Query 005235
Match_columns 707
No_of_seqs 846 out of 4383
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 19:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 5.7E-41 2E-45 388.7 43.9 386 288-707 52-609 (611)
2 1nr0_A Actin interacting prote 100.0 2.3E-39 8E-44 375.2 44.1 352 297-707 25-565 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 3.9E-39 1.3E-43 368.1 45.0 345 290-706 216-577 (577)
4 1vyh_C Platelet-activating fac 100.0 2.3E-39 7.8E-44 356.7 40.5 266 389-707 121-409 (410)
5 3ow8_A WD repeat-containing pr 100.0 5.1E-39 1.8E-43 342.2 41.4 267 388-707 48-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 3.8E-38 1.3E-42 337.6 42.5 268 389-706 68-340 (340)
7 2pbi_B Guanine nucleotide-bind 100.0 3.3E-37 1.1E-41 332.7 42.8 271 389-706 77-354 (354)
8 2ymu_A WD-40 repeat protein; u 100.0 2.6E-37 8.8E-42 353.0 44.1 339 297-707 187-537 (577)
9 4gqb_B Methylosome protein 50; 100.0 5.8E-38 2E-42 337.8 35.1 269 387-707 41-329 (344)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-37 9.3E-42 331.9 39.5 279 389-707 29-333 (345)
11 2ynn_A Coatomer subunit beta'; 100.0 1.3E-36 4.5E-41 320.5 40.2 266 389-707 26-300 (304)
12 3iz6_a 40S ribosomal protein R 100.0 3.6E-37 1.2E-41 335.4 32.4 301 325-707 51-373 (380)
13 4g56_B MGC81050 protein; prote 100.0 9.8E-37 3.4E-41 329.5 35.2 268 389-707 55-341 (357)
14 2hes_X YDR267CP; beta-propelle 100.0 7.7E-36 2.6E-40 318.5 38.1 275 390-707 26-326 (330)
15 1erj_A Transcriptional repress 100.0 1.8E-35 6.3E-40 323.4 41.1 268 387-707 75-387 (393)
16 3frx_A Guanine nucleotide-bind 100.0 3E-35 1E-39 312.4 40.3 263 389-707 31-315 (319)
17 1vyh_C Platelet-activating fac 100.0 5.1E-36 1.8E-40 329.9 34.5 280 287-652 100-409 (410)
18 4ery_A WD repeat-containing pr 100.0 1.2E-34 4.2E-39 305.2 43.0 266 389-707 36-310 (312)
19 4aez_A CDC20, WD repeat-contai 100.0 2.9E-35 9.9E-40 322.2 39.5 317 338-707 25-378 (401)
20 2xzm_R RACK1; ribosome, transl 100.0 1.4E-34 4.9E-39 310.0 42.6 275 387-707 38-338 (343)
21 1r5m_A SIR4-interacting protei 100.0 7E-35 2.4E-39 317.3 36.0 306 390-707 60-423 (425)
22 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-35 9.2E-40 355.6 35.8 303 389-707 70-659 (902)
23 1gxr_A ESG1, transducin-like e 100.0 6E-34 2E-38 300.3 40.8 264 389-707 64-335 (337)
24 3ow8_A WD repeat-containing pr 100.0 1E-34 3.5E-39 309.0 34.8 224 389-652 93-319 (321)
25 1pgu_A Actin interacting prote 100.0 1.6E-34 5.5E-39 331.2 38.9 388 288-707 56-612 (615)
26 2ynn_A Coatomer subunit beta'; 100.0 3.8E-34 1.3E-38 301.6 37.8 245 411-707 6-257 (304)
27 1got_B GT-beta; complex (GTP-b 100.0 2.8E-34 9.5E-39 307.6 37.1 277 288-651 48-340 (340)
28 2pm9_A Protein WEB1, protein t 100.0 2E-36 6.9E-41 330.1 20.4 309 389-707 26-412 (416)
29 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-35 2E-39 364.2 36.3 357 288-707 608-1156(1249)
30 4gqb_B Methylosome protein 50; 100.0 1.2E-34 4E-39 312.0 33.2 222 390-652 95-329 (344)
31 3zwl_B Eukaryotic translation 100.0 3.1E-33 1E-37 298.4 42.5 265 389-707 45-344 (369)
32 4aow_A Guanine nucleotide-bind 100.0 2.2E-33 7.6E-38 297.1 40.4 274 389-707 52-335 (340)
33 3vl1_A 26S proteasome regulato 100.0 1E-34 3.6E-39 317.6 29.3 314 384-707 64-417 (420)
34 1sq9_A Antiviral protein SKI8; 100.0 1.5E-33 5E-38 305.8 34.9 269 390-707 28-393 (397)
35 1pgu_A Actin interacting prote 100.0 6.3E-33 2.1E-37 318.0 40.1 349 296-707 24-570 (615)
36 4g56_B MGC81050 protein; prote 100.0 4.8E-34 1.7E-38 308.4 28.5 223 390-653 107-342 (357)
37 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-33 1.3E-37 299.2 35.1 278 388-707 20-359 (372)
38 3i2n_A WD repeat-containing pr 100.0 2.6E-33 8.8E-38 298.3 33.2 277 389-707 32-351 (357)
39 3dm0_A Maltose-binding peripla 100.0 8.9E-33 3E-37 324.4 40.9 269 388-707 395-691 (694)
40 3k26_A Polycomb protein EED; W 100.0 1.4E-33 4.8E-38 301.0 30.0 269 389-707 35-364 (366)
41 3ei3_B DNA damage-binding prot 100.0 1E-32 3.5E-37 298.9 36.9 263 389-707 87-380 (383)
42 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-33 3.3E-37 344.1 41.2 314 384-707 623-1032(1249)
43 3gre_A Serine/threonine-protei 100.0 3.1E-33 1.1E-37 308.4 32.6 316 296-706 33-437 (437)
44 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-31 5.3E-36 279.1 41.7 260 389-707 30-294 (313)
45 4h5i_A Guanine nucleotide-exch 100.0 1.2E-32 4E-37 298.6 34.3 279 413-707 10-341 (365)
46 2pbi_B Guanine nucleotide-bind 100.0 2E-32 6.8E-37 295.2 35.2 277 288-651 57-354 (354)
47 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-32 6.4E-37 330.7 38.3 307 389-707 30-603 (902)
48 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-32 8.6E-37 293.1 34.5 260 409-707 6-281 (345)
49 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.8E-32 1.7E-36 300.3 37.8 290 389-707 130-440 (445)
50 2j04_B YDR362CP, TAU91; beta p 100.0 7.1E-34 2.4E-38 322.7 22.4 302 385-707 170-515 (524)
51 4ery_A WD repeat-containing pr 100.0 6.9E-32 2.3E-36 284.1 35.7 279 287-652 15-310 (312)
52 3dwl_C Actin-related protein 2 100.0 1.3E-33 4.4E-38 304.7 21.8 280 386-707 21-377 (377)
53 2pm7_B Protein transport prote 100.0 7.5E-32 2.6E-36 283.0 34.0 245 417-707 9-283 (297)
54 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-31 1.2E-35 314.9 41.7 324 343-707 9-384 (814)
55 4gga_A P55CDC, cell division c 100.0 2.6E-31 9.1E-36 292.7 37.6 263 389-707 117-393 (420)
56 3v7d_B Cell division control p 100.0 3.8E-31 1.3E-35 294.0 38.7 290 389-705 133-459 (464)
57 1r5m_A SIR4-interacting protei 100.0 8.9E-32 3.1E-36 292.7 32.1 291 398-707 25-359 (425)
58 2hes_X YDR267CP; beta-propelle 100.0 5E-31 1.7E-35 281.2 36.6 257 406-707 2-278 (330)
59 3iz6_a 40S ribosomal protein R 100.0 3E-32 1E-36 296.5 27.5 263 398-707 46-327 (380)
60 4ggc_A P55CDC, cell division c 100.0 2E-30 6.9E-35 271.6 40.4 262 390-707 38-313 (318)
61 1gxr_A ESG1, transducin-like e 100.0 1.3E-30 4.6E-35 274.6 39.1 269 389-707 22-294 (337)
62 3zwl_B Eukaryotic translation 100.0 9.1E-31 3.1E-35 279.2 37.8 289 289-653 26-345 (369)
63 2pm9_A Protein WEB1, protein t 100.0 2.5E-32 8.4E-37 297.7 26.1 274 418-707 13-335 (416)
64 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-31 4.5E-36 318.5 33.9 346 290-706 8-420 (814)
65 3vl1_A 26S proteasome regulato 100.0 5.8E-32 2E-36 295.8 28.0 271 419-707 58-363 (420)
66 1erj_A Transcriptional repress 100.0 8.8E-31 3E-35 286.2 37.2 270 410-707 57-339 (393)
67 3frx_A Guanine nucleotide-bind 100.0 1E-30 3.4E-35 277.5 35.9 247 411-707 10-265 (319)
68 2xzm_R RACK1; ribosome, transl 100.0 4.9E-31 1.7E-35 282.5 32.9 285 289-653 15-339 (343)
69 4e54_B DNA damage-binding prot 100.0 4.5E-32 1.5E-36 300.4 25.2 269 387-707 131-428 (435)
70 1yfq_A Cell cycle arrest prote 100.0 1.1E-30 3.8E-35 276.9 33.7 255 389-701 24-315 (342)
71 3dw8_B Serine/threonine-protei 100.0 4.8E-31 1.6E-35 290.7 31.7 298 387-706 39-443 (447)
72 4a11_B DNA excision repair pro 100.0 5.3E-31 1.8E-35 285.4 30.0 283 395-707 20-363 (408)
73 1p22_A F-BOX/WD-repeat protein 100.0 4.3E-30 1.5E-34 284.1 36.9 266 387-707 142-412 (435)
74 3bg1_A Protein SEC13 homolog; 100.0 1.8E-31 6.1E-36 282.9 22.8 246 417-707 13-291 (316)
75 2pm7_B Protein transport prote 100.0 9.1E-30 3.1E-34 267.1 33.8 229 388-652 21-283 (297)
76 3jrp_A Fusion protein of prote 100.0 4.9E-30 1.7E-34 274.9 31.8 255 408-707 1-285 (379)
77 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.2E-34 266.2 33.8 298 341-707 5-335 (351)
78 3bg1_A Protein SEC13 homolog; 100.0 4.6E-30 1.6E-34 272.0 27.4 228 389-652 26-291 (316)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.6E-29 1.2E-33 277.2 35.6 302 290-653 113-441 (445)
80 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-30 1.1E-34 275.9 26.2 266 386-705 46-329 (343)
81 3mmy_A MRNA export factor; mRN 100.0 5.1E-29 1.8E-33 265.5 35.3 262 389-705 55-342 (368)
82 1sq9_A Antiviral protein SKI8; 100.0 1.6E-29 5.6E-34 273.9 30.9 229 389-653 82-394 (397)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-30 2E-34 279.7 26.8 274 388-707 47-340 (402)
84 2xyi_A Probable histone-bindin 100.0 4.5E-29 1.6E-33 275.9 33.6 266 411-707 122-408 (430)
85 4a11_B DNA excision repair pro 100.0 2.8E-29 9.6E-34 271.8 31.0 299 389-707 57-403 (408)
86 3gre_A Serine/threonine-protei 100.0 5.4E-30 1.8E-34 282.5 24.6 277 380-707 31-357 (437)
87 4h5i_A Guanine nucleotide-exch 100.0 8.1E-29 2.8E-33 268.3 32.3 259 387-653 25-342 (365)
88 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-30 1.9E-34 290.7 22.8 267 407-707 123-426 (524)
89 3dm0_A Maltose-binding peripla 100.0 2.1E-28 7.3E-33 287.2 36.0 246 413-707 377-630 (694)
90 1k8k_C P40, ARP2/3 complex 41 100.0 1E-28 3.5E-33 264.6 29.8 241 417-707 8-272 (372)
91 4aow_A Guanine nucleotide-bind 100.0 6.6E-28 2.2E-32 254.9 35.4 252 407-707 27-284 (340)
92 3v7d_B Cell division control p 100.0 8.6E-28 2.9E-32 267.0 37.8 270 412-707 115-419 (464)
93 3dwl_C Actin-related protein 2 100.0 2.9E-30 9.8E-35 278.4 17.1 241 417-706 11-278 (377)
94 3k26_A Polycomb protein EED; W 100.0 1.3E-28 4.4E-33 262.6 29.1 251 417-707 18-316 (366)
95 3ei3_B DNA damage-binding prot 100.0 2.3E-28 7.7E-33 264.6 31.1 256 402-707 57-337 (383)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.5E-28 2.2E-32 268.0 35.6 274 384-707 12-389 (450)
97 3vu4_A KMHSV2; beta-propeller 100.0 3.9E-28 1.3E-32 261.8 32.4 290 402-707 3-334 (355)
98 4aez_A CDC20, WD repeat-contai 100.0 4.4E-28 1.5E-32 265.1 33.0 224 389-653 147-379 (401)
99 1l0q_A Surface layer protein; 100.0 4E-27 1.4E-31 255.1 39.4 262 389-707 3-273 (391)
100 3dw8_B Serine/threonine-protei 100.0 1.4E-28 4.8E-33 270.9 28.1 255 416-707 27-371 (447)
101 3jrp_A Fusion protein of prote 100.0 5E-28 1.7E-32 259.2 29.6 229 389-653 24-286 (379)
102 3i2n_A WD repeat-containing pr 100.0 8.7E-28 3E-32 255.5 28.9 244 416-707 17-289 (357)
103 4gga_A P55CDC, cell division c 100.0 8.5E-27 2.9E-31 256.6 36.7 224 389-653 160-394 (420)
104 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.9E-32 250.9 29.8 269 390-707 55-355 (356)
105 1yfq_A Cell cycle arrest prote 100.0 1.1E-27 3.9E-32 253.6 26.7 247 417-707 11-280 (342)
106 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-26 5.7E-31 240.9 35.2 238 409-707 9-253 (313)
107 3jro_A Fusion protein of prote 100.0 6.6E-28 2.3E-32 286.0 27.6 246 417-707 9-283 (753)
108 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-28 1.3E-32 271.6 23.2 256 417-707 15-295 (588)
109 4ggc_A P55CDC, cell division c 100.0 2.3E-26 7.7E-31 240.7 35.4 271 296-653 31-314 (318)
110 4e54_B DNA damage-binding prot 100.0 9.4E-28 3.2E-32 265.7 25.5 245 417-707 119-385 (435)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-27 1.2E-31 257.6 29.0 239 421-707 38-297 (402)
112 3bws_A Protein LP49; two-domai 100.0 5.2E-26 1.8E-30 249.8 37.1 265 387-707 133-430 (433)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-26 4.7E-31 257.3 30.8 272 418-707 5-337 (450)
114 2xyi_A Probable histone-bindin 100.0 1.2E-26 4E-31 256.5 29.6 239 384-653 137-409 (430)
115 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-26 3.9E-31 256.7 28.9 263 297-653 138-413 (435)
116 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-27 6.4E-32 266.1 21.6 283 387-698 26-350 (588)
117 4gq1_A NUP37; propeller, trans 100.0 9.5E-27 3.3E-31 254.4 26.0 285 386-706 29-386 (393)
118 3f3f_A Nucleoporin SEH1; struc 99.9 2.3E-26 7.8E-31 241.9 26.9 313 287-673 3-350 (351)
119 3mmy_A MRNA export factor; mRN 99.9 6.8E-26 2.3E-30 241.2 30.7 261 402-707 23-302 (368)
120 3jro_A Fusion protein of prote 99.9 8.4E-27 2.9E-31 276.5 25.0 229 389-653 22-284 (753)
121 1l0q_A Surface layer protein; 99.9 1.9E-24 6.4E-29 234.0 38.7 221 390-653 46-274 (391)
122 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-25 3.7E-30 240.7 25.8 196 494-707 76-290 (343)
123 3vu4_A KMHSV2; beta-propeller 99.9 7.5E-25 2.6E-29 236.0 29.3 255 388-653 31-335 (355)
124 4gq1_A NUP37; propeller, trans 99.9 2.2E-25 7.5E-30 243.6 24.5 231 380-651 93-386 (393)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.2E-24 1.1E-28 236.5 31.1 270 383-707 70-385 (415)
126 3bws_A Protein LP49; two-domai 99.9 3E-23 1E-27 227.7 33.8 277 295-652 127-430 (433)
127 1nir_A Nitrite reductase; hemo 99.9 1.1E-22 3.7E-27 232.0 36.5 323 297-707 144-512 (543)
128 2ojh_A Uncharacterized protein 99.9 8.7E-23 3E-27 209.8 26.0 258 393-700 17-293 (297)
129 1nir_A Nitrite reductase; hemo 99.9 2.4E-22 8.2E-27 229.2 32.2 275 384-707 145-456 (543)
130 2w18_A PALB2, fancn, partner a 99.9 7E-23 2.4E-27 216.3 25.1 212 418-652 112-355 (356)
131 1pby_B Quinohemoprotein amine 99.9 3.1E-22 1.1E-26 210.7 29.4 267 389-707 2-308 (337)
132 3u4y_A Uncharacterized protein 99.9 1.4E-21 4.8E-26 206.4 32.2 275 387-707 9-302 (331)
133 1ri6_A Putative isomerase YBHE 99.9 1.2E-21 4.2E-26 206.6 31.5 269 390-706 7-305 (343)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-21 6.6E-26 214.1 33.7 237 398-691 159-410 (415)
135 2ecf_A Dipeptidyl peptidase IV 99.9 3.8E-21 1.3E-25 226.5 31.0 302 386-706 46-456 (741)
136 2z3z_A Dipeptidyl aminopeptida 99.9 9.6E-21 3.3E-25 222.0 32.6 300 388-707 35-433 (706)
137 1k32_A Tricorn protease; prote 99.9 2.3E-21 7.7E-26 238.0 27.4 294 384-706 159-499 (1045)
138 3vgz_A Uncharacterized protein 99.9 5E-20 1.7E-24 195.6 33.6 268 387-699 51-334 (353)
139 1k32_A Tricorn protease; prote 99.9 3.2E-20 1.1E-24 227.7 30.8 253 389-652 215-500 (1045)
140 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-21 1.8E-25 224.6 22.3 271 384-707 24-391 (723)
141 3hfq_A Uncharacterized protein 99.9 5E-19 1.7E-23 188.6 34.4 270 390-706 4-314 (347)
142 2ecf_A Dipeptidyl peptidase IV 99.9 4.4E-20 1.5E-24 217.4 27.3 269 417-707 36-411 (741)
143 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-19 7.5E-24 210.7 30.8 269 389-697 73-428 (723)
144 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-19 9.5E-24 189.2 28.5 272 384-707 7-323 (349)
145 2ojh_A Uncharacterized protein 99.8 2.6E-19 8.9E-24 183.7 26.9 217 472-707 19-256 (297)
146 1ri6_A Putative isomerase YBHE 99.8 3.1E-18 1.1E-22 180.4 28.6 259 386-691 47-335 (343)
147 3scy_A Hypothetical bacterial 99.8 3.1E-17 1E-21 175.8 36.6 270 389-706 14-334 (361)
148 3o4h_A Acylamino-acid-releasin 99.8 4.3E-19 1.5E-23 203.4 22.6 253 390-706 35-312 (582)
149 3vgz_A Uncharacterized protein 99.8 1.7E-17 5.7E-22 176.0 33.0 239 413-707 36-301 (353)
150 3u4y_A Uncharacterized protein 99.8 1.2E-17 4E-22 176.2 30.2 234 423-707 3-250 (331)
151 1z68_A Fibroblast activation p 99.8 5.6E-19 1.9E-23 207.5 20.9 267 386-707 25-389 (719)
152 3o4h_A Acylamino-acid-releasin 99.8 2.5E-18 8.6E-23 197.1 22.0 234 417-707 21-274 (582)
153 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.2E-17 1.4E-21 175.8 28.4 269 390-707 4-339 (365)
154 2z3z_A Dipeptidyl aminopeptida 99.8 2.2E-17 7.4E-22 193.4 28.0 259 388-653 93-434 (706)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-17 4.9E-22 184.4 23.7 224 398-653 23-277 (434)
156 1pby_B Quinohemoprotein amine 99.8 3E-17 1E-21 172.5 24.7 218 389-652 47-308 (337)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 6.3E-18 2.2E-22 187.2 20.2 199 494-707 36-276 (434)
158 3hfq_A Uncharacterized protein 99.8 7.5E-16 2.6E-20 163.8 35.0 240 387-652 50-315 (347)
159 3scy_A Hypothetical bacterial 99.8 5.3E-16 1.8E-20 166.1 33.9 242 384-652 57-335 (361)
160 1z68_A Fibroblast activation p 99.8 6.3E-18 2.1E-22 198.6 18.4 279 389-707 72-441 (719)
161 3pe7_A Oligogalacturonate lyas 99.7 1.6E-16 5.3E-21 171.4 23.4 276 384-706 43-379 (388)
162 4a5s_A Dipeptidyl peptidase 4 99.7 3.2E-15 1.1E-19 176.6 29.6 224 386-651 26-350 (740)
163 3c5m_A Oligogalacturonate lyas 99.7 1.2E-15 4.1E-20 164.3 22.5 290 384-706 43-379 (396)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 6.4E-15 2.2E-19 158.6 27.7 235 384-652 47-339 (365)
165 3azo_A Aminopeptidase; POP fam 99.7 2.5E-15 8.7E-20 174.4 25.4 198 493-705 128-363 (662)
166 1jmx_B Amine dehydrogenase; ox 99.7 1.2E-14 4E-19 153.5 28.1 219 390-652 57-323 (349)
167 2gop_A Trilobed protease; beta 99.7 1E-14 3.4E-19 154.8 27.5 239 397-706 42-328 (347)
168 4a5s_A Dipeptidyl peptidase 4 99.7 2.6E-15 9E-20 177.3 23.9 238 419-706 18-350 (740)
169 1q7f_A NHL, brain tumor CG1071 99.6 2.7E-13 9.3E-18 140.0 32.3 238 418-707 30-278 (286)
170 3fvz_A Peptidyl-glycine alpha- 99.6 6.2E-14 2.1E-18 148.8 26.6 258 417-707 23-320 (329)
171 2oiz_A Aromatic amine dehydrog 99.6 2.4E-13 8.3E-18 146.5 30.7 275 396-691 29-360 (361)
172 3pe7_A Oligogalacturonate lyas 99.6 2.2E-14 7.6E-19 154.4 22.1 257 401-707 13-327 (388)
173 2dg1_A DRP35, lactonase; beta 99.6 4.5E-13 1.5E-17 141.4 30.8 258 390-699 19-300 (333)
174 1q7f_A NHL, brain tumor CG1071 99.6 6.5E-13 2.2E-17 137.1 31.1 219 388-652 41-278 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.6 5.5E-13 1.9E-17 141.4 31.2 224 397-652 68-320 (329)
176 1qks_A Cytochrome CD1 nitrite 99.6 7.7E-12 2.6E-16 142.7 39.7 311 389-706 168-535 (567)
177 3azo_A Aminopeptidase; POP fam 99.6 4.5E-14 1.5E-18 163.9 21.1 230 390-652 94-365 (662)
178 3e5z_A Putative gluconolactona 99.6 8.2E-13 2.8E-17 137.3 28.6 229 417-704 27-282 (296)
179 2xdw_A Prolyl endopeptidase; a 99.6 1.1E-12 3.9E-17 153.9 31.8 241 419-707 126-412 (710)
180 3c5m_A Oligogalacturonate lyas 99.6 5.1E-14 1.7E-18 151.5 18.6 247 402-707 14-327 (396)
181 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.7E-17 138.5 29.0 254 396-707 15-300 (328)
182 1rwi_B Serine/threonine-protei 99.5 1.6E-12 5.5E-17 132.5 25.6 233 419-707 25-262 (270)
183 2gop_A Trilobed protease; beta 99.5 7.6E-13 2.6E-17 140.2 22.6 184 495-705 59-288 (347)
184 2z2n_A Virginiamycin B lyase; 99.5 6.9E-11 2.4E-15 121.6 35.7 256 388-703 26-290 (299)
185 3dsm_A Uncharacterized protein 99.5 9.1E-12 3.1E-16 132.1 29.1 224 389-651 55-299 (328)
186 2oiz_A Aromatic amine dehydrog 99.5 2.5E-12 8.5E-17 138.6 24.8 241 388-636 61-360 (361)
187 2bkl_A Prolyl endopeptidase; m 99.5 2.7E-12 9.2E-17 150.4 27.0 236 419-707 122-395 (695)
