999999999999999999999986
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=169.71 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=196.4
Q ss_pred CCCcEEEEeCCCC--eEE-EEEec-CCcEEEEEEccCCCccEEEEEeC--------CeEEEEECCCCCchhcccccceee
Q 005235 396 TDGTVRIWEVESG--RCL-RVLEI-GEAIQYVAWNPLPELPVLAVSVG--------QDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 396 ~DgtVrIWd~~tg--~~l-~~l~~-~~~V~~v~~spdg~~~lla~s~d--------~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.|+.|.+-.+..+ +.. ..|.+ .+.|..++-+|-.. .|++.+.. -.+.||.++.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~------ 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS------ 110 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccc------
Confidence 3566666655543 222 23333 78999999999874 56666543 134455544321110000
Q ss_pred ecccccccCCCCcEEEEecCCccceEE-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee------
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIR-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------ 536 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------ 536 (707)
.| ..+..+ ..+-+.|.||.|.|++..+++.. +. .|.+|++.........+
T Consensus 111 ---------------tl----E~v~~Ldteavg~i~cvew~Pns~klasm~-dn---~i~l~~l~ess~~vaev~ss~s~ 167 (370)
T KOG1007|consen 111 ---------------TL----ECVASLDTEAVGKINCVEWEPNSDKLASMD-DN---NIVLWSLDESSKIVAEVLSSESA 167 (370)
T ss_pred ---------------hh----hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC---ceEEEEcccCcchheeecccccc
Confidence 00 000111 13456899999999999999887 33 89999998876621333
Q ss_pred ccCCCeEEEEEeC--CCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 005235 537 KLHGLPVSSVFHP--TRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 537 ~~~~~V~~v~fsp--d~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~ 612 (707)
.+....++-+|+| ++..+++.+|+++..||+++......+. .|...|..++|+|+-. +|++|+.||.|++||.+..
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 2344567778888 7889999999999999999987666654 5777899999999875 5788999999999999998
Q ss_pred CcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeccccc---------CCCC----------CCcc-cceEEee
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYS---------DLNQ----------NPLI-VPLEILR 671 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~---------Dl~~----------~~~~-~pl~~l~ 671 (707)
..|++.+.+|...|++|.|+|.. +++.+||.|..|.+|.+..-+ |... +++. ..+.++.
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 89999999999999999999964 588899999999999765222 0000 0110 1245677
Q ss_pred CCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEE
Q 005235 672 GHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLY 705 (707)
Q Consensus 672 gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlW 705 (707)
.|... |.+++||...||| |+-+.||.+.|=
T Consensus 328 ehEDS----VY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 328 EHEDS----VYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred ccccc----eEEEeeccCCCeeEEEeccCceEEee
Confidence 88888 9999999999997 567999998763
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=187.63 Aligned_cols=251 Identities=16% Similarity=0.193 Sum_probs=175.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEE--E-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRV--L-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~~~ 464 (707)
..|++++.|.++++||+.+++++.. + .+.+.|.+++|.|.....+++++.||.|.|||+...... +......+...
T Consensus 113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 4899999999999999999998866 3 338999999999998778888999999999998754310 00000000000
Q ss_pred ccccc---ccCCCCcEEEEecCCccceEEeccCCCeEE---EEEcCCCCEEEEEeC-CCCccEEEEEECCCCceee----
Q 005235 465 ETPTA---PDDNMASIVSWLQHDKLDGIRLRHFKMVSS---VEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHR---- 533 (707)
Q Consensus 465 ~~~~~---~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~---v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~---- 533 (707)
...+ ..-....+.. -..+...|.+ +.+..|...||+++. |+ .|+|||+++.....
T Consensus 193 -~n~~ptpskp~~kr~~k----------~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 193 -HNTAPTPSKPLKKRIRK----------WKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred -ccCCCCCCchhhccccc----------cccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCC
Confidence 0000 0000011111 2234445554 555668889998887 66 99999999865431
Q ss_pred ---eee-cc---CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCC--eEEEEEcCCCCEEEEEECC
Q 005235 534 ---IPF-KL---HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKE--VSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 534 ---~~~-~~---~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~D 601 (707)
..+ .+ .-.+.++.....|.+|++.+ |+.|++||+..- .++..+.++... -..-..+|++.+|++|+.|
T Consensus 259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 111 11 23567777788888887765 999999999763 334444333211 1112458999999999999
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
...++|.+.....+...+.+|...|++|+|.|..- -+|+|++|.+++||++.
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99999999988888888999999999999988532 56777999999999873
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=3.6e-18 Score=168.67 Aligned_cols=216 Identities=16% Similarity=0.219 Sum_probs=171.3
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|+++...+...+++++++.||.|.+||+......-. . .++ ...+.+- ......+|...
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s-~li-----------~k~~c~v-----~~~h~~~Hky~ 103 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--S-GLI-----------AKHKCIV-----AKQHENGHKYA 103 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhh--c-cce-----------eheeeec-----cccCCccceee
Confidence 688999999887667899999999999999876532100 0 000 0000000 00013468889
Q ss_pred eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC---CEEEEEe-CCeEEEEECCCCe
Q 005235 497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR---SIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~---~~l~v~s-dg~I~iwDl~~~~ 571 (707)
|.++.|-| |...|.+++-|. +++|||.++-+.. ..|...+.|.+-+++|-. .++++|+ +-.|++.|+..|.
T Consensus 104 iss~~WyP~DtGmFtssSFDh---tlKVWDtnTlQ~a-~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDH---TLKVWDTNTLQEA-VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred eeeeEEeeecCceeecccccc---eEEEeecccceee-EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 99999988 667888899888 9999999999887 788889999999999843 4566677 7899999999999
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcceEEee--------------cCCCCEEEEEEcCCCC
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLK--------------CHPKDITNVAFHRSYP 636 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~~~~~~~~l~--------------~h~~~I~~vafspdg~ 636 (707)
...+|.+|.+.|.++.|+|...+ |++|+.||.|++||++....++..+. +|.+.|++++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 99999999999999999999876 58899999999999986544444443 5667899999999999
Q ss_pred EEEEEeCCCcEEEEecccc
Q 005235 637 LFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd~~~~ 655 (707)
++++++.|..+++|+...+
T Consensus 260 ~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESG 278 (397)
T ss_pred hhhhccCccceEEeecccC
Confidence 9999999999999986544
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.4e-18 Score=172.03 Aligned_cols=225 Identities=12% Similarity=0.155 Sum_probs=176.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
.+++++.+.+.-|.+||.-||+....+.. -..-.+++|+||| ..+.++....|+++|+........
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG--eqlfaGykrcirvFdt~RpGr~c~------ 194 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG--EQLFAGYKRCIRVFDTSRPGRDCP------ 194 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC--CeEeecccceEEEeeccCCCCCCc------
Confidence 35888899999999999999998887776 2456899999999 466678888999999843321100
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH 539 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~ 539 (707)
++.. ...-..+..+.|.|++|||.. ..+++++... .+-|+.-..+... ..+ +|.
T Consensus 195 -----------------vy~t---~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~pl-~llggh~ 250 (406)
T KOG2919|consen 195 -----------------VYTT---VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRPL-QLLGGHG 250 (406)
T ss_pred -----------------chhh---hhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCce-eeecccC
Confidence 0000 000022446788999999954 5888888755 8889988887776 666 999
Q ss_pred CCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeEEEEEeCCCC-C--eEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 540 GLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRLIKKLETGLK-E--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~~~~l~~~~~-~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
+.|+.++|+++|..|++|+ +..|..||++. ..++..|..|.. . ---+++.|+|++|++|+.||.|++||+....
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 9999999999999999998 78999999986 456666766654 2 2235668999999999999999999999855
Q ss_pred cceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
.++..+..|...++.|+++|--+++|+++..
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CcccccccccccccceecCcccceeeeccCc
Confidence 7778888899999999999999999998753
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=176.66 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=160.1
Q ss_pred EeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCC----------------ceeeeee-ccCCCeEEEEEeCC
Q 005235 490 RLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKK----------------LSHRIPF-KLHGLPVSSVFHPT 550 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~----------------~~~~~~~-~~~~~V~~v~fspd 550 (707)
.+.|.+.++.+.-++-|+- .|+-+..| .|.||++... +.. .+| +|++.-.+++|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G---~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl-~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENG---RVQVWDLAPHLNALSEPGLEVKDSEFRPL-FTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccC---cEEEEEchhhhhhhcCccccccccccCce-EEecccCccceeeecccc
Confidence 4577788887777776543 34444444 9999998532 112 445 78888899999994
Q ss_pred CC-EEEEEe-CCeEEEEECCCCeEE---EEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCC-cceEEeecCC
Q 005235 551 RS-IFFVST-KKNIRVYDLLKQRLI---KKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSS-KPYRVLKCHP 623 (707)
Q Consensus 551 ~~-~l~v~s-dg~I~iwDl~~~~~~---~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~ 623 (707)
.. .|++|. .+.|++|...++.-. ..|.+|...|-.|+|||.. ..|++||.||.|+|||++.+. ++--..++|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 32 255554 688999998886432 3466799999999999976 578999999999999999862 3333448999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVI 702 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~I 702 (707)
+.|+.|.|+...++||+|++||+++||| |++.....|+..++-|..+ |++|.|||... .|+++|.|..|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwD------LR~~~~~~pVA~fk~Hk~p----ItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWD------LRQFKSGQPVATFKYHKAP----ITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEE------hhhccCCCcceeEEeccCC----eeEEEeccccCceEEeccCCCcE
Confidence 9999999999999999999999999994 5555555789999999998 99999999654 67888999999
Q ss_pred EEEeC
Q 005235 703 RLYCH 707 (707)
Q Consensus 703 rlWdl 707 (707)
.||||
T Consensus 373 tiWDl 377 (440)
T KOG0302|consen 373 TIWDL 377 (440)
T ss_pred EEEEe
Confidence 99996
No 152
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=3.7e-18 Score=185.23 Aligned_cols=215 Identities=13% Similarity=0.036 Sum_probs=187.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
..+++|+.|++|.+|...++..+.++.+ .+.|.|++...++ .+++++.|.++++|-.....
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~---------------- 133 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV---------------- 133 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh----------------
Confidence 4699999999999999999999999888 8999999988888 59999999999999854321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
..+.+|+..|.++..-|.+ .++|||.|. +|++|.- +... .+| +|..-|..++
T Consensus 134 --------------------~~l~gH~asVWAv~~l~e~-~~vTgsaDK---tIklWk~--~~~l-~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 134 --------------------YSLQGHTASVWAVASLPEN-TYVTGSADK---TIKLWKG--GTLL-KTFSGHTDCVRGLA 186 (745)
T ss_pred --------------------cccCCcchheeeeeecCCC-cEEeccCcc---eeeeccC--Cchh-hhhccchhheeeeE
Confidence 1256899999999999988 889999988 9999986 4555 788 9999999999
Q ss_pred EeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235 547 FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI 626 (707)
Q Consensus 547 fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I 626 (707)
+-+++.++-++.||.|++|++ ++.++..+.+|...|.+++...++..+++++.|+++++|+.. .+.+.+...+-.|
T Consensus 187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsi 262 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSI 262 (745)
T ss_pred EecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccce
Confidence 999988777777999999999 788999999999999999988888899999999999999987 6677777666689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 627 TNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+++.+-++|. +++|+.||.|+||...
T Consensus 263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 263 WSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9999998887 5577789999999654
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.8e-17 Score=163.62 Aligned_cols=255 Identities=17% Similarity=0.235 Sum_probs=186.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
|...+..+++||.|++|+|||.... .|...++. .+.|..|.|.+- | ..+++++.|+++.||.-....
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-qvvA~cS~Drtv~iWEE~~~~----- 94 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-QVVATCSYDRTVSIWEEQEKS----- 94 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-ceEEEEecCCceeeeeecccc-----
Confidence 5566779999999999999996432 46666666 899999999764 4 356777889999999842110
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC-----
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK----- 529 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~----- 529 (707)
.+..-+.|.. ...+....+.|+.|.|.| -|-.||+++.|| .|+||+.-..
T Consensus 95 ----------------~~~~~~~Wv~----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 95 ----------------EEAHGRRWVR----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---ILRIYEAPDPMNLSQ 151 (361)
T ss_pred ----------------cccccceeEE----EEEeecCCcceeEEEecchhcceEEEEeccCc---EEEEEecCCcccccc
Confidence 1112233421 223556788999999998 577899999999 9999986432
Q ss_pred -cee------eeee-ccCCCeEEEEEeCC---CCEEEEEeCC------eEEEEECCCC----eEEEEEeCCCCCeEEEEE
Q 005235 530 -LSH------RIPF-KLHGLPVSSVFHPT---RSIFFVSTKK------NIRVYDLLKQ----RLIKKLETGLKEVSSIAI 588 (707)
Q Consensus 530 -~~~------~~~~-~~~~~V~~v~fspd---~~~l~v~sdg------~I~iwDl~~~----~~~~~l~~~~~~I~sl~~ 588 (707)
..+ ..+. .+..+..|+.|+|. .++|++|++. .+.||....+ ..+.+|..|..+|+.|+|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 111 0122 35677889999985 4789998854 8999976543 345567789999999999
Q ss_pred cCCC----CEEEEEECCCcEEEEECCCCC-------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 589 HPAG----DNLIVGSREGKLCWFDMDLSS-------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 589 spdg----~~L~sGs~Dg~I~vwDl~~~~-------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
.|+- ..||+++.|| |+||.+.... ..+..+..|++.|+.+.|+-.|..|+|.|+||
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 9973 5789999999 9999987310 23455778999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCC
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHT 674 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~ 674 (707)
.|++|... -+.+.++...+....
T Consensus 311 ~VRLWkan------y~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 311 CVRLWKAN------YNNLWKCTSVLKAEG 333 (361)
T ss_pred eeeehhhh------hhhhheeeeEEeccC
Confidence 99999532 223333455555443
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.9e-18 Score=167.04 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=179.8
Q ss_pred EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235 420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS 499 (707)
Q Consensus 420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~ 499 (707)
-.|+.|++-| ..+++++.+|.|.|||+.+.... ..+.+|..+|++
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~ia----------------------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIA----------------------------------RMLSAHVRPITS 70 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchh----------------------------------hhhhccccceeE
Confidence 6899999999 47888889999999998775321 135589999999
Q ss_pred EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEe
Q 005235 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~ 577 (707)
++||++|..|+|++.|. .|.+||+..+... ..+...++|..+.|||.....++++ +..-.+.++... .+++.
T Consensus 71 l~WS~dgr~LltsS~D~---si~lwDl~~gs~l-~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDW---SIKLWDLLKGSPL-KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVL 144 (405)
T ss_pred EEecCCCCEeeeecCCc---eeEEEeccCCCce-eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeec
Confidence 99999999999999998 9999999999977 7788899999999999876666655 444445555432 22221
Q ss_pred CCC------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 578 TGL------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 578 ~~~------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
... ...++..|++.|+++++|...|.+.++|..+. +++..++--. ..|.++.|+..|..|+.-+.|..|+.|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 111 11234468999999999999999999999987 7777777555 789999999999999999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLYC 706 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWd 706 (707)
++....+........|...+..-- +...-.+++|+.+|.+++.+++ -..++||.
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 876322221222212222222110 0112567899999999977764 45688884
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=173.50 Aligned_cols=243 Identities=12% Similarity=0.127 Sum_probs=191.3
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|++|.|+|.. ..+++++.|++++||.+...... .+..+.-...+
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~--------------------------------~lqS~~l~~fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNP--------------------------------KLQSIHLEKFP 259 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccCh--------------------------------hheeeeeccCc
Confidence 6789999999998 47899999999999987543111 11112234678
Q ss_pred eEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeee-ee-cc-CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 497 VSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRI-PF-KL-HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~-~~-~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
|.+.+|+|+|. .+++++... .+++||+.+.+.... +. ++ ...+.....+|++++|+.++ .|.|.+....+++
T Consensus 260 i~~a~f~p~G~~~i~~s~rrk---y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSGRRK---YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred cceeeecCCCceEEEecccce---EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 99999999999 788888765 999999988776421 12 22 34667888999999999988 8999999999999
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.+.+++-. +.|+.++|+.+|..|++.+.+|.|.+||++.. .++..+....+ .-++++.|+++.+||+||+.|.|.||
T Consensus 337 li~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 337 LITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhheeeec-cEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEe
Confidence 99888765 67999999999999999999999999999987 67777764322 23567888999999999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe--CCCcEEE
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG--ADSVIRL 704 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g--~Dg~Irl 704 (707)
+.. +........|++.+..-+.. |++++|+|+.++||.|| .+..+||
T Consensus 415 d~~---s~~~s~~PkPik~~dNLtt~----Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 415 DGN---SCFASTNPKPIKTVDNLTTA----ITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred ccc---hhhccCCCCchhhhhhhhee----eeeeeeCcchhhhhhhhhccccceEE
Confidence 765 44444455678888776666 99999999999987776 4555655
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=8.7e-18 Score=174.86 Aligned_cols=205 Identities=21% Similarity=0.279 Sum_probs=164.5
Q ss_pred EeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCce---eeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCe
Q 005235 490 RLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLS---HRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKN 561 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~---~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~ 561 (707)
..-+...|++++|||.-+ .+|+|...| .|-+||+.+... ....| .|.++|.++.|+|... .+++++ ||+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G---~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGG---QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCC---cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345789999999999654 667777666 999999953222 11445 8899999999999653 344444 999
Q ss_pred EEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EE
Q 005235 562 IRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LF 638 (707)
Q Consensus 562 I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-ll 638 (707)
||+-|+.++. .+..+.....++++++|+.+...+++|..=|.+.+||+++.+..+..++-|...|++|+++|..+ +|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 9999998763 34444445567899999998888888888789999999998887888999999999999999876 88
Q ss_pred EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
||||.|++++|||++ .+...+. |+-....|... |.++.|||.+-.|+|.+.|..|||||
T Consensus 339 aT~s~D~T~kIWD~R---~l~~K~s--p~lst~~Hrrs----V~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLR---QLRGKAS--PFLSTLPHRRS----VNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred eecccCcceeeeehh---hhcCCCC--cceecccccce----eeeeEEcCCCCceEeeccCCceEEee
Confidence 999999999999877 3433332 34455677776 99999999999999999999999997
No 157
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=9.8e-16 Score=164.84 Aligned_cols=271 Identities=11% Similarity=0.112 Sum_probs=178.9
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecc
Q 005235 391 EYKGSTDGTVRIWEVES-GR--CLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 391 l~sgs~DgtVrIWd~~t-g~--~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
+++.+.++.|++|++.+ |+ ++..+...+....++++|+++ .|++++ .++.|.+|++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~---------------- 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADD---------------- 67 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCC----------------
Confidence 33447799999999974 43 556666567788999999994 455554 4677888876421
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eeeccCCCeE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPFKLHGLPV 543 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~~~~~~V~ 543 (707)
+.+... ......+....++|+|+|++|++++.. .+.|.+|++.+..... ..+.+...+.
T Consensus 68 --------g~l~~~--------~~~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~ 129 (330)
T PRK11028 68 --------GALTFA--------AESPLPGSPTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGLEGCH 129 (330)
T ss_pred --------CceEEe--------eeecCCCCceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCCCccc
Confidence 111100 011223456789999999999888753 2499999997432110 1223334577
Q ss_pred EEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE-------EEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC
Q 005235 544 SSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK-------KLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS 613 (707)
Q Consensus 544 ~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~-------~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~ 613 (707)
+++|+|+++++++++ ++.|.+||+.+...+. .+..+ .....++|+|+|++|++++. ++.|.+|+++...
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 889999999998876 6999999997632221 12222 34678999999999988876 8999999997421
Q ss_pred ---cceEEeecC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235 614 ---KPYRVLKCH------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD 683 (707)
Q Consensus 614 ---~~~~~l~~h------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~ 683 (707)
+.+..+..+ ......+.|+|++++|+++. .+++|.+|++... ......+....... ....
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-----~~~~~~~~~~~~~~-----~p~~ 278 (330)
T PRK11028 209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-----GSVLSFEGHQPTET-----QPRG 278 (330)
T ss_pred CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-----CCeEEEeEEEeccc-----cCCc
Confidence 223333222 12234689999999888775 4789999965311 11111122222111 2567
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235 684 CKFHPRQPWLFTAGA-DSVIRLYCH 707 (707)
Q Consensus 684 l~fspdg~~L~s~g~-Dg~IrlWdl 707 (707)
++|+|+|++|++++. +++|.+|++
T Consensus 279 ~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 279 FNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEE
Confidence 899999999988775 899999963
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.1e-15 Score=162.44 Aligned_cols=275 Identities=25% Similarity=0.370 Sum_probs=205.8
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEEec-CC-cEEEEEE-ccCCCccEEEEEe-CCeEEEEECCCCCchhcccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGR-CLRVLEI-GE-AIQYVAW-NPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~-~l~~l~~-~~-~V~~v~~-spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~ 458 (707)
|......++.++.|+.+.+|+...+. .+..+.. .. .+..+.+ ++++...++..+. ++.+.+|++...
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-------- 144 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-------- 144 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC--------
Confidence 44555678888899999999998887 6666666 32 6777777 7777312333233 677777776540
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee-
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF- 536 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~- 536 (707)
.........|...|..++|++++.++++++. ++ .+.+|++...... ..+
T Consensus 145 -------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~ 195 (466)
T COG2319 145 -------------------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG---TIKLWDLRTGKPL-STLA 195 (466)
T ss_pred -------------------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCC---ceEEEEcCCCceE-Eeec
Confidence 0122246689999999999999998888875 66 9999999986665 666
Q ss_pred ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIK-KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~-~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
.|...|.+++|+|++. .+++++ |+.|++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|++....
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 7899999999999998 444435 8999999998887777 677776664 33899999999999999999999998764
Q ss_pred cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693 (707)
Q Consensus 614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L 693 (707)
..+..+..|...|.++.|+|++..+++++.|+.+.+|+.. ......... ..+|... |..+.|.+++..+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~ 343 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE------TGKLLSSLT-LKGHEGP----VSSLSFSPDGSLL 343 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC------CCceEEEee-ecccCCc----eEEEEECCCCCEE
Confidence 4355557789999999999988888889989999999543 333211111 2366655 8999994333566
Q ss_pred EEE-eCCCcEEEEeC
Q 005235 694 FTA-GADSVIRLYCH 707 (707)
Q Consensus 694 ~s~-g~Dg~IrlWdl 707 (707)
+.+ ..|+.+.+|++
T Consensus 344 ~~~~~~d~~~~~~~~ 358 (466)
T COG2319 344 VSGGSDDGTIRLWDL 358 (466)
T ss_pred EEeecCCCcEEeeec
Confidence 665 68899999874
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=8.9e-17 Score=172.09 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=104.0
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeE--E----EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcc
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRC--L----RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQR 456 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~--l----~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~ 456 (707)
....+|++||.|..|+||.+..|-. + ..+.+ +-.|.|+.|+|..+ .|++++..++++|||+.+... .+.+
T Consensus 90 F~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD-gil~s~a~g~v~i~D~stqk~~~el~~ 168 (1012)
T KOG1445|consen 90 FADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD-GILASGAHGSVYITDISTQKTAVELSG 168 (1012)
T ss_pred cchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC-ceEEeccCceEEEEEcccCceeecccC
Confidence 3346899999999999999985422 2 11222 56789999999875 699999999999999999865 5667
Q ss_pred cccceeeeccc-----ccccCCCCcEEEEecCCccc--eEEeccCCC-eEEEEEcCCCCEEEEEeCCC-CccEEEEEECC
Q 005235 457 RVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD--GIRLRHFKM-VSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLS 527 (707)
Q Consensus 457 ~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~-V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~ 527 (707)
|.+.+.+..|+ +++.+.+..|++|+...... ....+|.+. -..+.|..+-..|++.+-+. ..+.|++||..
T Consensus 169 h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 169 HTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred CchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeecc
Confidence 88888888887 78889999999999875433 224566543 34567765555666655443 35688899876
Q ss_pred CC
Q 005235 528 KK 529 (707)
Q Consensus 528 ~~ 529 (707)
..
T Consensus 249 ~f 250 (1012)
T KOG1445|consen 249 KF 250 (1012)
T ss_pred cc
Confidence 54
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=2e-16 Score=164.85 Aligned_cols=270 Identities=14% Similarity=0.182 Sum_probs=194.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCe----EEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVESGR----CLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.++++|+.-|.|-+||+.+.+ -+..+ .+.++|.+|.|+|.....+++++.||+|++-|++.........
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s------ 274 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS------ 274 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh------
Confidence 589999999999999995322 12222 2278999999999887789999999999999987653221000
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
...-...+..+.|+.....++++..-| ...+||+++.......+ -|...|
T Consensus 275 --------------------------~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 275 --------------------------LDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred --------------------------cCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhccc
Confidence 001233456777888777777777666 89999999887753455 677799
Q ss_pred EEEEEeCCCCE-EEEEe-CCeEEEEECCCC--e--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC---CCC
Q 005235 543 VSSVFHPTRSI-FFVST-KKNIRVYDLLKQ--R--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD---LSS 613 (707)
Q Consensus 543 ~~v~fspd~~~-l~v~s-dg~I~iwDl~~~--~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~---~~~ 613 (707)
.+|+++|-.++ |++|+ |++++|||++.- + ++-....|...|.+..|||.|-.|++.+.|..|+|||.. ...
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 99999998776 55566 999999999863 1 233445688999999999999889999999999999984 222
Q ss_pred cceEEeecCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEE
Q 005235 614 KPYRVLKCHPK------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKF 686 (707)
Q Consensus 614 ~~~~~l~~h~~------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~f 686 (707)
.+..++. |.. .....+|.|+..+|++|-.-..|-|||.. .++. +..|.+... .+|.+ ..|
T Consensus 406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~------~~q~---v~el~~P~~---~tI~~vn~~ 472 (498)
T KOG4328|consen 406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN------GGQM---VCELHDPES---STIPSVNEF 472 (498)
T ss_pred Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCC------CCEE---eeeccCccc---cccccceee
Confidence 4444443 322 23456899999999999988889999543 2221 333333322 12443 469
Q ss_pred cCCCC-EEEEEeCCCcEEEEe
Q 005235 687 HPRQP-WLFTAGADSVIRLYC 706 (707)
Q Consensus 687 spdg~-~L~s~g~Dg~IrlWd 706 (707)
||-+. +++.++..|.|.||.
T Consensus 473 HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccceeccCCccceEEEEe
Confidence 99988 556666788999985
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=161.58 Aligned_cols=300 Identities=17% Similarity=0.154 Sum_probs=214.3
Q ss_pred cccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC------Ce
Q 005235 336 VPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES------GR 409 (707)
Q Consensus 336 v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t------g~ 409 (707)
-|.|+.-+.+||.-+..|.|+ .++.+|++|++|..++||++.. .+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS-----------------------------~N~~~L~SGGDD~~~~~W~~de~~~~k~~K 95 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFS-----------------------------HNDRFLASGGDDMHGRVWNVDELMVRKTPK 95 (609)
T ss_pred cchhhhhhhhhccccceeeec-----------------------------cCCeEEeecCCcceeeeechHHHHhhcCCC
Confidence 456667777777666666555 4567999999999999999863 34
Q ss_pred EEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235 410 CLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD 487 (707)
Q Consensus 410 ~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~ 487 (707)
.+..... .+.|.|++|.... ..+++++.+++|.+-|+.+... +.+++
T Consensus 96 PI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qs------------------------i~V~~------ 144 (609)
T KOG4227|consen 96 PIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQS------------------------IYVAN------ 144 (609)
T ss_pred CceeccCccccceEEEEEccCC-eeEecCCCcceeEeeeccccee------------------------eeeec------
Confidence 4444433 5889999998876 5788999999999998876421 12210
Q ss_pred eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEE-EEe-CCeE
Q 005235 488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFF-VST-KKNI 562 (707)
Q Consensus 488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~-v~s-dg~I 562 (707)
.....+.|..+..||..+.|++++.++ .|.+||.+.......+| ........+.|+|-.+.|+ +++ .+.+
T Consensus 145 --~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~ 219 (609)
T KOG4227|consen 145 --ENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGP 219 (609)
T ss_pred --ccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCC
Confidence 112345899999999999999999988 99999998776332333 5566788999999876654 555 6889
Q ss_pred EEEECCCCe-EEE------EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-------CCEEE
Q 005235 563 RVYDLLKQR-LIK------KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-------KDITN 628 (707)
Q Consensus 563 ~iwDl~~~~-~~~------~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-------~~I~~ 628 (707)
-+||.+.++ .+. .|......-.++.|+|+|..|++--....-.+||+-+...++..+. |. ..+.+
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS 298 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKS 298 (609)
T ss_pred CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeee
Confidence 999998753 221 2222122235778999999988766555567888875433333332 32 35778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCC--------------cccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP--------------LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~--------------~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
++|.-+.. +++||++-.|++|.+.-..+..... .-..+.+|+||... ++.+.|+|....|+
T Consensus 299 ~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv----~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 299 MTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV----PNQVRFSQHNNLLV 373 (609)
T ss_pred eeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc----ccceeecCCcceEe
Confidence 88887765 8999999999999765322221110 11246789999998 99999999999999
Q ss_pred EEeCCCcEEEEe
Q 005235 695 TAGADSVIRLYC 706 (707)
Q Consensus 695 s~g~Dg~IrlWd 706 (707)
+.|-...++||.
T Consensus 374 SSGVE~~~KlWS 385 (609)
T KOG4227|consen 374 SSGVENSFKLWS 385 (609)
T ss_pred ccchhhheeccc
Confidence 999999999995
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.3e-16 Score=176.42 Aligned_cols=284 Identities=17% Similarity=0.208 Sum_probs=197.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
..++++.+.-.|+|||.+.++++..|.. ...|+.+.+-...+ ..+++++.||.|+||+.-....
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----------- 1145 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----------- 1145 (1387)
T ss_pred ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc-----------
Confidence 3566666667899999999999988877 57789998865432 3688889999999998432100
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCC
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGL 541 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~ 541 (707)
..-.-|.-|..-.. ...+..+.-.-+.|.....+|++++.- +.|+|||..+.... ..+ +....
T Consensus 1146 --------~~~eLVTaw~~Ls~---~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---r~IRIWDa~~E~~~-~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1146 --------KKPELVTAWSSLSD---QLPGARGTGLVVDWQQQSGHLLVTGDV---RSIRIWDAHKEQVV-ADIPYGSSTL 1210 (1387)
T ss_pred --------CCceeEEeeccccc---cCccCCCCCeeeehhhhCCeEEecCCe---eEEEEEecccceeE-eecccCCCcc
Confidence 01112333322111 111222222456787766666666643 49999999988776 555 66666
Q ss_pred eEEEEEeC-CCCEEEEEe-CCeEEEEECCCC---eEEEEEeCCCCC--eEEEEEcCCCC-EEEEEECCCcEEEEECCCC-
Q 005235 542 PVSSVFHP-TRSIFFVST-KKNIRVYDLLKQ---RLIKKLETGLKE--VSSIAIHPAGD-NLIVGSREGKLCWFDMDLS- 612 (707)
Q Consensus 542 V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~~~--I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~- 612 (707)
|+++.-+- .|..|++|. ||.||+||.+.. ..+.....|..+ |..+.+.+.|- .|++|+.+|.|++||++..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 77665433 467788877 999999998763 457777888877 99999998774 5999999999999999973
Q ss_pred CcceEEeecCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 613 SKPYRVLKCHP--K-DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 613 ~~~~~~l~~h~--~-~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
..-+-+...|. + .++++..|+..+++|+|+. +.|+||+.. ...+. .++.-.+--+.....+.+++|||.
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~------G~~l~-~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS------GEQLN-IIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC------hhhhc-ccccCcccccCcCCCcceeeecch
Confidence 22233344443 3 5999999999999999998 999999543 22211 111111111111233899999999
Q ss_pred CCEEEEEeCCCcEEEEe
Q 005235 690 QPWLFTAGADSVIRLYC 706 (707)
Q Consensus 690 g~~L~s~g~Dg~IrlWd 706 (707)
...||+|+.|.+|.||.
T Consensus 1363 ~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred hHhhhhccCCceEEEee
Confidence 99999999999999985
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=160.94 Aligned_cols=277 Identities=13% Similarity=0.194 Sum_probs=196.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
..++++-..|+|++||..||+.+..++. ...++.+.|... +...+++++.||+|++||+++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a------------ 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA------------ 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh------------
Confidence 5788889999999999999999999998 777888888663 33468899999999999987753321
Q ss_pred cccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee--ccCCCe
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF--KLHGLP 542 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~--~~~~~V 542 (707)
...| .++. .+..|++...+++.+++|..-- ..-.|.+||++..+.....+ .|...|
T Consensus 109 ----------~~~~----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 109 ----------RISW----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred ----------heec----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 1112 1233 4566777766778888775321 23489999999887732555 899999
Q ss_pred EEEEEeCCCC-EEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcc
Q 005235 543 VSSVFHPTRS-IFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
+++.|||..+ +|++|+ ||.|.|||+... .++.++ .+...|.++.|+.++ +.|.+-+......+|++..+. +
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~ 246 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-E 246 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-h
Confidence 9999999765 566777 999999999754 234444 355679999998877 568888899999999998764 3
Q ss_pred eEEeecCC------------CCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCe
Q 005235 616 YRVLKCHP------------KDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGV 681 (707)
Q Consensus 616 ~~~l~~h~------------~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV 681 (707)
...+.-.. ..+-.....-+..+++.++. -|...++-+. +..+.....++..|.| |... |
T Consensus 247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~---~~~s~~~~~~~a~l~g~~~ei----V 319 (376)
T KOG1188|consen 247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV---DTSSGSLLTEPAILQGGHEEI----V 319 (376)
T ss_pred hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee---ecccccccCccccccCCcHHH----H
Confidence 22222110 01111111223445555554 5666666433 3344455556777877 5555 8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 682 MDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 682 ~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.++.|.-.+..|+|||.||.+.+|.
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEe
Confidence 9999998999999999999999995
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=8.2e-17 Score=168.54 Aligned_cols=258 Identities=13% Similarity=0.089 Sum_probs=193.0
Q ss_pred cEEEEEeCCeEEEEECCCCCc--h--hcccccceeeeccc------ccccCCCCcEEEEecCCccceE---EeccCCCeE
Q 005235 432 PVLAVSVGQDVLILNTGLGNE--E--EQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI---RLRHFKMVS 498 (707)
Q Consensus 432 ~lla~s~d~~V~lwd~~~~~~--~--~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~ 498 (707)
.+.+++.+.+++|||+..... . .......+.++.|. ++..+.+..+++|...++...+ .......-.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 367788888999999865432 1 11122234455554 4556678889999776552211 112223445
Q ss_pred EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235 499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l 576 (707)
||+......|+++|+..+ .|.|||+....+. +.+ .|...|++|.++-...+|++++ .|.|.|..+.++.....|
T Consensus 84 Cv~~~s~S~y~~sgG~~~---~Vkiwdl~~kl~h-r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSG---CVKIWDLRAKLIH-RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHhhhhcceeeeccCcCc---eeeehhhHHHHHh-hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 666656668999999987 9999999966665 555 8999999999999999999999 699999999998777777
Q ss_pred eCCC-CCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 577 ETGL-KEVSSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 577 ~~~~-~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
.... ..|.-+.|||..++ |.+++.+|.|.+||+........-...|..+...|+|+|... +|++.+.|..|.+||.
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~- 238 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI- 238 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec-
Confidence 6553 44668999998865 566899999999999865333445578999999999999765 8899999999999954
Q ss_pred cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..... ...|.... + ...++|+++|.+|+.|+..|.|..||+
T Consensus 239 -----~s~~s---~~~l~y~~-P----lstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 239 -----RSQAS---TDRLTYSH-P----LSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred -----ccccc---cceeeecC-C----cceeeecCCceEEEeecCCceEEEEec
Confidence 33333 33343322 2 889999999999999999999999986
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=165.85 Aligned_cols=228 Identities=18% Similarity=0.238 Sum_probs=170.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe---EEEEEe-------------------cCCcEEEEEEccCCCccEEEEEeCCeEEE
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGR---CLRVLE-------------------IGEAIQYVAWNPLPELPVLAVSVGQDVLI 444 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~---~l~~l~-------------------~~~~V~~v~~spdg~~~lla~s~d~~V~l 444 (707)
.++++|.|..|..|.|||+.--. +..++. +.+.|.+|+|+-.-...|++++.|.+|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999975211 111111 14566778887766546666777888888
Q ss_pred EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEE
Q 005235 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFM 523 (707)
Q Consensus 445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~I 523 (707)
||+.++.+. ..+..|.+.|.++.|+| ...+|++|+.|+ +|.+
T Consensus 271 WD~~~g~p~----------------------------------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~---~V~l 313 (463)
T KOG0270|consen 271 WDVDTGKPK----------------------------------SSITHHGKKVQTLEWHPYEPSVLLSGSYDG---TVAL 313 (463)
T ss_pred EEcCCCCcc----------------------------------eehhhcCCceeEEEecCCCceEEEeccccc---eEEe
Confidence 887776432 13446899999999999 467899999998 9999
Q ss_pred EECCCCceeeeeeccCCCeEEEEEeCCCCEEE-EEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235 524 HQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF-VST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DNLIVGS 599 (707)
Q Consensus 524 wdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~-v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs 599 (707)
.|++........++..+.|-.++|+|.....+ +++ ||+|+-+|++. ++++.+++.|...|++|++++.- .+|++++
T Consensus 314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 99986433313347889999999999877654 444 89999999997 49999999999999999998765 5688899
Q ss_pred CCCcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 600 REGKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 600 ~Dg~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
.|+.|++|++... .+. ....|. +...|.++.|+-. ++|.|+..+.++|||+.
T Consensus 394 ~d~~Vklw~~~~~-~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 394 TDKVVKLWKFDVD-SPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccceEEEEeecCC-CCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 9999999999754 221 111222 3366777888766 67788888899999543
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=1.7e-16 Score=163.31 Aligned_cols=279 Identities=15% Similarity=0.220 Sum_probs=193.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCe------EE---EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGR------CL---RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~------~l---~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~ 458 (707)
+.++||+.|..|+||-+..+. .+ ..+.. ...|++|.|+|+|+ .|++++.++.|.+|........ ...+
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~-~~d~ 104 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIF-DADT 104 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCc-cccc
Confidence 489999999999999987532 11 12222 78999999999995 5666667789999986531110 0000
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K 537 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~ 537 (707)
..+..-..|- ....+.+|...|..++|++++.++++++-|. .+++||+..+... ..+ .
T Consensus 105 -------------e~~~~ke~w~----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn---s~~l~Dv~~G~l~-~~~~d 163 (434)
T KOG1009|consen 105 -------------EADLNKEKWV----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN---SVRLWDVHAGQLL-AILDD 163 (434)
T ss_pred -------------hhhhCccceE----EEEEecccccchhhhhccCCCceeeeeeccc---eEEEEEeccceeE-eeccc
Confidence 0000011121 0123667999999999999999999999988 9999999999998 777 9
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-----C--------------CC----CCeEEEEEcCCCC
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-----T--------------GL----KEVSSIAIHPAGD 593 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-----~--------------~~----~~I~sl~~spdg~ 593 (707)
|..-|+.++|.|-++++++-+ |+..+.+.+...+.++... . |. .....++|+|+|.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 999999999999999999866 8777777765433222111 0 11 1135578999999
Q ss_pred EEEEEEC----C-----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-----------------CC-EEEEEeCCCc
Q 005235 594 NLIVGSR----E-----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-----------------YP-LFASCSDDCT 646 (707)
Q Consensus 594 ~L~sGs~----D-----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-----------------g~-llaSgs~Dg~ 646 (707)
+|++.+. . +..++|+-..-.+|...+.+...++..+.|+|- ++ .||.++ -..
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s 322 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS 322 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence 9987532 2 234677666555778788877788888888762 12 345554 456
Q ss_pred EEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
|.|||.. +.. |+.... -|-.. |++++|+++|..|+..|.||...+
T Consensus 323 vyvydtq------~~~---P~~~v~nihy~~----iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 323 VYVYDTQ------TLE---PLAVVDNIHYSA----ITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEEeccc------ccc---ceEEEeeeeeee----ecceeecCCCcEEEEeccCCceEE
Confidence 9999543 222 233322 24444 999999999999999999997655
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=8.2e-16 Score=171.62 Aligned_cols=268 Identities=16% Similarity=0.219 Sum_probs=199.3
Q ss_pred CcEEEEeCCCC-eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235 398 GTVRIWEVESG-RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476 (707)
Q Consensus 398 gtVrIWd~~tg-~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~ 476 (707)
+.+.||++... ..-..+.....|.|++|+|.....++.|+.+|.|.+||+..+.....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--------------------- 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--------------------- 280 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------
Confidence 47999999865 56667777999999999998866677777899999999876643210
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCceee--eee----------ccCCCe
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHR--IPF----------KLHGLP 542 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~----------~~~~~V 542 (707)
.........|..+|..+.|..+- .-|++++.|| .|..|+++.-.... ... .....+
T Consensus 281 -------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG---~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~ 350 (555)
T KOG1587|consen 281 -------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG---SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGA 350 (555)
T ss_pred -------cccccccccCCcCeEEEEEeccCCCCceEEEecCC---cEeeeeccccccchhhcccccccccccccccccce
Confidence 00111244789999999996543 4599999999 99999887544311 111 123468
Q ss_pred EEEEEeCCCC-EEEEEe-CCeEEEEECCC---C-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 543 VSSVFHPTRS-IFFVST-KKNIRVYDLLK---Q-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~---~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
+++.|.+..+ .|++|+ +|.|.--+-.. + +....+..|.+.|.++.++|=+..++..+.|.+|+||.....
T Consensus 351 t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~ 430 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI 430 (555)
T ss_pred eeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC
Confidence 8999998654 577788 68887744322 2 123356678899999999998876666666999999998855
Q ss_pred CcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
..|+..+..+...|++++|||..+ +||++..||.|.|| ||..... .|+....-+... ...+.|++.|+
T Consensus 431 ~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW------DLl~~~~-~Pv~s~~~~~~~----l~~~~~s~~g~ 499 (555)
T KOG1587|consen 431 ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW------DLLQDDE-EPVLSQKVCSPA----LTRVRWSPNGK 499 (555)
T ss_pred CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh------hhhcccc-CCcccccccccc----cceeecCCCCc
Confidence 578888888888899999999877 78888899999999 5544433 345555444444 77788999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 005235 692 WLFTAGADSVIRLYCH 707 (707)
Q Consensus 692 ~L~s~g~Dg~IrlWdl 707 (707)
.|+.|...|+|.+|+|
T Consensus 500 ~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 500 LLAVGDANGTTHILKL 515 (555)
T ss_pred EEEEecCCCcEEEEEc
Confidence 9999999999999976
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=168.00 Aligned_cols=248 Identities=15% Similarity=0.191 Sum_probs=195.8
Q ss_pred CcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc----ccccC
Q 005235 398 GTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP----TAPDD 472 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~----~~~~~ 472 (707)
..+.|||+..|..+.++++ .+.|.||+|+.||. .+++++.|..|.+|+.......-..|++.+.++.|. ....+
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhc
Confidence 4699999999999999998 89999999999994 788888999999999888777778899999999987 23333
Q ss_pred CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eeeccCCCeEEEEEeCC
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPFKLHGLPVSSVFHPT 550 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~~~~~~V~~v~fspd 550 (707)
+-....+|+...+.+. .......|.+++|..+|.||+.|-.+| +|.|-+-....... ++-+.+.+|.+++|+|.
T Consensus 112 sLsdFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~~nG---TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 112 SLSDFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGMFNG---TISIRNKNGEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred chhhccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEeccCc---eEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence 4445677876544332 123356788999999999999999988 99998765544431 11257889999999996
Q ss_pred C-----CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 551 R-----SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 551 ~-----~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
. ..+++.. ..++.+|.+. |+.+.+-..-.-...|+.+-++|.+++.|+.|+.+.+|--+ + ..+.++.....
T Consensus 188 sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~ 264 (1081)
T KOG1538|consen 188 SGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G-VRLGTVGEQDS 264 (1081)
T ss_pred CCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C-eEEeeccccce
Confidence 4 3566776 7888888886 44443322222346789999999999999999999999764 3 56677777788
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.|+.|+.+|+++.++.|+.||+|..|++.
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999999999999999753
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=165.85 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=196.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhcccccce-eeecc-------------cccccCCCCcEEEEe
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRRVKDL-LHVET-------------PTAPDDNMASIVSWL 481 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v-~~~~~-------------~~~~~~~d~~i~iW~ 481 (707)
..-|.|+.|+.+. .++.++.|..+.+|.-.+.+. .+....... ....+ .++..++||.+.+.+
T Consensus 14 ~e~vc~v~w~~~e--ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 14 SEKVCCVDWSSNE--EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ceeEEeecccccc--eEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4456789999887 588888888888776444322 211111111 10000 067778899999988
Q ss_pred cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC
Q 005235 482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK 560 (707)
Q Consensus 482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg 560 (707)
..+........|.+.|.+-.|+|+|.-|++++.|| .|+||.-+..- . .++ ....+|.|++|.|+..-++.+..+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG---~iKiWSrsGML-R-Stl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDG---VIKIWSRSGML-R-STVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCc---eEEEEeccchH-H-HHHhhcCceeEEEEECCCCCceEEecCC
Confidence 77776666788999999999999999999999999 99999865432 2 444 677899999999999988888888
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
++.|=-+..+..+-....|.+-|.|++|++..+.+++|+.|-+.+|||-. + .++..-..|..+|++|+|+|+ .+++.
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc-cceee
Confidence 99999998887777889999999999999999999999999999999986 3 667777889999999999999 77777
Q ss_pred EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
+|. .+.++= ....+. |..++||+||..+++|.+.|.+.+
T Consensus 244 ~S~-nt~R~~--------------------~p~~GS----ifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WSY-NTARFS--------------------SPRVGS----IFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeeeec--------------------CCCccc----eEEEEEcCCCceeeccccCceEEE
Confidence 763 223311 111222 999999999999999998887653
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=156.09 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=181.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
.+|++|..-|.|.+|.+.+.+.+..++. ...|+.+.--|++ .+.+-+.|..+.+|++.-+... ..+.-.+.++.|
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i-~i~Si~~nslgF 102 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFI-SIHSIVVNSLGF 102 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceE-EEeeeecccccc
Confidence 3689999999999999999988888874 7889999999987 6999999999999998764321 112222333333
Q ss_pred c---ccccCCCC-cEEEEecC---------Ccc-ceE------EeccCCCeEEEEEcC-CCCE--EEEEeCCCCccEEEE
Q 005235 467 P---TAPDDNMA-SIVSWLQH---------DKL-DGI------RLRHFKMVSSVEWHR-RGDY--LSTVMPAGESRAIFM 523 (707)
Q Consensus 467 ~---~~~~~~d~-~i~iW~~~---------~~~-~~~------~~~h~~~V~~v~~sp-~g~~--lat~s~dg~~~~V~I 523 (707)
. +....... ....+.-. .+. ..+ .....+.+.|..|.. .+.+ +++|..+| .|.+
T Consensus 103 CrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg---hvv~ 179 (323)
T KOG0322|consen 103 CRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG---HVVI 179 (323)
T ss_pred ccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC---eEEE
Confidence 3 11111111 11111111 000 011 123456677777533 4443 45556666 9999
Q ss_pred EECCCCcee---------eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--e--EEEEEeCCCCCeEEEEE
Q 005235 524 HQLSKKLSH---------RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--R--LIKKLETGLKEVSSIAI 588 (707)
Q Consensus 524 wdl~~~~~~---------~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~--~~~~l~~~~~~I~sl~~ 588 (707)
||++++... ..+. .|..+|.++.|.+....=++++ +..+..|++.-. . .-..+......|..+.+
T Consensus 180 wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 180 WDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred EEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEE
Confidence 999987322 0334 6788999999987655555555 778888887643 2 22223333356889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
-||++.+|+++.|++|+||..++. .|+..|+.|.+.|++++|||+.+++|++|.|++|-+|+
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 999999999999999999999988 89999999999999999999999999999999999994
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-14 Score=161.00 Aligned_cols=308 Identities=15% Similarity=0.195 Sum_probs=202.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE----------------------------------------------
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQ---------------------------------------------- 421 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~---------------------------------------------- 421 (707)
..++++++.||+|++||...+..++++.....|.
T Consensus 72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 3578899999999999999988887775533333
Q ss_pred -------------EEEEccCCCccEEEEEeCCeEEEEECCCCCc------hhcccccceeeeccc-----ccccCCCCcE
Q 005235 422 -------------YVAWNPLPELPVLAVSVGQDVLILNTGLGNE------EEQRRVKDLLHVETP-----TAPDDNMASI 477 (707)
Q Consensus 422 -------------~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------~~~~~~~~v~~~~~~-----~~~~~~d~~i 477 (707)
+|.+++.| .+.....+..+.+|+...... ....|+..+.+..++ ++++..+|.|
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI 229 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRI 229 (792)
T ss_pred cchhhhhhhcCCccEEEcCCc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence 33334444 344444555566666555321 111222222222232 7888999999
Q ss_pred EEEecCC-c---c-ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC
Q 005235 478 VSWLQHD-K---L-DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR 551 (707)
Q Consensus 478 ~iW~~~~-~---~-~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~ 551 (707)
.+|.--+ . . ...+.=|...|.+++|+++|.+|++|+..+ .+.+|.+.++.. .-+ ...++|..+.++||+
T Consensus 230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~---VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds 304 (792)
T KOG1963|consen 230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG---VLVLWQLETGKK--QFLPRLGSPILHIVVSPDS 304 (792)
T ss_pred EEEeccccccccccceEEEecccccceeEEecCCceEeecccce---EEEEEeecCCCc--ccccccCCeeEEEEEcCCC
Confidence 9997644 1 1 122445888999999999999999999988 999999999983 344 888999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEeC---C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE--
Q 005235 552 SIFFVST-KKNIRVYDLLKQRLIKKLET---G--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR-- 617 (707)
Q Consensus 552 ~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~-- 617 (707)
.+.++.. |+.|.+..+.+.....++.+ . .+-.+.++++|.-+.++..+..|.|.+||+-+....++
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 9888776 99999988755433332221 1 23356677777555666666677777777653221110
Q ss_pred -----------------------------------------------------------------EeecCCCCEEEEEEc
Q 005235 618 -----------------------------------------------------------------VLKCHPKDITNVAFH 632 (707)
Q Consensus 618 -----------------------------------------------------------------~l~~h~~~I~~vafs 632 (707)
....|...+.+.+|.
T Consensus 385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL 464 (792)
T ss_pred EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence 112454444444443
Q ss_pred C-CCC-EEEEEeCCCcEEEEecccccCCCCCCcc-cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 633 R-SYP-LFASCSDDCTAYVFHGMVYSDLNQNPLI-VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 633 p-dg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~-~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+ ... .+++++.||.++||-+....++...... .|...-.-|... +.+++|+.||. |+++|.|++|.+||.
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~----i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP----ITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc----ccchhhcCCCc-EEEEecCCEEEEecC
Confidence 3 222 7889999999999977544444433322 222222235555 99999999995 667778999999983
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.5e-15 Score=152.60 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=191.8
Q ss_pred cEEEEEeCCCcEEEEeCCCC---eEEEEEec---CCcEEEEEEccC---CCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 389 YLEYKGSTDGTVRIWEVESG---RCLRVLEI---GEAIQYVAWNPL---PELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg---~~l~~l~~---~~~V~~v~~spd---g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
..+++.|. ..|.||+.... +.++.+.. .+....++|+-+ ++..+++++.-|.|+|+|+.++..
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~------- 127 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC------- 127 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-------
Confidence 45555554 45788887542 33333332 567788888754 334677777888899988765421
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
...+.+|...|+.+.++|.. +++++++.|. +|++|++++..+. ..|
T Consensus 128 ---------------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~---svRlwnI~~~~Cv-~VfGG 176 (385)
T KOG1034|consen 128 ---------------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDH---SVRLWNIQTDVCV-AVFGG 176 (385)
T ss_pred ---------------------------ccceeccCccchhhhcCCCCCcEEEEecCCc---eEEEEeccCCeEE-EEecc
Confidence 12467999999999999965 6889999988 9999999999998 777
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe------EEE----------------------EEeCCCCCeEE
Q 005235 537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR------LIK----------------------KLETGLKEVSS 585 (707)
Q Consensus 537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~------~~~----------------------~l~~~~~~I~s 585 (707)
+|.+.|.++.|++++.+|++++ |.+|.+|++...+ +.. +-..|...|-|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 7889999999999999999988 9999999997421 110 11124444555
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEC-CCCC------------cceEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEE
Q 005235 586 IAIHPAGDNLIVGSREGKLCWFDM-DLSS------------KPYRVLKCHPKDITNVAF--HRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 586 l~~spdg~~L~sGs~Dg~I~vwDl-~~~~------------~~~~~l~~h~~~I~~vaf--spdg~llaSgs~Dg~I~Vw 650 (707)
+.|- |+++++-|-++.|..|-. .... ..+..+......|+-+.| .|.+++||.|...|.|.+|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 5553 789999999999999987 2111 223444455566766654 5678899999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|+. .+.... ..++.-+. .+..|...+|+-|+.+|+....|++|.-||
T Consensus 335 dL~------~~ep~~-~ttl~~s~--~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 335 DLD------NNEPPK-CTTLTHSK--SGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ECC------CCCCcc-CceEEecc--ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 554 333211 11222111 123499999999999999999999999997
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.4e-15 Score=150.34 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=173.3
Q ss_pred CcccCCCCcEEEEEeC----C---CcEEEEeCCC---------CeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeE
Q 005235 381 LKPYPVACYLEYKGST----D---GTVRIWEVES---------GRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDV 442 (707)
Q Consensus 381 l~pfp~~~~~l~sgs~----D---gtVrIWd~~t---------g~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V 442 (707)
|...|.+..+|+|+-. . ..+-||.+.. -+++..+.. -+.|.||.|.|+++ -+++-.++.|
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~dn~i 146 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMDDNNI 146 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEeccCce
Confidence 3345555566666532 1 2367898753 234444443 56899999999984 4444458999
Q ss_pred EEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccE
Q 005235 443 LILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRA 520 (707)
Q Consensus 443 ~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~ 520 (707)
.+|++..+...... +.+ .....+....++-+|+| +|+.+++.+. + +
T Consensus 147 ~l~~l~ess~~vae----v~s------------------------s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~---t 194 (370)
T KOG1007|consen 147 VLWSLDESSKIVAE----VLS------------------------SESAEMRHSFTSGAWSPHHDGNQVATTSD-S---T 194 (370)
T ss_pred EEEEcccCcchhee----ecc------------------------cccccccceecccccCCCCccceEEEeCC-C---c
Confidence 99998765432100 000 00113566677888988 8888888763 3 8
Q ss_pred EEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CE
Q 005235 521 IFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DN 594 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~ 594 (707)
+..||+++.... ..+ .|...|..+.|+|+..++++ |+ ||.|+|||+++ ..+++.+.+|..||.++.|+|.- .+
T Consensus 195 l~~~D~RT~~~~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 195 LQFWDLRTMKKN-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEEEccchhhh-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 999999988776 666 78888999999999887655 44 79999999986 46889999999999999999975 56
Q ss_pred EEEEECCCcEEEEECCCCC----------------------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCC
Q 005235 595 LIVGSREGKLCWFDMDLSS----------------------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDC 645 (707)
Q Consensus 595 L~sGs~Dg~I~vwDl~~~~----------------------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg 645 (707)
|++|+.|..|.+|....-. ..+.++..|...|.+++||...+ +|||-|.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 7889999999999764211 12346778999999999998777 788999999
Q ss_pred cEEEEe
Q 005235 646 TAYVFH 651 (707)
Q Consensus 646 ~I~Vwd 651 (707)
.+.|=.
T Consensus 354 RviIs~ 359 (370)
T KOG1007|consen 354 RVIISS 359 (370)
T ss_pred eEEeec
Confidence 998864
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=3.2e-15 Score=147.85 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=179.6
Q ss_pred CeEEEEEecCCcEEEEEEc--cCCCccEEEEEe----CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235 408 GRCLRVLEIGEAIQYVAWN--PLPELPVLAVSV----GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL 481 (707)
Q Consensus 408 g~~l~~l~~~~~V~~v~~s--pdg~~~lla~s~----d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~ 481 (707)
++.+..+...-.+.++.|+ |+....|+.++. .+.|.|..+...
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~------------------------------- 83 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED------------------------------- 83 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-------------------------------
Confidence 4456667777888999998 344334555553 345555544321
Q ss_pred cCCccce--EEeccCCCeEEEEEcCCC-----CEEEEEeCCCCccEEEEEECCCCceee---eee------ccCCCeEEE
Q 005235 482 QHDKLDG--IRLRHFKMVSSVEWHRRG-----DYLSTVMPAGESRAIFMHQLSKKLSHR---IPF------KLHGLPVSS 545 (707)
Q Consensus 482 ~~~~~~~--~~~~h~~~V~~v~~sp~g-----~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~------~~~~~V~~v 545 (707)
+.... ....|..+++.+.|.|+. +.|||.+. .+++|.+....... ..+ .+.++++++
T Consensus 84 --s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-----~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSF 156 (364)
T KOG0290|consen 84 --SGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-----FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSF 156 (364)
T ss_pred --CCceeccCCCCCCCCccceEecCCccccCcchhhcccC-----eEEEEeccCcCCceehhhhhccCcccccCCccccc
Confidence 11111 124789999999999976 46777765 89999998432221 111 345688899
Q ss_pred EEeCCC-CEEEEEe-CCeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 546 VFHPTR-SIFFVST-KKNIRVYDLLKQR---LIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 546 ~fspd~-~~l~v~s-dg~I~iwDl~~~~---~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
.|+.-. ++|.+++ |.+..|||+.++. ....|..|...|..++|..+| +.+|+.+.||.|++||++......-.+
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 998754 4555666 9999999999863 356688999999999999866 678999999999999998653222222
Q ss_pred ecC--CCCEEEEEEcCCCC-EEEEEeCC-CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEE
Q 005235 620 KCH--PKDITNVAFHRSYP-LFASCSDD-CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLF 694 (707)
Q Consensus 620 ~~h--~~~I~~vafspdg~-llaSgs~D-g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~ 694 (707)
... ..+...++|++..+ ++|+-..| ..|.|.|+++.. .|+..|++|.+. |+.++|.|... .|.
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~----VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQAS----VNGIAWAPHSSSHIC 304 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCccc----ccceEecCCCCceee
Confidence 221 45788899998655 78877665 478999776432 368999999998 99999999765 799
Q ss_pred EEeCCCcEEEEeC
Q 005235 695 TAGADSVIRLYCH 707 (707)
Q Consensus 695 s~g~Dg~IrlWdl 707 (707)
|||.|..+.+|||
T Consensus 305 taGDD~qaliWDl 317 (364)
T KOG0290|consen 305 TAGDDCQALIWDL 317 (364)
T ss_pred ecCCcceEEEEec
Confidence 9999999999996
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.6e-16 Score=164.35 Aligned_cols=239 Identities=16% Similarity=0.220 Sum_probs=183.1
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCC--------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVES--------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~t--------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~ 453 (707)
+|+.....+++|+.||++++|+++. -+.+.+|.+ .++|.|++..++++ .+++++.||+|+.|++......
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCc
Confidence 5777788999999999999999932 245667776 89999999999995 8999999999999987632111
Q ss_pred hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
...+.. ......+.+|.+.|..+++|+....|++++.|| +|++|.......
T Consensus 380 ~ds~dp------------------------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg---Tvr~w~~~~~~~-- 430 (577)
T KOG0642|consen 380 DDSYDP------------------------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG---TVRLWEPTEESP-- 430 (577)
T ss_pred ccccCc------------------------chhccceeccccceeeeeecccccceeeecCCc---eEEeeccCCcCc--
Confidence 000000 011234779999999999999999999999999 999999877655
Q ss_pred eee---ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC-------CCeEEEEEcCCCCEEEEEECC
Q 005235 534 IPF---KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL-------KEVSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 534 ~~~---~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~-------~~I~sl~~spdg~~L~sGs~D 601 (707)
..| ...+...+|.|-.....+.+++ -+.--++++..+..+..+.... ..+.-+.++|.+.+.+++..|
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed 510 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED 510 (577)
T ss_pred cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC
Confidence 345 3445566777765553333333 3444455555554444443221 347788999999999999999
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+.|++||..++ .++.....|...++++++.|+|.+|++++.||.|++|..
T Consensus 511 ~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 511 RSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred Cceeccccccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 99999999987 889999999999999999999999999999999999954
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.8e-15 Score=164.55 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=158.7
Q ss_pred CCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccC
Q 005235 397 DGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD 472 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~ 472 (707)
+..|.|||...+. .+.+.. ...+.+++|+|+|+ .|+.++.+ ..|.+|++.++...
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~------------------- 241 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARK------------------- 241 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceE-------------------
Confidence 5789999986544 444444 67899999999994 56655543 25788887554211
Q ss_pred CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT 550 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd 550 (707)
.+....+...+++|+|+|++|++++ .++ ...|.+|++.++.. ..+ .+...+.++.|+|+
T Consensus 242 ----------------~l~~~~g~~~~~~wSPDG~~La~~~~~~g-~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 242 ----------------VVASFRGHNGAPAFSPDGSRLAFASSKDG-VLNIYVMGANGGTP--SQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred ----------------EEecCCCccCceeECCCCCEEEEEEecCC-cEEEEEEECCCCCe--EeeccCCCCcCCEEECCC
Confidence 1111222344689999999998876 454 23455667766654 345 66667889999999
Q ss_pred CCEEEEEe--CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235 551 RSIFFVST--KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 551 ~~~l~v~s--dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
|..|+.++ ++...||++... .....+ .+.. .+++|+|+|++|++++.++ +.+||+.++ ... .+..+ ....
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~ 375 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDE 375 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCC
Confidence 99877665 577888876432 222233 3333 4678999999998887754 666999876 322 23222 2346
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
+++|+|+|++|++++.+|.+.+|++. +. .+. .+..+.+|.+. +..++|||-
T Consensus 376 ~~~~sPdG~~i~~~s~~g~~~~l~~~---~~-~G~---~~~~l~~~~g~----~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISPNGIMIIYSSTQGLGKVLQLV---SA-DGR---FKARLPGSDGQ----VKFPAWSPY 426 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEE---EC-CCC---ceEEccCCCCC----CCCcccCCC
Confidence 78899999999999999999988653 11 222 36677788766 899999985
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=3.9e-15 Score=160.46 Aligned_cols=265 Identities=14% Similarity=0.158 Sum_probs=202.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
...|+.++|-|||. -+..+.++.+.+||+..|.. .+.+|.+.+.+++++ +++|+.|..|.+|+..-.-. .
T Consensus 12 ~hci~d~afkPDGs--qL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L 88 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGT--QLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L 88 (1081)
T ss_pred ccchheeEECCCCc--eEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e
Confidence 34789999999993 45556677899999998864 778899999999998 89999999999997542211 2
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
...|...|.|+.|+|-...|++++.. ..-+|....... ...+....+.+.+|..||.+|+.|. +|+|.|-+-.
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V--~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSV--SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh----hccccChhhhhH--HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 45799999999999999999999864 466787654322 1225566788999999999999998 9999998743
Q ss_pred CCeEEEEEe---CCCCCeEEEEEcCCC-----CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 569 KQRLIKKLE---TGLKEVSSIAIHPAG-----DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 569 ~~~~~~~l~---~~~~~I~sl~~spdg-----~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
++..-.+. +...+|.+++|+|.. +.+++.....++.++.++ + +.+..-+.-.-.-.|+.+-++|.++..
T Consensus 163 -gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G-~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 163 -GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-G-KQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred -CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-c-eeecccccCCCCchhheeccCCcEEEE
Confidence 43333333 355779999999964 678888888899999886 3 333323333334568899999999999
Q ss_pred EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+.|+.+++|.- . .+.+.++...... |+.++.+|+++.++.|..||+|.-|+|
T Consensus 240 GGsdk~L~~fTR-------~---GvrLGTvg~~D~W----IWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR-------D---GVRLGTVGEQDSW----IWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCCceEEEee-------c---CeEEeecccccee----EEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999999931 1 1234555444444 999999999999999999999988774
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=1.3e-13 Score=148.54 Aligned_cols=241 Identities=23% Similarity=0.291 Sum_probs=185.9
Q ss_pred ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC
Q 005235 415 EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF 494 (707)
Q Consensus 415 ~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~ 494 (707)
.....+.++.+.+.+. .++.++.++.+.+|+...... . ...+..+.
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-----------------------~----------~~~~~~~~ 108 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEK-----------------------L----------IKSLEGLH 108 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCce-----------------------e----------EEEEeccC
Confidence 3378899999999983 566666799999999765420 0 01122212
Q ss_pred -CCeEEEEE-cCCCC-EEEEEeC-CCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE
Q 005235 495 -KMVSSVEW-HRRGD-YLSTVMP-AGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYD 566 (707)
Q Consensus 495 -~~V~~v~~-sp~g~-~lat~s~-dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD 566 (707)
..+..+.+ ++++. +++..+. ++ .+.+|++.. .... ..+ .|...|.+++|+|++..+++++ ++.+++|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 109 DSSVSKLALSSPDGNSILLASSSLDG---TVKLWDLSTPGKLI-RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184 (466)
T ss_pred CCceeeEEEECCCcceEEeccCCCCc---cEEEEEecCCCeEE-EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEE
Confidence 35666666 77787 4444343 55 999999998 5554 566 8899999999999999877775 89999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceE-EeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYR-VLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~-~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
+..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+ .... .+.+|...+ ...|+|++.++++++.|
T Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 999888999999999999999999998 5555599999999998855 5555 688888775 44899999999999999
Q ss_pred CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.+++|+.... .. .+..+.+|... |.++.|+|++..+++++.|+.+++|++
T Consensus 263 ~~~~~~~~~~~------~~--~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 263 GTIRLWDLRSS------SS--LLRTLSGHSSS----VLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred CcEEEeeecCC------Cc--EEEEEecCCcc----EEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 99999965422 21 23344677666 999999999999988999999999974
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=9.7e-16 Score=149.78 Aligned_cols=272 Identities=14% Similarity=0.122 Sum_probs=183.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhc-ccccceeeecc----cccccCCCCcEEEEecCCccceE
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQ-RRVKDLLHVET----PTAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~-~~~~~v~~~~~----~~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
.+.|+++.|-.++ +|+++...|.|.+|.+.+... .+. .+...+..+.. .+.+-+.+..+.+|++.....
T Consensus 14 ~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~-- 89 (323)
T KOG0322|consen 14 SSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF-- 89 (323)
T ss_pred cchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcce--
Confidence 6789999999998 799999999999999988654 222 12222222211 156677899999998876433
Q ss_pred EeccCCCeEEEEEcC-----CCC---EEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeC-CCC-EE
Q 005235 490 RLRHFKMVSSVEWHR-----RGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHP-TRS-IF 554 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp-----~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fsp-d~~-~l 554 (707)
..-|.-.++++.|.+ +++ .++..-..+ ...+.+-|....... ... ...+.++|..+.. .+. +|
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde~h~~D~g~~tqv-~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDETHKQDGGDTTQV-QIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcc-cchhhhhccCcccee-EccCchhccccCceeeeeccccccceEE
Confidence 334455556666654 221 122111111 111222232222211 111 3346677766432 333 34
Q ss_pred EE-Ee-CCeEEEEECCCC----------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--c-eEEe
Q 005235 555 FV-ST-KKNIRVYDLLKQ----------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--P-YRVL 619 (707)
Q Consensus 555 ~v-~s-dg~I~iwDl~~~----------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--~-~~~l 619 (707)
+. |. +|.|.+||+.++ +.......|..+|.++.+.+.-+.=++|+.+..+..|.+.-... + -..+
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 44 44 799999999987 33334456888999999988777778899999999999875421 1 1222
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
.-....|..+.+-||++.||+++.|+.||||+.++. .|+..|+-|... |++++|+|+.+.+|+||.|
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsag----vn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAG----VNAVAFSPDCELMAAASKD 314 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------Cchhhhhhhhcc----eeEEEeCCCCchhhhccCC
Confidence 223456889999999999999999999999965533 368899999875 9999999999999999999
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
++|.+|+|
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=9.1e-14 Score=142.01 Aligned_cols=226 Identities=11% Similarity=0.115 Sum_probs=167.6
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc--ccccceeeeccc-----ccccCCCCcEEEEecCCccceEE
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ--RRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~--~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
..++.+.|+.+. .+++.+.....++++......... .....+...-|+ ++.......+++.+...+.....
T Consensus 6 ~ti~~~~~Nqd~--~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 6 PTINFIGFNQDS--TLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred cceeeeeeccce--eEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 346667788887 577777766678888765443111 112234444444 22232334477777766665556
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEe---CCeEE
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVST---KKNIR 563 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~s---dg~I~ 563 (707)
......|.+|.++.+ .|+++-.+ .|.|||+...+.. .++ .+...+.++.+++.+.+++.-+ -|.|.
T Consensus 84 ~~fpt~IL~VrmNr~--RLvV~Lee----~IyIydI~~MklL-hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRK--RLVVCLEE----SIYIYDIKDMKLL-HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EecCCceEEEEEccc--eEEEEEcc----cEEEEecccceee-hhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 667788999998743 45554432 7999999998877 666 2344577777777777888743 59999
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEE
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFAS 640 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaS 640 (707)
|||+.+-+.+..+..|.+.+.+|+|+++|.+||++|..|+ |+||.+..+ ..+..|+... ..|.+++|||++++|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999999999999999999999999999999999999998 699999888 4566666433 35889999999999999
Q ss_pred EeCCCcEEEEecc
Q 005235 641 CSDDCTAYVFHGM 653 (707)
Q Consensus 641 gs~Dg~I~Vwd~~ 653 (707)
.|..++|+||.+.
T Consensus 236 sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 236 SSNTETVHIFKLE 248 (391)
T ss_pred ecCCCeEEEEEec
Confidence 9999999999775
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=1.2e-14 Score=143.96 Aligned_cols=258 Identities=12% Similarity=0.208 Sum_probs=177.5
Q ss_pred CCCeEEE--EEecCCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235 406 ESGRCLR--VLEIGEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL 481 (707)
Q Consensus 406 ~tg~~l~--~l~~~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~ 481 (707)
.+++.+. .|.+.-+++.+.|.|+.. ..=+.++.+..+++|.+...+..+.. ..++.
T Consensus 83 ~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~--~~~L~------------------ 142 (364)
T KOG0290|consen 83 DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVEL--QSVLN------------------ 142 (364)
T ss_pred CCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceeh--hhhhc------------------
Confidence 3455443 345578999999999862 12234455568999997653221100 00000
Q ss_pred cCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCce--eeeee-ccCCCeEEEEEeCCCCEEE-E
Q 005235 482 QHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLS--HRIPF-KLHGLPVSSVFHPTRSIFF-V 556 (707)
Q Consensus 482 ~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~--~~~~~-~~~~~V~~v~fspd~~~l~-v 556 (707)
......+..++++..|+. +-+++.+.+-|- ++.|||+.++.. .+..+ .|...|..++|...+..+| +
T Consensus 143 -----~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS 214 (364)
T KOG0290|consen 143 -----NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFAS 214 (364)
T ss_pred -----cCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEE
Confidence 001235677999999987 667888888877 999999999743 22445 9999999999998665444 4
Q ss_pred Ee-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCC-CEEEEEECC-CcEEEEECCCCCcceEEeecCCCCEEEEE
Q 005235 557 ST-KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPAG-DNLIVGSRE-GKLCWFDMDLSSKPYRVLKCHPKDITNVA 630 (707)
Q Consensus 557 ~s-dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spdg-~~L~sGs~D-g~I~vwDl~~~~~~~~~l~~h~~~I~~va 630 (707)
.+ ||.||+|||+...-...+.. ...+...++|++.. +++|+-..| ..|.|.|++....++..|++|.+.|++++
T Consensus 215 vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence 44 99999999997543333322 23567888998765 556654444 56999999999899999999999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC-CEEEEEeCC
Q 005235 631 FHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ-PWLFTAGAD 699 (707)
Q Consensus 631 fspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg-~~L~s~g~D 699 (707)
|.|.. ..|+||++|..+.|||+.. +...+...|+...... .. |+.+.|++.. .||+.+...