188 3e5z_A Putative gluconolactona 99.5 5.7E-12 2E-16 130.9 25.4 213 390-645 42-278 (296)
189 1qks_A Cytochrome CD1 nitrite 99.5 4.8E-11 1.7E-15 136.1 35.0 261 388-653 208-537 (567)
190 3no2_A Uncharacterized protein 99.5 2.7E-11 9.1E-16 125.5 29.1 210 388-642 5-231 (276)
191 1rwi_B Serine/threonine-protei 99.5 9.4E-12 3.2E-16 126.8 24.0 223 388-652 35-262 (270)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.3E-11 1.1E-15 125.4 28.6 233 386-653 27-298 (314)
193 2dg1_A DRP35, lactonase; beta 99.4 2.6E-11 8.9E-16 127.8 27.6 220 470-707 22-261 (333)
194 2mad_H Methylamine dehydrogena 99.4 5.5E-10 1.9E-14 120.8 36.4 271 387-707 31-348 (373)
195 1yr2_A Prolyl oligopeptidase; 99.4 2.3E-11 7.8E-16 143.6 27.6 238 419-707 164-439 (741)
196 2xdw_A Prolyl endopeptidase; a 99.4 1.7E-11 5.8E-16 143.9 26.2 232 399-653 152-413 (710)
197 2z2n_A Virginiamycin B lyase; 99.4 8.8E-10 3E-14 113.3 35.5 234 417-706 14-252 (299)
198 2qc5_A Streptogramin B lactona 99.4 1.4E-09 5E-14 111.7 36.1 260 388-706 31-297 (300)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.4E-10 1.2E-14 117.7 30.8 238 417-707 17-297 (314)
200 2bkl_A Prolyl endopeptidase; m 99.4 3.5E-12 1.2E-16 149.4 16.9 225 394-653 143-396 (695)
201 3g4e_A Regucalcin; six bladed 99.4 3.8E-10 1.3E-14 117.6 29.1 222 385-642 22-260 (297)
202 3g4e_A Regucalcin; six bladed 99.3 4.6E-10 1.6E-14 116.9 27.4 224 418-698 13-261 (297)
203 2qc5_A Streptogramin B lactona 99.3 1.3E-08 4.4E-13 104.5 35.0 234 417-706 19-257 (300)
204 3hrp_A Uncharacterized protein 99.3 1.4E-09 4.8E-14 119.1 28.9 237 418-707 131-408 (409)
205 2ghs_A AGR_C_1268P; regucalcin 99.3 4.2E-09 1.4E-13 111.4 30.6 221 419-698 50-291 (326)
206 2ghs_A AGR_C_1268P; regucalcin 99.3 5.8E-09 2E-13 110.3 31.6 216 387-642 60-290 (326)
207 1xip_A Nucleoporin NUP159; bet 99.3 4.1E-11 1.4E-15 129.6 15.1 175 496-697 39-232 (388)
208 3c75_H MADH, methylamine dehyd 99.2 9.8E-10 3.4E-14 120.4 25.0 262 398-707 99-400 (426)
209 3sjl_D Methylamine dehydrogena 99.2 3.4E-09 1.1E-13 114.3 28.2 273 386-707 42-361 (386)
210 1xip_A Nucleoporin NUP159; bet 99.2 2.3E-10 7.8E-15 123.8 18.9 181 419-642 39-232 (388)
211 3hrp_A Uncharacterized protein 99.2 7E-09 2.4E-13 113.5 31.1 224 387-651 141-407 (409)
212 3no2_A Uncharacterized protein 99.2 7E-10 2.4E-14 114.8 21.6 179 505-706 4-192 (276)
213 3dr2_A Exported gluconolactona 99.2 3.5E-09 1.2E-13 110.6 25.4 227 417-704 44-302 (305)
214 1yr2_A Prolyl oligopeptidase; 99.2 1.7E-09 5.7E-14 127.6 24.7 198 494-706 162-390 (741)
215 3iuj_A Prolyl endopeptidase; h 99.1 4.9E-09 1.7E-13 122.7 25.0 192 498-707 178-403 (693)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.7E-08 3E-12 102.8 31.7 288 388-707 53-376 (376)
217 2mad_H Methylamine dehydrogena 99.1 1.1E-07 3.7E-12 102.7 31.4 215 396-618 95-356 (373)
218 3iuj_A Prolyl endopeptidase; h 99.1 9.4E-09 3.2E-13 120.3 23.5 229 395-652 152-403 (693)
219 3sjl_D Methylamine dehydrogena 99.0 1.4E-08 4.9E-13 109.4 22.6 231 396-634 107-384 (386)
220 3dr2_A Exported gluconolactona 99.0 2.2E-08 7.5E-13 104.5 23.5 217 389-648 58-301 (305)
221 1mda_H Methylamine dehydrogena 99.0 7.8E-09 2.7E-13 111.2 19.3 262 390-707 34-344 (368)
222 3hxj_A Pyrrolo-quinoline quino 99.0 8.5E-09 2.9E-13 107.9 18.9 285 388-706 30-321 (330)
223 1kb0_A Quinohemoprotein alcoho 99.0 7.1E-08 2.4E-12 112.4 28.5 290 388-695 77-536 (677)
224 2qe8_A Uncharacterized protein 98.9 1.1E-07 3.7E-12 101.1 24.4 193 492-700 64-312 (343)
225 2ece_A 462AA long hypothetical 98.9 2.3E-07 7.9E-12 100.9 25.6 194 496-697 139-399 (462)
226 1yiq_A Quinohemoprotein alcoho 98.9 7.5E-07 2.6E-11 104.0 29.7 288 388-693 70-532 (689)
227 3c75_H MADH, methylamine dehyd 98.9 7.6E-08 2.6E-12 105.3 19.7 218 396-619 147-409 (426)
228 2qe8_A Uncharacterized protein 98.8 2.9E-07 9.8E-12 97.8 22.4 204 495-707 17-276 (343)
229 2hz6_A Endoplasmic reticulum t 98.8 1.6E-09 5.6E-14 116.8 3.7 205 388-637 9-217 (369)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.2E-06 4E-11 93.9 26.1 248 388-651 103-375 (376)
231 2iwa_A Glutamine cyclotransfer 98.8 9.8E-07 3.4E-11 90.2 22.9 197 492-706 16-234 (266)
232 2ece_A 462AA long hypothetical 98.7 1.7E-06 5.8E-11 94.1 25.3 222 387-642 95-399 (462)
233 1fwx_A Nitrous oxide reductase 98.7 1.1E-06 3.6E-11 98.9 23.9 221 475-698 112-407 (595)
234 1mda_H Methylamine dehydrogena 98.7 1.6E-07 5.5E-12 101.0 16.6 225 396-633 94-366 (368)
235 2iwa_A Glutamine cyclotransfer 98.7 3.4E-06 1.2E-10 86.1 24.2 203 408-653 9-236 (266)
236 3hxj_A Pyrrolo-quinoline quino 98.6 1.2E-06 4.2E-11 91.2 19.8 213 388-651 107-321 (330)
237 1fwx_A Nitrous oxide reductase 98.6 7.4E-07 2.5E-11 100.1 18.8 235 389-642 102-406 (595)
238 3nol_A Glutamine cyclotransfer 98.6 5.4E-06 1.8E-10 84.0 22.9 191 492-699 38-245 (262)
239 1npe_A Nidogen, entactin; glyc 98.6 1.6E-05 5.6E-10 80.7 26.5 209 387-636 47-263 (267)
240 1kb0_A Quinohemoprotein alcoho 98.6 5.2E-06 1.8E-10 96.6 25.6 246 387-640 127-536 (677)
241 1yiq_A Quinohemoprotein alcoho 98.6 5.4E-06 1.8E-10 96.8 25.5 247 388-642 121-537 (689)
242 2hz6_A Endoplasmic reticulum t 98.6 7.5E-09 2.5E-13 111.6 0.8 177 505-707 8-190 (369)
243 4a2l_A BT_4663, two-component 98.5 0.00029 9.9E-09 83.4 38.0 294 390-706 185-523 (795)
244 2p4o_A Hypothetical protein; p 98.5 6.2E-05 2.1E-09 78.3 28.5 237 408-699 22-278 (306)
245 1npe_A Nidogen, entactin; glyc 98.5 0.00013 4.3E-09 74.0 30.1 191 495-706 36-235 (267)
246 3mbr_X Glutamine cyclotransfer 98.5 2.3E-05 8E-10 78.5 23.0 190 492-698 16-223 (243)
247 2fp8_A Strictosidine synthase; 98.5 5.8E-05 2E-09 78.9 27.4 227 387-652 29-311 (322)
248 2fp8_A Strictosidine synthase; 98.4 6.9E-05 2.4E-09 78.3 27.1 244 419-707 20-311 (322)
249 1kv9_A Type II quinohemoprotei 98.4 2.3E-05 7.8E-10 91.1 25.5 192 388-616 66-337 (668)
250 4a2l_A BT_4663, two-component 98.4 0.00057 1.9E-08 80.8 38.1 281 390-696 275-603 (795)
251 2ad6_A Methanol dehydrogenase 98.4 9E-05 3.1E-09 84.4 28.4 259 389-653 63-493 (571)
252 3nok_A Glutaminyl cyclase; bet 98.4 3E-05 1E-09 78.5 21.5 182 497-698 57-254 (268)
253 3nol_A Glutamine cyclotransfer 98.4 7E-05 2.4E-09 75.8 23.3 191 409-643 32-244 (262)
254 1kv9_A Type II quinohemoprotei 98.3 8.2E-05 2.8E-09 86.4 26.3 252 388-652 117-486 (668)
255 3v9f_A Two-component system se 98.3 0.0013 4.4E-08 77.6 35.5 292 390-706 223-565 (781)
256 3v9f_A Two-component system se 98.2 0.0013 4.3E-08 77.7 34.4 288 389-700 269-603 (781)
257 3v64_C Agrin; beta propeller, 98.2 0.0017 5.8E-08 68.9 32.0 214 397-651 52-272 (349)
258 3v65_B Low-density lipoprotein 98.2 0.0011 3.6E-08 71.5 30.4 216 396-651 94-315 (386)
259 1flg_A Protein (quinoprotein e 98.2 0.0016 5.6E-08 74.1 33.4 287 389-693 69-543 (582)
260 2p4o_A Hypothetical protein; p 98.2 0.00084 2.9E-08 69.6 28.3 213 388-644 43-278 (306)
261 3nok_A Glutaminyl cyclase; bet 98.2 0.00013 4.5E-09 73.8 21.1 185 409-641 44-253 (268)
262 1w6s_A Methanol dehydrogenase 98.2 0.00079 2.7E-08 76.8 30.2 261 389-653 63-502 (599)
263 3mbr_X Glutamine cyclotransfer 98.2 0.00059 2E-08 68.3 24.9 189 409-642 10-222 (243)
264 2ad6_A Methanol dehydrogenase 98.2 0.00019 6.4E-09 81.7 24.2 244 388-640 115-523 (571)
265 3v65_B Low-density lipoprotein 98.1 0.0017 5.8E-08 69.9 29.8 197 492-706 113-315 (386)
266 1ijq_A LDL receptor, low-densi 98.1 0.0042 1.4E-07 64.7 32.1 199 492-706 27-235 (316)
267 2xe4_A Oligopeptidase B; hydro 98.1 8.1E-05 2.8E-09 87.7 20.3 198 496-705 175-394 (751)
268 3v64_C Agrin; beta propeller, 98.1 0.0021 7.1E-08 68.2 29.4 155 493-652 71-232 (349)
269 1ijq_A LDL receptor, low-densi 98.1 0.012 4E-07 61.3 34.6 215 398-652 10-236 (316)
270 4hw6_A Hypothetical protein, I 98.1 0.0013 4.6E-08 72.0 27.4 242 419-706 140-430 (433)
271 3tc9_A Hypothetical hydrolase; 98.0 0.0018 6E-08 70.9 28.0 203 493-706 177-427 (430)
272 3qqz_A Putative uncharacterize 98.0 0.0013 4.4E-08 66.6 24.4 201 492-705 24-249 (255)
273 3p5b_L Low density lipoprotein 98.0 0.017 5.8E-07 62.3 35.2 220 397-652 91-318 (400)
274 4hw6_A Hypothetical protein, I 98.0 0.0017 5.9E-08 71.1 27.4 234 375-651 138-430 (433)
275 3tc9_A Hypothetical hydrolase; 98.0 0.0022 7.4E-08 70.2 27.9 234 375-651 136-427 (430)
276 2xbg_A YCF48-like protein; pho 97.9 0.0087 3E-07 62.6 29.7 189 495-706 122-319 (327)
277 2xe4_A Oligopeptidase B; hydro 97.9 0.00087 3E-08 78.8 23.8 151 498-651 224-395 (751)
278 3p5b_L Low density lipoprotein 97.9 0.013 4.3E-07 63.4 31.0 157 492-652 109-275 (400)
279 1w6s_A Methanol dehydrogenase 97.9 0.0013 4.4E-08 75.1 23.4 239 390-637 123-529 (599)
280 1k3i_A Galactose oxidase precu 97.8 0.00051 1.8E-08 79.4 20.1 262 387-698 197-530 (656)
281 3sov_A LRP-6, low-density lipo 97.8 0.015 5.2E-07 60.7 29.0 222 390-652 7-236 (318)
282 3kya_A Putative phosphatase; s 97.8 0.0047 1.6E-07 68.4 25.5 202 495-707 186-473 (496)
283 3sov_A LRP-6, low-density lipo 97.8 0.014 4.9E-07 60.9 27.9 155 495-652 35-195 (318)
284 3amr_A 3-phytase; beta-propell 97.7 0.0081 2.8E-07 63.2 24.8 201 388-620 40-272 (355)
285 3m0c_C LDL receptor, low-densi 97.7 0.055 1.9E-06 63.6 33.4 221 396-652 402-630 (791)
286 2p9w_A MAL S 1 allergenic prot 97.6 0.0051 1.7E-07 64.2 21.5 155 494-653 12-214 (334)
287 1flg_A Protein (quinoprotein e 97.6 0.0034 1.2E-07 71.4 21.7 79 559-639 465-544 (582)
288 1k3i_A Galactose oxidase precu 97.6 0.0024 8.3E-08 73.7 20.5 199 494-706 242-494 (656)
289 3m0c_C LDL receptor, low-densi 97.6 0.042 1.4E-06 64.6 30.8 161 489-652 418-587 (791)
290 3qqz_A Putative uncharacterize 97.5 0.009 3.1E-07 60.3 20.8 166 534-706 20-201 (255)
291 2p9w_A MAL S 1 allergenic prot 97.4 0.012 4.1E-07 61.4 20.8 161 538-707 11-213 (334)
292 3s94_A LRP-6, low-density lipo 97.4 0.11 3.9E-06 59.3 31.2 201 373-612 37-244 (619)
293 2xbg_A YCF48-like protein; pho 97.4 0.042 1.4E-06 57.3 25.2 150 493-651 161-319 (327)
294 2ism_A Putative oxidoreductase 97.4 0.048 1.6E-06 57.7 25.7 236 418-697 31-333 (352)
295 1n7d_A LDL receptor, low-densi 97.4 0.00075 2.6E-08 78.6 12.4 174 475-652 386-569 (699)
296 4a0p_A LRP6, LRP-6, low-densit 97.3 0.075 2.6E-06 60.9 28.2 196 377-612 38-238 (628)
297 2xzh_A Clathrin heavy chain 1; 97.3 0.2 7E-06 51.9 30.1 226 389-650 79-328 (365)
298 3ei3_A DNA damage-binding prot 97.3 0.21 7.3E-06 61.2 33.2 311 379-705 695-1058(1158)
299 3a9g_A Putative uncharacterize 97.3 0.065 2.2E-06 56.7 25.3 238 417-697 28-330 (354)
300 4a0p_A LRP6, LRP-6, low-densit 97.2 0.19 6.6E-06 57.4 29.6 192 495-706 37-234 (628)
301 3das_A Putative oxidoreductase 97.2 0.22 7.6E-06 52.4 27.7 240 417-697 31-326 (347)
302 3amr_A 3-phytase; beta-propell 97.2 0.067 2.3E-06 56.2 23.3 188 505-707 39-261 (355)
303 3pbp_A Nucleoporin NUP82; beta 97.1 0.031 1E-06 60.1 19.8 150 546-704 27-207 (452)
304 1n7d_A LDL receptor, low-densi 97.1 0.0011 3.9E-08 77.1 9.6 218 397-620 385-622 (699)
305 3kya_A Putative phosphatase; s 97.1 0.02 7E-07 63.3 19.1 160 541-706 140-338 (496)
306 3s94_A LRP-6, low-density lipo 97.1 0.13 4.3E-06 58.8 26.5 158 492-652 37-200 (619)
307 3a9g_A Putative uncharacterize 97.0 0.22 7.6E-06 52.5 26.5 224 391-642 42-330 (354)
308 2g8s_A Glucose/sorbosone dehyd 97.0 0.12 4E-06 54.6 24.0 243 418-702 18-347 (353)
309 1bpo_A Protein (clathrin); cla 97.0 0.53 1.8E-05 50.7 30.9 219 397-650 85-327 (494)
310 2ism_A Putative oxidoreductase 96.7 0.15 5.1E-06 53.8 21.9 142 494-642 30-221 (352)
311 3sre_A PON1, serum paraoxonase 96.7 0.16 5.6E-06 53.6 21.9 187 495-699 50-287 (355)
312 3pbp_A Nucleoporin NUP82; beta 96.6 0.25 8.4E-06 53.1 22.3 142 503-650 29-208 (452)
313 1tl2_A L10, protein (tachylect 96.6 0.047 1.6E-06 53.4 14.8 143 495-650 41-204 (236)
314 2xzh_A Clathrin heavy chain 1; 96.5 0.95 3.3E-05 46.9 29.7 250 395-702 46-325 (365)
315 3ei3_A DNA damage-binding prot 96.4 3 0.0001 51.1 37.1 255 376-652 327-634 (1158)
316 1tl2_A L10, protein (tachylect 96.2 0.16 5.5E-06 49.7 16.1 150 540-702 41-203 (236)
317 1cru_A Protein (soluble quinop 96.1 0.36 1.2E-05 52.8 20.8 105 539-643 26-163 (454)
318 2g8s_A Glucose/sorbosone dehyd 96.0 0.93 3.2E-05 47.6 23.0 140 494-640 17-214 (353)
319 3das_A Putative oxidoreductase 95.9 2.1 7.3E-05 44.8 26.8 229 389-642 44-326 (347)
320 1bpo_A Protein (clathrin); cla 95.7 3 0.0001 45.0 29.5 253 394-702 32-324 (494)
321 3sre_A PON1, serum paraoxonase 95.6 2.7 9.2E-05 44.2 31.3 145 496-644 113-287 (355)
322 1xi4_A Clathrin heavy chain; a 95.4 0.69 2.4E-05 56.8 20.4 206 389-630 78-307 (1630)
323 1cru_A Protein (soluble quinop 95.4 0.85 2.9E-05 49.8 20.0 103 494-599 26-162 (454)
324 3sbq_A Nitrous-oxide reductase 95.2 1.6 5.4E-05 48.4 21.0 82 625-707 324-406 (638)
325 2vpj_A Kelch-like protein 12; 94.6 0.69 2.4E-05 46.8 15.6 140 505-651 112-275 (301)
326 3ii7_A Kelch-like protein 7; p 94.3 1.3 4.5E-05 44.8 17.2 141 505-652 101-270 (306)
327 2xn4_A Kelch-like protein 2; s 94.2 1.7 5.8E-05 43.9 17.8 141 505-652 108-274 (302)
328 3ott_A Two-component system se 94.2 10 0.00036 43.7 32.8 216 389-650 74-303 (758)
329 2be1_A Serine/threonine-protei 93.8 0.74 2.5E-05 48.2 14.1 186 389-613 11-233 (339)
330 4asc_A Kelch repeat and BTB do 93.7 5 0.00017 40.7 20.3 133 505-644 98-253 (315)
331 2vpj_A Kelch-like protein 12; 93.2 3.7 0.00013 41.2 18.2 141 505-652 62-229 (301)
332 3s25_A Hypothetical 7-bladed b 92.9 5.6 0.00019 40.6 18.9 134 501-650 110-249 (302)
333 1xi4_A Clathrin heavy chain; a 92.9 6 0.0002 48.8 21.3 159 495-659 106-294 (1630)
334 3s25_A Hypothetical 7-bladed b 92.8 3.8 0.00013 41.9 17.5 132 503-651 22-173 (302)
335 3sbq_A Nitrous-oxide reductase 92.6 13 0.00046 41.2 21.8 203 389-611 143-408 (638)
336 2be1_A Serine/threonine-protei 92.5 1.1 3.8E-05 46.8 12.9 142 432-608 12-181 (339)
337 3ii7_A Kelch-like protein 7; p 92.1 5.1 0.00018 40.3 17.4 141 505-652 55-223 (306)
338 3no0_A DNA gyrase subunit A; D 92.0 11 0.00038 37.9 19.7 199 495-704 24-239 (276)
339 2xn4_A Kelch-like protein 2; s 91.6 3.4 0.00012 41.6 15.3 105 505-612 155-277 (302)
340 1zgk_A Kelch-like ECH-associat 91.5 3.7 0.00013 41.6 15.6 105 505-612 121-241 (308)
341 2zwa_A Leucine carboxyl methyl 91.4 3.6 0.00012 47.4 16.9 107 504-612 499-636 (695)
342 2uvk_A YJHT; unknown function, 91.0 2.3 8E-05 44.0 13.7 123 519-644 168-326 (357)
343 4asc_A Kelch repeat and BTB do 90.7 15 0.00052 36.9 20.7 143 503-652 43-219 (315)
344 3uc1_A DNA gyrase subunit A; D 90.5 18 0.0006 37.4 21.1 206 494-705 41-275 (327)
345 3ott_A Two-component system se 89.7 33 0.0011 39.3 37.2 293 389-705 203-541 (758)
346 2woz_A Kelch repeat and BTB do 89.5 19 0.00064 36.3 20.8 105 505-612 109-232 (318)
347 1zgk_A Kelch-like ECH-associat 89.2 8.3 0.00028 38.9 15.8 105 505-612 168-288 (308)
348 2wg3_C Hedgehog-interacting pr 87.8 6.1 0.00021 43.1 14.3 119 580-700 13-160 (463)
349 2wg3_C Hedgehog-interacting pr 85.6 44 0.0015 36.2 29.2 30 418-447 14-43 (463)
350 3qhy_B Beta-lactamase inhibito 85.6 29 0.00099 34.7 17.1 122 520-651 82-204 (282)
351 2zwa_A Leucine carboxyl methyl 79.4 29 0.001 39.7 16.0 149 505-653 451-634 (695)
352 4hvt_A Ritya.17583.B, post-pro 79.3 94 0.0032 35.6 24.1 129 518-650 215-375 (711)
353 2uvk_A YJHT; unknown function, 79.3 58 0.002 33.1 19.1 50 560-610 168-225 (357)
354 1suu_A DNA gyrase subunit A; t 76.3 70 0.0024 32.5 22.7 193 504-706 6-228 (312)
355 3uc1_A DNA gyrase subunit A; D 76.1 74 0.0025 32.6 23.8 187 505-700 108-321 (327)
356 1suu_A DNA gyrase subunit A; t 74.9 76 0.0026 32.2 24.2 160 495-655 47-232 (312)
357 1zi0_A DNA gyrase subunit A; b 73.9 80 0.0027 32.0 21.4 192 505-706 2-223 (307)
358 3qhy_B Beta-lactamase inhibito 71.1 86 0.003 31.1 15.7 140 495-650 102-242 (282)
359 1wp5_A Topoisomerase IV; broke 70.8 97 0.0033 31.6 23.4 160 495-655 39-226 (323)
360 1zi0_A DNA gyrase subunit A; b 66.5 1.1E+02 0.0039 30.8 22.0 160 495-655 42-227 (307)
361 2woz_A Kelch repeat and BTB do 65.5 1.1E+02 0.0038 30.3 22.0 143 503-652 54-229 (318)
362 3q6k_A 43.2 kDa salivary prote 63.7 1.5E+02 0.0051 31.1 22.7 180 399-598 124-341 (381)
363 1wp5_A Topoisomerase IV; broke 63.5 1.3E+02 0.0046 30.6 20.6 192 504-705 3-221 (323)
364 3no0_A DNA gyrase subunit A; D 61.3 1.3E+02 0.0045 29.8 22.7 155 494-653 67-245 (276)
365 3l6v_A GYRA, DNA gyrase subuni 60.2 1.7E+02 0.0057 30.5 22.1 144 504-653 5-179 (370)
366 3b7f_A Glycosyl hydrolase, BNR 57.7 1.7E+02 0.006 30.0 30.1 109 541-650 233-368 (394)
367 3l6v_A GYRA, DNA gyrase subuni 53.9 2.1E+02 0.0071 29.8 23.3 164 492-656 43-267 (370)
368 3q6k_A 43.2 kDa salivary prote 51.0 2.4E+02 0.0081 29.5 24.2 169 520-697 124-342 (381)
369 3zwu_A Alkaline phosphatase PH 50.5 45 0.0015 37.3 9.2 56 542-598 478-548 (592)
370 4gq2_M Nucleoporin NUP120; bet 47.3 68 0.0023 38.2 10.7 37 541-577 237-274 (950)
371 4a9v_A PHOX; hydrolase, beta-p 43.5 84 0.0029 35.0 9.8 60 540-599 476-549 (592)
372 1zvt_A Topoisomerase IV subuni 43.3 2.1E+02 0.0072 27.9 12.1 144 554-706 5-160 (256)
373 4hvt_A Ritya.17583.B, post-pro 40.5 4.6E+02 0.016 29.8 21.9 197 499-703 133-373 (711)
374 1sqj_A OXG-RCBH, oligoxylogluc 39.6 4.1E+02 0.014 30.5 15.7 158 539-704 14-196 (789)
375 4gq2_M Nucleoporin NUP120; bet 37.5 2E+02 0.0069 34.0 12.8 31 624-654 236-266 (950)
376 3zwu_A Alkaline phosphatase PH 32.3 1.2E+02 0.0041 33.9 9.0 62 496-558 477-549 (592)
377 2cn3_A Xyloglucanase, beta-1,4 29.7 5.7E+02 0.019 28.9 14.6 102 540-642 23-151 (737)
378 3b7f_A Glycosyl hydrolase, BNR 25.7 5.4E+02 0.018 26.1 20.3 108 539-649 54-203 (394)
379 4fhn_B Nucleoporin NUP120; pro 25.5 60 0.0021 39.5 5.4 37 541-577 239-276 (1139)
380 4a9v_A PHOX; hydrolase, beta-p 25.1 2.3E+02 0.0079 31.4 9.4 63 495-558 476-549 (592)
381 4fhn_B Nucleoporin NUP120; pro 24.6 57 0.002 39.7 5.0 31 386-416 247-277 (1139)
382 3f7f_A Nucleoporin NUP120; nuc 22.1 85 0.0029 35.9 5.3 29 388-416 231-259 (729)
383 3f7f_A Nucleoporin NUP120; nuc 21.0 1.3E+02 0.0044 34.4 6.5 35 542-578 224-259 (729)
384 2cn3_A Xyloglucanase, beta-1,4 20.2 9.5E+02 0.033 27.0 19.6 102 495-601 23-153 (737)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-41 Score=388.66 Aligned_cols=386 Identities=16% Similarity=0.186 Sum_probs=294.3
Q ss_pred CCCCCCCcc-----ccCCCCCccCCh---hhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235 288 KPKLPGHEE-----SYNPSLEYIPTQ---EELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV 359 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge~L~s~---~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~ 359 (707)
...+.||.. +|+|+|.||+++ +.++.|+....+ ...+..++++. ..+.++.|+|++
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~---------~~~~~~~~~~~-------~~v~~v~fs~dg 115 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT---------HILKTTIPVFS-------GPVKDISWDSES 115 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT---------CCEEEEEECSS-------SCEEEEEECTTS
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc---------ceeeEeecccC-------CceEEEEECCCC
Confidence 335778876 699999999995 456677632211 11122333333 344788888887
Q ss_pred ccc-----------eeec-CCCCCCCCCCCCCCC---cccCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEE
Q 005235 360 RKK-----------RVNI-DPETLKPKLPSRKDL---KPYPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQY 422 (707)
Q Consensus 360 ~k~-----------~lni-dp~~llp~lp~~~~l---~pfp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~ 422 (707)
+.. .+.+ +....+..+..+... -.|.+++ ..+++|+.|++|++||..+++++.++.. .+.|.+
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195 (611)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE
Confidence 532 1222 433333344433221 1244444 4799999999999999999999988876 789999
Q ss_pred EEEccCCCccEEEEEeCCeEEEEECCCCCch--h-c------ccccceeeeccc-----ccccCCCCcEEEEecCCccc-
Q 005235 423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEE--E-Q------RRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD- 487 (707)
Q Consensus 423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~--~-~------~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~- 487 (707)
++|+|++ ..|++++.|++|++|++.++... + . +|...+.++.|+ +++++.|++|++|+..+...
T Consensus 196 v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 196 VRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 9999999 47888999999999998877542 2 1 577888888886 88999999999999875321
Q ss_pred -------------------------------------------eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235 488 -------------------------------------------GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 488 -------------------------------------------~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw 524 (707)
..+.+|...|.+++|+|+|++|++++.|+ .|++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~---~v~~W 351 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSW 351 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEE
Confidence 12347999999999999999999999998 99999
Q ss_pred ECCCCceeeeee--------------------------------------------------------------------
Q 005235 525 QLSKKLSHRIPF-------------------------------------------------------------------- 536 (707)
Q Consensus 525 dl~~~~~~~~~~-------------------------------------------------------------------- 536 (707)
|+.++... ..+
T Consensus 352 d~~~~~~~-~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 352 DISTGISN-RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp ETTTCCEE-ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCCcee-eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 98765432 111
Q ss_pred ---------------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235 537 ---------------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 537 ---------------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sG 598 (707)
.+...+.+++|+|++++|++|+ |++|++||+.++.. +.. .+|...|++++|+|+|.+|+++
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEE
Confidence 1123467899999999999999 89999999987654 334 6788999999999999999999
Q ss_pred ECCCcEEEEECCCCCcceEE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CC
Q 005235 599 SREGKLCWFDMDLSSKPYRV--LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TS 675 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~~~~~~--l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~ 675 (707)
+.|+.|++||+.+...+... +.+|...|++|+|+|++++||+|+.|++|+||++. .... ..+..+.+| ..
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~------~~~~-~~~~~~~~h~~~ 582 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN------KPSD-HPIIIKGAHAMS 582 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT------CTTS-CCEEETTSSTTS
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC------Cccc-ccchhhccCccc
Confidence 99999999999863344433 34599999999999999999999999999999653 2211 113567889 66
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
. |.+++|+|++. |+++|.|++|++|++
T Consensus 583 ~----v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 583 S----VNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp C----EEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred C----eeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 6 99999999998 999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-39 Score=375.17 Aligned_cols=352 Identities=16% Similarity=0.211 Sum_probs=265.4
Q ss_pred ccCCCCCccCChh--hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235 297 SYNPSLEYIPTQE--ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK 374 (707)
Q Consensus 297 synP~ge~L~s~~--~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~ 374 (707)
+|+|+|++|++.. .+..|+. .....++.+.+ |...+..+.|+|++
T Consensus 25 ~~spdg~~l~~~~~~~v~l~~~-----------~~~~~~~~~~~-------h~~~v~~~~~spdg--------------- 71 (611)
T 1nr0_A 25 GNTPAGDKIQYCNGTSVYTVPV-----------GSLTDTEIYTE-------HSHQTTVAKTSPSG--------------- 71 (611)
T ss_dssp EECTTSSEEEEEETTEEEEEET-----------TCSSCCEEECC-------CSSCEEEEEECTTS---------------
T ss_pred eeCCCCCEEEeCCCCEEEEecC-----------CCcccCeEecC-------CCCceEEEEECCCC---------------
Confidence 6999999998843 3344542 22223333333 34444677788765
Q ss_pred CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeC----CeEEEEEC
Q 005235 375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVG----QDVLILNT 447 (707)
Q Consensus 375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~ 447 (707)
.++++|+.||+|+|||+.+++ +...+.. .+.|.+|+|+|++. .|++++.+ +.|.+|+.
T Consensus 72 --------------~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 72 --------------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp --------------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTT
T ss_pred --------------cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC-EEEEEECCCCceeEEEEeeC
Confidence 499999999999999997653 4445554 78999999999993 56666654 37888886
Q ss_pred CCCCchhcccccceeeeccc------ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccE
Q 005235 448 GLGNEEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRA 520 (707)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~ 520 (707)
......+.+|...+.++.|. +++++.|+++++|+...... ..+.+|...|.+++|+|+|++||+++.|+ .
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~---~ 213 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG---T 213 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---C
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC---c
Confidence 55555677888888888876 78899999999999876543 34778999999999999999999999998 9
Q ss_pred EEEEECCCCceeeeee--------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE----------------
Q 005235 521 IFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK---------------- 575 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~---------------- 575 (707)
|+||++.++... ..+ .|.+.|.+++|+|++.+|++++ |++|++||+.+++++.+
T Consensus 214 i~lwd~~~g~~~-~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 214 IVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEEECCCCcEe-eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 999999888776 555 4889999999999999999998 99999999998765543
Q ss_pred ---------------------------EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-e-------
Q 005235 576 ---------------------------LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-K------- 620 (707)
Q Consensus 576 ---------------------------l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~------- 620 (707)
+.+|...|++++|+|+|.+|++|+.|+.|++||+.++. ....+ .
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMIT 371 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSSCSCSSCEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecccCCcceEE
Confidence 34688889999999999999999999999999987541 11100 0
Q ss_pred --------------------------------------------------------------------------cCCCCE
Q 005235 621 --------------------------------------------------------------------------CHPKDI 626 (707)
Q Consensus 621 --------------------------------------------------------------------------~h~~~I 626 (707)
.|...+
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence 123345
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeccccc-------------------------------------CCCCCCcccceE-
Q 005235 627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYS-------------------------------------DLNQNPLIVPLE- 668 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~-------------------------------------Dl~~~~~~~pl~- 668 (707)
.+++|+|+|++||+|+.|++|+||++.... ++.+.. .++.
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~ 529 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHT 529 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCC
T ss_pred eEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeee
Confidence 677777777777777777777777653210 000000 0011
Q ss_pred -EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 669 -ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 669 -~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+.+|... |.+++|+|++++|+||+.|++|+||++
T Consensus 530 ~~~~~H~~~----V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 530 NSWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp CCCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeeecccc----eeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 12347776 999999999999999999999999985
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-39 Score=368.05 Aligned_cols=345 Identities=18% Similarity=0.272 Sum_probs=287.6
Q ss_pred CCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
.+.+|.. +|+|++.+|++.+. ++.|+. ....++.+.++... +..+.++|+.
T Consensus 216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~------------~~~~~~~~~~~~~~-------v~~v~~~~d~-- 274 (577)
T 2ymu_A 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR------------NGQLLQTLTGHSSS-------VNGVAFRPDG-- 274 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT------------TSCEEEEECCCSSC-------EEEEEECTTS--
T ss_pred EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC------------CCCEEEEEecCCCC-------EEEEEEcCCC--
Confidence 3455654 69999999988544 344431 22334444444333 3556666544
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCC
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ 440 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~ 440 (707)
..+++++.|++|++|+. +++++..+.. ...|.+++|+|++ ..+++++.++
T Consensus 275 ---------------------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~ 325 (577)
T 2ymu_A 275 ---------------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDK 325 (577)
T ss_dssp ---------------------------SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred ---------------------------CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCC
Confidence 48999999999999996 5677777776 7899999999999 4788888999
Q ss_pred eEEEEECCCCCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235 441 DVLILNTGLGNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 441 ~V~lwd~~~~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
.|++|+...... .+..+...+.++.++ +++++.++.+++|+..+.....+..|...|.+++|+|+|++|++++.
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 405 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence 999999876533 345566777777765 78889999999999877777678899999999999999999999999
Q ss_pred CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235 515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg 592 (707)
|+ .|++|+... +.. ..+ .|...|.+++|+|++.+|++++ |+.|++||+ +++.+..+.+|...|.+++|+|+|
T Consensus 406 d~---~v~~~~~~~-~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 406 DK---TVKLWNRNG-QLL-QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp TS---EEEEECTTC-CEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred CC---EEEEEeCCC-CEE-EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCC
Confidence 88 999999654 444 566 8999999999999999999998 899999996 567888999999999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG 672 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g 672 (707)
.+|++|+.|+.|++||.. + ++++.+.+|...|++++|+|++++||+++.||+|+||| . ++. ++..+.+
T Consensus 480 ~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd------~-~~~---~~~~~~~ 547 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------R-NGQ---LLQTLTG 547 (577)
T ss_dssp CEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC------T-TSC---EEEEEEC
T ss_pred CEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe------C-CCC---EEEEEcC
Confidence 999999999999999964 4 78899999999999999999999999999999999994 3 222 4788999
Q ss_pred CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 673 HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 673 h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|... |++++|+|++++|+|+|.|++|++||
T Consensus 548 h~~~----v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSS----VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSC----EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCC----EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9988 99999999999999999999999997
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-39 Score=356.73 Aligned_cols=266 Identities=19% Similarity=0.259 Sum_probs=241.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+|||+.+++++.++.+ .+.|.+|+|+|++. .|++++.|++|++||+.++..
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~--------------- 184 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC--------------- 184 (410)
T ss_dssp SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE---------------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------
Confidence 4899999999999999999999999887 78999999999994 788889999999999865421
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+.+|...|.+++|+|+|++|++++.|+ .|++||+.++... ..+ .|...|.+++
T Consensus 185 -------------------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~---~i~~wd~~~~~~~-~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 185 -------------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDK---TIKMWEVQTGYCV-KTFTGHREWVRMVR 241 (410)
T ss_dssp -------------------EECCCCCSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEE
T ss_pred -------------------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCcEE-EEEeCCCccEEEEE
Confidence 112457999999999999999999999998 9999999999887 788 8999999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC--------------------CCEEEEEECCCcEE
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA--------------------GDNLIVGSREGKLC 605 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd--------------------g~~L~sGs~Dg~I~ 605 (707)
|+|++.+|++++ |++|++||+.++++...+.+|...|.+++|+|+ |.+|++|+.|+.|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 999999999998 999999999999999999999999999999996 67999999999999
Q ss_pred EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE
Q 005235 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK 685 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~ 685 (707)
+||+.++ .++..+.+|...|++++|+|++.+|++|+.||+|+||| +.... ++..+.+|... |++++
T Consensus 322 iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd------~~~~~---~~~~~~~h~~~----v~~l~ 387 (410)
T 1vyh_C 322 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD------YKNKR---CMKTLNAHEHF----VTSLD 387 (410)
T ss_dssp EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC------CTTSC---CCEEEECCSSC----EEEEE
T ss_pred EEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE------CCCCc---eEEEEcCCCCc----EEEEE
Confidence 9999987 78899999999999999999999999999999999994 43433 37889999988 99999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 005235 686 FHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 686 fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+|++++|+||+.||+|+||++
T Consensus 388 ~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 388 FHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECSSSSCEEEEETTSEEEEEC-
T ss_pred EcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999985
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=342.23 Aligned_cols=267 Identities=17% Similarity=0.209 Sum_probs=237.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEE--EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLR--VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~--~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
+.++++||.|++|+||++.++++.. .+.+ ...|.+++|++++ ..+++++.|++|++||+.++..
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~------------ 114 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQ------------ 114 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE------------
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCE------------
Confidence 4589999999999999998876543 4444 7889999999999 4788888999999999876521
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
...+..|...+.+++|+|+|++|++++.++ .|.+|++..+... ..+ .+...|.