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q---~~~~~~~dPilay~a~-~E----VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQ---MPRENGEDPILAYTAG-GE----VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ecCCCCceeeecCCcceEEEEeccc---ccccCCCCchhhhhcc-ce----eeeeeecccCCCEEEEEecC
Confidence 99965 4999999999999997642 1122333344433322 22 9999999754 588777643
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.6e-15 Score=173.63 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=180.7
Q ss_pred cEEEEEeCCCcEEEEeCCC---CeE---EEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----hccc
Q 005235 389 YLEYKGSTDGTVRIWEVES---GRC---LRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE----EQRR 457 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~t---g~~---l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~----~~~~ 457 (707)
.+++.|..||.|.+|+... +.. +.++. +.+.|..+.|++.+...|++++.+|.|.|||+...+.. ....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 4899999999999999865 222 22222 28999999999998556777778999999999875432 2224
Q ss_pred ccceeeeccc------ccccCCCCcEEEEecCCccceE-EeccC--CCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECC
Q 005235 458 VKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRHF--KMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 458 ~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~--~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~ 527 (707)
...|.++.|. +++++.++.+.+||+......+ +..+. ..+..++|||++ ..+++++.|.....|.+||++
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 5677778777 8999999999999998775544 33332 347889999976 467777777767899999998
Q ss_pred CCceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCc
Q 005235 528 KKLSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGK 603 (707)
Q Consensus 528 ~~~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~ 603 (707)
.-......+ .|...|.++.|.+.+ .+|++++ |+.|.+|+..+++.+..+....+|+..+.|+|... .+++++.||.
T Consensus 241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 776664667 999999999999987 5566666 99999999999999999999889999999999875 7888999999
Q ss_pred EEEEECCCCC
Q 005235 604 LCWFDMDLSS 613 (707)
Q Consensus 604 I~vwDl~~~~ 613 (707)
|.||.+....
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999997653
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-14 Score=161.48 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=148.4
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l 554 (707)
..+.+|+..+.....+..|...+.+++|+|+|++|++++.++....|.+||+.++... ......+...+++|+|+|..|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCCEE
Confidence 4566666665554456677888999999999999999886654568999999887643 211333445578999999988
Q ss_pred EEEe--CCeEE--EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 555 FVST--KKNIR--VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 555 ~v~s--dg~I~--iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
+++. ++.+. +||+.++.. ..+..+...+.+++|+|+|+.|+.++ .+|...||+++........+ .+.. .++
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~ 338 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSA 338 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence 8764 66555 457766654 45666666788999999999877665 56788888876543333434 3443 467
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 630 AFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 630 afspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+|+|+|..|+.++.++ +.+|| +.++.. ..+..+. . ..++.|+|+|.+|++++.+|.+.+|.
T Consensus 339 ~~SpDG~~ia~~~~~~-i~~~D------l~~g~~----~~lt~~~-~----~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 339 QISADGKTLVMINGDN-VVKQD------LTSGST----EVLSSTF-L----DESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred cCCCCCCEEEEEcCCC-EEEEE------CCCCCe----EEecCCC-C----CCCceECCCCCEEEEEEcCCCceEEE
Confidence 8999999998887765 55584 433332 2222221 1 45678999999999999999888875
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=8.2e-15 Score=150.28 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=158.3
Q ss_pred EeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee------eee-ccCCCeEEEEEeCCCC-EEEEEe-C
Q 005235 490 RLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR------IPF-KLHGLPVSSVFHPTRS-IFFVST-K 559 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------~~~-~~~~~V~~v~fspd~~-~l~v~s-d 559 (707)
..+|.++|..++|+| +...+|+|+.|. +|.||++..+.... ..+ +|...|-.|+|||... .|++++ |
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~---~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDT---KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCc---eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 558999999999999 556788999888 99999987654321 344 8899999999999754 455555 9
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEE
Q 005235 560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLF 638 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~ll 638 (707)
.+|.+||+.+++.+-++. |...|.++.|+-+|.+|++.+.|++|+|||.+++ +++..-.+|.+. -..+.|-.+|.++
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCcee
Confidence 999999999999888887 8899999999999999999999999999999988 667766778653 3456687888865
Q ss_pred EEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 639 ASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 639 aSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
.+|- .+..+-+|+-. ++... .-+..|.... ||.---|.|+...|+.+| .|+.||.|.+
T Consensus 232 tTGfsr~seRq~aLwdp~---nl~eP---~~~~elDtSn-----Gvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPN---NLEEP---IALQELDTSN-----GVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeccccccccceeccCcc---cccCc---ceeEEeccCC-----ceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 5553 57789999654 22222 1244554443 488888999999886555 7999999853
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=2.2e-15 Score=151.38 Aligned_cols=227 Identities=19% Similarity=0.272 Sum_probs=169.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
-+++.||.-|.|||.|+.++++...+.+ +..|+.|.++|+....+++++.|..|++|++.+....
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-------------- 171 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-------------- 171 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE--------------
Confidence 3788888999999999999999998888 8999999999998778889999999999998775321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--------------e
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--------------R 533 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--------------~ 533 (707)
.++ +-..+|.+.|.++.|+.+|.+|++++.|. ++++|++...+.. .
T Consensus 172 ----------~Vf-------GG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 172 ----------AVF-------GGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred ----------EEe-------cccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 111 11458999999999999999999999988 9999999842211 0
Q ss_pred eee--------------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-Ce-------------EEEEEeCCCCCe-
Q 005235 534 IPF--------------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QR-------------LIKKLETGLKEV- 583 (707)
Q Consensus 534 ~~~--------------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~-------------~~~~l~~~~~~I- 583 (707)
.+| -|...|.|+.|- |.++++-+ ++.|..|-..+ .+ .+..+.-....|
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 111 123344444444 46677755 89999998721 11 122233233333
Q ss_pred -EEEEEcCCCCEEEEEECCCcEEEEECCCCCcce-EEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 584 -SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY-RVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 584 -~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~-~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
...+|.|-++.||.|...|.|++||++....+. .++..+ ...|+..+||.++.+|+...+|++|.-||
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 345667888999999999999999998764322 223222 45799999999999999999999999995
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=4.1e-14 Score=142.12 Aligned_cols=280 Identities=11% Similarity=0.164 Sum_probs=171.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee-eec
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL-HVE 465 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~-~~~ 465 (707)
+.++.....|+.|.+|++...+-...+.. ...+.+++|||+|...|.++..+-.|.+|.+.+.......+.+... ..+
T Consensus 61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA 140 (447)
T ss_pred eeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE
Confidence 34677778999999999988887777766 7889999999999545556667889999998776443222221111 111
Q ss_pred ccccccCCCCcE-EEEecCCcc-------------ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 466 TPTAPDDNMASI-VSWLQHDKL-------------DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 466 ~~~~~~~~d~~i-~iW~~~~~~-------------~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
| ..+|.. .+-.+..-+ .....-.+-..+.+.|+|+|+.||+ ||---.-.
T Consensus 141 f-----~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV------------wd~~Leyk 203 (447)
T KOG4497|consen 141 F-----HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV------------WDNVLEYK 203 (447)
T ss_pred E-----CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE------------ecchhhhe
Confidence 1 011111 011100000 0001111233456677777765554 33211111
Q ss_pred eeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe---------------------------------------
Q 005235 532 HRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--------------------------------------- 571 (707)
Q Consensus 532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--------------------------------------- 571 (707)
. ..+.-.-.+..++|+|.+++|++|+ |+.+||.|--+-+
T Consensus 204 v-~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 204 V-YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred e-eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 1 1112234577899999999999998 9988886642111
Q ss_pred ---------------------EEEEEeC------CCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecC
Q 005235 572 ---------------------LIKKLET------GLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 572 ---------------------~~~~l~~------~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
.+.+++. ....+.-++|++|..++++-.. -+.+-+||++.. +....+ -.
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avL-iQ 360 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVL-IQ 360 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-hhhhhh-hh
Confidence 0111111 1123677899999999888643 356899999865 433333 24
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
..+|++..|+|..+.|+.+.....+++|- ... +.. +. ..+.. ..|..+.|+-+|..|+-.|.|.-
T Consensus 361 k~piraf~WdP~~prL~vctg~srLY~W~------psg-~~~--V~-vP~~G----F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWA------PSG-PRV--VG-VPKKG----FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ccceeEEEeCCCCceEEEEcCCceEEEEc------CCC-ceE--Ee-cCCCC----ceeeeEEecCCCcEEEEEcCCce
Confidence 67899999999999999888777889993 222 221 11 11111 23999999999999999998863
No 187
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.2e-13 Score=138.54 Aligned_cols=226 Identities=18% Similarity=0.231 Sum_probs=156.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
-++.+..|-+||+|+-.. .+...++. ...|+|++|-|.+. .-++++.-+.|.+|........-
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-selavgCr~gIciW~~s~tln~~------------- 176 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCRAGICIWSDSRTLNAN------------- 176 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-ceeeeeecceeEEEEcCcccccc-------------
Confidence 456778899999999766 66667777 78899999999985 46677777789999865431100
Q ss_pred ccccCCCCcEEEEecCCccceE--EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPV 543 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~ 543 (707)
..++. ..+....+ -.+| ..|+++.|.++|..+++++.+. ..|.|||.+++..+ ++ ...+.+.
T Consensus 177 -------r~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs--ssi~iWdpdtg~~~--pL~~~glgg~s 242 (445)
T KOG2139|consen 177 -------RNIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS--SSIMIWDPDTGQKI--PLIPKGLGGFS 242 (445)
T ss_pred -------ccccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc--ceEEEEcCCCCCcc--cccccCCCcee
Confidence 00000 00000111 2234 6899999999999999999854 69999999999885 44 6678889
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce------
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY------ 616 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~------ 616 (707)
-+.|+||+.+|++++ |+..++|+....-.........+.|...+|+|+|++|+..+. |.-.+|.+...+++.
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 999999999999999 999999976544332233344568999999999998776554 233344433211110
Q ss_pred --------EE------eec---CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 617 --------RV------LKC---HPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 617 --------~~------l~~---h~~~I~~vafspdg~llaSgs~Dg 645 (707)
.. ..+ -.+.+.+++|.|.|.+||+.-..+
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 00 011 135678999999999999876443
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=8.2e-14 Score=142.36 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l 576 (707)
|.-+-|+ ..++|.++.+. .+.+++.++.++... ..+.....|.+|.++ .+.|+++-...|+|||+.+.+++.++
T Consensus 49 IvEmLFS--SSLvaiV~~~q-pr~Lkv~~~Kk~~~I-Ce~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQ-PRKLKVVHFKKKTTI-CEIFFPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEeecc--cceeEEEecCC-CceEEEEEcccCceE-EEEecCCceEEEEEc--cceEEEEEcccEEEEecccceeehhh
Confidence 4444454 45677777644 478999999888776 555666788888887 45678877777999999999999887
Q ss_pred eC---CCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEE
Q 005235 577 ET---GLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT-AYVF 650 (707)
Q Consensus 577 ~~---~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~-I~Vw 650 (707)
.. +...+.++++++.+.+|+.- ...|.|.+||+.+- +++.++.+|.+.+.+++||++|.+||++|+-|+ ||||
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 64 33447777777777788864 33688999999877 889999999999999999999999999999996 6899
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++. .+.. +..|+-.... ..|.+++|||++++|.+.|..++|++|.|
T Consensus 202 ~v~------~G~k---l~eFRRG~~~--~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 202 SVP------EGQK---LYEFRRGTYP--VSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EcC------CccE---eeeeeCCcee--eEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 653 3333 5555433221 23899999999999999999999999975
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.5e-14 Score=154.46 Aligned_cols=246 Identities=14% Similarity=0.128 Sum_probs=176.2
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|..++|.|.. ..|++++.++.+.+|++...... +......+| .+.+|.++
T Consensus 294 ~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s------------------~~~~~epi~--------tfraH~gP 346 (577)
T KOG0642|consen 294 DDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKS------------------AEKDVEPIL--------TFRAHEGP 346 (577)
T ss_pred hhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCc------------------cccceeeeE--------EEecccCc
Confidence 5778889999987 48999999999999998331100 011122333 46799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---------eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---------SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY 565 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---------~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw 565 (707)
|.|+++.+++.++.+|+-|| +|+.|++.... ....+| +|.+.|..+++|+....|++++ ||+||+|
T Consensus 347 Vl~v~v~~n~~~~ysgg~Dg---~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 347 VLCVVVPSNGEHCYSGGIDG---TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW 423 (577)
T ss_pred eEEEEecCCceEEEeeccCc---eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEee
Confidence 99999999999999999999 99999765211 111445 8999999999999999999887 9999999
Q ss_pred ECCCCeEEEEEeC--CCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC-------CCCEEEEEEcCCC
Q 005235 566 DLLKQRLIKKLET--GLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------PKDITNVAFHRSY 635 (707)
Q Consensus 566 Dl~~~~~~~~l~~--~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------~~~I~~vafspdg 635 (707)
+.....+ .++.. ..+...++++-... .+.++...-+.-.++++.+. ..+..+... ...+..|.++|.+
T Consensus 424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~ 501 (577)
T KOG0642|consen 424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTA 501 (577)
T ss_pred ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCC
Confidence 9876655 33322 12345666664333 22222222233344444443 223333211 1347789999999
Q ss_pred CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 636 ~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+.+++..|+.|+++|.. ++. ++.....|... |+++++.|.|++|++++.||.|++|.+
T Consensus 502 ~~~~~~hed~~Ir~~dn~------~~~---~l~s~~a~~~s----vtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 502 DITFTAHEDRSIRFFDNK------TGK---ILHSMVAHKDS----VTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CeeEecccCCceeccccc------ccc---cchheeeccce----ecceeecCCCceEEeecCCceeehhhc
Confidence 999999999999999543 332 36677788887 999999999999999999999999975
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=3.6e-15 Score=155.69 Aligned_cols=263 Identities=15% Similarity=0.126 Sum_probs=204.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
|..++..++.|+.-|.|-.+|+.|+++...+.....|..+.|-.+. .++|++....++|||-...+
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne--q~~AVAQK~y~yvYD~~GtE------------ 202 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE--QFFAVAQKKYVYVYDNNGTE------------ 202 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch--HHHHhhhhceEEEecCCCcE------------
Confidence 6678889999999999999999999999999999999999999887 69999999999999833211
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
. -.+.....|..+.|-|-.-+|++++..| .+...|+++++.. ..| ...+.+
T Consensus 203 -----------------------l-HClk~~~~v~rLeFLPyHfLL~~~~~~G---~L~Y~DVS~GklV-a~~~t~~G~~ 254 (545)
T KOG1272|consen 203 -----------------------L-HCLKRHIRVARLEFLPYHFLLVAASEAG---FLKYQDVSTGKLV-ASIRTGAGRT 254 (545)
T ss_pred -----------------------E-eehhhcCchhhhcccchhheeeecccCC---ceEEEeechhhhh-HHHHccCCcc
Confidence 1 1223356788899999888889998877 9999999999988 888 778888
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
..++-+|-+..+-+|. .|+|.+|.....+++.++.+|.++|++|+++++|.++|+.+.|..|+|||++.-. .+.++..
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t 333 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT 333 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccceeec
Confidence 9999999888888887 8999999999999999999999999999999999999999999999999999763 3333332
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
.-+...++||..|-+ ++|....|.||. |...... ..-...-.|.- +..|.++.|+|-...|-.|-..|
T Consensus 334 -p~~a~~ls~SqkglL--A~~~G~~v~iw~-----d~~~~s~-~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 334 -PHPASNLSLSQKGLL--ALSYGDHVQIWK-----DALKGSG-HGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -CCCccccccccccce--eeecCCeeeeeh-----hhhcCCC-CCCcchhhhcc--CcccccceeccHHHeeeccccCC
Confidence 345678899877743 344556799995 2222110 00111112221 11399999999877665554443
No 191
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.4e-13 Score=147.03 Aligned_cols=239 Identities=10% Similarity=0.068 Sum_probs=156.8
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235 399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
.|.+||...+.......+...+.+.+|+|||+ .|+.++. ...|.+|++.++..
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~----------------------- 235 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV----------------------- 235 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCe-----------------------
Confidence 68899987555443344567899999999994 4554432 23567777654421
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~ 555 (707)
..+....+.+..++|+|+|+.|+......+...|.+||+.++... ........+....|+|+|+.|+
T Consensus 236 ------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 236 ------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred ------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEE
Confidence 112222334556899999999987654332457999999887654 3335556778899999999887
Q ss_pred EEeC--C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCEEE
Q 005235 556 VSTK--K--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 556 v~sd--g--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
.+++ + .|.++|+.++.. ..+........+.+|+|+|++|+..+.+ ..|.+||+.++ . ...+... .....
T Consensus 303 f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~ 378 (429)
T PRK03629 303 YTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDET 378 (429)
T ss_pred EEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCC
Confidence 7663 3 455567776644 3444444456788999999999886654 35888999866 3 3444422 23457
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
..|+|+|.+|+.++.++...++.+. ++... . ...+.+|... +..++|+|-
T Consensus 379 p~~SpDG~~i~~~s~~~~~~~l~~~---~~~G~-~---~~~l~~~~~~----~~~p~Wsp~ 428 (429)
T PRK03629 379 PSIAPNGTMVIYSSSQGMGSVLNLV---STDGR-F---KARLPATDGQ----VKFPAWSPY 428 (429)
T ss_pred ceECCCCCEEEEEEcCCCceEEEEE---ECCCC-C---eEECccCCCC----cCCcccCCC
Confidence 8899999999998888753333221 22221 1 4567777666 889999983
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.58 E-value=2.3e-13 Score=139.82 Aligned_cols=204 Identities=13% Similarity=0.192 Sum_probs=158.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.++|..++|+|-.+..|++++.|.+|.||.+..+..... . ......+.+|...
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-l--------------------------tepvv~L~gH~rr 133 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-L--------------------------TEPVVELYGHQRR 133 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccC-c--------------------------ccceEEEeeccee
Confidence 789999999998877788888899999999876532110 0 0112347799999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
|--|+|||.. +.|++++.|. +|.||++.++... ..+.|...|.++.|+.+|.+|++++ |..|||||.++++.+.
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn---~v~iWnv~tgeal-i~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDN---TVSIWNVGTGEAL-ITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred EEEEeecccchhhHhhccCCc---eEEEEeccCCcee-eecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 9999999954 6788888877 9999999999987 7789999999999999999999988 9999999999999998
Q ss_pred EEeCCCCC-eEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCcce--EEeecCCCCEEEEEEcCCCCEEEEEe-CCCcE
Q 005235 575 KLETGLKE-VSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSKPY--RVLKCHPKDITNVAFHRSYPLFASCS-DDCTA 647 (707)
Q Consensus 575 ~l~~~~~~-I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~~~--~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I 647 (707)
.-.+|.+. -..+.|-.+|..+-+|. .++.+.+||...-..|+ ..+.. +..|.---|.++..++..|+ .|+.|
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcce
Confidence 87776543 34455667788555553 46789999987765554 33333 34566666788888776555 79999
Q ss_pred EEEec
Q 005235 648 YVFHG 652 (707)
Q Consensus 648 ~Vwd~ 652 (707)
+-|.+
T Consensus 289 RYyEi 293 (472)
T KOG0303|consen 289 RYFEI 293 (472)
T ss_pred EEEEe
Confidence 99954
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.6e-13 Score=148.76 Aligned_cols=309 Identities=15% Similarity=0.162 Sum_probs=210.4
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchh-ccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEE-QRRVK 459 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~-~~~~~ 459 (707)
|+.+...++... +..|.||.+.||.|+..+.. ..++..+.+.|... ..+++++.+|.|++|+...+...- ....-
T Consensus 24 fSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 24 FSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred cccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 666666666654 45799999999999998887 88999999988775 356688999999999988764311 11111
Q ss_pred ceeeeccc---------------------ccccCCCCcEEEEecCCccc---eEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235 460 DLLHVETP---------------------TAPDDNMASIVSWLQHDKLD---GIRLRHFKMVSSVEWHRRGDYLSTVMPA 515 (707)
Q Consensus 460 ~v~~~~~~---------------------~~~~~~d~~i~iW~~~~~~~---~~~~~h~~~V~~v~~sp~g~~lat~s~d 515 (707)
.+....+. .......++++-+....... .....|.. -.+|.+++.|.+.+.+-..
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~ 181 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMC 181 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEee
Confidence 11111110 00111111122121111000 01112222 4678888888876665543
Q ss_pred CCccEEEEEECCCCceee--eee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--C--eEEEEEeCCCCCeEEE
Q 005235 516 GESRAIFMHQLSKKLSHR--IPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK--Q--RLIKKLETGLKEVSSI 586 (707)
Q Consensus 516 g~~~~V~Iwdl~~~~~~~--~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~--~--~~~~~l~~~~~~I~sl 586 (707)
.+.+|...++.... ... .|.-.++++++||++.++++|. ||.|.+|.--. . .....+.=|...|+++
T Consensus 182 ----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 182 ----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred ----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 78899888754221 111 5566689999999999999998 89999996332 1 2334566788899999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc
Q 005235 587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP 666 (707)
Q Consensus 587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p 666 (707)
+|+++|.+|++|+..|.+.+|.+.++. .+-|..-.++|..+.+|||+.+.+....|..|.+-++. |+.....+.-
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~---dl~~k~tIsg 332 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS---DLEIKSTISG 332 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc---chhhhhhccC
Confidence 999999999999999999999999884 34466667899999999999999999999999999765 3322222111
Q ss_pred eEEe-----eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 667 LEIL-----RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 667 l~~l-----~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+... ++...- .+.++++|.-..++-.+..|.|.+||+
T Consensus 333 i~~~~~~~k~~~~~l----~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSL----TTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred ccCCCcccccccccc----ceeEEEcCCCCceeecCCCceEEEEec
Confidence 1111 111222 678899998788899999999999985
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.6e-14 Score=142.13 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=144.6
Q ss_pred CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEE--EEeCCC
Q 005235 507 DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIK--KLETGL 580 (707)
Q Consensus 507 ~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~--~l~~~~ 580 (707)
..+|++..+| .|++||..+++.. ..| .+...+..+.|... ...+.+|+ ||+|++||++...... ....+.
T Consensus 41 ~~vav~lSng---sv~lyd~~tg~~l-~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNG---SVRLYDKGTGQLL-EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCC---eEEEEeccchhhh-heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 5678888777 9999999998887 888 88899999999873 44566666 9999999999864433 333343
Q ss_pred -CCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 581 -KEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 581 -~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
.+..|++..-.+..+++|+. +-.|.+||++...+++..+ ..|...|++|.|||..+ +|+|||.||.|.|||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 46788888778888888864 6679999999886655444 58999999999999765 99999999999999765
Q ss_pred cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 005235 654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ-PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg-~~L~s~g~Dg~IrlWdl 707 (707)
.. +.-.++...-.|... |..+.|+..+ +.|.+-+...+..+|++
T Consensus 197 ~d------~EeDaL~~viN~~sS----I~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 197 KD------NEEDALLHVINHGSS----IHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CC------cchhhHHHhhcccce----eeeeeeecCCcceEEEEEccCceeEEEc
Confidence 32 222233334445555 9999999877 45888899999999975
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=8.7e-13 Score=132.59 Aligned_cols=239 Identities=20% Similarity=0.242 Sum_probs=164.3
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
...+++|+.|. .-++++.+.-.+||+.+-...... ...+.+.+.
T Consensus 7 ~~lsvs~NQD~--ScFava~~~Gfriyn~~P~ke~~~----------------------------------r~~~~~G~~ 50 (346)
T KOG2111|consen 7 KTLSVSFNQDH--SCFAVATDTGFRIYNCDPFKESAS----------------------------------RQFIDGGFK 50 (346)
T ss_pred ceeEEEEccCC--ceEEEEecCceEEEecCchhhhhh----------------------------------hccccCchh
Confidence 34569999988 578888888899998754211100 000111111
Q ss_pred EEEEcCCCCEEEEEeCCC----CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEE
Q 005235 499 SVEWHRRGDYLSTVMPAG----ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLI 573 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg----~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~ 573 (707)
-+..--..++||.++..+ ....|.|||-....+. ..+....+|.+|.+.++ .|++...+.|.||.... -+.+
T Consensus 51 ~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i-~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 51 IVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI-IELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLL 127 (346)
T ss_pred hhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE-EEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhhe
Confidence 111111345665544222 3468999997777776 77788899999999865 68888899999999874 4555
Q ss_pred EEEeCCC--CCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCCc-ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EE
Q 005235 574 KKLETGL--KEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSSK-PYRVLKCHPKDITNVAFHRSYPLFASCSDDCT-AY 648 (707)
Q Consensus 574 ~~l~~~~--~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~~-~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~-I~ 648 (707)
+.+..-. ..+.+++-+.+..+||. |-.-|.|.|-|+..... +-..+.+|...|.+++.+.+|.++||||..|+ ||
T Consensus 128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 5554332 33544444434445554 45568999999976522 34788999999999999999999999999996 79
Q ss_pred EEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 649 VFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|||. .++.. +.+++-... ...|.+++|||++.||+.+|.-|+|.||.|
T Consensus 208 IFdt------~~g~~---l~E~RRG~d--~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 208 IFDT------EDGTL---LQELRRGVD--RADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEc------CCCcE---eeeeecCCc--hheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 9954 44444 444442221 123999999999999999999999999975
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.5e-14 Score=147.47 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=146.9
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l 576 (707)
.+++|+.+|..+++++.|| .++||++...... ... .|.+.|.++.|+||+++|++-+....+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg---~lRv~~~Ps~~t~-l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDG---TLRVWEWPSMLTI-LEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccc---eEEEEecCcchhh-hhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhc
Confidence 7899999999999999999 9999998877666 555 9999999999999999999877339999999999776665
Q ss_pred eCCC--CCeEEEEEcCCC---CEE--EEEECCCcEEEEECCCCCc----ceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 577 ETGL--KEVSSIAIHPAG---DNL--IVGSREGKLCWFDMDLSSK----PYRVLKCHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 577 ~~~~--~~I~sl~~spdg---~~L--~sGs~Dg~I~vwDl~~~~~----~~~~l~~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
.... -.+..+.|+.++ .++ +....-+.|..||+..... +......-...|++++.+++|+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 5322 236778888776 332 3333445677777655432 2222222345799999999999999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|-|++.. +.... ...-+.|... |+.+.|+|+.+++++.+.|.++.|..
T Consensus 304 sVai~~~~------~lq~~--~~vk~aH~~~----VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 304 SVAIYDAK------SLQRL--QYVKEAHLGF----VTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cEEEEEec------eeeee--Eeehhhheee----eeeEEEcCCcCcccccccCCceeEEE
Confidence 99999543 22221 2223567766 99999999999999999999888754
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=6e-12 Score=135.44 Aligned_cols=233 Identities=12% Similarity=0.102 Sum_probs=154.1
Q ss_pred CCCCcEEEEE-eCCCcEEEEeCC-CCeE--EEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccccc
Q 005235 385 PVACYLEYKG-STDGTVRIWEVE-SGRC--LRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 385 p~~~~~l~sg-s~DgtVrIWd~~-tg~~--l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
..++.+||.+ ..++.|.+|++. +|.. +......+....|+|+|+++ .+++++ .++.|.+|++........
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~---- 117 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVA---- 117 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCC----
Confidence 3345566655 458899999986 4543 33333355678999999994 455555 478899998753211000
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee------
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR------ 533 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------ 533 (707)
. . ....+...+.+++++|+|+++++++.. .+.|.+|++.+.....
T Consensus 118 ----------------~----------~-~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 118 ----------------P----------I-QIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred ----------------c----------e-eeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCCCcccccCCCc
Confidence 0 0 011222346778999999999776653 2399999997633220
Q ss_pred eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C--eEEEEEeC------CCCCeEEEEEcCCCCEEEEEEC-
Q 005235 534 IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q--RLIKKLET------GLKEVSSIAIHPAGDNLIVGSR- 600 (707)
Q Consensus 534 ~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~--~~~~~l~~------~~~~I~sl~~spdg~~L~sGs~- 600 (707)
..+.....+..++|+|+++++++++ ++.|.+|++.. + +.+.++.. +..+...+.++|+|++|+++..
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 1122344567899999999999887 79999999973 3 33444432 1223457899999999998854
Q ss_pred CCcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 005235 601 EGKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSD-DCTAYVFHG 652 (707)
Q Consensus 601 Dg~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~ 652 (707)
++.|.+|+++....... +.++ ....+.++|+|+|++|+++.. +++|.||++
T Consensus 249 ~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 249 ASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 68899999975432222 2222 124567899999998887664 899999965
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.9e-14 Score=145.75 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=148.5
Q ss_pred EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE
Q 005235 421 QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV 500 (707)
Q Consensus 421 ~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v 500 (707)
.+|+|+++| ..+.+++.||++++|+++..... .....|.+.|.++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~----------------------------------l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTI----------------------------------LEEIAHHAEVKDL 192 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhh----------------------------------hhhHhhcCccccc
Confidence 789999998 47888889999999996553221 1245789999999
Q ss_pred EEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---eccCCCeEEEEEeCCC---CEEEEEe---CCeEEEEECCCCe
Q 005235 501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP---FKLHGLPVSSVFHPTR---SIFFVST---KKNIRVYDLLKQR 571 (707)
Q Consensus 501 ~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~---~~~~~~V~~v~fspd~---~~l~v~s---dg~I~iwDl~~~~ 571 (707)
.|+|+|+.|++.+.+ ..+||+..++... .. +........+.|+.++ .+++.+. .+.|+.|++....
T Consensus 193 ~FS~dgk~lasig~d----~~~VW~~~~g~~~-a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD----SARVWSVNTGAAL-ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred eeCCCCcEEEEecCC----ceEEEEeccCchh-hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 999999999999986 6899999998544 32 2334456677787766 3333332 3778888765421
Q ss_pred -----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 572 -----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 572 -----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
..++.......|++|+++++|++++.|+.||.|.|++...-...+..-+.|...|+.+.|+|+.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 122222333679999999999999999999999999998765555566789999999999999999999999999
Q ss_pred EEEEeccc
Q 005235 647 AYVFHGMV 654 (707)
Q Consensus 647 I~Vwd~~~ 654 (707)
+.|..+.+
T Consensus 348 ~~v~~l~v 355 (398)
T KOG0771|consen 348 AAVTKLAV 355 (398)
T ss_pred eeEEEEee
Confidence 99985543
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.3e-12 Score=145.55 Aligned_cols=212 Identities=12% Similarity=0.117 Sum_probs=145.7
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~ 555 (707)
.+.+|+..+.....+..+...+.+.+|+|+|+.|+..+.......|.+|++.++... ......+.+..++|+|+|+.|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEE
Confidence 455566555544455566778999999999999998775444568999999887653 2224445566789999999888
Q ss_pred EEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-Cc--EEEEECCCCCcceEEeecCCCCEEE
Q 005235 556 VST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GK--LCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 556 v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~--I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
... ++ .|++||+.+++.. .+..+...+...+|+|+|+.|+..+.+ +. |+++|+..+ ....+..+......
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWEGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecCCCCccC
Confidence 653 33 5999999887654 444444567889999999999887764 34 555566544 24455545555678
Q ss_pred EEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc---E
Q 005235 629 VAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV---I 702 (707)
Q Consensus 629 vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~---I 702 (707)
++|+|+|++|+..+.+ + .|.+|+ +.++. ...+.... . .....|+|||.+|+.++.++. +
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~d------l~~g~----~~~Lt~~~-~----~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQD------LATGG----VQVLTDTF-L----DETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEE------CCCCC----eEEeCCCC-C----CCCceECCCCCEEEEEEcCCCceEE
Confidence 9999999988776543 3 467774 33332 23333221 1 456789999999999888765 4
Q ss_pred EEEe
Q 005235 703 RLYC 706 (707)
Q Consensus 703 rlWd 706 (707)
.+++
T Consensus 401 ~~~~ 404 (429)
T PRK03629 401 NLVS 404 (429)
T ss_pred EEEE
Confidence 5554
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=2e-14 Score=158.83 Aligned_cols=258 Identities=16% Similarity=0.189 Sum_probs=200.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKD 460 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~ 460 (707)
|...+.++++|++|..|+||...++.|+....+ .+.|+.++.+.+. ..+++++.|..|++|.+..+.+ .+.+|+..
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 557788999999999999999999999999998 8899999999887 4677788889999999999876 68899999
Q ss_pred eeeeccc-ccccCCCCcEEEEecCCccceE-----EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee
Q 005235 461 LLHVETP-TAPDDNMASIVSWLQHDKLDGI-----RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI 534 (707)
Q Consensus 461 v~~~~~~-~~~~~~d~~i~iW~~~~~~~~~-----~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~ 534 (707)
+.+++|+ .++.+.+|++++|+..-..... .......+.++.|...|..++|++.++ .-..|.+.....
T Consensus 277 vtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~--- 350 (1113)
T KOG0644|consen 277 VTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAW--- 350 (1113)
T ss_pred eeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc---ccccchhhHhhh---
Confidence 9999998 7788899999999986211111 112345677888888999999999988 666666532211
Q ss_pred eeccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCC
Q 005235 535 PFKLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDN-LIVGSREGKLCWFDMDL 611 (707)
Q Consensus 535 ~~~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~ 611 (707)
+...+.-+.++.+- .+.+++- +-.+++|++.++.+++.+.+|...+..|.+||-... ..++++||...|||+-.
T Consensus 351 ---~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 351 ---RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ---hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 11122222222232 2333443 788999999999999999999999999999997754 46789999999999987
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+ .+++...-....+...+||++|..++...+-|.++|+..
T Consensus 428 g-~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 428 G-IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred C-CcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 7 555554433456778899999999988888899998843
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=5e-13 Score=153.45 Aligned_cols=311 Identities=14% Similarity=0.129 Sum_probs=192.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCC-------CeEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC--Cch
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVES-------GRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG--NEE 453 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~--~~~ 453 (707)
.+....+++|||.||+|++|+... .++..++. .++.+.++..++.++ .+++++.||.|.+..++.. ...
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccc
Confidence 445567999999999999999752 24455565 388999999999995 7888899999999998762 110
Q ss_pred hc--------ccccceeeec-cc-------ccccCCCCcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeC
Q 005235 454 EQ--------RRVKDLLHVE-TP-------TAPDDNMASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 454 ~~--------~~~~~v~~~~-~~-------~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
.. ...+.+.++. |. ++.+..-+.+..|+........ .....+.|++++.+|.+++++.|..
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC
Confidence 00 0111122211 11 3445566778888876544322 2234578999999999999999999
Q ss_pred CCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCC---EEEEEe---CCeEEEEECCCCeEEEEEeCCC-C----
Q 005235 515 AGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRS---IFFVST---KKNIRVYDLLKQRLIKKLETGL-K---- 581 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~---~l~v~s---dg~I~iwDl~~~~~~~~l~~~~-~---- 581 (707)
.| .+.+||++-+... ... .+..++..|..+|..+ ..++++ .+.|.+|++.+|.+..++-... .
T Consensus 1216 ~G---~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1216 RG---QLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred Cc---eEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 88 9999999987665 444 6668888888887544 444443 4889999999986666654331 0
Q ss_pred --------------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 582 --------------EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 582 --------------~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
......+.-.+..+++|+.|..|+.||.......-....+.........++-+ .-++.++. .|
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~--~i 1368 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQ--FI 1368 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCc--cc
Confidence 01122233345688999999999999997653321122222222322322221 11222221 11
Q ss_pred EEE--ecccccCC-----CCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q 005235 648 YVF--HGMVYSDL-----NQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYC 706 (707)
Q Consensus 648 ~Vw--d~~~~~Dl-----~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWd 706 (707)
..+ .-....+. .......+...-..|... |+++++... +++|++++.||.|+||.
T Consensus 1369 ~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~----Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1369 DEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP----ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhhhcCchhhcccccccccCCCCCcccccch----hhhhhhhccCccEEEEecCCCeeeecC
Confidence 111 00000000 000011112223456665 999987653 57899999999999994
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.4e-12 Score=145.55 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=152.9
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
..|.+||...+.......+...+.+++|+|||+ .|+.++.. ..|.+|++.++..
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~---------------------- 240 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR---------------------- 240 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE----------------------
Confidence 469999986444433334467899999999994 55555532 3577777654421
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS 552 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~ 552 (707)
..+..+.+...+++|+|+|+.|+.. +.++ ...|.+|++.++... .+ .+.+....++|+|+++
T Consensus 241 -------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-~~~Iy~~d~~~g~~~--~lt~~~~~~~~~~~spDG~ 304 (433)
T PRK04922 241 -------------ELVASFRGINGAPSFSPDGRRLALTLSRDG-NPEIYVMDLGSRQLT--RLTNHFGIDTEPTWAPDGK 304 (433)
T ss_pred -------------EEeccCCCCccCceECCCCCEEEEEEeCCC-CceEEEEECCCCCeE--ECccCCCCccceEECCCCC
Confidence 1222334445678999999988654 4444 458999999887653 44 5555567889999999
Q ss_pred EEEEEeC--C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCC
Q 005235 553 IFFVSTK--K--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 553 ~l~v~sd--g--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
.|+.+++ + .|.++|+.+++.. .+..+.....+++|+|+|++|+..+.++ .|.+||+.++ .+ ..+. +...
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~-~~Lt-~~~~ 380 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SV-RTLT-PGSL 380 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC-Ce-EECC-CCCC
Confidence 8887763 3 4777788776543 3333334456789999999998876543 5999999765 33 3443 3334
Q ss_pred EEEEEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 626 ITNVAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 626 I~~vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
...+.|+|+|++|+..+.+ + .|.+++ +... . ...+..+.+. +..++|+|
T Consensus 381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~------~~g~-~---~~~l~~~~g~----~~~p~wsp 432 (433)
T PRK04922 381 DESPSFAPNGSMVLYATREGGRGVLAAVS------TDGR-V---RQRLVSADGE----VREPAWSP 432 (433)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEE------CCCC-c---eEEcccCCCC----CCCCccCC
Confidence 5678999999987766653 3 455553 3221 1 3444444443 77788887
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=5.2e-13 Score=149.32 Aligned_cols=249 Identities=15% Similarity=0.159 Sum_probs=177.3
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeE--EE-----EEecCCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCC
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRC--LR-----VLEIGEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGN 451 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~--l~-----~l~~~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~ 451 (707)
.+...|.+.++++.|..+|.|.+||+..+.. .. .-.+..+|..+.|..+.. ..+++++.||.|..|++..-.
T Consensus 247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~ 326 (555)
T KOG1587|consen 247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS 326 (555)
T ss_pred EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence 3445577788999999999999999987654 22 222378999999977541 249999999999999865432
Q ss_pred chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCc
Q 005235 452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKL 530 (707)
Q Consensus 452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~ 530 (707)
.......... .........-...+++++|.+. -..|++|+..| .|.--.-....
T Consensus 327 ~P~e~~~~~~----------------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G---~v~~~~r~g~~ 381 (555)
T KOG1587|consen 327 LPVEGLLLES----------------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG---KVYKGCRKGYT 381 (555)
T ss_pred cchhhccccc----------------------ccccccccccccceeeEeeccCCCceEEEEcCCc---EEEEEeccCCc
Confidence 2111000000 0000011123456789999884 45678888877 55553332222
Q ss_pred eee-------eee-ccCCCeEEEEEeCCCCEEEEE-eCCeEEEEECC-CCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235 531 SHR-------IPF-KLHGLPVSSVFHPTRSIFFVS-TKKNIRVYDLL-KQRLIKKLETGLKEVSSIAIHPAG-DNLIVGS 599 (707)
Q Consensus 531 ~~~-------~~~-~~~~~V~~v~fspd~~~l~v~-sdg~I~iwDl~-~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs 599 (707)
... ..+ .|.+.|.++.++|-+..++.+ +|.+|+||... ...++..+..+...+++++|||.. ..|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 221 233 788999999999987665554 49999999987 667777777777789999999976 5678888
Q ss_pred CCCcEEEEECCCC-CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 600 REGKLCWFDMDLS-SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 600 ~Dg~I~vwDl~~~-~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.||.|.+||+... ..|+.+...+....+.+.|++.|++|+.|...|+|++|++.
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 8999999999653 25666666667778889999999999999999999999653
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.7e-14 Score=148.24 Aligned_cols=276 Identities=16% Similarity=0.207 Sum_probs=199.5
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
-|...+..+++||+|..|.+||+.++.....+.. ...|..-.|-|. +...+++++.||.|++=.+...
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t--------- 219 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET--------- 219 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc---------
Confidence 4888899999999999999999999988877766 445555556664 2247888899999887543221
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
+...++ ..+..|.+.|..++.-|.. .-|.+++.|+ .+.-.|++..... ..+
T Consensus 220 -----------~~~e~t-----------~rl~~h~g~vhklav~p~sp~~f~S~geD~---~v~~~Dlr~~~pa-~~~~c 273 (559)
T KOG1334|consen 220 -----------GYVENT-----------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDA---VVFHIDLRQDVPA-EKFVC 273 (559)
T ss_pred -----------cceecc-----------eecccccCccceeeecCCCCCccccccccc---ceeeeeeccCCcc-ceeee
Confidence 001111 1245899999999998865 4588888888 8988998877654 333
Q ss_pred --ccCC---CeEEEEEeCCCC-EEEEEe-CCeEEEEECCCC------eEEEEEeCC------CCCeEEEEEcCCCCEEEE
Q 005235 537 --KLHG---LPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQ------RLIKKLETG------LKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 537 --~~~~---~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~------~~~~~l~~~------~~~I~sl~~spdg~~L~s 597 (707)
.... ....++.+|... .+++++ |..+++||.+.- ..+.++..+ .-.|+|++|+.+|.-|++
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 2222 456888899776 577776 899999998642 123333322 234999999988877777
Q ss_pred EECCCcEEEEECCCCC-----------cceE-EeecCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEecccccCCCCCC
Q 005235 598 GSREGKLCWFDMDLSS-----------KPYR-VLKCHPK--DITNVAF-HRSYPLFASCSDDCTAYVFHGMVYSDLNQNP 662 (707)
Q Consensus 598 Gs~Dg~I~vwDl~~~~-----------~~~~-~l~~h~~--~I~~vaf-spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~ 662 (707)
.-.|-.|++|.-..+. ..++ .+++|.. .|..|-| -|...+++|||+-|.|.|| +-.++.
T Consensus 354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW------~K~t~e 427 (559)
T KOG1334|consen 354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW------DKKTGE 427 (559)
T ss_pred eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEE------ecchhH
Confidence 7778889999544321 1122 3678864 4777765 6788899999999999999 444444
Q ss_pred cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
. +..+.|.... |+||.=||.-+.|||+|-|.-|+||.
T Consensus 428 i---i~~MegDr~V----VNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 428 I---IRFMEGDRHV----VNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred H---HHHhhcccce----EeccCCCCCCchhhccCCccceeeec
Confidence 4 4555665555 99999999999999999999999995
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=2.5e-13 Score=140.12 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=137.9
Q ss_pred cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
...+|.++.|.++....+++++.|..|++|-+..+... ..+..|. ....+..|..
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~-------y~s~Ls~H~~ 66 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVE-------YLSSLSRHTR 66 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEE-------EeecccCCcc
Confidence 46789999999988547889999999999998765321 1111111 1234678999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECC--------C-----C-ce-eeeee-ccCCCeEEEEEeCCCCEEEEEe-
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS--------K-----K-LS-HRIPF-KLHGLPVSSVFHPTRSIFFVST- 558 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~--------~-----~-~~-~~~~~-~~~~~V~~v~fspd~~~l~v~s- 558 (707)
.|++|.|+|+|+.||+|+.+| .|.+|... + . .. ....+ .|...|..++|+|++.++++++
T Consensus 67 aVN~vRf~p~gelLASg~D~g---~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGG---EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCc---eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 999999999999999999988 99999876 2 1 11 11334 7888999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
|+.+++||+..|.+...+..|...+..++|.|-+.++++-+.|...+.+++..
T Consensus 144 dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 99999999999999999999999999999999999999999999888887754
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=3.7e-13 Score=142.94 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=125.2
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-------
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK------- 569 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~------- 569 (707)
+.|--++.+-..| .|.+.|....... ..| -.+..|+|+.|-|.+..++.+. +|.+.+||..-
T Consensus 183 ~~g~dllIGf~tG---qvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 183 PKGLDLLIGFTTG---QVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCcceEEeeccC---ceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 4566667777666 7777776553222 222 2347899999999766555443 89999997621
Q ss_pred -------Ce--------------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235 570 -------QR--------------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 570 -------~~--------------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
+. ++..+.-..+.|..++|+|||.+||+.|.||.++|||..+. .++..++..-+...|
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLC 337 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEE
Confidence 11 11222223456889999999999999999999999999876 667777777788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
|+|||||++|++|+.|--|.|| .+..... +..-.||..+ |..|+|.|
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVw------Sf~erRV---VARGqGHkSW----Vs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVW------SFEERRV---VARGQGHKSW----VSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEE------EeccceE---EEeccccccc----eeeEeecc
Confidence 9999999999999999999999 4444444 7777899998 99999983
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=4e-13 Score=134.96 Aligned_cols=209 Identities=15% Similarity=0.196 Sum_probs=160.2
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
...+|+|.+|++++..+|++..+. .|.||.......- ..++ .|...|+++.|+|..+.|++++ |+.-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~---evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNH---EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCc---eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 457899999999999999998866 9999998877632 1556 8999999999999999999988 9999999984
Q ss_pred C-C--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc---ceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 569 K-Q--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK---PYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 569 ~-~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~---~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
. + ++.-.|..+....+++.|+|.++.||+||..+.|.||-++..+. ...+-+.+...|+++.|||++-+||+||
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 3 44445666778899999999999999999999999998875421 1122335678899999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCccc------ceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 643 DDCTAYVFHGMVYSDLNQNPLIV------PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 643 ~Dg~I~Vwd~~~~~Dl~~~~~~~------pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
.|+..+||.+-+. ++.+.+... |...|-..-...+.+|..+.|+|.|..|+-.+.|++|.+=
T Consensus 166 ~D~k~rVfSayIK-~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 166 TDGKCRVFSAYIK-GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cCcceeEEEEeee-ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9999999965422 222222111 1222211111223459999999999999999999998763
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.6e-12 Score=139.88 Aligned_cols=204 Identities=12% Similarity=0.125 Sum_probs=140.3
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
..|.+||...+.......+...+.+++|+|||+ .|+.++. +..|.+|++.++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~----------------------- 237 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQ----------------------- 237 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCc-----------------------
Confidence 378889975544433334477899999999994 5555543 3467777765542
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
...+..+.+.+.+.+|+|+|+.|+..........|.++++.++... .+ .+.+......|+|+|..
T Consensus 238 ------------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~--~Lt~~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 238 ------------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT--RLTDSPAIDTSPSYSPDGSQ 303 (435)
T ss_pred ------------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE--EccCCCCccCceeEcCCCCE
Confidence 1223345566778899999998875543332457888899887653 45 55566778999999998
Q ss_pred EEEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCE
Q 005235 554 FFVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDI 626 (707)
Q Consensus 554 l~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I 626 (707)
|+.+++ ..|.++|+..+.. +.+..+...+....|+|+|+.|+..+.+ ..|.+||+..+ ....+. ....+
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~ 379 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLV 379 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCC
Confidence 887663 3688889876654 3444444557778999999999887654 35888888644 234443 23357
Q ss_pred EEEEEcCCCCEEEEEeC
Q 005235 627 TNVAFHRSYPLFASCSD 643 (707)
Q Consensus 627 ~~vafspdg~llaSgs~ 643 (707)
..+.|+|+|+.|+..+.
T Consensus 380 ~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCeECCCCCEEEEEEc
Confidence 78999999998776554
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.5e-12 Score=143.66 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
.+.+|+..+.....+..+...+.+.+|+|+|++|+.++..+....|.+|++.++... .+ ...+...++.|+|+|+.|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEE
Confidence 355566555444455667778999999999999999886654568999999887653 33 445566688999999987
Q ss_pred EEE-e-CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCc--EEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVS-T-KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGK--LCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~-s-dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~--I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+.+ + ++ .|++||+.+++. ..+..+.....+++|+|+|+.|+.++. +|. |+++|+.++ . .+.+..+.....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S-AERLTFQGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEEeecCCCCcc
Confidence 654 3 43 699999988764 345555455678899999999988764 444 666676654 2 333443444456
Q ss_pred EEEEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC-C--c
Q 005235 628 NVAFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-S--V 701 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-g--~ 701 (707)
.++|||+|+.|+..+.++ .|.+|+. .++. ...+... .. ...+.|+|+|++|+.++.+ + .
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~------~~g~----~~~Lt~~-~~----~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDL------STGS----VRTLTPG-SL----DESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEEC------CCCC----eEECCCC-CC----CCCceECCCCCEEEEEEecCCceE
Confidence 789999999888765443 5888853 3332 2233322 12 5567999999988766643 3 4
Q ss_pred EEEEe
Q 005235 702 IRLYC 706 (707)
Q Consensus 702 IrlWd 706 (707)
|.+++
T Consensus 405 L~~~~ 409 (433)
T PRK04922 405 LAAVS 409 (433)
T ss_pred EEEEE
Confidence 55554
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.5e-12 Score=141.70 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=144.3
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
.+.+|+..+.....+..|...+.+.+|+|+|+.|+.++..+....|.+|++.++... .+ ...+.+.+.+|+|+|..|
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECCCCCEE
Confidence 455666655555556678889999999999999999886554569999999887653 44 566677889999999987
Q ss_pred EEE-e-C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVS-T-K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~-s-d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+.+ + + ..|.+||+.++.. ..+..+.....+.+|+|+|+.|+..+. +| .|+++|+..+ . .+.+..+...+.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~ 337 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYS 337 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-C-eEEeecCCCccc
Confidence 654 3 4 4588889987765 456556556778999999999988774 33 5888887654 3 445554556677
Q ss_pred EEEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 628 NVAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 628 ~vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
.+.|+|+|+.|+..+.+ + .|.+|+ +.... ...+.. ... +..+.|+|+|++|+..+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d------~~~~~----~~~lt~-~~~----~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMK------PDGSG----ERILTS-GFL----VEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEE------CCCCc----eEeccC-CCC----CCCCeECCCCCEEEEEEc
Confidence 88999999998877644 2 466664 32222 222321 112 677899999999876654
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-11 Score=119.47 Aligned_cols=269 Identities=14% Similarity=0.143 Sum_probs=183.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCC---------Ce-EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 387 ACYLEYKGSTDGTVRIWEVES---------GR-CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~t---------g~-~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
...+++.|+.+|+|.+..+.+ |+ .+...+. +++|..++|..+ ++.++.||.|+-|........
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gdG~V~gw~W~E~~es-- 94 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGDGLVYGWEWNEEEES-- 94 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccCceEEEeeehhhhhh--
Confidence 345899999999999998753 22 2223333 899999999933 455566699999987654221
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
.+.-.+|.+......- .-.--.|+++...|..+-+++++.|+ .++-||+.+++.+ +.
T Consensus 95 ------------------~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~---~~y~~dlE~G~i~-r~ 151 (325)
T KOG0649|consen 95 ------------------LATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDG---VIYQVDLEDGRIQ-RE 151 (325)
T ss_pred ------------------ccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCe---EEEEEEecCCEEE-EE
Confidence 1222345433221110 11123678899999888787777777 9999999999999 99
Q ss_pred e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC----------CCCeEEEEEcCCCCEEEEEECCCc
Q 005235 536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG----------LKEVSSIAIHPAGDNLIVGSREGK 603 (707)
Q Consensus 536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~----------~~~I~sl~~spdg~~L~sGs~Dg~ 603 (707)
| +|..-|.+++--.....+++|+ ||++|+||+++++.++.+... ..||.+++.+ .+.|++|+. ..
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-Cc
Confidence 9 9999999999866666788877 999999999999998887531 2567777775 568888764 57
Q ss_pred EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235 604 LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD 683 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~ 683 (707)
+.+|.++.. .+..++. -.+.+..|.|-. ..+++++....|.-|... +.+ ....--+|. +.++
T Consensus 229 lslwhLrss-e~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-------Gvl--~a~ip~~s~-----~c~s 290 (325)
T KOG0649|consen 229 LSLWHLRSS-ESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-------GVL--QANIPVEST-----ACYS 290 (325)
T ss_pred eeEEeccCC-CceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec-------cEE--EEeccCCcc-----ceee
Confidence 999999976 6676665 356688888853 467778877788888321 100 011111222 2555
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEE
Q 005235 684 CKFHPR-QPWLFTAGADSVIRLY 705 (707)
Q Consensus 684 l~fspd-g~~L~s~g~Dg~IrlW 705 (707)
..|+-. -++|-.+|..+.+.|+
T Consensus 291 ~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 291 ASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ecccCCceEEEEecccceeeeee
Confidence 555432 2355666777777665
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.9e-12 Score=130.09 Aligned_cols=202 Identities=17% Similarity=0.172 Sum_probs=153.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.++|+|.+|++|+ ..++++.....|.||....... |. ....+..|...
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~---------------------------w~----~~htls~Hd~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADL---------------------------WE----PAHTLSEHDKI 57 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCC---------------------------ce----eceehhhhCcc
Confidence 6899999999999 3555556666899888654321 10 11235689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL 572 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~ 572 (707)
|+.|+|+|.++.|++++.|. .-++|.... +.-.. ..+ .++..+++|.|+|..+.|++|+ .+.|.||-+....-
T Consensus 58 vtgvdWap~snrIvtcs~dr---nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd 134 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDR---NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND 134 (361)
T ss_pred eeEEeecCCCCceeEccCCC---CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence 99999999999999999987 889999943 33321 233 8999999999999999999998 68888887765421
Q ss_pred E----EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-----CC--------C----cceEEeecCCCCEEEEEE
Q 005235 573 I----KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD-----LS--------S----KPYRVLKCHPKDITNVAF 631 (707)
Q Consensus 573 ~----~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~-----~~--------~----~~~~~l~~h~~~I~~vaf 631 (707)
- ..-..+...|++++|||++-+|++||.|+.++||..- .. . .++..+....+.|..+.|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 1 1112445679999999999999999999999999742 10 0 122333345678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecc
Q 005235 632 HRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 632 spdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+|+|..||-.+.|++|.+-|..
T Consensus 215 s~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCCEeeEecCCCceEEeecC
Confidence 9999999999999999998654
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.50 E-value=5.7e-13 Score=141.21 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=163.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
...++.++.||.+.|-+ ..|+.-+.+.. .+.|.|-.|+|+| .-|++++.||.|++|.-.
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs------------------ 134 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS------------------ 134 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc------------------
Confidence 35677889999998887 45666666665 7899999999999 579999999998888722
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
+-....+.....+|.|++|.|+.+-++.+..+ .+.|--+...... ... .|.+-|.++
T Consensus 135 -----------------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~----h~~IKpL~~n~k~-i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 135 -----------------GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG----HISIKPLAANSKI-IRWRAHDGLVLSL 192 (737)
T ss_pred -----------------chHHHHHhhcCceeEEEEECCCCCceEEecCC----eEEEeecccccce-eEEeccCcEEEEe
Confidence 11222344567889999999998877666532 7888777766554 555 899999999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
.|++...++++|+ |-..+|||-. |+.+..-..|..+|++++|.|+ ..+++||+. ++++ . ....+
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---~---------~p~~G 257 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---S---------SPRVG 257 (737)
T ss_pred ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeee---c---------CCCcc
Confidence 9999999999999 8999999965 6667677788899999999999 777888764 4441 1 12357
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
.|..++||+||..++.|+..|.+.+=++
T Consensus 258 SifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 258 SIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ceEEEEEcCCCceeeccccCceEEEeee
Confidence 7999999999999999999998776554
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.8e-12 Score=142.89 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=138.2
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
.+.+++..+.....+..+...+.+.+|+|+|+.|+.++.......|.+||+.++... .+ ...+.+.+.+|+|+|..|
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEE
Confidence 344555544444445567788999999999999998886554568999999988654 34 455667789999999988
Q ss_pred EEE-e-CCeEEE--EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 555 FVS-T-KKNIRV--YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 555 ~v~-s-dg~I~i--wDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
+.+ + ++...| +|+..+. ...+..+.....+.+|+|||+.|+..+. +|...||.++........+..+.......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~ 333 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSP 333 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCce
Confidence 754 4 565454 4555544 4555555555678899999999887665 45666665543222233333333445568
Q ss_pred EEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 630 AFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 630 afspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
+|||+|++|+.++.++ .|.+|++ .++. ...+..+. . ...+.|+|+|+.|+.++.++
T Consensus 334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~------~~g~----~~~lt~~~-~----~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 334 RISPDGKLLAYISRVGGAFKLYVQDL------ATGQ----VTALTDTT-R----DESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEEC------CCCC----eEEccCCC-C----ccCceECCCCCEEEEEEecC
Confidence 9999999998777654 5888854 3332 22333221 2 56789999999987776544
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.9e-12 Score=140.92 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=146.8
Q ss_pred CcEEEEeCCCCeEEEEE-ecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 398 GTVRIWEVESGRCLRVL-EIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
..|.+||.. |...+.+ .....+.+.+|+|||. .|+.++.. ..|.+||+.++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~--------------------- 232 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR--------------------- 232 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE---------------------
Confidence 457777764 4443333 4477899999999994 55555432 3477777655421
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR 551 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~ 551 (707)
..+....+.+.+.+|+|+|+.|+.. +.++ ...|.++++..+.. ..+ .+.+......|+|+|
T Consensus 233 --------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 233 --------------RVVANFKGSNSAPAWSPDGRTLAVALSRDG-NSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred --------------EEeecCCCCccceEECCCCCEEEEEEccCC-CceEEEEECCCCCc--EECCCCCCCCcCeEEcCCC
Confidence 1222334556789999999988754 5555 34566666665543 445 555566778999999
Q ss_pred CEEEEEe--CCeEEEE--ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCC
Q 005235 552 SIFFVST--KKNIRVY--DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 552 ~~l~v~s--dg~I~iw--Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
+.|+..+ ++...|| ++.++... .+..........+|+|+|++|+..+.++ .|.+||+.++ . .+.+..+ .
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~~-~ 371 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTDT-T 371 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-C-eEEccCC-C
Confidence 9887666 3555555 44555432 2322223455689999999998877654 5999999876 3 3344322 3
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 625 DITNVAFHRSYPLFASCSDDC-TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg-~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
....++|+|+|+.|+.++.++ .-.++-+ ++. +.. ...+..+.+. +...+|+|-
T Consensus 372 ~~~~p~~spdg~~l~~~~~~~g~~~l~~~----~~~-g~~---~~~l~~~~g~----~~~p~wsp~ 425 (427)
T PRK02889 372 RDESPSFAPNGRYILYATQQGGRSVLAAV----SSD-GRI---KQRLSVQGGD----VREPSWGPF 425 (427)
T ss_pred CccCceECCCCCEEEEEEecCCCEEEEEE----ECC-CCc---eEEeecCCCC----CCCCccCCC
Confidence 457889999999888777554 3333322 221 211 3445455444 788889874
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=5.7e-13 Score=141.55 Aligned_cols=190 Identities=13% Similarity=0.195 Sum_probs=136.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
-+..|-.-|.|.+.|.......+.+.. ...|+|+.|-|.++..++++-.+|.++++|.....
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------------- 253 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------------- 253 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------------
Confidence 455666777788887655222211211 57899999999987788888899999999852110
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
...-.+-...+++..|+....-+ ..+.... ... ...+.|.
T Consensus 254 -----------------------------~~t~p~~~~~k~~~~f~i~t~ks---------k~~rNPv-~~w~~~~g~in 294 (636)
T KOG2394|consen 254 -----------------------------GATAPSYQALKDGDQFAILTSKS---------KKTRNPV-ARWHIGEGSIN 294 (636)
T ss_pred -----------------------------cCCCCcccccCCCCeeEEeeeec---------cccCCcc-ceeEecccccc
Confidence 00001111234555554433211 0000111 223 3456889
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
..+|+|||++|++.+ ||.+||||..+++++..++.--+...|++|||||++|++|+.|-.|.||.+... +.+..-++|
T Consensus 295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGH 373 (636)
T KOG2394|consen 295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGH 373 (636)
T ss_pred ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEecccc
Confidence 999999999999988 999999999999887777666677999999999999999999999999999876 788888999
Q ss_pred CCCEEEEEEc
Q 005235 623 PKDITNVAFH 632 (707)
Q Consensus 623 ~~~I~~vafs 632 (707)
..+|..|+|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 9999999998
No 217
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=8.7e-13 Score=141.91 Aligned_cols=204 Identities=19% Similarity=0.251 Sum_probs=158.5
Q ss_pred eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee-----eee-ccCCCeEEEEEeCCCC-EEEEEeC
Q 005235 488 GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR-----IPF-KLHGLPVSSVFHPTRS-IFFVSTK 559 (707)
Q Consensus 488 ~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-----~~~-~~~~~V~~v~fspd~~-~l~v~sd 559 (707)
..+.+|...|+.+.|+| ...+||+++.|. .|+||.+.++..+. ..+ ...-.|.++.|||... +|+++..
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~---~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDE---PVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCC---eeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 45778999999999999 455789999988 99999999766542 223 3445788999999765 4555568
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEE
Q 005235 560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLF 638 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~ll 638 (707)
|+++|||+.+++.+..+.+|..-|.++.|+.||.+|++.+.|+.|+|||.+....++++..+|.+. =..|.|.-+-..|
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999999999999999999999999999999988999999999753 2346776554455
Q ss_pred EEEeCC----CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q 005235 639 ASCSDD----CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLY 705 (707)
Q Consensus 639 aSgs~D----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlW 705 (707)
++.+-+ ..|++||.+.++ .|+.++.-.... ||.---|.||..+|+-+|. +.+|..+
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~--------~p~~tleld~st---GvLiPl~DpDt~llfLaGKG~~~l~~l 290 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFG--------APVHTLELDSST---GVLIPLYDPDTRLLFLAGKGTNKLFML 290 (1012)
T ss_pred hhcccchhhheeeeeeeccccC--------CcceeEEeeccc---ceEeeeecCCCceEEEecCCcceEEEE
Confidence 555433 479999776554 245555544432 5888889999998877763 4444443
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=3.4e-11 Score=121.28 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=126.8
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCC
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRS 552 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~ 552 (707)
.+.+||-............++|.+|.+.++ .++++-. +.|.||.....-.+...+ .....+.+++-+.+..
T Consensus 76 kviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~----~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE----NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred eEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec----CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 455555333333345567889999999754 5666654 289999998543332555 2122344444333444
Q ss_pred EEEEEe--CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCCcceEEeecC--CCC
Q 005235 553 IFFVST--KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSSKPYRVLKCH--PKD 625 (707)
Q Consensus 553 ~l~v~s--dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~~~~~~l~~h--~~~ 625 (707)
+|+.-+ -|.|+|-|+...+. ...+.+|...|.|++++-+|..||++|..|+ |+|||..++ .+++.++.. ...
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRAD 228 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchhe
Confidence 555544 49999999987654 4678899999999999999999999999998 699999988 667777633 357
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
|.+++|||+..+||++|+-|+|+||.+..
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999999997764
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=2.5e-13 Score=150.27 Aligned_cols=261 Identities=13% Similarity=0.155 Sum_probs=194.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccc-e
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD-G 488 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~ 488 (707)
-.+|.|+.|...| .++++++.|..|+||...++.. .+.+|...+...+.+ +++++.|..|++|.+..+.. .
T Consensus 190 ~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs 268 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS 268 (1113)
T ss_pred hhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH
Confidence 5789999999999 6899999999999999888754 567788888887776 78899999999999987655 4
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
++.+|++.|++++|+|-. +.+.|| ++++||.+-.... ..++ .....+.++.|-.++..+++++ ++.-+
T Consensus 269 vLrghtgavtaiafsP~~----sss~dg---t~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 269 VLRGHTGAVTAIAFSPRA----SSSDDG---TCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred HHhccccceeeeccCccc----cCCCCC---ceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 588999999999999965 667777 9999998721111 0233 3456677888888888888888 78888
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE-EEE
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-ASC 641 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-aSg 641 (707)
.|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++.++ ...+.+.+|...+..+.+||-.+.+ .++
T Consensus 342 n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 342 NHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 77654211 11111111111111 245666777888999999988 7788899999999999999987754 589
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+.||.+.||| +..+..+ -.-+.+|.. +.+..||++|..++....-|.+.|.
T Consensus 415 g~dgst~iwd------i~eg~pi--k~y~~gh~k-----l~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 415 GYDGSTIIWD------IWEGIPI--KHYFIGHGK-----LVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCceEeee------cccCCcc--eeeecccce-----eeccccCCCCceEecCCCCCceEEe
Confidence 9999999995 4444322 122355654 8889999999988877777777765
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.7e-12 Score=143.49 Aligned_cols=244 Identities=15% Similarity=0.194 Sum_probs=164.6
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
+...+.|+|=.. .++++.....|+|||.+.+...-..++ -......|+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n-------------------------------~~~~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN-------------------------------GAFPDTRVS 1113 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC-------------------------------CCCCCCccc
Confidence 455677777763 455555567888888766532110000 002245677
Q ss_pred EEEEcC--CCCEEEEEeCCCCccEEEEEECCCCc-----eeeeee--------ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 499 SVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKL-----SHRIPF--------KLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 499 ~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~-----~~~~~~--------~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.+.+-. +...+++++.|| .|+||+--... .. ..+ ...+.-.-+.|.....+|++++ -+.|
T Consensus 1114 ~l~liNe~D~aLlLtas~dG---vIRIwk~y~~~~~~~eLV-Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDG---VIRIWKDYADKWKKPELV-TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred eeeeecccchhheeeeccCc---eEEEecccccccCCceeE-EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 777754 445788999988 99999743221 11 111 1112223456766666677666 5899
Q ss_pred EEEECCCCeEEEEEeCCC-CCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCC--cceEEeecCCCC--EEEEEEcCCCC
Q 005235 563 RVYDLLKQRLIKKLETGL-KEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKD--ITNVAFHRSYP 636 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~-~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~--I~~vafspdg~ 636 (707)
||||+.+..++..+.... ..|+++.-+ +.|+.|++|..||.|++||.+... .++...+.|+.. |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 999999888777766443 346776543 347999999999999999998754 367888899887 99999999776
Q ss_pred -EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 637 -LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 637 -llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
-|++||.||.|++||++. ......+ .+..|... +..++++..|++.+.||||++ +.|+||++
T Consensus 1270 ~elvSgs~~G~I~~~DlR~------~~~e~~~-~iv~~~~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRM------SSKETFL-TIVAHWEY-GSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cceeeeccCCeEEEEeccc------Ccccccc-eeeecccc-CccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 499999999999996653 2211112 22333211 112899999999999999999 99999985
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8.3e-12 Score=121.12 Aligned_cols=237 Identities=15% Similarity=0.145 Sum_probs=163.2
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce-EEeccCCCe
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG-IRLRHFKMV 497 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V 497 (707)
.|.+-+|+|.+ ..++++...|+|.++.+....... +... ++... ...+|.++|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~s----------------a~~~---------gk~~iv~eqahdgpi 65 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGS----------------AEPP---------GKLKIVPEQAHDGPI 65 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccc----------------cCCC---------CCcceeeccccCCCe
Confidence 45667899998 478888899999999876532110 0011 11111 246899999
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee-------e--eee----ccCCCeEEEEEeCCCC-EEEEEeCCeEE
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH-------R--IPF----KLHGLPVSSVFHPTRS-IFFVSTKKNIR 563 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~-------~--~~~----~~~~~V~~v~fspd~~-~l~v~sdg~I~ 563 (707)
..++|+ ..+|++++. | .|+-|..+..... . .+. -.-..|+++...|... .|++|+|+.++
T Consensus 66 y~~~f~--d~~Lls~gd-G---~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 66 YYLAFH--DDFLLSGGD-G---LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred eeeeee--hhheeeccC-c---eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence 999998 456666664 6 8998887543220 0 112 1123688899998654 45555699999
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---------C-CCCEEEEEEcC
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---------H-PKDITNVAFHR 633 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---------h-~~~I~~vafsp 633 (707)
.||+.+|+..+.+.+|...|.+++--.....+++|+.||++++||++++ +.++++.. | ...|-+++-+
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~- 217 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN- 217 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc-
Confidence 9999999999999999999999998666678999999999999999987 66665542 2 2346666654
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..+|++|+ .-.+.+||++.. .. .++..+.+| |..+.|.. ..++++|..+.|.-|.+
T Consensus 218 -edWlvCGg-Gp~lslwhLrss------e~-t~vfpipa~-------v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 218 -EDWLVCGG-GPKLSLWHLRSS------ES-TCVFPIPAR-------VHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred -CceEEecC-CCceeEEeccCC------Cc-eEEEecccc-------eeEeeeec--ceEEEeccccceeeeee
Confidence 45676554 557999976522 11 234455565 77888854 46777877767776653
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=3.6e-12 Score=131.31 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=165.6
Q ss_pred CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhc--------ccccceeeeccc---ccccCCCCcEEEEecCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQ--------RRVKDLLHVETP---TAPDDNMASIVSWLQHD 484 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~--------~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~ 484 (707)
...|.+++|.-+++..++.+. .+..+..+.+........ .....+...... +.++..+|.+.+|....
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccC
Confidence 456777777777766666665 555565555444322111 111111111111 56667788888888763
Q ss_pred ccc----eEEeccCCCeEEEEEcCCCCEEEE-EeCCCCccEEEEEECCCCceeeeee----------ccCCCeEEEEEeC
Q 005235 485 KLD----GIRLRHFKMVSSVEWHRRGDYLST-VMPAGESRAIFMHQLSKKLSHRIPF----------KLHGLPVSSVFHP 549 (707)
Q Consensus 485 ~~~----~~~~~h~~~V~~v~~sp~g~~lat-~s~dg~~~~V~Iwdl~~~~~~~~~~----------~~~~~V~~v~fsp 549 (707)
+.. .........+..|.-++...+|++ |+... ...+.|||+...... ..- ...-.++++.|-+
T Consensus 135 ~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~-~n~lkiwdle~~~qi-w~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 135 GDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN-INELKIWDLEQSKQI-WSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CccccccceeeecCCceeeeccCCCCCceEecCchhc-ccceeeeecccceee-eeccCCCCccccceeeeeeccceecC
Confidence 321 112233356666777776665554 66552 348999999887332 111 1123577889988
Q ss_pred C--CCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 550 T--RSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 550 d--~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
. ...|++++ -++||+||.+.| +++.++.....+|+++...|+|++|++|..-|.+..||++.+..+...+.+..+.
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 7 77888888 699999999986 6888888888899999999999999999999999999999874444458889999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
|+++..||.++++|+||-|..|||+|+.