T Consensus 115 ----------------------~~~~~~~~~~~~~~~~spdg~~l~~g~~dg---~v~i~~~~~~~~~-~~~~~~~~~v~ 168 (321)
T 3ow8_A 115 ----------------------IKSIDAGPVDAWTLAFSPDSQYLATGTHVG---KVNIFGVESGKKE-YSLDTRGKFIL 168 (321)
T ss_dssp ----------------------EEEEECCTTCCCCEEECTTSSEEEEECTTS---EEEEEETTTCSEE-EEEECSSSCEE
T ss_pred ----------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCC---cEEEEEcCCCcee-EEecCCCceEE
Confidence 112446778899999999999999999988 9999999998877 777 7888999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
+++|+|++++|++++ |+.|++||+.+++++..+.+|...|.+++|+|+|.+|++|+.|+.|++||+..+ .+...+.+|
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h 247 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGH 247 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCC
Confidence 999999999999998 999999999999999999999999999999999999999999999999999877 678899999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
...|.+++|+|++.+|++|+.||+|+|||+ .+.. ++..+.+|... |.+++|+|++.+|++++.||+|
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~------~~~~---~~~~~~~h~~~----v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDV------GTRT---CVHTFFDHQDQ----VWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET------TTTE---EEEEECCCSSC----EEEEEECTTSSEEEEEETTCCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeC------CCCE---EEEEEcCCCCc----EEEEEECCCCCEEEEEeCCCeE
Confidence 999999999999999999999999999954 3333 47889999887 9999999999999999999999
Q ss_pred EEEeC
Q 005235 703 RLYCH 707 (707)
Q Consensus 703 rlWdl 707 (707)
+|||+
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-38 Score=337.64 Aligned_cols=268 Identities=16% Similarity=0.211 Sum_probs=235.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+|||+.+++++..+.. ...|.+++|+|++ ..+++++.|+.|++|++.+.....
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~------------- 133 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNV------------- 133 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBSC-------------
T ss_pred CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCcc-------------
Confidence 4899999999999999999999988887 7889999999999 478888999999999987642110
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
.....+.+|.+.|.++.|++++. |++++.|+ .|++||+.++... ..+ .|.+.|.+++
T Consensus 134 -----------------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~---~i~~wd~~~~~~~-~~~~~h~~~v~~~~ 191 (340)
T 1got_B 134 -----------------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT---TCALWDIETGQQT-TTFTGHTGDVMSLS 191 (340)
T ss_dssp -----------------EEEEEEECCSSCEEEEEEEETTE-EEEEETTS---CEEEEETTTTEEE-EEECCCSSCEEEEE
T ss_pred -----------------eeEEEecCCCccEEEEEECCCCc-EEEEECCC---cEEEEECCCCcEE-EEEcCCCCceEEEE
Confidence 00123568999999999998765 88999888 9999999999887 778 8999999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HP 623 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~ 623 (707)
|+|++.+|++++ |++|++||+.++.++.++.+|...|++++|+|+|.+|++|+.||.|++||++.. .++..+.. +.
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~ 270 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNII 270 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcc
Confidence 999999999998 999999999999999999999999999999999999999999999999999876 55555542 23
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
..|++++|+|++++|++|+.||.|+|||+ .... ++..+.+|... |.+++|+|++.+|+|||.||+|+
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~------~~~~---~~~~~~~h~~~----v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKAD---RAGVLAGHDNR----VSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET------TTCC---EEEEEECCSSC----EEEEEECTTSSCEEEEETTSCEE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEc------ccCc---EeeEeecCCCc----EEEEEEcCCCCEEEEEcCCccEE
Confidence 57999999999999999999999999954 3333 37789999988 99999999999999999999999
Q ss_pred EEe
Q 005235 704 LYC 706 (707)
Q Consensus 704 lWd 706 (707)
|||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ecC
Confidence 997
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-37 Score=332.70 Aligned_cols=271 Identities=16% Similarity=0.209 Sum_probs=236.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++||.||+|+|||..+++....+.. ...|.+++|+|++ ..+++++.|+.+.+|++........
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~~------------ 143 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNENM------------ 143 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCCS------------
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccccc------------
Confidence 4899999999999999999999888877 7789999999999 4788888999999999765321100
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
......+..|...|.+++|++++.+|++++.|+ +|++||+.++... ..+ .|...|.+++
T Consensus 144 ----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~---~v~lwd~~~~~~~-~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 144 ----------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDG---TCALWDVESGQLL-QSFHGHGADVLCLD 203 (354)
T ss_dssp ----------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEE
T ss_pred ----------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCeEE-EEEcCCCCCeEEEE
Confidence 011123557999999999999999999999998 9999999999887 788 8999999999
Q ss_pred EeC--CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-
Q 005235 547 FHP--TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH- 622 (707)
Q Consensus 547 fsp--d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h- 622 (707)
|+| ++.+|++|+ |++|++||+++++++..+.+|...|++++|+|+|.+|++|+.|+.|++||++.. ..+..+..+
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~ 282 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKES 282 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCC
Confidence 988 468999988 999999999999999999999999999999999999999999999999999876 555555543
Q ss_pred -CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 623 -PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 623 -~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
...+.+++|+|++.+|++|+.|++|+|||+ .++. ++..+.+|... |.+++|+|++.+|++|+.||+
T Consensus 283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~------~~~~---~~~~l~~h~~~----v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDV------LKGS---RVSILFGHENR----VSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEET------TTCS---EEEEECCCSSC----EEEEEECTTSSCEEEEETTSE
T ss_pred cccceeEEEEeCCCCEEEEEECCCcEEEEEC------CCCc---eEEEEECCCCc----EEEEEECCCCCEEEEEcCCCC
Confidence 347899999999999999999999999954 3333 36788999988 999999999999999999999
Q ss_pred EEEEe
Q 005235 702 IRLYC 706 (707)
Q Consensus 702 IrlWd 706 (707)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-37 Score=353.02 Aligned_cols=339 Identities=17% Similarity=0.245 Sum_probs=285.4
Q ss_pred ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCC
Q 005235 297 SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKP 373 (707)
Q Consensus 297 synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp 373 (707)
.|+|++.+|++.+. ++.|+. ....++.+.++... +..+.++|+.
T Consensus 187 ~~~~~~~~l~~~~~d~~v~~w~~------------~~~~~~~~~~~~~~-------v~~~~~s~dg-------------- 233 (577)
T 2ymu_A 187 AFSPDGQTIASASDDKTVKLWNR------------NGQLLQTLTGHSSS-------VRGVAFSPDG-------------- 233 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT------------TSCEEEEEECCSSC-------EEEEEECTTS--------------
T ss_pred eecCCCCEEEEEcCCCEEEEEeC------------CCcEEEEEecCCCC-------EEEEEECCCC--------------
Confidence 69999999998554 344431 22334444444333 3556666554
Q ss_pred CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-
Q 005235 374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN- 451 (707)
Q Consensus 374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~- 451 (707)
.++++|+.|++|++|+. +++++..+.. ...|.+++|+|++ ..+++++.++.|++|+.....
T Consensus 234 ---------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~~~~ 296 (577)
T 2ymu_A 234 ---------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQLL 296 (577)
T ss_dssp ---------------SCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE
T ss_pred ---------------CEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCcEE
Confidence 47999999999999995 5778877776 7899999999999 478888899999999975432
Q ss_pred chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235 452 EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL 526 (707)
Q Consensus 452 ~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl 526 (707)
..+.++...+.++.+. +++++.++.+++|+..+.....+.+|...|.+++|+|+|.+|++++.++ .|++|+.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~v~~~~~ 373 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNR 373 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEET
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEcC
Confidence 2445677778877775 7888999999999998887777889999999999999999999999988 9999996
Q ss_pred CCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 005235 527 SKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 527 ~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.. ... ..+ .|...|.+++|+|++.+|++++ |+.|++||. +++++..+.+|...|++++|+|++.+|++++.|+.|
T Consensus 374 ~~-~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 NG-QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp TC-CEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CC-CEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 54 444 566 8899999999999999999998 899999995 577888999999999999999999999999999999
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
++||+. + +.+..+.+|...|++++|+|++++||+++.|++|+||+. ++ .++..+.+|... |+++
T Consensus 451 ~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-------~~---~~~~~~~~h~~~----v~~l 514 (577)
T 2ymu_A 451 KLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-------NG---QLLQTLTGHSSS----VRGV 514 (577)
T ss_dssp EEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-------TS---CEEEEEECCSSC----EEEE
T ss_pred EEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-------CC---CEEEEEeCCCCC----EEEE
Confidence 999974 3 678889999999999999999999999999999999953 22 247889999987 9999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 005235 685 KFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 685 ~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|+|++++||+++.||+|+|||+
T Consensus 515 ~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 515 AFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT
T ss_pred EEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999984
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=337.84 Aligned_cols=269 Identities=17% Similarity=0.206 Sum_probs=221.7
Q ss_pred CCcEEEEEeCCCcEEEEeCC------------CCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235 387 ACYLEYKGSTDGTVRIWEVE------------SGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~------------tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~ 454 (707)
++.++++++ |+++|+||.. .+.+...+.....|.+++|+|++ .+++++.|++|+|||+.++....
T Consensus 41 dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~ 117 (344)
T 4gqb_B 41 DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLI 117 (344)
T ss_dssp TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCE
T ss_pred CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCcee
Confidence 345788777 7788888732 12233344446789999999998 79999999999999987763321
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI 534 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~ 534 (707)
. ......+|.+.|++|+|+|+|++|++++.|+ .|+|||+.++... .
T Consensus 118 ------------------------~------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~-~ 163 (344)
T 4gqb_B 118 ------------------------V------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVL-S 163 (344)
T ss_dssp ------------------------E------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-E
T ss_pred ------------------------E------eeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEE-E
Confidence 0 0012458999999999999999999999998 9999999999888 8
Q ss_pred ee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEE
Q 005235 535 PF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPA-GDNLIVGSREGKLCWFD 608 (707)
Q Consensus 535 ~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwD 608 (707)
.+ .|.+.|.+++|+|++. +|++++ |++|++||+++++++..+. .+...+.+++|+|+ +.+|++|+.||.|++||
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 88 8999999999999985 677777 9999999999998887764 34456999999995 57889999999999999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs 687 (707)
++++ +++.++.+|...|++++|+|++ ++||+|+.||+|+||| +.+.. +..+.+|... |++++|+
T Consensus 244 ~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd------~~~~~----~~~~~~H~~~----V~~v~~s 308 (344)
T 4gqb_B 244 TKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD------SSLSE----LFRSQAHRDF----VRDATWS 308 (344)
T ss_dssp SCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC------TTCCE----EEEECCCSSC----EEEEEEC
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE------CCCCc----EEEEcCCCCC----EEEEEEe
Confidence 9987 7889999999999999999998 5899999999999994 44443 4467899987 9999999
Q ss_pred CCCC-EEEEEeCCCcEEEEeC
Q 005235 688 PRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 688 pdg~-~L~s~g~Dg~IrlWdl 707 (707)
|+++ +|+|+|.||+|++|++
T Consensus 309 p~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEEC
T ss_pred CCCCeEEEEEcCCCeEEEEEC
Confidence 9987 5679999999999985
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=331.85 Aligned_cols=279 Identities=20% Similarity=0.271 Sum_probs=225.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEE--E-e-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRV--L-E-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l-~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+|++|+.|++|+||++.++..... + . +...|.+|+|+|++ ..|++++.|++|++|++..+...
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~----------- 96 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFE----------- 96 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EE-----------
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeE-----------
Confidence 4899999999999999998875433 2 2 27899999999999 47888889999999997654210
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGL 541 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~ 541 (707)
....+.+|...|.+++|+|+|++|++++.|+ .|++||+...... ...+ .|...
T Consensus 97 ---------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 97 ---------------------CVTTLEGHENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEEEEEECCCCSC
T ss_pred ---------------------EEEEccCCCCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEEEEEecCcCCC
Confidence 0123568999999999999999999999998 9999999876432 1345 78899
Q ss_pred eEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----
Q 005235 542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS----- 613 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~----- 613 (707)
|.+++|+|++.+|++++ |+.|++||+.++. +..++.+|...|.+++|+|+|.+|++|+.|+.|++||+....
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 99999999999999998 9999999998875 457888999999999999999999999999999999974321
Q ss_pred ---------cceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235 614 ---------KPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD 683 (707)
Q Consensus 614 ---------~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~ 683 (707)
.++.++.+ |...|.+++|+|++.+||+++.|++|+||+.....+............+.+|... |++
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~ 308 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD----VNC 308 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC----EEE
T ss_pred eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc----EeE
Confidence 12334444 8899999999999999999999999999976533221111111112334688877 999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235 684 CKFHPRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 684 l~fspdg~-~L~s~g~Dg~IrlWdl 707 (707)
++|+|+++ +|||||.||+|+||++
T Consensus 309 v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 309 VAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEEE
T ss_pred eEEeCCCceEEEEcCCCCcEEEEEe
Confidence 99999985 9999999999999984
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-36 Score=320.45 Aligned_cols=266 Identities=14% Similarity=0.163 Sum_probs=228.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+|||+.++.++..+.. ..+|.+++|+|++ ..|++++.|+.|++||+.++..
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~--------------- 89 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK--------------- 89 (304)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE---------------
T ss_pred CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcE---------------
Confidence 4899999999999999999999999987 7899999999999 4788899999999999876532
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+.+|...|.+++|+|++.+|++++.|+ +|++||+.++......+ .|...|.+++
T Consensus 90 -------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 90 -------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp -------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred -------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCC---eEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 123568999999999999999999999998 99999998875543566 8999999999
Q ss_pred EeC-CCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 547 FHP-TRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHP--AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 547 fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~sp--dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
|+| ++.+|++|+ |++|++||+.++.....+. .+...+.+++|+| ++.+|++|+.|+.|++||++++ .++.++.+
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~ 226 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEG 226 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCC
Confidence 999 578899988 9999999998876655555 4557799999987 6789999999999999999987 78999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC--EEEEEeCC
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP--WLFTAGAD 699 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~--~L~s~g~D 699 (707)
|...|.+++|+|++++|++|+.||+|+|||. .+.. ++..+..|... +.+++|+|++. +|++|+.|
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~------~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS------STYK---VEKTLNVGLER----SWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEET------TTCC---EEEEECCSSSS----EEEEEECTTCGGGCEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCeEEEEEC------CCCc---eeeeccCCCcc----EEEEEECCCCCceEEEEecCC
Confidence 9999999999999999999999999999954 3443 37788888877 99999999886 57777766
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
| +.+|++
T Consensus 294 g-~~~~~~ 300 (304)
T 2ynn_A 294 G-FTVLSL 300 (304)
T ss_dssp E-EEEEEC
T ss_pred c-eEEEEe
Confidence 5 555543
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-37 Score=335.36 Aligned_cols=301 Identities=17% Similarity=0.238 Sum_probs=247.2
Q ss_pred ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235 325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE 404 (707)
Q Consensus 325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd 404 (707)
|.|....+.+.+.+|...| ..+.|+|+. .+|++||.||+|+|||
T Consensus 51 ~~~~~~~~~~~l~gH~~~V-------~~~~~sp~~-----------------------------~~l~s~s~D~~v~iWd 94 (380)
T 3iz6_a 51 FNPTDLVCCRTLQGHSGKV-------YSLDWTPEK-----------------------------NWIVSASQDGRLIVWN 94 (380)
T ss_dssp CCCCCCEEEEEECCCSSCE-------EEEEECTTS-----------------------------SCEEEEETTSEEEEEE
T ss_pred cccceeEEeecccccccEE-------EEEEEcCCC-----------------------------CEEEEEeCCCeEEEEE
Confidence 4455555666665555544 778888765 4899999999999999
Q ss_pred CCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC
Q 005235 405 VESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH 483 (707)
Q Consensus 405 ~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~ 483 (707)
+.+++++..+.. ...|.+++|+|++ ..+++++.|+.|++|++.+..... + .
T Consensus 95 ~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~--------------------~-------~ 146 (380)
T 3iz6_a 95 ALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD--------------------G-------N 146 (380)
T ss_dssp TTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC--------------------C-------S
T ss_pred CCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc--------------------C-------C
Confidence 999999998887 7889999999999 478888899999999986542100 0 0
Q ss_pred CccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeC-CCCEEE
Q 005235 484 DKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHP-TRSIFF 555 (707)
Q Consensus 484 ~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fsp-d~~~l~ 555 (707)
......+.+|.+.|.++.|+|+ +..|++++.|+ +|++||+.++... ..+ .|...|.+++|++ ++.+|+
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~---~i~~wd~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ---TCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS---CEEEECTTTCCEE-EEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCC---cEEEEEcCCCcEE-EEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 0011235589999999999996 45799999988 9999999998776 433 5778899999987 788999
Q ss_pred EEe-CCeEEEEECC-CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-------CCE
Q 005235 556 VST-KKNIRVYDLL-KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-------KDI 626 (707)
Q Consensus 556 v~s-dg~I~iwDl~-~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-------~~I 626 (707)
+|+ |++|++||++ .++.+..+.+|...|.+++|+|+|.+|++|+.||+|++||+.++ .++..+..+. ..|
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSC
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCce
Confidence 988 9999999998 45778889999999999999999999999999999999999987 6677776543 248
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe----eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL----RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l----~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
++++|+|+|.+|++|+.||.|+|||. ..... +..+ .+|... |.+++|+|++.+|+|||.||+|
T Consensus 302 ~~~~~s~~g~~l~~g~~dg~i~vwd~------~~~~~---~~~~~~~~~~h~~~----v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYSNGDCYVWDT------LLAEM---VLNLGTLQNSHEGR----ISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp SEEEECSSSSEEEEECTTSCEEEEET------TTCCE---EEEECCSCSSCCCC----CCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEC------CCCce---EEEEecccCCCCCc----eEEEEECCCCCEEEEeeCCCCE
Confidence 99999999999999999999999954 33333 3334 578877 9999999999999999999999
Q ss_pred EEEeC
Q 005235 703 RLYCH 707 (707)
Q Consensus 703 rlWdl 707 (707)
+||++
T Consensus 369 ~iW~~ 373 (380)
T 3iz6_a 369 KIWAF 373 (380)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99985
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.8e-37 Score=329.51 Aligned_cols=268 Identities=17% Similarity=0.209 Sum_probs=219.6
Q ss_pred cEEEEEeC------CCcEEEEeCCCCeEE-----EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235 389 YLEYKGST------DGTVRIWEVESGRCL-----RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 389 ~~l~sgs~------DgtVrIWd~~tg~~l-----~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~ 457 (707)
.+|++||. |++|++|+..++... ....+...|.+|+|+|++ .+++++.+++|+|||+.++.....
T Consensus 55 ~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~-- 130 (357)
T 4g56_B 55 ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLV-- 130 (357)
T ss_dssp CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CC--
T ss_pred CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEE--
Confidence 48999997 788999998887543 334457889999999998 688999999999999876532110
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF- 536 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~- 536 (707)
......+|...|.+++|+|+|++|++++.|+ .|+|||+.++... ..+
T Consensus 131 ----------------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~-~~~~ 178 (357)
T 4g56_B 131 ----------------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVL-KSYN 178 (357)
T ss_dssp ----------------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEE-EEEC
T ss_pred ----------------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEE-EEEc
Confidence 0012447999999999999999999999998 9999999999887 788
Q ss_pred ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC
Q 005235 537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~ 611 (707)
.|...|.+++|+|++. +|++++ |+.|++||+++++++..+. .+...+.+++|+|++ .+|++|+.|+.|++||+.+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 8999999999999875 566666 8999999999987765544 455679999999975 6889999999999999998
Q ss_pred CCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-C
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-R 689 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-d 689 (707)
+ +++..+.+|...|++++|+|++ ++||+|+.||+|+||| +.+... + ...+|... |++|+|+| +
T Consensus 259 ~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd------~~~~~~---~-~~~~H~~~----V~~vafsP~d 323 (357)
T 4g56_B 259 P-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD------ADFSEV---F-RDLSHRDF----VTGVAWSPLD 323 (357)
T ss_dssp G-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC------TTSCEE---E-EECCCSSC----EEEEEECSSS
T ss_pred C-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE------CCCCcE---e-EECCCCCC----EEEEEEeCCC
Confidence 7 7889999999999999999987 5899999999999994 444432 3 34589887 99999999 7
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 005235 690 QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 690 g~~L~s~g~Dg~IrlWdl 707 (707)
+.+|+|+|.||+|++|++
T Consensus 324 ~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 324 HSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp TTEEEEEETTSCEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEC
Confidence 899999999999999986
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=318.49 Aligned_cols=275 Identities=20% Similarity=0.227 Sum_probs=213.8
Q ss_pred EEEEEeCCCcEEEEeCCCC--eEEEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESG--RCLRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg--~~l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
++++|+.|++|+||++.++ .++..+. +...|.+|+|+|++ ..|++++.|++|+||++.......
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~---------- 94 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT---------- 94 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-----------------
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc----------
Confidence 8999999999999999875 5566662 47789999999999 478888899999999975421000
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----ceeeeee-ccC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----LSHRIPF-KLH 539 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----~~~~~~~-~~~ 539 (707)
........+.+|...|.+++|+|+|++|++++.|+ .|+|||+... ... ..+ .|.
T Consensus 95 -----------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~---~v~iwd~~~~~~~~~~~-~~~~~h~ 153 (330)
T 2hes_X 95 -----------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK---SVWIWETDESGEEYECI-SVLQEHS 153 (330)
T ss_dssp -----------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS---CEEEEECCTTCCCCEEE-EEECCCS
T ss_pred -----------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC---EEEEEeccCCCCCeEEE-EEeccCC
Confidence 00011123568999999999999999999999998 9999999532 223 456 889
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCC-
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPA--GDNLIVGSREGKLCWFDMDLSS- 613 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spd--g~~L~sGs~Dg~I~vwDl~~~~- 613 (707)
..|.+++|+|++.+|++++ |++|++||+.++ +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||+....
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 9999999999999999998 999999998876 678899999999999999998 7799999999999999986531
Q ss_pred ------cceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-CCCCCeeEEE
Q 005235 614 ------KPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-SNGRGVMDCK 685 (707)
Q Consensus 614 ------~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-~~~~gV~~l~ 685 (707)
.+...+.. |...|.+++|++++ +||+|+.||+|+||+.. .+........+.+|.. . |.+++
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~------~~~~~~~~~~~~~h~~~~----v~~v~ 302 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV------DGEWKVFAKRALCHGVYE----INVVK 302 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE------TTEEEEEEEESCTTTTSC----EEEEE
T ss_pred cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC------CCceEEEeccccccccce----EEEEE
Confidence 23344544 89999999999765 89999999999999643 2211111233467775 5 99999
Q ss_pred EcC--CCCEEEEEeCCCcEEEEeC
Q 005235 686 FHP--RQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 686 fsp--dg~~L~s~g~Dg~IrlWdl 707 (707)
|+| ++.+|+|||.||+|+||++
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC
T ss_pred EecCCCceEEEEecCCCcEEEEEe
Confidence 999 7899999999999999985
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-35 Score=323.37 Aligned_cols=268 Identities=16% Similarity=0.182 Sum_probs=229.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------------CcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG-------------------EAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-------------------~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
++.++++|+ +++++||++.+|+++..+... ..|.+++|+|++ ..|++++.|+.|++||+
T Consensus 75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~ 152 (393)
T 1erj_A 75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDI 152 (393)
T ss_dssp TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEET
T ss_pred CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEEEEC
Confidence 345888876 789999999999998877541 149999999999 47888889999999997
Q ss_pred CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
.++.. ...+.+|...|.+++|+|+|.+|++++.|+ .|++||+.
T Consensus 153 ~~~~~----------------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~v~iwd~~ 195 (393)
T 1erj_A 153 ENRKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDR---TVRIWDLR 195 (393)
T ss_dssp TTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETT
T ss_pred CCCcE----------------------------------EEEEccCCCCEEEEEEcCCCCEEEEecCCC---cEEEEECC
Confidence 65421 123568999999999999999999999998 99999999
Q ss_pred CCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEEEE-------eCCCCCeEEEEEcCCCCEEEEE
Q 005235 528 KKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIKKL-------ETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 528 ~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l-------~~~~~~I~sl~~spdg~~L~sG 598 (707)
++... ..+.+...+.+++|+| ++.+|++++ |+.|++||+.++.++..+ .+|...|.+++|+|+|.+|++|
T Consensus 196 ~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 196 TGQCS-LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp TTEEE-EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred CCeeE-EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 98876 6667778899999999 899999998 999999999999888777 5688899999999999999999
Q ss_pred ECCCcEEEEECCCCC-----------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235 599 SREGKLCWFDMDLSS-----------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL 667 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~-----------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl 667 (707)
+.|+.|++||+.... .+...+.+|...|.+++|+|++.+|++|+.||+|+|||. .+.. ++
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~------~~~~---~~ 345 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK------KSGN---PL 345 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET------TTCC---EE
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC------CCCe---EE
Confidence 999999999997531 345678899999999999999999999999999999954 3333 47
Q ss_pred EEeeCCCCCCCCCeeEEEEcC------CCCEEEEEeCCCcEEEEeC
Q 005235 668 EILRGHTSSNGRGVMDCKFHP------RQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 668 ~~l~gh~~~~~~gV~~l~fsp------dg~~L~s~g~Dg~IrlWdl 707 (707)
..+.+|... |.+++|++ ++.+|+|||.||+|+||++
T Consensus 346 ~~l~~h~~~----v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 346 LMLQGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEECCCCCC----EEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 889999987 99999986 6889999999999999984
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-35 Score=312.41 Aligned_cols=263 Identities=14% Similarity=0.199 Sum_probs=221.9
Q ss_pred cEEEEEeCCCcEEEEeCCC-----CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVES-----GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~t-----g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.++++||.|++|++|++.+ +.++..+.+ ...|.+++|+|++ ..+++++.|++|++||+.++..
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~---------- 99 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGET---------- 99 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----------
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCe----------
Confidence 5899999999999999864 445667766 7899999999999 4788899999999999876521
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
...+.+|...|.+++|+|++.+|++++.|+ .|++||+... .. ..+ .|...
T Consensus 100 ------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~~~-~~-~~~~~h~~~ 150 (319)
T 3frx_A 100 ------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDK---TIKVWTIKGQ-CL-ATLLGHNDW 150 (319)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTS---CEEEEETTSC-EE-EEECCCSSC
T ss_pred ------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCC-eE-EEEeccCCc
Confidence 123568999999999999999999999998 9999999754 33 555 89999
Q ss_pred eEEEEEeCCC------CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 542 PVSSVFHPTR------SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 542 V~~v~fspd~------~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
|.+++|+|.. ..|++++ |+.|++||+.+.+....+.+|...|.+++|+|+|.+|++|+.||.|++||+.+. +
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~ 229 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-K 229 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-E
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c
Confidence 9999999954 4788887 999999999999999999999999999999999999999999999999999876 7
Q ss_pred ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee--------CCCCCCCCCeeEEEE
Q 005235 615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR--------GHTSSNGRGVMDCKF 686 (707)
Q Consensus 615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~--------gh~~~~~~gV~~l~f 686 (707)
++..+..+ ..|.+++|+|++.+|++++.++ |++|++.. ... +..+. .|... |.+++|
T Consensus 230 ~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~------~~~---~~~~~~~~~~~~~~~~~~----v~~~~~ 294 (319)
T 3frx_A 230 AMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDP------QYL---VDDLRPEFAGYSKAAEPH----AVSLAW 294 (319)
T ss_dssp EEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETT------EEE---EEEECCCCTTCCGGGCCC----EEEEEE
T ss_pred EEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc------Cee---eeccCccccccccCcCcc----eeEEEE
Confidence 77778754 6799999999999999888655 99996532 111 22222 23333 999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 005235 687 HPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 687 spdg~~L~s~g~Dg~IrlWdl 707 (707)
+|+|++|++|+.||+|+||++
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEeecCceEEEEEE
Confidence 999999999999999999985
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=329.94 Aligned_cols=280 Identities=16% Similarity=0.231 Sum_probs=240.6
Q ss_pred CCCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235 287 PKPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV 359 (707)
Q Consensus 287 pk~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~ 359 (707)
++..|.||.. .|+|++.+|++++. |..+ |.......++.+.++.. .+.++.|+|.+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~----------Dg~i~vwd~~~~~~~~~l~~h~~-------~V~~v~~~~~~ 162 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASE----------DATIKVWDYETGDFERTLKGHTD-------SVQDISFDHSG 162 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEES----------SSCEEEEETTTCCCCEEECCCSS-------CEEEEEECTTS
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEeccCC-------cEEEEEEcCCC
Confidence 3567889976 59999999999654 4443 33344444555544444 34677777654
Q ss_pred ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe
Q 005235 360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV 438 (707)
Q Consensus 360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~ 438 (707)
.++++|+.||+|+|||+.+++++.++.. ...|.+++|+|+++ .+++++.
T Consensus 163 -----------------------------~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~ 212 (410)
T 1vyh_C 163 -----------------------------KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASR 212 (410)
T ss_dssp -----------------------------SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEET
T ss_pred -----------------------------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeC
Confidence 4899999999999999999999988876 78999999999994 7889999
Q ss_pred CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235 439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES 518 (707)
Q Consensus 439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~ 518 (707)
|++|++||+.++.. ...+.+|...|.+++|+++|.+|++++.|+
T Consensus 213 D~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~-- 256 (410)
T 1vyh_C 213 DKTIKMWEVQTGYC----------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQ-- 256 (410)
T ss_dssp TSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCeEEEEECCCCcE----------------------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCC--
Confidence 99999999876522 113558999999999999999999999998
Q ss_pred cEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--------------------CCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235 519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--------------------RSIFFVST-KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--------------------~~~l~v~s-dg~I~iwDl~~~~~~~~l 576 (707)
.|++||+.++... ..+ .|...|.+++|+|+ +.+|++|+ |++|++||+.++.++.++
T Consensus 257 -~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 257 -TVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp -CEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -eEEEEECCCCcee-eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 9999999998887 777 89999999999996 67899988 999999999999999999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
.+|..+|.+++|+|+|.+|++|+.||.|++||+.++ +++.++.+|...|++++|+|++++||+|+.||+|+||+.
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999999876 788999999999999999999999999999999999953
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-34 Score=305.16 Aligned_cols=266 Identities=17% Similarity=0.227 Sum_probs=231.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+||++.++++...+.. ...|.+++|+|++ ..|++++.|+.|++||+.++..
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~--------------- 99 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKC--------------- 99 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE---------------
T ss_pred CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcE---------------
Confidence 4899999999999999999999988876 7899999999999 4788888999999999876421
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+.+|...|.+++|+|++++|++++.|+ .|++||+.++... ..+ .|...|.+++
T Consensus 100 -------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 100 -------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVKTGKCL-KTLPAHSDPVSAVH 156 (312)
T ss_dssp -------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCCEE-EEECCCSSCEEEEE
T ss_pred -------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCEEE-EEecCCCCcEEEEE
Confidence 113557899999999999999999999998 9999999998887 777 8889999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
|+|++.+|++++ |+.|++||+.+++.+..+. .+...+.+++|+|+|.+|++|+.||.|++||+.++ +++..+.+|..
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~ 235 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKN 235 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCC
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCC
Confidence 999999999998 9999999999998887765 34567999999999999999999999999999877 77888888876
Q ss_pred CEEE--EEE-cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe--CC
Q 005235 625 DITN--VAF-HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG--AD 699 (707)
Q Consensus 625 ~I~~--vaf-spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g--~D 699 (707)
.+.+ ..| .+++.+|++|+.||.|+||++ .+.. .+..+.+|... |.+++|+|++++|++++ .|
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~------~~~~---~~~~~~~h~~~----v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------QTKE---IVQKLQGHTDV----VISTACHPTENIIASAALEND 302 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEET------TTCC---EEEEECCCSSC----EEEEEECSSSSEEEEEECTTT
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEEC------CCch---hhhhhhccCCc----EEEEeecCcCCceEEEEccCC
Confidence 4332 234 467889999999999999954 4443 37889999988 99999999999999997 69
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
++|++|+.
T Consensus 303 ~~i~~W~~ 310 (312)
T 4ery_A 303 KTIKLWKS 310 (312)
T ss_dssp CCEEEEEC
T ss_pred ccEEEecC
Confidence 99999974
No 19
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=322.15 Aligned_cols=317 Identities=14% Similarity=0.154 Sum_probs=244.0
Q ss_pred cccccccccce-----eeeeEEEcCccccceeecCCCCCCCCCCC-CCCCcccCC----------------------CCc
Q 005235 338 AYENAVKDSFE-----RCMDLYLCPRVRKKRVNIDPETLKPKLPS-RKDLKPYPV----------------------ACY 389 (707)
Q Consensus 338 ~~~~~i~e~f~-----rcldL~l~pr~~k~~lnidp~~llp~lp~-~~~l~pfp~----------------------~~~ 389 (707)
.|+..+.+.+. |||+++++|+..+.++++.+....|..|. +...+++|. ...
T Consensus 25 ~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~ 104 (401)
T 4aez_A 25 DYSESVAEACGFDLNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNL 104 (401)
T ss_dssp -------------CCEEEEEECSCCCCCCCCCC-----------------CCCCCSCSEEEECTTCCCCTTCBCEEECTT
T ss_pred HHHHHHHHHcCCCccCcEEeeCCCCCCCcCcccchhhcccccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCC
Confidence 45556666555 99999999998887777766655554443 222222221 134
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.+++++.||+|+||++.++++...+.. ...|.+++|+|++ ..|++++.++.|++|++.++..
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--------------- 168 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTK--------------- 168 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE---------------
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeE---------------
Confidence 577889999999999999999888876 7899999999999 4788888899999999866421
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
...+.+|...|.+++| ++.+|++++.|+ .|++||+.........+ .|.+.|.+++
T Consensus 169 -------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 169 -------------------LRTMAGHQARVGCLSW--NRHVLSSGSRSG---AIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp -------------------EEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred -------------------EEEecCCCCceEEEEE--CCCEEEEEcCCC---CEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 1134589999999999 567999999998 99999999544432667 8999999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE--CCCcEEEEECCCCCcceEEeecC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGS--REGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs--~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
|+|++.+|++++ |+.|++||+.+++++..+..|...|.+++|+|++ .++++|+ .|+.|++||+.++ .++..+. |
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~ 302 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-A 302 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-C
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-C
Confidence 999999999998 8999999999999999999999999999999977 4556654 7999999999977 6777776 6
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 623 PKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
...|.+++|+|++++|++++ .||.|+||++. ... ...+..+.+|... |.+++|+|++++|++++.||
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~------~~~-~~~~~~~~~h~~~----v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS------SSG-LTKQVDIPAHDTR----VLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE------TTE-EEEEEEEECCSSC----CCEEEECTTSSEEEEECTTS
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC------Ccc-ceeEEEecCCCCC----EEEEEECCCCCEEEEEeCCC
Confidence 67899999999999999854 89999999654 221 2345567899887 99999999999999999999
Q ss_pred cEEEEeC
Q 005235 701 VIRLYCH 707 (707)
Q Consensus 701 ~IrlWdl 707 (707)
+|++|++
T Consensus 372 ~i~iw~~ 378 (401)
T 4aez_A 372 NLKFWRV 378 (401)
T ss_dssp EEEEEEC
T ss_pred cEEEEEC
Confidence 9999985
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-34 Score=310.03 Aligned_cols=275 Identities=17% Similarity=0.194 Sum_probs=219.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235 387 ACYLEYKGSTDGTVRIWEVES-------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~ 458 (707)
++.+|++|+.|++|+|||+.+ +.+...+.+ ...|.+++|+|++ ..+++++.|++|++||+.++..
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~------ 110 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTT------ 110 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCE------
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcE------
Confidence 557999999999999999874 345666665 7899999999999 4688888999999999876521
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
...+.+|...|.+++|+|+|.+|++++.|+ .|++||+...... ...
T Consensus 111 ----------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---~i~~wd~~~~~~~-~~~~~ 158 (343)
T 2xzm_R 111 ----------------------------YKRFVGHQSEVYSVAFSPDNRQILSAGAER---EIKLWNILGECKF-SSAEK 158 (343)
T ss_dssp ----------------------------EEEEECCCSCEEEEEECSSTTEEEEEETTS---CEEEEESSSCEEE-ECCTT
T ss_pred ----------------------------EEEEcCCCCcEEEEEECCCCCEEEEEcCCC---EEEEEeccCCcee-eeecc
Confidence 123568999999999999999999999998 9999999854332 222
Q ss_pred -ccCCCeEEEEEeCCC----------CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 005235 537 -KLHGLPVSSVFHPTR----------SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 537 -~~~~~V~~v~fspd~----------~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.|...|.+++|+|++ .+|++++ |+.|++||. ..+....+.+|...|.+++|+|+|.+|++|+.||.|
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence 577889999999987 6888888 999999994 567788899999999999999999999999999999
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC--CC--CcccceEEeeCCCCCCCCC
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN--QN--PLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~--~~--~~~~pl~~l~gh~~~~~~g 680 (707)
++||+.....+...+. +...|.+++|+|++.+++++ .|+.|+||++....... .. ..........+|...
T Consensus 238 ~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 311 (343)
T 2xzm_R 238 LIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ---- 311 (343)
T ss_dssp EEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC----
T ss_pred EEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc----
Confidence 9999965545555553 45679999999999988755 57789999764321110 00 000000112367666
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 681 VMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+++|+|++++|++|+.||+|++|++
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEE
Confidence 999999999999999999999999984
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=317.32 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=252.7
Q ss_pred EEEEEeCCCcEEEEeC----CCCe------EEEEEec-----------CCcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235 390 LEYKGSTDGTVRIWEV----ESGR------CLRVLEI-----------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTG 448 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~----~tg~------~l~~l~~-----------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~ 448 (707)
++++|+.||+|+||++ .+++ ....+.. .+.|.+++|+|++ ..|++++.++.|++|+..
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Confidence 8999999999999999 8888 4555554 4489999999999 478888899999999943
Q ss_pred CCCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCC---------------eEEEEEcCCC
Q 005235 449 LGNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKM---------------VSSVEWHRRG 506 (707)
Q Consensus 449 ~~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~---------------V~~v~~sp~g 506 (707)
.... .+..+...+.++.|. +++++.++.+.+|++....... +..+... +.+++|++++
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence 3221 344567778888775 7888899999999998665443 4445544 9999999875
Q ss_pred CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE
Q 005235 507 DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVS 584 (707)
Q Consensus 507 ~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~ 584 (707)
.+++++.++ .|.+|++.++... ..+ .+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+..|...|.
T Consensus 219 -~~~~~~~~g---~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 219 -KFVIPGPKG---AIFVYQITEKTPT-GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp -EEEEECGGG---CEEEEETTCSSCS-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred -EEEEEcCCC---eEEEEEcCCCcee-eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 588888877 9999999998776 677 8899999999999999999998 89999999999998999998999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC-----
Q 005235 585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN----- 659 (707)
Q Consensus 585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~----- 659 (707)
+++|+|++ +|++++.|+.|++||+.++ .++..+..|...|.+++|+|++.+|++++.||.|+||++.......
T Consensus 294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred EEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence 99999999 9999999999999999877 7888899999999999999999999999999999999876432100
Q ss_pred ------CCCcccceEEeeCCCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 660 ------QNPLIVPLEILRGHTS--SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 660 ------~~~~~~pl~~l~gh~~--~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
......++..+.+|.. . |.+++|+|++++|++++.||.|++|++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDY----IFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp -------CEECCEEEEECCTTCCCC----EEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccccccCcccchhhhhhcCcccCCc----eEEEEccCCCceEEEEecCceEEEEee
Confidence 0001125788888865 6 999999999999999999999999986
No 22
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=355.58 Aligned_cols=303 Identities=8% Similarity=0.052 Sum_probs=234.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-------------hhc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-------------EEQ 455 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-------------~~~ 455 (707)
.+|++|+.|++|+|||+.+++++..+.+.+.|++++|+|+++ .+++++.|+.|++||+.++.. ...
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~ 148 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence 389999999999999999999999998888999999999994 788889999999999987653 123
Q ss_pred ccccceeeeccc------ccccCCCCcEEEEecCCccceE-Eecc------------------CCCeEEEEEcCCCCEEE
Q 005235 456 RRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRH------------------FKMVSSVEWHRRGDYLS 510 (707)
Q Consensus 456 ~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h------------------~~~V~~v~~sp~g~~la 510 (707)
+|...+.+++|. +++++.++.+ +|++....... +..| ...|.+++|+|+|.+||
T Consensus 149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 227 (902)
T 2oaj_A 149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII 227 (902)
T ss_dssp SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence 456677777765 7788999999 99998765433 3333 57899999999999999
Q ss_pred EEeCCCCccEEEEEECCCCceeee-ee----c-------------cCCCeEEE---------------------------
Q 005235 511 TVMPAGESRAIFMHQLSKKLSHRI-PF----K-------------LHGLPVSS--------------------------- 545 (707)
Q Consensus 511 t~s~dg~~~~V~Iwdl~~~~~~~~-~~----~-------------~~~~V~~v--------------------------- 545 (707)
+++.|+ .|++||+.+++.... .+ . +...|.++
T Consensus 228 sgs~Dg---~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 228 TIHEDN---SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEETTC---CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEECCC---eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 999998 999999865432100 00 0 00011111
Q ss_pred --------------------------------------------------------------------------------
Q 005235 546 -------------------------------------------------------------------------------- 545 (707)
Q Consensus 546 -------------------------------------------------------------------------------- 545 (707)
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence
Q ss_pred ---------------------------------------------------------EEeCCCCEEEEEe-CCeEEEEEC
Q 005235 546 ---------------------------------------------------------VFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 546 ---------------------------------------------------------~fspd~~~l~v~s-dg~I~iwDl 567 (707)
+|+|++++|++|+ |++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 2235556677777 788888887
Q ss_pred CCCeEE----EEE--e-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----------------------
Q 005235 568 LKQRLI----KKL--E-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS----------------------- 613 (707)
Q Consensus 568 ~~~~~~----~~l--~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~----------------------- 613 (707)
.++.+. ..+ . +|...|.+|+|+|+|++||+|+.||+|+|||+.++.