T Consensus 293 irsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 293 IRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cceEEEcCCCceEEeeccceeEEEeecc
Confidence 9999999999999999999999999543
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=9.8e-14 Score=145.07 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=169.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~ 575 (707)
....+.++.+|.+|+.++..| .|..+|+.+.... ..+.....|..+.|-.+..+|+++....++|||- .|..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~L~-~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKG---HLAAFDWVTKKLH-FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCcc---ceeeeecccceee-eeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEee
Confidence 457789999999999999988 9999999999887 7777788899999999999999999999999995 4767777
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 576 LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 576 l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
+..+ ..|..+.|-|---+|++++..|.+..-|+.++ +.+..+....+.+..++-+|-.-.+-+|...|+|.+|.-
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP--- 280 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP--- 280 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC---
Confidence 7766 67899999999889999999999999999988 778888888899999999999999999999999999942
Q ss_pred cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
... .|+..+-.|.+. |.++++.++|.+++|+|.|..|+||||
T Consensus 281 ---~sk---ePLvKiLcH~g~----V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 281 ---NSK---EPLVKILCHRGP----VSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred ---CCc---chHHHHHhcCCC----cceEEECCCCcEEeecccccceeEeee
Confidence 211 245566778887 999999999999999999999999996
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=7.8e-12 Score=133.90 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=176.0
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc------eeeeccc-ccccCCCCcEEEEecCCccceE
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD------LLHVETP-TAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~------v~~~~~~-~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
...-+.|..+|||+..++++..--.|++||+..-......|.+. +++-.++ .+.-.+|..|.+....+.....
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~ 130 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT 130 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence 66778999999996434444466799999988765444333221 1111111 1122223333332221111111
Q ss_pred EeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 490 RLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
.-...-..++++. ..+.++.|+. . .|+-++|..++.. .+| ...+.++++..++-..+|++|+ +|.|-.||
T Consensus 131 --RIP~~GRDm~y~~~scDly~~gsg-~---evYRlNLEqGrfL-~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 131 --RIPKFGRDMKYHKPSCDLYLVGSG-S---EVYRLNLEQGRFL-NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred --ecCcCCccccccCCCccEEEeecC-c---ceEEEEccccccc-cccccccccceeeeecCccceEEecccCceEEEec
Confidence 1122234566654 3344444442 2 7888999999988 999 5568999999999999999999 89999999
Q ss_pred CCCCeEEEEEeCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCC
Q 005235 567 LLKQRLIKKLETGL-----------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRS 634 (707)
Q Consensus 567 l~~~~~~~~l~~~~-----------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspd 634 (707)
.++...+.++.... ..|+++.|+.+|-.+++|+.+|.|.|||+++. +|+..- .+..-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccceeeeccccc
Confidence 99877666665322 23999999999999999999999999999987 555322 233468999999876
Q ss_pred --CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 635 --YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 635 --g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
.+.++|+ +...++|||- .++.. ...+..-. .++++++-|++-.+++|-.++.+..|
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~------~~Gk~---~asiEpt~-----~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDE------CTGKP---MASIEPTS-----DLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred CCCceEEec-chHHhhhccc------ccCCc---eeeccccC-----CcCceeeecCCceEEEecCCCcceeE
Confidence 3455554 4568999953 33332 33333222 28999999999999999888766543
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=138.32 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=153.4
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCC--CCEEEEEe-CCeEE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT--RSIFFVST-KKNIR 563 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd--~~~l~v~s-dg~I~ 563 (707)
.+.+|.+-|.|+.|+.+|.+|++|+.|- .+.|||....+.. ..+ +|.+.|.++.|-|. ..++++|. |..|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~---r~ivWd~~~~Kll-hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDT---RLIVWDPFEYKLL-HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcc---eEEeecchhccee-eeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4779999999999999999999999988 9999999877776 666 99999999999984 45566665 99999
Q ss_pred EEECCC----------CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC---------C
Q 005235 564 VYDLLK----------QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH---------P 623 (707)
Q Consensus 564 iwDl~~----------~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h---------~ 623 (707)
+||+.. ......+..|...|..|+..|++ ..+.+++.||+|+-+|++....+-.....| -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 23445566788889999999999 788999999999999998643222211111 1
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc-cccCCCCC----Ccc----cceEEe-eCCCC-C------CCCCeeEEE
Q 005235 624 KDITNVAFHRSYP-LFASCSDDCTAYVFHGM-VYSDLNQN----PLI----VPLEIL-RGHTS-S------NGRGVMDCK 685 (707)
Q Consensus 624 ~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~-~~~Dl~~~----~~~----~pl~~l-~gh~~-~------~~~gV~~l~ 685 (707)
-...++..+|..+ +||.|+.|-..++||.+ +...+... +.. .++.-+ .+|.. . .-.+++-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 2467899999766 89999999999999832 21111111 110 012222 23331 0 012267789
Q ss_pred EcCCCCEE-EEEeCCCcEEEEeC
Q 005235 686 FHPRQPWL-FTAGADSVIRLYCH 707 (707)
Q Consensus 686 fspdg~~L-~s~g~Dg~IrlWdl 707 (707)
|+|+|.-| ++-|. -.|.++++
T Consensus 281 fnpNGtElLvs~~g-EhVYlfdv 302 (758)
T KOG1310|consen 281 FNPNGTELLVSWGG-EHVYLFDV 302 (758)
T ss_pred ECCCCcEEEEeeCC-eEEEEEee
Confidence 99999755 55444 46888774
No 226
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.9e-12 Score=131.12 Aligned_cols=248 Identities=17% Similarity=0.126 Sum_probs=173.3
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE-EeccCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFK 495 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~ 495 (707)
.++|++|.|+.++ ..|++++.|..+++|++..... ... .+..++ -..|.+
T Consensus 56 ~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~---~k~-------------------------~KPI~~~~~~H~S 106 (609)
T KOG4227|consen 56 TGCINALQFSHND-RFLASGGDDMHGRVWNVDELMV---RKT-------------------------PKPIGVMEHPHRS 106 (609)
T ss_pred ccccceeeeccCC-eEEeecCCcceeeeechHHHHh---hcC-------------------------CCCceeccCcccc
Confidence 7899999999998 4677777888999999753210 000 011112 235678
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc---CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL---HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~---~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
.|.|++|......+.+|..++ +|..+|+.+.+.. ..+.+ .+.|..+..||..+.|++.+ ++.|.+||.+...
T Consensus 107 NIF~L~F~~~N~~~~SG~~~~---~VI~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 107 NIFSLEFDLENRFLYSGERWG---TVIKHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ceEEEEEccCCeeEecCCCcc---eeEeeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 999999999989999999988 9999999999887 77743 46999999999988898888 8999999998643
Q ss_pred -EEE--EEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC------CCCEEEEEEcCCCCEEEEE
Q 005235 572 -LIK--KLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH------PKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 572 -~~~--~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------~~~I~~vafspdg~llaSg 641 (707)
... .+........++.|+|-. .+|++.+..+-+-+||.+....++....+. ...-.++.|+|.|+.|.+-
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 221 122233557888999976 577888888999999998765544322211 1223578999999988776
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCC---CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS---SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~---~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
-.-..-.+| |+....+. +..+. |.. .+...+.+++|-.+-. ++||+.+-.|.+|.|
T Consensus 263 RR~~~P~~~------D~~S~R~~--V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 263 RRGKCPLYF------DFISQRCF--VLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred hccCCCEEe------eeecccce--eEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 544444455 33333321 21111 111 1223477888876644 999999999999975
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.5e-11 Score=125.44 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=155.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
+..+..++|++.- ..+++++.|..|++|+-...... .........
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst~pt----------------------------------~Lks~sQrn 142 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTCPT----------------------------------KLKSVSQRN 142 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCCCCCc----------------------------------eecchhhcc
Confidence 4567889999965 35777788889998885432110 011233567
Q ss_pred eEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceee-----------eee--ccCCCeEEEEEeCCCCEEEEEe--CC
Q 005235 497 VSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHR-----------IPF--KLHGLPVSSVFHPTRSIFFVST--KK 560 (707)
Q Consensus 497 V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~-----------~~~--~~~~~V~~v~fspd~~~l~v~s--dg 560 (707)
|+|++|-|.+ ..|+.++.. .|.||..+...... ..+ ..+..|++++|.+||..+++++ +.
T Consensus 143 vtclawRPlsaselavgCr~----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRA----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred eeEEEeccCCcceeeeeecc----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 9999999954 577777764 59999875422110 122 3346899999999999999998 79
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE-EE
Q 005235 561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL-FA 639 (707)
Q Consensus 561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l-la 639 (707)
.|.|||..++..+.-..-+.+.++-+.|||||++|++++-|+..++|.....-...+ .....+.|...+|+|+|.. |+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEE
Confidence 999999999866544434456789999999999999999999999996543212122 2223458999999999984 44
Q ss_pred EEeCCCcEEEEecccccCCCC----CCcccceEEe------eCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 640 SCSDDCTAYVFHGMVYSDLNQ----NPLIVPLEIL------RGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 640 Sgs~Dg~I~Vwd~~~~~Dl~~----~~~~~pl~~l------~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
+++..-.|+-.+...-..... .....++..| .+..- -+.++.+++|.|.|.+||+.-.
T Consensus 298 ~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l-~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 298 ACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL-CCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc-ccCccceeeECCCCCEEEEEEc
Confidence 554443333222211000000 0011111111 12110 1334899999999999987643
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=9.9e-11 Score=127.22 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=170.3
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccccccee
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
|+.++.++|.++.||.|.++|+.+++.+.++.......++++|+||. .+++++ ..+.+.++|..+.+..-
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~-~~~v~n~~~~~v~v~D~~tle~v~-------- 114 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK-YVYVANYEPGTVSVIDAETLEPVK-------- 114 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT-EEEEEEEETTEEEEEETTT--EEE--------
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC-EEEEEecCCCceeEecccccccee--------
Confidence 44555688989999999999999999999999988899999999994 455444 68899999987653310
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
.-.... . ........+..|..++....++..-.+. +.|.+-|..........+ .....
T Consensus 115 ----------------~I~~~~--~-~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--~~I~vVdy~d~~~~~~~~i~~g~~ 173 (369)
T PF02239_consen 115 ----------------TIPTGG--M-PVDGPESRVAAIVASPGRPEFVVNLKDT--GEIWVVDYSDPKNLKVTTIKVGRF 173 (369)
T ss_dssp ----------------EEE--E--E--TTTS---EEEEEE-SSSSEEEEEETTT--TEEEEEETTTSSCEEEEEEE--TT
T ss_pred ----------------eccccc--c-cccccCCCceeEEecCCCCEEEEEEccC--CeEEEEEeccccccceeeeccccc
Confidence 000000 0 0001345678888888888676665543 388888877654432333 66677
Q ss_pred eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC----CCeEEEEEcCCC----------CEEEEEECCCcEE
Q 005235 542 PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL----KEVSSIAIHPAG----------DNLIVGSREGKLC 605 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~----~~I~sl~~spdg----------~~L~sGs~Dg~I~ 605 (707)
.....|+|++++++++. .+.|-++|+.+++.+..+..+. ..+..+ .||.. ...++.-....+.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc
Confidence 88999999999998876 6899999999998887765432 223332 23432 2222222234566
Q ss_pred EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC----SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV 681 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg----s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV 681 (707)
+||.... +.++++.....+ ..+..||+++++... ...++|.|+|.. +... +..+..... .++
T Consensus 253 v~d~~~w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~------tl~~---~~~i~~~~~---~~~ 318 (369)
T PF02239_consen 253 VHDDYAW-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK------TLKV---VKTITPGPG---KRV 318 (369)
T ss_dssp -STTTBT-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC------GTEE---EE-HHHHHT-----E
T ss_pred cchhhcC-eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc------Ccce---eEEEeccCC---CcE
Confidence 7888776 778888877777 778889999999887 455899999654 2222 344432211 128
Q ss_pred eEEEEcCCCCEEEEE--eCCCcEEEEe
Q 005235 682 MDCKFHPRQPWLFTA--GADSVIRLYC 706 (707)
Q Consensus 682 ~~l~fspdg~~L~s~--g~Dg~IrlWd 706 (707)
..+.|+++|+.+..+ ..++.|.+||
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEE
Confidence 999999999966433 3344799987
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=1.8e-09 Score=117.03 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=174.7
Q ss_pred EEEEeCC----CcEEEEeC--CCCeEE--EEEecCCcEEEEEEccCCCccEEEEEeC----CeEEEEECCCCCchhcccc
Q 005235 391 EYKGSTD----GTVRIWEV--ESGRCL--RVLEIGEAIQYVAWNPLPELPVLAVSVG----QDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 391 l~sgs~D----gtVrIWd~--~tg~~l--~~l~~~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~~~~~~~~~~~~ 458 (707)
+|.|+.. +.|.+|++ .+|+.. ..+........|+++|++. .|+++... +.|..|.+....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~------- 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT------- 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc-------
Confidence 5666666 68999888 566543 3333477788899999994 66676653 466666543320
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP--- 535 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~--- 535 (707)
+.+..- ............+++++++++|+++...+ +.|.++++.........
T Consensus 74 ----------------g~L~~~-------~~~~~~g~~p~~i~~~~~g~~l~vany~~--g~v~v~~l~~~g~l~~~~~~ 128 (345)
T PF10282_consen 74 ----------------GTLTLL-------NSVPSGGSSPCHIAVDPDGRFLYVANYGG--GSVSVFPLDDDGSLGEVVQT 128 (345)
T ss_dssp ----------------TEEEEE-------EEEEESSSCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSEEEEEEEE
T ss_pred ----------------ceeEEe-------eeeccCCCCcEEEEEecCCCEEEEEEccC--CeEEEEEccCCcccceeeee
Confidence 111111 11222455667899999999999988643 49999999874322121
Q ss_pred ec-----------cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe--EE--EEEe-CCCCCeEEEEEcCCCCEEEE
Q 005235 536 FK-----------LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR--LI--KKLE-TGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 536 ~~-----------~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~--~~--~~l~-~~~~~I~sl~~spdg~~L~s 597 (707)
+. ....+.++.|+|++++++++. ...|++|++.... +. ..+. ........++|+|+|+++.+
T Consensus 129 ~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 129 VRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp EESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred cccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence 11 235678999999999999987 5789999997654 32 2232 23355789999999998866
Q ss_pred EE-CCCcEEEEECCCCCc---ceEEeecC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccc
Q 005235 598 GS-REGKLCWFDMDLSSK---PYRVLKCH------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVP 666 (707)
Q Consensus 598 Gs-~Dg~I~vwDl~~~~~---~~~~l~~h------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~p 666 (707)
.. .++.|.+|++..... .+..+... ......++++|+|++|+++. ..++|.+|++. ..++ .+..
T Consensus 209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d----~~~g-~l~~ 283 (345)
T PF10282_consen 209 VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD----PATG-TLTL 283 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC----TTTT-TEEE
T ss_pred ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe----cCCC-ceEE
Confidence 54 567899999983221 12222211 12578999999999766554 67789999652 1122 2233
Q ss_pred eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 667 LEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 667 l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
+..+...... -.+++++|+|++|++++ .++.|.+|++
T Consensus 284 ~~~~~~~G~~----Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 284 VQTVPTGGKF----PRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEESSSS----EEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCC----ccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 4444433332 79999999999998877 5678888863
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.1e-11 Score=122.57 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=109.0
Q ss_pred EEEEEcCCCCEEEEEeC---CC----CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe---CCeEEEE
Q 005235 498 SSVEWHRRGDYLSTVMP---AG----ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST---KKNIRVY 565 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~---dg----~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s---dg~I~iw 565 (707)
..+.|+++|++|++-.. |. .-+...||.++........+ ...++|.+++|+|++..|++.. ++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999998876554 11 11245555553332221233 5567899999999999887653 5799999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
|++ ++.+..+. ...++.|.|+|+|++|++|+.+ |.|.+||++.. +.+..+. ...++.++|+|+|++|++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~--~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE--HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc--cCcEEEEEEcCCCCEEEEEE
Confidence 996 66666664 4578899999999999998754 66999999865 5555554 34578999999999999887
Q ss_pred C------CCcEEEEec
Q 005235 643 D------DCTAYVFHG 652 (707)
Q Consensus 643 ~------Dg~I~Vwd~ 652 (707)
. |..++||+.
T Consensus 163 t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSF 178 (194)
T ss_pred eccceeccccEEEEEe
Confidence 4 778899964
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=1.4e-11 Score=124.08 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=177.2
Q ss_pred cccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccc
Q 005235 382 KPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 382 ~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
-.|+.+++++++.+.- .+.|-|..|-+.++.+..-+.|..+.|..+.. .++++ ..++.|.+|++...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpe--------- 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPE--------- 82 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccce-eeeeeeeccceEEEEEeecce---------
Confidence 3478888999998876 67788888777665555567788999999884 44444 467789999865431
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLH 539 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~ 539 (707)
| .+.+......+.+++|||+|+.++..+ -+- .|.+|.+.+......+ -.+
T Consensus 83 -------------------w------~ckIdeg~agls~~~WSPdgrhiL~tseF~l---riTVWSL~t~~~~~~~-~pK 133 (447)
T KOG4497|consen 83 -------------------W------YCKIDEGQAGLSSISWSPDGRHILLTSEFDL---RITVWSLNTQKGYLLP-HPK 133 (447)
T ss_pred -------------------e------EEEeccCCCcceeeeECCCcceEeeeeccee---EEEEEEeccceeEEec-ccc
Confidence 1 112334567889999999997666554 444 8999999988764122 334
Q ss_pred CCeEEEEEeCCCCEEEEEe--CC--eEEE-----------EECCCC-----------eEE-----------EEEeCCCCC
Q 005235 540 GLPVSSVFHPTRSIFFVST--KK--NIRV-----------YDLLKQ-----------RLI-----------KKLETGLKE 582 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s--dg--~I~i-----------wDl~~~-----------~~~-----------~~l~~~~~~ 582 (707)
..+..++|+|+|++.+.++ |. .+.| +++.+. ..+ ..+..+ -.
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-lG 212 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-LG 212 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-cc
Confidence 5568999999999988776 31 1111 122111 111 111111 35
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCC-------------------------------------------------
Q 005235 583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS------------------------------------------------- 613 (707)
Q Consensus 583 I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~------------------------------------------------- 613 (707)
+..++|+|.+++|++|++|+.++|.+--+..
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES 292 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence 8889999999999999999988875422100
Q ss_pred --------cc--eEEee------cCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 614 --------KP--YRVLK------CHPKDITNVAFHRSYPLFASCSDD--CTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 614 --------~~--~~~l~------~h~~~I~~vafspdg~llaSgs~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
.+ +..++ .....+.-++||+|..++|+-.+. ..+-|||+. ...+. ..| -...
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq------~l~l~---avL-iQk~ 362 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ------NLKLH---AVL-IQKH 362 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech------hhhhh---hhh-hhcc
Confidence 00 00111 011235678999999999987654 578999543 22221 111 1122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+ |....|+|..+.|+.+.....+.+|.
T Consensus 363 p----iraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 363 P----IRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred c----eeEEEeCCCCceEEEEcCCceEEEEc
Confidence 2 99999999999999888778888885
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=6.8e-11 Score=131.34 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=142.7
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEE
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v 556 (707)
+.+++..+.....+..+...+.+.+|+|+|++|+.++..+....|.+|++.++... ......+.+.+++|+|+++.|+.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEE
Confidence 44455444444445566777899999999999999886654568999999887654 22255566778999999998776
Q ss_pred Ee--C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 557 ST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 557 ~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
+. + ..|++||+.++... .+..+.....+.+|+|+|+.|+..+.. + .|+++|+..+ . ...+..+...+..+
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-E-VRRLTFRGGYNASP 327 (417)
T ss_pred EECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccCe
Confidence 43 3 46999999877543 444444455678999999998877653 3 5778887754 2 44555566677889
Q ss_pred EEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 630 AFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 630 afspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
+|+|+|.+|+.++.++ .|.+|+. .+.. ...+.... . .....|+|++.+|+.++.++
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~------~~~~----~~~l~~~~-~----~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDL------DGGG----ERVLTDTG-L----DESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeC------CCCC----eEEccCCC-C----CCCceECCCCCEEEEEEeCC
Confidence 9999999988887765 6777743 3322 23333222 1 45568999999887776654
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.5e-10 Score=128.70 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=140.6
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
...|.++|...+...........+.+.+|+|+|. .++.++.. ..|.+|++.++.
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~---------------------- 225 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ---------------------- 225 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCC----------------------
Confidence 3458888875444433334466799999999994 45554433 367777765442
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCE
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~ 553 (707)
...+..+.+.+.+++|+|+|+.|+..........|.+|++.++... ....+.+......|+|++..
T Consensus 226 -------------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 226 -------------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS 291 (417)
T ss_pred -------------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE
Confidence 1122334556677899999998876544333457999999887653 22244455567899999998
Q ss_pred EEEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCCE
Q 005235 554 FFVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKDI 626 (707)
Q Consensus 554 l~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~I 626 (707)
|+.+++ ..|.++|+.+++.. .+..+...+..++|+|+|++|+.++.++ .|.+||+.++ ....+... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~-~~~ 367 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDT-GLD 367 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCC-CCC
Confidence 877652 36888898876643 4444556678899999999999988876 7899998764 23334322 234
Q ss_pred EEEEEcCCCCEEEEEeCCC
Q 005235 627 TNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg 645 (707)
...+|+|++..|+.++.++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 5678999999887777654
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=140.16 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=148.8
Q ss_pred EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC-----eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL-----PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI 573 (707)
Q Consensus 500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~-----V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~ 573 (707)
..+.-....++.++.+. .+.|||....... ..+.+... ..-+.++++.-++++|+ -+.|.+|+......-
T Consensus 93 ~~l~~e~k~i~l~~~~n---s~~i~d~~~~~~~-~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRN---SLLIRDSKNSSVL-SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cchhhhcceEEEEEcCc---eEEEEecccCcee-hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 44444566777777666 9999998877654 33322221 22234566666778887 799999998743333
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
..+.+|.+.|.++.++-+|.++++.|.|.++++|++++...+..+.-+|+..|+.+.|+|. .++|++.|.+.++|...
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 3688999999999999999999999999999999999886555577789999999999998 89999999999999432
Q ss_pred cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.. .+..+.+|... ++..++.+++..+++|++.||.+++|++
T Consensus 247 ------~~----~l~~y~~h~g~---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 247 ------GT----QLEVYDEHSGK---GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ------cc----eehhhhhhhhc---ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 11 14477788754 6999999999999999999999999985
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.4e-11 Score=119.22 Aligned_cols=146 Identities=14% Similarity=0.276 Sum_probs=103.1
Q ss_pred EEEEEeCCCCEEEEEeC-----------CeEEEEECCC-CeEEEEEeC-CCCCeEEEEEcCCCCEEEE--EECCCcEEEE
Q 005235 543 VSSVFHPTRSIFFVSTK-----------KNIRVYDLLK-QRLIKKLET-GLKEVSSIAIHPAGDNLIV--GSREGKLCWF 607 (707)
Q Consensus 543 ~~v~fspd~~~l~v~sd-----------g~I~iwDl~~-~~~~~~l~~-~~~~I~sl~~spdg~~L~s--Gs~Dg~I~vw 607 (707)
..+.|+|+|.+|++-.+ +...||-++. +..+..+.. ..++|.+++|+|+|+.||+ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999988776432 2355555532 334444433 3356999999999998755 4567899999
Q ss_pred ECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 608 Dl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
|++ . .++..+ +...++.|.|||+|++||+|+.+ |.|.+||.. +.. ++.... |. . +..+
T Consensus 89 d~~-~-~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~------~~~---~i~~~~-~~-~----~t~~ 149 (194)
T PF08662_consen 89 DVK-G-KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR------KKK---KISTFE-HS-D----ATDV 149 (194)
T ss_pred cCc-c-cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC------CCE---Eeeccc-cC-c----EEEE
Confidence 997 3 555555 45678999999999999998743 679999654 222 133322 22 2 8999
Q ss_pred EEcCCCCEEEEEeC------CCcEEEEeC
Q 005235 685 KFHPRQPWLFTAGA------DSVIRLYCH 707 (707)
Q Consensus 685 ~fspdg~~L~s~g~------Dg~IrlWdl 707 (707)
+|+|+|++|++++. |+.++||++
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 99999999998874 788999974
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.8e-10 Score=123.78 Aligned_cols=247 Identities=12% Similarity=0.155 Sum_probs=169.3
Q ss_pred CCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-cccccceeeeccc------
Q 005235 397 DGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-QRRVKDLLHVETP------ 467 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-~~~~~~v~~~~~~------ 467 (707)
.-.+++|+++++.....+.. ... +++.|+.|. .+++--..+.|.+|++....... .-+...+....++
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred CCceeeeeeccceehhheehhhhcC-cccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCc
Confidence 34588999999766666665 222 699999998 57777788899999987743211 1112222222111
Q ss_pred ------ccccCCCCcEEEEecCCccceE----EeccCCCeEEEEEcCCCCEEE-EEe--CCC------CccEEEEEECCC
Q 005235 468 ------TAPDDNMASIVSWLQHDKLDGI----RLRHFKMVSSVEWHRRGDYLS-TVM--PAG------ESRAIFMHQLSK 528 (707)
Q Consensus 468 ------~~~~~~d~~i~iW~~~~~~~~~----~~~h~~~V~~v~~sp~g~~la-t~s--~dg------~~~~V~Iwdl~~ 528 (707)
....+.-..+++|......... ..-....=..+.|++.|.-|+ .++ -|. +..++++.++.+
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 2234555678888766221111 111223335678988877433 222 222 356888888885
Q ss_pred CceeeeeeccCCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---C
Q 005235 529 KLSHRIPFKLHGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---G 602 (707)
Q Consensus 529 ~~~~~~~~~~~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g 602 (707)
.... .++...++|.++.|+|++..|+++. -..+.|||++ +.++..+. .++-+++-|+|.|++|+.++.+ |
T Consensus 261 ~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 261 ESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred ceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCC
Confidence 5554 6667899999999999999888865 3889999987 66665554 4567899999999999887765 7
Q ss_pred cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecc
Q 005235 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD------DCTAYVFHGM 653 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~------Dg~I~Vwd~~ 653 (707)
.|-|||+.+. +++..+..-. -+-+.|+|+|.+|++++. |+.++|||..
T Consensus 337 ~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 337 DMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 8999999874 6676666433 456899999999998873 7889999864
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.8e-09 Score=116.14 Aligned_cols=301 Identities=13% Similarity=0.161 Sum_probs=193.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEE-----EEe-----CCeEEEEECCCCCc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLA-----VSV-----GQDVLILNTGLGNE 452 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla-----~s~-----d~~V~lwd~~~~~~ 452 (707)
+|+.++.+ +.-+.++.|+|++..++..+.+.... .+.++.|+|-|. .|.+ ... .-.+.+|++.++..
T Consensus 41 ~~S~~G~l-fA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~ 117 (566)
T KOG2315|consen 41 AYSNNGRL-FAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQ 117 (566)
T ss_pred EEcCCCcE-EEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeeccccc-ccccccccccccCCCCCCCceeeeeecccee
Confidence 35555544 44566778999999988655454445 899999999983 3332 112 23577999888432
Q ss_pred --hhcccccceeeeccc----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC--EEEEE--eCCCCccEEE
Q 005235 453 --EEQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD--YLSTV--MPAGESRAIF 522 (707)
Q Consensus 453 --~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~--~lat~--s~dg~~~~V~ 522 (707)
.++.....-....|+ ++.--..+.+.+|+..+-......-|...|+.+.+||.+. .+|+- ..+|....|+
T Consensus 118 ~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 118 RSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred hhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 111111111233333 3334446678888887644444455788899999999743 33332 2344567999
Q ss_pred EEECCCCceeeeeec----cCCCeEEEEEeCCCCEEEE--Ee--C---------CeEEEEECCCCeEEEEEeCCCCCeEE
Q 005235 523 MHQLSKKLSHRIPFK----LHGLPVSSVFHPTRSIFFV--ST--K---------KNIRVYDLLKQRLIKKLETGLKEVSS 585 (707)
Q Consensus 523 Iwdl~~~~~~~~~~~----~~~~V~~v~fspd~~~l~v--~s--d---------g~I~iwDl~~~~~~~~l~~~~~~I~s 585 (707)
||........ .++. ....=..+.|++-|.-|++ .+ | .+++++++....++-.+. ..++|.+
T Consensus 198 i~~~~~~~~~-~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhd 275 (566)
T KOG2315|consen 198 IYKYPEEGQH-QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHD 275 (566)
T ss_pred Eecccccccc-chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceE
Confidence 9998733222 2221 1222235677776654332 22 3 368888888445555554 4589999
Q ss_pred EEEcCCCCEEEE--EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCC
Q 005235 586 IAIHPAGDNLIV--GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQ 660 (707)
Q Consensus 586 l~~spdg~~L~s--Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~ 660 (707)
+.|+|+|+-+++ |-+-..+.|||++- .++..+ ..++=+++-|+|.|++++.|+-+ |.|-|||+..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n------ 345 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN------ 345 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc------
Confidence 999999977654 56677899999972 455444 46777899999999999888754 7999997643
Q ss_pred CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC------CCcEEEEeC
Q 005235 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA------DSVIRLYCH 707 (707)
Q Consensus 661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~------Dg~IrlWdl 707 (707)
..+ +..+..-. -+-+.|+|||.+|+|++. |+.++||++
T Consensus 346 ~K~---i~~~~a~~------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 346 RKL---IAKFKAAN------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred hhh---ccccccCC------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 222 33333222 566899999999998874 688999974
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=5.7e-11 Score=120.63 Aligned_cols=227 Identities=15% Similarity=0.152 Sum_probs=162.1
Q ss_pred EEEEEeCCCcEEEEe-CCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 390 LEYKGSTDGTVRIWE-VESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd-~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
-+++.+.|.++|||- ...|+.-..+.+ ..+++++.+.+.. ..|+++-..|++.-+.+...-..
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnk------------- 103 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNK------------- 103 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhh-------------
Confidence 588899999999995 345665555555 7889999999988 45666667777776654321000
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV 546 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~ 546 (707)
...+ .....|...|..+-|+-...++++.+.|. .+.-+-...+... ..+......+++.
T Consensus 104 -------m~~~----------r~~~~h~~~v~~~if~~~~e~V~s~~~dk---~~~~hc~e~~~~l-g~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 104 -------MTFL----------KDYLAHQARVSAIVFSLTHEWVLSTGKDK---QFAWHCTESGNRL-GGYNFETPASALQ 162 (404)
T ss_pred -------cchh----------hhhhhhhcceeeEEecCCceeEEEecccc---ceEEEeeccCCcc-cceEeeccCCCCc
Confidence 0001 12357889999999999899999999876 5554444444332 1111111111222
Q ss_pred EeCCCCEEEEEe-CCeEEEEEC--CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDL--LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl--~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
|.-. +.++|. .|.|.+..+ ..-.++.++.+|.+.+.+++|.|....|++|..|..+.+||+-........+.+|.
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 2111 455554 455555443 34578889999999999999999999999999999999999986655667788999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
..|..+..-+--+.+.|++.||.|-+|++.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999999998888899999999999999876
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.8e-10 Score=126.02 Aligned_cols=237 Identities=12% Similarity=0.162 Sum_probs=149.3
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235 399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
.|.++|...+...........+.+.+|+|||+ .|+.++.. ..|.+|++.++..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~----------------------- 235 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRR----------------------- 235 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCE-----------------------
Confidence 47778876555443445577899999999994 55555533 2577777655421
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
..+....+.+...+|+|+|+.|+......+...|.++|+.++... .+ .+.+......|+|++..|
T Consensus 236 ------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~--~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 236 ------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS--RVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred ------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EcccCCCCcCCeEECCCCCEE
Confidence 111222334557899999999886544333458999999887654 34 555566778999999988
Q ss_pred EEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+..++ ..|.++|+.+++... +..........+|+|+|+.|+..+.++ .|.++|+.++ . .+.+.. .....
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt~-~~~~~ 377 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-S-VRILTD-TSLDE 377 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC-C-EEEccC-CCCCC
Confidence 77652 368888888776433 332223345678999999998876543 4888998865 2 333432 22334
Q ss_pred EEEEcCCCCEEEEEeCC-CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 628 NVAFHRSYPLFASCSDD-CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 628 ~vafspdg~llaSgs~D-g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
...|+|+|++++.++.+ |.-.||-+ ++.... ...+..+.+. +...+|+|-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~----~~~g~~----~~~l~~~~g~----~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLV----SINGRV----RLPLPTAQGE----VREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEE----ECCCCc----eEECcCCCCC----cCCCccCCC
Confidence 67899999988766643 44444422 222211 2234434333 777888874
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.2e-12 Score=133.05 Aligned_cols=283 Identities=15% Similarity=0.144 Sum_probs=199.1
Q ss_pred CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccce-ecccccccccccccceeeeeEEEcCcccc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTS-LRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~-lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
+|.+|.. .||..|..|++.+. |+.+ |.|..... |+...+|.+-+ ..-.|-
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSD----------D~~vv~WdW~~~~~~l~f~SGH~~Nv-------fQaKFi----- 194 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSD----------DLQVVVWDWVSGSPKLSFESGHCNNV-------FQAKFI----- 194 (559)
T ss_pred cccCCCCccceeeecccCceeeccCc----------cceEEeehhhccCcccccccccccch-------hhhhcc-----
Confidence 6677766 59999999999887 7776 76766554 33333443332 221121
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEE---ecCCcEEEEEEccCCCccEEEEE
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVE-SGRCLRVL---EIGEAIQYVAWNPLPELPVLAVS 437 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l---~~~~~V~~v~~spdg~~~lla~s 437 (707)
||. ....+++++.||.|++=.+. +|.+..+. ++.++|+-++.-|+....+++++
T Consensus 195 ---------------------P~s-~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g 252 (559)
T KOG1334|consen 195 ---------------------PFS-GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG 252 (559)
T ss_pred ---------------------CCC-CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence 122 23467888999999998765 45444332 33899999999999888899999
Q ss_pred eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC---CeEEEEEcCCCC-EEEEEe
Q 005235 438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK---MVSSVEWHRRGD-YLSTVM 513 (707)
Q Consensus 438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~---~V~~v~~sp~g~-~lat~s 513 (707)
.|+.|.-+|+..+....... ....+.. ....++.+|... +|++++
T Consensus 253 eD~~v~~~Dlr~~~pa~~~~-------------------------------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG 301 (559)
T KOG1334|consen 253 EDAVVFHIDLRQDVPAEKFV-------------------------------CREADEKERVGLYTIAVDPRNTNEFAVGG 301 (559)
T ss_pred cccceeeeeeccCCccceee-------------------------------eeccCCccceeeeeEecCCCCccccccCC
Confidence 99999999987654321000 0111222 456788888655 788888
Q ss_pred CCCCccEEEEEECCCCcee-----eeee-------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--C--------
Q 005235 514 PAGESRAIFMHQLSKKLSH-----RIPF-------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK--Q-------- 570 (707)
Q Consensus 514 ~dg~~~~V~Iwdl~~~~~~-----~~~~-------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~--~-------- 570 (707)
.|. .+++||.+.-... ...| ...-.|+|++|+.++.-|+++. |-.|+++.-.. |
T Consensus 302 ~dq---f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 302 SDQ---FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred hhh---hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 877 8999997653221 0122 2235789999997766555554 88899995432 2
Q ss_pred --eEEEE-EeCCCCC--eEEEEE-cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 571 --RLIKK-LETGLKE--VSSIAI-HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 571 --~~~~~-l~~~~~~--I~sl~~-spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
..++. +++|.+. |.++-| -|...++++||.-|.|.||+-.++ ..+..+.+-..-|+|+.=||--++|||++-|
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence 23333 6777543 666655 678899999999999999999877 7788888877799999999999999999999
Q ss_pred CcEEEEe
Q 005235 645 CTAYVFH 651 (707)
Q Consensus 645 g~I~Vwd 651 (707)
.-|+||-
T Consensus 458 ~DVKIWT 464 (559)
T KOG1334|consen 458 HDVKIWT 464 (559)
T ss_pred cceeeec
Confidence 9999994
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=1.1e-10 Score=134.73 Aligned_cols=273 Identities=18% Similarity=0.183 Sum_probs=174.1
Q ss_pred EeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235 403 WEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL 481 (707)
Q Consensus 403 Wd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~ 481 (707)
|+. .|..+..+.. ...|..++.++.....+++++.||+|++|+...-... . +.......|
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----~-------------~s~rS~lty- 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----G-------------GSARSELTY- 1094 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----c-------------ceeeeeEEE-
Confidence 775 4666665544 6777788887766457888999999999997543111 0 000111122
Q ss_pred cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee------eee--ccCCCeEEE-EEeC-CC
Q 005235 482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR------IPF--KLHGLPVSS-VFHP-TR 551 (707)
Q Consensus 482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------~~~--~~~~~V~~v-~fsp-d~ 551 (707)
....+.+.++...+.|++||+++.|| .|.++++....... +.. ...+.+.++ +|.. .+
T Consensus 1095 ---------s~~~sr~~~vt~~~~~~~~Av~t~DG---~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1095 ---------SPEGSRVEKVTMCGNGDQFAVSTKDG---SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred ---------eccCCceEEEEeccCCCeEEEEcCCC---eEEEEEccccccccceeeeeecccccCCCceEEeeccccccc
Confidence 22567899999999999999999998 99999987621110 111 223333333 3322 23
Q ss_pred -CEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCCCCE
Q 005235 552 -SIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDI 626 (707)
Q Consensus 552 -~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I 626 (707)
..++.++ -+.|..||+++.....+++ ...+.|++++++|.+.++++|+..|.+.+||++-. .++..+. .+..+|
T Consensus 1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPI 1241 (1431)
T ss_pred ceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCc
Confidence 3667777 5899999999876554443 33478999999999999999999999999999976 5665554 345788
Q ss_pred EEEEEcCCCC---EEEE-Ee-CCCcEEEEecccccCCCC--CCcccceEEeeCCCC----CCCCCeeEEEEcCCCCEEEE
Q 005235 627 TNVAFHRSYP---LFAS-CS-DDCTAYVFHGMVYSDLNQ--NPLIVPLEILRGHTS----SNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 627 ~~vafspdg~---llaS-gs-~Dg~I~Vwd~~~~~Dl~~--~~~~~pl~~l~gh~~----~~~~gV~~l~fspdg~~L~s 695 (707)
+.|..+|-.+ ..++ ++ ..+.|-+|++..+..-.. .....|.-....... +.......+.+...++++.+
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 9998888655 4444 44 567899996543210000 000000000000000 11112344556666789999
Q ss_pred EeCCCcEEEEeC
Q 005235 696 AGADSVIRLYCH 707 (707)
Q Consensus 696 ~g~Dg~IrlWdl 707 (707)
||.|..||.||.
T Consensus 1322 ggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDP 1333 (1431)
T ss_pred cCCccceeeccC
Confidence 999999999984
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.8e-10 Score=126.39 Aligned_cols=237 Identities=13% Similarity=0.171 Sum_probs=144.6
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe-CC--eEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235 399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV-GQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~-d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
.|.++|...............+.+..|+|||+ .|+.++. ++ .|.+|++.++..
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~----------------------- 254 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVR----------------------- 254 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCe-----------------------
Confidence 56777865544433344477899999999994 4554443 22 466667654421
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
..+....+.....+|+|+|+.|+......+...|.++++.++... .+ .+.......+|+|+++.|
T Consensus 255 ------------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~--~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 255 ------------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT--RITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred ------------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE--ECccCCCCccceEECCCCCEE
Confidence 111112233446899999998886544333457889999877653 44 555566788999999988
Q ss_pred EEEe--C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+..+ + ..|.++|+.+++.. .+..........+|+|+|++|+..+.+ + .|.++|+.++ . ...+... ....
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~ 396 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDE 396 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCC
Confidence 7765 2 35777788777643 332222334567999999999876653 3 4566777665 3 3334322 2233
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 628 NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 628 ~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
...|+|+|+.|+..+. +|.-.+|-+ +.. +.. ...+..+.+. +...+|+|-
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~----~~~-G~~---~~~l~~~~g~----~~~p~Wsp~ 447 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAV----SID-GRF---KARLPAGQGE----VKSPAWSPF 447 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEE----ECC-CCc---eEECcCCCCC----cCCCccCCC
Confidence 5689999997766554 444333321 221 221 3445444444 778889873
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=6.3e-11 Score=122.22 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=162.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCccEEE-EEeC--CeEEEEECCCCCchhcccccce
Q 005235 389 YLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPELPVLA-VSVG--QDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~~lla-~s~d--~~V~lwd~~~~~~~~~~~~~~v 461 (707)
..|++|-.+|.+.+|....+- .+..+.....+..|.-++... .|++ +|.. +.+.|||+...
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~----------- 183 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQS----------- 183 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCC-ceEecCchhcccceeeeecccc-----------
Confidence 478888999999999988443 444566678888888888774 4555 6666 68999998654
Q ss_pred eeecccccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K 537 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~ 537 (707)
..+|...+-..-. -....-.++++.|-+. ...||+++.-+ .|++||.+.++.....| -
T Consensus 184 ---------------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h---qvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 184 ---------------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH---QVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ---------------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce---eEEEecCcccCcceeEecc
Confidence 3455443222111 1122335678888877 78999999877 99999999776554666 6
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
...+++++...|.++++++|. -+.+..||++++++... +.+-.+.|++|..||.+.+|++++-|+.|+|||+.+. ++
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr-kl 324 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR-KL 324 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc-hh
Confidence 678999999999999999998 79999999999988876 7788889999999999999999999999999999975 43
Q ss_pred eEEeecCCCCEEEEEEcCC
Q 005235 616 YRVLKCHPKDITNVAFHRS 634 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafspd 634 (707)
+... +-...++++.+.++
T Consensus 325 l~kv-YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 325 LHKV-YVKSRLTFILLRDD 342 (412)
T ss_pred hhhh-hhhccccEEEecCC
Confidence 3222 12455677777554
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.6e-10 Score=125.68 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=134.0
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l 554 (707)
+.+.+..+.....+......+.+-+|+|+|+. ++..+...+...|.+.++.++... ......+.....+|+|||+.|
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEE
Confidence 34444444433344445556778899999986 433444333568999999887654 222455566678999999988
Q ss_pred EEEeC--C----eEEEEECCCC--eEEEEEeC-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEE--ECCCCCcceEEeecC
Q 005235 555 FVSTK--K----NIRVYDLLKQ--RLIKKLET-GLKEVSSIAIHPAGDNLIVGS-REGKLCWF--DMDLSSKPYRVLKCH 622 (707)
Q Consensus 555 ~v~sd--g----~I~iwDl~~~--~~~~~l~~-~~~~I~sl~~spdg~~L~sGs-~Dg~I~vw--Dl~~~~~~~~~l~~h 622 (707)
+..++ | .+.+|++..+ .....+.. ........+|+|||+.|+..+ .+|...+| ++.........+..+
T Consensus 246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 87652 2 3444777652 12233332 223456789999999888766 35654444 554322334556555
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-
Q 005235 623 PKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA- 698 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~- 698 (707)
...+...+|||+|+.|+..+.+ ..|.+|+. .++. ...+...... +..+.|+|+|++|+..+.
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl------~~g~----~~~Lt~~~~~----~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL------ATGR----DYQLTTSPEN----KESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEEC------CCCC----eEEccCCCCC----ccceEECCCCCEEEEEECC
Confidence 5677889999999988876543 35788843 3333 2334332222 678999999998865433
Q ss_pred --CCcEEEEeC
Q 005235 699 --DSVIRLYCH 707 (707)
Q Consensus 699 --Dg~IrlWdl 707 (707)
.+.|.+|++
T Consensus 392 ~g~~~L~~vdl 402 (428)
T PRK01029 392 SNESELYLISL 402 (428)
T ss_pred CCCceEEEEEC
Confidence 245666664
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=5.9e-10 Score=124.54 Aligned_cols=204 Identities=15% Similarity=0.106 Sum_probs=135.6
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEE
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v 556 (707)
+.+++..+.....+..+...+...+|+|+|++|+.++.+.....|.+|++.++... ......+.+....|+|+|+.|+.
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEE
Confidence 44445554444445567778899999999999998876654558999999888654 22244555667999999998875
Q ss_pred Ee--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 557 ST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 557 ~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
.. ++ .|.+||+.+++.. .+..+........|+|+|+.|+..+. +| .|+++|+.++ . ...+..........
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-~~~lt~~~~~~~~~ 336 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-AERVTFVGNYNARP 336 (430)
T ss_pred EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccce
Confidence 43 33 6888999887643 45555455677899999998877664 33 5777787765 3 23333222334567
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 630 AFHRSYPLFASCSD-DC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 630 afspdg~llaSgs~-Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
+|+|+|..|+..+. ++ .|.+|+ +.++. ...+.. ... .....|+|+|.+|+.++.+
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~d------l~tg~----~~~lt~-~~~----~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQD------LQRGS----VRILTD-TSL----DESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEE------CCCCC----EEEccC-CCC----CCCceECCCCCEEEEEEec
Confidence 89999998887664 33 466663 33332 223322 111 3356899999998766543
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=4.5e-09 Score=113.89 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=160.7
Q ss_pred CCCCCCcccCCCCcEEEEEeC----CCcEEEEeCCC--CeE--EEEEe-cCCcEEEEEEccCCCccEEEEE-eCCeEEEE
Q 005235 376 PSRKDLKPYPVACYLEYKGST----DGTVRIWEVES--GRC--LRVLE-IGEAIQYVAWNPLPELPVLAVS-VGQDVLIL 445 (707)
Q Consensus 376 p~~~~l~pfp~~~~~l~sgs~----DgtVrIWd~~t--g~~--l~~l~-~~~~V~~v~~spdg~~~lla~s-~d~~V~lw 445 (707)
+.|..|..-| +..+||+... +|.|..|.+.. |.+ +.... .......++++|++. .++++. .++.|.++
T Consensus 37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEE
Confidence 3444444333 4457777655 67999998875 443 33333 266778899999994 555555 58899999
Q ss_pred ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235 446 NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ 525 (707)
Q Consensus 446 d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd 525 (707)
++........ .+.++...+..............++.|+|+|+++++.... ...|.+|+
T Consensus 115 ~l~~~g~l~~--------------------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~~~ 172 (345)
T PF10282_consen 115 PLDDDGSLGE--------------------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYVYD 172 (345)
T ss_dssp EECTTSEEEE--------------------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEEEE
T ss_pred EccCCcccce--------------------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEEEE
Confidence 9866321100 0011111000000001223557899999999999887653 34899999
Q ss_pred CCCCc--eee-e--eeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCe--EEEEEeC------CCCCeEEEEE
Q 005235 526 LSKKL--SHR-I--PFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQR--LIKKLET------GLKEVSSIAI 588 (707)
Q Consensus 526 l~~~~--~~~-~--~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~--~~~~l~~------~~~~I~sl~~ 588 (707)
+.... ... . .+........++|+|+++++++.. +++|.+|++. ++. .+..+.. +......|++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 98765 321 1 225667789999999999999987 6999999988 443 3333332 1235889999
Q ss_pred cCCCCEEEEEE-CCCcEEEEECCCCC---cceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235 589 HPAGDNLIVGS-REGKLCWFDMDLSS---KPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG 652 (707)
Q Consensus 589 spdg~~L~sGs-~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~ 652 (707)
+|+|++|.++. ..+.|.+|+++... +.+..+......-+.++|+|+|++|+++. .++.|.+|++
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 99999988765 45679999995322 23334444445589999999999888776 6679999965
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.8e-10 Score=116.89 Aligned_cols=310 Identities=15% Similarity=0.182 Sum_probs=192.3
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCe-----EEEEEec-------------CCcEEEEEEccCCCc-cEEEEEeCCeEE
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGR-----CLRVLEI-------------GEAIQYVAWNPLPEL-PVLAVSVGQDVL 443 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~-----~l~~l~~-------------~~~V~~v~~spdg~~-~lla~s~d~~V~ 443 (707)
-|...+.+||+|..+|.|.++.-.... ....++. ...|+.+.|.++++. .++.++.|.+|+
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiK 111 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIK 111 (433)
T ss_pred EeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCccee
Confidence 377788999999999999999754321 1122211 577999999998754 567778899999
Q ss_pred EEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC-------ccceE-EeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235 444 ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD-------KLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPA 515 (707)
Q Consensus 444 lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~-------~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~d 515 (707)
+|.+........+.+..-.. ..+.-.++++=-... ....+ ...|..-|.+++++.|+..++++..
T Consensus 112 lWKi~er~~k~~~~~~~~~~------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd- 184 (433)
T KOG1354|consen 112 LWKIRERGSKKEGYNLPEEG------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD- 184 (433)
T ss_pred eeeeeccccccccccccccC------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc-
Confidence 99986543322110000000 000000111100000 00111 3368889999999999999988763
Q ss_pred CCccEEEEEECCCCceeeeee---c------cCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEE----EEEe---
Q 005235 516 GESRAIFMHQLSKKLSHRIPF---K------LHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLI----KKLE--- 577 (707)
Q Consensus 516 g~~~~V~Iwdl~~~~~~~~~~---~------~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~----~~l~--- 577 (707)
= .|.+|.+...... ..+ + ...-|++..|||....+++ ++ .|+|++.|++...+- +.+.
T Consensus 185 L---RINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 185 L---RINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred e---eeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 2 7999998754332 222 1 2346889999997544443 33 799999999853211 1111
Q ss_pred ---------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC------------CE---EEEEEcC
Q 005235 578 ---------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK------------DI---TNVAFHR 633 (707)
Q Consensus 578 ---------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~------------~I---~~vafsp 633 (707)
.-...|+.+.|+++|+++++-++- +|++||+....+|+.+.+-|.. +| ..++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 112447889999999999988764 8999999877789988887642 22 4588999
Q ss_pred CCCEEEEEeCCCcEEEEeccccc--CCC---------CCCcccceEEeeCCCC-C---------CCCCeeEEEEcCCCCE
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYS--DLN---------QNPLIVPLEILRGHTS-S---------NGRGVMDCKFHPRQPW 692 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~--Dl~---------~~~~~~pl~~l~gh~~-~---------~~~gV~~l~fspdg~~ 692 (707)
++..++|||.....++|++..++ |.. ......+-.+..+... . ....+...+|||....
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 99999999999999999743111 000 0111111112211111 0 0122567899999999
Q ss_pred EEEEeCCCcEEEE
Q 005235 693 LFTAGADSVIRLY 705 (707)
Q Consensus 693 L~s~g~Dg~IrlW 705 (707)
||.+...+ +.+|
T Consensus 420 ia~aatnn-lyif 431 (433)
T KOG1354|consen 420 IAVAATNN-LYIF 431 (433)
T ss_pred eeeeecCc-eEEe
Confidence 98887654 4444
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.4e-10 Score=125.19 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=137.7
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
.+.+++..+.....+..+...+.+..|+|+|++|+.++.......|.++|+.++... .+ ...+.....+|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEE
Confidence 445556555544455667778999999999999998876544558999999887653 33 334445678999999988
Q ss_pred EEEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+.+. ++ .|.++|+.+++. ..+..+.......+|+|+|+.|+..+. ++ .|+++|+.++ . ...+........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~Lt~~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VSRLTFEGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEEecCCCCCc
Confidence 7643 44 488889987764 345555455678899999998877664 33 4666777655 3 333432333345
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCc--EE
Q 005235 628 NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSV--IR 703 (707)
Q Consensus 628 ~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~--Ir 703 (707)
..+|+|+|++|+..+. ++...||-+ ++.++. +..+.... . .....|+|+|++|+.++. +|. +.
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~----dl~~g~----~~~lt~~~-~----d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQ----DLETGA----MQVLTSTR-L----DESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEE----ECCCCC----eEEccCCC-C----CCCceECCCCCEEEEEEecCCceEEE
Confidence 6799999998876654 455556533 333332 22333221 1 334589999998866553 443 44
Q ss_pred EEe
Q 005235 704 LYC 706 (707)
Q Consensus 704 lWd 706 (707)
+++
T Consensus 421 ~~~ 423 (448)
T PRK04792 421 AVS 423 (448)
T ss_pred EEE
Confidence 443
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.4e-09 Score=120.94 Aligned_cols=241 Identities=10% Similarity=0.048 Sum_probs=143.2
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCcc-EE-EEEeCC--eEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELP-VL-AVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~-ll-a~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
..|.+.|...+...........+.+-+|+|||... ++ ++..++ .|.+.++.++.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~---------------------- 222 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA---------------------- 222 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC----------------------
Confidence 46777776655443322335667888999999532 22 222333 45555554432
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc--EEEEEECCCCc--eeeeee--ccCCCeEEEEE
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR--AIFMHQLSKKL--SHRIPF--KLHGLPVSSVF 547 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~--~V~Iwdl~~~~--~~~~~~--~~~~~V~~v~f 547 (707)
...+....+.....+|+|||+.|+..+...+.. .+.+|++..+. .. ..+ ...+.....+|
T Consensus 223 -------------~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~w 288 (428)
T PRK01029 223 -------------GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSF 288 (428)
T ss_pred -------------ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEE
Confidence 222333444556789999999998877432122 34446766531 11 223 22344567899
Q ss_pred eCCCCEEEEEe--CCe--EEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEe
Q 005235 548 HPTRSIFFVST--KKN--IRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 548 spd~~~l~v~s--dg~--I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l 619 (707)
+|||+.|+..+ ++. |.++++.. +.....+..+...+.+.+|||+|+.|+..+.+ ..|.+||+.++ . ...+
T Consensus 289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~-~~~L 366 (428)
T PRK01029 289 SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-R-DYQL 366 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-C-eEEc
Confidence 99999877665 454 44555542 33344555555567889999999999877653 36899999876 3 3444
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 620 KCHPKDITNVAFHRSYPLFASCS-DD--CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 620 ~~h~~~I~~vafspdg~llaSgs-~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
......+..+.|+|+|+.|+..+ .. +.|.+++ +..+. ...+...... +...+|+|-.
T Consensus 367 t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd------l~~g~----~~~Lt~~~g~----~~~p~Ws~~~ 426 (428)
T PRK01029 367 TTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS------LITKK----TRKIVIGSGE----KRFPSWGAFP 426 (428)
T ss_pred cCCCCCccceEECCCCCEEEEEECCCCCceEEEEE------CCCCC----EEEeecCCCc----ccCceecCCC
Confidence 43344677899999999776443 33 3566663 33332 2223222222 6778898753
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=6.9e-09 Score=107.03 Aligned_cols=267 Identities=15% Similarity=0.148 Sum_probs=175.5
Q ss_pred CCcEEEEeCCC--Ce--EEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeeccccc
Q 005235 397 DGTVRIWEVES--GR--CLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTA 469 (707)
Q Consensus 397 DgtVrIWd~~t--g~--~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~ 469 (707)
+.-|.+|++.+ |+ .+......+.++-|+|+|++ +.|+++..+ +.|..|.+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~------------------- 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPD------------------- 74 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCC-------------------
Confidence 46699999874 32 22233337888999999999 467777654 44554443321
Q ss_pred ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---eccCCC-----
Q 005235 470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP---FKLHGL----- 541 (707)
Q Consensus 470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~---~~~~~~----- 541 (707)
+|.+..-+. ......+.+.++++++|++++++.... +.|.++-+........+ +.|.+.
T Consensus 75 ----~G~Lt~ln~-------~~~~g~~p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 75 ----DGRLTFLNR-------QTLPGSPPCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHER 141 (346)
T ss_pred ----CCeEEEeec-------cccCCCCCeEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence 122222111 111223348899999999999998755 59999999764322122 255555
Q ss_pred -----eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEE----EeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 005235 542 -----PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKK----LETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDM 609 (707)
Q Consensus 542 -----V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~----l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl 609 (707)
+..+.|.|++++|++.. -..|.+|++..+++... +..+ .....|.|||+|++..+.+ -+++|.+|..
T Consensus 142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 88999999999999987 47899999998765422 3333 4468899999999886654 4889999999
Q ss_pred CCCCcceEEeecC---------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235 610 DLSSKPYRVLKCH---------PKDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 610 ~~~~~~~~~l~~h---------~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
+.....+..++.+ .....+|..+++|++|.++.. ..+|-+|.+.. .++. +..+.....+ +.
T Consensus 221 ~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~----~~g~-L~~~~~~~te----g~ 291 (346)
T COG2706 221 NPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP----DGGK-LELVGITPTE----GQ 291 (346)
T ss_pred cCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC----CCCE-EEEEEEeccC----Cc
Confidence 8743344444433 245678999999998887652 34788886632 2222 1122222223 23
Q ss_pred CeeEEEEcCCCCEEEEEeCCC-cEEEEe
Q 005235 680 GVMDCKFHPRQPWLFTAGADS-VIRLYC 706 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg-~IrlWd 706 (707)
.-.+..|+|.+.+|+.++.++ .|.+|.
T Consensus 292 ~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 292 FPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 378899999999999888653 466664
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.24 E-value=1.1e-08 Score=111.15 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=162.0
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecCCcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235 391 EYKGSTDGTVRIWEVESGRCLRVLEIGEAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA 469 (707)
Q Consensus 391 l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~ 469 (707)
+++-..+|.|.|.|..+.+.+..+.....+ ..+.|+||| +++++++.|+.|.++|+.+...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~----------------- 70 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKV----------------- 70 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSE-----------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccE-----------------
Confidence 345677899999999999999999985555 457899999 4788888899999999876531
Q ss_pred ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---c-----cCCC
Q 005235 470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---K-----LHGL 541 (707)
Q Consensus 470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~-----~~~~ 541 (707)
...........+++++++|+++++++... +.+.|+|..+.+.. ..+ . ....
T Consensus 71 ------------------v~~i~~G~~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~tle~v-~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 71 ------------------VATIKVGGNPRGIAVSPDGKYVYVANYEP--GTVSVIDAETLEPV-KTIPTGGMPVDGPESR 129 (369)
T ss_dssp ------------------EEEEE-SSEEEEEEE--TTTEEEEEEEET--TEEEEEETTT--EE-EEEE--EE-TTTS---
T ss_pred ------------------EEEEecCCCcceEEEcCCCCEEEEEecCC--CceeEeccccccce-eecccccccccccCCC
Confidence 11223345678899999999999887532 39999999988776 444 1 2346
Q ss_pred eEEEEEeCCCCEEEEEe-C-CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcce
Q 005235 542 PVSSVFHPTRSIFFVST-K-KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-d-g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~ 616 (707)
+.++..+|.++.++++- + +.|.+.|....+. ...+.. ........|+|+|++++++ ..++.|.++|..+. +..
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v 207 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLV 207 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecccccceeEEEeeccc-eEE
Confidence 77888899999777765 4 8898889776432 234443 3567889999999998775 45678999999876 444
Q ss_pred EEee----cCCCCEEEEEEcCCC-CEEEEEeCC---------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235 617 RVLK----CHPKDITNVAFHRSY-PLFASCSDD---------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM 682 (707)
Q Consensus 617 ~~l~----~h~~~I~~vafspdg-~llaSgs~D---------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~ 682 (707)
..+. .|..++..+ .||.+ +..++.... ..+.+| +..... .++.+..... + .
T Consensus 208 ~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~------d~~~wk---vv~~I~~~G~----g-l 272 (369)
T PF02239_consen 208 ALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH------DDYAWK---VVKTIPTQGG----G-L 272 (369)
T ss_dssp EEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S------TTTBTS---EEEEEE-SSS----S--
T ss_pred EEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccc------hhhcCe---EEEEEECCCC----c-c
Confidence 4443 234444443 34543 333333221 223333 333333 3666766433 3 6
Q ss_pred EEEEcCCCCEEEEE----eCCCcEEEEeC
Q 005235 683 DCKFHPRQPWLFTA----GADSVIRLYCH 707 (707)
Q Consensus 683 ~l~fspdg~~L~s~----g~Dg~IrlWdl 707 (707)
-+..||++++|... ...++|.++|.
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 77889999999887 44578888873
No 252
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.9e-11 Score=128.77 Aligned_cols=169 Identities=18% Similarity=0.259 Sum_probs=131.2
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCC--CCEEEEEECCCcEEEEE
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPA--GDNLIVGSREGKLCWFD 608 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spd--g~~L~sGs~Dg~I~vwD 608 (707)
..+ +|.|-|.|+.|+.+|.+|++|+ |-.+.|||.-..+++..+. +|...|.|+.|-|- .+.+++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 566 9999999999999999999999 7899999998878777764 68888999999884 57899999999999999
Q ss_pred CCCC---------CcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCC-cccceEEeeCCCCCC
Q 005235 609 MDLS---------SKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNP-LIVPLEILRGHTSSN 677 (707)
Q Consensus 609 l~~~---------~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~-~~~pl~~l~gh~~~~ 677 (707)
+... ..+...+..|...|..++-.|+++ .|.+|+.||+|+-+|++......... ....+..+...-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie- 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE- 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe-
Confidence 9852 245566778999999999999994 88999999999999776432211111 10111111112222
Q ss_pred CCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235 678 GRGVMDCKFHPRQP-WLFTAGADSVIRLYC 706 (707)
Q Consensus 678 ~~gV~~l~fspdg~-~L~s~g~Dg~IrlWd 706 (707)
..+++.+|..+ +|+.||.|--++|||
T Consensus 203 ---lk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 203 ---LKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred ---eeeeeecCCCCceEEecCCCchhhhhh
Confidence 67899999887 578888999999987
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=118.22 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL 580 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~ 580 (707)
+...++-|...| .|.++++..+... ..+ .|.+.|.++.++.+-..|.+++ |+.+..|+....+.++...+..
T Consensus 69 ~t~~lvlgt~~g---~v~~ys~~~g~it-~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQG---SVLLYSVAGGEIT-AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred CceEEEeecCCc---cEEEEEecCCeEE-EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence 344666777766 9999999999887 666 7889999999999888888887 8999999999999999999988
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-----CCEEE-EEeCCCcEEEEec
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-----YPLFA-SCSDDCTAYVFHG 652 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-----g~lla-Sgs~Dg~I~Vwd~ 652 (707)
..+.+++++|||..|++++ +.|.+||+.+. +.+.+|.+|.++|++++|--. |.+|. ++..+.-|.+|-.
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 8899999999999999887 58999999987 889999999999999999876 55444 4455666788843
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.4e-09 Score=115.19 Aligned_cols=256 Identities=9% Similarity=0.016 Sum_probs=176.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|-.--.|++||+..-.+...-.. ...|.-.-++.|- ..++....|.+|.+-.-... .....-......+.+.
T Consensus 65 Y~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~IefHak~G~-hy~~RIP~~GRDm~y~ 142 (703)
T KOG2321|consen 65 YLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIEFHAKYGR-HYRTRIPKFGRDMKYH 142 (703)
T ss_pred EEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-hhheEeecCceeeehhhcCe-eeeeecCcCCcccccc
Confidence 5788999999999999876544322222 4555555666665 35666677777765432110 0000000001111111
Q ss_pred -----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----
Q 005235 468 -----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----- 536 (707)
Q Consensus 468 -----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----- 536 (707)
+..++....|..+++..+.. ..+....+.+++|..++-..+|++|+.+| .|-.||.+..... ..+
T Consensus 143 ~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g---~VEfwDpR~ksrv-~~l~~~~~ 218 (703)
T KOG2321|consen 143 KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG---VVEFWDPRDKSRV-GTLDAASS 218 (703)
T ss_pred CCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc---eEEEecchhhhhh-eeeecccc
Confidence 45555666777777765433 33555568999999999999999999988 9999999876654 333
Q ss_pred --cc-----CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCC--CEEEEEECCCcEE
Q 005235 537 --KL-----HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGLKEVSSIAIHPAG--DNLIVGSREGKLC 605 (707)
Q Consensus 537 --~~-----~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~ 605 (707)
.+ ...|+++.|+.+|-.+++|+ .|.|.||||++.+++..- .+..-+|..+.|.+.+ ..|++ .....++
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~k 297 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILK 297 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhh
Confidence 12 23499999999999999998 899999999998765432 3344668999997764 33443 3345689
Q ss_pred EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
|||-.++ +++..+.. +..++.+++-|++-+|++|-+++.+..|-+.
T Consensus 298 iWd~~~G-k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTG-KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccC-Cceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 9999988 77777664 4559999999999999999999988888654
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=7.5e-09 Score=110.28 Aligned_cols=274 Identities=12% Similarity=0.157 Sum_probs=173.3
Q ss_pred CCcEEEEeCCCCeEEEEEec-CCc--EE-EEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhcccc---cceeeeccc-
Q 005235 397 DGTVRIWEVESGRCLRVLEI-GEA--IQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRRV---KDLLHVETP- 467 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~-~~~--V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~~---~~v~~~~~~- 467 (707)
+..+.|||+.+|..+..+.. ..+ .+ -+.|+-+. .+++--....+.|+++ ++.. ....+. ..+....++
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 34799999999999999888 222 34 67888887 4555557788999996 3221 111111 111111111
Q ss_pred -----------ccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC--------CccEEEEEECC
Q 005235 468 -----------TAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG--------ESRAIFMHQLS 527 (707)
Q Consensus 468 -----------~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg--------~~~~V~Iwdl~ 527 (707)
--.....+++++|.+......... -....-..+.|++.|++|++-.... +...+.|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 111234455666665533222111 1122235688999999876543211 23478888888
Q ss_pred CCceeeeeeccCCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---
Q 005235 528 KKLSHRIPFKLHGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE--- 601 (707)
Q Consensus 528 ~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D--- 601 (707)
..... ......++|..++|.|.+..|++.+ ...+-++|++.. +...+ ..+.=+.+.|+|.++++++++.|
T Consensus 264 e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 264 ERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred ccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccc
Confidence 55443 2326689999999999998887755 688999999866 44333 33455778899999999998776
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS------DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
|.+-+||......+...+.+- ..+-+.|+|++.++.+.. .|..|.|||+. .... +
T Consensus 340 gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~------g~~~------f----- 400 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY------GAKV------F----- 400 (561)
T ss_pred cceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec------Cchh------h-----
Confidence 569999987553444345443 345578999999877664 47889999653 1111 0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
+.+.+.|.|.+++.-+.+.+.
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 156677888777766665544
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=2.8e-08 Score=119.37 Aligned_cols=306 Identities=11% Similarity=0.096 Sum_probs=181.0
Q ss_pred cEEEEEeCCCcEEEE----eCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-------ccc
Q 005235 389 YLEYKGSTDGTVRIW----EVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-------QRR 457 (707)
Q Consensus 389 ~~l~sgs~DgtVrIW----d~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-------~~~ 457 (707)
..++.+..+|.|.+. +..+...-..-.....|.|++||||++ .++.++.+++|.+..- ..+... ...
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~ 165 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFG 165 (928)
T ss_pred CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEec-cceEEEEeecCccccC
Confidence 456666788889888 555544332223378999999999995 5666667788877652 221110 011
Q ss_pred ccceeeeccc----ccccCCCCcEE--EEecCCc--cceEEeccCCCeEEEEEcCCCCEEEEEeCC---CCccEEEEEEC
Q 005235 458 VKDLLHVETP----TAPDDNMASIV--SWLQHDK--LDGIRLRHFKMVSSVEWHRRGDYLSTVMPA---GESRAIFMHQL 526 (707)
Q Consensus 458 ~~~v~~~~~~----~~~~~~d~~i~--iW~~~~~--~~~~~~~h~~~V~~v~~sp~g~~lat~s~d---g~~~~V~Iwdl 526 (707)
.....+++|+ ..-|+...... .-+..-. ..+.+. +...-..|+|-.||.|||+.+.+ +..+.++||+-
T Consensus 166 ~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R 244 (928)
T PF04762_consen 166 ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR 244 (928)
T ss_pred CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence 1233444443 11111111000 0000000 011122 45567789999999999998862 22589999997
Q ss_pred CCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCCCeEEEEEe----CCCCCeEEEEEcCCCCEEEE
Q 005235 527 SKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLKQRLIKKLE----TGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 527 ~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~~~~~~~l~----~~~~~I~sl~~spdg~~L~s 597 (707)
. +..+ ..- ...+--.+++|.|.|.+|++.. ...|.+|.- +|-.-..|. .....|..|.|++++..||+
T Consensus 245 e-G~L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 245 E-GELQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAV 321 (928)
T ss_pred C-ceEE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEE
Confidence 6 4443 333 4555667899999999999875 255777763 332222222 34456999999999999999
Q ss_pred EECCCcEEEEECCCCC-cceEEeecC-CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCC---------------
Q 005235 598 GSREGKLCWFDMDLSS-KPYRVLKCH-PKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLN--------------- 659 (707)
Q Consensus 598 Gs~Dg~I~vwDl~~~~-~~~~~l~~h-~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~--------------- 659 (707)
...|. |.+|-..+.. -+.+.+... ...+..+.|||..+ .|...+.+|.+..++..-..+..
T Consensus 322 ~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVID 400 (928)
T PF04762_consen 322 WLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVID 400 (928)
T ss_pred EecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEe
Confidence 87665 9999886541 112233322 23455699999655 46666665666555432100000
Q ss_pred ----------CCCcccce--EEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 660 ----------QNPLIVPL--EILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 660 ----------~~~~~~pl--~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
......|+ ..+.-. . .|.+++|++++..+++...||+|.+|.
T Consensus 401 G~~lllTpf~~a~VPPPMs~~~l~~~-~----~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPMSSYELELP-S----PVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCeEEEecccccCCCchHhceEEcCC-C----CcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 00000111 122222 2 299999999998899999999999986
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=4.2e-07 Score=97.19 Aligned_cols=259 Identities=14% Similarity=0.054 Sum_probs=154.6
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE---------eCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS---------VGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s---------~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
++|.|.|..+++.+.++.....-..+ ++||+...+++.+ .++.|.+||+.+....-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-------------- 91 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-------------- 91 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe--------------
Confidence 89999999999999999985555555 9999953334444 36788888877653310
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH 548 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs 548 (707)
-..+.... ..........++++|+|++|++...+. ...|.+.|+.+++.. ..+...+...-+..+
T Consensus 92 ----------~i~~p~~p---~~~~~~~~~~~~ls~dgk~l~V~n~~p-~~~V~VvD~~~~kvv-~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 92 ----------DIELPEGP---RFLVGTYPWMTSLTPDNKTLLFYQFSP-SPAVGVVDLEGKAFV-RMMDVPDCYHIFPTA 156 (352)
T ss_pred ----------EEccCCCc---hhhccCccceEEECCCCCEEEEecCCC-CCEEEEEECCCCcEE-EEEeCCCCcEEEEec
Confidence 00000000 000122345789999999998776442 349999999999887 555333322222222
Q ss_pred CCCCEEEEEeCCeEEEEECCC-CeEE-EE---EeCC-----CCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCC----
Q 005235 549 PTRSIFFVSTKKNIRVYDLLK-QRLI-KK---LETG-----LKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSS---- 613 (707)
Q Consensus 549 pd~~~l~v~sdg~I~iwDl~~-~~~~-~~---l~~~-----~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~---- 613 (707)
...+++.+.||......+.+ ++.. .. +... ..+ .|.+ +|.++.+... |.|++.|+....
T Consensus 157 -e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 157 -NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred -CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 23333334455554444432 2211 11 1110 112 3455 7877777666 999999964321
Q ss_pred cceEEeec-------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEee-CCCC
Q 005235 614 KPYRVLKC-------HPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTS 675 (707)
Q Consensus 614 ~~~~~l~~-------h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~ 675 (707)
.++..+.. ..+.+.-++++|++..++.+.. .+.|.++ |..+... +..+. |+.
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi------D~~t~kv---i~~i~vG~~- 300 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV------DAKTGKR---LRKIELGHE- 300 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE------ECCCCeE---EEEEeCCCc-
Confidence 23333321 1233445999999987766431 2468888 4444443 44443 332
Q ss_pred CCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235 676 SNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl 707 (707)
+..++++||++ +|++.. .++.|.+.|.
T Consensus 301 -----~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 301 -----IDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred -----eeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 89999999999 887665 6788998874
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=4.1e-07 Score=94.12 Aligned_cols=254 Identities=17% Similarity=0.177 Sum_probs=161.5
Q ss_pred CCCCCCCCcccCCCCcEEEEEe---CCCcEEEEeCCC--CeEEEEEec---CCcEEEEEEccCCCccEEEEE-eCCeEEE
Q 005235 374 KLPSRKDLKPYPVACYLEYKGS---TDGTVRIWEVES--GRCLRVLEI---GEAIQYVAWNPLPELPVLAVS-VGQDVLI 444 (707)
Q Consensus 374 ~lp~~~~l~pfp~~~~~l~sgs---~DgtVrIWd~~t--g~~l~~l~~---~~~V~~v~~spdg~~~lla~s-~d~~V~l 444 (707)
.+.+|..|. +..+...||++. .+|.|--|.+.. |+....-+. ..+.+.|+++++|. .++++. ..+.|.+
T Consensus 38 ~~~nptyl~-~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v 115 (346)
T COG2706 38 ELGNPTYLA-VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSV 115 (346)
T ss_pred ccCCCceEE-ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEE
Confidence 344444443 344455677663 357787777664 665332222 45559999999994 455544 5678888
Q ss_pred EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw 524 (707)
+-+...... .. .+.+-.-.+.... ...-..-+.+..+.|+|++|+++... .-.|.+|
T Consensus 116 ~p~~~dG~l-~~-------------------~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~~y 172 (346)
T COG2706 116 YPLQADGSL-QP-------------------VVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPDLG--TDRIFLY 172 (346)
T ss_pred EEcccCCcc-cc-------------------ceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEeecC--CceEEEE
Confidence 887542110 00 0000000000000 01111227788999999999988753 2389999
Q ss_pred ECCCCceeee---eeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC-eEEEEEe---------CCCCCeEEEEEc
Q 005235 525 QLSKKLSHRI---PFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ-RLIKKLE---------TGLKEVSSIAIH 589 (707)
Q Consensus 525 dl~~~~~~~~---~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~-~~~~~l~---------~~~~~I~sl~~s 589 (707)
++..+..... .++.......++|||++++..+.+ +++|-+|..... ..+..++ .+..+...|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9997765421 126677889999999999999887 799999998763 2222222 244678899999
Q ss_pred CCCCEEEEEEC-CCcEEEEECCCCCcceEEe---ecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEec
Q 005235 590 PAGDNLIVGSR-EGKLCWFDMDLSSKPYRVL---KCHPKDITNVAFHRSYPLFASCSDD-CTAYVFHG 652 (707)
Q Consensus 590 pdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l---~~h~~~I~~vafspdg~llaSgs~D-g~I~Vwd~ 652 (707)
|+|++|.++.. ...|.+|.++..+..+..+ ..+...-+...|++.+++|+++..+ .+|.||..
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 99999987643 2368889887654333332 2344446889999999988888865 47899854
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=5.8e-09 Score=113.16 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=148.7
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEe------C--------------CCCEEEEEe-
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFH------P--------------TRSIFFVST- 558 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fs------p--------------d~~~l~v~s- 558 (707)
|.+.|||....|| .++||+..+++.+ ..| ...+..++..|. | +...++-|+
T Consensus 3 ~~~~~~A~~~~~g---~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDG---RLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCC---eEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 4578999999888 9999999999887 666 334555555553 2 122455566
Q ss_pred CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235 559 KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 559 dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ 636 (707)
.|.|.+|++..++...++. .|.+.|.++.++.+-..|.+++.|+.+..|+.... +.+..+......+.+++++|||.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCC
Confidence 8999999999999998887 47788999999999999999999999999999876 77888888889999999999999
Q ss_pred EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-----CCEE-EEEeCCCcEEEEe
Q 005235 637 LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-----QPWL-FTAGADSVIRLYC 706 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-----g~~L-~s~g~Dg~IrlWd 706 (707)
.+++|| ++|++| ++.+... +..|.||.+. |.+++|--. |.++ .++..+.-|.+|-
T Consensus 158 ~l~~as--~~ik~~------~~~~kev---v~~ftgh~s~----v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 158 ILLTAS--RQIKVL------DIETKEV---VITFTGHGSP----VRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEecc--ceEEEE------EccCceE---EEEecCCCcc----eEEEEEEEeccccccceeeeccccccceeEEE
Confidence 999887 689999 5556555 8899999998 999999876 5554 4455566677763
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2e-08 Score=107.86 Aligned_cols=250 Identities=12% Similarity=0.156 Sum_probs=160.2
Q ss_pred CcEEEEeCCCCeEEEEEec---CCcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 398 GTVRIWEVESGRCLRVLEI---GEAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~---~~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
..++|||+.||...+.|.. ...+ .-..||.|+ .++|.-..+.|.|++......
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd--Ky~Arm~~~sisIyEtpsf~l--------------------- 338 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD--KYFARMTGNSISIYETPSFML--------------------- 338 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCC--ceeEEeccceEEEEecCceee---------------------
Confidence 5799999999999988877 2222 345799998 577777778899998654211
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT 550 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd 550 (707)
.+. ..-.-..|....|+|.++.||.=...- ....+.+-.+.+.+.. +.- -++-.-..+.|..+
T Consensus 339 ------ld~-------Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i-Rt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 339 ------LDK-------KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI-RTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred ------ecc-------cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee-eeccceeeeccEEEeccC
Confidence 110 001235678889999999888765432 2346777777777655 333 22222234667778
Q ss_pred CCEEEEEeC-----------CeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC-CC-
Q 005235 551 RSIFFVSTK-----------KNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDL-SS- 613 (707)
Q Consensus 551 ~~~l~v~sd-----------g~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~-~~- 613 (707)
|.+|++-.| ..+-|+.++.. -++..+. -...|..++|-|.|+.+++-+. ..++.+|-+.+ ..
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence 888887432 23455555443 2233333 2356889999999998876543 35688998874 22
Q ss_pred -cceEEeecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 614 -KPYRVLKCHPKDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 614 -~~~~~l~~h~~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
.+++.+. ....+.|.|+|.|++++.+. ..|.+.++|... .... ......|. +.+.+.|.|.
T Consensus 484 ~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~----a~~k----~~~~~eh~-----~at~veWDPt 548 (698)
T KOG2314|consen 484 PSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY----ADLK----DTASPEHF-----AATEVEWDPT 548 (698)
T ss_pred hhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch----hhhh----hccCcccc-----ccccceECCC
Confidence 2334443 35578899999999887654 578899997631 1111 11112333 2788999999
Q ss_pred CCEEEEEeCCC
Q 005235 690 QPWLFTAGADS 700 (707)
Q Consensus 690 g~~L~s~g~Dg 700 (707)
|++++|++.-+
T Consensus 549 GRYvvT~ss~w 559 (698)
T KOG2314|consen 549 GRYVVTSSSSW 559 (698)
T ss_pred CCEEEEeeehh
Confidence 99999988643
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.5e-07 Score=103.19 Aligned_cols=286 Identities=14% Similarity=0.076 Sum_probs=170.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE-EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-cceeeec
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDLLHVE 465 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v~~~~ 465 (707)
...++.++.+|.|.-+|..+|+.+..+.....+. +++.. ++ .+++++.++.|..+|..++........ ..+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GG--LVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CC--EEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 3578888999999999999999988877744332 23322 33 688888899999999988765322211 1111100
Q ss_pred ----ccccccCCCCcEEEEecCCccceEEeccCCCeE------EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 466 ----TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS------SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 466 ----~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~------~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
-.+..+..++.+..|+..++...-......... +.... +..++.+..++ .+..+|+.++... ..
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g---~v~ald~~tG~~~-W~ 215 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGG---KLVALDLQTGQPL-WE 215 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCC---EEEEEEccCCCEe-ee
Confidence 014455667888888887665433222211111 11111 24666777666 8999998887654 32
Q ss_pred e--ccC-C--C------e-EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235 536 F--KLH-G--L------P-VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602 (707)
Q Consensus 536 ~--~~~-~--~------V-~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg 602 (707)
. ... + . + .+..++ +..+++++ ++.++.||+.+++.+...... ....+.+ .+.+|++++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCC
Confidence 2 110 0 0 0 111222 34566655 899999999999887766532 1222333 467888899999
Q ss_pred cEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235 603 KLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV 681 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV 681 (707)
.|..+|..++. .+-.... ......+... .+..|++++.+|.|++++. .++.. +..+..+... -.
T Consensus 290 ~l~~~d~~tG~-~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~------~tG~~---~~~~~~~~~~---~~ 354 (377)
T TIGR03300 290 VVVALDRRSGS-ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR------EDGSF---VARLKTDGSG---IA 354 (377)
T ss_pred eEEEEECCCCc-EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC------CCCCE---EEEEEcCCCc---cc
Confidence 99999998873 3322211 1112222222 3568888999999999953 34443 4445443321 02
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 682 MDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 682 ~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
.+.++.. ..|+.++.||.|..|
T Consensus 355 ~sp~~~~--~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 355 SPPVVVG--DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCCEEEC--CEEEEEeCCceEEEe
Confidence 2233332 358899999998765
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.9e-07 Score=103.46 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=132.5
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
..|.+-|.. |...+.+...+.+....|+|+|+..++.++.. ..|.++|+.++..
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------------- 225 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------------- 225 (419)
T ss_pred ceEEEECCC-CCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE----------------------
Confidence 345555543 33344444445788999999995324433433 3566666655422
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
..+....+.+....|+|+|+.++..........|.++++.++.. ..+ ...+......|+|||+.
T Consensus 226 -------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 226 -------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred -------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEcccCCCccCccEECCCCCE
Confidence 22223445566788999999887665444466899999988765 344 44443456689999998
Q ss_pred EEEEeCC----eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---------CcEEEEECCCCCcceEEee
Q 005235 554 FFVSTKK----NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---------GKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 554 l~v~sdg----~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---------g~I~vwDl~~~~~~~~~l~ 620 (707)
|+..+++ .|.++|+.+++..+....+. . ...|||+|+.|+..+.. ..|.+.|+.++ . .+.+.
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT 365 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLT 365 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECC
Confidence 8777642 78889998876543332221 2 24899999998877654 26888888765 2 44555
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDD-CTAYVF 650 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~D-g~I~Vw 650 (707)
.. .......|+|+|+.|+..+.+ +.-.|+
T Consensus 366 ~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 366 AN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 43 233468999999977766543 344444
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=128.62 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=166.1
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
..++++.-|...-+. +.....-..|.++.=+|.. ...++++.||.|++|....+
T Consensus 2187 n~~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~------------------------ 2240 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHG------------------------ 2240 (2439)
T ss_pred cCCccccceecccce-eEeecccCceeeecCCCCC-ceEEecCCCceEEEEeccCC------------------------
Confidence 445555555533222 2222235678888888887 47899999999999986543
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
.+|..|+. .+ ...|+.+.|+..|+.+..+..|| .+.+|+.+.... ... .|......+.|-. ..
T Consensus 2241 ~~v~~~rt--------~g-~s~vtr~~f~~qGnk~~i~d~dg---~l~l~q~~pk~~--~s~qchnk~~~Df~Fi~--s~ 2304 (2439)
T KOG1064|consen 2241 QQVVCFRT--------AG-NSRVTRSRFNHQGNKFGIVDGDG---DLSLWQASPKPY--TSWQCHNKALSDFRFIG--SL 2304 (2439)
T ss_pred CeEEEeec--------cC-cchhhhhhhcccCCceeeeccCC---ceeecccCCcce--eccccCCccccceeeee--hh
Confidence 24455532 23 37889999999999999999888 999999983211 222 6667777788875 55
Q ss_pred EEEEe----CCeEEEEECCC---CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235 554 FFVST----KKNIRVYDLLK---QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI 626 (707)
Q Consensus 554 l~v~s----dg~I~iwDl~~---~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I 626 (707)
+++++ ++.+.+||.-. ..++. .+|.+.++++++-|....|++|+.+|.|++||++.. ++.++++.
T Consensus 2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~----- 2376 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA----- 2376 (2439)
T ss_pred hhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-----
Confidence 66553 58999999653 23444 789899999999999999999999999999999854 55544442
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
++ ...+|++|+..|.|+||++..++-+.+.+....-.-+--+. | ..+ +--....|++||+||+
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~-----g-~Q~-~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI-----G-MQI-NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc-----C-cee-eeccCceEEEecCCCC
Confidence 44 45689999999999999776655444444322111110010 0 111 2223457899999985
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=1.3e-07 Score=99.97 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=130.3
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CC-eEEEEECCCCeEEEEEeCCCCC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KK-NIRVYDLLKQRLIKKLETGLKE 582 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg-~I~iwDl~~~~~~~~l~~~~~~ 582 (707)
+|++++.+|.. ...|.+...+-. .++++.+.|.-..+..++.-++.|+ || .+-|||..+++ ++.+...-+.
T Consensus 331 ~Gd~ia~VSRG----kaFi~~~~~~~~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVSRG----KAFIMRPWDGYS--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGN 403 (668)
T ss_pred CCcEEEEEecC----cEEEECCCCCee--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccc
Confidence 78999999963 677777665544 4557778899888988888888888 76 89999998775 4566677789
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecccccCC
Q 005235 583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----TAYVFHGMVYSDL 658 (707)
Q Consensus 583 I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----~I~Vwd~~~~~Dl 658 (707)
|.++..+|+|.+++++.....|.+.|++++ .+...-+...+-|+.++|||++++||-+--+| .|+++|+.
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~----- 477 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD----- 477 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-----
Confidence 999999999999999999999999999988 44333344567899999999999999887776 68999643
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
.... ..+.+-.+| =.+.+|.|++++|..-+
T Consensus 478 -~~Ki-y~vTT~ta~-------DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 478 -GGKI-YDVTTPTAY-------DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CCeE-EEecCCccc-------ccCcccCCCCcEEEEEe
Confidence 3221 112222233 45578999999886554
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=3.6e-09 Score=125.92 Aligned_cols=188 Identities=17% Similarity=0.215 Sum_probs=151.0
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
...+-..|.++.-||...+.+||+.|| .|++|....++.. ..+ .....|+.+.|+.+|.-+.++. ||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~~v-~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQQV-VCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCc---eEEEEeccCCCeE-EEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 445667889999999999999999999 9999999988877 666 5558999999999998888876 99999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG---SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG---s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~ 643 (707)
+. .++....++|....+.+.|-. ..++++ +.++.+.+||.-........-..|.+.++++++.|..++|+|||.
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 87 667777888988888888863 566664 346789999976543333334889999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|.|+|||+ .+..+ + |.-. . ++ ...++++|++.|.|+||++
T Consensus 2357 ~G~v~l~D~------rqrql-------~-h~~~----~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2357 KGEVCLFDI------RQRQL-------R-HTFQ----A----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred cCcEEEeeh------HHHHH-------H-HHhh----h----hh-hhheeeccCcccceEEEEc
Confidence 999999954 34333 1 3221 2 55 6679999999999999985
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.4e-09 Score=116.66 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=187.5
Q ss_pred EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhccccc--ceeeeccc-------ccccCCCCcEEEEe
Q 005235 413 VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVK--DLLHVETP-------TAPDDNMASIVSWL 481 (707)
Q Consensus 413 ~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~--~v~~~~~~-------~~~~~~d~~i~iW~ 481 (707)
.+...+++.++..+|.|. -++.++.-| +.+.|+..... ....|.. .+-...++ .++..+.....+|+
T Consensus 20 sl~v~~~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred EEEecCcccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 455678899999999994 455555444 45555544311 1111111 11111121 22233444556777
Q ss_pred cCCccc----eEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE
Q 005235 482 QHDKLD----GIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 482 ~~~~~~----~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~ 555 (707)
+..... ..+.+|...|+.+.|++.. ..+++++.|. .|..||++........+ .-......|+|+-..+.+.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt---~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT---YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccc---cceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 653221 2366899999999999865 5788999887 99999998876542333 4455667889987666655
Q ss_pred EEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc
Q 005235 556 VST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH 632 (707)
Q Consensus 556 v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs 632 (707)
+.+ .+.|++||++.| .++..+++|...|++++|..- ...+.+.+.||+|+.||.+.+.+..+....-..+|+.-.|-
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 555 889999999986 677888998888899888642 35688899999999999987655445455556788888888
Q ss_pred CCCCEEEEE--eCCCcEEEEecccccCCC--CCCcccceEEeeCCCCCCCCCeeEEEEcCCCC----------EEEEEeC
Q 005235 633 RSYPLFASC--SDDCTAYVFHGMVYSDLN--QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP----------WLFTAGA 698 (707)
Q Consensus 633 pdg~llaSg--s~Dg~I~Vwd~~~~~Dl~--~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~----------~L~s~g~ 698 (707)
|-|.-.+.- -.+..|.+++.... |+. ......|+.++.||... |....|-..+. .|+|-+.
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~-d~e~n~~~~~~pVh~F~GH~D~----V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENS-DLEWNVFDLNTPVHTFVGHDDV----VLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccch-hhhhccccCCcceeeecCcchH----HHHHhhhhcccccCCCCccceeEEEeec
Confidence 866522211 11224555433311 121 11234579999999998 88877754332 6999999
Q ss_pred CCcEEEEeC
Q 005235 699 DSVIRLYCH 707 (707)
Q Consensus 699 Dg~IrlWdl 707 (707)
|.++|+|-+
T Consensus 330 D~~lrlWpI 338 (1081)
T KOG0309|consen 330 DQTLRLWPI 338 (1081)
T ss_pred CCceEeeec
Confidence 999999954
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=8.1e-08 Score=96.24 Aligned_cols=197 Identities=16% Similarity=0.172 Sum_probs=134.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECC-CC
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLL-KQ 570 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~-~~ 570 (707)
...++.|++.|..+++.-.+| .+.+-+........ ... .|.-.+..+.|+...+ ++++|+ |+.+..||++ .+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G---~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRG---SISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeeEEEeeccCceEEEEcCCC---cEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 356788999999888888877 66655544444431 234 7788888889987554 666777 8999999999 34
Q ss_pred eEEEE-EeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC--CCEEEEEeCCCc
Q 005235 571 RLIKK-LETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCT 646 (707)
Q Consensus 571 ~~~~~-l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd--g~llaSgs~Dg~ 646 (707)
+.+.. .+.|...|.||.-+| .+.+|++|++|-.|++||.+.-.+|+..-. -.+.|+.+.++|. +.+|++|-..|
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G- 277 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG- 277 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-
Confidence 44443 556778899998876 478999999999999999997667765443 3478999999995 34566665555
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEE-EE
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIR-LY 705 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~Ir-lW 705 (707)
.+|-+.... ... ....+...+.|.+- +..-.|......|+|++ .|..|+ +|
T Consensus 278 ~ki~~~~~~--~~e--~~~~~~s~~~hdSl----~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 278 AKILDSSDK--VLE--FQIVLPSDKIHDSL----CYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ceEEEeccc--ccc--hheeeeccccccce----eeccccccccceeeeeeccccceeeee
Confidence 566644311 111 11123445566554 66667755556788875 577755 77
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.9e-07 Score=103.55 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCC
Q 005235 495 KMVSSVEWHRRGDY-LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLK 569 (707)
Q Consensus 495 ~~V~~v~~sp~g~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~ 569 (707)
+.+....|+|+|+. ++..+..+....|.++|+.++... ......+......|+|||..|+... +..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999985 666666543568999999888664 2225566677889999998877643 36799999987
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC--
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD-- 644 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D-- 644 (707)
+.. ..+..+........|+|||+.|+..+.. + .|++.|+.++ .. +.+..... ....|||+|..|+..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-SV-EQVVFHGK--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-Ce-EeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence 764 3454443334566899999988877643 3 5888888765 32 22322221 235899999988766543
Q ss_pred -----C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 645 -----C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 645 -----g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
+ .|.+. ++.++. ...|.... . .....|+|||+.|+..+.
T Consensus 342 ~~~~~~~~~I~v~------d~~~g~----~~~LT~~~-~----~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 342 NEFGKNTFNLYLI------STNSDY----IRRLTANG-V----NQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cccCCCCcEEEEE------ECCCCC----eEECCCCC-C----cCCeEECCCCCEEEEEEc
Confidence 2 45555 333332 23343332 1 345889999998866553
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=116.54 Aligned_cols=185 Identities=13% Similarity=0.081 Sum_probs=144.4
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE-----EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI-----QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V-----~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
-.....++.+..+..+-|||...+..+..+.+.+.. .-+-++++. .++++++.-+.|.+|.+....
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn-------- 166 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDN-------- 166 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccC--------
Confidence 334457888888999999999988887777663322 122234444 467777778888888865210
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeecc
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFKL 538 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~~ 538 (707)
....+.+|.+.|..+.|+-+|.++++++.|. ++++|.+.+..... .-|+|
T Consensus 167 --------------------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 167 --------------------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDR---SIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred --------------------------CcceecccCCceEEEEEccCCcEEEEEecCc---ceeeeecccccccCcccccc
Confidence 0113669999999999999999999999987 99999999988773 23499
Q ss_pred CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
.+.|..++|+|+ .+++++ |.+.++|+.. +..+..+..|. +.|..++.+++...+++++.|+.+++||+.
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 999999999999 777777 9999999765 44455777665 459999999999999999999999999985
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=6.4e-07 Score=109.74 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=149.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC---------------CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCC
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG---------------EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLG 450 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~---------------~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~ 450 (707)
++.++++-+..+.|++||.. |..+..+... .....|++.++++ .|+++. .++.|+++++.++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~ 656 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LLYVADTENHALREIDFVNE 656 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EEEEEeCCCceEEEEecCCC
Confidence 45567777788899999975 5555444331 1357889998874 344443 4567888887654
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCC
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
........ +..+ .+..++.... ...-.....|+|++ +|..+++.+.++ .|++|+...+
T Consensus 657 ~V~tlag~-------------G~~g----~~~~gg~~~~-~~~ln~P~gVa~dp~~g~LyVad~~~~---~I~v~d~~~g 715 (1057)
T PLN02919 657 TVRTLAGN-------------GTKG----SDYQGGKKGT-SQVLNSPWDVCFEPVNEKVYIAMAGQH---QIWEYNISDG 715 (1057)
T ss_pred EEEEEecc-------------Cccc----CCCCCChhhh-HhhcCCCeEEEEecCCCeEEEEECCCC---eEEEEECCCC
Confidence 21100000 0000 0000000000 00012346899999 455556555555 8999998776
Q ss_pred ceeeeee-c---------------cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC-------------
Q 005235 530 LSHRIPF-K---------------LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET------------- 578 (707)
Q Consensus 530 ~~~~~~~-~---------------~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~------------- 578 (707)
... .+ + .-.....++|+|++..|+++. ++.|++||+.++.......+
T Consensus 716 ~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 716 VTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred eEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 542 22 1 112456799999999777765 68999999987653211100
Q ss_pred C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--------------CCCEEEEEEcCCCC
Q 005235 579 G--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--------------PKDITNVAFHRSYP 636 (707)
Q Consensus 579 ~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--------------~~~I~~vafspdg~ 636 (707)
+ -....+++++++|..+++.+.+++|++||..++ .. .++.+. -.....|+++++|+
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-RV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-eE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 0 012468999999999899999999999999765 32 223221 12467899999999
Q ss_pred EEEEEeCCCcEEEEecc
Q 005235 637 LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd~~ 653 (707)
++++.+.++.|++|+..
T Consensus 872 lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEEEECCCCEEEEEECC
Confidence 99999999999999764
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=6.9e-07 Score=109.44 Aligned_cols=198 Identities=11% Similarity=0.132 Sum_probs=129.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc-----------------CCCeEEEEEeCCCCEEEE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL-----------------HGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~-----------------~~~V~~v~fspd~~~l~v 556 (707)
.....|++.++++.|+++... ++.|+++|+.++.. .++ +. -.....++|+|++..+++
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~--n~~Ir~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTE--NHALREIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCC--CceEEEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence 346789999998877666543 24899999877653 233 10 123468999996555555
Q ss_pred Ee--CCeEEEEECCCCeEEEEEeCC---------------CCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcceEE
Q 005235 557 ST--KKNIRVYDLLKQRLIKKLETG---------------LKEVSSIAIHPAGDNL-IVGSREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 557 ~s--dg~I~iwDl~~~~~~~~l~~~---------------~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl~~~~~~~~~ 618 (707)
+. ++.|++||..++... .+.+. -.....|+++|+|..| ++.+.+++|++||+.++......
T Consensus 700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 43 789999999877543 22211 1235679999999855 55566789999999865321100
Q ss_pred ------------eecC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC--
Q 005235 619 ------------LKCH--------PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-- 676 (707)
Q Consensus 619 ------------l~~h--------~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~-- 676 (707)
+..+ -..-.+++|+++|.++++-+.++.|++|+.. ++. +..+.+....
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~------tg~----v~tiaG~G~~G~ 848 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA------TKR----VTTLAGTGKAGF 848 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC------CCe----EEEEeccCCcCC
Confidence 0000 0123588999999999999999999999643 221 1222221100
Q ss_pred --------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 677 --------NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 677 --------~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.-.....++++++|.++++-+.+++|++|++
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 0012678999999999899999999999985
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=1.2e-08 Score=100.51 Aligned_cols=255 Identities=16% Similarity=0.229 Sum_probs=148.4
Q ss_pred EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc--cceEEeccCCCe
Q 005235 420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK--LDGIRLRHFKMV 497 (707)
Q Consensus 420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~--~~~~~~~h~~~V 497 (707)
|..+.++.+- .|+++..++.+..+....+.. +..|+...+ ....+..|..+-
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~------------------------~~~~~rt~~i~~~~~~a~~sep~ 92 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRC------------------------ISLWERDDGIDPFKVLAKNSEID 92 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEE------------------------echhhcccCcCceeeeeccCCCC
Confidence 6667777665 577777777666555433211 111222111 111233455544
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEE------eCCeEEEEECCC
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVS------TKKNIRVYDLLK 569 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~------sdg~I~iwDl~~ 569 (707)
.+-+.+--++.++++..|| .+.+.+.+........+ .+.+. .+.+.-..+.++.++ ..+..++|+++.
T Consensus 93 p~~~~s~~~t~V~~~~~dg---~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 93 PNDACTMTDNRVCIGYADG---SLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred CcccccccCCceEecCCCc---eEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccc
Confidence 4444555677899999988 89998876522110111 11111 111222234444443 245667777765
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcE
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTA 647 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I 647 (707)
.+.+..-......|++++-||..+ .+++|+.||.+.+||++....|...+..|..+|+.|-|||..+ .|++|+.||.+
T Consensus 169 ~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 169 IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 433221111223499999999764 5677899999999999988788888999999999999999654 89999999999
Q ss_pred EEEeccc-ccCCCCCCc-------ccceE---EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 648 YVFHGMV-YSDLNQNPL-------IVPLE---ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 648 ~Vwd~~~-~~Dl~~~~~-------~~pl~---~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.-||... +-.+..+.. ..|++ .+.+-.......|++ |.-.|+.|++|+.-+.|++++
T Consensus 249 w~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 249 WHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 9997651 000000000 00111 111111111122444 444688999999999998875
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-07 Score=101.32 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=147.9
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
.-+-+.|||-| ..++.-.-..|.+|--.... .+....|. .|.
T Consensus 212 Tetyv~wSP~G--TYL~t~Hk~GI~lWGG~~f~-----------------------------------r~~RF~Hp-~Vq 253 (698)
T KOG2314|consen 212 TETYVRWSPKG--TYLVTFHKQGIALWGGESFD-----------------------------------RIQRFYHP-GVQ 253 (698)
T ss_pred eeeeEEecCCc--eEEEEEeccceeeecCccHH-----------------------------------HHHhccCC-Cce
Confidence 34678999999 46666566667777522211 11122444 478
Q ss_pred EEEEcCCCCEEEEEeCCC--------CccEEEEEECCCCceeeeee-c--cCCCe-EEEEEeCCCCEEEEEeCCeEEEEE
Q 005235 499 SVEWHRRGDYLSTVMPAG--------ESRAIFMHQLSKKLSHRIPF-K--LHGLP-VSSVFHPTRSIFFVSTKKNIRVYD 566 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg--------~~~~V~Iwdl~~~~~~~~~~-~--~~~~V-~~v~fspd~~~l~v~sdg~I~iwD 566 (707)
-+.|||+.+||+|-+..- ....++|||+.++... ..| . ....+ .-+.||.|++++|.-+..+|.||+
T Consensus 254 ~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyE 332 (698)
T KOG2314|consen 254 FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYE 332 (698)
T ss_pred eeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-cceeccCCCccccceEEeccCCceeEEeccceEEEEe
Confidence 899999999999987543 3469999999999888 777 2 22222 246799999999988888899998
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC----------------------------------------------
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR---------------------------------------------- 600 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~---------------------------------------------- 600 (707)
..+-.++-.-......|..+.|+|.+..||-=+.
T Consensus 333 tpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 333 TPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred cCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 7654333221112234555556665544442111
Q ss_pred -----------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccc
Q 005235 601 -----------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVP 666 (707)
Q Consensus 601 -----------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~p 666 (707)
=-.+-||.++....|+..+. -...|...+|-|.|..|++-+.. .++.+|.+.. .......
T Consensus 413 dR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~-----~~~~~~l 486 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET-----NIKKPSL 486 (698)
T ss_pred EeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec-----CCCchhh
Confidence 00122333333222332222 23567888999999988766533 5789996542 1222223
Q ss_pred eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe---CCCcEEEEeC
Q 005235 667 LEILRGHTSSNGRGVMDCKFHPRQPWLFTAG---ADSVIRLYCH 707 (707)
Q Consensus 667 l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g---~Dg~IrlWdl 707 (707)
++.|... . .+.+.|+|.|++++.++ ..|.+.++|.
T Consensus 487 Vk~~dk~--~----~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 487 VKELDKK--F----ANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred hhhhccc--c----cceEEEcCCCcEEEEEEecccccceEEEec
Confidence 5555442 2 78899999999997764 4677777763
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=2.6e-07 Score=101.71 Aligned_cols=266 Identities=14% Similarity=0.166 Sum_probs=184.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-----------------chhcccccceeeeccc-----ccccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN-----------------EEEQRRVKDLLHVETP-----TAPDDNM 474 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~-----------------~~~~~~~~~v~~~~~~-----~~~~~~d 474 (707)
.....|++|+... .++++++.+|.+++..+.+.. ..+.+|...+..+.|. +.+...+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999877 488899999999999877642 2455667777766665 6777888
Q ss_pred CcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC
Q 005235 475 ASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR 551 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~ 551 (707)
|-|.+|-+-.+.... -....+.|.+++|+.+|..++.+..|| .|.+-.+...+.-...++ ......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG---avIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG---AVIVGSVDGNRIWGKELK-GQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC---CEEEEeeccceecchhcc-hheccceeecccH
Confidence 999999776544332 224567789999999999999999998 888888877644322221 1234478899998
Q ss_pred CEEEEEe-CCeEEEEECCCC-------eEEEEEeC----CCCCeEEEEEc--------CCCCEEEEEECCCcEEEEECCC
Q 005235 552 SIFFVST-KKNIRVYDLLKQ-------RLIKKLET----GLKEVSSIAIH--------PAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 552 ~~l~v~s-dg~I~iwDl~~~-------~~~~~l~~----~~~~I~sl~~s--------pdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
..++.+- .|.+.+||.+.. .+.-...+ ....|..+.|. |+-..|+++-.+|++.|..-..
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 8777665 899999997643 11111111 11225556553 5778899999999999886665
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC---------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC---------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM 682 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg---------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~ 682 (707)
...|+-.-. .-.|....|+++|..||.|+.+. .|++|. +....+.+|+..... |+
T Consensus 249 D~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys----------p~G~i~gtlkvpg~~----It 312 (1189)
T KOG2041|consen 249 DPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS----------PYGHIVGTLKVPGSC----IT 312 (1189)
T ss_pred CCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec----------cchhheEEEecCCce----ee
Confidence 545554333 36688999999999999998653 344441 222336666666655 99
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE
Q 005235 683 DCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 683 ~l~fspdg~~L~s~g~Dg~Irl 704 (707)
+++|-..|-.++.+- |+.|.+
T Consensus 313 ~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred eeEEcCCceEEEEEe-cceEEE
Confidence 999988776666553 566654
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=6e-07 Score=96.06 Aligned_cols=281 Identities=16% Similarity=0.168 Sum_probs=179.1
Q ss_pred EEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc------------
Q 005235 401 RIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP------------ 467 (707)
Q Consensus 401 rIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~------------ 467 (707)
.+|.-.+...-..+.. .-++..++|||.| .+++...-..|.+|.-........-....+....|+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G--~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLG--TYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcc--hheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccC
Confidence 3455544444344442 6788999999999 577777777888998777654443344444444443
Q ss_pred --------ccccCCCCcEEEEecCCccceE-EeccCCC--eE-EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 468 --------TAPDDNMASIVSWLQHDKLDGI-RLRHFKM--VS-SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 468 --------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~--V~-~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
+.....+..+.+||..++.... ...-..+ .. -+.|+-+..|+|-...+ .+.||++...-.. .+
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~----sl~i~e~t~n~~~-~p 167 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS----SLYIHEITDNIEE-HP 167 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC----eEEEEecCCcccc-Cc
Confidence 2223344579999998876644 2222222 33 57888888888766432 8999998444444 67
Q ss_pred e-ccC-CCeEEEEEeCCC--CEEEEE------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE------
Q 005235 536 F-KLH-GLPVSSVFHPTR--SIFFVS------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS------ 599 (707)
Q Consensus 536 ~-~~~-~~V~~v~fspd~--~~l~v~------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs------ 599 (707)
+ ... ..|+...|+|.+ ..|+.- ..+.+++|.+..+..+.+-.--...=..+.|++.|++|++--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 7 333 678899999964 344442 258999999987765544322222235688999998876531
Q ss_pred -----CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235 600 -----REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRG 672 (707)
Q Consensus 600 -----~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g 672 (707)
....++|+++... -+.....-.++|..++|.|.+..|++++ .+.++.++ ++..+ + .+..
T Consensus 248 nKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~------~lr~N-l-----~~~~ 313 (561)
T COG5354 248 NKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF------DLRGN-L-----RFYF 313 (561)
T ss_pred ccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeec------ccccc-e-----EEec
Confidence 1246888988743 3333335578999999999999877665 67788888 44444 1 1122
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEe
Q 005235 673 HTSSNGRGVMDCKFHPRQPWLFTAGAD---SVIRLYC 706 (707)
Q Consensus 673 h~~~~~~gV~~l~fspdg~~L~s~g~D---g~IrlWd 706 (707)
.... =..+.|+|.++|++.+|-| |.|-+|+
T Consensus 314 Pe~~----rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 314 PEQK----RNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred CCcc----cccccccCcccEEEEecCCccccceEEec
Confidence 2222 3456788888888887765 4566664
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-07 Score=96.51 Aligned_cols=255 Identities=15% Similarity=0.196 Sum_probs=166.6
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEec---CCccce--EEe
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDG--IRL 491 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~---~~~~~~--~~~ 491 (707)
.+.|.+|.|...|+ .|++|..+|.|.++.-..... +.-..+.. ...... ...
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~----------------------~ey~~~t~fqshepEFDYLkSl 81 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK----------------------GEYNFQTEFQSHEPEFDYLKSL 81 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc----------------------cceeeeeeeeccCcccchhhhh
Confidence 56789999999995 788888999999886332110 00000000 000000 011
Q ss_pred ccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCcee----------------------------------eee
Q 005235 492 RHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLSH----------------------------------RIP 535 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~~----------------------------------~~~ 535 (707)
.-...|..+.|.++++ .|+....|. +|++|-+...... .+.
T Consensus 82 eieEKinkIrw~~~~n~a~FLlstNdk---tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLAEFLLSTNDK---TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhceecCCCCccEEEEecCCc---ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 2345788999998764 566666666 9999987543211 022
Q ss_pred e--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC-eE--EEEEeCCC-----CCeEEEEEcCCC-CEEEEEECCCcE
Q 005235 536 F--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ-RL--IKKLETGL-----KEVSSIAIHPAG-DNLIVGSREGKL 604 (707)
Q Consensus 536 ~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~-~~--~~~l~~~~-----~~I~sl~~spdg-~~L~sGs~Dg~I 604 (707)
+ .|.-.|.++.++.|+..++++.|=.|-+|++.-- +. +-.++++. --|++..|||.. +.++-.|..|+|
T Consensus 159 ~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 2 4556789999999999999999999999998742 22 22233332 238899999976 566778889999
Q ss_pred EEEECCCCCcce---EEee------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235 605 CWFDMDLSSKPY---RVLK------------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669 (707)
Q Consensus 605 ~vwDl~~~~~~~---~~l~------------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~ 669 (707)
++.||+...-+- +.+. .--..|..|.|+++|+++++-+ =-+|+|||+. +.. .|+.+
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n----me~----~pv~t 309 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN----MEA----KPVET 309 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc----ccC----CcceE
Confidence 999998432111 1111 1124688999999999998753 3689999652 111 24566
Q ss_pred eeCCCCCC-----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 670 LRGHTSSN-----------GRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 670 l~gh~~~~-----------~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
..-|..-. -..-..|+|+.++..++|||....+++++
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 66553210 01125689999999999999999999987
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.84 E-value=1.1e-06 Score=96.28 Aligned_cols=247 Identities=15% Similarity=0.092 Sum_probs=152.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc-cee----
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK-DLL---- 462 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~-~v~---- 462 (707)
...++.++.+|.|..+|..+|+.+......+.+.+.....++ .+++++.++.|..||..++......... ...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 457888899999999999999998877765544332222234 5777888999999999887642221110 000
Q ss_pred -----eecccccccCCCCcEEEEecCCccceEEec--cCC---C------e-EEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235 463 -----HVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFK---M------V-SSVEWHRRGDYLSTVMPAGESRAIFMHQ 525 (707)
Q Consensus 463 -----~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~---~------V-~~v~~sp~g~~lat~s~dg~~~~V~Iwd 525 (707)
...-.+..+..++.+..++..++...-... ... . + .+..+ .+..+++++.++ .+..+|
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g---~l~a~d 257 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQG---RVAALD 257 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCC---EEEEEE
Confidence 000013445566777777776554322111 000 0 0 11111 356777788777 999999
Q ss_pred CCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCc
Q 005235 526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGK 603 (707)
Q Consensus 526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~ 603 (707)
..++... ....... ...+. ..+..+++++ +|.|..+|..+++.+..... ......+..+ .+.+|++++.+|.
T Consensus 258 ~~tG~~~-W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 258 LRSGRVL-WKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred CCCCcEE-EeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence 9888655 3332111 11222 2355666666 89999999999988766532 2222333333 3679999999999
Q ss_pred EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEE
Q 005235 604 LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vw 650 (707)
|+++|..++ +.+..+..+...+.. .++. ++ .|+.++.||.|+.|
T Consensus 332 l~~~d~~tG-~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDG-SFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCC-CEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 999999887 666677665544332 2332 33 47788899999876
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=2.2e-06 Score=91.80 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=135.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCc--------EEEEEEccCCCccEEEEE-e-CCeEEEEECCCCCchhccc---cccee
Q 005235 396 TDGTVRIWEVESGRCLRVLEIGEA--------IQYVAWNPLPELPVLAVS-V-GQDVLILNTGLGNEEEQRR---VKDLL 462 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~~~--------V~~v~~spdg~~~lla~s-~-d~~V~lwd~~~~~~~~~~~---~~~v~ 462 (707)
.+..|.|||+.|++.+..+..... ...++++|||. .++++. . ++.|.++|+.++...-.-. ...++
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 688999999999999999886333 34889999994 455444 3 6899999998875421111 11111
Q ss_pred eeccc-ccccCCCCcEEEEecCCccc-eE---EeccC--CCeE-EEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 463 HVETP-TAPDDNMASIVSWLQHDKLD-GI---RLRHF--KMVS-SVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 463 ~~~~~-~~~~~~d~~i~iW~~~~~~~-~~---~~~h~--~~V~-~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
..+-. ....+.|+..........-. .. ..-+. ..+. .-.|.+ +|.++.+... | .|.+.|++......
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~ 229 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKF 229 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C---eEEEEecCCCccee
Confidence 11000 11122333333322221100 00 11011 0000 003445 7777666555 6 99999975543221
Q ss_pred ----eee--c------cCCCeEEEEEeCCCCEEEEEe-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235 534 ----IPF--K------LHGLPVSSVFHPTRSIFFVST-----------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590 (707)
Q Consensus 534 ----~~~--~------~~~~V~~v~fspd~~~l~v~s-----------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp 590 (707)
..+ . ..+.++-++++|+++.++++. .+.|.++|+.+++.+..+..+ ..+..|+++|
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~ 308 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQ 308 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECC
Confidence 111 1 123455699999999999853 258999999999999998876 5789999999
Q ss_pred CCC-EEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235 591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l 619 (707)
||+ +|++.+ .++.|.++|+.++ +.++.+
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 999 777666 5788999999877 666665
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=6.6e-06 Score=87.32 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=181.8
Q ss_pred eCCCcEEEEeCCCCeEEEEEecC-------------CcEEEEE-Ecc-CCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 395 STDGTVRIWEVESGRCLRVLEIG-------------EAIQYVA-WNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~-------------~~V~~v~-~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
+..|.|.++|..+.+.. .+..+ .++.-+. |++ +| .+++..+-|...|.+.-.+-....++..
T Consensus 284 q~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~G--d~ia~VSRGkaFi~~~~~~~~iqv~~~~ 360 (668)
T COG4946 284 QNAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG--DYIALVSRGKAFIMRPWDGYSIQVGKKG 360 (668)
T ss_pred ecCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCC--cEEEEEecCcEEEECCCCCeeEEcCCCC
Confidence 44567999998775432 22221 1111222 443 34 3555555666777665544322222222
Q ss_pred ceeeecc-----cccccCCCC-cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 460 DLLHVET-----PTAPDDNMA-SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 460 ~v~~~~~-----~~~~~~~d~-~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
.+--..+ ..+.+..+| .+.+++..+.+.......-+.|.++..+++|++++++.... .+.+.|+.++..+
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~---el~vididngnv~- 436 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF---ELWVIDIDNGNVR- 436 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce---EEEEEEecCCCee-
Confidence 2211111 256677777 89999999998877888889999999999999999988766 8999999999875
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe-----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-------
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST-----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR------- 600 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s-----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~------- 600 (707)
..= ...+-|+.+.|||++++||-+- ...|++||+..++....- .....=.+-+|.|+|++|..-|.
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEeccccCCCC
Confidence 222 5678899999999999999874 478999999988765443 33344567789999998866543
Q ss_pred CCcEEEEECCCCCcceEEee--cCCCCE----------------EEEE--EcC----CCC-EEEEEeCCCcEEEEecccc
Q 005235 601 EGKLCWFDMDLSSKPYRVLK--CHPKDI----------------TNVA--FHR----SYP-LFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 601 Dg~I~vwDl~~~~~~~~~l~--~h~~~I----------------~~va--fsp----dg~-llaSgs~Dg~I~Vwd~~~~ 655 (707)
|..+.=|....-.+|+-..- +..++. ..+. ..| .+. ..+++-.+|.|.+|...+.
T Consensus 516 Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~ 595 (668)
T COG4946 516 DRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIH 595 (668)
T ss_pred CeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeecc
Confidence 44443333332223332211 111100 0000 011 122 3345556777887765543
Q ss_pred cCCCCC----Ccccce--EEeeCCCCC-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 656 SDLNQN----PLIVPL--EILRGHTSS-NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 656 ~Dl~~~----~~~~pl--~~l~gh~~~-~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+....- +..-.+ ..+...... -...|.++..|+|+..|+. -.||.++++++
T Consensus 596 Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~v 653 (668)
T COG4946 596 GEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDV 653 (668)
T ss_pred chhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEec
Confidence 322211 110001 111111000 0123899999999999887 78999999875
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.77 E-value=2.7e-07 Score=94.35 Aligned_cols=238 Identities=15% Similarity=0.200 Sum_probs=162.5
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
+.|+....-|..+ .+++++.|.+++||--....+ .| ..+......++
T Consensus 25 d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q--------------------------~w------psI~~~mP~~~ 71 (404)
T KOG1409|consen 25 DDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQ--------------------------YW------PSIYHYMPSPC 71 (404)
T ss_pred hhhhhheeccCCC-CeEEccccceeeeEEeccccc--------------------------cC------chhhhhCCCCc
Confidence 3444444445442 588888888888886322111 11 01122346788
Q ss_pred EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee---eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC-CCCe
Q 005235 498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH---RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL-LKQR 571 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~---~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl-~~~~ 571 (707)
+++++++....|+++-.+| ++.-+.++..-.. .+.. .|...+..+.|+-...++++++ |..+ .|-. +.+.
T Consensus 72 ~~~~y~~e~~~L~vg~~ng---tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~ 147 (404)
T KOG1409|consen 72 SAMEYVSESRRLYVGQDNG---TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGN 147 (404)
T ss_pred eEeeeeccceEEEEEEecc---eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCC
Confidence 9999999999999999888 8877776543221 0333 7889999999998888898888 5544 4443 3333
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.+..+.-. .+.+++.+.-. +..+|...|.|....+.. .-.++.++.+|...+.+++|.+...+|.+|+.|..|.+|
T Consensus 148 ~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 148 RLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred cccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 22111100 11122222211 667777778776555432 226788999999999999999999999999999999999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
| +..++.+ ...+.+|... |..+..-+.-+.|++++.||.|-+|+.
T Consensus 225 d------igg~~g~--~~el~gh~~k----V~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 225 D------IGGRKGT--AYELQGHNDK----VQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred e------ccCCcce--eeeeccchhh----hhhhhhhhhheeeeeccCCCeEEEEec
Confidence 5 4444432 4578899887 998888888889999999999999984
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=9.7e-06 Score=97.78 Aligned_cols=236 Identities=15% Similarity=0.193 Sum_probs=153.4
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEE----ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLIL----NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR 492 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lw----d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~ 492 (707)
.+.|.++.|.++.+ .++++..+|.|.+. +..... ..+.-.
T Consensus 75 ~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~-----------------------------------~E~VG~ 118 (928)
T PF04762_consen 75 NDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDE-----------------------------------IEIVGS 118 (928)
T ss_pred CCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCce-----------------------------------eEEEEE
Confidence 46899999999984 78888889998887 332221 112224
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-------------C----------ceeeeee-c-----------
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-------------K----------LSHRIPF-K----------- 537 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-------------~----------~~~~~~~-~----------- 537 (707)
....|.+++||||+..|+.+..++ +|.+..-.- + +.. ..| +
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~---~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF~Gs~gK~aa~~~~ 194 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEG---NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE-TQFHGSAGKAAARQLR 194 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCC---EEEEEeccceEEEEeecCccccCCCceeeeccCccc-CccCcchhhhhhhhcc
Confidence 467899999999999999998877 666554210 0 000 111 0
Q ss_pred -------------cCCCeEEEEEeCCCCEEEEEe-----C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235 538 -------------LHGLPVSSVFHPTRSIFFVST-----K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 538 -------------~~~~V~~v~fspd~~~l~v~s-----d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s 597 (707)
....-..++|-.||.+|++++ + +.||||+-. |.+..+-..-.+--.+++|.|.|++||+
T Consensus 195 ~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 195 DPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 111345688999999999865 2 579999955 7666555544444568999999999988
Q ss_pred EEC---CCcEEEEECCCCCcceEEe--e--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235 598 GSR---EGKLCWFDMDLSSKPYRVL--K--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670 (707)
Q Consensus 598 Gs~---Dg~I~vwDl~~~~~~~~~l--~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l 670 (707)
... ...|.+|.-. | -....| + .....|..++|++++.+||..-.|. |++|....|. .-.-+.+
T Consensus 274 ~q~~~~~~~VvFfErN-G-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei 343 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERN-G-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEI 343 (928)
T ss_pred EEEcCCCcEEEEEecC-C-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEE
Confidence 754 3446777643 3 112222 2 3356799999999999999987666 9999766443 1112333
Q ss_pred eCCCCCCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEe
Q 005235 671 RGHTSSNGRGVMDCKFHPRQPW-LFTAGADSVIRLYC 706 (707)
Q Consensus 671 ~gh~~~~~~gV~~l~fspdg~~-L~s~g~Dg~IrlWd 706 (707)
.-.... ++..+.|||..+. |...+.+|.+..++
T Consensus 344 ~~~~~~---~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 344 RFSSSE---SVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EccCCC---CCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 322221 2555999997664 55555556665543
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=3.1e-06 Score=94.48 Aligned_cols=307 Identities=12% Similarity=0.134 Sum_probs=181.8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC---ccEEEEEeCCeEEEEECCCCCchhcc-cccc
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE---LPVLAVSVGQDVLILNTGLGNEEEQR-RVKD 460 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~---~~lla~s~d~~V~lwd~~~~~~~~~~-~~~~ 460 (707)
..+-+++++...|.|.|||...+..+..+.. ..+|..++|-+..+ ..|++.....+|.+|+..+|...... ....
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 3455888999999999999999888877777 78899999977432 25777788899999999998653322 1112
Q ss_pred eee-ecc---c---ccccCCCCcEEEEecC--------CccceEEeccCC----------------C---------eEEE
Q 005235 461 LLH-VET---P---TAPDDNMASIVSWLQH--------DKLDGIRLRHFK----------------M---------VSSV 500 (707)
Q Consensus 461 v~~-~~~---~---~~~~~~d~~i~iW~~~--------~~~~~~~~~h~~----------------~---------V~~v 500 (707)
+++ ..+ . +..-+..|.+.+.+.- +++..+...|.. . ...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 222 111 0 2222233333333221 111111112211 0 1235
Q ss_pred EEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC-------
Q 005235 501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK------- 569 (707)
Q Consensus 501 ~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~------- 569 (707)
+|+|.-+.++..... +.+.|+|+.-..+. ... -..+.+.-+.+-|+ ...|++.. +|.+.+|--+.
T Consensus 237 af~p~~rn~lfi~~p---rellv~dle~~~~l-~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFP---RELLVFDLEYECCL-AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hcChhhhceEEEEec---cceEEEcchhhcee-EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 677755444433332 38999999877765 444 22333344444444 44566666 77777775432
Q ss_pred ---------CeE---EEEEe------------------------------------------------------------
Q 005235 570 ---------QRL---IKKLE------------------------------------------------------------ 577 (707)
Q Consensus 570 ---------~~~---~~~l~------------------------------------------------------------ 577 (707)
+.. ++.+.
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v 392 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV 392 (1062)
T ss_pred cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence 110 00000
Q ss_pred ------------CCCCCeEEEEEcC-----------CC-------CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235 578 ------------TGLKEVSSIAIHP-----------AG-------DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 578 ------------~~~~~I~sl~~sp-----------dg-------~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
+|....++...+| .| .++|+|+..|+|.++|+.++ ...+.+..|++.|.
T Consensus 393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~Vk 471 (1062)
T KOG1912|consen 393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVK 471 (1062)
T ss_pred hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhccccccee
Confidence 0111112221111 12 26789999999999999887 77888999999999
Q ss_pred EEEEcCCCCEEEEEe---------CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 628 NVAFHRSYPLFASCS---------DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 628 ~vafspdg~llaSgs---------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
++.|-....++-.+. .-+.+.|- |+.++-. +.++|-...+...|..+..|.-+++|+..=.
T Consensus 472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vt------dLrtGls----k~fR~l~~~despI~~irvS~~~~yLai~Fr 541 (1062)
T KOG1912|consen 472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT------DLRTGLS----KRFRGLQKPDESPIRAIRVSSSGRYLAILFR 541 (1062)
T ss_pred eeeeccceeEEEeeeccccccccceeeeEEEE------Ecccccc----cccccCCCCCcCcceeeeecccCceEEEEec
Confidence 999977665443222 11223344 4545432 3444444333445999999999999999988
Q ss_pred CCcEEEEeC
Q 005235 699 DSVIRLYCH 707 (707)
Q Consensus 699 Dg~IrlWdl 707 (707)
|--+-+|++
T Consensus 542 ~~plEiwd~ 550 (1062)
T KOG1912|consen 542 REPLEIWDL 550 (1062)
T ss_pred ccchHHHhh
Confidence 888888874
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=1.7e-07 Score=94.33 Aligned_cols=260 Identities=15% Similarity=0.160 Sum_probs=163.3
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCe-EE----EEEec-------------CCcEEEEEEccCCC-ccEEEEEeCCeEEE
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGR-CL----RVLEI-------------GEAIQYVAWNPLPE-LPVLAVSVGQDVLI 444 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~-~l----~~l~~-------------~~~V~~v~~spdg~-~~lla~s~d~~V~l 444 (707)
|...+.++++|...|.|.++.-.... |- ..|+. ...|..+.|..++. ..++.++.+.+|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 66777899999999999999865432 11 11221 56789999987653 36888889999999
Q ss_pred EECCCCCchhcccccceeeecccccccC---CCCcEEEEecCC-------ccceE-EeccCCCeEEEEEcCCCCEEEEEe
Q 005235 445 LNTGLGNEEEQRRVKDLLHVETPTAPDD---NMASIVSWLQHD-------KLDGI-RLRHFKMVSSVEWHRRGDYLSTVM 513 (707)
Q Consensus 445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~---~d~~i~iW~~~~-------~~~~~-~~~h~~~V~~v~~sp~g~~lat~s 513 (707)
|.+......+...+. ++-+|..+-++ +...+++=.+.. ....+ ...|..-|.+++|+.+...++++.
T Consensus 114 WKiyeknlk~va~nn--ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD 191 (460)
T COG5170 114 WKIYEKNLKVVAENN--LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD 191 (460)
T ss_pred eeeecccchhhhccc--cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc
Confidence 997654322211111 01111000000 000011000000 00111 246888899999999988888765
Q ss_pred CCCCccEEEEEECCCCceeeeee----cc-----CCCeEEEEEeCCCCEE--EEEeCCeEEEEECCCCeEE----EE---
Q 005235 514 PAGESRAIFMHQLSKKLSHRIPF----KL-----HGLPVSSVFHPTRSIF--FVSTKKNIRVYDLLKQRLI----KK--- 575 (707)
Q Consensus 514 ~dg~~~~V~Iwdl~~~~~~~~~~----~~-----~~~V~~v~fspd~~~l--~v~sdg~I~iwDl~~~~~~----~~--- 575 (707)
. - .|.+|++...... ..+ .+ ..-|++..|||....+ .+++.|.|++-|++...+- +.
T Consensus 192 d-L---rINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 192 D-L---RINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred c-e---eeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 3 2 7899998754332 221 22 3468899999975433 3344899999999843211 00
Q ss_pred ---------EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC------------CCE---EEEEE
Q 005235 576 ---------LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP------------KDI---TNVAF 631 (707)
Q Consensus 576 ---------l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~------------~~I---~~vaf 631 (707)
+..-...|+.+.|+++|+++++-++- +|.+||+.....|++++.-|. .+| ..+.|
T Consensus 267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisf 345 (460)
T COG5170 267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISF 345 (460)
T ss_pred ccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEe
Confidence 11223558889999999999988774 899999998888999886552 334 35788
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 005235 632 HRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 632 spdg~llaSgs~Dg~I~Vwd 651 (707)
|.+...+.+||.....-|+-
T Consensus 346 Sgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 346 SGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred cCCcccccccccccceeeec
Confidence 88888888888766666653
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=2.5e-06 Score=84.66 Aligned_cols=239 Identities=9% Similarity=0.016 Sum_probs=153.8
Q ss_pred CCCcEEEEeCCCCe--EEEEEecCCcEEEEEEccCC----CccEEEEEeCCeEEEEECCCCCchhcc---ccc------c
Q 005235 396 TDGTVRIWEVESGR--CLRVLEIGEAIQYVAWNPLP----ELPVLAVSVGQDVLILNTGLGNEEEQR---RVK------D 460 (707)
Q Consensus 396 ~DgtVrIWd~~tg~--~l~~l~~~~~V~~v~~spdg----~~~lla~s~d~~V~lwd~~~~~~~~~~---~~~------~ 460 (707)
....|-+|++-+.. .+..+ ..|.|.|.. ...|+++|..|...+|.+.+.+..+.. +.. .
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 33457788876543 23333 334454421 125777778999999999876543322 111 2
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e-ee-
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I-PF- 536 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~-~~- 536 (707)
.....+.+..++.+.++++..+............ -.+.++++++++.++++++... .|..|.+....... . ..
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEec
Confidence 2223333666778888888887766554322221 3488999999999999999866 89999887654321 2 22
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-----EEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEE
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-----KKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFD 608 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-----~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwD 608 (707)
.....-.+..|+.....+|+++ ||++.|||++..... .+-..|.+.+..+.|++.| ++|+..-.=+.+.+.|
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 4455667889999999999999 899999999864322 1223477889999999977 5666666667899999
Q ss_pred CCCCCcceEE------eecCCC-CEEEEEEcCCCCEEEEEeC
Q 005235 609 MDLSSKPYRV------LKCHPK-DITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 609 l~~~~~~~~~------l~~h~~-~I~~vafspdg~llaSgs~ 643 (707)
+++....... +..|.. .|..-.|+.++.-+.+.+.
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 9987432211 122322 2666667666654444443
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=2.7e-05 Score=80.10 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=115.1
Q ss_pred eEEEEEc-CCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEe-C--------C
Q 005235 497 VSSVEWH-RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVST-K--------K 560 (707)
Q Consensus 497 V~~v~~s-p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~s-d--------g 560 (707)
...+++. ++|.+ +.+... .+.++|+.++... ..+ . ....++.+++.|+|.+.++.. . +
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~----~~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSG----GIAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEE-EEEETT----CEEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEE-EEEEcC----ceEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 6777777 56554 444443 4566698887654 222 2 345678999999999777654 2 4
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc------ceEEeecCCCCEEEEEEcC
Q 005235 561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMDLSSK------PYRVLKCHPKDITNVAFHR 633 (707)
Q Consensus 561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~~~~~------~~~~l~~h~~~I~~vafsp 633 (707)
.|..++.. ++..... ..-...+.|+|+|+|+.|+ +-+..++|..|+++.... .+..+....+..-.+++..
T Consensus 116 ~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp EEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred ceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 57777877 5543333 3345678999999999776 556778899999975432 1112222223478899999
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE-cCCCCEEEEEe
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF-HPRQPWLFTAG 697 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f-spdg~~L~s~g 697 (707)
+|++.++....+.|.+++- . +.+ +..+.-.... +++++| -++...|+..+
T Consensus 194 ~G~l~va~~~~~~I~~~~p------~-G~~---~~~i~~p~~~----~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDP------D-GKL---LREIELPVPR----PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TS-EEEEEETTTEEEEEET------T-SCE---EEEEE-SSSS----EEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECC------C-ccE---EEEEcCCCCC----EEEEEEECCCCCEEEEEe
Confidence 9999888888999999953 2 332 4444444334 999999 47777776554
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.62 E-value=8.6e-05 Score=76.34 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=140.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEc-cCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWN-PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~s-pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
..+.++++.-..+.|..|+..++... .+.... ..++++. +++ .++++.. +.+.++|+.++....
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g--~l~v~~~-~~~~~~d~~~g~~~~---------- 74 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDG--RLYVADS-GGIAVVDPDTGKVTV---------- 74 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECTTS--EEEEEET-TCEEEEETTTTEEEE----------
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEccCC--EEEEEEc-CceEEEecCCCcEEE----------
Confidence 35567788778899999999887653 344444 6677777 676 4666555 445555876652110
Q ss_pred cccccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCC---c--cEEEEEECCCCceeeeeecc
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGE---S--RAIFMHQLSKKLSHRIPFKL 538 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~---~--~~V~Iwdl~~~~~~~~~~~~ 538 (707)
+.... ... .....+.+++.++|+..++...... . +.|..++.. +... .....
T Consensus 75 --------------~~~~~------~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~ 132 (246)
T PF08450_consen 75 --------------LADLP------DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADG 132 (246)
T ss_dssp --------------EEEEE------TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEE
T ss_pred --------------Eeecc------CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecC
Confidence 00000 001 3456788999999997777665421 1 367777776 4432 33355
Q ss_pred CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 539 HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
-...+.++|+|+++.|+++. .+.|..|++.. . +.+..+....+..-.+++..+|++.++....+.|.++|.
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 66788999999999888765 68899999863 2 112223333234789999999998888888899999998
Q ss_pred CCCCcceEEeecCCCCEEEEEEc-CCCC-EEEEE
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFH-RSYP-LFASC 641 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafs-pdg~-llaSg 641 (707)
+ + +.+..+......+++++|. ++.. +++|.
T Consensus 213 ~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 213 D-G-KLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp T-S-CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred C-c-cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 7 5 6677776665689999994 5544 44443
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.58 E-value=8.1e-06 Score=82.17 Aligned_cols=178 Identities=18% Similarity=0.174 Sum_probs=117.8
Q ss_pred CCeEEEEEcC---CCC-EEEEEeCCCCccEEEEEECCCCceeeeee-c---cCC---CeEEEEEeCCCCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHR---RGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF-K---LHG---LPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp---~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~---~~~---~V~~v~fspd~~~l~v~s-dg~I 562 (707)
+.+..+.|.. +|. .++-+-..| .|.++........ ..| + ..- ...++.|++.+..++++. +|.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G---~i~~~r~~~~~ss-~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARG---QIQLYRNDEDESS-VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSI 145 (339)
T ss_pred cccceeeeeeccCCccceeeeccccc---eEEEEeeccceee-eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence 3445555542 334 333344444 7777766544333 222 1 111 245778899998888886 7888
Q ss_pred EEEECCCCeEE--EEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcce-EEeecCCCCEEEEEEcC-CCCE
Q 005235 563 RVYDLLKQRLI--KKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPY-RVLKCHPKDITNVAFHR-SYPL 637 (707)
Q Consensus 563 ~iwDl~~~~~~--~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~-~~l~~h~~~I~~vafsp-dg~l 637 (707)
.+.+.....+. ++++.|.-.+....|+... +.+.+|+.|+.+..||++.....+ ...+-|...|.++.-+| ...+
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 86665555443 4788898888888886543 688999999999999999443333 33567888999998887 4669
Q ss_pred EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
+++|+.|-.|++||.+..+ . |+..-. .++||+.+.++|.
T Consensus 226 I~TGsYDe~i~~~DtRnm~----k----Pl~~~~-----v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMG----K----PLFKAK-----VGGGVWRIKHHPE 264 (339)
T ss_pred EEEeccccceeeeehhccc----C----ccccCc-----cccceEEEEecch
Confidence 9999999999999876221 1 221111 1245999999984
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=7e-07 Score=93.22 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=100.8
Q ss_pred eEEEEEeCCCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc---EEEEECCCCC
Q 005235 542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGK---LCWFDMDLSS 613 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~---I~vwDl~~~~ 613 (707)
+..+..++.+.+|+++. +....+++.... +++...... ..-+++.|-.+...+.++..-|. +.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 44566788888999887 455445555432 333333322 23344445444555555444444 455554432
Q ss_pred cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693 (707)
Q Consensus 614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L 693 (707)
+...+-+|-..++.|+|+||++.++++..|..|+|-+.....++. .-+-||+.. |..++.-++.. |
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--------sfclGH~eF----VS~isl~~~~~-L 208 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--------SFCLGHKEF----VSTISLTDNYL-L 208 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh--------hhccccHhh----eeeeeeccCce-e
Confidence 234456899999999999999999999999999998554222221 224589988 99999988765 8
Q ss_pred EEEeCCCcEEEEeC
Q 005235 694 FTAGADSVIRLYCH 707 (707)
Q Consensus 694 ~s~g~Dg~IrlWdl 707 (707)
+|+|.|++|++||+
T Consensus 209 lS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDI 222 (390)
T ss_pred eecCCCCcEEEEec
Confidence 99999999999985
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=5.8e-06 Score=82.15 Aligned_cols=191 Identities=9% Similarity=-0.057 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe--CCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH--PTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLK 581 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs--pd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~ 581 (707)
+..+||.|+..| ...+|.+.+........ .+...|.-+.=. ...+.+++..|.++++.++.-+.....+....-
T Consensus 83 kc~~la~gG~~g---~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASG---QFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cccEEEeccccc---eeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccc
Confidence 456899998877 99999998766541222 333333221110 112334444488888888875543333332223
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC
Q 005235 582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYR-VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN 659 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~-~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~ 659 (707)
.+.+++++++++++++.+....|..|.++..+. ..+ .+..-+..-.+..|+.....||+++.||++.|||++...-.+
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 388999999999999999999999999986532 222 222334455788999999999999999999999876322111
Q ss_pred CCCcccceEEeeCCCCCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEe
Q 005235 660 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP--WLFTAGADSVIRLYC 706 (707)
Q Consensus 660 ~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~--~L~s~g~Dg~IrlWd 706 (707)
.. .-.+-..|.+. +..+.|++.|. +|+..-.=+.+.+-|
T Consensus 240 ~~----~sstrp~hnGa----~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 240 AE----ISSTRPHHNGA----FRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred hh----hcccCCCCCCc----eEEEEecCCCcceEEEEecCcceEEEEE
Confidence 11 11122235555 99999999776 344333334444443
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=5.8e-05 Score=76.29 Aligned_cols=228 Identities=15% Similarity=0.155 Sum_probs=130.3
Q ss_pred EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEE
Q 005235 422 YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVE 501 (707)
Q Consensus 422 ~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~ 501 (707)
.++.+.+| .++|+-.|..|.|=.....-..+ +..+.+ .....-.=..++
T Consensus 2 ~~~~~~~G--k~lAi~qd~~iEiRsa~Ddf~si----------------------~~kcqV-------pkD~~PQWRkl~ 50 (282)
T PF15492_consen 2 HLALSSDG--KLLAILQDQCIEIRSAKDDFSSI----------------------IGKCQV-------PKDPNPQWRKLA 50 (282)
T ss_pred ceeecCCC--cEEEEEeccEEEEEeccCCchhe----------------------eEEEec-------CCCCCchheEEE
Confidence 35677888 69999999888775543321110 111111 111122346799
Q ss_pred EcCCCCEEEEEeCCCCccEEEEEECCCCceeeee----e--ccCCCeEEEEEeCCC-------CEEEEEeCCeEEEEECC
Q 005235 502 WHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F--KLHGLPVSSVFHPTR-------SIFFVSTKKNIRVYDLL 568 (707)
Q Consensus 502 ~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~--~~~~~V~~v~fspd~-------~~l~v~sdg~I~iwDl~ 568 (707)
||||+..||.+...| +|+++|+........+ + .....|..+.|-+.. .+|++...|.++-|-+.
T Consensus 51 WSpD~tlLa~a~S~G---~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 51 WSPDCTLLAYAESTG---TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred ECCCCcEEEEEcCCC---eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 999999999999888 9999999875432111 1 223456677776533 34555558888877753
Q ss_pred C-----CeEEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE--
Q 005235 569 K-----QRLIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-- 638 (707)
Q Consensus 569 ~-----~~~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-- 638 (707)
. .+...++.. ....|+++.++|..++|++|+.... +.+ . -.+-...+++-..-.+.++.
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCCCcEEE
Confidence 2 233334332 3457999999999998888765422 000 0 01122233333332222211
Q ss_pred EEEeCCCcE------EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 639 ASCSDDCTA------YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 639 aSgs~Dg~I------~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++.+.|+.. .+|.+ . .++.+... ....-+|..|..||||..||+...+|.|.||++
T Consensus 197 v~~~~~~~~~~~~~~~~~~~------~------~~~~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRI------P------SFKFFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred ccccCccccccccccceeec------c------ceeeeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 122222211 22211 1 11122111 111235999999999999999999999999986
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=2.4e-06 Score=89.35 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=105.0
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~ 458 (707)
.++..+.++|.+..+....+++..... ++..+.....-+++.|..+.. ..+.+-..|.+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~---------------- 131 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDV---------------- 131 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCc----------------
Confidence 355667788888777776666654322 232322233333344433331 22222222222
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
..+.+|+..........+|-+.++.|+|+||+.+++++..|+ .|+|-........ ..|
T Consensus 132 ----------------~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE---kIRvs~ypa~f~I-esfcl 191 (390)
T KOG3914|consen 132 ----------------YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE---KIRVSRYPATFVI-ESFCL 191 (390)
T ss_pred ----------------eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc---eEEEEecCcccch-hhhcc
Confidence 233344444333344779999999999999999999999998 9999888776665 555
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe
Q 005235 537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~ 577 (707)
+|+.-|..++.-++..++-+++|++|++||+.+|+++.++.
T Consensus 192 GH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 192 GHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 89999999999887664444449999999999998886654
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=4.1e-05 Score=89.95 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=148.2
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-------
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV------- 458 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~------- 458 (707)
....-++.+..+|.|.+-|.++......=.....|.+++||||++ .++.++..+++.+.. .+..+....+.
T Consensus 78 ~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~ 155 (1265)
T KOG1920|consen 78 ADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEPIAEKPLDADDERK 155 (1265)
T ss_pred cccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccchhccccccccccc
Confidence 344566677888999999988776543333488999999999994 444444555555443 33222111111
Q ss_pred cceeeeccc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCC-C-ccEEEEEECCCCcee
Q 005235 459 KDLLHVETP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAG-E-SRAIFMHQLSKKLSH 532 (707)
Q Consensus 459 ~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg-~-~~~V~Iwdl~~~~~~ 532 (707)
.....++|. ..--++.|............. ....-.+.=++|+|-.+|.|||+..... . .+.|+|||-. +...
T Consensus 156 sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln 234 (1265)
T KOG1920|consen 156 SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN 234 (1265)
T ss_pred cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence 122233332 000000110000000000000 0001122335799999999999844221 1 3699999987 4443
Q ss_pred eeee-ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCC---CeEEEEEeCCCCCeEEEEEcCCCCEEEE---EECC
Q 005235 533 RIPF-KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLK---QRLIKKLETGLKEVSSIAIHPAGDNLIV---GSRE 601 (707)
Q Consensus 533 ~~~~-~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~---~~~~~~l~~~~~~I~sl~~spdg~~L~s---Gs~D 601 (707)
..- ...+.-.+++|-|.|..+++-. |+.|.+|.-.. +...-.+......+..++|+.+++.||+ ....
T Consensus 235 -s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 235 -STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN 313 (1265)
T ss_pred -cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeeccccc
Confidence 222 4455667899999999988742 67899997432 3333333334445899999999999988 4445
Q ss_pred CcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecc
Q 005235 602 GKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYP--LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 602 g~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~--llaSgs~Dg~I~Vwd~~ 653 (707)
..|.+|-+.+.. -..+.+....... +.|+|.-. +.+.+ .+|.+.++|..
T Consensus 314 ~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~-~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 314 SLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLR-ESGQRLVRDFA 365 (1265)
T ss_pred ceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEe-cCCcEEEEEEE
Confidence 559999886531 1122333333333 88998543 44444 77777777654
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.52 E-value=4.5e-07 Score=100.32 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=150.0
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc--CCCeEEEEEeC--CCCEEEEEe-CCeEEEEE
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL--HGLPVSSVFHP--TRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~--~~~V~~v~fsp--d~~~l~v~s-dg~I~iwD 566 (707)
...+.+..+..+|.|+-+|.++.-| +.+-|+...-...+-+.| .-.|-.+.|+| ..++-++.+ ...-.+|+
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g----l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG----LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC----eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 4567788899999999999999765 666777654332122222 23455677766 445555555 66777899
Q ss_pred CCC---CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 567 LLK---QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 567 l~~---~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
+.. +..-..+.+|...|+.+.|+|.. +.|++++.|-.+..||+++...++..+..-..+...|+|+-..+-+.+.+
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 875 35556678999999999999876 67899999999999999988888887776667778999998776666666
Q ss_pred CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235 643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl 707 (707)
....|+|||.+. +. .|+..+++|... |..++|..- -..+.+++.||+|++|+.