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 765311 111 1 677889999999999999999999999999997651
Q ss_pred ---------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc--ceEEe
Q 005235 614 ---------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV--PLEIL 670 (707)
Q Consensus 614 ---------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~--pl~~l 670 (707)
.++.++.+|.+.|++|+|||+| +||+|+.|++|+|||+. +...+. .+..+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~------~~~~~~~~~~~~~ 617 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR------GPAIIYMENIREI 617 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT------TTEEEEEEEGGGT
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC------CCeEEEEeehhHh
Confidence 2467888999999999999999 99999999999999643 322210 11234
Q ss_pred e-CCCCCCCCCeeEEEEc-----CCC---CEEEEEeCCCcEEEEeC
Q 005235 671 R-GHTSSNGRGVMDCKFH-----PRQ---PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 671 ~-gh~~~~~~gV~~l~fs-----pdg---~~L~s~g~Dg~IrlWdl 707 (707)
. +|... |++++|+ ||| ++|++|+.||+|++|++
T Consensus 618 ~~gh~~~----V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 618 SGAQSAC----VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CSSCCCC----EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ccccccc----eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 3 88887 9999999 886 79999999999999985
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-34 Score=300.31 Aligned_cols=264 Identities=14% Similarity=0.191 Sum_probs=224.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeE---EEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRC---LRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~---l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.++++|+ ||.|+||++.++.. +..+. +...|.+++|+|++ ..+++++.++.|++|++.++...
T Consensus 64 ~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~--------- 132 (337)
T 1gxr_A 64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR--------- 132 (337)
T ss_dssp SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E---------
T ss_pred cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcc---------
Confidence 4888888 99999999987653 33333 37899999999999 47888888999999998764211
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
.......|...|.+++|+|++++|++++.++ .|++||+.++... ..+ .|.+.
T Consensus 133 -----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~~~~-~~~~~~~~~ 185 (337)
T 1gxr_A 133 -----------------------IKAELTSSAPACYALAISPDSKVCFSCCSDG---NIAVWDLHNQTLV-RQFQGHTDG 185 (337)
T ss_dssp -----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSC
T ss_pred -----------------------eeeecccCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCcee-eeeecccCc
Confidence 0113557889999999999999999999988 9999999998877 777 78999
Q ss_pred eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
|.+++|+|++.+|++++ |+.|++||+.+++.+..+. +...+.+++|+|+|.+|++|+.++.|++||+... . ...+.
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~-~~~~~ 262 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-D-KYQLH 262 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-C-EEEEC
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-C-eEEEc
Confidence 99999999999999998 8999999999999888775 5678999999999999999999999999999876 3 45678
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
.|...|.+++|+|++++|++++.||.|++|+. .+... + ....|... |.+++|+|++.+|++++.||
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~------~~~~~---~-~~~~~~~~----v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------PYGAS---I-FQSKESSS----VLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEET------TTCCE---E-EEEECSSC----EEEEEECTTSCEEEEEETTS
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEEC------CCCeE---E-EEecCCCc----EEEEEECCCCCEEEEecCCC
Confidence 89999999999999999999999999999954 33332 2 23346665 99999999999999999999
Q ss_pred cEEEEeC
Q 005235 701 VIRLYCH 707 (707)
Q Consensus 701 ~IrlWdl 707 (707)
.|++|++
T Consensus 329 ~i~iw~~ 335 (337)
T 1gxr_A 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999985
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=309.02 Aligned_cols=224 Identities=17% Similarity=0.231 Sum_probs=205.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.|++|+|||+.+++++..+.. ...+.+++|+|++ ..|++++.++.|++|++.++...
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~-------------- 157 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE-------------- 157 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE--------------
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee--------------
Confidence 4899999999999999999999998887 6789999999999 47888888999999998765321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
..+..|...|.+++|+|+|++|++++.|+ .|++||+.++... ..+ .|...|.+++
T Consensus 158 --------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg---~i~iwd~~~~~~~-~~~~~h~~~v~~l~ 213 (321)
T 3ow8_A 158 --------------------YSLDTRGKFILSIAYSPDGKYLASGAIDG---IINIFDIATGKLL-HTLEGHAMPIRSLT 213 (321)
T ss_dssp --------------------EEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSCCCEEE
T ss_pred --------------------EEecCCCceEEEEEECCCCCEEEEEcCCC---eEEEEECCCCcEE-EEEcccCCceeEEE
Confidence 12446788899999999999999999998 9999999999887 778 8899999999
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
|+|++.+|++++ |++|++||+.+++++.++.+|...|.+++|+|+|.+|++|+.|+.|++||+.++ .++.++.+|...
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~ 292 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQDQ 292 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSC
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCCCc
Confidence 999999999998 899999999999999999999999999999999999999999999999999977 788999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
|++++|+|++.+|++++.||+|+|||.
T Consensus 293 v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 293 VWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999964
No 25
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-34 Score=331.19 Aligned_cols=388 Identities=12% Similarity=0.108 Sum_probs=280.1
Q ss_pred CCCCCCCcc------ccCC--CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEc
Q 005235 288 KPKLPGHEE------SYNP--SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLC 356 (707)
Q Consensus 288 k~~lpgh~~------synP--~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~ 356 (707)
...+.+|.. +|+| ++++|++.+ .++.|+........ +.....+..+..+. ..+..+.|+
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~~~~~~~-------~~v~~~~~s 125 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SVEVNVKSEFQVLA-------GPISDISWD 125 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EEEEEEEEEEECCS-------SCEEEEEEC
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cccccccchhhccc-------ccEEEEEEe
Confidence 345666754 4999 999999844 45556532110000 00112233333332 334677788
Q ss_pred Cccccc-----------eeec-CCCCCCCCCCCCC----CCcccCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec-CC
Q 005235 357 PRVRKK-----------RVNI-DPETLKPKLPSRK----DLKPYPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI-GE 418 (707)
Q Consensus 357 pr~~k~-----------~lni-dp~~llp~lp~~~----~l~pfp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~ 418 (707)
|+.+.. .+.+ +....+..+..+. .+. |..++ .++++|+.||+|++||+.+++++..+.. ..
T Consensus 126 ~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 204 (615)
T 1pgu_A 126 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH-LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK 204 (615)
T ss_dssp TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE-ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred CCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE-ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC
Confidence 876532 2221 3223232232221 122 44444 4899999999999999999999999886 55
Q ss_pred ---cEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCc--hh-c---ccccceeeeccc----ccccCCCCcEEEEecCC
Q 005235 419 ---AIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNE--EE-Q---RRVKDLLHVETP----TAPDDNMASIVSWLQHD 484 (707)
Q Consensus 419 ---~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~--~~-~---~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~ 484 (707)
.|.+++|+|+ + ..+++++.++.|++|++.++.. .+ . .+...+..+.|. +++++.++.+++|+...
T Consensus 205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence 8999999999 7 4788888999999999988764 22 3 566777777763 78888999999999986
Q ss_pred ccceE-Eecc----CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--------
Q 005235 485 KLDGI-RLRH----FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT-------- 550 (707)
Q Consensus 485 ~~~~~-~~~h----~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd-------- 550 (707)
..... +..+ ...+.++.|+ ++.++++++.++ .|++|++.++... ..+ .|.+.|.+++| |+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g---~i~~~d~~~~~~~-~~~~~~~~~v~~~~~-~~l~~~~~dg 357 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG---TLNFYELGHDEVL-KTISGHNKGITALTV-NPLISGSYDG 357 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS---CEEEEETTEEEEE-EEECCCSSCEEEEET-TTTEEEETTS
T ss_pred CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC---CEEEEECCCCcEE-EEEeCCCCCEEEEEe-cCcEEECCCC
Confidence 65543 3333 4678888886 899999999988 9999998875544 444 44444433333 21
Q ss_pred --------------------------------------------------------------------------------
Q 005235 551 -------------------------------------------------------------------------------- 550 (707)
Q Consensus 551 -------------------------------------------------------------------------------- 550 (707)
T Consensus 358 ~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 437 (615)
T 1pgu_A 358 RIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 437 (615)
T ss_dssp CEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTC
T ss_pred eEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCC
Confidence
Q ss_pred ------------------CCEEEEEe--CCeEEEEECCCCeEE-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 551 ------------------RSIFFVST--KKNIRVYDLLKQRLI-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 551 ------------------~~~l~v~s--dg~I~iwDl~~~~~~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
+.+|++++ ++.|++||+.+++.. ..+..|...|++++|+|+|.+|++|+.||.|++||+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 438 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC
Confidence 33344443 566666666655444 455678889999999999999999999999999999
Q ss_pred CCCCcceEEeec-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235 610 DLSSKPYRVLKC-HPKDITNVAFHR----------SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678 (707)
Q Consensus 610 ~~~~~~~~~l~~-h~~~I~~vafsp----------dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~ 678 (707)
.++ .++..+.+ |...|++++|+| ++++||+|+.||+|+||++. +.. .++..+.+|...
T Consensus 518 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~~--~~~~~~~~h~~~-- 586 (615)
T 1pgu_A 518 QSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK------RPM--KIIKALNAHKDG-- 586 (615)
T ss_dssp TTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS------CTT--CCEEETTSSTTC--
T ss_pred CCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC------CCc--eechhhhcCccc--
Confidence 877 77778887 999999999999 99999999999999999653 331 247789999887
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 679 RGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 679 ~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+++|+|+++ |++++.||+|++|++
T Consensus 587 --v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 587 --VNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp --EEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred --eEEEEEcCCCC-eEEecCCceEEEEee
Confidence 99999999999 999999999999985
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-34 Score=301.63 Aligned_cols=245 Identities=15% Similarity=0.216 Sum_probs=213.8
Q ss_pred EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235 411 LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 411 l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
.+++.. .+.|.+|+|+|++ ..|++++.|+.|++||+.++.. ...
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~----------------------------------~~~ 50 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVE----------------------------------VRS 50 (304)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE----------------------------------EEE
T ss_pred EEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCce----------------------------------eEE
Confidence 345555 7899999999999 4788899999999999876421 123
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
+..|...|.+++|++++++|++++.|+ .|++||+.++... ..+ .|.+.|.+++|+|++++|++|+ |++|++||+
T Consensus 51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~---~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 51 IQVTETPVRAGKFIARKNWIIVGSDDF---RIRVFNYNTGEKV-VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred eeccCCcEEEEEEeCCCCEEEEECCCC---EEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence 457889999999999999999999998 9999999999887 778 8999999999999999999998 999999999
Q ss_pred CCC-eEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC--CCCEEEEEeC
Q 005235 568 LKQ-RLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR--SYPLFASCSD 643 (707)
Q Consensus 568 ~~~-~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp--dg~llaSgs~ 643 (707)
.++ .+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+...........+|...|..++|+| ++++|++|+.
T Consensus 127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 887 66678889999999999999 6789999999999999999877444444556778899999987 7789999999
Q ss_pred CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
||+|+|||+ .+.. ++..+.+|... |.+++|+|++++|+||+.||+|+|||+
T Consensus 207 D~~i~iWd~------~~~~---~~~~~~~h~~~----v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 207 DLTIKIWDY------QTKS---CVATLEGHMSN----VSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp TSEEEEEET------TTTE---EEEEEECCSSC----EEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCeEEEEeC------CCCc---cceeeCCCCCC----EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 999999954 3333 47889999987 999999999999999999999999985
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.8e-34 Score=307.56 Aligned_cols=277 Identities=13% Similarity=0.148 Sum_probs=231.4
Q ss_pred CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235 288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR 360 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~ 360 (707)
...|.||.. .|+|++.+|++.+. |..+ |.......+..++.+...+ ..+.++|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~~v-------~~~~~s~~~- 109 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQ----------DGKLIIWDSYTTNKVHAIPLRSSWV-------MTCAYAPSG- 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSSSCE-------EEEEECTTS-
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCcceEeecCCccE-------EEEEECCCC-
Confidence 346788976 59999999999554 3333 3333444555555544433 566676554
Q ss_pred cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec-CCcEEEEEEccCCCccEEE
Q 005235 361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI-GEAIQYVAWNPLPELPVLA 435 (707)
Q Consensus 361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~-~~~V~~v~~spdg~~~lla 435 (707)
.++++|+.|++|+||++.++ +....+.. .+.|.++.|++++ .+++
T Consensus 110 ----------------------------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s 159 (340)
T 1got_B 110 ----------------------------NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVT 159 (340)
T ss_dssp ----------------------------SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEE
T ss_pred ----------------------------CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEE
Confidence 58999999999999999875 34555555 7899999999998 6999
Q ss_pred EEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235 436 VSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA 515 (707)
Q Consensus 436 ~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d 515 (707)
++.|+.|++||+.++.. ...+.+|.+.|.+++|+|++.+|++++.|
T Consensus 160 ~s~d~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 160 SSGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp EETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCCcEEEEECCCCcE----------------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 99999999999876521 11355799999999999999999999999
Q ss_pred CCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCC
Q 005235 516 GESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPA 591 (707)
Q Consensus 516 g~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spd 591 (707)
+ .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+++++.+..+..+ ...|++++|+|+
T Consensus 206 ~---~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 206 A---SAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp S---CEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred C---cEEEEECCCCeeE-EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 8 9999999999887 788 8999999999999999999998 999999999999888777532 246999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
|.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++.+||||+.||+|+||+
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999877 67889999999999999999999999999999999994
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=330.14 Aligned_cols=309 Identities=13% Similarity=0.122 Sum_probs=253.2
Q ss_pred cEEEEE----------eCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC---C-
Q 005235 389 YLEYKG----------STDGTVRIWEVESGR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG---N- 451 (707)
Q Consensus 389 ~~l~sg----------s~DgtVrIWd~~tg~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~---~- 451 (707)
.++++| +.||+|+||++.++. ++..+.+...|.+++|+|++ ..|++++.++.|++|++... .
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~ 104 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAIN 104 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCC
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCC-CeEEEEccCCeEEEeeccccccccc
Confidence 489998 899999999999875 55556668899999999999 47888889999999999872 1
Q ss_pred --chhcccccceeeeccc------ccccCCCCcEEEEecCCcc------ceE----EeccCCCeEEEEEcCC-CCEEEEE
Q 005235 452 --EEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKL------DGI----RLRHFKMVSSVEWHRR-GDYLSTV 512 (707)
Q Consensus 452 --~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~------~~~----~~~h~~~V~~v~~sp~-g~~lat~ 512 (707)
..+..+...+.++.|. +++++.++.|++|++.... ... ...|...|.+++|+|+ +.+|+++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 2445577777777764 7888999999999998665 222 3578999999999999 7899999
Q ss_pred eCCCCccEEEEEECCCCceeeeee-cc------CCCeEEEEEeCCC-CEEEEEe-CC---eEEEEECCCC-eEEEEEe-C
Q 005235 513 MPAGESRAIFMHQLSKKLSHRIPF-KL------HGLPVSSVFHPTR-SIFFVST-KK---NIRVYDLLKQ-RLIKKLE-T 578 (707)
Q Consensus 513 s~dg~~~~V~Iwdl~~~~~~~~~~-~~------~~~V~~v~fspd~-~~l~v~s-dg---~I~iwDl~~~-~~~~~l~-~ 578 (707)
+.|+ .|++||+.++... ..+ .+ ...|.+++|+|++ .+|++++ ++ .|++||++++ .++..+. +
T Consensus 185 ~~dg---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 185 GSSN---FASIWDLKAKKEV-IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp SSSS---CEEEEETTTTEEE-EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred cCCC---CEEEEECCCCCcc-eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 9988 9999999998876 666 43 7889999999997 5788877 67 9999999986 6777777 8
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeccccc
Q 005235 579 GLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYS 656 (707)
Q Consensus 579 ~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~ 656 (707)
|...|.+++|+| ++.+|++|+.||.|++||+.++ +++..+.+|...|++++|+|++ .+|++++.||.|+||++....
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 999999999999 9999999999999999999987 7889999999999999999999 799999999999999876432
Q ss_pred CCCCCCc------ccc--------------------eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 657 DLNQNPL------IVP--------------------LEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 657 Dl~~~~~------~~p--------------------l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
....... ..+ +.....|... |.+++|+|+|++|++++.||+|+||++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 340 NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP----SPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CSSCC----------------------CCSCCCSSCCCCCSTTCCC----SCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CCcccccccccccCCcccccccccccccccccccccccCCccccCC----ccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 2111000 000 0011113433 889999999999999999999999985
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-35 Score=364.15 Aligned_cols=357 Identities=16% Similarity=0.210 Sum_probs=283.1
Q ss_pred CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235 288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR 360 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~ 360 (707)
.+.+++|.. +|+|+|.+|++.+. |..+ |.......+..+.++...| ..+.|+|++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~vw~~~~~~~~~~~~~h~~~v-------~~~~~s~~~- 669 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGA----------DKTLQVFKAETGEKLLDIKAHEDEV-------LCCAFSSDD- 669 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSSCE-------EEEEECTTS-
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeC----------CCeEEEEECCCCCEEEEeccCCCCE-------EEEEEecCC-
Confidence 345678877 69999999999655 4444 4445555666665555444 677777654
Q ss_pred cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCc-cEEEEEe
Q 005235 361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPEL-PVLAVSV 438 (707)
Q Consensus 361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~-~lla~s~ 438 (707)
.++++|+.||+|+|||+.+++++..+.. ...|.+++|+|+++. .+++++.
T Consensus 670 ----------------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 670 ----------------------------SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp ----------------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred ----------------------------CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence 4899999999999999999999999987 889999999996432 4667778
Q ss_pred CCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccce-----------------------
Q 005235 439 GQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDG----------------------- 488 (707)
Q Consensus 439 d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~----------------------- 488 (707)
|+.|++||+.++.. .+.++...+.++.|+ +++++.++.+++|+.......
T Consensus 722 d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp TSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred CCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 99999999998864 445677888888776 788899999999997543210
Q ss_pred ---------------------------------EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 489 ---------------------------------IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 489 ---------------------------------~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
...+|...|.+++|+|++.++++++.++ .|.+|++.++... ..
T Consensus 802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~~-~~ 877 (1249)
T 3sfz_A 802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLKV-AD 877 (1249)
T ss_dssp CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEEE-EE
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCcee-ee
Confidence 0126788999999999999999999988 9999999998877 67
Q ss_pred e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC---------------------------------------------
Q 005235 536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL--------------------------------------------- 568 (707)
Q Consensus 536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~--------------------------------------------- 568 (707)
+ .|.+.|.+++|+|++.+|++++ |+.|++||+.
T Consensus 878 ~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 7 8888899999999988888877 7888888743
Q ss_pred ----------------------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-
Q 005235 569 ----------------------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS- 613 (707)
Q Consensus 569 ----------------------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~- 613 (707)
+++.+..+.+|...|++++|+|+|.+|++|+.||.|++||+.++.
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 233444556788889999999999999999999988888876431
Q ss_pred --------------------------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 614 --------------------------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 614 --------------------------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
++...+.+|...|++++|+|++++|++++.||+|++|++
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~--- 1114 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--- 1114 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECS---
T ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEEC---
Confidence 234456667778888888888888888888888888843
Q ss_pred cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+.. ++..+.+|... |++++|+|++.+|++++.||+|++|++
T Consensus 1115 ---~~~~---~~~~l~~h~~~----v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1115 ---DLLS---PLHELKGHNGC----VRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp ---SSSS---CSBCCCCCSSC----EEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred ---CCcc---eeeeeccCCCc----EEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 3333 36678899887 999999999999999999999999985
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=311.98 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=189.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLE-----IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~-----~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+++|+.||+|+|||+.+++++..+. +.+.|++|+|+|++ ..|++++.|++|++||+.++..
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~------------ 161 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV------------ 161 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence 68899999999999999987655443 37899999999999 4788889999999999876521
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHG 540 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~ 540 (707)
...+.+|...|.+++|++++. +|++++.|+ .|+|||+.+++.. ..+ .+..
T Consensus 162 ----------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~-~~~~~~~~~~ 215 (344)
T 4gqb_B 162 ----------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDN---RILLWDTRCPKPA-SQIGCSAPGY 215 (344)
T ss_dssp ----------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTS---CEEEEETTSSSCE-EECC----CC
T ss_pred ----------------------EEEEcCcCCceEEEEecCCCCCceeeecccc---cccccccccccee-eeeecceeec
Confidence 123568999999999999885 789999988 9999999998876 555 4556
Q ss_pred CeEEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235 541 LPVSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 541 ~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
.+.+++|+|+ +.+|++|+ |++|+|||+++++++.++.+|...|++++|+|+| .+|++|+.|++|+|||+.++ + +.
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~ 293 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-E-LF 293 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-E-EE
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-c-EE
Confidence 7899999995 56777887 8999999999999999999999999999999998 57999999999999999876 4 44
Q ss_pred EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235 618 VLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHG 652 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~ 652 (707)
.+.+|...|++|+|||++. +|+|||.||+|++|++
T Consensus 294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 6789999999999999986 7889999999999955
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=298.37 Aligned_cols=265 Identities=14% Similarity=0.201 Sum_probs=230.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||.|+|||+.+++++..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++...
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~-------------- 109 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCV-------------- 109 (369)
T ss_dssp CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEE--------------
T ss_pred CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE--------------
Confidence 4899999999999999999999999986 8899999999998 47888889999999998765221
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC-----CCccEEEEEECCCCcee----------
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA-----GESRAIFMHQLSKKLSH---------- 532 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d-----g~~~~V~Iwdl~~~~~~---------- 532 (707)
....+...|.+++|+|++.+|++++.+ + .|.+|++......
T Consensus 110 ---------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 110 ---------------------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG---SINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp ---------------------EEEECSSCEEEEEECTTSSEEEEEECCBTTBCC---EEEEEEEEECTTTCCEEEECSSC
T ss_pred ---------------------EEeecCCCeEEEEEccCCCEEEEecCCccCCCC---EEEEEEecCCccceeecccccce
Confidence 122478899999999999999999987 6 9999999766431
Q ss_pred eeee-ccCC--CeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235 533 RIPF-KLHG--LPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607 (707)
Q Consensus 533 ~~~~-~~~~--~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw 607 (707)
...+ .+.+ .+.+++|+|++.+|++++ ++.|++||+.+ ++.+..+..|...|.+++|+|++.+|++++.||.|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence 0222 3444 899999999999999998 89999999998 78899999999999999999999999999999999999
Q ss_pred ECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEecccccCCCCCCcccceEEeeCC
Q 005235 608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC--------------TAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 608 Dl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg--------------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
|+.++ .++..+. +...+.+++|+|+++++++++.++ .|++|+. .+.. ++..+.+|
T Consensus 246 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~------~~~~---~~~~~~~~ 314 (369)
T 3zwl_B 246 DVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK------IFEE---EIGRVQGH 314 (369)
T ss_dssp ETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET------TTCC---EEEEEECC
T ss_pred ECCCC-ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec------CCCc---chhheecc
Confidence 99987 6677776 778899999999999999999988 7999953 3333 47788999
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
... |.+++|+|++++|++++.||.|++|++
T Consensus 315 ~~~----v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 315 FGP----LNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp SSC----EEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred cCc----EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 887 999999999999999999999999985
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-33 Score=297.08 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=219.8
Q ss_pred cEEEEEeCCCcEEEEeCCCC-----eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVESG-----RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg-----~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.+|+|||.||+|+|||+.++ .+...+.+ ...|.+++|+|++ ..|++++.|+.|++|+......
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~---------- 120 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTT---------- 120 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----------
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccce----------
Confidence 58999999999999998764 35566665 7899999999999 4788899999999999765421
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
......+...+..+.+++++.+|++++.|+ .+++|++.........+ .+...
T Consensus 121 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 121 ------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDK---TIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSSCSSC
T ss_pred ------------------------eeeecCCCCceeEEEEeecCccceeecCCC---eEEEEEeCCCceEEEEeccccCc
Confidence 112446778889999999999999999988 99999998776552334 78899
Q ss_pred eEEEEEeCCC--CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235 542 PVSSVFHPTR--SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 542 V~~v~fspd~--~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~ 618 (707)
+.+++|++++ .++++++ |+.|++||+.+++++..+.+|...|++++|+|+|.+|++|+.||.|++||+.+. .++..
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~ 252 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYT 252 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeee
Confidence 9999999865 4566776 899999999999999999999999999999999999999999999999999977 67777
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
+..+ ..|.+++|+|++.++ +++.|+.|+||++....-+.............+|... |++++|+|++++|+||+.
T Consensus 253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ----CTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC----EEEEEECTTSSEEEEEET
T ss_pred ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC----EEEEEECCCCCEEEEEeC
Confidence 7754 679999999988765 4557999999965422111000111112334567766 999999999999999999
Q ss_pred CCcEEEEeC
Q 005235 699 DSVIRLYCH 707 (707)
Q Consensus 699 Dg~IrlWdl 707 (707)
||+|+||++
T Consensus 327 Dg~v~iW~~ 335 (340)
T 4aow_A 327 DNLVRVWQV 335 (340)
T ss_dssp TSCEEEEEE
T ss_pred CCEEEEEeC
Confidence 999999985
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-34 Score=317.64 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=254.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccce
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDL 461 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v 461 (707)
|..++.++++|+.||+|++||+.+++....+.....+....|+|++. .|++++.++.|++|++.++.. .+..+...+
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 142 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQAHVSEI 142 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETTSSSSCE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecccccCcc
Confidence 55566789999999999999999877655555565566668899994 788888999999999987754 334688888
Q ss_pred eeeccc-----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 462 LHVETP-----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 462 ~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
.++.|. +++++.++.|++|++..... ..+.+|...|.+++|+|++.+|++++.|+ .|++||+.++... ..
T Consensus 143 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~-~~ 218 (420)
T 3vl1_A 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG---TIRLWECGTGTTI-HT 218 (420)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS---CEEEEETTTTEEE-EE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEeECCCCcee-EE
Confidence 888886 88899999999999986554 44778999999999999999999999998 9999999988776 55
Q ss_pred e-c---cCCCeE---------------------EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEE
Q 005235 536 F-K---LHGLPV---------------------SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAI 588 (707)
Q Consensus 536 ~-~---~~~~V~---------------------~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~ 588 (707)
+ . +...+. +++|+|++.+|++++ |+.|++||+.+++.+..+.. |...|.+++|
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence 5 2 334444 455578899999998 89999999999887777754 6788999999
Q ss_pred cCCCC-EEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc
Q 005235 589 HPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP 666 (707)
Q Consensus 589 spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p 666 (707)
+|++. +|++|+.||.|++||+.++..++..+.. |...|+++.| +++.+|++++.||+|+||++..............
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 377 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence 99998 9999999999999999987676788877 6778888855 5788999999999999997653211111000112
Q ss_pred eEEeeCCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEeC
Q 005235 667 LEILRGHTSSNGRGVMDCKFHPRQP---WLFTAGADSVIRLYCH 707 (707)
Q Consensus 667 l~~l~gh~~~~~~gV~~l~fspdg~---~L~s~g~Dg~IrlWdl 707 (707)
...+.+|... |.+++|+|++. .|+++|.+|.+.+|++
T Consensus 378 ~~~~~~~~~~----v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 378 PTFLVSNDDA----VSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CEEECCSSCC----CCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred ccEEccCCcc----eEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 3346677776 99999999999 8989999999999985
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-33 Score=305.81 Aligned_cols=269 Identities=14% Similarity=0.174 Sum_probs=226.7
Q ss_pred EEEEEeCCCcEEEEeCCCCe------EEEEEec-CCcEEEEEEccC----C---CccEEEEEeCCeEEEEECCCCCchhc
Q 005235 390 LEYKGSTDGTVRIWEVESGR------CLRVLEI-GEAIQYVAWNPL----P---ELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~------~l~~l~~-~~~V~~v~~spd----g---~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
++++|+.||+|+||++.+++ ++..+.. ...|.+++|+|+ + . .|++++.++.|++|++.++....
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~- 105 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETK- 105 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTC-
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcccc-
Confidence 89999999999999999988 5666665 889999999998 5 4 78888999999999976542200
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccceEEecc-----CCCeEEEEEc----CCCCE-EEEEeCCCCccEEEEEE
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-----FKMVSSVEWH----RRGDY-LSTVMPAGESRAIFMHQ 525 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-----~~~V~~v~~s----p~g~~-lat~s~dg~~~~V~Iwd 525 (707)
.. ....+..| ...|.+++|+ |++.+ |++++.++ .|++||
T Consensus 106 --------------------~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd 154 (397)
T 1sq9_A 106 --------------------KV--------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---TTYIWK 154 (397)
T ss_dssp --------------------CE--------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS---CEEEEE
T ss_pred --------------------cc--------cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC---cEEEEe
Confidence 00 01124456 5899999999 99999 99999988 999999
Q ss_pred CCC------Cceeee-----ee-c-------cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC---C---
Q 005235 526 LSK------KLSHRI-----PF-K-------LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---G--- 579 (707)
Q Consensus 526 l~~------~~~~~~-----~~-~-------~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~--- 579 (707)
+.. .... . .+ . +...|.+++|+|++ +|++++ ++.|++||+.+++.+..+.. |
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 155 FHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp EESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred CCcccccccccee-eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 988 5444 3 44 2 68889999999999 888888 89999999999999999998 8
Q ss_pred CCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeec-------------CCCCEEEEEEcCCCCEEEEEeC
Q 005235 580 LKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKC-------------HPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 580 ~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~-------------h~~~I~~vafspdg~llaSgs~ 643 (707)
...|.+++|+|++.+|++|+.| |.|++||+.++ +++..+.+ |...|.+++|+|++.+|++++.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 8999999999999999999999 99999999977 77888988 9999999999999999999999
Q ss_pred CCcEEEEecccccCCCCCCcccceEEee------CC---------------CCCCCCCeeEEEEcCCC----------CE
Q 005235 644 DCTAYVFHGMVYSDLNQNPLIVPLEILR------GH---------------TSSNGRGVMDCKFHPRQ----------PW 692 (707)
Q Consensus 644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~------gh---------------~~~~~~gV~~l~fspdg----------~~ 692 (707)
||.|+||++. +.. ++..+. +| ... |.+++|+|++ .+
T Consensus 312 dg~i~iwd~~------~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 312 DGKLRFWDVK------TKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG----VFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp TSEEEEEETT------TTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC----EEEEEEECTTTSBSTTCTTSCE
T ss_pred CCeEEEEEcC------CCc---eeEEEecccCcccchhhhhccccccccccCCc----eeEEEeccccccccccccccce
Confidence 9999999543 333 367777 66 666 9999999998 79
Q ss_pred EEEEeCCCcEEEEeC
Q 005235 693 LFTAGADSVIRLYCH 707 (707)
Q Consensus 693 L~s~g~Dg~IrlWdl 707 (707)
|++++.||.|++|++
T Consensus 379 l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 379 LCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEETTTEEEEEEE
T ss_pred EEEecCCCcEEEEEc
Confidence 999999999999985
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.3e-33 Score=317.96 Aligned_cols=349 Identities=14% Similarity=0.132 Sum_probs=260.8
Q ss_pred cccCCCCCccCChh--hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcC--ccccceeecCCCCC
Q 005235 296 ESYNPSLEYIPTQE--ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCP--RVRKKRVNIDPETL 371 (707)
Q Consensus 296 ~synP~ge~L~s~~--~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~p--r~~k~~lnidp~~l 371 (707)
-+|+|+|++|++.. .+..|+..... .....++.+.++... .+..+.|+| +.
T Consensus 24 ~~~spdg~~l~~~~~~~v~v~~~~~~~-------~~~~~~~~~~~h~~~------~v~~~~~sp~~~~------------ 78 (615)
T 1pgu_A 24 LSYDPTTNAIAYPCGKSAFVRCLDDGD-------SKVPPVVQFTGHGSS------VVTTVKFSPIKGS------------ 78 (615)
T ss_dssp CEEETTTTEEEEEETTEEEEEECCSSC-------CSSCSEEEECTTTTS------CEEEEEECSSTTC------------
T ss_pred EEECCCCCEEEEecCCeEEEEECCCCC-------CccccceEEecCCCc------eEEEEEECcCCCC------------
Confidence 37999999998843 34455422110 000334444444433 036777776 54
Q ss_pred CCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEEec-CCcEEEEEEccCCCccEEEEEeC---
Q 005235 372 KPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--------RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG--- 439 (707)
Q Consensus 372 lp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--------~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d--- 439 (707)
.++++|+.||+|+||++.++ +++..+.. ...|.+++|+|++. .+++++.+
T Consensus 79 -----------------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~ 140 (615)
T 1pgu_A 79 -----------------QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDN 140 (615)
T ss_dssp -----------------CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSC
T ss_pred -----------------CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCC
Confidence 48999999999999999865 66667765 88999999999993 66666666
Q ss_pred -CeEEEEECCCCCchhcccccceeeeccc------ccccCCCCcEEEEecCCccceE-EeccCC---CeEEEEEcCC-CC
Q 005235 440 -QDVLILNTGLGNEEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRHFK---MVSSVEWHRR-GD 507 (707)
Q Consensus 440 -~~V~lwd~~~~~~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~---~V~~v~~sp~-g~ 507 (707)
+.|.+|+.......+..+...+.++.|. +++++.++.+++|+........ +..|.. .|.+++|+|+ |+
T Consensus 141 ~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 141 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred ccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC
Confidence 5888888544334556677778777775 7788899999999988765543 667888 9999999999 99
Q ss_pred EEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--
Q 005235 508 YLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG-- 579 (707)
Q Consensus 508 ~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-- 579 (707)
+|++++.++ .|++||+.++... ..+ .|.+.|.+++|+ ++.+|++++ |+.|++||+.+++.+..+..+
T Consensus 221 ~l~~~~~dg---~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 221 FVITVGSDR---KISCFDGKSGEFL-KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp EEEEEETTC---CEEEEETTTCCEE-EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred EEEEEeCCC---eEEEEECCCCCEe-EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 999999988 9999999998887 666 688999999999 999999998 899999999887666555433
Q ss_pred -------------------------------------------CCCeE--------------------------------
Q 005235 580 -------------------------------------------LKEVS-------------------------------- 584 (707)
Q Consensus 580 -------------------------------------------~~~I~-------------------------------- 584 (707)
...|.
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCce
Confidence 22222
Q ss_pred -EEEEcCC------------------------------------------------------------------------
Q 005235 585 -SIAIHPA------------------------------------------------------------------------ 591 (707)
Q Consensus 585 -sl~~spd------------------------------------------------------------------------ 591 (707)
+++| ++
T Consensus 376 ~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 376 VSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred EEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 2222 11
Q ss_pred -CCEEEEEEC-CCcEEEEECCCCCcce-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE
Q 005235 592 -GDNLIVGSR-EGKLCWFDMDLSSKPY-RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE 668 (707)
Q Consensus 592 -g~~L~sGs~-Dg~I~vwDl~~~~~~~-~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~ 668 (707)
+.+|++|+. |+.|++||+..+ ... ..+..|...|++++|+|++++|++++.||.|+||++ .+.. ++.
T Consensus 455 ~~~~l~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~------~~~~---~~~ 524 (615)
T 1pgu_A 455 SQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL------QSRE---VKT 524 (615)
T ss_dssp CSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET------TTTE---EEE
T ss_pred cCCEEEEeecCCCeEEEEECCCc-cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC------CCCc---cee
Confidence 333444444 455555555432 222 556778999999999999999999999999999954 3333 356
Q ss_pred EeeC-CCCCCCCCeeEEEEcC----------CCCEEEEEeCCCcEEEEeC
Q 005235 669 ILRG-HTSSNGRGVMDCKFHP----------RQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 669 ~l~g-h~~~~~~gV~~l~fsp----------dg~~L~s~g~Dg~IrlWdl 707 (707)
.+.+ |... |++++|+| ++.+|++++.||+|++|++
T Consensus 525 ~~~~~h~~~----v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 525 SRWAFRTSK----INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp CCSCCCSSC----EEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred EeecCCCCc----eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 6777 8877 99999999 9999999999999999985
No 36
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-34 Score=308.39 Aligned_cols=223 Identities=16% Similarity=0.154 Sum_probs=183.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVL-----EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l-----~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+++++.||+|+|||+.+++++... .+.+.|.+|+|+|++ ..|++++.|+.|++||+.++..
T Consensus 107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------------ 173 (357)
T 4g56_B 107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------------ 173 (357)
T ss_dssp EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence 4667889999999999998765432 237899999999999 4788889999999999876521
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHG 540 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~ 540 (707)
...+.+|...|.+++|++++. +|++++.|+ .|+|||+.++... ..+ .+..
T Consensus 174 ----------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~-~~~~~~~~~~ 227 (357)
T 4g56_B 174 ----------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA-TRIDFCASDT 227 (357)
T ss_dssp ----------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB-CBCCCTTCCS
T ss_pred ----------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee-eeeeeccccc
Confidence 113557999999999999885 789999988 9999999988765 333 5677
Q ss_pred CeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235 541 LPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 541 ~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
.+.+++|+|++ .+|++|+ |+.|++||+.+++++.++.+|...|++++|+|++ .+|++|+.|++|+|||++++ +++.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~ 306 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFR 306 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEE
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeE
Confidence 89999999985 5777777 8999999999999999999999999999999987 57899999999999999876 6565
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecc
Q 005235 618 VLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 618 ~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~ 653 (707)
. .+|...|++|+||| ++.+|||||.||+|++|++.
T Consensus 307 ~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 D-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred E-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 4 47999999999999 78999999999999999653
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.7e-33 Score=299.20 Aligned_cols=278 Identities=14% Similarity=0.138 Sum_probs=228.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
+.++++|+.||.|+||++.+++ ++..+.. ...|.+++|+|++ ..+++++.++.|++|++.++...
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----------- 87 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK----------- 87 (372)
T ss_dssp SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE-----------
T ss_pred CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeee-----------
Confidence 4589999999999999999997 7788875 8899999999998 47888888999999997554210
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee--ccCC
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF--KLHG 540 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~--~~~~ 540 (707)
.......|...|.+++|+|++.+|++++.++ .|++|++...... ...+ .|..
T Consensus 88 ---------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 88 ---------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp ---------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCS
T ss_pred ---------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCC
Confidence 0012346889999999999999999999988 9999999887631 0233 6789
Q ss_pred CeEEEEEeCCCCEEEEEe-CCeEEEEEC------------------CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 005235 541 LPVSSVFHPTRSIFFVST-KKNIRVYDL------------------LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl------------------~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D 601 (707)
.|.+++|+|++.+|++++ |+.|++||+ ..++++..+..|...|.+++|+|+|.+|++|+.|
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 999999999999999998 899999995 4678888998999999999999999999999999
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc--cc--CCCC-----------------
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV--YS--DLNQ----------------- 660 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~--~~--Dl~~----------------- 660 (707)
|.|++||+.++ +++..+..|...|.+++|+|++.+|++| .|+.|++|++.. .. -+..
T Consensus 224 ~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1k8k_C 224 STVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 301 (372)
T ss_dssp TEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred CEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence 99999999977 7888999999999999999999988888 899999998754 10 0000
Q ss_pred ----CCcccce------EEe-eCCCCCCCCCeeEEEEc-CCC---CEEEEEeCCCcEEEEeC
Q 005235 661 ----NPLIVPL------EIL-RGHTSSNGRGVMDCKFH-PRQ---PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 661 ----~~~~~pl------~~l-~gh~~~~~~gV~~l~fs-pdg---~~L~s~g~Dg~IrlWdl 707 (707)
....... ..+ .+|... |++++|+ ++| .+|+||+.||+|++|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 302 FQNLDKKASSEGSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp HHHCCCCC---------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hhhcccccccccCccccccccccccCC----cceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 0000000 223 488887 9999977 666 89999999999999984
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=298.31 Aligned_cols=277 Identities=14% Similarity=0.163 Sum_probs=222.2
Q ss_pred cEEEEEeC---CCcEEEEeCCCCeEEEEE--ecCCcEEEEEEccCC--CccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 389 YLEYKGST---DGTVRIWEVESGRCLRVL--EIGEAIQYVAWNPLP--ELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 389 ~~l~sgs~---DgtVrIWd~~tg~~l~~l--~~~~~V~~v~~spdg--~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
.++++|+. ||+|+||++.++++.... .+...|.+++|+|++ ...+++++.++.|++|++.++..
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------- 102 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------- 102 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---------
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---------
Confidence 36778876 999999999998875443 458899999999982 24788899999999999876531
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE------cCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW------HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~------sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~ 535 (707)
....+.+|...|.+++| ++++++|++++.|+ .|++||+.........
T Consensus 103 ------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 103 ------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG---TVKVWDPRQKDDPVAN 155 (357)
T ss_dssp ------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS---CEEEECTTSCSSCSEE
T ss_pred ------------------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCC---eEEEEeCCCCCCccee
Confidence 11235579999999954 68999999999998 9999999987632155
Q ss_pred e-ccCC----CeEEEE----EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC---CCCEEEEEECCC
Q 005235 536 F-KLHG----LPVSSV----FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP---AGDNLIVGSREG 602 (707)
Q Consensus 536 ~-~~~~----~V~~v~----fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp---dg~~L~sGs~Dg 602 (707)
+ .+.+ .+.+++ |+|++.+|++++ ++.|++||+.+++.... ..+...|.+++|+| ++.+|++|+.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 5 3333 788988 688999999998 89999999999987544 56778999999999 999999999999
Q ss_pred cEEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCC----------CCcccc
Q 005235 603 KLCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQ----------NPLIVP 666 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~----------~~~~~p 666 (707)
.|++||+.++ .+...+ .+|...|++++|+|+++ +|++|+.||.|+||++........ .....+
T Consensus 235 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (357)
T 3i2n_A 235 KFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL 313 (357)
T ss_dssp EEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred eEEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence 9999999865 443333 48999999999999999 899999999999998753321100 001135
Q ss_pred eEEeeCCCCCCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 005235 667 LEILRGHTSSNGRGVMDCKFHPRQPWLF-TAGADSVIRLYCH 707 (707)
Q Consensus 667 l~~l~gh~~~~~~gV~~l~fspdg~~L~-s~g~Dg~IrlWdl 707 (707)
+..+.+|... |.+++|+|++++|+ +++.||.|+||++
T Consensus 314 ~~~~~~~~~~----v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 314 LQNVTLSTQP----ISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEECCSSC----EEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred eeccccCCCC----eeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 7888999887 99999999999998 8999999999985
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.9e-33 Score=324.45 Aligned_cols=269 Identities=16% Similarity=0.185 Sum_probs=219.8
Q ss_pred CcEEEEEeCCCcEEEEeCCC-----CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 388 CYLEYKGSTDGTVRIWEVES-----GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~t-----g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
..+|+|||.||+|+||++.+ +.+.+.+.+ ...|.+++|+|++ ..|++++.|++|+|||+.++..
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~--------- 464 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVS--------- 464 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE---------
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc---------
Confidence 35899999999999999875 445566665 7899999999999 4788888999999999876421
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----c
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----K 537 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~ 537 (707)
...+.+|...|.+++|+|++.+|++++.|+ +|+|||+...... ... .