T Consensus 178 hg~~i~vwd~r~------gs--~pl~s~K~~vs~----vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 178 HGNDIFVWDLRK------GS--TPLCSLKGHVSS----VNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCCceEEEeccC------CC--cceEEeccccee----eehHHHhhhhhhhhcccCCCCceeeecc
Confidence 778899996543 32 268889999887 888888542 235789999999999984
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=8.4e-06 Score=91.09 Aligned_cols=234 Identities=12% Similarity=0.111 Sum_probs=158.8
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
.-.++.|+|.| |+|-++...|.+.|..+-. ....+..|...|+
T Consensus 17 N~~A~Dw~~~G---LiAygshslV~VVDs~s~q----------------------------------~iqsie~h~s~V~ 59 (1062)
T KOG1912|consen 17 NRNAADWSPSG---LIAYGSHSLVSVVDSRSLQ----------------------------------LIQSIELHQSAVT 59 (1062)
T ss_pred cccccccCccc---eEEEecCceEEEEehhhhh----------------------------------hhhccccCcccee
Confidence 35688999999 8888888889888854421 1123456788899
Q ss_pred EEEEcCCC------------CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC---C-CEEEEEe-CC
Q 005235 499 SVEWHRRG------------DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT---R-SIFFVST-KK 560 (707)
Q Consensus 499 ~v~~sp~g------------~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd---~-~~l~v~s-dg 560 (707)
.|.|.|-. -.||++...| .|.+||......+ .-+ .+..+++.++|-+. . .+|++-. -.
T Consensus 60 ~VrWap~~~p~~llS~~~~~lliAsaD~~G---rIil~d~~~~s~~-~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 60 SVRWAPAPSPRDLLSPSSSQLLIASADISG---RIILVDFVLASVI-NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred EEEeccCCCchhccCccccceeEEeccccC---cEEEEEehhhhhh-hhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 99987631 1345555555 9999999988877 777 88889999999774 3 3344444 79
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC------CcceEEeecCCC---------
Q 005235 561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLS------SKPYRVLKCHPK--------- 624 (707)
Q Consensus 561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~------~~~~~~l~~h~~--------- 624 (707)
+|.+|+..+|+.+.+........+|+.+.| +.+++..-+..|.|.+-+.-.. ++.++.-..|..
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 999999999999988887777788899998 5577877777888877765321 122332223322
Q ss_pred ---C-------------EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 625 ---D-------------ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 625 ---~-------------I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
. ...++|+|..+-++-..--..+.|+|. .-+.. +.+..-..+ |+.-+.|-|
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl------e~~~~---l~vvpier~----~akfv~vlP 282 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL------EYECC---LAVVPIERG----GAKFVDVLP 282 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc------hhhce---eEEEEeccC----CcceeEecc
Confidence 0 113678887764444445677999954 33322 333332222 155566666
Q ss_pred CC--CEEEEEeCCCcEEEEe
Q 005235 689 RQ--PWLFTAGADSVIRLYC 706 (707)
Q Consensus 689 dg--~~L~s~g~Dg~IrlWd 706 (707)
++ ..|++.-.||.+.+|-
T Consensus 283 ~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CCCcceEEEEecCCeEEEEE
Confidence 55 4799999999999983
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=0.00012 Score=80.84 Aligned_cols=291 Identities=12% Similarity=0.050 Sum_probs=161.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc--E----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA--I----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~--V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.+|.|.-+|..+|+.+........ + ..+... ++ .+++++.++.+..+|..++...-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GG--KVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CC--EEEEEcCCCEEEEEECCCCCCccc
Confidence 35788888999999999999999887765321 0 011221 23 577888889999999998865332
Q ss_pred cccc-ceeeec----ccccccCCCCcEEEEecCCccceEEeccCCCe------EEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235 456 RRVK-DLLHVE----TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV------SSVEWHRRGDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 456 ~~~~-~v~~~~----~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V------~~v~~sp~g~~lat~s~dg~~~~V~Iw 524 (707)
.... .+.+.. -.+..+..++.+..++..++...-......+. .+... .+..++.++.++ .+...
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g---~v~a~ 220 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNG---RVSAV 220 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCC---EEEEE
Confidence 2211 111100 01344556777777777665543222111110 01111 123455566666 78888
Q ss_pred ECCCCceeeeee---ccCC-----CeEEEEEeC--CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235 525 QLSKKLSHRIPF---KLHG-----LPVSSVFHP--TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD 593 (707)
Q Consensus 525 dl~~~~~~~~~~---~~~~-----~V~~v~fsp--d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~ 593 (707)
+..+++.. ..+ ...+ ....+..+| .+..+++++ ++.+..+|+.+++.+.+..... ...+.. .+.
T Consensus 221 d~~~G~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~--~~~ 295 (394)
T PRK11138 221 LMEQGQLI-WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAV--DGG 295 (394)
T ss_pred EccCChhh-heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEE--ECC
Confidence 88877654 222 1100 001111122 134455555 8999999999998776654321 122333 467
Q ss_pred EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235 594 NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
.|++++.+|.|..+|..++....+.-..-.....+... .+..|+.++.||.|.++|. .++.. +....-.
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~------~tG~~---~~~~~~~ 364 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR------EDGRF---VAQQKVD 364 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC------CCCCE---EEEEEcC
Confidence 88888999999999998874322211100111222222 2456778889999999954 34433 2222221
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
... -.....+ .+..|+.++.||.|..+++
T Consensus 365 ~~~---~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SSG---FLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCc---ceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 111 0122223 2447888899999988763
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.4e-06 Score=93.43 Aligned_cols=270 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred CcEEEEEeCCCcEEEEeCCC-------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 388 CYLEYKGSTDGTVRIWEVES-------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
.+-++++|.|.+|++|.+.. ..|..+++. ..+|+.+.|-.+- -..++.|+.|.+||+-.+....+
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l---r~i~ScD~giHlWDPFigr~Laq---- 819 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL---RSIASCDGGIHLWDPFIGRLLAQ---- 819 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc---ceeeeccCcceeecccccchhHh----
Confidence 45678899999999999853 346666665 7899999998886 35567888999999866543211
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee--
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
..|.. ..+..+.|.|+- +-+...++.+ +... +|+++|.+..... ..+
T Consensus 820 ------------------~~dap-------k~~a~~~ikcl~-nv~~~iliAgcsaeS---TVKl~DaRsce~~-~E~kV 869 (1034)
T KOG4190|consen 820 ------------------MEDAP-------KEGAGGNIKCLE-NVDRHILIAGCSAES---TVKLFDARSCEWT-CELKV 869 (1034)
T ss_pred ------------------hhcCc-------ccCCCceeEecc-cCcchheeeeccchh---hheeeecccccce-eeEEe
Confidence 01111 111223333332 1123344444 4444 9999998876654 333
Q ss_pred ----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE-EECC
Q 005235 537 ----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW-FDMD 610 (707)
Q Consensus 537 ----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v-wDl~ 610 (707)
..++.+.+++..+.|+.++++- .|+|.+.|.++|+.+.....-......++ .|....|+....|..+.+ |..-
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 3356789999999999999986 89999999999988876654333333333 356677887778888887 7654
Q ss_pred CCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 611 ~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
.+ ....+.+....+.. -...-|+-|+++.....+.||- |.........+..++...-. +..++++--|-.
T Consensus 949 dg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYa-----d~a~~ha~stitKiR~d~f~--G~lTala~LPLN 1018 (1034)
T KOG4190|consen 949 DG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYA-----DSAELHAESTITKIRPDEFP--GTLTALAPLPLN 1018 (1034)
T ss_pred CC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEe-----cchhhhhhhhhccccccccC--Cccceeeecccc
Confidence 44 22222222111111 1122467788877767777773 22111111112222222111 116778888877
Q ss_pred CEEEEEeCCCcEEEE
Q 005235 691 PWLFTAGADSVIRLY 705 (707)
Q Consensus 691 ~~L~s~g~Dg~IrlW 705 (707)
.-++.|+..|.|++.
T Consensus 1019 ~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIALL 1033 (1034)
T ss_pred chhhccCCCCceeec
Confidence 777888888988874
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=3.4e-06 Score=95.76 Aligned_cols=183 Identities=12% Similarity=0.095 Sum_probs=132.4
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE 582 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~ 582 (707)
++..++.|+... .+..+|+.+.+.. ... -..+.|.-+ ..+++++++|. .|+|.+-|+.+.+.++++.+|.+.
T Consensus 146 ~~~~~i~Gg~Q~---~li~~Dl~~~~e~-r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQE---KLIHIDLNTEKET-RTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhh---heeeeecccceee-eeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccc
Confidence 445666666544 7888899888765 444 222234433 44678888887 799999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235 583 VSSIAIHPAGDNLIVGSR---------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHG 652 (707)
Q Consensus 583 I~sl~~spdg~~L~sGs~---------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~ 652 (707)
|+.++++ |+.|++++. |..|.|||+++. +.+..+.-+.++ .-+.|+|... .+|.+|..|...+-|.
T Consensus 220 iSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 220 ISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred eeeeecc--CCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence 9888775 889998876 456799999875 444444444443 5578999876 7888999999999864
Q ss_pred ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 653 ~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
... .++. .....-|. .+.++..+++++.+..|+.|..+|.|.+|.
T Consensus 296 ~~l----sNP~---~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATL----SNPP---AGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccc----CCCc---cceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 322 2222 22222222 223499999999999999999999999994
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00018 Score=74.72 Aligned_cols=231 Identities=16% Similarity=0.116 Sum_probs=145.6
Q ss_pred CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 418 EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
.....++.+|... ..++.+. +....+||+.++.... .++. ..-..+.+|
T Consensus 5 ~RgH~~a~~p~~~-~avafaRRPG~~~~v~D~~~g~~~~-----------------------~~~a---~~gRHFyGH-- 55 (305)
T PF07433_consen 5 ARGHGVAAHPTRP-EAVAFARRPGTFALVFDCRTGQLLQ-----------------------RLWA---PPGRHFYGH-- 55 (305)
T ss_pred ccccceeeCCCCC-eEEEEEeCCCcEEEEEEcCCCceee-----------------------EEcC---CCCCEEecC--
Confidence 3456788999653 4554443 3467788877663211 1110 111123444
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC------------
Q 005235 496 MVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK------------ 560 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg------------ 560 (707)
.+||++|++|++.-.|- ..+.|-|||....-.....| .+.-....+.+.|+++.|+++..|
T Consensus 56 ----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 56 ----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred ----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 57999999999886543 35699999999333222667 555567788999999888887422
Q ss_pred -------eEEEEECCCCeEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCc-------EEEEECCCCCcceEEee--
Q 005235 561 -------NIRVYDLLKQRLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGK-------LCWFDMDLSSKPYRVLK-- 620 (707)
Q Consensus 561 -------~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~-------I~vwDl~~~~~~~~~l~-- 620 (707)
++...|..+|+++.+..- |...|..|+++++|..++..-+.|. |.+++... .+..+.
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p 208 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAP 208 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCC
Confidence 356667778887776332 6667999999999987776655442 44444432 222222
Q ss_pred -----cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 621 -----CHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 621 -----~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
.-...|-+|++++++.+++..| .-+.+.+||. .++.+ +....-.. +..++-.+++ +++
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~------~tg~~---~~~~~l~D------~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA------ATGRL---LGSVPLPD------ACGVAPTDDG-FLV 272 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC------CCCCE---eeccccCc------eeeeeecCCc-eEE
Confidence 2346789999999998776555 6678999954 44433 22221111 6667777766 777
Q ss_pred EEeCCC
Q 005235 695 TAGADS 700 (707)
Q Consensus 695 s~g~Dg 700 (707)
|.|...
T Consensus 273 ssG~G~ 278 (305)
T PF07433_consen 273 SSGQGQ 278 (305)
T ss_pred eCCCcc
Confidence 766544
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=8.4e-07 Score=95.14 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=112.1
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeC--CCCEEEEE-e-CCeEE
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVS-T-KKNIR 563 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~-s-dg~I~ 563 (707)
...|..+|.++.|-.+-++++++. | .|.+||.-.++...... ...+.+..+..-+ +.++++++ + ..+|+
T Consensus 780 Y~aHkk~i~~igfL~~lr~i~ScD--~---giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVK 854 (1034)
T KOG4190|consen 780 YQAHKKPIHDIGFLADLRSIASCD--G---GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVK 854 (1034)
T ss_pred hhhccCcccceeeeeccceeeecc--C---cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhe
Confidence 568999999999999988888754 4 89999976665541122 2233333333333 34455554 4 79999
Q ss_pred EEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE
Q 005235 564 VYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 564 iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll 638 (707)
++|.+.+.-+..++ +....+.++++.+.|+.+++|-.+|.|.+.|.+++ +.+..++.-......++ .|..+.|
T Consensus 855 l~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L 932 (1034)
T KOG4190|consen 855 LFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQAL 932 (1034)
T ss_pred eeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHH
Confidence 99999886555544 23355899999999999999999999999999988 66666665444444443 3566778
Q ss_pred EEEeCCCcEEE-Eecc
Q 005235 639 ASCSDDCTAYV-FHGM 653 (707)
Q Consensus 639 aSgs~Dg~I~V-wd~~ 653 (707)
+....|.++.| |+..
T Consensus 933 ~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHAL 948 (1034)
T ss_pred HhhcccceeEeeehhc
Confidence 88888889988 9754
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=3.3e-06 Score=93.25 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=150.6
Q ss_pred ccccCCCCcEEEEecCCcc----------------ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 468 TAPDDNMASIVSWLQHDKL----------------DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~----------------~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
++.++.+|.+++..+.+.. ...+.+|...|.-++|+.+.+.|.+...+| .|.+|-+-++..
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G---lIiVWmlykgsW 105 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG---LIIVWMLYKGSW 105 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc---eEEEEeeecccH
Confidence 5677788888887664211 022668999999999999988898888877 999999988876
Q ss_pred eeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235 532 HRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607 (707)
Q Consensus 532 ~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw 607 (707)
....+ ..++.|.+++|..+|..++... ||.|.+=.+...+.. +.+++ .....+.|++|...++.+-..|.+.++
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hly 183 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLY 183 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEe
Confidence 52223 5677899999999999998887 898888777654433 22322 234578899999999999999999999
Q ss_pred ECCCCC------cc-e---EEeecCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235 608 DMDLSS------KP-Y---RVLKCHPKDITNVAFH--------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669 (707)
Q Consensus 608 Dl~~~~------~~-~---~~l~~h~~~I~~vafs--------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~ 669 (707)
|....- .+ + ..+......|..+.|. |+.+.||.|-..|.++|.. -...+. |+-.
T Consensus 184 dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR------~eND~~--Pvv~ 255 (1189)
T KOG2041|consen 184 DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR------SENDPE--PVVV 255 (1189)
T ss_pred cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh------hcCCCC--CeEE
Confidence 986321 01 0 0111111224455553 5788999999999999873 222222 3333
Q ss_pred eeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
-.|.. |.++.|+++|..|+.+|.|
T Consensus 256 dtgm~------~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 256 DTGMK------IVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ecccE------eecceecCCCcEEEEccCc
Confidence 33322 8899999999999999875
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=8.4e-07 Score=90.81 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=121.5
Q ss_pred EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235 412 RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL 491 (707)
Q Consensus 412 ~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~ 491 (707)
..++....-.| +|+-+-....++++.+..|.+-++.++-.. ..
T Consensus 207 ~SlQi~~a~~C-awSlni~gyhfs~G~sqqv~L~nvetg~~q------------------------------------sf 249 (425)
T KOG2695|consen 207 CSLQIPKAWSC-AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ------------------------------------SF 249 (425)
T ss_pred eeecCCcchhh-hhhhccceeeecccccceeEEEEeeccccc------------------------------------cc
Confidence 34444333333 676543224466777778888887765221 11
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----ceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEE
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----LSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVY 565 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iw 565 (707)
...+.|.++.|+..++.+..|+++| .|...|++.+ ......+-|...|+++..-. ++++|++++ +|+|.+|
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRng---eI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNG---EIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCC---cEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 3467788889998899999999988 9999999875 11114457888899888766 677777777 9999999
Q ss_pred ECCCCeE---EEEEeCCCCCeEE--EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 566 DLLKQRL---IKKLETGLKEVSS--IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 566 Dl~~~~~---~~~l~~~~~~I~s--l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
|++.-++ +.++.+|.+.-.- +.+++....+++++.|...+||.++.+ .++.++..
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf 386 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPF 386 (425)
T ss_pred eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-ceeeccCC
Confidence 9997666 8889888654332 344667788999999999999999977 66666653
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=8.9e-07 Score=90.61 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=104.0
Q ss_pred EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-----eEEEEEeCCCCCeEEEEEcC-CC
Q 005235 520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-----RLIKKLETGLKEVSSIAIHP-AG 592 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-----~~~~~l~~~~~~I~sl~~sp-dg 592 (707)
.|.+-++.++.. ..|..++.|.++.|+..+++++.|. .|.|..+||+.+ .+...+. |...|+|+..-. ++
T Consensus 235 qv~L~nvetg~~--qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~ 311 (425)
T KOG2695|consen 235 QVLLTNVETGHQ--QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQ 311 (425)
T ss_pred eeEEEEeecccc--cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhcccc
Confidence 899999998876 4667889999999999999999998 899999999864 3444453 668899987766 78
Q ss_pred CEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEE--EEcCCCCEEEEEeCCCcEEEEecc
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNV--AFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~v--afspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.+|++.+.+|+|.+||++.- ++ +.+..+|-..-.-+ ..++....++++++|+..+||.+.
T Consensus 312 q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred ceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 89999999999999999865 44 77788885433333 334566688899999999999554
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=0.00028 Score=71.70 Aligned_cols=210 Identities=18% Similarity=0.169 Sum_probs=129.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecC---CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccC
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG---EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD 472 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~---~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~ 472 (707)
++|+|..||..+|+.+...... ....+..+..++ .+++++.++.|..||..++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~d~~tG~--------------------- 57 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGG--RVYVASGDGNLYALDAKTGK--------------------- 57 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETT--EEEEEETTSEEEEEETTTSE---------------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCC--EEEEEcCCCEEEEEECCCCC---------------------
Confidence 4789999999999999988762 222322333444 67777899999999987763
Q ss_pred CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee-e-cc---CCCeEEEEE
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-KL---HGLPVSSVF 547 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~~---~~~V~~v~f 547 (707)
.+|.... ...+...- ...+..+++++.++ .|..+|..++... .. . .. .........
T Consensus 58 -----~~W~~~~---------~~~~~~~~-~~~~~~v~v~~~~~---~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 58 -----VLWRFDL---------PGPISGAP-VVDGGRVYVGTSDG---SLYALDAKTGKVL-WSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp -----EEEEEEC---------SSCGGSGE-EEETTEEEEEETTS---EEEEEETTTSCEE-EEEEE-SSCTCSTB--SEE
T ss_pred -----EEEEeec---------ccccccee-eeccccccccccee---eeEecccCCccee-eeeccccccccccccccCc
Confidence 2343221 11111101 12355666666666 8999999888877 44 2 11 111222233
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC----------e-EEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 548 HPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE----------V-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 548 spd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~----------I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
...+..++++. ++.|..+|+.+|+.+......... + ..+.+. ++ .+++++.++.+.-+|+.++...
T Consensus 119 ~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 119 AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE
T ss_pred eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE
Confidence 33377788877 899999999999998888764322 1 233333 44 7888888886444499988433
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
. ... ...+.. .....+..|+.++.++.|.+||.+
T Consensus 197 w-~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 197 W-SKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp E-EEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred E-Eec--CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence 2 222 222332 144667777777799999999543
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.33 E-value=9.9e-05 Score=76.69 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=129.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC--eEEEEEeCCCCEEEEEe------CCeEEEE
Q 005235 496 MVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL--PVSSVFHPTRSIFFVST------KKNIRVY 565 (707)
Q Consensus 496 ~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~--V~~v~fspd~~~l~v~s------dg~I~iw 565 (707)
....++.+| .+..++.+-.-| ....+||..++... ..+ ...+. .-..+|+++|.+|++.- .|.|-||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG--~~~~v~D~~~g~~~-~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG--TFALVFDCRTGQLL-QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC--cEEEEEEcCCCcee-eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 345678888 444555555544 58889999988876 555 22222 22568999999999863 4899999
Q ss_pred ECC-CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCCcceEE--e--ecC
Q 005235 566 DLL-KQRLIKKLETGLKEVSSIAIHPAGDNLIVGS------------------REGKLCWFDMDLSSKPYRV--L--KCH 622 (707)
Q Consensus 566 Dl~-~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs------------------~Dg~I~vwDl~~~~~~~~~--l--~~h 622 (707)
|.. +-+.+..+..+.-....|.+.|+|..|+++. ++-.|...|..++ ..+.. + ..|
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCcccc
Confidence 998 5577778887766677888999998888763 2345666666666 44544 4 347
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCc-------EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-E
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCT-------AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-F 694 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~-------I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~ 694 (707)
...|+.++++++|..++.+-..|- |-++.... .+.... .|-.....-... |-+|++++++.++ +
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~--~p~~~~~~l~~Y----~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLP--APEEQWRRLNGY----IGSIAADRDGRLIAV 233 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceecc--CChHHHHhhCCc----eEEEEEeCCCCEEEE
Confidence 788999999999887666544332 33332110 000000 000011111222 8899999999877 5
Q ss_pred EEeCCCcEEEEeC
Q 005235 695 TAGADSVIRLYCH 707 (707)
Q Consensus 695 s~g~Dg~IrlWdl 707 (707)
|+-.-|.+.+||.
T Consensus 234 tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 234 TSPRGGRVAVWDA 246 (305)
T ss_pred ECCCCCEEEEEEC
Confidence 5567889999973
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.0013 Score=72.91 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=105.7
Q ss_pred EEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEE----e-CC----eEEEEECCCCeEE----EEEeCCCCCeE
Q 005235 520 AIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVS----T-KK----NIRVYDLLKQRLI----KKLETGLKEVS 584 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~----s-dg----~I~iwDl~~~~~~----~~l~~~~~~I~ 584 (707)
.+.++.+...+.....+ .......++.|+-..+ .+.+- + +| .-++|++...++. ..+ .....|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcce
Confidence 56666666554432333 6666778888887443 33332 1 33 3567777654321 222 3446799
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc----CCCC
Q 005235 585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS----DLNQ 660 (707)
Q Consensus 585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~----Dl~~ 660 (707)
|++++|+.+.|+.|+.||.|.+||...+ +..+....-..+.++|||+|.+|++|+.-|.+.+||+.-.. -+..
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccc
Confidence 9999999999999999999999999755 33344445667899999999999999999999999864210 0111
Q ss_pred CCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
.....++-.+..|-.. ..++..+.|.+.
T Consensus 341 d~~P~~~L~Ls~yf~~-~~~L~~iqW~~~ 368 (545)
T PF11768_consen 341 DATPKSTLQLSKYFRV-SSSLVHIQWAPA 368 (545)
T ss_pred cCCCccEEeeehhccC-cchhheeEeccC
Confidence 2222223333333321 233778888854
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.31 E-value=9.5e-06 Score=82.03 Aligned_cols=201 Identities=15% Similarity=0.282 Sum_probs=131.7
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee----ee-cc------------CCCeEEEEEeCCC---
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI----PF-KL------------HGLPVSSVFHPTR--- 551 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~----~~-~~------------~~~V~~v~fspd~--- 551 (707)
.....|++|.|...|.||++|...| .|.++.-........ .| .| ...|..+.|..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgG---RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGG---RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cccceeeEEEeccccceEeecCCCc---eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 3456789999999999999998877 888887654331111 12 22 2357777776543
Q ss_pred CEEEEEeCCeEEEEECCCCe-------------------E------------------E-----EEE-eCCCCCeEEEEE
Q 005235 552 SIFFVSTKKNIRVYDLLKQR-------------------L------------------I-----KKL-ETGLKEVSSIAI 588 (707)
Q Consensus 552 ~~l~v~sdg~I~iwDl~~~~-------------------~------------------~-----~~l-~~~~~~I~sl~~ 588 (707)
.+|+++.|++|++|-+.... + + +.. ..|...|.++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 34555669999999874320 0 0 001 234455889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEE--eecCC-----CCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCC
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRV--LKCHP-----KDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQ 660 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~--l~~h~-----~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~ 660 (707)
..+...++++ .|=+|.+|+++-....+.. ++.|. .-|++..|||.. .+|...+..|.|++-|++ +
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR------q 253 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR------Q 253 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh------h
Confidence 9888888776 4678999998765443333 33443 358899999964 477777889999999554 3
Q ss_pred CCcccc-------------eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 661 NPLIVP-------------LEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 661 ~~~~~p-------------l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..+... +.-+.+-... |.++.|++.|++|++-+. -+|+|||+
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsS----ISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSS----ISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhh----hcceEEcCCCcEEEEecc-ceEEEEec
Confidence 222100 0111122223 899999999999988764 58999984
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.00017 Score=79.66 Aligned_cols=248 Identities=12% Similarity=0.045 Sum_probs=144.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc--------
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK-------- 459 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~-------- 459 (707)
...++.++.+|.|.-+|..||+.+......+.+.+--.-.++ .+++++.++.|..+|..++.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 356778889999999999999998887765444321111244 5777778889999998888653221111
Q ss_pred ---ceeeecccccccCCCCcEEEEecCCccceEEeccCC--------CeEEEEEcC--CCCEEEEEeCCCCccEEEEEEC
Q 005235 460 ---DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK--------MVSSVEWHR--RGDYLSTVMPAGESRAIFMHQL 526 (707)
Q Consensus 460 ---~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~--------~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl 526 (707)
.+... -.+..+..++.+...+..++...-...... ....+.-+| .+..+++++.++ .+...|+
T Consensus 198 ~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g---~l~ald~ 273 (394)
T PRK11138 198 ESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG---NLVALDL 273 (394)
T ss_pred CCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC---eEEEEEC
Confidence 11100 013344556666666665443321110000 000111112 245666777777 8999999
Q ss_pred CCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235 527 SKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 527 ~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.+++.. -..... ....+.. .+..+++++ ++.|..+|..+++.+...... .....+..+. +..|++++.+|.|
T Consensus 274 ~tG~~~-W~~~~~-~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l 347 (394)
T PRK11138 274 RSGQIV-WKREYG-SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYL 347 (394)
T ss_pred CCCCEE-EeecCC-CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEE
Confidence 888655 332111 1112222 344555555 899999999999876544321 1223333332 5688899999999
Q ss_pred EEEECCCCCcceEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDIT-NVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~-~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.++|..++ +.+.........+. +..+ .+..|+.++.||.|+.+
T Consensus 348 ~~ld~~tG-~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 348 HWINREDG-RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred EEEECCCC-CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 99999987 55555443323232 2222 24467788999998887
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.28 E-value=0.00022 Score=72.46 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCC--
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGL-- 580 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~-- 580 (707)
++.++++++.++ .|..+|..+++.. ..+...+.+...... .+..+++++ ++.|+.+|+.+|+.+.+. ....
T Consensus 35 ~~~~v~~~~~~~---~l~~~d~~tG~~~-W~~~~~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDG---NLYALDAKTGKVL-WRFDLPGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTS---EEEEEETTTSEEE-EEEECSSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCC---EEEEEECCCCCEE-EEeeccccccceeee-cccccccccceeeeEecccCCcceeeeeccccccc
Confidence 566777777766 9999999998876 555223322222222 344555555 889999999999998884 3221
Q ss_pred -CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC----------EEEEEEcCCCCEEEEEeCCCcEEE
Q 005235 581 -KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD----------ITNVAFHRSYPLFASCSDDCTAYV 649 (707)
Q Consensus 581 -~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~----------I~~vafspdg~llaSgs~Dg~I~V 649 (707)
.....+.....+..++++..++.|..+|+.++ +.+......... +.+-....++ .++.++.++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 11223333334889999999999999999988 555555543322 1222222344 6666667775444
Q ss_pred EecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 650 FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|.. ++.. + ....... +.. .....+..|+.++.++.|..||+
T Consensus 188 ~d~~------tg~~---~--w~~~~~~----~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 188 VDLA------TGEK---L--WSKPISG----IYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp EETT------TTEE---E--EEECSS-----ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred EECC------CCCE---E--EEecCCC----ccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 4443 3322 1 1111110 222 14567788888889999999985
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.27 E-value=9.8e-06 Score=80.28 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=103.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEcc----------CCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNP----------LPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~sp----------dg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
.||++..++.+......++.|...++. .++..+++.+. -+ ..++++..|+.+.+++.+.. ..+..
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~-~~~~~ 126 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKD-LALMS 126 (319)
T ss_pred eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEEEechHH-Hhhhh
Confidence 567777777777776666666544443 23334444321 11 25788888999999887652 11111
Q ss_pred cccceeeeccc--------cccc------CCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCE-EEEEeCCCCccE
Q 005235 457 RVKDLLHVETP--------TAPD------DNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDY-LSTVMPAGESRA 520 (707)
Q Consensus 457 ~~~~v~~~~~~--------~~~~------~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~-lat~s~dg~~~~ 520 (707)
.........++ +... ..-+....|++....... .......|.+++-||..+. +++|+.+| .
T Consensus 127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg---~ 203 (319)
T KOG4714|consen 127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG---I 203 (319)
T ss_pred hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCC---e
Confidence 11111100111 1111 122344455544322211 1222344999999996655 55556666 9
Q ss_pred EEEEECCCCceeeeee-ccCCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCC
Q 005235 521 IFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~ 569 (707)
+-+||++........+ .|+.++..+.|||. +..|++++ ||.+..||..+
T Consensus 204 ~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 204 VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999886552233 89999999999995 45688888 99999999864
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=2.7e-06 Score=60.53 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=35.7
Q ss_pred cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 665 ~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.++.++.+|... |.+|+|+|++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~----i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS----INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS----EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc----EEEEEEecccccceeeCCCCEEEEEC
Confidence 358899999998 99999999999999999999999997
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00032 Score=79.21 Aligned_cols=194 Identities=14% Similarity=0.041 Sum_probs=120.1
Q ss_pred EcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C----CeEEEEECCCCeEEEEE
Q 005235 502 WHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K----KNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 502 ~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d----g~I~iwDl~~~~~~~~l 576 (707)
++++|..+...+. ..+.+.+.|..+.... ..+...+....++++|++.++++++ + .++...+......+..+
T Consensus 200 lpnDGk~l~~~~e--y~~~vSvID~etmeV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 200 LPNDGKDLDDPKK--YRSLFTAVDAETMEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cCCCCCEeecccc--eeEEEEEEECccceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3456655433321 2347777788776554 4444444667889999999998875 1 33433333322222222
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC----CCcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL----SSKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFH 651 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~----~~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd 651 (707)
... .+ .++.++|++..++ +++|.+.|..+ +......+. -......|+++|||+++++++ .+.+|.|.|
T Consensus 277 ni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 277 NIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred chH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 111 00 1334578877763 67899999987 323444443 345678999999999776555 689999998
Q ss_pred cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+....++..+.+ .+-..+.+.-.. ++|-...+|.++|....|.-.|..|-.||+
T Consensus 350 v~k~k~~~~~~~-~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 350 VRKLDDLFDGKI-KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ChhhhhhhhccC-CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 775444333322 233333332221 455788999999998888899999999985
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.23 E-value=0.00015 Score=79.94 Aligned_cols=136 Identities=22% Similarity=0.253 Sum_probs=94.5
Q ss_pred cEEEEecCCccceE--EeccCCCeEEEEEcC-CCCEEEEEeC----CC-CccEEEEEECCCCceeeee---eccCCCeEE
Q 005235 476 SIVSWLQHDKLDGI--RLRHFKMVSSVEWHR-RGDYLSTVMP----AG-ESRAIFMHQLSKKLSHRIP---FKLHGLPVS 544 (707)
Q Consensus 476 ~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~lat~s~----dg-~~~~V~Iwdl~~~~~~~~~---~~~~~~V~~ 544 (707)
.+.++...+..... .........++.|+. +...+.++.. +| ..-...+|++...+.+... +...+.|.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 44555555443322 333455567888876 4445555432 22 1124567888776655322 278899999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
++++|+...|+.|+ ||.|.+||...+... +....-.++.++|||+|..+++|+..|.+.+||+..+.
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999988 999999998776332 22223457899999999999999999999999998753
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.23 E-value=4.2e-06 Score=59.50 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
++++.++.+|...|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999999999999999997
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00026 Score=80.75 Aligned_cols=217 Identities=13% Similarity=0.137 Sum_probs=137.1
Q ss_pred cccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCc-EEEEEEccCCCccEEEEEeCC-----eEEEEECCCCCchh
Q 005235 382 KPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEA-IQYVAWNPLPELPVLAVSVGQ-----DVLILNTGLGNEEE 454 (707)
Q Consensus 382 ~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~-V~~v~~spdg~~~lla~s~d~-----~V~lwd~~~~~~~~ 454 (707)
..+......++.|+.+|.|.+.+ .+-+.++.|+. ... |..+ |.-++...|++.+.|+ .|+||+++..+..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 34556667899999999888877 22334466665 333 4444 4444434677777654 47888876532110
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEE--CCCCcee
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ--LSKKLSH 532 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd--l~~~~~~ 532 (707)
. ..++ +..+++... ......++.+++.|.+-+.+|+|-.+| .|..+. +...+..
T Consensus 107 s---P~c~------------~~~ri~~~~------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG---~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 107 S---PQCL------------YEHRIFTIK------NPTNPSPASSLAVSEDLKTIVCGFTNG---LVICYKGDILRDRGS 162 (933)
T ss_pred C---ccee------------eeeeeeccC------CCCCCCcceEEEEEccccEEEEEecCc---EEEEEcCcchhcccc
Confidence 0 0000 001111100 112356789999999989999999888 777764 2222222
Q ss_pred eeee--ccCCCeEEEEEeCCCCE-EEEEeCCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 533 RIPF--KLHGLPVSSVFHPTRSI-FFVSTKKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 533 ~~~~--~~~~~V~~v~fspd~~~-l~v~sdg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
+..+ ..+.+|+.++|..++.. +++++...|.+|.+.... ..+.+..+...+.|.++++....+++++. ..|.+||
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD 241 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence 1333 77889999999988877 788888999999998544 25557777788999999876664655543 4699999
Q ss_pred CCCCCcceEEee-cCCCCE
Q 005235 609 MDLSSKPYRVLK-CHPKDI 626 (707)
Q Consensus 609 l~~~~~~~~~l~-~h~~~I 626 (707)
.+.. .+-..+. +|...+
T Consensus 242 sd~~-~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 242 SDGR-GPCFAFEVGEKKEM 259 (933)
T ss_pred CCCc-ceeeeecCCCeEEE
Confidence 8754 4444454 665433
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.11 E-value=0.0006 Score=69.12 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=111.5
Q ss_pred CCCCCCCCCc-ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCcEEEEEEccCC-----CccEEEEEe
Q 005235 373 PKLPSRKDLK-PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--------GEAIQYVAWNPLP-----ELPVLAVSV 438 (707)
Q Consensus 373 p~lp~~~~l~-pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--------~~~V~~v~~spdg-----~~~lla~s~ 438 (707)
|+-|.|+--+ .|+.++.+|+.+...|+|+++|+.. ..+..+.. ..+|..|.|.+-. ...|++...
T Consensus 39 pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 39 PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 4444443322 3678888999999999999999864 44434433 4566677675532 124666666
Q ss_pred CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235 439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES 518 (707)
Q Consensus 439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~ 518 (707)
.|.++-|-+..+. +.+-...+.. .....+...|.++.++|..+.|++|+.....
T Consensus 118 ~G~L~Sy~vs~gt---------------------~q~y~e~hsf-----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 118 RGQLRSYLVSVGT---------------------NQGYQENHSF-----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ 171 (282)
T ss_pred cceeeeEEEEccc---------------------CCcceeeEEE-----EecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence 6665555432210 0111111100 0122457789999999999988877754311
Q ss_pred --------cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235 519 --------RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590 (707)
Q Consensus 519 --------~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp 590 (707)
..+..|.+-.+... ......-+...-.+. .+-.+|.+-+.+...........|..|.+||
T Consensus 172 ~~~s~a~~~GLtaWRiL~~~Py----------yk~v~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 172 DGMSKASSCGLTAWRILSDSPY----------YKQVTSSEDDITASS--KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CccccccccCceEEEEcCCCCc----------EEEccccCccccccc--cccceeeccceeeeeccccCCCceEEEEECC
Confidence 01222222211110 000000000000000 1122333333222222223456799999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 591 AGDNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
||..||+...+|.|.+|++-.- ++...+
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL-~~~~~W 267 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSL-RLQRSW 267 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcc-hhhccc
Confidence 9999999999999999999754 444433
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=4.8e-05 Score=85.91 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=107.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL 572 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~ 572 (707)
...++|++++ +.+|+.|..+| .|++++..... . ..|.|... .-+|.++++|+ ||+|.|..+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g---~v~~~~~~~~~-~-~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRG---AVYLTTCQGNP-K-TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccc---eEEEEecCCcc-c-cccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4556777775 67899999988 99999887654 2 34433222 56799999999 89999999998887
Q ss_pred EEEEeCCCCCeEEEEEcCC-----CCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 573 IKKLETGLKEVSSIAIHPA-----GDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 573 ~~~l~~~~~~I~sl~~spd-----g~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
..++.-+ .++.+++++|+ .+.+++|+..| +.++.-.--+ +--..+....++|.++.|. |.++|-++++|
T Consensus 106 ~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence 7777655 78999999998 47899999988 7776543211 1112455667899999995 78999998888
Q ss_pred EEEEecc
Q 005235 647 AYVFHGM 653 (707)
Q Consensus 647 I~Vwd~~ 653 (707)
|+|||..
T Consensus 181 v~vyd~~ 187 (846)
T KOG2066|consen 181 VKVYDTP 187 (846)
T ss_pred cEEEecc
Confidence 8999654
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=5.9e-05 Score=86.02 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=132.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
...++-|+-...+...|+.+++..+.... .+.|.-|+.+ + +.+++|...|+|.+-|+.+....
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~i------------- 210 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETI------------- 210 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCcee-------------
Confidence 35677777778888999998888777766 3346555544 3 36888889999999998765321
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------CccEEEEEECCCCceeeeeeccCC
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------ESRAIFMHQLSKKLSHRIPFKLHG 540 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------~~~~V~Iwdl~~~~~~~~~~~~~~ 540 (707)
..+..|++.|..+.. .|+.|++++..+ -+.-|+|||++.-+.. .|+....
T Consensus 211 ---------------------ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~ 266 (1118)
T KOG1275|consen 211 ---------------------HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPY 266 (1118)
T ss_pred ---------------------eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhcc-CCccccc
Confidence 135578888887665 588999998765 2457899999998877 7774444
Q ss_pred CeEEEEEeCCC-CEEEEEe-CCeEEEEE---CCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 541 LPVSSVFHPTR-SIFFVST-KKNIRVYD---LLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 541 ~V~~v~fspd~-~~l~v~s-dg~I~iwD---l~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
..+-+.|+|.- ..+++++ .|...+.| +... .-++.+......+.++++|++|+.++.|..+|.|.+|-
T Consensus 267 ~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 267 GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44778899964 3455665 79999999 3333 22333334445599999999999999999999999997
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00015 Score=80.19 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=106.6
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCc-cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--C--CeEE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGES-RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--K--KNIR 563 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~-~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--d--g~I~ 563 (707)
.+..-...+..-+|++++..++..+..... ..+.++++.++... ..+...+.-...+|+|+|+.|+.+. + -.|.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 344455667778999999987777554433 47999999988765 4445566666789999999988776 4 4578
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-Cc--EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GK--LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~--I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
++|+..+.. ..+....+.-+.-.|+|+|+.|+..|.. |+ |.+++++.+. ...+......-..-.|+|+|.+|+.
T Consensus 266 ~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCCCEEEE
Confidence 888887764 3466555555577899999998877653 43 6666766543 2344433333337889999998887
Q ss_pred EeCC-Cc
Q 005235 641 CSDD-CT 646 (707)
Q Consensus 641 gs~D-g~ 646 (707)
.+.. |.
T Consensus 343 ~~~~~g~ 349 (425)
T COG0823 343 ESSSGGQ 349 (425)
T ss_pred EeccCCc
Confidence 7743 44
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.0009 Score=75.74 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=108.7
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC-ccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE-SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~-~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l 554 (707)
.+...|..+......+.-.+....++++++|+++++.+.+.. ..++..-+....... ..|...+ ..++.++|++.
T Consensus 216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~-vvfni~~---iea~vkdGK~~ 291 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV-VVFNIAR---IEEAVKAGKFK 291 (635)
T ss_pred EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE-EEEchHH---HHHhhhCCCEE
Confidence 334444444333333333446677899999999988874431 124444443332222 2231111 01344578877
Q ss_pred EEEeCCeEEEEECCC-----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCc-----------ceE
Q 005235 555 FVSTKKNIRVYDLLK-----QRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSK-----------PYR 617 (707)
Q Consensus 555 ~v~sdg~I~iwDl~~-----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~-----------~~~ 617 (707)
.+ .++.|.+.|..+ .+.+..+..+ .....|+++|||+++++++ .+..|.|+|+.+... ...
T Consensus 292 ~V-~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 292 TI-GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred EE-CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 76 468899999998 4566666655 5678999999999887665 488999999986422 122
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
...-- ..-...+|.++|..+.|..-|..|..|++.
T Consensus 370 evevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 370 EPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred eeccC-CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 22221 223467899999999999999999999765
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.08 E-value=0.0015 Score=71.05 Aligned_cols=268 Identities=16% Similarity=0.242 Sum_probs=142.5
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccc-cceeeecccccccC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRV-KDLLHVETPTAPDD 472 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~-~~v~~~~~~~~~~~ 472 (707)
+..+.+.|+|+.+++..........+....|||+| ..++-..++.|.+++..++... +.... ..+.. +.+
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g--~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~n-G~~----- 91 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG--KYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYN-GVP----- 91 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS--TEEEEEETTEEEEESSTTSEEEESES--TTTEEE-SB------
T ss_pred ccceeEEEEecCCCceEECcCCccccccceeecCC--CeeEEEecCceEEEECCCCCeEEeccccceeEEc-Ccc-----
Confidence 44567999999998766444446788999999999 5777888899999987665321 11000 00000 000
Q ss_pred CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------------------------------Ccc
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---------------------------------ESR 519 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---------------------------------~~~ 519 (707)
+ |-. ...--+.-..+-|||+|++||....|. ..-
T Consensus 92 -d-----wvy-------eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 92 -D-----WVY-------EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp -------HHH-------HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred -c-----eec-------cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 0 000 000001112344455554444433221 122
Q ss_pred EEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEE-e---C--CeEEEEECCCCeEEEEE-eCCCCCe---E
Q 005235 520 AIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVS-T---K--KNIRVYDLLKQRLIKKL-ETGLKEV---S 584 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~-s---d--g~I~iwDl~~~~~~~~l-~~~~~~I---~ 584 (707)
.+.|+++.+++...... ....-+..+.|.+++..|++. . + ..+.++|+.++.+...+ .....+| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 56677887776531221 334567889999999844443 2 2 35777788776432222 2233454 2
Q ss_pred EEEEc-CCCC-EEEEEECCCc--EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCE-EEEEeCC--CcEEEEeccccc
Q 005235 585 SIAIH-PAGD-NLIVGSREGK--LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPL-FASCSDD--CTAYVFHGMVYS 656 (707)
Q Consensus 585 sl~~s-pdg~-~L~sGs~Dg~--I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~l-laSgs~D--g~I~Vwd~~~~~ 656 (707)
.+.+. +++. +|.....+|. |.+++... ...+.+....-.|+. +.|++++.. +++|..+ +.-+||-+.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~--- 313 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS--- 313 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE---
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE---
Confidence 45554 5554 4555556676 45555543 445567666667755 677887764 4455543 456666442
Q ss_pred CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
+.... .+..|...... -..+.|||++++++-.
T Consensus 314 -~~~~~---~~~~LT~~~~~----~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 314 -LDSGG---EPKCLTCEDGD----HYSASFSPDGKYYVDT 345 (353)
T ss_dssp -TTETT---EEEESSTTSST----TEEEEE-TTSSEEEEE
T ss_pred -eCCCC---CeEeccCCCCC----ceEEEECCCCCEEEEE
Confidence 22111 24556555443 2589999999987543
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0011 Score=73.72 Aligned_cols=220 Identities=14% Similarity=0.140 Sum_probs=119.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.-.+..|.++|+| .+++++.+|...|+..... .....+.
T Consensus 32 ~~~p~~ls~npng--r~v~V~g~geY~iyt~~~~---------------------------------------r~k~~G~ 70 (443)
T PF04053_consen 32 EIYPQSLSHNPNG--RFVLVCGDGEYEIYTALAW---------------------------------------RNKAFGS 70 (443)
T ss_dssp SS--SEEEE-TTS--SEEEEEETTEEEEEETTTT---------------------------------------EEEEEEE
T ss_pred CcCCeeEEECCCC--CEEEEEcCCEEEEEEccCC---------------------------------------cccccCc
Confidence 4557899999999 6777899998888772211 1122345
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l 576 (707)
....+|++++. +|+..... .|.|+.--+.... ..+.....+..+-. |.+|++.+++.|.+||+.+++.+..+
T Consensus 71 g~~~vw~~~n~-yAv~~~~~---~I~I~kn~~~~~~-k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i 142 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSS---TIKIYKNFKNEVV-KSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI 142 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS----EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE
T ss_pred eeEEEEecCcc-EEEEECCC---eEEEEEcCccccc-eEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE
Confidence 56788998554 66666555 8999633222221 23322223444333 88899888889999999999999999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----------CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS----------SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~----------~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
... .|..+.|+++|.+++..+.+ .+.|++.... ...+..+.--...|.+.+|.-+ .|+-.+.. .
T Consensus 143 ~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~ 216 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H 216 (443)
T ss_dssp SS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E
T ss_pred ecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e
Confidence 754 48999999999999999865 6777776532 0134444433567888888765 44444333 4
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+-+- .+. ...+..+. .+ +.=+...|....|+....|+.|..+.|
T Consensus 217 lkYl~--------~Ge-~~~i~~ld---~~----~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 217 LKYLV--------NGE-TGIIAHLD---KP----LYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEE--------TTE-EEEEEE-S---S------EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred EEEEE--------cCC-cceEEEcC---Cc----eEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 54431 011 01122222 22 566667777788888888888877653
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0004 Score=78.68 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=66.8
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
-..|+|-||- .+|++-+...-.-.+++++|+|.. .+++.+ .-|.+.+|...+.+.
T Consensus 38 er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~--------------------- 93 (1416)
T KOG3617|consen 38 ERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTET--------------------- 93 (1416)
T ss_pred CCCceEEEEe-cCCCCCcccccceehhhhccChHH--HHHhhccccceeEEEecCCcee---------------------
Confidence 3567888885 677755444444456789999997 455555 446677776543211
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
......|..+|..+.||++|..++++..-| .|.+|...
T Consensus 94 -------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d 131 (1416)
T KOG3617|consen 94 -------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD 131 (1416)
T ss_pred -------------eeeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence 123457999999999999999999999877 99999876
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=6.3e-05 Score=79.75 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=152.5
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEE---EEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCch-----
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLR---VLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEE----- 453 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~---~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~----- 453 (707)
|++-..++.++|.||.++.|--..-.-+. .+.. .+.|.+++.+-++ ..+.+++. |..++++|+...+..
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccc
Confidence 55666799999999999999854312222 2222 6778888999998 33444355 789999998765331
Q ss_pred --hcccccceeeeccc----ccccCCCCcEEEEecCCccce--E-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235 454 --EQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKLDG--I-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 454 --~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~--~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw 524 (707)
+.+...-+.+-+.. .+....++.+.+++....... . ..-|..+|.++.+++.++.+++....| .|.-|
T Consensus 95 ~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g---mVEyW 171 (558)
T KOG0882|consen 95 VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG---MVEYW 171 (558)
T ss_pred ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc---eeEee
Confidence 11111111111100 223345677788876644322 2 346899999999999999999988777 99999
Q ss_pred ECCC------Ccee--------eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC----------
Q 005235 525 QLSK------KLSH--------RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---------- 578 (707)
Q Consensus 525 dl~~------~~~~--------~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---------- 578 (707)
.... .... ...| +.++...++.|+|++..+..-+ |..||++++.+|++++.+..
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 8873 1000 0122 5567889999999999998877 99999999999876554321
Q ss_pred ----------------------C-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 579 ----------------------G-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 579 ----------------------~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
+ ...-+.+.|...|++|+-|+.=| |+|+++.++ .+.+.+
T Consensus 252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~ 313 (558)
T KOG0882|consen 252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRIL 313 (558)
T ss_pred cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEe
Confidence 0 11124456778899999988765 888998876 445444
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.98 E-value=0.00035 Score=82.36 Aligned_cols=197 Identities=12% Similarity=0.146 Sum_probs=127.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC----
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL---- 567 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl---- 567 (707)
...|.++.|..+++.++.+...| .|.+.|..+.... .. .....|.+++|+||...++..+ ++++.+-.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G---~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALG---DIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCC---cEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 36899999999999999999888 8888887776543 23 6678899999999999999888 466554321
Q ss_pred CCC-------------------eEEEEEeCCC---------------------CCeEEEEEcCCCCEEEEE-----ECCC
Q 005235 568 LKQ-------------------RLIKKLETGL---------------------KEVSSIAIHPAGDNLIVG-----SREG 602 (707)
Q Consensus 568 ~~~-------------------~~~~~l~~~~---------------------~~I~sl~~spdg~~L~sG-----s~Dg 602 (707)
-.- +....|.+.. ..=++|.|--||.++|+. ..-+
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 000 1111222111 112458899999999983 3337
Q ss_pred cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
.|+|||-+ + .+-.+-..-.+--.+++|-|.|.++|+-. .|+.|.+|.-. -+..+.. .-.+.-....
T Consensus 223 kirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN---GL~hg~f---~l~~p~de~~--- 291 (1265)
T KOG1920|consen 223 KIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN---GLRHGEF---VLPFPLDEKE--- 291 (1265)
T ss_pred eEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC---Ccccccc---ccCCcccccc---
Confidence 89999987 2 21111111223345799999999998754 45679888321 1212211 1111112222
Q ss_pred CeeEEEEcCCCCEEEE---EeCCCcEEEEeC
Q 005235 680 GVMDCKFHPRQPWLFT---AGADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~~L~s---~g~Dg~IrlWdl 707 (707)
|..++|+.++..|+. ......|++|.+
T Consensus 292 -ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 292 -VEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred -hheeeecCCCCceeeeecccccceEEEEEe
Confidence 899999999999987 555556999963
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00037 Score=77.18 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEE--EEECCCCCchhcccccceeeecccccccCCCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVL--ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~--lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
..+.++++.+|+....+...+.-...+|+|||...+++...++... ++|+....
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~------------------------ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN------------------------ 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc------------------------
Confidence 4699999999988877777777778899999965555566666544 44443321
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~ 555 (707)
...+..-.+.-..-.|+|+|++++.++..++...|.+.++........++...+.. ...++|+|.+|+
T Consensus 274 -----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~ 341 (425)
T COG0823 274 -----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIV 341 (425)
T ss_pred -----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEE
Confidence 11111222223356899999999999887767788888988887653344322222 788999999998
Q ss_pred EEe--CCe--EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 005235 556 VST--KKN--IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 556 v~s--dg~--I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D 601 (707)
..+ +|. |.++|+.++..+..+. .......-++.|+|..++..+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 876 454 7777777665444443 33445667888888887765543
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=5.5e-06 Score=93.51 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=133.1
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
....+|++|+-+. ..|++++..|.|+++++.+|... ....+|.+.
T Consensus 1101 ~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e----------------------------------~s~ncH~Sa 1145 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSME----------------------------------ESVNCHQSA 1145 (1516)
T ss_pred ccceeeEEeecCC-ceEEeeeccceEEEEEccCcccc----------------------------------ccccccccc
Confidence 6788999999988 47889999999999998877332 124479999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~ 575 (707)
|+.+.=+.+|..+++.+.-. .--..+|++..-......| ..-.++.|+....+-++|+ .....|||++++..+.+
T Consensus 1146 vT~vePs~dgs~~Ltsss~S-~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1146 VTLVEPSVDGSTQLTSSSSS-SPLSALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccccccCCcceeeeecccc-CchHHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 99999999999888776543 2256789986532221333 2345788988766666676 57789999999877666
Q ss_pred EeCC----CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 576 LETG----LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 576 l~~~----~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
+... ...-++..|+|+..+++ .|| .+||++.. ..++.|...+..+ .=.|||.|.-++.-+ -|||
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD 1289 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWD 1289 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhh
Confidence 4322 12247789999987776 344 58999876 5555555443222 336999999888776 4896
Q ss_pred ccccc
Q 005235 652 GMVYS 656 (707)
Q Consensus 652 ~~~~~ 656 (707)
++++.
T Consensus 1290 ~RTF~ 1294 (1516)
T KOG1832|consen 1290 MRTFK 1294 (1516)
T ss_pred hHHHH
Confidence 66554
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=5e-06 Score=91.36 Aligned_cols=204 Identities=15% Similarity=0.217 Sum_probs=132.4
Q ss_pred CCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 417 GEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
...+.|+++.-+.+..|+++ ..+|.|.+-.+...... ......++..
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------s~E~tp~~ar 103 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------SAEVTPGYAR 103 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------cceecccccc
Confidence 34567777766654345544 46677777665432110 0113457788
Q ss_pred CeEEEEEcC-CCCEEEEEeCCC-CccEEEEEECCCCceee---eee-c-cCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 496 MVSSVEWHR-RGDYLSTVMPAG-ESRAIFMHQLSKKLSHR---IPF-K-LHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 496 ~V~~v~~sp-~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~---~~~-~-~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
.+++++|++ |.+.||.|-... .+..+.|||+.+.-... ..| . ......+++|..+.+++.+|. .+.+.++|+
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence 899999988 556677663211 34589999998773311 122 2 344566889988888888877 789999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEE-CCCCCcceEEeecCCC----CEEEEEEcCCCC-EEEE
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFD-MDLSSKPYRVLKCHPK----DITNVAFHRSYP-LFAS 640 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwD-l~~~~~~~~~l~~h~~----~I~~vafspdg~-llaS 640 (707)
+.. +..........+..+.++| .++++++-+ ||.|.+|| ...-..++..+..... .+..++|+|..+ ++++
T Consensus 184 Rqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~ 261 (783)
T KOG1008|consen 184 RQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV 261 (783)
T ss_pred hhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence 833 2222222345677788999 777777665 99999999 4444455554443332 489999999655 6777
Q ss_pred EeCC-CcEEEEeccc
Q 005235 641 CSDD-CTAYVFHGMV 654 (707)
Q Consensus 641 gs~D-g~I~Vwd~~~ 654 (707)
++.| ++|+++++.+
T Consensus 262 l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 262 LSRDSITIRLYDICV 276 (783)
T ss_pred hccCcceEEEecccc
Confidence 7755 6899998764
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00071 Score=71.15 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=137.1
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
++...|....++..++.+.+|+|.|+.+..++..+.....+++++|.-+....|+++-..|.|.|||+...+..+.....
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence 33334444558889999999999999999999999999999999999998778888889999999998775432211111
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE------EEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV------EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v------~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
++ ...+|..+ ...+.|..++.... .+..|.+.......
T Consensus 278 ~~-------------------------------t~~pv~~i~~~~~n~~f~~gglLv~~lt-----~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 278 NV-------------------------------TINPVHKIAPVQPNKIFTSGGLLVFALT-----VLQFYEIVFSAECL 321 (463)
T ss_pred hh-------------------------------ccCcceeecccCccccccccceEEeeeh-----hhhhhhhhccccCC
Confidence 00 01111111 23344556665554 45667665433221
Q ss_pred ---eeeccCCCeEEEEEeCCCCEEEEEe--C------CeEEE-EECCCCeEEEEEeC-C-CCC---e---EEEEEcCCCC
Q 005235 534 ---IPFKLHGLPVSSVFHPTRSIFFVST--K------KNIRV-YDLLKQRLIKKLET-G-LKE---V---SSIAIHPAGD 593 (707)
Q Consensus 534 ---~~~~~~~~V~~v~fspd~~~l~v~s--d------g~I~i-wDl~~~~~~~~l~~-~-~~~---I---~sl~~spdg~ 593 (707)
.++...+.+.+++.++-.+.+++.. + +.|-. -|-.+|..+..-.. + ... + ..+.-.++.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 2225566777788887666655543 1 11111 12223333322111 1 000 0 1111133444
Q ss_pred EEE-EEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CC-CEEEEEeCCCcEEEE
Q 005235 594 NLI-VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SY-PLFASCSDDCTAYVF 650 (707)
Q Consensus 594 ~L~-sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg-~llaSgs~Dg~I~Vw 650 (707)
+|+ +|...+.+.+||..+. ..++++.. ..+|..++... ++ .+|+.-. |..++||
T Consensus 402 ~iv~~gd~tn~lil~D~~s~-evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSF-EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred EEEEecCCcceeEEeccchh-heeeeccc-CcceeecceeecCCcchhhhee-cceEEEE
Confidence 443 4555678999999877 66777764 47788777644 23 3666654 5568887
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00016 Score=76.84 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=136.6
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYD 566 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD 566 (707)
-|...|+.+..+ ..+++.+++.|| .++.|--..-... ...| .|.+.+.+++.+-++-++.+.+ |..++++|
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDG---h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDG---HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee-hhheEEeeecch---hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 467777766543 568999999999 9999976542221 1233 6778888999999998888854 79999999
Q ss_pred CCCCeEEEEEeC--CCCCeEEEEEcCCC--CEEEEE-ECCCcEEEEECCCCCcc-eEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 567 LLKQRLIKKLET--GLKEVSSIAIHPAG--DNLIVG-SREGKLCWFDMDLSSKP-YRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 567 l~~~~~~~~l~~--~~~~I~sl~~spdg--~~L~sG-s~Dg~I~vwDl~~~~~~-~~~l~~h~~~I~~vafspdg~llaS 640 (707)
+..-..+.-+.. -.+.+.. ..+|.. ..|+++ -.++.+.|+|-.....+ ...-.-|..+|..+.+++.+..++|
T Consensus 83 vEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred eeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 887544422221 1122222 222221 244444 34688999998765433 3334568999999999999999999
Q ss_pred EeCCCcEEEEeccc-ccCCCCCCc-----ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 641 CSDDCTAYVFHGMV-YSDLNQNPL-----IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 641 gs~Dg~I~Vwd~~~-~~Dl~~~~~-----~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
....|.|.-|...- +.-..++-. ..-+..+...... ..++.|+|++..+.+-+.|..||++.+
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~----pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE----PTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccC----ccceEEccccCcccccCcccEEEEEEe
Confidence 99999999996641 110011000 0011112222233 788999999999999999999999863
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00052 Score=77.85 Aligned_cols=144 Identities=12% Similarity=0.175 Sum_probs=104.5
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccC----CCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235 385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL----PELPVLAVSVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spd----g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
...+.+++|||.||+|.|-.+-+++...++....++.+|+++|+ ...+++++|..| +.++.-.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~------------ 146 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN------------ 146 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh------------
Confidence 46788999999999999999999999999999999999999998 223677777777 6655411
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH 539 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~ 539 (707)
|- .......+....++|.++.|. |+++|-++.+| |+|+|..+++.. ..+ ...
T Consensus 147 -------------------wl-gnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G----v~vyd~~~~~~l-~~i~~p~ 199 (846)
T KOG2066|consen 147 -------------------WL-GNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG----VKVYDTPTRQRL-TNIPPPS 199 (846)
T ss_pred -------------------hh-cCccceeeecCccceEEEEec--CcEEEEecCCC----cEEEecccccee-eccCCCC
Confidence 10 000011234567899999996 88999999876 999999988776 444 222
Q ss_pred CC------eEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 005235 540 GL------PVSSVFHPTRSIFFVSTKKNIRVYDLLK 569 (707)
Q Consensus 540 ~~------V~~v~fspd~~~l~v~sdg~I~iwDl~~ 569 (707)
.. ...+.|.++ ..|+.|-..+|+|..++.
T Consensus 200 ~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence 32 334566654 456777777888888873
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0024 Score=73.10 Aligned_cols=155 Identities=10% Similarity=0.114 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCC-cc-EEEEEECCCCce----ee----eeec-----cCCCeEEEEEeCCCCEEEEEe-CC
Q 005235 497 VSSVEWHRRGDYLSTVMPAGE-SR-AIFMHQLSKKLS----HR----IPFK-----LHGLPVSSVFHPTRSIFFVST-KK 560 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~-~~-~V~Iwdl~~~~~----~~----~~~~-----~~~~V~~v~fspd~~~l~v~s-dg 560 (707)
|..+-...+..+|++.+.|+. +. .|+||++++... +. +.+. ...++.+++.|.+-..+++|- +|
T Consensus 68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG 147 (933)
T KOG2114|consen 68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG 147 (933)
T ss_pred hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence 333333334478899888874 33 799999975421 10 1111 346788999999988888887 89
Q ss_pred eEEEEECC--C--CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235 561 NIRVYDLL--K--QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 561 ~I~iwDl~--~--~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ 636 (707)
.|..+.-. . +....-...+..+|+.+++..++..++....-..|.+|.+....-..+++..|...++|.+|++.-.
T Consensus 148 ~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 148 LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence 99998522 1 2222223345578999999988877444444457999999843212555888889999999998776
Q ss_pred EEEEEeCCCcEEEEec
Q 005235 637 LFASCSDDCTAYVFHG 652 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd~ 652 (707)
.|++|+. ..|.+|+.
T Consensus 228 qfIca~~-e~l~fY~s 242 (933)
T KOG2114|consen 228 QFICAGS-EFLYFYDS 242 (933)
T ss_pred cEEEecC-ceEEEEcC
Confidence 5555543 45888854
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.036 Score=55.64 Aligned_cols=293 Identities=14% Similarity=0.062 Sum_probs=145.7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-cce--e
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDL--L 462 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v--~ 462 (707)
+...+++.||..+.+.--|..+|.....-.....|.+-+.--.. .++.++..+.+++.+..+|+....... +.+ .
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 33568999999999999999999988665556666555544333 588899999999999999854211110 000 0
Q ss_pred -eeccc---ccccCCCCcEEEEecCCccceEEeccCCCe-EEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235 463 -HVETP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMV-SSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 463 -~~~~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V-~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
.+.+. +..++.|++....|..+..........+.+ .+-+..+ ++. |..+...| .|.--....... ..|
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G---~vlavt~~~~~~--~~~ 172 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAG---AVLAVTKNPYSS--TEF 172 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccc---eEEEEccCCCCc--cee
Confidence 11111 455666777666665544332222222222 1223333 333 22233333 333333332221 222
Q ss_pred ---ccCCCeEEE-EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEE-EEE-cCCCCEEEEEECCCcEEEEEC
Q 005235 537 ---KLHGLPVSS-VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSS-IAI-HPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 537 ---~~~~~V~~v-~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~s-l~~-spdg~~L~sGs~Dg~I~vwDl 609 (707)
...+++.+- .+ -++.+..++ ||.+.-++ ..|+.+..+... ++|.. -+- +|.-+.|..+..+..+..-.+
T Consensus 173 w~~~~~~PiF~splc--v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~-GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~ 248 (354)
T KOG4649|consen 173 WAATRFGPIFASPLC--VGSSVIITTVDGVLTSFD-ESGRQVWRPATK-GPIFMEPCESRPSCQQISLENENCFCAPLPI 248 (354)
T ss_pred hhhhcCCccccCcee--ccceEEEEEeccEEEEEc-CCCcEEEeecCC-CceecccccCCCcceEEEEecCCeEEEeccc
Confidence 112232211 00 133444455 88888888 567777765443 34321 112 255556666655544333222
Q ss_pred CCCCcceEEeecCCCCEEEEEEcC-----------C-CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFHR-----------S-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN 677 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafsp-----------d-g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~ 677 (707)
. + .++-. ...+....+..+| . .++|..++.||.+.|.-.+ +. +.....|.+.
T Consensus 249 ~-g-hL~w~--~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--------~s---l~~~~s~~g~- 312 (354)
T KOG4649|consen 249 A-G-HLLWA--TQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS--------KS---LAEISSNGGE- 312 (354)
T ss_pred c-c-eEEEE--ecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEec--------cc---ccccccCCCc-
Confidence 2 1 11111 1111122222222 1 2467788899988877332 11 2222223222
Q ss_pred CCCeeEEE-----Ec-C---CCCEEEEEeCCCcEEEEeC
Q 005235 678 GRGVMDCK-----FH-P---RQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 678 ~~gV~~l~-----fs-p---dg~~L~s~g~Dg~IrlWdl 707 (707)
-+.+..+. |+ | +| .|+.|+.|..|+-|||
T Consensus 313 lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl 350 (354)
T KOG4649|consen 313 LQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDL 350 (354)
T ss_pred cceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEec
Confidence 00022222 21 2 33 5788889999999986
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.77 E-value=0.0064 Score=65.16 Aligned_cols=189 Identities=15% Similarity=0.203 Sum_probs=115.4
Q ss_pred CCEEEEEeCC--C----Cc-cEEEEEECCCC-----ceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235 506 GDYLSTVMPA--G----ES-RAIFMHQLSKK-----LSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR 571 (707)
Q Consensus 506 g~~lat~s~d--g----~~-~~V~Iwdl~~~-----~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~ 571 (707)
-.+|++|..- + .. +.|.++++... +.. ... ...++|++++-- +..|+++.++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~-~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK-LIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE-EEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEE-EEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcc
Confidence 4567766531 0 12 68999999884 222 222 668899998876 445888889999999998877
Q ss_pred -EEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 572 -LIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 572 -~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
+...-.. ....+.++... +++|++|..-..|.++..+.....+..+. .....++++.|-+++..++.+..+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 5544332 22356666665 67999999999998886654323233332 234568899998777799999999999
Q ss_pred EEEecccccC-CCCCC-cccceEEeeCCCCCCCCCeeEE---EEcCC--C------CEEEEEeCCCcEEE
Q 005235 648 YVFHGMVYSD-LNQNP-LIVPLEILRGHTSSNGRGVMDC---KFHPR--Q------PWLFTAGADSVIRL 704 (707)
Q Consensus 648 ~Vwd~~~~~D-l~~~~-~~~pl~~l~gh~~~~~~gV~~l---~fspd--g------~~L~s~g~Dg~Irl 704 (707)
.++....... ...+. ...++..+.-+.. |+++ .+.|. + +.++.++.+|.|.+
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~-----v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDI-----VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS------EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCc-----cceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9997642111 11122 3333333333322 7776 54552 2 25888889998873
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=4.6e-05 Score=86.32 Aligned_cols=152 Identities=10% Similarity=0.036 Sum_probs=115.7
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe---CCeEEEE
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST---KKNIRVY 565 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s---dg~I~iw 565 (707)
+..|....+|++|+.+.++|++|+..| .|+++++.++... ... .|.+.|+-+.-+-+|..+++++ .--..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~G---eik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAG---EIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccc---eEEEEEccCcccc-ccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 456788899999999999999999988 9999999999887 666 9999999999999998877755 3467899
Q ss_pred ECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEE
Q 005235 566 DLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 566 Dl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSg 641 (707)
++.. +...+++... .++.|+.....-+.|+......+||+.++..+..-|.+- ...=+.+.|+|+..++.
T Consensus 1173 ~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred ccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 9864 4555666533 578888776666778777789999999985433323321 22236788999988776
Q ss_pred eCCCcEEEEeccc
Q 005235 642 SDDCTAYVFHGMV 654 (707)
Q Consensus 642 s~Dg~I~Vwd~~~ 654 (707)
.|| .+||++.
T Consensus 1247 -ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRI 1256 (1516)
T ss_pred -eCc--eeeeecc
Confidence 455 4787653
No 335
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.026 Score=59.85 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEeC--------
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVSTK-------- 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~sd-------- 559 (707)
.+.+.++..-..+..|+++.. .+.+++...+... ..+ ......+.+...|+|.+.+....
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~-t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~ 138 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACEH-----GVRLLDPDTGGKI-TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE 138 (307)
T ss_pred CCCcccceeecCCCeEEEEcc-----ccEEEeccCCcee-EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence 344455554445555555554 4667776555442 222 12245667888999987765222
Q ss_pred ----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCC-----CC-cceEEeecCCCCEEE
Q 005235 560 ----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDL-----SS-KPYRVLKCHPKDITN 628 (707)
Q Consensus 560 ----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~-----~~-~~~~~l~~h~~~I~~ 628 (707)
|.|+.+|. .+..++.+..+-..-+.|+|||||+.|..... .+.|.-|+++. .. .....+....+.--.
T Consensus 139 ~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG 217 (307)
T COG3386 139 ERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG 217 (307)
T ss_pred cCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence 44555554 45556555554555688999999987777654 47788887762 11 112222223455556
Q ss_pred EEEcCCCCEEEEEeCCC-cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235 629 VAFHRSYPLFASCSDDC-TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA 698 (707)
Q Consensus 629 vafspdg~llaSgs~Dg-~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~ 698 (707)
++...+|.+.+++-..| .|.+|+ .. +.+ +..+.-.... +++++|- |+.+.|+..++
T Consensus 218 ~~vDadG~lw~~a~~~g~~v~~~~------pd-G~l---~~~i~lP~~~----~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 218 MAVDADGNLWVAAVWGGGRVVRFN------PD-GKL---LGEIKLPVKR----PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred eEEeCCCCEEEecccCCceEEEEC------CC-CcE---EEEEECCCCC----CccceEeCCCcCEEEEEec
Confidence 77777888776555554 888883 22 332 5555555444 8888884 45566654443
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.57 E-value=0.023 Score=61.20 Aligned_cols=264 Identities=12% Similarity=0.071 Sum_probs=126.6
Q ss_pred cCCCC-cEEEEEeCCCc--EEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccc
Q 005235 384 YPVAC-YLEYKGSTDGT--VRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRV 458 (707)
Q Consensus 384 fp~~~-~~l~sgs~Dgt--VrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~ 458 (707)
|..++ .+|+.+..||. +.+-|+.+++..+--.+. .......++|+. ..++-...+..|.-.|+.+.+.. +....
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 44444 56777766765 555578888876655542 223356677877 35666666778888888886541 11111
Q ss_pred cceee-eccc-----------------------------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE
Q 005235 459 KDLLH-VETP-----------------------------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY 508 (707)
Q Consensus 459 ~~v~~-~~~~-----------------------------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~ 508 (707)
..... ..+. +..+.....|..-++.++....+..-...+..+.|+|....
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 11110 0000 11112223344445555555555566677888999997766
Q ss_pred EEEEeCCCCccE--EEEEECCCCceeeeee-ccC-C-CeEEEEEeCCCCEEEE-Ee-----CCeEEEEECCCCeEEEEEe
Q 005235 509 LSTVMPAGESRA--IFMHQLSKKLSHRIPF-KLH-G-LPVSSVFHPTRSIFFV-ST-----KKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 509 lat~s~dg~~~~--V~Iwdl~~~~~~~~~~-~~~-~-~V~~v~fspd~~~l~v-~s-----dg~I~iwDl~~~~~~~~l~ 577 (707)
+++-|..|.-.. -+||-+.+......++ .+. + .+..=-|.|+|..|.. +. +..|.-+|+.+++......
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~ 281 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME 281 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe
Confidence 666665553222 2677776554443455 222 2 2333458999987665 22 3468888998875543222
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC----------------cEEEEECCCCCcceEEeecCCC-----------CEEEEE
Q 005235 578 TGLKEVSSIAIHPAGDNLIVGSREG----------------KLCWFDMDLSSKPYRVLKCHPK-----------DITNVA 630 (707)
Q Consensus 578 ~~~~~I~sl~~spdg~~L~sGs~Dg----------------~I~vwDl~~~~~~~~~l~~h~~-----------~I~~va 630 (707)
. .+...+-.+++|++++-=+.|. -|+++++..+ . ...+..|.. .=-.+.
T Consensus 282 ~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~-~-~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 282 M--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG-R-FRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp E---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-E-EEEEEE-------BTTBSSTT----E
T ss_pred C--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-c-eeeeeeccCcceeecCCCccCCCCCc
Confidence 2 2455677789998887544432 4667888754 2 222322321 124679
Q ss_pred EcCCCCEEE-EEeCCCcEEEEec
Q 005235 631 FHRSYPLFA-SCSDDCTAYVFHG 652 (707)
Q Consensus 631 fspdg~lla-Sgs~Dg~I~Vwd~ 652 (707)
|+||+++++ ++...|...||=+
T Consensus 358 FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCCCCEEEEECCCCCCccEEEE
Confidence 999999554 5557888888843
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00028 Score=79.90 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=92.1
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
...+..+-..|||..++|++++ .|.|.||- .+|++-....-. -.+++++|||..-.|+.|-.-|.+.+|...+
T Consensus 13 Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 13 DSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred cccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCC
Confidence 3444445568999999999986 48899984 566654333222 2367899999998999999999999999876
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL 658 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl 658 (707)
. ..-.....|..+|..+.||++|..|+++..-|.|.+|..++.+.+
T Consensus 91 ~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 91 T-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred c-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 5 333445579999999999999999999999999999987654433
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.53 E-value=3.2e-05 Score=85.17 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=127.9
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCC-CCEEEEEe-----CCeEE
Q 005235 494 FKMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT-RSIFFVST-----KKNIR 563 (707)
Q Consensus 494 ~~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd-~~~l~v~s-----dg~I~ 563 (707)
...+.|+++.-+. ..+++|..+| .|.+-.+....-....+ ++...+++++|++- ..+|++|- |-.+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG---~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATG---NISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccC---ceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 4567788776544 3677777777 77777765433221333 77788999999984 55666663 46799
Q ss_pred EEECCCC--eEE--EEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCE
Q 005235 564 VYDLLKQ--RLI--KKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPL 637 (707)
Q Consensus 564 iwDl~~~--~~~--~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~l 637 (707)
|||+.++ .+. ..|.+ -.....+++|-.+.++|++|...+.+.++|++... .....-.+..+..+...| .+.+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCc
Confidence 9999875 111 12222 22335688888888999999999999999998432 222222345677788888 6778
Q ss_pred EEEEeCCCcEEEEec-ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeC-CCcEEEEeC
Q 005235 638 FASCSDDCTAYVFHG-MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGA-DSVIRLYCH 707 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~-~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~-Dg~IrlWdl 707 (707)
+++-+ ||.|.+||. +.. .+ |+..+.......-..+..++|+|..+ .|++... .++|+++++
T Consensus 211 ~cs~~-dg~iAiwD~~rni----en----pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNI----EN----PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred eeccc-cCceeeccchhhh----cc----HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 87776 999999962 211 12 22222222211111389999999765 3455554 467888874
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0073 Score=67.98 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=98.4
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEe-c-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLE-I-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~-~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~ 457 (707)
.+..+..+..+++.|+.-|.|.+|+-.+|.....-. + .+.+..+..+++. ..+++++..|.|.++.+....+..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~--- 112 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRD--- 112 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCc---
Confidence 344566777899999999999999977665443222 1 5566677788887 355566677788887765532110
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce---eee
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS---HRI 534 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~---~~~ 534 (707)
. .... ..-..|...|++++|++++..|.+|...| .|....++.... ...
T Consensus 113 --~-----------------~~~t------~~d~~~~~rVTal~Ws~~~~k~ysGD~~G---kv~~~~L~s~~~~~~~~q 164 (726)
T KOG3621|consen 113 --L-----------------DYVT------PCDKSHKCRVTALEWSKNGMKLYSGDSQG---KVVLTELDSRQAFLSKSQ 164 (726)
T ss_pred --c-----------------eeec------cccccCCceEEEEEecccccEEeecCCCc---eEEEEEechhhhhccccc
Confidence 0 0000 00124788999999999999999999888 999888887311 002
Q ss_pred ee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 005235 535 PF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK 569 (707)
Q Consensus 535 ~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~ 569 (707)
++ ...+.|..+... ..+|++++--...++++..
T Consensus 165 ~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE~ 198 (726)
T KOG3621|consen 165 EILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTEA 198 (726)
T ss_pred eeeccCcceEEeecc--cceehHhhhhhhheeecch
Confidence 22 445566555544 3456666533334555543
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.15 Score=53.09 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=134.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
.+..++.|..+| |.++++........+.....|..+...|+- .++.+-.|+.+.++++........... ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~--~~llvLsd~~l~~~~L~~l~~~~~~~~-~~----- 76 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL--NLLLVLSDGQLYVYDLDSLEPVSTSAP-LA----- 76 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc--CEEEEEcCCccEEEEchhhcccccccc-cc-----
Confidence 346888899999 999998433333333333449999999987 355555679999999876433211000 00
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEE---EcCCCCEEEEEeCCCCccEEEEEECCCC-----ceeeeeecc
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVE---WHRRGDYLSTVMPAGESRAIFMHQLSKK-----LSHRIPFKL 538 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~---~sp~g~~lat~s~dg~~~~V~Iwdl~~~-----~~~~~~~~~ 538 (707)
................+...+ -...+.+|+++.. . .|.||.+... ... ..+..
T Consensus 77 --------------~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k---~i~i~~~~~~~~~f~~~~-ke~~l 137 (275)
T PF00780_consen 77 --------------FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-K---KILIYEWNDPRNSFSKLL-KEISL 137 (275)
T ss_pred --------------ccccccccccccccCCeeEEeeccccccceEEEEEEC-C---EEEEEEEECCccccccee-EEEEc
Confidence 000000000112222333333 1223344554443 2 8888887663 222 55566
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC------------CCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235 539 HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG------------LKEVSSIAIHPAGDNLIVGSREGKLCW 606 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~------------~~~I~sl~~spdg~~L~sGs~Dg~I~v 606 (707)
...+.+++|. +..|++|..+...+.|+.++.....+... ..++..+.+. ++.+|++ .+..-.+
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~f 212 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVF 212 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEE
Confidence 7889999999 66888888888999999977554333211 1234444443 4566664 3444444
Q ss_pred EECCCCCcce--EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235 607 FDMDLSSKPY--RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT 674 (707)
Q Consensus 607 wDl~~~~~~~--~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~ 674 (707)
.|.. | .+. ..+.- .....++++ ..++|+..+.+ .|.||+ +.++.+ ++++.+..
T Consensus 213 v~~~-G-~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~-~iEV~~------~~~~~l---vQ~i~~~~ 267 (275)
T PF00780_consen 213 VNKN-G-EPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSN-SIEVRS------LETGEL---VQTIPLPN 267 (275)
T ss_pred EcCC-C-CcCcccEEEc-CCchhEEEE--ECCEEEEECCC-EEEEEE------CcCCcE---EEEEECCC
Confidence 4553 3 222 23332 235566776 45677776664 499994 444444 55555443
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.50 E-value=0.017 Score=62.15 Aligned_cols=289 Identities=13% Similarity=0.133 Sum_probs=124.1
Q ss_pred eCCCCeEEEEEecCCc-E-----EEEEEccCCCccEEEEEeCC--eEEEEECCCCCch-hccc-cc----ceeeeccc-c
Q 005235 404 EVESGRCLRVLEIGEA-I-----QYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEE-EQRR-VK----DLLHVETP-T 468 (707)
Q Consensus 404 d~~tg~~l~~l~~~~~-V-----~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~-~~~~-~~----~v~~~~~~-~ 468 (707)
|..||..+..+..... . +.=+|.++|...|+++..++ .+.+.|+.++... +... .. .+++..-. +
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 5567777666655222 1 12357889965555555555 5667777766431 1110 01 11110000 1
Q ss_pred cccCCCCcEEEEecCCccceE-EeccCCCeEEEEEc--CCCCEEEEEeCCC-------------------CccEEEEEEC
Q 005235 469 APDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWH--RRGDYLSTVMPAG-------------------ESRAIFMHQL 526 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~s--p~g~~lat~s~dg-------------------~~~~V~Iwdl 526 (707)
.-......+...++.+.+... ..-....+-...|. .++..++..-... ....|..-|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 111122344445555555433 22334444445664 3555554432111 2346777788
Q ss_pred CCCceeeeeeccCCCeEEEEEeCCCCEEEE-EeC----C-eEEEEECCC-CeEEEEEeCCC--CCeEEEEEcCCCCEEEE
Q 005235 527 SKKLSHRIPFKLHGLPVSSVFHPTRSIFFV-STK----K-NIRVYDLLK-QRLIKKLETGL--KEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 527 ~~~~~~~~~~~~~~~V~~v~fspd~~~l~v-~sd----g-~I~iwDl~~-~~~~~~l~~~~--~~I~sl~~spdg~~L~s 597 (707)
.+++.. ..+.....+..+.|+|..+.+++ |.. . .-|||-+.+ +...+.+..+. ..+..=-|.|+|..|.-
T Consensus 176 ~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 887764 44577888999999998776665 432 2 236676554 33344443332 22445578999987765
Q ss_pred EEC-----CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEeccccc
Q 005235 598 GSR-----EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----------------TAYVFHGMVYS 656 (707)
Q Consensus 598 Gs~-----Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----------------~I~Vwd~~~~~ 656 (707)
-+. +..|.-+|+.++.. .... ...+...+--+++|.+||-=+.|. .|+|+++.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~-~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~--- 328 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGER-RRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE--- 328 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--E-EEEE--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT---
T ss_pred EeecCCCCceEEEeeCCCCCCc-eEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc---
Confidence 332 44577778887632 2212 222445666688999987544432 34445332
Q ss_pred CCCCCCcccc------eEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEE
Q 005235 657 DLNQNPLIVP------LEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLY 705 (707)
Q Consensus 657 Dl~~~~~~~p------l~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlW 705 (707)
....... ...+.++... -=-.+.|+|||++| +++...|...||
T Consensus 329 ---~~~~~~l~~h~~sw~v~~~~~q~---~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 329 ---AGRFRKLARHDTSWKVLDGDRQV---THPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---TTEEEEEEE-------BTTBSST---T----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ---cCceeeeeeccCcceeecCCCcc---CCCCCccCCCCCEEEEECCCCCCccEE
Confidence 2211000 0112222211 01457899999987 556677777666
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.50 E-value=0.095 Score=59.66 Aligned_cols=254 Identities=11% Similarity=0.045 Sum_probs=139.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCc--------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEA--------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~--------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
..+|.++.++.|.-.|..+|+.+..+..... + ..++...++ .+++++.++.|.-+|..++...-.....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR--KVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC--eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 4678888899999999999999887765222 0 011122213 6888888999999999988654322211
Q ss_pred c-------eeee-cc--c-cccc---------CCCCcEEEEecCCccceEEecc--C-------------------CCe-
Q 005235 460 D-------LLHV-ET--P-TAPD---------DNMASIVSWLQHDKLDGIRLRH--F-------------------KMV- 497 (707)
Q Consensus 460 ~-------v~~~-~~--~-~~~~---------~~d~~i~iW~~~~~~~~~~~~h--~-------------------~~V- 497 (707)
. +.+. .. . +..+ ..++.+..++..++...-.... . ..|
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 0000 00 0 2222 2346667677665544321111 0 001
Q ss_pred EEEEEcCCCCEEEEEeCCC---------------CccEEEEEECCCCceeeeee--ccC-C----CeEEEEEe----CCC
Q 005235 498 SSVEWHRRGDYLSTVMPAG---------------ESRAIFMHQLSKKLSHRIPF--KLH-G----LPVSSVFH----PTR 551 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg---------------~~~~V~Iwdl~~~~~~~~~~--~~~-~----~V~~v~fs----pd~ 551 (707)
...++.+.+..++.++.++ ..+.|.-.|+.+++.. -.+ ... . ......+. -++
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~-W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK-WFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE-EEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 1234444566676666443 1236888888888776 444 111 0 11111111 123
Q ss_pred C---EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE------------------ECCCcEEEEEC
Q 005235 552 S---IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG------------------SREGKLCWFDM 609 (707)
Q Consensus 552 ~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG------------------s~Dg~I~vwDl 609 (707)
. .+++++ +|.+..+|..+|+.+...... ...++.+| ..++++ ..+|.|.-+|+
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 2 466666 899999999999988776532 11234444 333332 24577888888
Q ss_pred CCCCcceEEeecC--C------CCE--EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 610 DLSSKPYRVLKCH--P------KDI--TNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 610 ~~~~~~~~~l~~h--~------~~I--~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.++....+ .... . .+. ..++ -.+.+|+.++.||.|+.+|..
T Consensus 374 ~tG~~~W~-~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 374 KTGKVVWE-KREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred CCCcEeeE-eeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECC
Confidence 88743322 2211 0 111 1122 245678888899999999554
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.02 Score=63.00 Aligned_cols=264 Identities=11% Similarity=0.075 Sum_probs=126.7
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc-ccccCCCCcE-EEEecCC-----ccc--eE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP-TAPDDNMASI-VSWLQHD-----KLD--GI 489 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~-~~~~~~d~~i-~iW~~~~-----~~~--~~ 489 (707)
.|++|.|+++. ..++++...|.|.||.+......-......-....+. +......+.+ -+-++.. +.. ..
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999986 4788999999999998755422110000000000000 0000001111 1111111 111 11
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee-ee-c------cCCCeEEEEEeC-----CC---CE
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PF-K------LHGLPVSSVFHP-----TR---SI 553 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~-~------~~~~V~~v~fsp-----d~---~~ 553 (707)
+....++|++++.| +=.++|.|..+| .+.|.|++....... .+ . ....|+++.|.- |+ ..
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G---~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESG---SLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTS---EEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCC---cEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 33457899999987 555899999888 999999977665421 11 2 234677888862 22 57
Q ss_pred EEEEe-CCeEEEEECCC---Ce----EEEEEeCCCCCeEEEE-EcCC-----------------C---CEEEEEECCCcE
Q 005235 554 FFVST-KKNIRVYDLLK---QR----LIKKLETGLKEVSSIA-IHPA-----------------G---DNLIVGSREGKL 604 (707)
Q Consensus 554 l~v~s-dg~I~iwDl~~---~~----~~~~l~~~~~~I~sl~-~spd-----------------g---~~L~sGs~Dg~I 604 (707)
+++|+ .|.+.+|.+.- +. .......+.+.|..|. |+.+ | ..+++...+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 88888 69999998751 21 2222223445554443 3211 1 124444456789
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEEEc-----CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVAFH-----RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~vafs-----pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
+++.+.+.....+.+ .......++.+- ..+..|++-..+|.|++|.+- .-. ++..+.-....+..
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP------~Lk---ei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP------SLK---EIKSVSLPPPLDSR 307 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT------T-----EEEEEE-SS---HH
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC------Cch---HhhcccCCCccccc
Confidence 999998764444444 222233444552 356688888999999999432 222 23444333221222
Q ss_pred CeeEEEEcCCCCEEEEEe
Q 005235 680 GVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g 697 (707)
.+...+++++|..++-.|
T Consensus 308 ~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp HHTT-EE-TTS-EEEE-S
T ss_pred cccccEECCCCCEEEEeC
Confidence 356677888888766554
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.11 Score=57.69 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=100.5
Q ss_pred cEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235 399 TVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI 477 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i 477 (707)
.|+||+. .|+.+.++.- .+.|.++.|+.+. .|++...+|.++++|+.... .
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~------------------------ 113 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-Q------------------------ 113 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-e------------------------
Confidence 4889984 5777777665 5899999999977 69999999999999975321 0
Q ss_pred EEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE-ECCCCcee----eeee---cc--CCCeEE-EE
Q 005235 478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH-QLSKKLSH----RIPF---KL--HGLPVS-SV 546 (707)
Q Consensus 478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw-dl~~~~~~----~~~~---~~--~~~V~~-v~ 546 (707)
+.+... .....-....+.+..+..+|-.+++ .++ .+.+. +....... ..+. .. ...+.. ..
T Consensus 114 --fsl~~~-i~~~~v~e~~i~~~~~~~~GivvLt--~~~---~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 114 --FSLGEE-IEEEKVLECRIFAIWFYKNGIVVLT--GNN---RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred --echhhh-ccccCcccccccccccCCCCEEEEC--CCC---eEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 000000 0000001111222222223422222 222 22222 22211000 0000 00 001111 23
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-CC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-PK 624 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-~~ 624 (707)
++.+....+... ++.+.+.+-.... .+. ..+++..|++||+|++||.-..+|.+.+...+.. +.+..+... ..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCC
Confidence 444444433333 5556644432211 122 2367999999999999999999999999987765 445444433 23
Q ss_pred CEEEEEEcCC
Q 005235 625 DITNVAFHRS 634 (707)
Q Consensus 625 ~I~~vafspd 634 (707)
....+.|.-+
T Consensus 261 ~p~~~~WCG~ 270 (410)
T PF04841_consen 261 PPKQMAWCGN 270 (410)
T ss_pred CCcEEEEECC
Confidence 4455555443
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.12 Score=56.77 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=153.6
Q ss_pred EEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc--ceeeeccc------cccc
Q 005235 400 VRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK--DLLHVETP------TAPD 471 (707)
Q Consensus 400 VrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~--~v~~~~~~------~~~~ 471 (707)
+.+++..+.+....+........+...+++....++-.....+...+............. .-..+... .+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence 677777777666666666677888888888533444434444555444311110000000 00000000 2233
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT 550 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd 550 (707)
.....+.+.+...........-......+++++++..+.++......+.+.+.|-.+.... ... ....+ ..+++.|+
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~-~~~~vG~~P-~~~a~~p~ 170 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT-ATIPVGNTP-TGVAVDPD 170 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE-EEEecCCCc-ceEEECCC
Confidence 3456777777554444333333337788999999988877766322458999998888776 444 22233 89999999
Q ss_pred CCEEEEEe--CCeEEEEECCCCeEEE-E----EeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEE-e
Q 005235 551 RSIFFVST--KKNIRVYDLLKQRLIK-K----LETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRV-L 619 (707)
Q Consensus 551 ~~~l~v~s--dg~I~iwDl~~~~~~~-~----l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~-l 619 (707)
+..++++. ++.|.+.|........ . +..+ .....+.++|+|.++.+.... +.+...|..++ ..... +
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~ 248 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDL 248 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEecc
Confidence 99888877 7999999987765553 1 2112 334678999999977665443 58999998876 32322 1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q 005235 620 KCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGM 653 (707)
Q Consensus 620 ~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~ 653 (707)
..-...-..++++|+|..+.+.. ..+.+.+-|.+
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 21111456789999999887774 44788888554
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.46 E-value=0.0032 Score=70.07 Aligned_cols=182 Identities=15% Similarity=0.229 Sum_probs=94.2
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR 571 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~ 571 (707)
.....+..++++|+|+++++++ +| ...|+.....+. ...+....++|.+.+.+.+.-..++|.|+.--+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~g---eY~iyt~~~~r~-----k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DG---EYEIYTALAWRN-----KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TT---EEEEEETTTTEE-----EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CC---EEEEEEccCCcc-----cccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3445578999999999998855 45 778887433322 22345567899996554443447889997433333
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
..+++... ..+..|-. |..|++.+.+ .|.+||+.++ +.+..+.. .+|..|.|+++|.++|..+.+ ++.|++
T Consensus 101 ~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 101 VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETG-KLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHc-ceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 33344433 22444432 7777777655 8999999987 77777763 248999999999999999866 577775
Q ss_pred cccc--cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 652 GMVY--SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 652 ~~~~--~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
...- ...........+..+.--... |.+.+|..+ -+|+|.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~----IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISER----IKSGCWVED-CFIYTT 213 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S------SEEEEETT-EEEEE-
T ss_pred ecchhcccccccCchhceEEEEEecce----eEEEEEEcC-EEEEEc
Confidence 3211 000011111123333331233 889999876 344443
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.061 Score=57.62 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=121.4
Q ss_pred CcEEEEeCCCCeEEEEEec--CCcEEEEEE---ccCC---CccEEEEEe---------C-CeEEEEECCCCCchhccccc
Q 005235 398 GTVRIWEVESGRCLRVLEI--GEAIQYVAW---NPLP---ELPVLAVSV---------G-QDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~--~~~V~~v~~---spdg---~~~lla~s~---------d-~~V~lwd~~~~~~~~~~~~~ 459 (707)
..|+|.|..+.+.+.++.. .+.+.+++. ..+. ...+++|+. . |.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-------
Confidence 3589999988888887777 566666554 3221 223444432 1 4455555433100
Q ss_pred ceeeecccccccCCCCcEEEEecCCccce--EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc-eeeeee
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDG--IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL-SHRIPF 536 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~--~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~ 536 (707)
.+ .... ......++|++++-- +|. |+++.. + .|.+|++.... .....+
T Consensus 75 -------------~~----------~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~---~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 75 -------------NN----------FKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-N---KLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp --------------------------EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-T---EEEEEEEETTSSEEEEEE
T ss_pred -------------cc----------eEEEEEEEEeecCcceEhhhh-CCE-EEEeec-C---EEEEEEccCcccchhhhe
Confidence 00 0111 133567889998866 444 444442 2 99999998888 442333
Q ss_pred -ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 537 -KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 -~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
.....+.++... +.++++|. ...|.++.... ...+..+. ....+++++.|-++++.++++..+|.|.++....
T Consensus 126 ~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 126 YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 445566666655 56888888 67777764432 22222222 2346689998887778999999999999998763
Q ss_pred C-------C-cceEEeecC-CCCEEEE---EEcCC--C------CEEEEEeCCCcEEEE
Q 005235 612 S-------S-KPYRVLKCH-PKDITNV---AFHRS--Y------PLFASCSDDCTAYVF 650 (707)
Q Consensus 612 ~-------~-~~~~~l~~h-~~~I~~v---afspd--g------~llaSgs~Dg~I~Vw 650 (707)
. . +.......| ...|+++ ++.|. + +.++.++.+|.|.+.
T Consensus 204 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 204 EIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 1 222222333 4557777 44452 2 247888899998854
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.44 E-value=0.082 Score=54.24 Aligned_cols=205 Identities=13% Similarity=0.173 Sum_probs=109.9
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
+.+-...+..++|+|+.+.|+++.... ..|...++...-....+|...+..-.+++..++.++++.- ++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~--~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEP--GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTT--TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCC--CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 335556799999999877666666432 4888888753332223345567888999988876666554 7899999883
Q ss_pred CC------eEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CCcceEEe--------ecCCCCEE
Q 005235 569 KQ------RLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL--SSKPYRVL--------KCHPKDIT 627 (707)
Q Consensus 569 ~~------~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~--~~~~~~~l--------~~h~~~I~ 627 (707)
.. ..+..+. .+...+-.++|+|.++.|+++-...-..+|.+.. ....+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1122332 2345589999999988888888777777777654 11111111 12334588
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 628 NVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTS--SNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 628 ~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~--~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
+++|+|.. .+++.......|.++| . ++... -...|.. ..+ ..-..--.|+|.++|. |+..+.-+...
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d------~-~G~~~-~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy 245 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD------R-QGRVV-SSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFY 245 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-------T-T--EE-EEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC------C-CCCEE-EEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEE
Confidence 99999964 5666666777888884 2 22211 1222222 110 0001267899999985 45555666555
Q ss_pred EE
Q 005235 704 LY 705 (707)
Q Consensus 704 lW 705 (707)
+|
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 349
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.43 E-value=0.18 Score=55.68 Aligned_cols=259 Identities=15% Similarity=0.058 Sum_probs=148.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe-----EEEEEecCCcEEEEEEc---cCCCccEEEEEeCCeEEEEECCCCCch-----
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGR-----CLRVLEIGEAIQYVAWN---PLPELPVLAVSVGQDVLILNTGLGNEE----- 453 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~-----~l~~l~~~~~V~~v~~s---pdg~~~lla~s~d~~V~lwd~~~~~~~----- 453 (707)
....++.||..|.+||++...+. ++...+...+|..|+.- +..+...+|+-.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 44689999999999999986533 44555558899888754 333346788888889999987332211
Q ss_pred ------hcccc-----cceeeeccc-------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235 454 ------EQRRV-----KDLLHVETP-------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA 515 (707)
Q Consensus 454 ------~~~~~-----~~v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d 515 (707)
+..|. -.+....|. +..-+.||.+.+++.+.-.........--...+++.+..+.|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 01111 011111111 445567888888876654433333333344567888888899998876
Q ss_pred CCccEEEEEECCC--------------------Ccee--eeeeccCCCeEEE---EEeCCCCEEEEEeCCeEEEEECCCC
Q 005235 516 GESRAIFMHQLSK--------------------KLSH--RIPFKLHGLPVSS---VFHPTRSIFFVSTKKNIRVYDLLKQ 570 (707)
Q Consensus 516 g~~~~V~Iwdl~~--------------------~~~~--~~~~~~~~~V~~v---~fspd~~~l~v~sdg~I~iwDl~~~ 570 (707)
. .+..|.... ++.. ...|.....+..+ .++.....+++-+.+++.+.+.. |
T Consensus 196 ~---~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G 271 (418)
T PF14727_consen 196 W---TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G 271 (418)
T ss_pred e---eEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C
Confidence 5 666665311 0100 0122223344443 34445566777778889888864 5
Q ss_pred eEEEEEeCCCCCeEEEEEcC----CC---CEEEEEECCCcEEEEECCCCCcceEEeecCCCCE--EEEEEcCCCCEEEEE
Q 005235 571 RLIKKLETGLKEVSSIAIHP----AG---DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI--TNVAFHRSYPLFASC 641 (707)
Q Consensus 571 ~~~~~l~~~~~~I~sl~~sp----dg---~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I--~~vafspdg~llaSg 641 (707)
.+....+-...+...+.|.. .+ ..+++++.++.+.||.=. ++.-..+....+| .-..|..-.-+|++-
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~---~L~WsA~l~~~PVal~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT---TLVWSAQLPHVPVALSVANFNGLKGLIVSL 348 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC---eEEEecCCCCCCEEEEecccCCCCceEEEE
Confidence 54433332222222222221 22 258899999999988532 2222222222222 222233334489999
Q ss_pred eCCCcEEEEec
Q 005235 642 SDDCTAYVFHG 652 (707)
Q Consensus 642 s~Dg~I~Vwd~ 652 (707)
+.+|.+.+-.+
T Consensus 349 s~~G~L~v~YL 359 (418)
T PF14727_consen 349 SDEGQLSVSYL 359 (418)
T ss_pred cCCCcEEEEEe
Confidence 99999999844
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.36 E-value=0.051 Score=55.75 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=104.7
Q ss_pred CcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccc
Q 005235 381 LKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 381 l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~ 457 (707)
|...|....+++.....+.|...+. +|+.++.+.. .+....|++..++ .++.+. .++.+.++.+......+...
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~~~~~~ 103 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTTSLDRA 103 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----TT--EE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEeccccccchh
Confidence 3344455568888888888888886 5899988877 4678999998887 344444 37888888875432221111
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--C--ceee
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK--K--LSHR 533 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~--~--~~~~ 533 (707)
. +..+.+ .....+...+-.++|.+.++.|+++.... ...|+.+.. . ....
T Consensus 104 ~------------------~~~~~l-----~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 104 D------------------VQKISL-----GFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp E------------------EEEEE--------S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EE
T ss_pred h------------------ceEEec-----ccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceee
Confidence 0 001100 01113556789999999988888776544 344444432 1 1110
Q ss_pred ee---e----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---------CCeEEEEEcCCCCEE
Q 005235 534 IP---F----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---------KEVSSIAIHPAGDNL 595 (707)
Q Consensus 534 ~~---~----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---------~~I~sl~~spdg~~L 595 (707)
.. + .....+.+++++|....|++-+ .+.|.++| .+|+.+..+.-.. ...-.|+|.++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00 1 1234678999999876666655 68899999 5677666554322 247889999999555
Q ss_pred EEEECCCcEEEE
Q 005235 596 IVGSREGKLCWF 607 (707)
Q Consensus 596 ~sGs~Dg~I~vw 607 (707)
++ |.-+..++|
T Consensus 237 Iv-sEpNlfy~f 247 (248)
T PF06977_consen 237 IV-SEPNLFYRF 247 (248)
T ss_dssp EE-ETTTEEEEE
T ss_pred EE-cCCceEEEe
Confidence 54 466666655
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0013 Score=69.36 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=74.4
Q ss_pred ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCC
Q 005235 537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
.+...|..++|+|... ++..++ +..|.|.|+.+...+..+..+ ..+.+++|.-+. .+|..|-.+|.|.|||++...
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 6677899999999877 566666 999999999999999888888 789999998776 567778889999999999876
Q ss_pred cceEEeecC--CCCEEEEEE
Q 005235 614 KPYRVLKCH--PKDITNVAF 631 (707)
Q Consensus 614 ~~~~~l~~h--~~~I~~vaf 631 (707)
.++..+.+. ..+|..++.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAP 289 (463)
T ss_pred chHhhhhhhhccCcceeecc
Confidence 666655541 234544443
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.32 E-value=0.012 Score=69.04 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=102.7
Q ss_pred CCCCcEEEEE-eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCC------CccEEEEEeCCeEEEEECCCCCchhccc
Q 005235 385 PVACYLEYKG-STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLP------ELPVLAVSVGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 385 p~~~~~l~sg-s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg------~~~lla~s~d~~V~lwd~~~~~~~~~~~ 457 (707)
..+..+++.. .....|+-.|+++|+.+..|.....+.-+.+.|+. +...+.|-.++.+..||++.....
T Consensus 490 ~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---- 565 (794)
T PF08553_consen 490 DQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---- 565 (794)
T ss_pred ccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc----
Confidence 3444555543 45678999999999999999994433334454531 125677888888999998753210
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF- 536 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~- 536 (707)
.+|.-. ..........|++-+.+| +||+|+.+| .|++||-...+.. ..|
T Consensus 566 --------------------~v~~~~-----k~Y~~~~~Fs~~aTt~~G-~iavgs~~G---~IRLyd~~g~~AK-T~lp 615 (794)
T PF08553_consen 566 --------------------LVDSQS-----KQYSSKNNFSCFATTEDG-YIAVGSNKG---DIRLYDRLGKRAK-TALP 615 (794)
T ss_pred --------------------eeeccc-----cccccCCCceEEEecCCc-eEEEEeCCC---cEEeecccchhhh-hcCC
Confidence 111100 011234456677766555 799999988 9999995443332 455
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCeEEEEEC
Q 005235 537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl 567 (707)
+...+|.+|..+.||++|++.++.+|.|+++
T Consensus 616 ~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 7789999999999999999999999999996
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.30 E-value=0.051 Score=59.07 Aligned_cols=238 Identities=13% Similarity=0.183 Sum_probs=127.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-------------------CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhc
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG-------------------EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~-------------------~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~ 455 (707)
.++.|.+++..++...+ +... +.-.++.||||+. .|+... .+..|..+.+........
T Consensus 61 ~~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~ 138 (353)
T PF00930_consen 61 RDNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDS 138 (353)
T ss_dssp ETTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTE
T ss_pred ecCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccc
Confidence 35679999988885443 2221 1236788999995 455544 444454444321110000
Q ss_pred ccccceeeecccccccCCCCc--EEEEecCCccceE---E---eccCCCeEEEEEcCCCCEEE--EEeCCCCccEEEEEE
Q 005235 456 RRVKDLLHVETPTAPDDNMAS--IVSWLQHDKLDGI---R---LRHFKMVSSVEWHRRGDYLS--TVMPAGESRAIFMHQ 525 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~--i~iW~~~~~~~~~---~---~~h~~~V~~v~~sp~g~~la--t~s~dg~~~~V~Iwd 525 (707)
.-..+....++ .+|..... +.++++.++.... . ..-...+..+.|.+++..|+ ...++.....+.+.|
T Consensus 139 -~yp~~~~~~YP-k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d 216 (353)
T PF00930_consen 139 -QYPEVESIRYP-KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCD 216 (353)
T ss_dssp -SS-EEEEEE---BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEE
T ss_pred -cCCcccccccC-CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEE
Confidence 00012222222 12333333 3446666655422 1 13355688999999998443 444555556777888
Q ss_pred CCCCceeeeee--ccCCCe---EEEEEe-CCCCEEEEEe--C--CeEEEEECCCCeEEEEEeCCCCCeEE-EEEcCCCCE
Q 005235 526 LSKKLSHRIPF--KLHGLP---VSSVFH-PTRSIFFVST--K--KNIRVYDLLKQRLIKKLETGLKEVSS-IAIHPAGDN 594 (707)
Q Consensus 526 l~~~~~~~~~~--~~~~~V---~~v~fs-pd~~~l~v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~s-l~~spdg~~ 594 (707)
..++.+. ..+ ...+.| ....|. +++..++..+ + .+|.+++...+. .+.+..+.-.|.. +.++++++.
T Consensus 217 ~~tg~~~-~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 217 ASTGETR-VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNR 294 (353)
T ss_dssp ECTTTCE-EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSE
T ss_pred CCCCcee-EEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCE
Confidence 8877665 333 334433 356665 6666655544 5 467777777665 4466666566744 678888876
Q ss_pred EE-EEECC----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 595 LI-VGSRE----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 595 L~-sGs~D----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
|. ++..+ ..|+.-++.. ....+.|......-..+.|||++++++.
T Consensus 295 iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 295 IYFTANGDNPGERHLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEESSGGTTSBEEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred EEEEecCCCCCceEEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 65 44432 2355555551 3456667655544469999999997663
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.11 Score=57.20 Aligned_cols=216 Identities=13% Similarity=0.158 Sum_probs=145.3
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~ 456 (707)
.+.-++......++...++.|.+.|..+.+++...........++++|++. .++++.. ++.+.+.|..+...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid~~t~~~---- 152 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVIDAATNKV---- 152 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEeCCCCeE----
Confidence 333444555566666678899999988888888887777888999999995 4555544 57777777655421
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI-- 534 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-- 534 (707)
..+ ...+. .+ ..+++.|+|..+..+..+ .+.|.+.+.+..... .
T Consensus 153 ---------------------~~~--------~~vG~-~P-~~~a~~p~g~~vyv~~~~--~~~v~vi~~~~~~v~-~~~ 198 (381)
T COG3391 153 ---------------------TAT--------IPVGN-TP-TGVAVDPDGNKVYVTNSD--DNTVSVIDTSGNSVV-RGS 198 (381)
T ss_pred ---------------------EEE--------EecCC-Cc-ceEEECCCCCeEEEEecC--CCeEEEEeCCCccee-ccc
Confidence 111 01111 22 889999999977766632 249999997766443 1
Q ss_pred ---eeccCCCeEEEEEeCCCCEEEEEe--C--CeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEEC-CCcEE
Q 005235 535 ---PFKLHGLPVSSVFHPTRSIFFVST--K--KNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSR-EGKLC 605 (707)
Q Consensus 535 ---~~~~~~~V~~v~fspd~~~l~v~s--d--g~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~ 605 (707)
.+........+.+.|++..+.+.. . +.+...|..++..... +.........+.++|+|..+.+... .+.+.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 123344557789999999888876 2 5899999998877765 2222115677899999999988844 48899
Q ss_pred EEECCCCCcceEEeecCC---CCEEEEEEcCCC
Q 005235 606 WFDMDLSSKPYRVLKCHP---KDITNVAFHRSY 635 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~---~~I~~vafspdg 635 (707)
+.|..+. .......... ..+..+++.+..
T Consensus 279 vid~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 279 VIDGATD-RVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEeCCCC-ceeeeecccccccccceeccceeec
Confidence 9998876 4444443332 245666666543
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.26 Score=54.71 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=108.1
Q ss_pred eCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 395 STDGTVRIWEVESGRCLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
++..+|+|.|+.+|+.+... ... ...+++|.+++. .++....+..-. . . ....
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~-~~~y~~~~~~~~------~--~----------------~~~~ 200 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGK-GFFYTRFDEDQR------T--S----------------DSGY 200 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSS-EEEEEECSTTTS------S-------------------CCGC
T ss_pred CceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCC-EEEEEEeCcccc------c--c----------------cCCC
Confidence 33355999999999876532 221 123499999984 455555433100 0 0 0000
Q ss_pred CCcEEEEecCCccce---EEeccC-CC-eEEEEEcCCCCEEEEEeCCCCc-cEEEEEECCCC----ceeeeee-ccCCCe
Q 005235 474 MASIVSWLQHDKLDG---IRLRHF-KM-VSSVEWHRRGDYLSTVMPAGES-RAIFMHQLSKK----LSHRIPF-KLHGLP 542 (707)
Q Consensus 474 d~~i~iW~~~~~~~~---~~~~h~-~~-V~~v~~sp~g~~lat~s~dg~~-~~V~Iwdl~~~----~~~~~~~-~~~~~V 542 (707)
...|..|.+.+.... +..... .. ...+..+++|++|+..+..+.. ..+.+.++... ... ..+ .....+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~-~~l~~~~~~~ 279 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP-KLLSPREDGV 279 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE-EEEEESSSS-
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc-EEEeCCCCce
Confidence 112333333322211 111212 22 5678889999998877766655 78999999875 222 444 444444
Q ss_pred EEEEEeCCCCEEEEEe----CCeEEEEECCCCe---EEEEEeCCCCC--eEEEEEcCCCCEEEEE-ECCC--cEEEEECC
Q 005235 543 VSSVFHPTRSIFFVST----KKNIRVYDLLKQR---LIKKLETGLKE--VSSIAIHPAGDNLIVG-SREG--KLCWFDMD 610 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s----dg~I~iwDl~~~~---~~~~l~~~~~~--I~sl~~spdg~~L~sG-s~Dg--~I~vwDl~ 610 (707)
....-+..+.+++.+. .+.|...++.... ....+..+... +..+.. .+++|+.. ..++ .|+++++.
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 4444444444555443 3778888888754 23355555443 444444 45566554 4444 48899987
Q ss_pred CCCcceEEeec-CCCCEEEEEEcCCCC
Q 005235 611 LSSKPYRVLKC-HPKDITNVAFHRSYP 636 (707)
Q Consensus 611 ~~~~~~~~l~~-h~~~I~~vafspdg~ 636 (707)
.+ .....+.. -.+.|..+...++++
T Consensus 358 ~~-~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 358 DG-KESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp -T-EEEEEEESSSSSEEEEEES-TT-S
T ss_pred CC-cEEeeecCCcceEEeccCCCCCCC
Confidence 22 33333332 234456665555555
No 356
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.22 E-value=0.093 Score=55.61 Aligned_cols=191 Identities=16% Similarity=0.213 Sum_probs=114.4
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
+--.+|-|-|+..++.+..+...++..-.-+.++ .+.+.|.||.+....+.........++. ++.
T Consensus 115 TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~---~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-~F~----------- 179 (342)
T PF06433_consen 115 TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR---GFSMLCGDGSLLTVTLDADGKEAQKSTK-VFD----------- 179 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT---EEEEEETTSCEEEEEETSTSSEEEEEEE-ESS-----------
T ss_pred CCCCeEEEEECCCCceeeeecCCCEEEEEecCCC---ceEEEecCCceEEEEECCCCCEeEeecc-ccC-----------
Confidence 3445677888888888888887776655544444 4899999999988887744322111111 110
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeec-----------cCCCe
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFK-----------LHGLP 542 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~-----------~~~~V 542 (707)
. .....+..-++...+..++..+..| .|+--+++...... .++. ..+.-
T Consensus 180 -------~---------~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 180 -------P---------DDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp -------T---------TTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred -------C---------CCcccccccceECCCCeEEEEecCC---EEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 0 0111111223344445555555555 66655555543210 1110 12456
Q ss_pred EEEEEeCCCCEEEEEe----C-------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEEC
Q 005235 543 VSSVFHPTRSIFFVST----K-------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGS-REGKLCWFDM 609 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s----d-------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs-~Dg~I~vwDl 609 (707)
+-+++|+....|++.- + ..|-+||+.+++.+.++... .++.+|+++.+.. +|++.+ .++.|.+||.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 6789998877777642 1 25999999999999998754 4688999998875 554444 5789999999
Q ss_pred CCCCcceEEeec
Q 005235 610 DLSSKPYRVLKC 621 (707)
Q Consensus 610 ~~~~~~~~~l~~ 621 (707)
.++ ++++.+..
T Consensus 320 ~tG-k~~~~~~~ 330 (342)
T PF06433_consen 320 ATG-KLVRSIEQ 330 (342)
T ss_dssp TT---EEEEE--
T ss_pred cCC-cEEeehhc
Confidence 988 77777653
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.11 Score=55.22 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=130.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
+++....++++.-..+.|.-|+..+|+. ..+...+.+.++.....+ .++.++.. .+.++++..+..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~--g~Lv~~~~-g~~~~~~~~~~~---------- 97 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAG--GRLIACEH-GVRLLDPDTGGK---------- 97 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCC--CeEEEEcc-ccEEEeccCCce----------
Confidence 4566667888888888999999887754 355555555555544443 13333333 344555433311
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC---CC-----CccEEEEEECC-CCceee
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP---AG-----ESRAIFMHQLS-KKLSHR 533 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~---dg-----~~~~V~Iwdl~-~~~~~~ 533 (707)
+..+.... .-.-....+.+...|+|.+-++... .+ ..+ .+|-+. .+...
T Consensus 98 --------------~t~~~~~~-----~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~- 155 (307)
T COG3386 98 --------------ITLLAEPE-----DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVV- 155 (307)
T ss_pred --------------eEEecccc-----CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEE-
Confidence 01110000 0011234456777888887666554 11 123 444444 34443
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C----e-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q----R-LIKKLETGLKEVSSIAIHPAGDNLIVGSREG- 602 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~----~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg- 602 (707)
..+ .+-...+.++|||+++.|+++. .+.|..|++.. + + ....+....+..-.+++..+|.+-+++-.+|
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~ 235 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG 235 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence 444 5456678899999999988886 58888888762 1 1 1112222335566778888888776555554
Q ss_pred cEEEEECCCCCcceEEeecCCCCEEEEEEc-CCCC-EEEEEe
Q 005235 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFH-RSYP-LFASCS 642 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafs-pdg~-llaSgs 642 (707)
.|.+|+.+ + +++..+.-....+++++|- |+.+ +++++.
T Consensus 236 ~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 236 RVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred eEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 89999998 5 7777777776778888884 3444 444444
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0022 Score=72.04 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=79.5
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc
Q 005235 586 IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665 (707)
Q Consensus 586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~ 665 (707)
-+++..+++++.|+.-|.|+||+-..+........+-.+.+..+..|++..++|.|+..|.|.||-+. . ....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~------~-~~p~ 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN------K-ELPR 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh------c-cCCC
Confidence 34455789999999999999999876643333333445667778889999999999999999999443 2 1111
Q ss_pred ceEEe-eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 666 PLEIL-RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 666 pl~~l-~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+...+ ..|.. +...|++++|++++..|++|..-|+|.+-
T Consensus 112 ~~~~~t~~d~~-~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 112 DLDYVTPCDKS-HKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred cceeecccccc-CCceEEEEEecccccEEeecCCCceEEEE
Confidence 11112 12221 12339999999999999999999998753
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.17 E-value=0.037 Score=65.17 Aligned_cols=131 Identities=13% Similarity=0.215 Sum_probs=89.4
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEE
Q 005235 559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA-------GDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDIT 627 (707)
Q Consensus 559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd-------g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~ 627 (707)
...|+-.||..|+.+.....+... .-..|.|+ ....++|-.+..|+.||++..+..+..-.. .....+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 488999999999999999887543 23344443 345677888899999999976422211112 234566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|++-+.+| +||.||.+|.||+||- +..+ .-..|.|-..+ |.+|..+.||+||++.+.. .+.|+
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~-----~g~~----AKT~lp~lG~p----I~~iDvt~DGkwilaTc~t-yLlLi 644 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDR-----LGKR----AKTALPGLGDP----IIGIDVTADGKWILATCKT-YLLLI 644 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecc-----cchh----hhhcCCCCCCC----eeEEEecCCCcEEEEeecc-eEEEE
Confidence 77776666 6899999999999962 1111 12334555555 9999999999999777643 44443
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.14 Score=56.74 Aligned_cols=165 Identities=12% Similarity=0.096 Sum_probs=91.7
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec---cCCC-----eEEEEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK---LHGL-----PVSSVF 547 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~---~~~~-----V~~v~f 547 (707)
.|.+|+..+.......--.+.|.++.|+.+ ..|++...+| .++++++.... + ..++ .... +....|
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG---~v~vy~~~G~~-~-fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDG---TVRVYDLFGEF-Q-FSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCC---EEEEEeCCCce-e-echhhhccccCccccccccccc
Confidence 477888777766553322389999999875 5666777888 99999997554 2 2221 1112 222233
Q ss_pred eCCCCEEEEEeCCeEEEEECCCCe-EEEEEe---C-------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 548 HPTRSIFFVSTKKNIRVYDLLKQR-LIKKLE---T-------GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 548 spd~~~l~v~sdg~I~iwDl~~~~-~~~~l~---~-------~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
..+| .++...++.+.+.+-.... ..+.+. . .........++.+....+....++.+.+.+-...
T Consensus 136 ~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---- 210 (410)
T PF04841_consen 136 YKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---- 210 (410)
T ss_pred CCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----
Confidence 4455 2222334555444322211 111111 0 0000001223444445555555556664443321
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
..+. ..+++..+++||+|+++|.-..+|.+.|...
T Consensus 211 ~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 211 KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 1122 2467999999999999999999999988853
No 361
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.11 E-value=0.32 Score=57.28 Aligned_cols=294 Identities=11% Similarity=0.056 Sum_probs=149.5
Q ss_pred cEEEEEeCCCcEEEEeC-CCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-----
Q 005235 389 YLEYKGSTDGTVRIWEV-ESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR----- 457 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~-~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~----- 457 (707)
.+++.|..+..+.+--. ..+..+..... ...|.-.+|-.|. .+|+++..||.+.-+.+......+...
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l 627 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKKVTL 627 (1096)
T ss_pred eEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence 37888877666555433 33333322222 3445555665655 478888899988766654432111110
Q ss_pred -ccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC
Q 005235 458 -VKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 458 -~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
+.++.--.|. ..-+.++....+|...++..-.-......-.-+.|+. -+..++++..+ .+.+..++.-
T Consensus 628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~----~l~i~tid~i 703 (1096)
T KOG1897|consen 628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG----ALTIGTIDEI 703 (1096)
T ss_pred CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC----ceEEEEecch
Confidence 1111000110 1223344445555443333211111000001122322 23455555533 5777666543
Q ss_pred cee-eeeeccCCCeEEEEEeCCCCEEEEEeC------C---------eEEEEECCCCeEEEEEeCCC----CCeEEEEEc
Q 005235 530 LSH-RIPFKLHGLPVSSVFHPTRSIFFVSTK------K---------NIRVYDLLKQRLIKKLETGL----KEVSSIAIH 589 (707)
Q Consensus 530 ~~~-~~~~~~~~~V~~v~fspd~~~l~v~sd------g---------~I~iwDl~~~~~~~~l~~~~----~~I~sl~~s 589 (707)
+.. .+++.....++.+++++...++++.++ . .++++|-.+-+.+...+-.. -.|.++.|.
T Consensus 704 qkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~ 783 (1096)
T KOG1897|consen 704 QKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFT 783 (1096)
T ss_pred hhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeec
Confidence 322 133466677888999986666666542 1 36777766655544333211 125556687
Q ss_pred CC-CCEEEEEEC----------CCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q 005235 590 PA-GDNLIVGSR----------EGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS 656 (707)
Q Consensus 590 pd-g~~L~sGs~----------Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~ 656 (707)
.| +.++++|+. .|+|.||.+... ..++....+ .+++.++.. -+|+++|+- ..+|++|+.
T Consensus 784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~---- 855 (1096)
T KOG1897|consen 784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEW---- 855 (1096)
T ss_pred CCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEc----
Confidence 77 788888864 588999988763 333333222 244444322 156676654 568999944
Q ss_pred CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
..... +..-..|... +..+...-.|..|+.|..=+.|.+
T Consensus 856 --t~~~e---Lr~e~~~~~~----~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 856 --TTERE---LRIECNISNP----IIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred --cccce---ehhhhcccCC----eEEEEEEecCcEEEEeeccceEEE
Confidence 33322 2222333333 666666667777777765555443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.11 E-value=0.27 Score=51.13 Aligned_cols=186 Identities=17% Similarity=0.238 Sum_probs=107.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--------------eeccCCCeEEEE---EeCCCCEEEE
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI--------------PFKLHGLPVSSV---FHPTRSIFFV 556 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~--------------~~~~~~~V~~v~---fspd~~~l~v 556 (707)
...|..+...++-+.|++.+. + .+.++++..-..... .+.....+..++ -......|++
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd-~---~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v 110 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSD-G---QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV 110 (275)
T ss_pred cceEEEEEEecccCEEEEEcC-C---ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence 334999999998888877764 5 999999876444310 112223444444 2234456777
Q ss_pred EeCCeEEEEECCCC-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC---------
Q 005235 557 STKKNIRVYDLLKQ-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--------- 622 (707)
Q Consensus 557 ~sdg~I~iwDl~~~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--------- 622 (707)
+..+.|.+|..... +..+.+... ..+.+++|. ++.|++|..+ ...+.|+.++ .+...+...
T Consensus 111 a~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~ 185 (275)
T PF00780_consen 111 AVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSR 185 (275)
T ss_pred EECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhc
Confidence 77889999987653 456666655 678999998 6788888755 5888899865 333322211
Q ss_pred ---CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 623 ---PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 623 ---~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
..++..+... ++.+|++. ++ +-+|- +....+.. -..+.-... ..++++ ..++|+..+.+
T Consensus 186 ~~~~~~~~~~~~~-~~e~Ll~~-~~--~g~fv-----~~~G~~~r--~~~i~W~~~-----p~~~~~--~~pyli~~~~~ 247 (275)
T PF00780_consen 186 NSSSKPLGIFQLS-DNEFLLCY-DN--IGVFV-----NKNGEPSR--KSTIQWSSA-----PQSVAY--SSPYLIAFSSN 247 (275)
T ss_pred ccCCCceEEEEeC-CceEEEEe-cc--eEEEE-----cCCCCcCc--ccEEEcCCc-----hhEEEE--ECCEEEEECCC
Confidence 1233333333 34455432 22 22331 22222221 112222222 566666 45788888765
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
+ |-||++
T Consensus 248 ~-iEV~~~ 254 (275)
T PF00780_consen 248 S-IEVRSL 254 (275)
T ss_pred E-EEEEEC
Confidence 4 999875
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.10 E-value=0.26 Score=54.72 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=86.4
Q ss_pred EEEEcCCCCEEEEEeCCCC--------ccEEEEEECCCCcee-eeee-ccC-CC-eEEEEEeCCCCEEEEEe----C-Ce
Q 005235 499 SVEWHRRGDYLSTVMPAGE--------SRAIFMHQLSKKLSH-RIPF-KLH-GL-PVSSVFHPTRSIFFVST----K-KN 561 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg~--------~~~V~Iwdl~~~~~~-~~~~-~~~-~~-V~~v~fspd~~~l~v~s----d-g~ 561 (707)
.++|.++|+.|+....+.. ...|..|.+.+.... ...| ... .. ...+..++++++|++.. + ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 4999999998887776553 567999999887654 1344 322 23 56888999999988754 3 56
Q ss_pred EEEEECCCC----eEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCc--ceEEeecCCCC--EEEEE
Q 005235 562 IRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSK--PYRVLKCHPKD--ITNVA 630 (707)
Q Consensus 562 I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~--~~~~l~~h~~~--I~~va 630 (707)
|.+.++..+ ...+.+......+....-+.++.+++... ..+.|.-.++..... ....+-.|... +..+.
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 889998874 23333443333443333333444444332 246777788876532 12356666654 44444
Q ss_pred EcCCCCEEEEEeCCC--cEEEEec
Q 005235 631 FHRSYPLFASCSDDC--TAYVFHG 652 (707)
Q Consensus 631 fspdg~llaSgs~Dg--~I~Vwd~ 652 (707)
... +.++++...++ .|++++.
T Consensus 334 ~~~-~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 334 LFK-DYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EET-TEEEEEEEETTEEEEEEEET
T ss_pred EEC-CEEEEEEEECCccEEEEEEC
Confidence 432 23555555666 4666643
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0023 Score=71.09 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE-EEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVS-SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~-sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
...+..+.|+|...++|.++ +|.|.++.+. -+.+.++..+...++ +++|.|||+.||+|-.||+|++.|+.++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 44677899999999999998 8999999988 556777875666666 99999999999999999999999999885444
Q ss_pred EEeecCCCCEEEEEEcC
Q 005235 617 RVLKCHPKDITNVAFHR 633 (707)
Q Consensus 617 ~~l~~h~~~I~~vafsp 633 (707)
..+..-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33333456677777763
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.94 E-value=0.33 Score=48.33 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE-
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYD- 566 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD- 566 (707)
..+.-..+|+|+|++-...+-. .+.++.|.....-. ..+..-+.-+.++|+.+.+.+..-. +-.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~--~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE--LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce--eeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 3445567899999776655431 23455554432211 2224445567889998877776654 67786677
Q ss_pred -CCCCe-----EEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CC
Q 005235 567 -LLKQR-----LIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SY 635 (707)
Q Consensus 567 -l~~~~-----~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg 635 (707)
..+|. .+..+.. .....-.+++.-+|.+.++.-..++|.-+|..++ +.+..+.-....|++++|-- +.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCCCc
Confidence 66653 3333332 1122345666778888888888899999999988 77888888899999999953 33
Q ss_pred CEE-EEEe
Q 005235 636 PLF-ASCS 642 (707)
Q Consensus 636 ~ll-aSgs 642 (707)
.+| +++.
T Consensus 267 d~~yvT~a 274 (310)
T KOG4499|consen 267 DILYVTTA 274 (310)
T ss_pred cEEEEEeh
Confidence 344 3443
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.94 E-value=0.057 Score=62.49 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=106.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC------CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC--eEEEE
Q 005235 495 KMVSSVEWHRRGDYLSTVMP------AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK--NIRVY 565 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~------dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg--~I~iw 565 (707)
..+.+.+++|+|+.+|.... + ....|.+.+..... .++ ... ......|+|+|..|++..++ .+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d-~~s~Lwv~~~gg~~---~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD-PASSLWVGPLGGVA---VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC-cceEEEEEeCCCcc---eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 46788999999999887762 2 23466666653332 333 222 37888999998877766532 23333
Q ss_pred -----------ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE---EECCCCCcce---EEee-cCCCCEE
Q 005235 566 -----------DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW---FDMDLSSKPY---RVLK-CHPKDIT 627 (707)
Q Consensus 566 -----------Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v---wDl~~~~~~~---~~l~-~h~~~I~ 627 (707)
++..+.... ...+.|.++.|||||..|+... +|+|++ -....+...+ ..+. .-...+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 333332222 1235699999999999988766 477877 4433332111 1122 2233468
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
++.|..++.++ .+..++...+|.+...+...+ .+.+. .. ++.+|+=++. -|+.+.++|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--------~~~~~n~~~----~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--------ALPSRNLSA----PVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCcccc--------ccCCCCccC----ceEEEecCCc--eEEEEcCCceEE
Confidence 89999999865 555566666776543321111 11221 22 2777777763 355556666544
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.18 Score=51.47 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=129.5
Q ss_pred CCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235 406 ESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD 484 (707)
Q Consensus 406 ~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~ 484 (707)
+.|+++........-..|+|+|.-...++.+-.-| ...++|+....... .+- .
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-----------------------~~~---s 109 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-----------------------TLV---S 109 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE-----------------------EEe---c
Confidence 35788877777777788999998754444444444 45667765543211 000 0
Q ss_pred ccceEEeccCCCeEEEEEcCCCCEEEEEeCC--CCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC-
Q 005235 485 KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA--GESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK- 560 (707)
Q Consensus 485 ~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d--g~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg- 560 (707)
.....+.+|. .||++|.+|...-.| .+.+.|-|||...+-...-.| .+.-....+.+.+||..++++..|
T Consensus 110 ~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI 183 (366)
T COG3490 110 QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI 183 (366)
T ss_pred ccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCce
Confidence 0111233443 689999999876544 245689999998654443556 666677889999999999987532
Q ss_pred ------------------eEEEEECCCCeEEEEEe----CCCCCeEEEEEcCCCCEEEEEECCCcE----EEEECCCCCc
Q 005235 561 ------------------NIRVYDLLKQRLIKKLE----TGLKEVSSIAIHPAGDNLIVGSREGKL----CWFDMDLSSK 614 (707)
Q Consensus 561 ------------------~I~iwDl~~~~~~~~l~----~~~~~I~sl~~spdg~~L~sGs~Dg~I----~vwDl~~~~~ 614 (707)
++.+.|..++.++.+.. .+...|..+++.++|..++.+-+.|.- -+.-.....+
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 24445555555554332 233458888999988777766554321 0111111223
Q ss_pred ceEEeec-------CCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecc
Q 005235 615 PYRVLKC-------HPKDITNVAFHRSYPLFASCSDDC-TAYVFHGM 653 (707)
Q Consensus 615 ~~~~l~~-------h~~~I~~vafspdg~llaSgs~Dg-~I~Vwd~~ 653 (707)
+++.+.. ....|-+|+.+.+..+++..|-.| ...+||..
T Consensus 264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 4433321 224577888888777777666554 56789544
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.91 E-value=0.32 Score=55.39 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=121.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCc------E-EEEEEccCCCccEEEEE---------eCCeEEEEECCCCCc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEA------I-QYVAWNPLPELPVLAVS---------VGQDVLILNTGLGNE 452 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~------V-~~v~~spdg~~~lla~s---------~d~~V~lwd~~~~~~ 452 (707)
..++.++.+|.|.-+|..||+.+..+..... + .+..+.. + .+++++ .++.|..+|..++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6888889999999999999999988876433 1 1222222 3 344443 256788888887754
Q ss_pred hhccccc---------------------------ceeeeccc-ccccCCC------------------CcEEEEecCCcc
Q 005235 453 EEQRRVK---------------------------DLLHVETP-TAPDDNM------------------ASIVSWLQHDKL 486 (707)
Q Consensus 453 ~~~~~~~---------------------------~v~~~~~~-~~~~~~d------------------~~i~iW~~~~~~ 486 (707)
.-..... ..+...-. +..+..+ +.+.-++..++.
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 3221110 00000000 2222222 256666666555
Q ss_pred ceEEe---ccCC----CeEEEEEc----CCCC---EEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCC
Q 005235 487 DGIRL---RHFK----MVSSVEWH----RRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552 (707)
Q Consensus 487 ~~~~~---~h~~----~V~~v~~s----p~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~ 552 (707)
..-.. .|.. ......+. -+|. .+++++.+| .+...|..+++.. -.+... ...++.+| .
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G---~l~ald~~tG~~~-W~~~~~--~~~~~~~~--~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG---FFYVLDRTTGKLI-SARPEV--EQPMAYDP--G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc---eEEEEECCCCcEe-eEeEee--ccccccCC--c
Confidence 43221 1110 00000111 1333 566677777 8999999998766 333111 11223333 2
Q ss_pred EEEEE-------------------eCCeEEEEECCCCeEEEEEeCCC--------CC--eEEEEEcCCCCEEEEEECCCc
Q 005235 553 IFFVS-------------------TKKNIRVYDLLKQRLIKKLETGL--------KE--VSSIAIHPAGDNLIVGSREGK 603 (707)
Q Consensus 553 ~l~v~-------------------sdg~I~iwDl~~~~~~~~l~~~~--------~~--I~sl~~spdg~~L~sGs~Dg~ 603 (707)
.++++ .++.|..+|+.+++.+.+..... .. ...+.. .+..|++|+.||.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence 22221 25789999999998887766441 11 122333 4678999999999
Q ss_pred EEEEECCCCCcceEEeec
Q 005235 604 LCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~ 621 (707)
|+.+|..++ +.+-.++.
T Consensus 418 l~ald~~tG-~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTG-KELWKFRT 434 (488)
T ss_pred EEEEECCCC-ceeeEEEC
Confidence 999999998 44544543
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.90 E-value=0.37 Score=48.67 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=105.9
Q ss_pred EEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235 402 IWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL 481 (707)
Q Consensus 402 IWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~ 481 (707)
.|.+..++|+.. .-+...++....++.++..+.+.-.|+.+|. .+|.
T Consensus 2 rW~vd~~kCVDa-------spLVV~~dskT~v~igSHs~~~~avd~~sG~--------------------------~~We 48 (354)
T KOG4649|consen 2 RWAVDLRKCVDA-------SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGN--------------------------LIWE 48 (354)
T ss_pred ceeccchhhccC-------CcEEEecCCceEEEEecCCceEEEecCCCCc--------------------------EEee
Confidence 466666666521 1233445554567777778888877776653 2342
Q ss_pred cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe-EEEEEeCCCCEEEEEe-C
Q 005235 482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP-VSSVFHPTRSIFFVST-K 559 (707)
Q Consensus 482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V-~~v~fspd~~~l~v~s-d 559 (707)
.. ....|.+-+.- -|++++.|+..| .+++.+..++... ..|...+.| ......+++.++..++ |
T Consensus 49 ~i---------lg~RiE~sa~v-vgdfVV~GCy~g---~lYfl~~~tGs~~-w~f~~~~~vk~~a~~d~~~glIycgshd 114 (354)
T KOG4649|consen 49 AI---------LGVRIECSAIV-VGDFVVLGCYSG---GLYFLCVKTGSQI-WNFVILETVKVRAQCDFDGGLIYCGSHD 114 (354)
T ss_pred hh---------hCceeeeeeEE-ECCEEEEEEccC---cEEEEEecchhhe-eeeeehhhhccceEEcCCCceEEEecCC
Confidence 21 11222221111 478899999988 9999999999666 566222222 2345678899999998 9
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
++.+..|..+..++.+.+.+.+...+-++.|....|.+++..|.|.--...
T Consensus 115 ~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 115 GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred CcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 999999999999999988776666677788855566666666766554444
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.87 E-value=1.3 Score=50.80 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=109.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEE----------EEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE--AIQY----------VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~--~V~~----------v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
..+|.++.++.|.-.|..||+.+..+.... .+.. +++. ++ .+++++.++.|.-+|..++..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~---- 142 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKV---- 142 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCE----
Confidence 578888888999999999999998876521 1211 1222 22 577778888888888877743
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE-EEEcCCCCEEEEEeCC---CCccEEEEEECCCCcee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS-VEWHRRGDYLSTVMPA---GESRAIFMHQLSKKLSH 532 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~-v~~sp~g~~lat~s~d---g~~~~V~Iwdl~~~~~~ 532 (707)
+|........ ....+.+ -... ++ .+++++.. +..+.|..+|..+++..
T Consensus 143 ----------------------~W~~~~~~~~----~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 143 ----------------------VWSKKNGDYK----AGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ----------------------Eeeccccccc----ccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 3332211000 0000100 0000 22 33333211 01236777777766655
Q ss_pred eeee---cc-----------------------------CCCeE-EEEEeCCCCEEEEEe-C-----C-----------eE
Q 005235 533 RIPF---KL-----------------------------HGLPV-SSVFHPTRSIFFVST-K-----K-----------NI 562 (707)
Q Consensus 533 ~~~~---~~-----------------------------~~~V~-~v~fspd~~~l~v~s-d-----g-----------~I 562 (707)
-.+ .. .+.+. .+++.|...++++++ . + .|
T Consensus 195 -W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 195 -WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred -EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 332 10 11111 346666666777655 1 2 67
Q ss_pred EEEECCCCeEEEEEeCCCCC---------eEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcce
Q 005235 563 RVYDLLKQRLIKKLETGLKE---------VSSIAIHPAGD---NLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~~~---------I~sl~~spdg~---~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
.-.|+.+|+....++..... ..-+.+..+|. .|+.++.+|.++++|..++ +++
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 88899999988777642211 22233434665 7889999999999999987 443
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.85 E-value=0.0027 Score=42.75 Aligned_cols=37 Identities=35% Similarity=0.602 Sum_probs=32.6
Q ss_pred ceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 666 pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++..+..|... |.++.|++.+.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGP----VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCc----eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667778776 99999999999999999999999996
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.84 E-value=0.0038 Score=41.96 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
++++..+..|...|.++.|++.+..+++|+.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778888999999999999999999999999996
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.79 E-value=0.33 Score=56.26 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---------CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEE--
Q 005235 496 MVSSVEWHRRGDYLSTVMPAG---------ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRV-- 564 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg---------~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~i-- 564 (707)
..+.-.|+|+|..|++.+... ..+.+.+..+..+... . ...+.|..+.|+|||..++...++.|.+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~ 474 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S--RVPGPISELQLSRDGVRAAMIIGGKVYLAV 474 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhh-h--ccCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence 377889999999888876431 1123333344333322 1 2356799999999999998877888877
Q ss_pred -EECCCCeE-E---EEEeCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CCCCEEEEEEcCCCC
Q 005235 565 -YDLLKQRL-I---KKLETGLK-EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HPKDITNVAFHRSYP 636 (707)
Q Consensus 565 -wDl~~~~~-~---~~l~~~~~-~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~~~I~~vafspdg~ 636 (707)
-....|.. + ..+..... .+.+++|.+++.++ ++..++...+|-+...+.....+.. ....+.+|+-++. .
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~ 552 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T 552 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e
Confidence 44344431 1 11322223 36889999988854 5555554445544433222222233 2566777777763 3
Q ss_pred EEEEEeCCCcEE
Q 005235 637 LFASCSDDCTAY 648 (707)
Q Consensus 637 llaSgs~Dg~I~ 648 (707)
++....+|.+.
T Consensus 553 -iyv~~~~g~~~ 563 (591)
T PRK13616 553 -VYVTDARAVLQ 563 (591)
T ss_pred -EEEEcCCceEE
Confidence 44445566443
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=1 Score=53.28 Aligned_cols=301 Identities=10% Similarity=0.083 Sum_probs=157.0
Q ss_pred CCCcEEEEEeCCCcEEEEeCC-CCeEEEE--Eec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----
Q 005235 386 VACYLEYKGSTDGTVRIWEVE-SGRCLRV--LEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE---- 453 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~-tg~~l~~--l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~---- 453 (707)
.++.....|..+|.+...-+. +++.+.. ++. .+-..|+..-++| .+++++.-|.-.+..+.+....
T Consensus 267 ~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~ 344 (1096)
T KOG1897|consen 267 LQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV 344 (1096)
T ss_pred CCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh
Confidence 345566677888887666555 5544333 111 4566888888999 7888887776667666553211
Q ss_pred --hc--ccccceeeeccc------------ccccCCCCcEEEEecCCccceE-Eecc--CCCeEEEE--EcCC-CCEEEE
Q 005235 454 --EQ--RRVKDLLHVETP------------TAPDDNMASIVSWLQHDKLDGI-RLRH--FKMVSSVE--WHRR-GDYLST 511 (707)
Q Consensus 454 --~~--~~~~~v~~~~~~------------~~~~~~d~~i~iW~~~~~~~~~-~~~h--~~~V~~v~--~sp~-g~~lat 511 (707)
+. ..-.++..+..- ...+..+|++++....-+-... .... -..+..+. +.++ .+||+.
T Consensus 345 ~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvl 424 (1096)
T KOG1897|consen 345 VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVL 424 (1096)
T ss_pred hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEE
Confidence 00 011111111110 1223356777766443211110 1111 23444444 3332 125554
Q ss_pred EeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 005235 512 VMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIH 589 (707)
Q Consensus 512 ~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s 589 (707)
+-.+ .-++..+... ...... +.......+..|. .++.|+-.+...||+++-. ..+..+... ..++....+
T Consensus 425 sf~~----eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p-~~~ti~~~~ 496 (1096)
T KOG1897|consen 425 SFIS----ETRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP-GKITIGVVS 496 (1096)
T ss_pred Eecc----ceEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC-CceEEEEEe
Confidence 4433 3344444433 210111 2223333333332 3444555556678888754 233444433 345555555
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEecccccCCCCC
Q 005235 590 PAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSY------PLFASCSDDCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 590 pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg------~llaSgs~Dg~I~Vwd~~~~~Dl~~~ 661 (707)
.+...+++++.++.+...++.... +.... .....|.|+.++|-| +++|.|.++..+.+--. ...
T Consensus 497 ~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~------~pd 568 (1096)
T KOG1897|consen 497 ANASQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF------LPD 568 (1096)
T ss_pred ecceEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE------CCC
Confidence 566677777777888888877653 22111 124678999999742 27888887776655421 111
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
-...+...+.+...+ +.|.-.+|--+..+|.++..||.+..|.
T Consensus 569 ~~~~~~~~l~~~~iP--RSIl~~~~e~d~~yLlvalgdG~l~~fv 611 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIP--RSILLTTFEGDIHYLLVALGDGALLYFV 611 (1096)
T ss_pred cceeeeeccCCCccc--hheeeEEeeccceEEEEEcCCceEEEEE
Confidence 111122223333222 3366677777788999999999887764
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.62 E-value=0.047 Score=57.81 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=113.6
Q ss_pred EcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEEec-----CCcE-EEEEEcc
Q 005235 355 LCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVE-SGRCLRVLEI-----GEAI-QYVAWNP 427 (707)
Q Consensus 355 l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l~~-----~~~V-~~v~~sp 427 (707)
+.|...-.-+.+....++..+|-|-...-||....-+++-+.||++.-..+. .|+...+... .+++ ..-++..
T Consensus 114 ~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 114 FTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp ESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred cCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 3444333333344445556666666666688777778888999999988887 5666533221 2222 2334444
Q ss_pred CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc---eEEeccCCCeEEEEEcC
Q 005235 428 LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD---GIRLRHFKMVSSVEWHR 504 (707)
Q Consensus 428 dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~---~~~~~h~~~V~~v~~sp 504 (707)
.+. .++-.+..|.|+-.++...... ...-|.+.+... .-. .+.-.-+++|+
T Consensus 194 ~~~-~~~F~Sy~G~v~~~dlsg~~~~----------------------~~~~~~~~t~~e~~~~Wr---PGG~Q~~A~~~ 247 (342)
T PF06433_consen 194 DGG-RLYFVSYEGNVYSADLSGDSAK----------------------FGKPWSLLTDAEKADGWR---PGGWQLIAYHA 247 (342)
T ss_dssp TTT-EEEEEBTTSEEEEEEETTSSEE----------------------EEEEEESS-HHHHHTTEE---E-SSS-EEEET
T ss_pred CCC-eEEEEecCCEEEEEeccCCccc----------------------ccCcccccCccccccCcC---Ccceeeeeecc
Confidence 332 4555777788777776543211 123343321110 001 12233467777
Q ss_pred CCCEEEEEeCCC-------CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC-CEEEEEe--CCeEEEEECCCCeEEE
Q 005235 505 RGDYLSTVMPAG-------ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR-SIFFVST--KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 505 ~g~~lat~s~dg-------~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~-~~l~v~s--dg~I~iwDl~~~~~~~ 574 (707)
..+.|.+....+ ....|.++|+.+++.. ..+.....+.+++.+.+. ++|++.+ ++.|.+||..+++.+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv-~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV-ARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE-EEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE-EEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 666555544332 3458889999999887 666555668899998865 5776654 6899999999999998
Q ss_pred EEeC
Q 005235 575 KLET 578 (707)
Q Consensus 575 ~l~~ 578 (707)
++..
T Consensus 327 ~~~~ 330 (342)
T PF06433_consen 327 SIEQ 330 (342)
T ss_dssp EE--
T ss_pred ehhc
Confidence 8874
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.49 E-value=1.5 Score=46.44 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL 572 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~ 572 (707)
..+|.|..+ ..+++|. . .+.++....+..- ..+ ...+....+....++..++++..|.|..= ...++.
T Consensus 64 l~~I~f~~~-~g~ivG~-~----g~ll~T~DgG~tW-~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~t 135 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVGE-P----GLLLHTTDGGKTW-ERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKT 135 (302)
T ss_dssp EEEEEEETT-EEEEEEE-T----TEEEEESSTTSS--EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSS
T ss_pred EEEEEecCC-ceEEEcC-C----ceEEEecCCCCCc-EEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCC
Confidence 456777543 3444443 2 3556666666544 222 22344445554444443444334443321 222322
Q ss_pred E-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 573 I-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 573 ~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
- .......+.+..+..+++|.++++++....+.-||--. ...... +.-...|.++.|+|++.+.+.+ ..|.|++=
T Consensus 136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 2 22334446688888999999999887665566777542 222222 2246789999999998876655 77877776
Q ss_pred ecccccCCCCCCcccceEEeeCCC---CCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHT---SSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~---~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
+... + ...+..+. ...+.++.+++|.+++...++|+. |++
T Consensus 213 ~~~~--~---------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l 255 (302)
T PF14870_consen 213 DDPD--D---------GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL 255 (302)
T ss_dssp E-TT--E---------EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E
T ss_pred cCCC--C---------ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE
Confidence 4110 0 11111110 112345999999999877776654 444
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.48 E-value=0.15 Score=52.62 Aligned_cols=154 Identities=14% Similarity=0.038 Sum_probs=90.5
Q ss_pred CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE-CCCCCcceE
Q 005235 541 LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD-MDLSSKPYR 617 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD-l~~~~~~~~ 617 (707)
.+.++++++++..+++.. ++.-.+|-...+.....+... ..++.-.|+++|...++...+....++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g-~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG-GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC-CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999999877655 444444444443333333222 3688889999988887777666666663 222221111
Q ss_pred EeecC-C-CCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 618 VLKCH-P-KDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 618 ~l~~h-~-~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
.+... . ..|+++.+||||..+|... .++.|.|=-+.-..+-....+..++......... +.+++|.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~----v~~v~W~~~~~L 179 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD----VTDVAWSDDSTL 179 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc----ceeeeecCCCEE
Confidence 22211 1 2799999999999777655 3456665533211111111222333333332333 999999999987
Q ss_pred EEEEeCC
Q 005235 693 LFTAGAD 699 (707)
Q Consensus 693 L~s~g~D 699 (707)
++.+...
T Consensus 180 ~V~~~~~ 186 (253)
T PF10647_consen 180 VVLGRSA 186 (253)
T ss_pred EEEeCCC
Confidence 7666543
No 378
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.36 E-value=0.25 Score=54.34 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=96.1
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.++|++++.|.=| .++++..+|.+.|.|++........+... ..........
T Consensus 86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~--------------------------~~~~~~~~~~ 137 (395)
T PF08596_consen 86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------------SFLSKSSSSY 137 (395)
T ss_dssp S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------T-SS----
T ss_pred CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc--------------------------cccccccccC
Confidence 7899999999888 45555568999999985542211111100 0000112234
Q ss_pred eEEEEEcC-----CC---CEEEEEeCCCCccEEEEEECCC---Cceeeeee-----ccCCCeEEEE-EeCC---------
Q 005235 497 VSSVEWHR-----RG---DYLSTVMPAGESRAIFMHQLSK---KLSHRIPF-----KLHGLPVSSV-FHPT--------- 550 (707)
Q Consensus 497 V~~v~~sp-----~g---~~lat~s~dg~~~~V~Iwdl~~---~~~~~~~~-----~~~~~V~~v~-fspd--------- 550 (707)
|+++.|+- ++ -.+++|...| .+.+|.+.- +... ..+ .+.+.|..+. |+.+
T Consensus 138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G---~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 138 VTSIEFSVMTLGGDGYSSICLLVGTNSG---NVLTFKILPSSNGRFS-VQFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp EEEEEEEEEE-TTSSSEEEEEEEEETTS---EEEEEEEEE-GGG-EE-EEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred eeEEEEEEEecCCCcccceEEEEEeCCC---CEEEEEEecCCCCceE-EEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 44555531 22 2455555555 666665531 1111 111 2334444433 2211
Q ss_pred ------------CCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEE-----cCCCCEEEEEECCCcEEEEECCCCC
Q 005235 551 ------------RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAI-----HPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 551 ------------~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~-----spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
..+++++++..+|++.+.+.+...+.....-...++.+ ...+..|++-..+|.|++|.+-.-
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L- 292 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL- 292 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-
Confidence 12566777999999999988777665522122333444 235677888899999999999755
Q ss_pred cceEEeecCC----CCEEEEEEcCCCCEEEEEeCC
Q 005235 614 KPYRVLKCHP----KDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 614 ~~~~~l~~h~----~~I~~vafspdg~llaSgs~D 644 (707)
+.+..+.... ..+....|+++|..|+-.+..
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred hHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 5666665432 234456778889877766543
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.014 Score=65.00 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=74.2
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE-EEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV-SSVFHPTRSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~-~v~fspd~~~l~v~s-dg~I~iwDl~~ 569 (707)
....|.-+.|+|.-+.+|++..+| .|.++.++ .+.. .++ -+...++ +++|.|||++|++|- ||+|++.|..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~g---elli~R~n-~qRl-wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKG---ELLIHRLN-WQRL-WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCC---cEEEEEec-ccee-EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 355688899999999999999988 99999998 4433 556 3555555 999999999999998 99999999999
Q ss_pred CeEEEEE-eCCCCCeEEEEEcC
Q 005235 570 QRLIKKL-ETGLKEVSSIAIHP 590 (707)
Q Consensus 570 ~~~~~~l-~~~~~~I~sl~~sp 590 (707)
+..+... ..-...|+++-|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 8777652 22335688888864
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.1 Score=57.37 Aligned_cols=150 Identities=12% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCcE-EEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCc------cEEEEEeCCeEEEEECCCCCchhcccc
Q 005235 386 VACYL-EYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPEL------PVLAVSVGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 386 ~~~~~-l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~------~lla~s~d~~V~lwd~~~~~~~~~~~~ 458 (707)
.+.++ +.+|.....|+--|+++|+.+..|.....|+-+.+.|+... .-+.+-.++.|.-||+.....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------ 416 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------ 416 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence 34444 44566667789999999999999999777999999987632 234455566777777653211
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K 537 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~ 537 (707)
.+..|.-. ..........|.+-..+ .++|+|+.+| .|++||-...+.. ..| +
T Consensus 417 -----------------~kl~~~q~-----kqy~~k~nFsc~aTT~s-G~IvvgS~~G---dIRLYdri~~~AK-TAlPg 469 (644)
T KOG2395|consen 417 -----------------NKLAVVQS-----KQYSTKNNFSCFATTES-GYIVVGSLKG---DIRLYDRIGRRAK-TALPG 469 (644)
T ss_pred -----------------ceeeeeec-----cccccccccceeeecCC-ceEEEeecCC---cEEeehhhhhhhh-hcccc
Confidence 11122100 00011223344444434 4899999998 9999998444333 556 7
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCeEEEEECC
Q 005235 538 LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLL 568 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~ 568 (707)
...+|..|..+.+|++|++.++.++.+.++.
T Consensus 470 LG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 8889999999999999999999999988864
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.26 E-value=0.29 Score=54.78 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC----C-CEEEEEeCCeEEEEECC
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT----R-SIFFVSTKKNIRVYDLL 568 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd----~-~~l~v~sdg~I~iwDl~ 568 (707)
-.++..++|. ||+.++-..---.++.+++-| . ..++.-..|..+.|.|- . .+||+-....|.||-+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s--~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----S--KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC-----c--cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578889997 666555433100000221111 1 22344567899999985 2 46777779999999986
Q ss_pred C-----CeEEEEEeCCCC---C--eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE
Q 005235 569 K-----QRLIKKLETGLK---E--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 569 ~-----~~~~~~l~~~~~---~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll 638 (707)
. ++.+..-..+-+ + ...+.|||....|++-.....-.++++...+..++.=-...+-|.|.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2 333332222111 1 24578999999998887776667777776555555433456789999999999966
Q ss_pred EEEeC-CCcEEEEe
Q 005235 639 ASCSD-DCTAYVFH 651 (707)
Q Consensus 639 aSgs~-Dg~I~Vwd 651 (707)
+.+-. .=.-+|||
T Consensus 171 VVAvGSsLHSyiWd 184 (671)
T PF15390_consen 171 VVAVGSSLHSYIWD 184 (671)
T ss_pred EEEeCCeEEEEEec
Confidence 65532 33467885
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.05 E-value=0.35 Score=42.83 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235 583 VSSIAIHP---AG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL 658 (707)
Q Consensus 583 I~sl~~sp---dg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl 658 (707)
|++|++.. +| +.|++||.|..|++|+-+ ..+..+.- ...|++++-... ..|+.+..+|+|-||+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-----
Confidence 55665543 33 689999999999999865 45666653 456777776665 579999999999999532
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcC-CC---CEEEEEeCCCcEE
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQ---PWLFTAGADSVIR 703 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg---~~L~s~g~Dg~Ir 703 (707)
.. +-..+.-.. +.++++.. ++ +-|++|-.+|.|-
T Consensus 72 --~R----lWRiKSK~~-----~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 --QR----LWRIKSKNQ-----VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --ce----eeeeccCCC-----eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11 222222211 56665543 32 3688888888874
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.0086 Score=59.13 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=81.8
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE-EEEE
Q 005235 553 IFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSS-IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI-TNVA 630 (707)
Q Consensus 553 ~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I-~~va 630 (707)
+++++.++.|+-++++..+....-. ..+.+ ..+---+..|++|+.+|.|.+|..............-...| ..|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse---~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE---RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh---hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3444558899888887643221111 11111 12222357899999999999998863322111111112222 2233
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC-CCCCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeC
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT-SSNGRGVMDCKFHPRQPWLFTA--GADSVIRLYCH 707 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~-~~~~~gV~~l~fspdg~~L~s~--g~Dg~IrlWdl 707 (707)
--.++.+.++++.||.|+.|++. .+.. +.....|. .. +..+..+..+.+|+++ |.|..++.|++
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~------p~k~---~g~~g~h~~~~----~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIK------PNKV---LGYVGQHNFES----GEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cccccceeEEeccCCceeeeccc------cCce---eeeeccccCCC----cceeEEecCCceEEeeccccchhhhhcch
Confidence 33455688899999999999653 2222 34445555 33 5666666677788888 88888888875
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.3 Score=53.80 Aligned_cols=134 Identities=10% Similarity=0.225 Sum_probs=91.8
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-------EEEEEECCCcEEEEECCCCCc-ceEEe
Q 005235 550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-------NLIVGSREGKLCWFDMDLSSK-PYRVL 619 (707)
Q Consensus 550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-------~L~sGs~Dg~I~vwDl~~~~~-~~~~l 619 (707)
+..+|+... ...|+-.|+..|+.+.....+.. |+-+.+.|++. .-++|-.+..|+-||++-.+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444555433 67899999999999999888755 88888988763 235677889999999986543 23333
Q ss_pred ecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 620 KCHP----KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 620 ~~h~----~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
++|. ....|.+-..+| ++|.||.+|-|++|+- +.... -..|.|-... |..|..+.+|+||+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-----i~~~A----KTAlPgLG~~----I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-----IGRRA----KTALPGLGDA----IKHVDVTADGKWILA 488 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-----hhhhh----hhcccccCCc----eeeEEeeccCcEEEE
Confidence 3332 223444444444 7899999999999963 11111 2235555555 999999999999977
Q ss_pred EeC
Q 005235 696 AGA 698 (707)
Q Consensus 696 ~g~ 698 (707)
.+.
T Consensus 489 Tc~ 491 (644)
T KOG2395|consen 489 TCK 491 (644)
T ss_pred ecc
Confidence 664
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.023 Score=66.83 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=75.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235 591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670 (707)
Q Consensus 591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l 670 (707)
.+..+++|+..|.+..+|+...-.+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+ ..++. ++.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~------~~~k~---l~~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM------HRAKI---LKVI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc------cCCcc---eeee
Confidence 45679999999999999997542332222233578999999999999999999999999954 44443 5555
Q ss_pred eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 671 ~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.-|..+ ..||..+.|..++..++++..-|. +|.
T Consensus 169 ~e~~ap-~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 169 TEHGAP-VTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eecCCc-cceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 555443 234777777777777888877776 554
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.89 E-value=2 Score=50.93 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCCeEEEEEeCC---CCEEEEEe-CCeEEEEECCC
Q 005235 539 HGLPVSSVFHPT---RSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 539 ~~~V~~v~fspd---~~~l~v~s-dg~I~iwDl~~ 569 (707)
...|..+.|||. +..|++-+ |+++|+||+..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 345677788875 35666654 88888888765
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.81 E-value=0.56 Score=41.51 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=66.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE
Q 005235 497 VSSVEWHR---RG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL 572 (707)
Q Consensus 497 V~~v~~sp---~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~ 572 (707)
|+++++.. +| +.|++|+.|. .|+||+-. ... ..+...+.|++++-...+.+.+.-.+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~---~IRvf~~~--e~~-~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDF---EIRVFKGD--EIV-AEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCc---EEEEEeCC--cEE-EEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cce
Confidence 55666544 33 5899999988 99999854 333 5556677888888877755444444899999985 334
Q ss_pred EEEEeCCCCCeEEEEE-cCCC---CEEEEEECCCcEE
Q 005235 573 IKKLETGLKEVSSIAI-HPAG---DNLIVGSREGKLC 605 (707)
Q Consensus 573 ~~~l~~~~~~I~sl~~-spdg---~~L~sGs~Dg~I~ 605 (707)
+..++.... +.++++ ..+| .-|++|-.+|+|-
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 445554434 555544 3333 4789999999874
No 388
>PRK10115 protease 2; Provisional
Probab=95.75 E-value=3.7 Score=48.79 Aligned_cols=197 Identities=8% Similarity=0.014 Sum_probs=104.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYD 566 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwD 566 (707)
.+..+.|+|+|++|+.+...+++ ..|.+.|+.++......+... -..++|++++..|+.+. + ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 45678899999999887655433 468888998775331233221 15699999998777654 2 3688889
Q ss_pred CCCC--eEEEEEeCCCCCeE-EEEEcCCCCEEEEEECC---CcEEEEECCCC-CcceEEeecCCCCEEEEEEcCCCCEEE
Q 005235 567 LLKQ--RLIKKLETGLKEVS-SIAIHPAGDNLIVGSRE---GKLCWFDMDLS-SKPYRVLKCHPKDITNVAFHRSYPLFA 639 (707)
Q Consensus 567 l~~~--~~~~~l~~~~~~I~-sl~~spdg~~L~sGs~D---g~I~vwDl~~~-~~~~~~l~~h~~~I~~vafspdg~lla 639 (707)
+.++ +....+........ ++..+.++.++++.+.. +.+.+++.... ..+...+..-......+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 9887 33334443333333 33445588877665443 46888886432 122222222223333332 33333333
Q ss_pred EEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 640 SCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 640 Sgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
.... ...-+|..+ ++..... ...+..+.. ...|..+.++ ...++++...+|.-+++
T Consensus 285 ~tn~~~~~~~l~~~----~~~~~~~---~~~l~~~~~--~~~i~~~~~~-~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 285 RSNRHGKNFGLYRT----RVRDEQQ---WEELIPPRE--NIMLEGFTLF-TDWLVVEERQRGLTSLR 341 (686)
T ss_pred EEcCCCCCceEEEe----cCCCccc---CeEEECCCC--CCEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 3322 224444433 2221111 233334421 1127777776 33455666667765554
No 389
>PRK10115 protease 2; Provisional
Probab=95.71 E-value=6.4 Score=46.81 Aligned_cols=151 Identities=9% Similarity=0.007 Sum_probs=83.2
Q ss_pred EEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceee-eee-ccCCCeE-EEEEeCCCCEEEEEe----CCeEEEEEC
Q 005235 498 SSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPF-KLHGLPV-SSVFHPTRSIFFVST----KKNIRVYDL 567 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~-~v~fspd~~~l~v~s----dg~I~iwDl 567 (707)
..++|+++++.|+.+..+. ....|..|++.+..... ..+ ....... .+..+.++.++++.+ ++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 4589999998777665532 23588899998884321 334 3333333 333344788776643 467999995
Q ss_pred C--CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEE
Q 005235 568 L--KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFA 639 (707)
Q Consensus 568 ~--~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~lla 639 (707)
. ++.....+.........+. +.. ..|..-+.. ..|...++... .....+..+. ..|..+.++ ...+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVV 330 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEE
Confidence 3 3433222322223333332 333 444443332 23444455422 2234555552 368888887 345777
Q ss_pred EEeCCCcEEEEec
Q 005235 640 SCSDDCTAYVFHG 652 (707)
Q Consensus 640 Sgs~Dg~I~Vwd~ 652 (707)
+...+|.-+++-+
T Consensus 331 ~~~~~g~~~l~~~ 343 (686)
T PRK10115 331 EERQRGLTSLRQI 343 (686)
T ss_pred EEEeCCEEEEEEE
Confidence 7778887777643
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.63 E-value=0.73 Score=47.58 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE-CCCCeEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYD-LLKQRLI 573 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD-l~~~~~~ 573 (707)
.+.+.+++++|..+|..........+.++...... ..+.....+....|++++...++.. +...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 68899999999988887722223477776654332 2222334778889999987777665 55566663 3333221
Q ss_pred -EEEeC-CC-CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCC--C------cceEEeecCCCCEEEEEEcCCCCEEE
Q 005235 574 -KKLET-GL-KEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLS--S------KPYRVLKCHPKDITNVAFHRSYPLFA 639 (707)
Q Consensus 574 -~~l~~-~~-~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~--~------~~~~~l~~h~~~I~~vafspdg~lla 639 (707)
..+.. .. ..|+++.+||||..++.-. .++.|.+--+... . .++.........+++++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11221 11 2799999999999887765 3467776654321 1 22233333356799999999999877
Q ss_pred EEeCCC
Q 005235 640 SCSDDC 645 (707)
Q Consensus 640 Sgs~Dg 645 (707)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 766544
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.58 E-value=2.2 Score=45.20 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=78.3
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCeE-EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 537 KLHGLPVSSVFHPTRSIFFVSTKKNI-RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~sdg~I-~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
...+.+..+..+++|.+++++..|.+ .-||--...-...-......|.+|.|.|++.+.+++ ..|.|+.=+.......
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 66678899999999999999986655 466654322222222345789999999998776655 7888888772211111
Q ss_pred eE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 616 YR----VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 616 ~~----~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
.. .+..-.-.+..++|.++..++|+|+ .|++.+= ...+...........-... +..+.|.+. .
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S-------~DgGktW~~~~~~~~~~~n----~~~i~f~~~-~ 287 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS-------TDGGKTWQKDRVGENVPSN----LYRIVFVNP-D 287 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE-------SSTTSS-EE-GGGTTSSS-------EEEEEET-T
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe-------CCCCccceECccccCCCCc----eEEEEEcCC-C
Confidence 11 1111223488999999988888765 4544442 1122221111111111112 778888755 4
Q ss_pred EEEEEeCCCcEEEE
Q 005235 692 WLFTAGADSVIRLY 705 (707)
Q Consensus 692 ~L~s~g~Dg~IrlW 705 (707)
.-+..|.+|.|.-|
T Consensus 288 ~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE-STTEEEEE
T ss_pred ceEEECCCcEEEEe
Confidence 56666778988766
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.51 E-value=3.7 Score=45.06 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=90.6
Q ss_pred EEEEEeCCCcEEEEeCCC----CeEEEEEec--------CCcEEEEEEccCCCccEEEEEeC------CeEEEEECCCCC
Q 005235 390 LEYKGSTDGTVRIWEVES----GRCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVG------QDVLILNTGLGN 451 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~t----g~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d------~~V~lwd~~~~~ 451 (707)
+++-|=..+.|.|.|+.+ -+..++++. -.....+.--|+|+ .++++-.+ |.+.++|-++.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf- 167 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETF- 167 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccc-
Confidence 444444778899999884 456666664 12333444456773 33333221 23455553332
Q ss_pred chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------------
Q 005235 452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG--------------- 516 (707)
Q Consensus 452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg--------------- 516 (707)
.....|..... ...--..+-|.|..+.++|.....
T Consensus 168 -----------------------~v~g~We~~~~-------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 168 -----------------------EVKGRWEKDRG-------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp ------------------------EEEE--SB-T-------T------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred -----------------------cccceeccCCC-------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 12234433211 122335667778777777765422
Q ss_pred --CccEEEEEECCCCceeeeee--ccCC-CeEEEEEe--CCCCEEEEEe--CCeEEEEEC-CCCe----EEEEEeCC---
Q 005235 517 --ESRAIFMHQLSKKLSHRIPF--KLHG-LPVSSVFH--PTRSIFFVST--KKNIRVYDL-LKQR----LIKKLETG--- 579 (707)
Q Consensus 517 --~~~~V~Iwdl~~~~~~~~~~--~~~~-~V~~v~fs--pd~~~l~v~s--dg~I~iwDl-~~~~----~~~~l~~~--- 579 (707)
..+++.+||+.+++.. +.+ +..+ .+..|.|. |+..+-++++ ..+|..|-- ..++ .+-.+...
T Consensus 218 ~~yG~~l~vWD~~~r~~~-Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLL-QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp H-S--EEEEEETTTTEEE-EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccccCeEEEEECCCCcEe-eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 2469999999999988 777 3333 45567774 5566766655 555555543 4442 22222110
Q ss_pred --------------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceE
Q 005235 580 --------------LKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 580 --------------~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~ 617 (707)
..-|+.|.+|.|.++|.+.+ ..|.|+-||+.....|..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 13478999999999997765 589999999987655543
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.45 E-value=0.45 Score=55.11 Aligned_cols=220 Identities=12% Similarity=0.102 Sum_probs=113.6
Q ss_pred CCCCcEEEEEeCCC------cEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeC-C-----eEEEEECCCC
Q 005235 385 PVACYLEYKGSTDG------TVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVG-Q-----DVLILNTGLG 450 (707)
Q Consensus 385 p~~~~~l~sgs~Dg------tVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d-~-----~V~lwd~~~~ 450 (707)
+....+++.||.++ +|..+|..++.-...... .....+++...+. .+++||.+ + ++..||+.+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~--lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK--LYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCE--EEEEccccCCCcccceEEEecCCCC
Confidence 44556777787773 677888887743322222 3344555665553 55566666 2 3445554332
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCC
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSK 528 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~ 528 (707)
.|..-.... ...+...+.. -+|...|+|+.||. ..+|-.||..+
T Consensus 360 ----------------------------~W~~~a~M~--~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 360 ----------------------------QWTPVAPMN--TKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ----------------------------ceeccCCcc--CccccceeEE----ECCEEEEEeccccccccccEEEecCCC
Confidence 142210000 0011111111 16788888888872 34788888877
Q ss_pred Cceeeeee-ccCCCeEEEEE-eCCCCEEEEEe-C------CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235 529 KLSHRIPF-KLHGLPVSSVF-HPTRSIFFVST-K------KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 529 ~~~~~~~~-~~~~~V~~v~f-spd~~~l~v~s-d------g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~s 597 (707)
.... .. .......+.+. .-+|.+.++|+ + .+|..||..+++- +..+...........+ ++...++
T Consensus 406 ~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvv 481 (571)
T KOG4441|consen 406 NKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVV 481 (571)
T ss_pred Cccc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEE
Confidence 6653 22 12112222222 22455555554 3 4688999887743 2223222222222222 5778888
Q ss_pred EECCCc-----EEEEECCCCCcceEEee---cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 598 GSREGK-----LCWFDMDLSSKPYRVLK---CHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 598 Gs~Dg~-----I~vwDl~~~~~~~~~l~---~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
|+.|+. |..||..+.. ...+. .....+..+++ ++.+.+.|+.||.-.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNN 536 (571)
T ss_pred CCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEE--CCEEEEEecccCccc
Confidence 888873 6778887642 22222 22222222222 567888888877433
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.43 E-value=0.41 Score=55.26 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=85.5
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH--RSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs--pdg~llaSgs~Dg~I~Vwd 651 (707)
.++..+...++-+.-+.-+...++.+....+.|||...+.-.+..--.....|.++.|. |+++.+.+.|-...|.++-
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 44555555666666666666666665666799999987632222222346789999885 6888888888899999996
Q ss_pred cccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 652 GMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
-.-++-....|...+++.+ ..|+.. .|.+..|.++|..++.+| +.+.|++
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h---~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPH---PIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCC---CccceeEecCCeEEEEeC--CEEEEEC
Confidence 5444444556666666655 344422 389999999998776665 3566654
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=1.4 Score=45.35 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=73.8
Q ss_pred CCCeEEEEEeCCCCE-EEEEe--CCeEEEEECCCCeEEEEEeCCCCC--eEEEEEcCCCCEEEEEEC-----CCcEEEEE
Q 005235 539 HGLPVSSVFHPTRSI-FFVST--KKNIRVYDLLKQRLIKKLETGLKE--VSSIAIHPAGDNLIVGSR-----EGKLCWFD 608 (707)
Q Consensus 539 ~~~V~~v~fspd~~~-l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~-----Dg~I~vwD 608 (707)
......++|||..+. ++.+- .....++|....+...++....+. --.=.|||+|.+|...-. .|.|-|||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 344556889997665 44444 356788999887655555432221 122369999999987643 36799999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
.+..-..+..+..|.-.-..+.+.+||++|+.+.
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 9876666777888887888999999999988764
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.076 Score=62.74 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235 551 RSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 551 ~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
+..+++|+ .|.|-..|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++++.+..|..+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccce
Confidence 44577777 588988887653 111222234478999999999999999999999999999976 788989888877766
Q ss_pred EEEc---CCCCEEEEEeCCCcEEEEec
Q 005235 629 VAFH---RSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 629 vafs---pdg~llaSgs~Dg~I~Vwd~ 652 (707)
+-++ .++..+.++..-|. +|..
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6554 34556777766665 5543
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=3 Score=43.26 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=100.4
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
.+....+.+++|+|+.+.|+++.... .-.|+=-..+... ..+ ..-...-.+.+..++.+.++-- ++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p---~~iVElt~~Gdli-rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKP---AAIVELTKEGDLI-RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCC---ceEEEEecCCceE-EEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 34556699999999999888887655 4445544445544 433 4445566778877776666655 788888877
Q ss_pred CCCeEEEE-------Ee---CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce--EEeecCC-------CCEEE
Q 005235 568 LKQRLIKK-------LE---TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY--RVLKCHP-------KDITN 628 (707)
Q Consensus 568 ~~~~~~~~-------l~---~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~--~~l~~h~-------~~I~~ 628 (707)
..+..+.. |. ......-.++|+|....|+++-.-.-+.||.+..+...+ .....++ ..|.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 65522211 11 114557889999999999999888888887765332111 1111222 34678
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEE
Q 005235 629 VAFHRS-YPLFASCSDDCTAYVF 650 (707)
Q Consensus 629 vafspd-g~llaSgs~Dg~I~Vw 650 (707)
+.|++. +.+|+-+.+++.+.-.
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEE
Confidence 889874 5566666677777776
No 398
>PRK13684 Ycf48-like protein; Provisional
Probab=95.02 E-value=6.3 Score=42.48 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=87.5
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
...+.+.++.+.|++.+++++..|.+..-.-..++.-..+. .....++++.+.+++..+++|. .|.+.+=..+.+ ..
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~s 247 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ES 247 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-Cc
Confidence 44567889999999988888877766542112222222222 3345689999999998887764 466543223333 22
Q ss_pred eEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 616 YRVLKCH----PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 616 ~~~l~~h----~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
......+ ...+.+++|++++.+++++ .+|.|..= ...+.....+....+-... ...+.|..++.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S-------~d~G~tW~~~~~~~~~~~~----~~~~~~~~~~~ 315 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVS-------KDGGKTWEKDPVGEEVPSN----FYKIVFLDPEK 315 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEe-------CCCCCCCeECCcCCCCCcc----eEEEEEeCCCc
Confidence 2222111 2357889999988766554 56755432 1112221111110111112 77888887766
Q ss_pred EEEEEeCCCcEEEEe
Q 005235 692 WLFTAGADSVIRLYC 706 (707)
Q Consensus 692 ~L~s~g~Dg~IrlWd 706 (707)
.+ .+|..|.|.-|+
T Consensus 316 ~~-~~G~~G~il~~~ 329 (334)
T PRK13684 316 GF-VLGQRGVLLRYV 329 (334)
T ss_pred eE-EECCCceEEEec
Confidence 54 466678887654
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.74 E-value=1.1 Score=49.06 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--------CC-ccEEEEEECCC--Cce-eeeee-ccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPA--------GE-SRAIFMHQLSK--KLS-HRIPF-KLHGLPVSSVFHPTRSIFFVSTKKN 561 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~d--------g~-~~~V~Iwdl~~--~~~-~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~ 561 (707)
.....|+|.++|+.+++-..+ .. ...|.+++-.. +.. ....| ........++|.+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 456789999999988775421 01 11566665432 221 11345 445567899999998 55555444
Q ss_pred EEEE-ECCC-------Ce-EEEEEeCC----CCCeEEEEEcCCCCEEEEEEC-------------------CCcEEEEEC
Q 005235 562 IRVY-DLLK-------QR-LIKKLETG----LKEVSSIAIHPAGDNLIVGSR-------------------EGKLCWFDM 609 (707)
Q Consensus 562 I~iw-Dl~~-------~~-~~~~l~~~----~~~I~sl~~spdg~~L~sGs~-------------------Dg~I~vwDl 609 (707)
|..| |... .+ ++..+... ......++|.|+|.+.++-+. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 5544 5431 11 22223221 234778999999987665431 144666666
Q ss_pred CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
+.+ .+..+...-.....++|+++|.++++-..+
T Consensus 172 dg~--~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGG--KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCC--eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 543 233443333445789999999988775543
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.62 E-value=8.8 Score=42.25 Aligned_cols=188 Identities=12% Similarity=0.135 Sum_probs=86.7
Q ss_pred cCCCCEEEEEeCC--C-CccEEEEEECCCCceeeeee-c---cCCCeEEEEEeCCCCEEEEEe-----------------
Q 005235 503 HRRGDYLSTVMPA--G-ESRAIFMHQLSKKLSHRIPF-K---LHGLPVSSVFHPTRSIFFVST----------------- 558 (707)
Q Consensus 503 sp~g~~lat~s~d--g-~~~~V~Iwdl~~~~~~~~~~-~---~~~~V~~v~fspd~~~l~v~s----------------- 558 (707)
-|+|..++++-.+ | ..+.+.+.|-.+.... ... . ....-..+-++|..+.++++.
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~-g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVK-GRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EE-EE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCcccccc-ceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 4688877776432 2 3457788887766554 333 1 123345677888888777642
Q ss_pred ----CCeEEEEECCCCeEEEEEeCCCCC--eEEEEE--cCCCCEEEEEEC-CCcEEEEEC-CCCC---cceEEee-----
Q 005235 559 ----KKNIRVYDLLKQRLIKKLETGLKE--VSSIAI--HPAGDNLIVGSR-EGKLCWFDM-DLSS---KPYRVLK----- 620 (707)
Q Consensus 559 ----dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~--spdg~~L~sGs~-Dg~I~vwDl-~~~~---~~~~~l~----- 620 (707)
..++.+||+.+.+.++++.-+... ...|.| .|+..+=++|+. ..+|..|-- +.+. +.+-.+.
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 247999999999999999876433 455666 455555555443 334443332 3221 0111111
Q ss_pred ------------cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEee-CCC-------C----
Q 005235 621 ------------CHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHT-------S---- 675 (707)
Q Consensus 621 ------------~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~-------~---- 675 (707)
.-..-|+.+..|.|.++|..+ =.+|.|+.||+. |...-.+ +..+. |.. .
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS---DP~~Pkl---~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS---DPFNPKL---VGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S---STTS-EE---EEEEE-BTTTT-B--TTS---
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC---CCCCCcE---EeEEEECcEeccCCCcccccc
Confidence 012457999999999976654 478999999876 3222221 22111 110 0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g 697 (707)
.-..|..-+..|-||+.|+..+
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---S----EEE-TTSSEEEEE-
T ss_pred ccCCCCCeEEEccCCeEEEEEe
Confidence 0012356788888998885543
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.57 E-value=4.3 Score=40.72 Aligned_cols=102 Identities=8% Similarity=0.084 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEE--CCCCceee----eee-c----cCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ--LSKKLSHR----IPF-K----LHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd--l~~~~~~~----~~~-~----~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.--+.++|+.+.+.|...... +-.|.-|| +.++.... ..+ + ..-..-.++...+|.+.++.- .++|
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred cCCccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 334678888777766554432 23676676 44443220 111 1 011222445555676655554 7999
Q ss_pred EEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEE
Q 005235 563 RVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVG 598 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sG 598 (707)
...|+.+|+.+..+.-....|+|++|-- +-+.|.+.
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 9999999999999998888999999952 22444443
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.56 E-value=1 Score=49.28 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=59.6
Q ss_pred CCeEEEEEeCCCCEEEEEe------------CC-eEEEEECCC--Ce--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235 540 GLPVSSVFHPTRSIFFVST------------KK-NIRVYDLLK--QR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s------------dg-~I~iwDl~~--~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg 602 (707)
.....++|.++|.++++.. .+ .|.+++-.. ++ ....+.........|++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999777642 12 677776443 32 233444444567889999998 44444443
Q ss_pred cEEEEECCCCC----c---ceEEeec----CCCCEEEEEEcCCCCEEEEEe
Q 005235 603 KLCWFDMDLSS----K---PYRVLKC----HPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 603 ~I~vwDl~~~~----~---~~~~l~~----h~~~I~~vafspdg~llaSgs 642 (707)
.+++.|..... + .+..+.. +......++|.|+|.+.++.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33344543211 1 1222322 234477899999999777655
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.55 E-value=6.5 Score=40.50 Aligned_cols=189 Identities=9% Similarity=0.030 Sum_probs=103.3
Q ss_pred eEEEEEec--CCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235 409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD 484 (707)
Q Consensus 409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~ 484 (707)
+.+.++.+ ......+.|..++ ..+-+++.-| .|+.+++.++.... .-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~------------------------~~~l~~ 88 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ------------------------SVPLPP 88 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE------------------------EEE-TT
T ss_pred EEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE------------------------EEECCc
Confidence 45667777 5566788997777 2334444434 68888877763211 111111
Q ss_pred ccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 485 KLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 485 ~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
...+. +.-+.+.+..++| .++ ...+||..+-+.. ..|...+.-..++ .++..|+.+. ...|
T Consensus 89 ~~FgEGit~~~d~l~qLTW-----------k~~---~~f~yd~~tl~~~-~~~~y~~EGWGLt--~dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 89 RYFGEGITILGDKLYQLTW-----------KEG---TGFVYDPNTLKKI-GTFPYPGEGWGLT--SDGKRLIMSDGSSRL 151 (264)
T ss_dssp T--EEEEEEETTEEEEEES-----------SSS---EEEEEETTTTEEE-EEEE-SSS--EEE--ECSSCEEEE-SSSEE
T ss_pred cccceeEEEECCEEEEEEe-----------cCC---eEEEEccccceEE-EEEecCCcceEEE--cCCCEEEEECCccce
Confidence 11111 1122333444444 233 8899999988776 6774445555666 4455666655 6889
Q ss_pred EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---------------cC
Q 005235 563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---------------CH 622 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---------------~h 622 (707)
+++|..+.+..+++.... ..++-|.|- +|...|=.=....|...|..++ .....+. ..
T Consensus 152 ~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPD 229 (264)
T ss_dssp EEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--T
T ss_pred EEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhccccccccccc
Confidence 999998877766665321 236667775 5655554545566777787776 4444332 01
Q ss_pred CCCEEEEEEcCCCC-EEEEE
Q 005235 623 PKDITNVAFHRSYP-LFASC 641 (707)
Q Consensus 623 ~~~I~~vafspdg~-llaSg 641 (707)
..-.+.+||.|... +++||
T Consensus 230 ~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEe
Confidence 34589999998766 55555
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.45 E-value=1.5 Score=51.13 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=91.1
Q ss_pred CCEEEEEeCCeEEEEECCCCeEE------EEEeC----------------CCCCeEEEEEcC--CCCEEEEEECCCcEEE
Q 005235 551 RSIFFVSTKKNIRVYDLLKQRLI------KKLET----------------GLKEVSSIAIHP--AGDNLIVGSREGKLCW 606 (707)
Q Consensus 551 ~~~l~v~sdg~I~iwDl~~~~~~------~~l~~----------------~~~~I~sl~~sp--dg~~L~sGs~Dg~I~v 606 (707)
..++++|.++.|.||++..-... ..+.. ....|+-|.+.. +...|+++..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 77888888999999998642111 11100 001244554432 3467889999999999
Q ss_pred EECCC-------C------------CcceEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEecccccCCCCCCccc
Q 005235 607 FDMDL-------S------------SKPYRVLKCHPKDITNVAFH--RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665 (707)
Q Consensus 607 wDl~~-------~------------~~~~~~l~~h~~~I~~vafs--pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~ 665 (707)
|.+.. . -+|...+. -...++++++| ...++||+++....|.||-.... .+.....
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~---~~r~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV---DERFYHV 204 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecc---ccccccc
Confidence 96631 0 01333333 24578999999 88889999999888888854321 1111111
Q ss_pred ceEEeeCCCCCCCCCeeEEEEcCCC---C---EEEEEeCCCcEEEEeC
Q 005235 666 PLEILRGHTSSNGRGVMDCKFHPRQ---P---WLFTAGADSVIRLYCH 707 (707)
Q Consensus 666 pl~~l~gh~~~~~~gV~~l~fspdg---~---~L~s~g~Dg~IrlWdl 707 (707)
+ ..-..|. |-+|+|-++. . +|++++-.|.+.+|++
T Consensus 205 ~-s~~~~hN------IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 P-SHQHSHN------IPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred c-ccccccC------CCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 0112333 8889987654 2 7889999999988864
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.37 E-value=7.2 Score=40.21 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLI 573 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~ 573 (707)
...+.|..+|.++-+.+.-| ...|+.+|+.+++... ..+...---..++...+ .|+.-+ ++...+||..+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEE
Confidence 34677767888888888776 7799999999988651 22343434445666643 455544 899999999999888
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
.++.-. +.=..|+ .+|..|+......+|+++|..+-
T Consensus 124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred EEEecC-CcceEEE--cCCCEEEEECCccceEEECCccc
Confidence 888643 2334455 46778888777788999998765
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.22 E-value=3.3 Score=46.68 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=72.7
Q ss_pred eccCCCeEEEEEcCCC----CEEEEEeCCCCccEEEEEECCCCce-----ee---eee--ccCCCeEEEEEeCCCCEEEE
Q 005235 491 LRHFKMVSSVEWHRRG----DYLSTVMPAGESRAIFMHQLSKKLS-----HR---IPF--KLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g----~~lat~s~dg~~~~V~Iwdl~~~~~-----~~---~~~--~~~~~V~~v~fspd~~~l~v 556 (707)
++.-..|..++|.|-+ ..|+++.... .|.||++--... .. ..+ ...--.+.+.|||....|++
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkk---hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~V 129 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKK---HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTV 129 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccc---eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEE
Confidence 3555678999999853 2444555444 999999852211 10 111 11223467899999999999
Q ss_pred EeCCeE-EEEECCC-C-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEECC
Q 005235 557 STKKNI-RVYDLLK-Q-RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMD 610 (707)
Q Consensus 557 ~sdg~I-~iwDl~~-~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~ 610 (707)
-+...+ .++++.. + +....+ ...+.|.|.+|.+||..|+++-.. =.-++||-.
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 874333 4556553 2 333334 445789999999999988776433 235788754
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.20 E-value=10 Score=45.42 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE-------------EEEEeC--CCCEEEEEe-----------C
Q 005235 506 GDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV-------------SSVFHP--TRSIFFVST-----------K 559 (707)
Q Consensus 506 g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~-------------~v~fsp--d~~~l~v~s-----------d 559 (707)
+..++.++.|+ .|.-.|..+++.. ..|...+.|. .+.-.| .+..+++++ +
T Consensus 260 ~~rV~~~T~Dg---~LiALDA~TGk~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 260 ARRIILPTSDA---RLIALDADTGKLC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred CCEEEEecCCC---eEEEEECCCCCEE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence 45677777777 7888888888766 5553332221 011111 123455542 4
Q ss_pred CeEEEEECCCCeEEEEEeCCC-----------------CCe-EEEEEcCCCCEEEEEE------------------CCCc
Q 005235 560 KNIRVYDLLKQRLIKKLETGL-----------------KEV-SSIAIHPAGDNLIVGS------------------REGK 603 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~~-----------------~~I-~sl~~spdg~~L~sGs------------------~Dg~ 603 (707)
|.|+-||+.+|+++..+.... ..+ ..++++|....++.+. +.+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 789999999999988775320 001 2345555555555432 2345
Q ss_pred EEEEECCCCCcceEEeecCCCCEE---------EEEEcC-CCC---EEEEEeCCCcEEEEecc
Q 005235 604 LCWFDMDLSSKPYRVLKCHPKDIT---------NVAFHR-SYP---LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~h~~~I~---------~vafsp-dg~---llaSgs~Dg~I~Vwd~~ 653 (707)
|.-.|++++ +..-.++.....++ -+.+.. +|. .++.++.+|.+.++|..
T Consensus 416 lvALD~~TG-k~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 416 LVALDATTG-KERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred EEEEeCCCC-ceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 666677776 33333332111111 112222 553 88899999999999544
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.07 E-value=10 Score=40.81 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCC----------ccEEEEEECCCCce-----------eeeee-ccCCCeEEEEEeCC-
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGE----------SRAIFMHQLSKKLS-----------HRIPF-KLHGLPVSSVFHPT- 550 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~----------~~~V~Iwdl~~~~~-----------~~~~~-~~~~~V~~v~fspd- 550 (707)
......|+|.|+|.+.++.+..+. .+.|.-.+....-. ....+ ..-.....++|+|.
T Consensus 113 ~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~t 192 (331)
T PF07995_consen 113 NHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNT 192 (331)
T ss_dssp SS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTT
T ss_pred CCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCC
Confidence 344567999999987777765442 23444344332200 00122 22334568999998
Q ss_pred CCEEEEEe--CCeEEEEECCCC-----------------------------eEEEEEeCCCCCeEEEEEcC-------CC
Q 005235 551 RSIFFVST--KKNIRVYDLLKQ-----------------------------RLIKKLETGLKEVSSIAIHP-------AG 592 (707)
Q Consensus 551 ~~~l~v~s--dg~I~iwDl~~~-----------------------------~~~~~l~~~~~~I~sl~~sp-------dg 592 (707)
+.++++=. ++.=.|.-+..+ .++..+..| ..++.+.|.. .|
T Consensus 193 g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g 271 (331)
T PF07995_consen 193 GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRG 271 (331)
T ss_dssp TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTT
T ss_pred CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccC
Confidence 65554422 332222222221 123333333 5567777754 34
Q ss_pred CEEEEEECCCcEEEEECCCCCcceE--E-eecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKPYR--V-LKCHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~~~--~-l~~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
.+|++.-..+.|....++....... . +......+..|++.|||.++++-+.+|.|.
T Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4555555566788888765432221 1 223444799999999999998888888774
No 409
>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus
Probab=94.02 E-value=0.011 Score=59.73 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=53.5
Q ss_pred CCCCCCCccccccccCCcccccCCCCCCCCC-CCCCChH-HHHHHHHHHHHHHcCccccCCCCCccccccccccCCCc
Q 005235 198 HTDFDQYADYVDWFKYDDALHPLSNAPEPKR-RFIPSKW-ESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSS 273 (707)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~-~f~psk~-e~~~v~klv~~ir~g~~~~~~~~~~~~~~~~lW~~~~~ 273 (707)
.++|||.++|+ ||.++..-+..+.|+.+. .|+|.|+ -.++|..+-+.|++.+ ++|+||+-+...
T Consensus 169 ~eSYNPP~EYL--~~~~E~~~w~~~~pedR~~~fiP~k~~sLR~Vp~Y~~~i~ErF----------eRCLDLYLcPR~ 234 (260)
T PF08145_consen 169 AESYNPPPEYL--PTEEEKKEWEEMDPEDRKKNFIPQKFDSLRKVPAYENFIKERF----------ERCLDLYLCPRV 234 (260)
T ss_pred ccccCCchHhc--cCHHHHHHHHhcCchhccccccchhhhhhhccchHHHHHHHHH----------HHhhhhhcCcHh
Confidence 46999999999 887777777777776655 6999999 6788999999999888 689999998765
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=93.90 E-value=2.2 Score=46.04 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=89.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-CCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-KKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ 570 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~ 570 (707)
...+.++.+.+++.+++++.. | .+.. ... .+..- ... .....++++.+.++++.++++..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G---~i~~-s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-G---NFYS-TWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-c---eEEE-EcCCCCCeE-EEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC
Confidence 456888999998877766553 3 3322 222 22222 222 4556889999999999888887787654333444
Q ss_pred eEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEEEeC
Q 005235 571 RLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 571 ~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaSgs~ 643 (707)
..-..... ....+.++.++|++..+++| .+|.|. ...+.+ +-...... -......+.|..++..++ .+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 33222221 12347889999988766655 566554 344433 33443322 223578888887777666 456
Q ss_pred CCcEEEEe
Q 005235 644 DCTAYVFH 651 (707)
Q Consensus 644 Dg~I~Vwd 651 (707)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88888774
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=0.7 Score=55.29 Aligned_cols=148 Identities=12% Similarity=-0.002 Sum_probs=92.6
Q ss_pred CCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeE-----EEEEe------CCCCCeEEEEEcCCC-CEEEEEECCCc
Q 005235 539 HGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRL-----IKKLE------TGLKEVSSIAIHPAG-DNLIVGSREGK 603 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~-----~~~l~------~~~~~I~sl~~spdg-~~L~sGs~Dg~ 603 (707)
.-++..+...+|+...++.. +-.|..||+++-.. ..-|. .......++.|.|.= ...++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34556666667777666543 34799999875311 11111 122345778888864 45677788999
Q ss_pred EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235 604 LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD 683 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~ 683 (707)
|.+..+.........+. ....+++|+|+|.|..++.|-..|++.-|--. +. . ...+.+.-......|.+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~----le---i---k~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS----LE---I---KSEIPEPPVEENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc----cc---e---eecccCCCcCCCcceeE
Confidence 99988765433333332 45678999999999999999999999888321 11 0 11111111111123999
Q ss_pred EEEcCCCCEEEEEe
Q 005235 684 CKFHPRQPWLFTAG 697 (707)
Q Consensus 684 l~fspdg~~L~s~g 697 (707)
|+|-....||++-+
T Consensus 249 v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 249 VTWLSTQEFLVVYG 262 (1405)
T ss_pred EEEecceeEEEEec
Confidence 99998888887644
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=2.3 Score=44.10 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=83.3
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
.++ +....+.++.|+|+.+.|++.++ ..-.|+=...|+++.++.- +-...-.|.+..+|.++++--.++.+.++.++
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 345 55667999999999999998874 4444554455888887653 22345678888788888887788899999887
Q ss_pred CCCcce---------EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 611 LSSKPY---------RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 611 ~~~~~~---------~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
.....+ ......+...-.++|.|....|..+-+-.-+.||.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 653211 111122566789999999888888877776777744
No 413
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.76 E-value=16 Score=42.02 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=40.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCch
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEE 453 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~ 453 (707)
..++.++.|+.|.-.|..||+.+....... .+.+ .... ++ .+++++. ++.|..+|..++...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCcee
Confidence 467788899999999999999987765411 1111 1111 34 3555443 578999998888653
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.74 E-value=6.4 Score=39.16 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred cEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEE
Q 005235 432 PVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLST 511 (707)
Q Consensus 432 ~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat 511 (707)
.|+.++.+..|.+|++...... .......-+.|..+.++..|+||+|
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~---------------------------------~~~~F~Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECP---------------------------------LLCTFSTVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCc---------------------------------eeEEEcchhheeEEEeccccceEEE
Confidence 4666688888999997632111 0112234478999999999999999
Q ss_pred EeCCCCcc---EEEEEE-CCCC----ceee----------------------eeeccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235 512 VMPAGESR---AIFMHQ-LSKK----LSHR----------------------IPFKLHGLPVSSVFHPTRSIFFVSTKKN 561 (707)
Q Consensus 512 ~s~dg~~~---~V~Iwd-l~~~----~~~~----------------------~~~~~~~~V~~v~fspd~~~l~v~sdg~ 561 (707)
.-.+.... .+++|- ++.. .... ..+.....+.+++.-|-.--|++|+++.
T Consensus 77 lE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~ 156 (215)
T PF14761_consen 77 LEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK 156 (215)
T ss_pred EEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE
Confidence 87766444 566652 1111 0000 1113345778888888777788899999
Q ss_pred EEEEECCCC
Q 005235 562 IRVYDLLKQ 570 (707)
Q Consensus 562 I~iwDl~~~ 570 (707)
+.+|.+..+
T Consensus 157 l~lf~l~~~ 165 (215)
T PF14761_consen 157 LVLFTLKYQ 165 (215)
T ss_pred EEEEEEEEE
Confidence 999988654
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.70 E-value=0.18 Score=37.43 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~ 610 (707)
..|.+++|+|..++||.|+.+|.|.+|.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 469999999999999999999999999983
No 416
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=7 Score=40.55 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=93.8
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
....+.+..+.++. +|...+..+. .++|.|+++.... ... ...+--.++.. .|+++.++. +.-+.++|
T Consensus 83 i~~~~l~~Dv~vse--~yvyvad~ss---GL~IvDIS~P~sP-~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivd 154 (370)
T COG5276 83 INARDLFADVRVSE--EYVYVADWSS---GLRIVDISTPDSP-TLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EehhhhhheeEecc--cEEEEEcCCC---ceEEEeccCCCCc-ceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEE
Confidence 34456677778764 4555444444 8999999987765 333 33344444444 488898888 77788899
Q ss_pred CCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCCEEEEE
Q 005235 567 LLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYPLFASC 641 (707)
Q Consensus 567 l~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~llaSg 641 (707)
+.+. .+...+.........+++| |++-.++..|+-+.+-|+.....|...-....+ .+.++..+++.-+++..
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc
Confidence 8763 3444444443434567775 788888889999999999877666543333344 78888888877666554
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.47 E-value=13 Score=39.95 Aligned_cols=159 Identities=17% Similarity=0.286 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCC---ccEEEEEECCCC--c--ee----eeee-ccCC--------CeEEEEEeCCCCE
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGE---SRAIFMHQLSKK--L--SH----RIPF-KLHG--------LPVSSVFHPTRSI 553 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~---~~~V~Iwdl~~~--~--~~----~~~~-~~~~--------~V~~v~fspd~~~ 553 (707)
-+.+..+.+.+++..+++.+.++. ...+...++... . .. ..++ ...+ ..-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788888877777888887772 111444444431 0 00 0222 2222 3447888777776
Q ss_pred EEEEe-C------CeEEEEECCCCeEEEEEe---------------CCCCCeEEEEEcCCCCEEEEEEC-----CC----
Q 005235 554 FFVST-K------KNIRVYDLLKQRLIKKLE---------------TGLKEVSSIAIHPAGDNLIVGSR-----EG---- 602 (707)
Q Consensus 554 l~v~s-d------g~I~iwDl~~~~~~~~l~---------------~~~~~I~sl~~spdg~~L~sGs~-----Dg---- 602 (707)
+++.- + ..|+.++.. |+....+. .....+-+|+++|+|..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 66654 5 678888876 65544441 12345889999999997666543 21
Q ss_pred -------cEEEEECCCCCcceEEeec---------CCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecc
Q 005235 603 -------KLCWFDMDLSSKPYRVLKC---------HPKDITNVAFHRSYPLFASCS-----DDCTAYVFHGM 653 (707)
Q Consensus 603 -------~I~vwDl~~~~~~~~~l~~---------h~~~I~~vafspdg~llaSgs-----~Dg~I~Vwd~~ 653 (707)
+|..||..+...+...+.+ ....|..+.+-+++.+|+.== ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 2344555442223333322 345688999999999776421 34567777553
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.31 E-value=4.3 Score=40.37 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCEEEEEeCCeEEEEECCC--CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 005235 541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLK--QRLIKKLETGLKEVSSIAIHPAGDNLIVGS 599 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~--~~~~~~l~~~~~~I~sl~~spdg~~L~sGs 599 (707)
....++-.+.+.+|++++.+.|.+|++.+ .+++.+|..- +.|..|+++..|++|++--
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 33444444433344445588999999983 4667777654 7899999999999999853
No 419
>PHA02713 hypothetical protein; Provisional
Probab=93.27 E-value=4.2 Score=47.17 Aligned_cols=184 Identities=10% Similarity=0.103 Sum_probs=86.9
Q ss_pred CCCEEEEEeCCC---CccEEEEEECCCCceee-eeec-cCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235 505 RGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPFK-LHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI 573 (707)
Q Consensus 505 ~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~~-~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~ 573 (707)
++..++.|+.+. ....+..||..+..... .++. ..... +++. -++.+.++|+ + .++..||..+++-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 566667776532 12468888987765321 1221 11112 2222 2456666665 3 35889998876432
Q ss_pred E--EEeCCCCCeEEEEEcCCCCEEEEEECCC-----------------------cEEEEECCCCCcceEEeecC-CCCEE
Q 005235 574 K--KLETGLKEVSSIAIHPAGDNLIVGSREG-----------------------KLCWFDMDLSSKPYRVLKCH-PKDIT 627 (707)
Q Consensus 574 ~--~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----------------------~I~vwDl~~~~~~~~~l~~h-~~~I~ 627 (707)
. .+.........+++ +|...++|+.++ .+..||..+.. ...+..- .....
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~ 456 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGTIR 456 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCccccc
Confidence 1 22211111222333 577778887653 46778876541 1111110 11111
Q ss_pred EEEEcCCCCEEEEEeCCC------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC-
Q 005235 628 NVAFHRSYPLFASCSDDC------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS- 700 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg- 700 (707)
..+..-++.+.+.|+.++ .|..|| ..++.....+..+...... ...+++ ++...++||.||
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd------p~~~~~W~~~~~m~~~r~~----~~~~~~--~~~iyv~Gg~~~~ 524 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYN------TNTYNGWELITTTESRLSA----LHTILH--DNTIMMLHCYESY 524 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEec------CCCCCCeeEccccCccccc----ceeEEE--CCEEEEEeeecce
Confidence 111223567777777542 355664 3321111122223222221 222333 677888898888
Q ss_pred -cEEEEe
Q 005235 701 -VIRLYC 706 (707)
Q Consensus 701 -~IrlWd 706 (707)
++-.||
T Consensus 525 ~~~e~yd 531 (557)
T PHA02713 525 MLQDTFN 531 (557)
T ss_pred eehhhcC
Confidence 444443
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.17 E-value=4.3 Score=43.65 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=59.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE---EEEE----eCCCCCeEEEEEcCC----CCEEEEEECC--------
Q 005235 541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL---IKKL----ETGLKEVSSIAIHPA----GDNLIVGSRE-------- 601 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~---~~~l----~~~~~~I~sl~~spd----g~~L~sGs~D-------- 601 (707)
..++|+|.|++.+|++-..|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999876665589999999 44433 3333 123456899999995 4444444422
Q ss_pred CcEEEEECCCCC-------cceEEeec---CCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235 602 GKLCWFDMDLSS-------KPYRVLKC---HPKDITNVAFHRSYPLFASCSDDCT 646 (707)
Q Consensus 602 g~I~vwDl~~~~-------~~~~~l~~---h~~~I~~vafspdg~llaSgs~Dg~ 646 (707)
.+|.-|.+.... ..+..+.. .......++|.|+|.++++.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 234444443221 11222222 2344677999999988777765443
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.13 E-value=1.9 Score=51.15 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=47.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCC----------CCc--ceEEe--------ecCCCCEEEEEEcCC---CCEE
Q 005235 582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDL----------SSK--PYRVL--------KCHPKDITNVAFHRS---YPLF 638 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~----------~~~--~~~~l--------~~h~~~I~~vafspd---g~ll 638 (707)
.|..|.++|+|.+|+..+..| |.|..+-. +.. .-+++ ..+...|..+.|||. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 488899999999999888755 55544421 100 00111 123457889999996 4688
Q ss_pred EEEeCCCcEEEEec
Q 005235 639 ASCSDDCTAYVFHG 652 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~ 652 (707)
+.-..|+++|+||+
T Consensus 165 ~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 165 VVLTSDNTLRLYDI 178 (717)
T ss_pred EEEecCCEEEEEec
Confidence 88888999999954
No 422
>PHA02713 hypothetical protein; Provisional
Probab=93.05 E-value=7.9 Score=44.86 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCC--ccEEEEEECCCCceee-eeec-cCCCeEEEEEeCCCCEEEEEe-C--------------------
Q 005235 505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHR-IPFK-LHGLPVSSVFHPTRSIFFVST-K-------------------- 559 (707)
Q Consensus 505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~-~~~~-~~~~V~~v~fspd~~~l~v~s-d-------------------- 559 (707)
+|...+.|+.++. ...+..||..+..... .++. .......+++ ++.+.++|+ +
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 5677777776542 2468899988765431 1221 1111222222 466666555 3
Q ss_pred ---CeEEEEECCCCeEE--EEEeCCCCCeEEEEEcCCCCEEEEEECCC------cEEEEECCC-CC-cceEEeecCCCCE
Q 005235 560 ---KNIRVYDLLKQRLI--KKLETGLKEVSSIAIHPAGDNLIVGSREG------KLCWFDMDL-SS-KPYRVLKCHPKDI 626 (707)
Q Consensus 560 ---g~I~iwDl~~~~~~--~~l~~~~~~I~sl~~spdg~~L~sGs~Dg------~I~vwDl~~-~~-~~~~~l~~h~~~I 626 (707)
..|..||..+.+-. ..+....... +++. -+|...++|+.++ .+..||..+ .. ..+..+.......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 24778888876432 2221111111 2222 2466777777542 367888876 31 2222333222333
Q ss_pred EEEEEcCCCCEEEEEeCCC--cEEEEe
Q 005235 627 TNVAFHRSYPLFASCSDDC--TAYVFH 651 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg--~I~Vwd 651 (707)
..+++ ++.+.++|+.|| ++-.||
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcC
Confidence 33333 678999999888 566663
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=6.3 Score=45.74 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235 397 DGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL 449 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~ 449 (707)
--.|+|+++ +|+.+..+.- .+.+-.+.|+.+. .|++...+|++.+|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecch
Confidence 345888885 5777765554 4589999999998 699999999999999643
No 424
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.72 E-value=0.27 Score=48.83 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-CCEE
Q 005235 552 SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSS-IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-KDIT 627 (707)
Q Consensus 552 ~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-~~I~ 627 (707)
.-+++|+ +|.|.+|+..- +.....+......|.+ |..-.++.+..+|+.||.|+.|++... +.+.....|+ .++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGE 149 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcc
Confidence 4466666 99999998762 1111112222223333 233334568899999999999999866 5566666777 6777
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEecc
Q 005235 628 NVAFHRSYPLFASC--SDDCTAYVFHGM 653 (707)
Q Consensus 628 ~vafspdg~llaSg--s~Dg~I~Vwd~~ 653 (707)
....+..+.+++++ |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 77777788888888 889999999654
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=1.1 Score=53.63 Aligned_cols=143 Identities=10% Similarity=0.161 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee----eeee-------ccCCCeEEEEEeCCCCEEEE--EeCCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH----RIPF-------KLHGLPVSSVFHPTRSIFFV--STKKN 561 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~----~~~~-------~~~~~V~~v~fspd~~~l~v--~sdg~ 561 (707)
..+..+...+++...++..... +..|..+|+.+-... ..+| .....+.++.|.|.-+...+ .+|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3445555556666655554433 458889998653221 1233 22345668889987655333 34899
Q ss_pred EEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCCCC
Q 005235 562 IRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRSYP 636 (707)
Q Consensus 562 I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspdg~ 636 (707)
|++.-+.... .+.++. -....+|++|+|.|..+++|-..|++.-|-.... ....+.+ ....|.+|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEeccee
Confidence 9998775432 222332 2356899999999999999999999988876532 1111111 136799999987766
Q ss_pred EEEEE
Q 005235 637 LFASC 641 (707)
Q Consensus 637 llaSg 641 (707)
++++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 66543
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.66 E-value=0.15 Score=59.21 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=80.3
Q ss_pred ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCC--CeEE-----EEEeCCCCCeEEEEEc---CCCCEEEEEECCCcE
Q 005235 537 KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLK--QRLI-----KKLETGLKEVSSIAIH---PAGDNLIVGSREGKL 604 (707)
Q Consensus 537 ~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~--~~~~-----~~l~~~~~~I~sl~~s---pdg~~L~sGs~Dg~I 604 (707)
+..|.|-.++|-. +.+.+. - -|.+.||++.- |++. +....-...+.-+.|. ++.-++..|-.++.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 5566677777643 222222 2 26788888752 3322 2222222333444443 456788888888998
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEE-----------EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVA-----------FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~va-----------fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
++....... ...+++|...+..++ .||||..||.++.||.+++|.+... ......|+...+.|
T Consensus 208 ~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~----g~~~~rclhewkph 281 (1283)
T KOG1916|consen 208 RLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT----GKIVHRCLHEWKPH 281 (1283)
T ss_pred eEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee----ccccHhhhhccCCC
Confidence 888776542 255677887766654 5899999999999999999966432 22233345566666
Q ss_pred CC
Q 005235 674 TS 675 (707)
Q Consensus 674 ~~ 675 (707)
..
T Consensus 282 d~ 283 (1283)
T KOG1916|consen 282 DK 283 (1283)
T ss_pred CC
Confidence 53
No 427
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=1.3 Score=49.03 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=50.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeccccc---CCCCCCcccceEEeeCC----CCCCCCCeeEEEEcCCC---CEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYS---DLNQNPLIVPLEILRGH----TSSNGRGVMDCKFHPRQ---PWLF 694 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~---Dl~~~~~~~pl~~l~gh----~~~~~~gV~~l~fspdg---~~L~ 694 (707)
.|..|..++.|..+|-++.+|.+..+=-+-++ .+..+...+..+++.-. +......+..++|||+. +.|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999999966554211111 11122111111111100 11123348889999986 6788
Q ss_pred EEeCCCcEEEEeC
Q 005235 695 TAGADSVIRLYCH 707 (707)
Q Consensus 695 s~g~Dg~IrlWdl 707 (707)
.-+.|.+||+|++
T Consensus 185 iL~sdnviRiy~l 197 (741)
T KOG4460|consen 185 LLTSDNVIRIYSL 197 (741)
T ss_pred EEecCcEEEEEec
Confidence 8889999999986
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.30 E-value=0.31 Score=36.20 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 681 VMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|..++|+|...+||.++.+|.|.++.+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 999999999999999999999999864
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.01 E-value=3.1 Score=46.00 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=98.1
Q ss_pred cCCCCcEEEE-EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCC------ccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 384 YPVACYLEYK-GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPE------LPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 384 fp~~~~~l~s-gs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~------~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
+..+.++++. |+.-..+.-.|++.|+.+..|.....| -|.|.|... ..-+++-++..|.-.|+.....
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---- 549 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---- 549 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC----
Confidence 5566666664 666677888999999999999997777 788888631 1345555666666666554311
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEc----CCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWH----RRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~s----p~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
.+.+ ......++.-.|+ ....|+|+++..| -|++||--..+..
T Consensus 550 -------------------Ki~v-----------~esKdY~tKn~Fss~~tTesGyIa~as~kG---DirLyDRig~rAK 596 (776)
T COG5167 550 -------------------KIKV-----------VESKDYKTKNKFSSGMTTESGYIAAASRKG---DIRLYDRIGKRAK 596 (776)
T ss_pred -------------------ceee-----------eeehhccccccccccccccCceEEEecCCC---ceeeehhhcchhh
Confidence 0110 0111111111222 2346999999988 9999996555443
Q ss_pred eeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECC
Q 005235 533 RIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLL 568 (707)
Q Consensus 533 ~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~ 568 (707)
..+ +....|..+..+.+|.++++.+..++.+-|+.
T Consensus 597 -talP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 597 -TALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -hcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 445 66778899999999999999889999999875
No 430
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.85 E-value=23 Score=39.77 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=64.2
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEE----e-CCCCCeEEEEEcCCC------CEEEEEE---
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKL----E-TGLKEVSSIAIHPAG------DNLIVGS--- 599 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l----~-~~~~~I~sl~~spdg------~~L~sGs--- 599 (707)
..-.....++|.|++.+|++-. .|.|++++..++. .+..+ . ........|++||+- .+|.+..
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3345678999999998887776 5999999865542 22111 1 134668999999884 2343331
Q ss_pred -------CCCcEEEEECCCCC----cceEEee------cCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 600 -------REGKLCWFDMDLSS----KPYRVLK------CHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 600 -------~Dg~I~vwDl~~~~----~~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
....|.-|.+.... .....+. .|. -..|+|.|+|.++++.++.+
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCCC
Confidence 12345556554210 1112222 233 35688999999887766543
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.61 E-value=11 Score=41.73 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe----
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR---- 571 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~---- 571 (707)
....+..+++|.+++++.... .++-|+-....-+.........++++.|.+++.+++++..|.+..- ...++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~---~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~ 315 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGN---FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEED 315 (398)
T ss_pred ceeeEEEcCCCCEEEEECCcc---EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccc
Confidence 345566778888777776532 3333443222112133355667899999999999888877776543 33332
Q ss_pred -EEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---cCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 572 -LIKKLET--GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---CHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 572 -~~~~l~~--~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
....+.. ....+.++.|.+++..+++| ..|.+.... +.+ +...... .-...+..+.|.++++.+++| .+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 2222221 22348899999887766665 556655543 333 4444433 223568899998887777665 678
Q ss_pred cEEEE
Q 005235 646 TAYVF 650 (707)
Q Consensus 646 ~I~Vw 650 (707)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76655
No 432
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.22 E-value=10 Score=34.81 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=78.0
Q ss_pred EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE
Q 005235 423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW 502 (707)
Q Consensus 423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~ 502 (707)
-.|.... ..|++++..++|.|.++........ ..+..+.. ......|++++-
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~----------------~~~~~i~~-----------LNin~~italaa 55 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTG----------------RQDSDISF-----------LNINQEITALAA 55 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccc----------------cccCceeE-----------EECCCceEEEEE
Confidence 3455555 3688888999999999765432110 01222332 344556666654
Q ss_pred cC-----CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC----CCCEEEEEeCCeEEEEECCCCeEE
Q 005235 503 HR-----RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP----TRSIFFVSTKKNIRVYDLLKQRLI 573 (707)
Q Consensus 503 sp-----~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp----d~~~l~v~sdg~I~iwDl~~~~~~ 573 (707)
.+ ..+.|+.|+.. .+..||+...... .--.....|.++.+-. ..+++++|+...|.-||....+..
T Consensus 56 G~l~~~~~~D~LliGt~t----~llaYDV~~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 56 GRLKPDDGRDCLLIGTQT----SLLAYDVENNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred EecCCCCCcCEEEEeccc----eEEEEEcccCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 33 35677777753 7999999887643 1115567788887743 467788888899999998766666
Q ss_pred EEEe
Q 005235 574 KKLE 577 (707)
Q Consensus 574 ~~l~ 577 (707)
.+..
T Consensus 131 WtVt 134 (136)
T PF14781_consen 131 WTVT 134 (136)
T ss_pred EEec
Confidence 6554
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.98 E-value=2.5 Score=48.89 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEc--cCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWN--PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~s--pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
..+..+...++.|||...+.....-.. .+.|..+.|. |++ ..++++|..+.|.++.-...+.....
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~--------- 112 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG--------- 112 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC---------
Confidence 333445556899999998886554444 8999999995 567 47999999999999874321110000
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
..-..++..+ +..|+ .+|.+..|.++|..++.++. .+.|++-.
T Consensus 113 ------p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sGN-----qlfv~dk~ 156 (631)
T PF12234_consen 113 ------PSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSGN-----QLFVFDKW 156 (631)
T ss_pred ------cccceeEEEE--------eecCCCCCccceeEecCCeEEEEeCC-----EEEEECCC
Confidence 0000111111 22333 68999999999987776654 88888743
No 434
>PHA03098 kelch-like protein; Provisional
Probab=90.78 E-value=7.2 Score=44.85 Aligned_cols=105 Identities=10% Similarity=0.131 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCC---CccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-C--------CeEEEEECCCCe
Q 005235 505 RGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-K--------KNIRVYDLLKQR 571 (707)
Q Consensus 505 ~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d--------g~I~iwDl~~~~ 571 (707)
++..++.|+... ....+..||..+..... .++.....-.+++.. ++.++++|+ . ..+.+||..+++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 566666666432 12478899987765431 111111111122322 455555554 2 238899988764
Q ss_pred EEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235 572 LIKK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS 612 (707)
Q Consensus 572 ~~~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~ 612 (707)
-... +.........+.+ ++..++.|+.+ +.|.+||..+.
T Consensus 468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 3321 1111111222233 56777777654 45778887653
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.73 E-value=0.073 Score=57.98 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=80.8
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
.++....++|..+|+.++..... .+.+.+|++++...+...++....-.-+.|++..+.++.+. .+.+.||+..+.+
T Consensus 73 ~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 73 PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh
Confidence 45566778888888876665542 24899999998766523443333333478999999999998 8999999998876
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
.+-.+-.|...++++++.+.+ +.+.++.|..+.+-.
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTT 186 (615)
T ss_pred hhhhhcccccceeEEEecccc-eeeecCcHHHHHHhh
Confidence 665554488889999999876 555566665554443
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.71 E-value=31 Score=38.25 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 579 GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 579 ~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
....+.+|+.+|++.+.|+...-|+|.++|+..+ ..++.+++...+
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdA 351 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDA 351 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccc
Confidence 3355889999999999999888899999999977 677777776553
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.63 E-value=47 Score=40.19 Aligned_cols=173 Identities=10% Similarity=0.090 Sum_probs=102.9
Q ss_pred cCCcEEEEEEc---c--CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235 416 IGEAIQYVAWN---P--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 416 ~~~~V~~v~~s---p--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
...+|..|+|+ . +....++++-....+.|+.+.-........ .....+ .......+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~-~~~s~i------------------~~~~l~~i 138 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIR-SRPSRI------------------DPNPLLTI 138 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEccccccccccc-CCcccc------------------ccceeEEe
Confidence 47888999998 3 222257888888888888854332200000 000000 00000001
Q ss_pred e---ccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee----eee-ccCCCe----------EEEEEeCCC
Q 005235 491 L---RHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR----IPF-KLHGLP----------VSSVFHPTR 551 (707)
Q Consensus 491 ~---~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----~~~-~~~~~V----------~~v~fspd~ 551 (707)
. .-..+...|+|+| +...||.+...| ...||++....... ... ...+.+ ..+.|.++.
T Consensus 139 ~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G---~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~ 215 (765)
T PF10214_consen 139 SSSDTGGFPHADVAFNPWDQRQFAIVDEKG---NWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS 215 (765)
T ss_pred chhhcCCCccceEEeccCccceEEEEeccC---cEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC
Confidence 0 1234677899998 456899999888 99999992211110 111 222333 378899999
Q ss_pred CEEEEEeCCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC
Q 005235 552 SIFFVSTKKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 552 ~~l~v~sdg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~ 611 (707)
..|++++...+.++|+.+......+. ....+|..+.-+|.. .++++-+ ...|.|+++..
T Consensus 216 ~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 216 NRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 99999999999999999875533122 233568888888772 2333322 36899999987
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.47 E-value=1.8 Score=47.66 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=79.6
Q ss_pred EEEEEECCCCceeeeeeccCCCeEEEEEeCCCC--------EEEEEeCCeEEEEECCCC-eEEEEEeC----CCCCeEEE
Q 005235 520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS--------IFFVSTKKNIRVYDLLKQ-RLIKKLET----GLKEVSSI 586 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~--------~l~v~sdg~I~iwDl~~~-~~~~~l~~----~~~~I~sl 586 (707)
.+.-.|+..+... ........| -|.|.|+.+ .|+.-++..|.-.|.+.. ..+..... .....+|.
T Consensus 491 kLykmDIErGkvv-eeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~ 568 (776)
T COG5167 491 KLYKMDIERGKVV-EEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG 568 (776)
T ss_pred cceeeecccceee-eEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence 6666677777665 455444445 677777543 355556877877787642 22221111 11223333
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.-.. ..++|+||..|-|++||-- +.+....+.+...+|..|..+.+|.++++.+ ...+.+-|+.
T Consensus 569 ~tTe-sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 569 MTTE-SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccc-CceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 3333 3599999999999999964 3344556777788999999999999654433 2455555543
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.10 E-value=10 Score=34.90 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=67.4
Q ss_pred EEEcCCCCEEEEEeCCCCccEEEEEECCCCce-------eeeeeccCCCeEEEEEeC-----CCCEEEEEeCCeEEEEEC
Q 005235 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS-------HRIPFKLHGLPVSSVFHP-----TRSIFFVSTKKNIRVYDL 567 (707)
Q Consensus 500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~-------~~~~~~~~~~V~~v~fsp-----d~~~l~v~sdg~I~iwDl 567 (707)
-.|......|++++..+ .|.||+...... ....+.....|++++-.+ ....|++|+..+|..||+
T Consensus 4 GkfDG~~pcL~~aT~~g---KV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGG---KVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCC---EEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 34555556788888766 999998764421 102236777888887554 356799999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcC----CCCEEEEEECCCcEEEEECC
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHP----AGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~sp----dg~~L~sGs~Dg~I~vwDl~ 610 (707)
....-+..-... ..|+++.+-. ...++++| .+..|.-||.+
T Consensus 81 ~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred ccCchhhhhhCc-cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 877544322222 4567776632 23445554 34567777765
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.06 E-value=51 Score=39.71 Aligned_cols=203 Identities=9% Similarity=0.029 Sum_probs=107.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE---------EEEEEccC---------------CCccEEEEEeCCeEE
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI---------QYVAWNPL---------------PELPVLAVSVGQDVL 443 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V---------~~v~~spd---------------g~~~lla~s~d~~V~ 443 (707)
...+|.++.++.|.-.|..||+.+..+.....+ ..+++... ....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457888899999999999999999888763222 12333211 012466667777777
Q ss_pred EEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeC--C----
Q 005235 444 ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMP--A---- 515 (707)
Q Consensus 444 lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~--d---- 515 (707)
-+|..++...... ..++.+. |...-. .....-..+.-.| .+..+++++. |
T Consensus 274 ALDA~TGk~~W~f---------------g~~G~vd-l~~~~g------~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~ 331 (764)
T TIGR03074 274 ALDADTGKLCEDF---------------GNNGTVD-LTAGMG------TTPPGYYYPTSPPLVAGTTVVIGGRVADNYST 331 (764)
T ss_pred EEECCCCCEEEEe---------------cCCCcee-eecccC------cCCCcccccccCCEEECCEEEEEecccccccc
Confidence 7777666432100 0011111 100000 0000000011111 1334444432 1
Q ss_pred -CCccEEEEEECCCCceeeeee--c----------------cCCCe-EEEEEeCCCCEEEEEe-----------------
Q 005235 516 -GESRAIFMHQLSKKLSHRIPF--K----------------LHGLP-VSSVFHPTRSIFFVST----------------- 558 (707)
Q Consensus 516 -g~~~~V~Iwdl~~~~~~~~~~--~----------------~~~~V-~~v~fspd~~~l~v~s----------------- 558 (707)
...+.|+-+|+.+++.. -.+ . ..+.+ ..+++.+...+++..+
T Consensus 332 ~~~~G~I~A~Da~TGkl~-W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n 410 (764)
T TIGR03074 332 DEPSGVIRAFDVNTGALV-WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADE 410 (764)
T ss_pred cCCCcEEEEEECCCCcEe-eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcc
Confidence 11347888888888766 333 1 00111 2334455444444321
Q ss_pred --CCeEEEEECCCCeEEEEEeCCCCC---------eEEEEEcC-CCC---EEEEEECCCcEEEEECCCCC
Q 005235 559 --KKNIRVYDLLKQRLIKKLETGLKE---------VSSIAIHP-AGD---NLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 559 --dg~I~iwDl~~~~~~~~l~~~~~~---------I~sl~~sp-dg~---~L~sGs~Dg~I~vwDl~~~~ 613 (707)
.+.|.-.|+.+|+....++..... ..-+.+.- +|. .|+.++.+|.++++|.+++.
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 256777888999888777652111 12223332 553 78999999999999999873
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=3.4 Score=45.09 Aligned_cols=103 Identities=11% Similarity=0.184 Sum_probs=73.8
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
...|+|.++.|++|++.|++-- +++|.+++....+ ...+-+.....|..+.|+.+ .-+|.-+..| +-+|-...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 5678999999999999999986 9999999974322 22333444456889999865 5555555444 66776655
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~llaSg 641 (707)
..+.++..+.|...|+-..|.++-+++.-|
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 445566677888889989999987744333
No 442
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.88 E-value=1.2 Score=48.33 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=92.2
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE-EEEeCC-CC----CeE-EEEEcCCCCEEEEEECCCcE-EEEE
Q 005235 537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI-KKLETG-LK----EVS-SIAIHPAGDNLIVGSREGKL-CWFD 608 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~-~~l~~~-~~----~I~-sl~~spdg~~L~sGs~Dg~I-~vwD 608 (707)
.....|..+-..|+|+.+.+-+...+.++++.+.... +++... .+ .|+ ++..-..|.-|++++.||.| .|||
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4456788889999999999988899999999875332 122111 11 121 12223356678888889887 5888
Q ss_pred CCCCCcce----EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 609 MDLSSKPY----RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 609 l~~~~~~~----~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
++....+. +.++-....+..+.--.+-+-|++-+..|++.+|+.. ....+. .... .. ++.-+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st-----~~~~lL--~~~~--~~-----~~~~~ 363 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST-----SEKLLL--FERA--YQ-----APQLV 363 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecc-----cCccee--hhhh--hc-----Cccee
Confidence 87654321 1111112233333322334578888999999999532 111110 1111 11 26678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 005235 685 KFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 685 ~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++||.+.+|++-. .|.|+++.
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~ 384 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQ 384 (733)
T ss_pred eeCcccchheeec-CCceEEEE
Confidence 9999999988764 45677664
No 443
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.61 E-value=35 Score=35.89 Aligned_cols=181 Identities=9% Similarity=0.106 Sum_probs=94.2
Q ss_pred cEEEEeCCCCeEEEEEec-------CCcEEEEEEccCCC----ccEEEE-EeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 399 TVRIWEVESGRCLRVLEI-------GEAIQYVAWNPLPE----LPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~-------~~~V~~v~~spdg~----~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
.|.+||+.+++.++++.. .+.++.+++..... ...+.+ +..+.|.|+|+.++...- ++.-.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R------v~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR------VLHNSF 108 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE------EETCGC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE------EecCCc
Confidence 578899999999998887 45677787766321 122233 344589999988764311 000000
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCC-----ce-------
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKK-----LS------- 531 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~-----~~------- 531 (707)
. .+.....+...+ ........+..++.++ +|++|......+ -.+|.+.+. ..
T Consensus 109 ~-----~~p~~~~~~i~g----~~~~~~dg~~gial~~~~~d~r~LYf~~lss----~~ly~v~T~~L~~~~~~~~~~~~ 175 (287)
T PF03022_consen 109 S-----PDPDAGPFTIGG----ESFQWPDGIFGIALSPISPDGRWLYFHPLSS----RKLYRVPTSVLRDPSLSDAQALA 175 (287)
T ss_dssp T-----TS-SSEEEEETT----EEEEETTSEEEEEE-TTSTTS-EEEEEETT-----SEEEEEEHHHHCSTT--HHH-HH
T ss_pred c-----eeccccceeccC----ceEecCCCccccccCCCCCCccEEEEEeCCC----CcEEEEEHHHhhCcccccccccc
Confidence 0 000000000000 1112233477777766 666777666433 234443221 10
Q ss_pred -eeeeeccC-CCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-----C-eEEEEEeCCCCCeEEEEEcC--CCCEEEEE
Q 005235 532 -HRIPFKLH-GLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-----Q-RLIKKLETGLKEVSSIAIHP--AGDNLIVG 598 (707)
Q Consensus 532 -~~~~~~~~-~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-----~-~~~~~l~~~~~~I~sl~~sp--dg~~L~sG 598 (707)
....++.+ +....++++++|.++++-- .+.|..|+..+ . +.+..-...-.++.++.+.+ +|.+.+..
T Consensus 176 ~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 176 SQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 00222222 4666788999888777766 79999999886 1 22222111236889999998 66555554
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.48 E-value=18 Score=40.64 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=40.9
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEe----e-cCCCCEEEEEEcCCC
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVL----K-CHPKDITNVAFHRSY 635 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l----~-~h~~~I~~vafspdg 635 (707)
.+..+-.....|+|.|+|++|++--..|+|++++..... .++..+ . ........|+|||+.
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344445667899999999877766557999999865432 122111 1 125678999999986
No 445
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.28 E-value=13 Score=43.10 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCCc---cEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCeEEE
Q 005235 505 RGDYLSTVMPAGES---RAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-KK-----NIRVYDLLKQRLIK 574 (707)
Q Consensus 505 ~g~~lat~s~dg~~---~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-dg-----~I~iwDl~~~~~~~ 574 (707)
+|...++|+.++.. .+|..||..+..... .++.....-..++.. ++.+.++|+ ++ +|..||..+.+-..
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 67788888877755 689999988876542 122222222223333 345555555 43 47889988764332
Q ss_pred E--EeCCCCCeEEEEEcCCCCEEEEEECCCc-----EEEEECCC
Q 005235 575 K--LETGLKEVSSIAIHPAGDNLIVGSREGK-----LCWFDMDL 611 (707)
Q Consensus 575 ~--l~~~~~~I~sl~~spdg~~L~sGs~Dg~-----I~vwDl~~ 611 (707)
. +......+....+ ++...++|+.||. |..||..+
T Consensus 506 v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2 2223222323333 4677888887764 55555544
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.00 E-value=15 Score=43.28 Aligned_cols=112 Identities=10% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCC-------C---------ceeeeee---ccCCCeEEEEEe--CCC
Q 005235 495 KMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSK-------K---------LSHRIPF---KLHGLPVSSVFH--PTR 551 (707)
Q Consensus 495 ~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~-------~---------~~~~~~~---~~~~~V~~v~fs--pd~ 551 (707)
..|+.|.... ....|+.+..|| .|.+|.+.. . +....|+ .....+.++++| ...
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG---~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDG---DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS 177 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCC---eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc
Confidence 3455554433 456788888888 999996521 0 0000232 566789999999 788
Q ss_pred CEEEEEe-CCeEEEEECCC--CeEEE-EEeCCCCCeEEEEEcCCC-----C-EEEEEECCCcEEEEEC
Q 005235 552 SIFFVST-KKNIRVYDLLK--QRLIK-KLETGLKEVSSIAIHPAG-----D-NLIVGSREGKLCWFDM 609 (707)
Q Consensus 552 ~~l~v~s-dg~I~iwDl~~--~~~~~-~l~~~~~~I~sl~~spdg-----~-~L~sGs~Dg~I~vwDl 609 (707)
++||+++ ...|.||-... .+... .-..+...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888887 46666654432 22111 111244568888886543 2 7888999999999887
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.64 E-value=25 Score=37.74 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCEEEEEECC------CcEEEEECCCCCcceEEe---------------ecCCCCEEEEEEcCCCCEEEEE
Q 005235 583 VSSIAIHPAGDNLIVGSRE------GKLCWFDMDLSSKPYRVL---------------KCHPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 583 I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~~~~~~~l---------------~~h~~~I~~vafspdg~llaSg 641 (707)
.-+|++.++|.++++.-.+ ..|..++.+ + +....+ ...+...-+++++|+|..|+++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 4578887788888877666 778888876 3 333322 1134568899999999955554
Q ss_pred eC-----CC---------cEEEEecccccCCCC-C-CcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEE
Q 005235 642 SD-----DC---------TAYVFHGMVYSDLNQ-N-PLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 642 s~-----Dg---------~I~Vwd~~~~~Dl~~-~-~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s 695 (707)
.. |+ .++|+.. +..+ . +...-...+..- ......+|.++.+-+++.+|+-
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~----d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRY----DPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEe----cCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 32 32 1566644 2222 1 111111122110 0002345999999999997753
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=40 Score=35.19 Aligned_cols=260 Identities=12% Similarity=0.110 Sum_probs=137.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEE---EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCL---RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l---~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
+++|.+..+.-++|.|+.+...- ..+...+.-.++..+.+ ...++..+.-+.+.|+....... +.
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn---~aYVadlddgfLivdvsdpssP~-------la-- 164 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN---YAYVADLDDGFLIVDVSDPSSPQ-------LA-- 164 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC---EEEEeeccCcEEEEECCCCCCce-------ee--
Confidence 46777777777999999875433 33333455566666544 46666656677777876542210 00
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCe
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLP 542 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V 542 (707)
+........-..++.| |++-..+..++ .+.|-|++..... .-+ .....+
T Consensus 165 ----------------------grya~~~~d~~~v~IS--Gn~AYvA~~d~---GL~ivDVSnp~sP-vli~~~n~g~g~ 216 (370)
T COG5276 165 ----------------------GRYALPGGDTHDVAIS--GNYAYVAWRDG---GLTIVDVSNPHSP-VLIGSYNTGPGT 216 (370)
T ss_pred ----------------------eeeccCCCCceeEEEe--cCeEEEEEeCC---CeEEEEccCCCCC-eEEEEEecCCce
Confidence 0111112222455554 67777777877 8999999887765 222 233467
Q ss_pred EEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe--CCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235 543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE--TGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~--~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~ 618 (707)
.++..+++..++++... .+.+-|....+....+- ....+ ++.+.+ .|++..+...+.-+.+-|+.....+.-.
T Consensus 217 ~sv~vsdnr~y~vvy~e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~ 293 (370)
T COG5276 217 YSVSVSDNRAYLVVYDE-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLS 293 (370)
T ss_pred EEEEecCCeeEEEEccc-ceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCCchh
Confidence 78888877666665543 46666766544222221 11122 333344 4667777777777888888765433311
Q ss_pred --eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 619 --LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 619 --l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
+......-..+..+ +.++..+..+ +..|-+....+.+...+ +.-.. +.+++.+-+.+.+.+.
T Consensus 294 ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~---------g~~ti----~~s~~v~~~~q~~y~~ 357 (370)
T COG5276 294 SSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRP---------GRPTI----GQSCDVSVDTQIIYST 357 (370)
T ss_pred ccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhccccc---------CcceE----eeecceEEEeeEEEEe
Confidence 11111122233332 3333333333 33334332211111110 10000 3334444455588888
Q ss_pred eCCCcEEEEeC
Q 005235 697 GADSVIRLYCH 707 (707)
Q Consensus 697 g~Dg~IrlWdl 707 (707)
..++-+.||+.
T Consensus 358 d~~~gl~i~~~ 368 (370)
T COG5276 358 DYNGGLSIIEY 368 (370)
T ss_pred ecCCCEEEEEe
Confidence 88999999873
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=11 Score=41.34 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=84.8
Q ss_pred EEEEEeCCCCEEEEEeCCeEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cce
Q 005235 543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPY 616 (707)
Q Consensus 543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~ 616 (707)
+.+-|...++.|++...|.+.-|-+... -++..-....++|.++.||+|.+.||+--.++.|.+++..... ...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4455555555565555555555544321 1222222344689999999999999999999999999984321 122
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
.+.+..+..|....|+.. .-+|..++.| |-+|-+. .+.+ .++..+.|... |.-..|+++-..++-
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~----pekr----slRlVks~~~n----vnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL----PEKR----SLRLVKSHNLN----VNWYMYCPETAVILL 170 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc----hhhh----hhhhhhhcccC----ccEEEEccccceEee
Confidence 233344566899999866 5566665555 6677431 1111 13444555544 888889998775433
No 450
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.09 E-value=13 Score=43.42 Aligned_cols=119 Identities=12% Similarity=0.193 Sum_probs=73.2
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeee--ccCCCeEEEEEeCC
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT 550 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd 550 (707)
..+++|...+..........+.-..++|-|.|..+++.+.||.. ..|..+.-+.-+.-...+ +....+..++|+-.
T Consensus 227 ra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~ 306 (1243)
T COG5290 227 RAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLL 306 (1243)
T ss_pred cceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHH
Confidence 34566666555444433445555679999999999999987733 344444433222110111 34455667788777
Q ss_pred CCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235 551 RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD 593 (707)
Q Consensus 551 ~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~ 593 (707)
...++++..+.|.+|-...-.-.-+..-....+.-+.|||...
T Consensus 307 s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 307 STVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred HHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence 7778888889999998765443323333334577788988653
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.01 E-value=1.8 Score=50.71 Aligned_cols=182 Identities=13% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCcEEEEeCC--CCeEEEEEec------CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCc-hhcccccceeeec
Q 005235 397 DGTVRIWEVE--SGRCLRVLEI------GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNE-EEQRRVKDLLHVE 465 (707)
Q Consensus 397 DgtVrIWd~~--tg~~l~~l~~------~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v~~~~ 465 (707)
-|.+.||++. .|+....+.. ...+.-|.|+|--- .++..+-.++.|++.+..+... .+.+|...+..++
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHH
Confidence 3567888875 4554333322 56667788887321 1233333566777777655433 2222333333322
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-----CCceeeeee-ccC
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-----KKLSHRIPF-KLH 539 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-----~~~~~~~~~-~~~ 539 (707)
|- ..+.+.--..||||..||+++.|| .+..|++- ..+++ ... .|.
T Consensus 232 ~~-------------------------~~g~~~l~~lSpDGtv~a~a~~dG---~v~f~Qiyi~g~~~~rcl-hewkphd 282 (1283)
T KOG1916|consen 232 FF-------------------------AEGVLKLASLSPDGTVFAWAISDG---SVGFYQIYITGKIVHRCL-HEWKPHD 282 (1283)
T ss_pred HH-------------------------hhchhhheeeCCCCcEEEEeecCC---ccceeeeeeeccccHhhh-hccCCCC
Confidence 21 011111112789999999999999 66666653 23333 333 333
Q ss_pred -CCeEEEEEeCCC---------CEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC------------EE
Q 005235 540 -GLPVSSVFHPTR---------SIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD------------NL 595 (707)
Q Consensus 540 -~~V~~v~fspd~---------~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~------------~L 595 (707)
++-.|..|+.+. .++++++ .+.+++|....-+|+-.+ -...|..+. -++|. .+
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHH
Confidence 333444455432 2344455 477888887765555111 123344444 33332 12
Q ss_pred EEEECCCcEEEEECC
Q 005235 596 IVGSREGKLCWFDMD 610 (707)
Q Consensus 596 ~sGs~Dg~I~vwDl~ 610 (707)
+.-+.++.|.+|.-+
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 334556777777544
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.81 E-value=3.1 Score=41.98 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=47.9
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE---------------ecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVL---------------EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l---------------~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
.+...+.+++.-..+|.+++||+.+++++..- .....|..+.++.+| ..++.-.+|..+.|+.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEeCCCEEEecc
Confidence 34456677888899999999999998876443 123678888999888 3455556678888886
Q ss_pred CC
Q 005235 448 GL 449 (707)
Q Consensus 448 ~~ 449 (707)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 54
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.20 E-value=4 Score=41.12 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=47.8
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCcceEE------ee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRV------LK-------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~------l~-------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+...+.+|++-+.+|.+++||+.+....+.. +. .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3446889999999999999999876322221 22 3456789999999998777766 478888865
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.10 E-value=20 Score=41.88 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=83.0
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--ee-ccCCCeEEEEEeCCCCE
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI--PF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~--~~-~~~~~V~~v~fspd~~~ 553 (707)
|++++..+...+...-..+.+-.+.|+.+. .|++...+| +++|+++........ -+ .....|..+.|..+|-.
T Consensus 66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g---~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 66 IRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDG---TVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred EEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccc---eEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 445555555444432223378899999665 566677777 999999876544311 11 12223444444445533
Q ss_pred EEEEeCCeEEEE-ECCCCeEEEEEeC---CCCCeEEEEEcCCCC---EEEEEE-CCCcEEEEECCCCCcceEEeecCCCC
Q 005235 554 FFVSTKKNIRVY-DLLKQRLIKKLET---GLKEVSSIAIHPAGD---NLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 554 l~v~sdg~I~iw-Dl~~~~~~~~l~~---~~~~I~sl~~spdg~---~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
+++. +|.+.+- +.... ..+++.. ..-.-+|.++-+++. .++--. ..+ ..++....+......+......
T Consensus 142 vlt~-~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 142 VLTV-SGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred EEec-CCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 3333 4444443 33321 2222221 111113333333321 111110 111 1222222221112222222356
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+..++.||++++||--...|.|.+-..
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~ 245 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSI 245 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEec
Confidence 788999999999999999998888754
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.07 E-value=4 Score=39.42 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCcEEEEec
Q 005235 624 KDITNVAFHRSY------PLFASCSDDCTAYVFHG 652 (707)
Q Consensus 624 ~~I~~vafspdg------~llaSgs~Dg~I~Vwd~ 652 (707)
..|.+++|||.| .+||+.+.+|.|.||.-
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 479999999954 38999999999999953
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.87 E-value=68 Score=35.46 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=81.4
Q ss_pred eEEEEEeCCCCEEEEEeCCeEEE-EECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc----
Q 005235 542 PVSSVFHPTRSIFFVSTKKNIRV-YDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK---- 614 (707)
Q Consensus 542 V~~v~fspd~~~l~v~sdg~I~i-wDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~---- 614 (707)
...+...+++.+++++..|.+.. ||- +.. ...-......++++.+.++|..++++ ..|.+.+ ..+.+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 44556678888888887665443 332 221 11112234568999999999888776 4565544 3333310
Q ss_pred ceEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 615 PYRVLKC--HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 615 ~~~~l~~--h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
.+..+.. -...+.++.|.+++..+++| ..|.|.+.. ..+........-.+-... ...+.|.+++..
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-------D~G~tW~~~~~~~~~~~~----ly~v~f~~~~~g 384 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-------DGGKSWKRDKGADNIAAN----LYSVKFFDDKKG 384 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-------CCCcceeEccccCCCCcc----eeEEEEcCCCce
Confidence 2222221 12358999999888876655 677776652 112111111100111122 788999877665
Q ss_pred EEEEeCCCcEEEE
Q 005235 693 LFTAGADSVIRLY 705 (707)
Q Consensus 693 L~s~g~Dg~IrlW 705 (707)
+++ |.+|.|.-|
T Consensus 385 ~~~-G~~G~il~~ 396 (398)
T PLN00033 385 FVL-GNDGVLLRY 396 (398)
T ss_pred EEE-eCCcEEEEe
Confidence 554 567877655
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.79 E-value=0.13 Score=56.23 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRL 572 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~ 572 (707)
.......|-+.+.-++.++.+. .|..||-..... ......+....++|.-++..+++.. .+.+.+||+.+...
T Consensus 35 v~pi~~~w~~e~~nlavaca~t---iv~~YD~agq~~--le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANT---IVIYYDKAGQVI--LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cccceeeEecCCCceehhhhhh---HHHhhhhhccee--cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3444567777776677777655 777777544322 2334556677788888888777654 69999999976421
Q ss_pred EEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE
Q 005235 573 IKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL 637 (707)
Q Consensus 573 ~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l 637 (707)
.++. ++...-+-+.|++.+..++.|...|.+.|++..+. +..-.+-.|...++++++.+.+..
T Consensus 110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred -HHHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEeccccee
Confidence 1222 22222233789999999999999999999999887 334344448899999999987653
No 458
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.91 E-value=61 Score=34.10 Aligned_cols=146 Identities=11% Similarity=0.148 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCC----CEEEEEeCCCCccEEEEEECCCCceeeeee-c-------------------cCCCeEEEEEeC
Q 005235 494 FKMVSSVEWHRRG----DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-------------------LHGLPVSSVFHP 549 (707)
Q Consensus 494 ~~~V~~v~~sp~g----~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-------------------~~~~V~~v~fsp 549 (707)
.+.+..+.+.... ..+|..+..+ ...|.|+|+.+++.. +.+ . ....+..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~-~~glIV~dl~~~~s~-Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~ 137 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSG-GPGLIVYDLATGKSW-RVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSP 137 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETT-TCEEEEEETTTTEEE-EEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-T
T ss_pred ccccceEEEEccCCCCcceEEEEeCCC-cCcEEEEEccCCcEE-EEecCCcceeccccceeccCceEecCCCccccccCC
Confidence 4566777776522 2455555444 448999999988765 222 1 122356666655
Q ss_pred ---CCCEEEEEeCCeEEEEECCC-----C---------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 550 ---TRSIFFVSTKKNIRVYDLLK-----Q---------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 550 ---d~~~l~v~sdg~I~iwDl~~-----~---------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
+++.|+-+.-..-++|-+.+ . ..++.+-........++++++|.++++--..+.|..|+....
T Consensus 138 ~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 138 ISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp TSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred CCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 55566665522223333321 1 112222111134567889999988888888999999998852
Q ss_pred Cc--ceEEeecC---CCCEEEEEEcC--CCCEEEEE
Q 005235 613 SK--PYRVLKCH---PKDITNVAFHR--SYPLFASC 641 (707)
Q Consensus 613 ~~--~~~~l~~h---~~~I~~vafsp--dg~llaSg 641 (707)
-. -+..+..- -..+.++.+.+ +|.+.+.+
T Consensus 218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 218 YTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp B-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred cCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 11 12223211 24678888888 77655554
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=83.55 E-value=40 Score=38.29 Aligned_cols=102 Identities=8% Similarity=-0.043 Sum_probs=52.0
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE--EEEeCCCC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI--KKLETGLK 581 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~--~~l~~~~~ 581 (707)
+|...+.|+.++....+..||..+..-... +......-.+++ .-++.+.++| |.+.+||..+++-. ..+.....
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~ 438 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRD 438 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC--CceEEecCCCCcEeEcCCCCCCcc
Confidence 577777777665445788898877654311 111111111222 2234444444 45778998776432 22222222
Q ss_pred CeEEEEEcCCCCEEEEEECC-----CcEEEEECCC
Q 005235 582 EVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDL 611 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~ 611 (707)
....+.+ +|...++|+.+ ..+..||..+
T Consensus 439 ~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 439 NPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 2222333 56777888754 2355666654
No 460
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.40 E-value=1e+02 Score=36.23 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.+|.|.+++ ..++++..+|.|.+|+...+...... ....... .-..+..-
T Consensus 129 ~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~------------------------~l~~~~~-~~v~ys~f 182 (670)
T PF10395_consen 129 DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVP------------------------QLKLKSS-INVSYSKF 182 (670)
T ss_pred ccceEEEEEecCC-CEEEEEEcCCcEEEEecccccccccc------------------------ccccccc-cceehhhh
Confidence 6788999999888 47888889999999998322111000 0000000 00011122
Q ss_pred eEEEEEcCCCCEEEEEeC-CCCccEEEEEEC--CCCceeeee--eccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235 497 VSSVEWHRRGDYLSTVMP-AGESRAIFMHQL--SKKLSHRIP--FKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl--~~~~~~~~~--~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~ 571 (707)
|.....-...+++++.+. .+..-.++++.+ ......... ...........|.-+...|..-.+++|.+|++...+
T Consensus 183 v~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~ 262 (670)
T PF10395_consen 183 VNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQ 262 (670)
T ss_pred hcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCce
Confidence 222222223456666666 554567888888 222221111 111222233333333333444478899999998877
Q ss_pred EEEEEeCC-----C-CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 572 LIKKLETG-----L-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 572 ~~~~l~~~-----~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
..+++.-. . ..+.++. .|..+.++.+. ++.|++.|+.-.
T Consensus 263 ~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs~-~nkIyLld~~~~ 307 (670)
T PF10395_consen 263 IQKTISLPSIIDKESDDLVSLK-PPSPNRVLLSV-NNKIYLLDLKFE 307 (670)
T ss_pred EEEEEEechhhccccccceEee-cCCCCeEEEEc-CCEEEEEeehhh
Confidence 77665532 1 1233333 23344454443 568999998643
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.27 E-value=5.8 Score=38.29 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCCccEEEEEECCCC
Q 005235 495 KMVSSVEWHRRG------DYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 495 ~~V~~v~~sp~g------~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
..|.+++|||.| .+||+...++ .|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~---~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNG---RLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCC---eEEEEecCCC
Confidence 478999999955 4677888777 9999986643
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.02 E-value=6.2 Score=27.73 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235 549 PTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAI 588 (707)
Q Consensus 549 pd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~ 588 (707)
|++++|+++. +++|.++|+.+++.+..+..+ .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788888876 699999999999888888775 33445554
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.66 E-value=3.4 Score=30.01 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEecc
Q 005235 624 KDITNVAFHRSY---PLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 624 ~~I~~vafspdg---~llaSgs~Dg~I~Vwd~~ 653 (707)
++|+++.|||.. .+||.+-.-|.|.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 478999999854 488888888999999765
No 464
>PHA03098 kelch-like protein; Provisional
Probab=82.60 E-value=37 Score=39.03 Aligned_cols=104 Identities=9% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCEEEEEeCCCC---ccEEEEEECCCCceeeee-ec-cCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235 505 RGDYLSTVMPAGE---SRAIFMHQLSKKLSHRIP-FK-LHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI 573 (707)
Q Consensus 505 ~g~~lat~s~dg~---~~~V~Iwdl~~~~~~~~~-~~-~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~ 573 (707)
++..++.|+.++. ...+..||..+......+ +. .......+.+ ++.+++.|+ + ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4556666665431 136778888776553111 11 1122222222 455666665 3 35788998876432
Q ss_pred E--EEeCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEECCCC
Q 005235 574 K--KLETGLKEVSSIAIHPAGDNLIVGSRE------GKLCWFDMDLS 612 (707)
Q Consensus 574 ~--~l~~~~~~I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~ 612 (707)
. .+....... +++. -++..++.|+.+ ..+..||+.+.
T Consensus 372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 1 111111111 2222 256677777632 35788888754
No 465
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.32 E-value=52 Score=40.01 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=96.8
Q ss_pred cEEEEecCCccceEEeccC-----CCeEEEEEcCCCC--EEEEEeCCC--------CccEEEEEECCCCceeeeeeccCC
Q 005235 476 SIVSWLQHDKLDGIRLRHF-----KMVSSVEWHRRGD--YLSTVMPAG--------ESRAIFMHQLSKKLSHRIPFKLHG 540 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~-----~~V~~v~~sp~g~--~lat~s~dg--------~~~~V~Iwdl~~~~~~~~~~~~~~ 540 (707)
.|++.+..++.......+. ..|..+.|+.... ++++++... ..+.++.|++-..... ..|-|..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~-lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK-LELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce-eeeeecc
Confidence 3666666655544433322 2456677765443 334443221 1234566665443333 4442222
Q ss_pred --CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 541 --LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 541 --~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
+-.-.+..|...++++|-...+++||+.+.+++++... -...|+++.+ .+..+++|..--.|.++-.+.....+
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 22234566777788888899999999988766654332 2355777777 47788888776667666555444444
Q ss_pred EEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 617 RVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 617 ~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
..+-.- ...|+++.+- |...+|.|..=|.+.+-
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEE
Confidence 445432 2345555443 45566666666666655
No 466
>PRK05560 DNA gyrase subunit A; Validated
Probab=81.88 E-value=1.3e+02 Score=36.55 Aligned_cols=159 Identities=11% Similarity=0.124 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc--eee------eeec-cCCCeEEEEEeC--CCCEEEEEe-CCeEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL--SHR------IPFK-LHGLPVSSVFHP--TRSIFFVST-KKNIR 563 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~--~~~------~~~~-~~~~V~~v~fsp--d~~~l~v~s-dg~I~ 563 (707)
.+..+......+.|+..+..|.--.+.++++.... .+. ..+. ...-+.++.+.. +...++..+ +|.++
T Consensus 538 ~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiK 617 (805)
T PRK05560 538 FVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVK 617 (805)
T ss_pred eeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEE
Confidence 34444444455666666666622233334444322 110 1122 223344555552 456666666 89888
Q ss_pred EEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCCEEE
Q 005235 564 VYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKDITN 628 (707)
Q Consensus 564 iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~I~~ 628 (707)
--.+.. +....++..+ ..+..+......+.|+..+..|.+..+.+..- +.....|.....-+..
T Consensus 618 Ri~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~ 696 (805)
T PRK05560 618 KTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSM 696 (805)
T ss_pred EEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEE
Confidence 877642 2233344444 33434434445567888888898887776421 0111122221222333
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
+.+.++...++..+..|.++...+..+
T Consensus 697 ~~v~~~~~~il~vTk~G~iKr~~l~e~ 723 (805)
T PRK05560 697 DVVREDSQEILTVTENGYGKRTPVSEY 723 (805)
T ss_pred EEEcCCCcEEEEEEeCCeEEEEEHHHh
Confidence 444444446788888999988876543
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.55 E-value=36 Score=39.58 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=42.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
+.-++.|+.||+|++|+....+.-+.+....+-..+.|...| ++++.+|..+.-|.-
T Consensus 26 ~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 26 GQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred CceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence 346788999999999998876654444445566677787777 888888888777763
No 468
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.46 E-value=8.1 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCcEEEEECCC
Q 005235 581 KEVSSIAIHPAG---DNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 581 ~~I~sl~~spdg---~~L~sGs~Dg~I~vwDl~~ 611 (707)
+.|.++.|+|.. ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 5888888889999999985
No 469
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.08 E-value=1.1e+02 Score=33.99 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=75.4
Q ss_pred cCCCccEEEEEeCCeEEEEECCCCCchh------cccccceeeeccc-ccccCCCC--------cEEEEecCC--cc---
Q 005235 427 PLPELPVLAVSVGQDVLILNTGLGNEEE------QRRVKDLLHVETP-TAPDDNMA--------SIVSWLQHD--KL--- 486 (707)
Q Consensus 427 pdg~~~lla~s~d~~V~lwd~~~~~~~~------~~~~~~v~~~~~~-~~~~~~d~--------~i~iW~~~~--~~--- 486 (707)
+++...|++|+..|.++||.+....... .....+++.+... +..+..+. .+.+|.+.. +.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3333479999999999999996543211 1123344444443 23333333 334444411 10
Q ss_pred ---c--eEEeccC--CCeEEEEEcC----C-CCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235 487 ---D--GIRLRHF--KMVSSVEWHR----R-GDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 487 ---~--~~~~~h~--~~V~~v~~sp----~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l 554 (707)
. .....|. .....+++-+ . -.++++-+-|| .+.+++-+..... ..+..---...++|.+....|
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG---~L~~feqe~~~f~-~~lp~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDG---SLSFFEQESFAFS-RFLPDFLLPGPLCYCPRTDSF 189 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCc---eEEEEeCCcEEEE-EEcCCCCCCcCeEEeecCCEE
Confidence 1 1122222 2223333322 2 35777888888 9999987665433 333333334457788877777
Q ss_pred EEEe-CCeEEEEEC
Q 005235 555 FVST-KKNIRVYDL 567 (707)
Q Consensus 555 ~v~s-dg~I~iwDl 567 (707)
++++ ...|..|..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 7777 678888875
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.02 E-value=91 Score=32.93 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=95.2
Q ss_pred EEEEEeCCCCccEEEEEECCCCce---e-eeee-c-cCCCeE-EEEEeC--CCCEEEEEe--CCeEEEEECCCCeEEE--
Q 005235 508 YLSTVMPAGESRAIFMHQLSKKLS---H-RIPF-K-LHGLPV-SSVFHP--TRSIFFVST--KKNIRVYDLLKQRLIK-- 574 (707)
Q Consensus 508 ~lat~s~dg~~~~V~Iwdl~~~~~---~-~~~~-~-~~~~V~-~v~fsp--d~~~l~v~s--dg~I~iwDl~~~~~~~-- 574 (707)
.|+.++.+| +|.-|.-.-... . ...+ . ..+.|. .+++.. .+.+|+.+. +++|.|||-.-.++..
T Consensus 102 ~Fif~tEdG---TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDG---TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCc---eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 467788888 999998543332 1 0223 2 224443 566654 367888877 7999999865332210
Q ss_pred EEe-----CCCCC--e---------EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CCCCEEEEEEcC---
Q 005235 575 KLE-----TGLKE--V---------SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HPKDITNVAFHR--- 633 (707)
Q Consensus 575 ~l~-----~~~~~--I---------~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~~~I~~vafsp--- 633 (707)
.+. ..-.+ | +-..-.+++..=+.|..-|.|-+||+. + ..++.+.. .-..-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G-~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-G-QLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-C-cEEEEeccCCcccCCceeeeChhhh
Confidence 011 01011 1 111112222222334445789999986 3 56666631 223446677755
Q ss_pred ---CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC------CCEEEEEeC
Q 005235 634 ---SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR------QPWLFTAGA 698 (707)
Q Consensus 634 ---dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd------g~~L~s~g~ 698 (707)
.+.+|+----||+|.+||. .+....-++..-.++... --|++.|+|... ..+.+++|-
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~------~sG~~~g~L~~~~G~pi~-i~GLWgL~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDP------QSGAQLGQLLDPDNHPVK-VDGLWSLTFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred CCCCCCeEEeecCCceeEEecC------CCCceeeeecCCCCCeEE-ecCeEEeeeCCCcCCCCcceEEEEeCC
Confidence 4668877778999999953 333332222222222110 124788999762 235566653
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.73 E-value=1.2e+02 Score=37.10 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred cEEEEeCCCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 399 TVRIWEVESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
.|++.|..+|..+..+.. .-.|.++.|+......+++++...+-.+|.-.. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~-----------------------~ 910 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSI-----------------------S 910 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccccccccc-----------------------C
Confidence 488999888887777666 235677778776643466666555444433111 2
Q ss_pred CCcEEEEecCCccceEEecc----CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--cc-CCCeEEEE
Q 005235 474 MASIVSWLQHDKLDGIRLRH----FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL-HGLPVSSV 546 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h----~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~-~~~V~~v~ 546 (707)
++.+..|+.-........-| .+.|. +.+|-+.++++|.. +.+++|++.+.+.. +.. +. ...|..++
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~LagvG----~~l~~YdlG~K~lL-Rk~e~k~~p~~Is~iq 983 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGVG----RFLRLYDLGKKKLL-RKCELKFIPNRISSIQ 983 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEecc----cEEEEeeCChHHHH-hhhhhccCceEEEEEe
Confidence 34445554322111221122 23333 44565556655543 28999999887665 444 32 34455555
Q ss_pred EeCCCCEEEEEe-CCeEEE--EECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 547 FHPTRSIFFVST-KKNIRV--YDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~i--wDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
+ .+..+++|. +-.|.+ |+-...+++ .+-. -..+|+++.+- |-..+|.|..=|.+.+..+
T Consensus 984 t--~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 984 T--YGARIVVGDIQESVHFVRYRREDNQLI-VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred e--cceEEEEeeccceEEEEEEecCCCeEE-EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 5 366788887 444444 454444443 3332 23567776654 4557777766666666554
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.54 E-value=1.6e+02 Score=35.58 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=84.0
Q ss_pred ccCCCeEEEEEe---C----CCCEEEEEeCCeEEEEE------CCCC---------eEEEEEe---CCCCCeEEEEEcCC
Q 005235 537 KLHGLPVSSVFH---P----TRSIFFVSTKKNIRVYD------LLKQ---------RLIKKLE---TGLKEVSSIAIHPA 591 (707)
Q Consensus 537 ~~~~~V~~v~fs---p----d~~~l~v~sdg~I~iwD------l~~~---------~~~~~l~---~~~~~I~sl~~spd 591 (707)
....+|..|+|. . ...+|++-+...+.|+. +... .++..+. .+..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 23578887788888887 2111 2333443 23456788999985
Q ss_pred C-CEEEEEECCCcEEEEECCCC----CcceEEeecCCCCE----------EEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q 005235 592 G-DNLIVGSREGKLCWFDMDLS----SKPYRVLKCHPKDI----------TNVAFHRSYPLFASCSDDCTAYVFHGMVYS 656 (707)
Q Consensus 592 g-~~L~sGs~Dg~I~vwDl~~~----~~~~~~l~~h~~~I----------~~vafspdg~llaSgs~Dg~I~Vwd~~~~~ 656 (707)
. ..||+-...|...|||+... ...+.....+.+.| ..+.|.++...|+.++. ..+.++|+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~---- 231 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDF---- 231 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEEC----
Confidence 4 68999999999999999211 11122222222222 36788888777777754 45777744
Q ss_pred CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
.++.....+. ....... |.++.-+|.
T Consensus 232 --~~~~~~~~l~-~~~~~~~----IlDv~~~~~ 257 (765)
T PF10214_consen 232 --ESNWQTEYLV-TAKTWSW----ILDVKRSPD 257 (765)
T ss_pred --CCCCccchhc-cCCChhh----eeeEEecCC
Confidence 3333211111 1112222 888888776
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.24 E-value=1.3e+02 Score=33.07 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=80.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC----CCCE--EEEEECC----CcEEEEECCCCCcceEE
Q 005235 550 TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP----AGDN--LIVGSRE----GKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 550 d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp----dg~~--L~sGs~D----g~I~vwDl~~~~~~~~~ 618 (707)
...+++... ++-+.+|||. |+.+..+.. +.++.+++-. +|.. |++++.. .+|++|-++.....+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 344555554 7889999997 666666653 3445444421 3433 4444432 46999988643233444
Q ss_pred eecC-------CCCEEEEEE--cC-CCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235 619 LKCH-------PKDITNVAF--HR-SYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687 (707)
Q Consensus 619 l~~h-------~~~I~~vaf--sp-dg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs 687 (707)
+... ...+..+|+ ++ +|. +++....+|.+.-|.+....+ ......+++.|..... +-.|+..
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~--g~v~~~lVR~f~~~sQ-----~EGCVVD 216 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD--GKVSATLVREFKVGSQ-----PEGCVVD 216 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT--SSEEEEEEEEEE-SS------EEEEEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC--CcEeeEEEEEecCCCc-----ceEEEEe
Confidence 4321 123667776 33 455 455667889998886542111 1112245777776543 8889998
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 005235 688 PRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 688 pdg~~L~s~g~Dg~IrlW 705 (707)
....+|+.+-.+--|.-|
T Consensus 217 De~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp TTTTEEEEEETTTEEEEE
T ss_pred cccCCEEEecCccEEEEE
Confidence 888899888777555444
No 474
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.50 E-value=78 Score=38.40 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=46.3
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCeE---EEE----Eec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC
Q 005235 383 PYPVACYLEYKGSTDGTVRIWEVESGRC---LRV----LEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG 450 (707)
Q Consensus 383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~---l~~----l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~ 450 (707)
++...++.++.|+.+|.+.+|.+..... ... ... ..+|+.|..++.- .++.+-.++.|.++.+...
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~--~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASL--ELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchh--cchheecCCcceeeecCcc
Confidence 4445677999999999999999865321 111 111 4677777777776 3666777788888887665
Q ss_pred Cc
Q 005235 451 NE 452 (707)
Q Consensus 451 ~~ 452 (707)
..
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 43
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.25 E-value=21 Score=41.47 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=79.2
Q ss_pred EecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhcccccceeeecc---cccccCCCCcEEEEecCCccceE
Q 005235 414 LEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRRVKDLLHVET---PTAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 414 l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v~~~~~---~~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
.+....+++|.-+|.| ..++.+..|+.|.+|+...... .+.....+...+.| .+.+..++..+..|...+-....
T Consensus 11 ~k~~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqq 89 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQ 89 (1636)
T ss_pred ccccceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccCcchhh
Confidence 3336678889999999 4899999999999999754322 11111111111112 25566677777777655421111
Q ss_pred E---eccCCCeEEEEEcCCC-------------------------CE-EEEEeCCCCccEEEEEECCCCceeeeeeccCC
Q 005235 490 R---LRHFKMVSSVEWHRRG-------------------------DY-LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG 540 (707)
Q Consensus 490 ~---~~h~~~V~~v~~sp~g-------------------------~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~ 540 (707)
+ -.......++...|.. ++ +..++ ...|.+-|++.+... ..+.|.+
T Consensus 90 fdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~----pshvilkdlsn~trt-~l~s~~g 164 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVA----PSHVILKDLSNDTRT-NLISHKG 164 (1636)
T ss_pred ccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEec----cceeeeecccCCceE-eeeecCC
Confidence 0 0001111112111211 11 11111 236777777766554 3334433
Q ss_pred -CeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235 541 -LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR 571 (707)
Q Consensus 541 -~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~ 571 (707)
.|-.+..-...++++.-+..+|.|-|+.+++
T Consensus 165 ~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 165 LAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred cchhhhhhccccceEEeeccccEEEeecccch
Confidence 3444455555566666667788888887764
No 476
>PHA02790 Kelch-like protein; Provisional
Probab=74.82 E-value=1.2e+02 Score=34.47 Aligned_cols=105 Identities=8% Similarity=-0.043 Sum_probs=52.4
Q ss_pred CCCEEEEEeCCC--CccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-C--CeEEEEECCCCeEEE--EE
Q 005235 505 RGDYLSTVMPAG--ESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-K--KNIRVYDLLKQRLIK--KL 576 (707)
Q Consensus 505 ~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d--g~I~iwDl~~~~~~~--~l 576 (707)
++..+++|+.++ ....+..||..+..... .++.....-.+++ .-++.+.++|+ + ..+..||..+++-.. .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 344556666443 12467788887765431 1221111111222 23456666665 2 568889987654322 12
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCC
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLS 612 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~ 612 (707)
.........+++ +|...++|+.++ .+..||..+.
T Consensus 350 ~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 350 LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC
Confidence 111111222222 577778887654 4677887654
No 477
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.82 E-value=28 Score=35.67 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=74.4
Q ss_pred EEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--C--CeEEEEECCC----CeEE---EEEeCCCCCeEEE
Q 005235 520 AIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--K--KNIRVYDLLK----QRLI---KKLETGLKEVSSI 586 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--d--g~I~iwDl~~----~~~~---~~l~~~~~~I~sl 586 (707)
.-.+||+.++... ++ .....+.+-+|-++|.+|.+|+ + ..+++|+... .... ..+ ....|-.+.
T Consensus 47 ~s~~yD~~tn~~r--pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFR--PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEE--eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccc
Confidence 4468888887653 44 4444555567889999999987 3 5699998654 1111 122 234666677
Q ss_pred EEcCCCCEEEEEECCCc-EEEEECCCC-CcceE--Eeec-----CCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 587 AIHPAGDNLIVGSREGK-LCWFDMDLS-SKPYR--VLKC-----HPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 587 ~~spdg~~L~sGs~Dg~-I~vwDl~~~-~~~~~--~l~~-----h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
..-|||+.|++|+.... .-+|.-... ..... .+.. ...---.+...|+|++|+.+..++.|
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i 193 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII 193 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE
Confidence 77889999999887743 344443211 11111 1110 00111245667999999888765533
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.41 E-value=1.8e+02 Score=34.12 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=60.9
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE--EEeCCC-------CCeEEEEEcCCCCEEEEEEC-C-C--
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK--KLETGL-------KEVSSIAIHPAGDNLIVGSR-E-G-- 602 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~--~l~~~~-------~~I~sl~~spdg~~L~sGs~-D-g-- 602 (707)
+....|.++.|.+++..+++.. .|.|.+||...+.... .+.... .-|.........+++++-+. . .
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 6678999999999998888877 8999999994332211 222111 11222221122345555444 2 2
Q ss_pred cEEEEECCCCCcceEEee---cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 005235 603 KLCWFDMDLSSKPYRVLK---CHPKDITNVAFHR-SYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~---~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~ 652 (707)
..+++.+.........+. .+........|.- +|.+..- .+++|.+|.+
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysi 258 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSI 258 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEc
Confidence 356777732223344443 2222223333332 4554433 6778889843
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.32 E-value=1.3e+02 Score=33.38 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 681 VMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+++..+...+|++...+|.|.+|++
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 999999999999999999999999985
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.98 E-value=63 Score=33.90 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=61.0
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE------CCCcEEEEECCCCCcceEEeecC-----CCCEEE
Q 005235 560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS------REGKLCWFDMDLSSKPYRVLKCH-----PKDITN 628 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs------~Dg~I~vwDl~~~~~~~~~l~~h-----~~~I~~ 628 (707)
..|++||..+.+-..--.+-.+.|++|.|..+..++++|. ....+..||+... ....+.+- .++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCCcEEE
Confidence 5699999887654433333446799999986666777764 3456889998754 34445442 367888
Q ss_pred EEEcC-CC-CEEEEEe-CCC--cEEEEecccccCC
Q 005235 629 VAFHR-SY-PLFASCS-DDC--TAYVFHGMVYSDL 658 (707)
Q Consensus 629 vafsp-dg-~llaSgs-~Dg--~I~Vwd~~~~~Dl 658 (707)
+.+.. ++ .++++|. .+| .|..||...+..+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 87743 33 3454443 333 5777877655444
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.74 E-value=83 Score=39.17 Aligned_cols=68 Identities=7% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 540 GLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
..+.++.+....+.++...-+.+-+|+.........+..... .++++|..++++..||.+.+||...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 199 YESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCC
Confidence 344455554445555555556666666544332222222211 12788999999999999999999865
No 482
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=83 Score=31.35 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccC-CCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC-CC
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLH-GLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET-GL 580 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~-~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~-~~ 580 (707)
+|.++.+.+.-| ...|++|++.+++.. ..-... ..+..=-...-+..+..-+ ++.-..||..+.+++..+.- +.
T Consensus 55 ~g~i~esTG~yg-~S~ir~~~L~~gq~~-~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 55 DGHILESTGLYG-FSKIRVSDLTTGQEI-FSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred CCEEEEeccccc-cceeEEEeccCceEE-EEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 556677766655 569999999988765 222111 1111111112244444444 89999999998887766653 22
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
+| .+ ..++..|+.++...++++-|..+
T Consensus 133 GW--gL--t~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 133 GW--GL--TSDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ce--ee--ecCCcceEeeCCceEEEecCHHH
Confidence 32 33 34677788777666777777654
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.85 E-value=1.2e+02 Score=31.15 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=82.5
Q ss_pred EEEEecCCccceEE-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-C-ceeeee----eccCCCeEEEEEeC
Q 005235 477 IVSWLQHDKLDGIR-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-K-LSHRIP----FKLHGLPVSSVFHP 549 (707)
Q Consensus 477 i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~-~~~~~~----~~~~~~V~~v~fsp 549 (707)
-.+||..+.....+ .....-+.+-++-++|+.|.+|+...+.+.+++++... . .+.... +.....--.+..-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777776555432 22333344456778999999998766677899988654 1 111011 23344455666778
Q ss_pred CCCEEEEEe--CCeEEEEECCC--CeEEE-EEeC------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235 550 TRSIFFVST--KKNIRVYDLLK--QRLIK-KLET------GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 550 d~~~l~v~s--dg~I~iwDl~~--~~~~~-~l~~------~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~ 618 (707)
||+.|++|+ ..+..+|.-.. ..... .+.. ....--.+.+.|+|+.++.+..+ -.|||..+. +.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999987 34556665422 11111 1111 11222356678999999988764 456688765 44455
Q ss_pred eec
Q 005235 619 LKC 621 (707)
Q Consensus 619 l~~ 621 (707)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 543
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.34 E-value=1.6e+02 Score=32.36 Aligned_cols=188 Identities=11% Similarity=0.190 Sum_probs=100.6
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe----CCCCE--EEEEeC-----CeEEEEECC--CC
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH----PTRSI--FFVSTK-----KNIRVYDLL--KQ 570 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs----pd~~~--l~v~sd-----g~I~iwDl~--~~ 570 (707)
|...+++.....+ .+.+||+.....+ .+. .+.++.|..- -.+.. |+++++ .+|++|-+. ++
T Consensus 66 p~kSlIigTdK~~---GL~VYdL~Gk~lq--~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKG---GLYVYDLDGKELQ--SLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTT---EEEEEETTS-EEE--EE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCC---CEEEEcCCCcEEE--eec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 3445677777666 8999999887665 221 2333333221 13333 556652 469999775 34
Q ss_pred eEEEEEeC-------CCCCeEEEEE--cC-CCC-EEEEEECCCcEEEEECCCC-C-----cceEEeecCCCCEEEEEEcC
Q 005235 571 RLIKKLET-------GLKEVSSIAI--HP-AGD-NLIVGSREGKLCWFDMDLS-S-----KPYRVLKCHPKDITNVAFHR 633 (707)
Q Consensus 571 ~~~~~l~~-------~~~~I~sl~~--sp-dg~-~L~sGs~Dg~I~vwDl~~~-~-----~~~~~l~~h~~~I~~vafsp 633 (707)
. +..+.. ....+..+|+ +| +|. ++++...+|.+.-|-+... . ++++.|.. ...+..|+...
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDD 217 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEec
Confidence 3 333322 2234667776 33 354 5667788898887776421 1 35666664 34788899988
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC--CCCCCCCCeeEEEEc--CCCC-EE-EEEeCCCcEEEEeC
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG--HTSSNGRGVMDCKFH--PRQP-WL-FTAGADSVIRLYCH 707 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g--h~~~~~~gV~~l~fs--pdg~-~L-~s~g~Dg~IrlWdl 707 (707)
....|..|-.+--|.-|+.. .........+....+ .... |-.|+.- .++. || +|.-.+++..||+.
T Consensus 218 e~g~LYvgEE~~GIW~y~Ae----p~~~~~~~~v~~~~g~~l~aD----vEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAE----PEGGNDRTLVASADGDGLVAD----VEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp TTTEEEEEETTTEEEEEESS----CCC-S--EEEEEBSSSSB-S-----EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred ccCCEEEecCccEEEEEecC----CCCCCcceeeecccccccccC----ccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 88888888888766666542 112221112322323 1222 6666663 3433 44 55556778888863
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.31 E-value=17 Score=25.18 Aligned_cols=25 Identities=8% Similarity=0.305 Sum_probs=18.0
Q ss_pred eeEEEEcCCCCEEEEE-eCC--CcEEEE
Q 005235 681 VMDCKFHPRQPWLFTA-GAD--SVIRLY 705 (707)
Q Consensus 681 V~~l~fspdg~~L~s~-g~D--g~IrlW 705 (707)
-...+|||||++|+-+ ..+ |.-.||
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 7788999999988554 455 677666
No 486
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=70.18 E-value=2.6e+02 Score=34.04 Aligned_cols=206 Identities=13% Similarity=0.133 Sum_probs=98.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc--eee------eeecc-CCCeEEEEEe--CCCCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL--SHR------IPFKL-HGLPVSSVFH--PTRSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~--~~~------~~~~~-~~~V~~v~fs--pd~~~l~v~s-dg~I 562 (707)
..+..+......+.++..+..|.--.+..+++.... .+. ..+.. ..-+.++.+. .+...++..+ +|.+
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVV 614 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEE
Confidence 344444444555666666666622233333333321 110 11222 2234444432 2344555555 8999
Q ss_pred EEEECCCC-------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---C---cceEEeec-CCCCEEE
Q 005235 563 RVYDLLKQ-------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---S---KPYRVLKC-HPKDITN 628 (707)
Q Consensus 563 ~iwDl~~~-------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---~---~~~~~l~~-h~~~I~~ 628 (707)
+-.++..- ....++..+ ..+..+......+.|+..+..|.+..+....- + .-...+.- -...|.+
T Consensus 615 KRi~l~~~~~~~r~G~~aiklke~-D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~ 693 (800)
T TIGR01063 615 KKTSLTEFSNIRSNGIIAIKLDDG-DELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVS 693 (800)
T ss_pred EEEEhHHhhhhccCCcccccCCCC-CEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEE
Confidence 98876432 112223333 33444434445567888888898877765421 0 11111111 1233444
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+..-.+...++..+..|.++...+..+..............+...... +..+........++..+.+|.+..+
T Consensus 694 ~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~----lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 694 LLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQ----VVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred EEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCe----EEEEEEecCCCeEEEEecCCeEEEe
Confidence 444444557888889999998876543222211111112223332222 4444444444556666777766444
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.96 E-value=46 Score=39.43 Aligned_cols=141 Identities=8% Similarity=0.034 Sum_probs=87.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE-EEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESGRCL-RVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l-~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+..|+.++.+-|+...++... ..... ...+.++.+++.. +.++..+|++-.+--.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~ra---------------- 609 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRA---------------- 609 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCC----------------
Confidence 4567788888888876633222 11111 5678888888765 7777788876554311
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHG 540 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~ 540 (707)
.+++ |+.+ . .........+|...++..+ ++.++.+| .|.|+...+.... ... .+..
T Consensus 610 --------p~gS---wd~e-p-~~~~~~g~lPvrsla~~ed---~~was~gG---~V~vi~~tt~~~~-~~leahqee~~ 669 (925)
T KOG3522|consen 610 --------PSGS---WDGE-P-NISIPTGSLPVRSLAFQED---FVWASEGG---CVHVIPSTTFIRS-WDLEAHQEEAH 669 (925)
T ss_pred --------CCCC---CCCC-C-ccccccCCccccchhhhhc---eeeeecCC---ceEEEechhcccc-chhHHHHhhcc
Confidence 1111 5443 1 1112233556777776543 44555666 8999988776554 333 5567
Q ss_pred CeEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 005235 541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLK 569 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~ 569 (707)
.|+++....++-+++.++...+++++..+
T Consensus 670 ~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 670 SVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred eEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 89999999888887777777777776554
No 488
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.92 E-value=1.1e+02 Score=34.58 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCCccEEEEEECCCCce
Q 005235 495 KMVSSVEWHRRG---DYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 495 ~~V~~v~~sp~g---~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
-.+..++|||+. ..|...+.|. .|+||+++....
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdn---viRiy~lS~~te 202 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDN---VIRIYSLSEPTE 202 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCc---EEEEEecCCcch
Confidence 357789999976 5777777777 999999987543
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.73 E-value=82 Score=39.34 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=81.5
Q ss_pred EEEEEECCCCceeeeee-ccCCCeEEEEEe-C-------C-CCEEEEEeCCeEEEEECCC----CeE---E--EEEeCCC
Q 005235 520 AIFMHQLSKKLSHRIPF-KLHGLPVSSVFH-P-------T-RSIFFVSTKKNIRVYDLLK----QRL---I--KKLETGL 580 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs-p-------d-~~~l~v~sdg~I~iwDl~~----~~~---~--~~l~~~~ 580 (707)
.+.+|+..++... ..+ +....|..|..- | . ..+|++++--.|.|+-+.. +.. . .++....
T Consensus 100 ~L~lWny~~~~e~-~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg 178 (1311)
T KOG1900|consen 100 NLFLWNYESDNEL-AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDG 178 (1311)
T ss_pred eEEEEEcCCCCcc-ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCC
Confidence 8999999986655 556 666666666542 2 2 2346667766676665432 111 1 2222333
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEE--EEECCCC---Ccc-----------------eEEeecCCCCEEEEEEcCCCCEE
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLC--WFDMDLS---SKP-----------------YRVLKCHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~--vwDl~~~---~~~-----------------~~~l~~h~~~I~~vafspdg~ll 638 (707)
-.|+|+....+|+.+++|- ||.|+ +|....+ .++ .+....+..+|..++....-.++
T Consensus 179 ~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred ceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 5588999888888777664 45432 1111110 001 11112556799999998888899
Q ss_pred EEEeCCCcEEEEecc
Q 005235 639 ASCSDDCTAYVFHGM 653 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~ 653 (707)
.+-+.-|+|.+|++.
T Consensus 258 Y~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIG 272 (1311)
T ss_pred eeeccCceEEEEEcc
Confidence 999999999999654
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.69 E-value=21 Score=24.91 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEE
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAW 425 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~ 425 (707)
++++...+++|.++|..+++.+..+........++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 455556788999999999999888877555555555
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.38 E-value=37 Score=42.17 Aligned_cols=156 Identities=8% Similarity=0.169 Sum_probs=87.6
Q ss_pred EEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEE--------cCCCCEEEEEECCCcEEEEECCCCC--c
Q 005235 545 SVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAI--------HPAGDNLIVGSREGKLCWFDMDLSS--K 614 (707)
Q Consensus 545 v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~--------spdg~~L~sGs~Dg~I~vwDl~~~~--~ 614 (707)
+-+-|.=...-..-|+.+.+|+..++.....+.+-...|..+.. -|.=+++++-..--.|.++-+.... .
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccC
Confidence 33444444455555999999999986555555554445544432 2222444444444455555432211 0
Q ss_pred ceEE------eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc--cccCCCCC----------C--cccc-eEEee-C
Q 005235 615 PYRV------LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM--VYSDLNQN----------P--LIVP-LEILR-G 672 (707)
Q Consensus 615 ~~~~------l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~--~~~Dl~~~----------~--~~~p-l~~l~-g 672 (707)
.... +......|+++....+|+.|.+|-++ .||.+. ..+..... . .++| +-.+. +
T Consensus 164 ~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 164 ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred cccccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 1111 22224568899988899988887655 344321 11111110 0 0001 11222 4
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 673 HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 673 h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+..+ |..++.......|.+-+..|+|++|++
T Consensus 241 ~~dp----I~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 241 SKDP----IRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CCCc----ceeeEeccccceeeeeccCceEEEEEc
Confidence 4444 999999888889999999999999986
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.96 E-value=46 Score=28.38 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred ccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe
Q 005235 518 SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 518 ~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s 558 (707)
.+.+..||..+++.. ..+..-...+.|++++++.+++++-
T Consensus 36 ~GRll~ydp~t~~~~-vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETT-VLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEE-EEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEE-EehhCCCccCeEEEcCCCCEEEEEe
Confidence 458999999998764 3345556789999999999998885
No 493
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.65 E-value=1.6e+02 Score=30.66 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=126.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
++.+-|++...|.|---|..||+....--. ...-..|..-|||. ...+-....|.-++.++.
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~--~Witd~~~aI~R~dpkt~--------------- 134 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS--AWITDTGLAIGRLDPKTL--------------- 134 (353)
T ss_pred CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC--eeEecCcceeEEecCccc---------------
Confidence 344666666666666667777776533222 56667777788873 222222224444444332
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------CccEEEEEECCCCceeeeeeccC
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------ESRAIFMHQLSKKLSHRIPFKLH 539 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------~~~~V~Iwdl~~~~~~~~~~~~~ 539 (707)
.+..|-+. ...-........|.+.|..-+++...- ..+.|.+|... ..
T Consensus 135 ----------evt~f~lp------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG 188 (353)
T COG4257 135 ----------EVTRFPLP------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QG 188 (353)
T ss_pred ----------ceEEeecc------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CC
Confidence 22233221 112345677888999998888776321 12244444432 34
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~ 615 (707)
.....++..|+|..-++.- ++.|-..|..++.. ..+... ......+-.+|.|..-++-...+.+.-||.....=.
T Consensus 189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred CCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce
Confidence 4567889999998877765 77788888776622 222211 123445566788888888888888888887653211
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
-..|.+....-.++.....++.-.+-..-|.|.-||
T Consensus 268 eypLPgs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 268 EYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred eeeCCCCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 122333334445566666666555555556666663
No 494
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=67.10 E-value=1.4e+02 Score=35.09 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=78.7
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC------CCc--
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR------EGK-- 603 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~------Dg~-- 603 (707)
.....+..+.|+|++..++..+ + ..+.+.+.. + .+......+....|+|.|..++.... ++.
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 5667788889999999988876 3 334555544 3 23333455778889999988877311 221
Q ss_pred -----E-EEEECCCCC-c---------ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecccccCCCCCCc
Q 005235 604 -----L-CWFDMDLSS-K---------PYRVLKCHPKDITNVAFHRSYPLFASCSDDCT----AYVFHGMVYSDLNQNPL 663 (707)
Q Consensus 604 -----I-~vwDl~~~~-~---------~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~----I~Vwd~~~~~Dl~~~~~ 663 (707)
+ .+|+.+.+. . ...........+...++++++..+++...+.. +.-+... .. .+.
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~- 206 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVL---IE-GNG- 206 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEE---ec-CCC-
Confidence 2 233332201 1 11122233445666777777777776654443 2222111 11 111
Q ss_pred ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 664 IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 664 ~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
.+..+...... +..+.|.++++.++..+
T Consensus 207 --~~~~~~~~~~~----~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 207 --ELESLTPGEGS----ISKLAFDADGKSIALLG 234 (620)
T ss_pred --ceEEEcCCCce----eeeeeeCCCCCeeEEec
Confidence 13344444333 88899999998655443
No 495
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.91 E-value=2.2e+02 Score=31.64 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=25.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
....+.+++.+|.+++.|+...=|.|.++|+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~ 337 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVA 337 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 34457889999999988887777999999654
No 496
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=63.38 E-value=2.7e+02 Score=31.71 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCcEEEEEeC--CCcEEEEeCCCCeEEEEEecCCcEEEEEEccC---CCc------cEEEEEeCCeEEE
Q 005235 376 PSRKDLKPYPVACYLEYKGST--DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL---PEL------PVLAVSVGQDVLI 444 (707)
Q Consensus 376 p~~~~l~pfp~~~~~l~sgs~--DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spd---g~~------~lla~s~d~~V~l 444 (707)
+.+..+..+.....+++.||. |+.+.-|....-+++.++..-++|..++..+. +.. .+++++..+.
T Consensus 256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~--- 332 (504)
T PF10433_consen 256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK--- 332 (504)
T ss_dssp S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGG---
T ss_pred ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCC---
Q ss_pred EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc--eEEeccCCCeEEEEEcCC----CCEEEEEeCCCCc
Q 005235 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD--GIRLRHFKMVSSVEWHRR----GDYLSTVMPAGES 518 (707)
Q Consensus 445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~V~~v~~sp~----g~~lat~s~dg~~ 518 (707)
+|.+++....-... .....--..+..+=--+. +.||+....+
T Consensus 333 -----------------------------~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~--- 380 (504)
T PF10433_consen 333 -----------------------------RGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN--- 380 (504)
T ss_dssp -----------------------------G-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS---
T ss_pred -----------------------------CCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC---
Q ss_pred cEEEEEECC--CCceeee------ee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCC-eEEEEE
Q 005235 519 RAIFMHQLS--KKLSHRI------PF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKE-VSSIAI 588 (707)
Q Consensus 519 ~~V~Iwdl~--~~~~~~~------~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~-I~sl~~ 588 (707)
.-+++.+. ..... . .| .....+.+-.+. +..++=.+...|++.++..++.........+. |.+.++
T Consensus 381 -~T~vl~~~~~d~~e~-~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~ 456 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEE-VEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASI 456 (504)
T ss_dssp -EEEEEEES----SSE-EEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEE
T ss_pred -ceEEEEEecccCCcc-hhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEE
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcC
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHR 633 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafsp 633 (707)
. +.+++++..++.+..+.++........... ....|.|+..+|
T Consensus 457 ~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 457 N--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred C--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.14 E-value=27 Score=24.19 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEE
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWF 607 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vw 607 (707)
.+........+.+|||||+.|+..+.. |...||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455667889999999988876653 444444
No 498
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=62.35 E-value=2.9e+02 Score=31.75 Aligned_cols=293 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC--CCchhcccccceeeecc
Q 005235 391 EYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL--GNEEEQRRVKDLLHVET 466 (707)
Q Consensus 391 l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~--~~~~~~~~~~~v~~~~~ 466 (707)
+..|+.|| +..+|..+|+.+..-.. ...|..+.-.-+| -+-++.+.-|.+.+... ....-.......+....
T Consensus 178 lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg---~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~ 253 (671)
T COG3292 178 LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG---RLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLV 253 (671)
T ss_pred EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC---cEEEEeccceEEEchhhccccccCCCCcchheeeee
Q ss_pred c-----ccccCCCCcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 467 P-----TAPDDNMASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 467 ~-----~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
. +..++..|-.+.-....+.... ...--+.|.++....+|..-+.... .+.-+........ ..+
T Consensus 254 qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~-----giv~~~~a~w~~m-a~in~ 327 (671)
T COG3292 254 QDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYG-----GIVRYLTADWKRM-AVIND 327 (671)
T ss_pred cccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccC-----ceEEEecchhhhe-eeeec
Q ss_pred ccCCCeEEEEEeC---CCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-C
Q 005235 537 KLHGLPVSSVFHP---TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-S 612 (707)
Q Consensus 537 ~~~~~V~~v~fsp---d~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-~ 612 (707)
...+.+..++..| .......-+-+.+.+-+-.++..+.....-.+.+-....-..+..+-.|+...-+..|+..+ +
T Consensus 328 ~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~ 407 (671)
T COG3292 328 SDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEW 407 (671)
T ss_pred CCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcc
Q ss_pred CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP- 691 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~- 691 (707)
...-..-.-..+.|.++.=.|+++ |..|+.+|.++. +...... .+.-.+..|....+. |..+...|+|+
T Consensus 408 avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-------~pe~~~v-~n~ln~~~~~l~~s~-~~~lg~~~~g~L 477 (671)
T COG3292 408 AVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-------DPESGRV-LNLLNPGSHGLDGSR-VEQLGLGPDGRL 477 (671)
T ss_pred cccccccCCcccceeeeeecCCCC-EEEeccCCeEec-------Cccccch-hcccccccCcCCcch-hhhhccCCCCce
Q ss_pred EEEEEeCCCcEEEEe
Q 005235 692 WLFTAGADSVIRLYC 706 (707)
Q Consensus 692 ~L~s~g~Dg~IrlWd 706 (707)
||++|+ .|..|+
T Consensus 478 w~a~g~---gva~~~ 489 (671)
T COG3292 478 WLAAGS---GVAAWE 489 (671)
T ss_pred EEEecc---eeeeec
No 499
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=61.95 E-value=31 Score=39.80 Aligned_cols=37 Identities=11% Similarity=0.347 Sum_probs=27.6
Q ss_pred CeEEEEEeC----CCCEEEEEe-CCeEEEEECCCCeEEEEEe
Q 005235 541 LPVSSVFHP----TRSIFFVST-KKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 541 ~V~~v~fsp----d~~~l~v~s-dg~I~iwDl~~~~~~~~l~ 577 (707)
.+..++++. +..+|++.+ |+++|+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 455666666 677888877 9999999999999977654
No 500
>PRK13613 lipoprotein LpqB; Provisional
Probab=61.93 E-value=3.2e+02 Score=32.06 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce----eeeeeccCCCeEEEEEeCCCCEEEEEe---CC--eEEEEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS----HRIPFKLHGLPVSSVFHPTRSIFFVST---KK--NIRVYD 566 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~----~~~~~~~~~~V~~v~fspd~~~l~v~s---dg--~I~iwD 566 (707)
.+.+++.++++..+|....++ ..+.+..+..+.. . ...-....++.-.|.+++ .+-+.. ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--~~l~vg~~~~~~~~~~~~-~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--DSVYVGSLTPGASIGVHS-WGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--cEEEEeccCCCCcccccc-ceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 677889999999988887654 4677766543332 1 122112335566676666 333331 12 255554
Q ss_pred CCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CCc-ce---EEeecCCCCEEEEEEcCCC
Q 005235 567 LLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDL--SSK-PY---RVLKCHPKDITNVAFHRSY 635 (707)
Q Consensus 567 l~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~--~~~-~~---~~l~~h~~~I~~vafspdg 635 (707)
- +++... ........|+.+.+|+||-.++.-.. .++|.|=-+.. ... .+ ..+..-...+.+++|..++
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Confidence 3 343321 11111136999999999987766443 24454433321 111 11 1122223358999999999
Q ss_pred CEEEEEe-CCCcEEEEeccc
Q 005235 636 PLFASCS-DDCTAYVFHGMV 654 (707)
Q Consensus 636 ~llaSgs-~Dg~I~Vwd~~~ 654 (707)
.+++.+. .++...+|.+.+
T Consensus 519 sL~Vlg~~~~~~~~v~~v~v 538 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQV 538 (599)
T ss_pred EEEEEeccCCCCcceEEEec
Confidence 9877553 444666775543
Done!