T Consensus 465 -------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---~i~iwd~~~~~~~-~~~~~~~~ 515 (694)
T 3dm0_A 465 -------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDR---TIKLWNTLGECKY-TISEGGEG 515 (694)
T ss_dssp -------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEE-EECSSTTS
T ss_pred -------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEECCCCcce-eeccCCCC
Confidence 123568999999999999999999999998 9999998765443 221 5
Q ss_pred cCCCeEEEEEeCCC--CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235 538 LHGLPVSSVFHPTR--SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614 (707)
Q Consensus 538 ~~~~V~~v~fspd~--~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~ 614 (707)
|...|.+++|+|++ ..|++++ |++|++||+.++++...+.+|...|++++|+|+|.+|++|+.||.|++||+.++ +
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~ 594 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-K 594 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-E
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Confidence 77889999999986 5788888 999999999999999999999999999999999999999999999999999987 6
Q ss_pred ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC---------------CCC
Q 005235 615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS---------------NGR 679 (707)
Q Consensus 615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~---------------~~~ 679 (707)
++..+.. ...|.+++|+|++.+|++++ |+.|+|||+. +... +..+..+... ...
T Consensus 595 ~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 595 KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLE------SKSI---VEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETT------TTEE---EEEECCCCC----------------CCC
T ss_pred eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECC------CCCC---hhhhccccccccccccccccccCCceeE
Confidence 6666654 46799999999999888776 4569999654 3322 2222221100 011
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.|++++|+|+|.+|+||+.||+|+||++
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 2789999999999999999999999986
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-33 Score=301.05 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=224.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCC---ccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPE---LPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~---~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
..+++++.++.|+||++.+++.+..+.. ...|.+++|+|++. ..|++++.++.|++|++.++..
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------- 107 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC------- 107 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------
Confidence 3566666677999999998887777663 47899999999942 3688888999999999766422
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-- 536 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-- 536 (707)
...+.+|...|.+++|+| ++.+|++++.|+ .|++||+.++... ..+
T Consensus 108 ---------------------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~-~~~~~ 156 (366)
T 3k26_A 108 ---------------------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDH---ALRLWNIQTDTLV-AIFGG 156 (366)
T ss_dssp ---------------------------EEEEESCCSCEEEEEECSSCTTEEEEEETTS---CEEEEETTTTEEE-EEECS
T ss_pred ---------------------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEEeecCeEE-EEecc
Confidence 113457999999999999 999999999998 9999999988776 554
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE----------------------------eCCCCCeEE
Q 005235 537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL----------------------------ETGLKEVSS 585 (707)
Q Consensus 537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l----------------------------~~~~~~I~s 585 (707)
.+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+ ..|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 6889999999999999999998 899999999876543322 338889999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCC-------------cceEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005235 586 IAIHPAGDNLIVGSREGKLCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVF 650 (707)
Q Consensus 586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspd--g~llaSgs~Dg~I~Vw 650 (707)
++|+ +++|++|+.||.|++||+.+.. ..+..+..|...|++++|+|+ +.+|++|+.||.|+||
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 9998 7899999999999999998653 237788899999999999999 9999999999999999
Q ss_pred ecccccCCCCCCcc-cceEEeeCC--CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 651 HGMVYSDLNQNPLI-VPLEILRGH--TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 651 d~~~~~Dl~~~~~~-~pl~~l~gh--~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++. ..... ..+..+.+| ... |.+++|+|++++|++++.||.|++||+
T Consensus 315 d~~------~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 315 DLE------VEDPHKAKCTTLTHHKCGAA----IRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECC------SSSGGGCEEEEECCTTCCSC----EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ECC------CCCCccccceEEcccccCCc----eEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 653 33322 245578887 455 999999999999999999999999996
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-32 Score=298.86 Aligned_cols=263 Identities=15% Similarity=0.166 Sum_probs=213.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLE---IGEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~---~~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.++++|+.||+|+|||+.+++....+. +.+.|.+++|+| ++ ..|++++.|+.|++|++....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~------------- 152 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSSIRGATTLRDFSGSV------------- 152 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEETTTEEEEEETTSCE-------------
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEeCCCEEEEEECCCCc-------------
Confidence 489999999999999999998887776 488999999999 55 578888899999999976421
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
+..+. ....|...|.+++|+|++.+|++++.|+ .|++||+. +... ..+ .|.+.|.
T Consensus 153 ------------~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~-~~~~-~~~~~h~~~v~ 208 (383)
T 3ei3_B 153 ------------IQVFA-------KTDSWDYWYCCVDVSVSRQMLATGDSTG---RLLLLGLD-GHEI-FKEKLHKAKVT 208 (383)
T ss_dssp ------------EEEEE-------CCCCSSCCEEEEEEETTTTEEEEEETTS---EEEEEETT-SCEE-EEEECSSSCEE
T ss_pred ------------eEEEe-------ccCCCCCCeEEEEECCCCCEEEEECCCC---CEEEEECC-CCEE-EEeccCCCcEE
Confidence 11110 0124568899999999999999999998 99999994 4444 666 8999999
Q ss_pred EEEEeCCCC-EEEEEe-CCeEEEEECCC----CeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcce
Q 005235 544 SSVFHPTRS-IFFVST-KKNIRVYDLLK----QRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 544 ~v~fspd~~-~l~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
+++|+|+++ +|++++ |+.|++||+.+ +.++..+ .|...|.+++|+| +|.+|++|+.|+.|++||+.++ ...
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~ 286 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKP 286 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSC
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccc
Confidence 999999999 888888 89999999997 6677777 6889999999999 9999999999999999999977 444
Q ss_pred EEeecCC-----------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCC
Q 005235 617 RVLKCHP-----------------KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSN 677 (707)
Q Consensus 617 ~~l~~h~-----------------~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~ 677 (707)
..+.+|. ..+..++|+|++.+ +|+.||+|+|||+ .++.. +..+.+| ...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~------~~~~~---~~~l~~~~~~~~- 354 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA------NSGGL---VHQLRDPNAAGI- 354 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET------TTCCE---EEEECBTTBCSC-
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec------CCCce---eeeecCCCCCce-
Confidence 5555443 23444566666655 6778999999954 44433 6778774 444
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 678 GRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 678 ~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+..++|+|++++|++|+ ||.|+||++
T Consensus 355 ---~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 355 ---ISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ---CCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ---EEEEEEecCccEEEEec-CCcEEEEec
Confidence 77789999999999997 999999986
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-33 Score=344.11 Aligned_cols=314 Identities=14% Similarity=0.163 Sum_probs=268.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKD 460 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~ 460 (707)
|+.++.++++|+.||+|+|||+.+++++..+.. .+.|.+++|+|++ ..+++++.|+.|++||+.++.. .+..+...
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 701 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 555667999999999999999999999999986 8899999999999 4788888999999999998864 34567777
Q ss_pred eeeeccc-------ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 461 LLHVETP-------TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 461 v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
+.++.|. +++++.++.+++|+..++... .+.+|.+.|.+++|+|+|.+|++++.|+ .|++||+.++...
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~v~vwd~~~~~~~ 778 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG---TLRLWDVRSANER 778 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS---EEEEEEGGGTEEE
T ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC---eEEEEeCCCCccc
Confidence 7777774 678899999999999876644 4678999999999999999999999998 9999999887655
Q ss_pred eeeec--------------cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEE
Q 005235 533 RIPFK--------------LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIV 597 (707)
Q Consensus 533 ~~~~~--------------~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~s 597 (707)
..+. ....+.+++|+|++..+++++++.|.+||+.++..+..+. +|...|.+++|+|++.++++
T Consensus 779 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 779 -KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp -EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred -ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence 3331 2337889999999999999999999999999998887776 78889999999999999999
Q ss_pred EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC-------------------
Q 005235 598 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL------------------- 658 (707)
Q Consensus 598 Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl------------------- 658 (707)
|+.||.|++||+.++ .....+.+|...|++++|+|++.+|++++.||+|++|+.......
T Consensus 858 ~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp ECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999999999999987 788899999999999999999999999999999999985421000
Q ss_pred ---------------------------------------------------CCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235 659 ---------------------------------------------------NQNPLIVPLEILRGHTSSNGRGVMDCKFH 687 (707)
Q Consensus 659 ---------------------------------------------------~~~~~~~pl~~l~gh~~~~~~gV~~l~fs 687 (707)
.......++..+.+|... |.+++|+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~----v~~l~~s 1012 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA----VRHIQFT 1012 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC----CCCEEEC
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc----eEEEEEC
Confidence 000011234566778777 9999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 005235 688 PRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 688 pdg~~L~s~g~Dg~IrlWdl 707 (707)
|++++|++++.||+|++|++
T Consensus 1013 ~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 1013 ADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp SSSSCEEEECSSSBEEEEET
T ss_pred CCCCEEEEEcCCCEEEEEEC
Confidence 99999999999999999985
No 43
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=308.42 Aligned_cols=316 Identities=10% Similarity=0.125 Sum_probs=242.1
Q ss_pred cccCCCCCccCChhhhhhhhccCcCCCCcccCcccceeccc-ccccccccccceeeeeEEEcC-ccccceeecCCCCCCC
Q 005235 296 ESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSV-PAYENAVKDSFERCMDLYLCP-RVRKKRVNIDPETLKP 373 (707)
Q Consensus 296 ~synP~ge~L~s~~~~~~W~~~~~~dr~~~lp~~~~~lr~v-~~~~~~i~e~f~rcldL~l~p-r~~k~~lnidp~~llp 373 (707)
..|+|++..+++.. .|. | ....+..+ .++ ...+..+.++| +.
T Consensus 33 ~~f~~~~~~~~~~~---~w~-----------~-~g~~~~~~~~~h-------~~~V~~~~~s~~~~-------------- 76 (437)
T 3gre_A 33 KEFGPIQEIVRSPN---MGN-----------L-RGKLIATLMENE-------PNSITSSAVSPGET-------------- 76 (437)
T ss_dssp GGGCCCCCCCCCCC---GGG-----------C-CCCEEEEECTTT-------TSCEEEEEEECSSS--------------
T ss_pred hhcCCccccccccc---ccc-----------c-cceEEeeeccCC-------CCceEEEEECCCCC--------------
Confidence 36999999998865 354 1 12334444 333 34447788886 43
Q ss_pred CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC---Ce---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES---GR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t---g~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
.++++|+.||+|+|||+.+ +. +...+.+.+.|.+|+|+|++ ..|++++.|+.|++|++
T Consensus 77 ---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 77 ---------------PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp ---------------CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEE
T ss_pred ---------------CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEe
Confidence 4899999999999999876 43 34555678999999999998 47888999999999997
Q ss_pred C---CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec--cCCCeEEEE--EcCCCCEEEEEeCCCCccE
Q 005235 448 G---LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFKMVSSVE--WHRRGDYLSTVMPAGESRA 520 (707)
Q Consensus 448 ~---~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~~V~~v~--~sp~g~~lat~s~dg~~~~ 520 (707)
. .+..........+ ... .+.. +...+.++. +++++.+|++++.|+ .
T Consensus 141 ~~~~~~~~~~~~~~~~i----------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~ 193 (437)
T 3gre_A 141 NHYQQESEVKFLNCECI----------------RKI--------NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS---R 193 (437)
T ss_dssp EEEEETTEEEEEEEEEE----------------EEE--------EGGGGSSCCCEEEEEEEECSSCEEEEEEETTS---E
T ss_pred ccccCCceeecccccee----------------EEE--------EccCcccccCceEEEEEEcCCCCEEEEEeCCC---e
Confidence 4 2211100000000 000 0111 567788888 668999999999998 9
Q ss_pred EEEEECCCCceeeeee-c--cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEc----CC
Q 005235 521 IFMHQLSKKLSHRIPF-K--LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIH----PA 591 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~-~--~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~s----pd 591 (707)
|++||+.++... ..+ . |.+.|.+++|+|++.+|++++ |+.|++||+++++++..+. .|...|.+++|+ |+
T Consensus 194 i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 194 VIIFDIRTLERL-QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp EEEEETTTCCEE-EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred EEEEeCCCCeee-EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 999999998887 777 4 789999999999999999998 8999999999999999886 677889999665 46
Q ss_pred CCEEEEEECCCcEEEEECCCCCcceEEeec--------------------------CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKC--------------------------HPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--------------------------h~~~I~~vafspdg~llaSgs~Dg 645 (707)
+.+|++|+.||.|++||+.++ .+...+.+ |...|++++|+ ++++|++|+.||
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS 350 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred ccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence 789999999999999999877 66666664 44568889999 778999999999
Q ss_pred cEEEEecccccCCCCCCcccceEEee-------------------------------------CCCCCCCCCeeEEEEcC
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILR-------------------------------------GHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~-------------------------------------gh~~~~~~gV~~l~fsp 688 (707)
.|++|++.... . +..+. .|... |++++|++
T Consensus 351 ~i~~wd~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----I~~i~~~~ 417 (437)
T 3gre_A 351 SIVMFSLNELS------S---SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI----INSISTCE 417 (437)
T ss_dssp EEEEEETTCGG------G---CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCC----EEEEEEEE
T ss_pred eEEEEECCCcc------c---ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccc----eeeEeeec
Confidence 99999765322 1 22222 37766 99999999
Q ss_pred C--CCEEEEEeCCCcEEEEe
Q 005235 689 R--QPWLFTAGADSVIRLYC 706 (707)
Q Consensus 689 d--g~~L~s~g~Dg~IrlWd 706 (707)
+ +.+|+||+.||+|+||+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 8 78999999999999995
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=279.13 Aligned_cols=260 Identities=14% Similarity=0.153 Sum_probs=223.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+|||+.++++...+.. ...|.+++|+|++ ..+++++.++.|++|++......
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~-------------- 94 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSGE-------------- 94 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTTS--------------
T ss_pred CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCCC--------------
Confidence 4899999999999999999998887776 8999999999999 47888899999999997653210
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
.....+..|...|.+++| ++++|++++.|+ .|++|| ..... ..+ .+...+.+++
T Consensus 95 -----------------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~---~i~~~d--~~~~~-~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 95 -----------------DPLYTLIGHQGNVCSLSF--QDGVVISGSWDK---TAKVWK--EGSLV-YNLQAHNASVWDAK 149 (313)
T ss_dssp -----------------CC-CEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEE--TTEEE-EEEECCSSCEEEEE
T ss_pred -----------------CcccchhhcccCEEEEEe--cCCEEEEEeCCC---CEEEEc--CCcEE-EecccCCCceeEEE
Confidence 111235579999999999 578999999988 999999 44444 556 8899999999
Q ss_pred EeC-CCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 547 FHP-TRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 547 fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
|+| ++.+|++++ |+.|++|| .++....+.. +...|.+++|+|++. |++|+.||.|++||+.++ +++..+.+|.
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~ 225 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHE 225 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred EccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCC
Confidence 998 899999988 89999999 5667777777 888999999999998 999999999999999987 7888999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
..|++++|+|++ .|++++.||.|++| |+.+.. ++..+..|... |.+++|+|++. |++++.||.|+
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iw------d~~~~~---~~~~~~~~~~~----i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIW------SKENGS---LKQVITLPAIS----IWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEE------CTTTCC---EEEEEECSSSC----EEEEEECTTSC-EEEEETTSCEE
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEE------ECCCCc---eeEEEeccCce----EEEEEEccCCC-EEEEeCCCcEE
Confidence 999999999999 58899999999999 444444 37788899877 99999999998 66799999999
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
+|++
T Consensus 291 iw~~ 294 (313)
T 3odt_A 291 IFSQ 294 (313)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9985
No 45
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-32 Score=298.59 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=215.9
Q ss_pred EEecCCcEEEEEEccCCCccEEEEEeC-------CeEEEEECCCCCch------------hcccccceeeeccc------
Q 005235 413 VLEIGEAIQYVAWNPLPELPVLAVSVG-------QDVLILNTGLGNEE------------EQRRVKDLLHVETP------ 467 (707)
Q Consensus 413 ~l~~~~~V~~v~~spdg~~~lla~s~d-------~~V~lwd~~~~~~~------------~~~~~~~v~~~~~~------ 467 (707)
.+..+.+|.|++|+|++ ..|++++.+ +.|++|++...... +..+...+.++.+.
T Consensus 10 ~~~~g~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~ 88 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILV 88 (365)
T ss_dssp EEECSSCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEE
T ss_pred ecCCCCCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEE
Confidence 34446799999999999 344444432 35999998765431 12233333333332
Q ss_pred --------ccccCCCCcEEEEecCCccceE----------EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235 468 --------TAPDDNMASIVSWLQHDKLDGI----------RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 468 --------~~~~~~d~~i~iW~~~~~~~~~----------~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
++.++.++.+++|+........ ...+...+.+++|||+|+++++++.+. +++|+|||+.++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~-d~~i~iwd~~~~ 167 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV-PAIMRIIDPSDL 167 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS-SCEEEEEETTTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC-CCEEEEeECCCC
Confidence 5567788999999876432211 113445689999999999988766322 339999999998
Q ss_pred ceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC----c
Q 005235 530 LSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKK--LETGLKEVSSIAIHPAGDNLIVGSREG----K 603 (707)
Q Consensus 530 ~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg----~ 603 (707)
... ..+.+.+.|.+++|+|++.+|++++++.+++|+..+++.+.. ...|...|.+++|+|+|.++++++.|+ .
T Consensus 168 ~~~-~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 168 TEK-FEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEE-EEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred cEE-EEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 877 677888899999999999999999988889999888766543 345777899999999999999999887 5
Q ss_pred EEEEECCCCCc---ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-eeCCCCCCCC
Q 005235 604 LCWFDMDLSSK---PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGR 679 (707)
Q Consensus 604 I~vwDl~~~~~---~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~ 679 (707)
+.+|++..... ....+.+|...|++++|||+|++||+|+.|++|+|||+ .+.. ++.. +.+|...
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~------~~~~---~~~~~~~gH~~~--- 314 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL------KDLS---MSKIFKQAHSFA--- 314 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET------TTTE---EEEEETTSSSSC---
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC------CCCc---EEEEecCcccCC---
Confidence 78888875522 23567789999999999999999999999999999954 3333 3555 5799988
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|++|+|+|||++|||||.|++||||+|
T Consensus 315 -V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 315 -ITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp -EEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred -EEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999999999999999986
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-32 Score=295.24 Aligned_cols=277 Identities=14% Similarity=0.118 Sum_probs=225.5
Q ss_pred CCCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235 288 KPKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV 359 (707)
Q Consensus 288 k~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~ 359 (707)
...|.||.. +|+|++.+|++++. ++.|+ .........+..+... +..+.++|++
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd-----------~~~~~~~~~~~~~~~~-------v~~~~~sp~g 118 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD-----------SFTTNKEHAVTMPCTW-------VMACAYAPSG 118 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE-----------TTTCCEEEEEECSSSC-------CCEEEECTTS
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEE-----------CCCCCcceEEecCCCC-------EEEEEECCCC
Confidence 346788987 59999999999654 44444 2223333333332222 2455666543
Q ss_pred ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEEe-cCCcEEEEEEccCCCcc
Q 005235 360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG------RCLRVLE-IGEAIQYVAWNPLPELP 432 (707)
Q Consensus 360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg------~~l~~l~-~~~~V~~v~~spdg~~~ 432 (707)
.++++|+.|+++++|++... .....+. +.+.|.+++|+|++ ..
T Consensus 119 -----------------------------~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 168 (354)
T 2pbi_B 119 -----------------------------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQ 168 (354)
T ss_dssp -----------------------------SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SE
T ss_pred -----------------------------CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CE
Confidence 58999999999999998643 2223333 37899999999998 47
Q ss_pred EEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEE
Q 005235 433 VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLS 510 (707)
Q Consensus 433 lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~la 510 (707)
|++++.|++|++||+.++.. ...+.+|...|.+++|+| +|++|+
T Consensus 169 l~t~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQL----------------------------------LQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp EEEEETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EEEEeCCCcEEEEeCCCCeE----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 99999999999999876522 123558999999999987 578999
Q ss_pred EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEE
Q 005235 511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSI 586 (707)
Q Consensus 511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl 586 (707)
+++.|+ .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+++++.+..+..+ ...++++
T Consensus 215 sgs~Dg---~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 215 SGGCDK---KAMVWDMRSGQCV-QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEETTS---CEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEeCCC---eEEEEECCCCcEE-EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 999998 9999999999887 778 8999999999999999999999 999999999998887777543 2468999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
+|+|+|.+|++|+.|+.|++||+.++ .++..+.+|...|++++|+|++.+||+|+.||+|+||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999877 67888999999999999999999999999999999993
No 47
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=330.75 Aligned_cols=307 Identities=13% Similarity=0.118 Sum_probs=238.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~~~~~~ 467 (707)
.+|++|+.||+|+||+..+++++..+.+...|.+|+|+| +. .|++++.|++|++||+.++... ...+...+.++.|.
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~s 107 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTD 107 (902)
T ss_dssp TEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEEC
Confidence 499999999999999999998887777788999999999 63 6999999999999999887542 11244567777776
Q ss_pred -----ccccCCCCcEEEEecCCccce------------EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCC
Q 005235 468 -----TAPDDNMASIVSWLQHDKLDG------------IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 468 -----~~~~~~d~~i~iW~~~~~~~~------------~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
+++++.++.|++|++.+.... ...+|.+.|.+++|+|+ +..|++++.|+ .| +||+.++
T Consensus 108 p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg---~v-lWd~~~~ 183 (902)
T 2oaj_A 108 ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV---TL-TYSLVEN 183 (902)
T ss_dssp TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC---EE-EEETTTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC---cE-EEECCCC
Confidence 888999999999999876542 12468899999999996 57899999888 99 9999998
Q ss_pred ceeeeee-cc------------------CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE--Ee---CC-----
Q 005235 530 LSHRIPF-KL------------------HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK--LE---TG----- 579 (707)
Q Consensus 530 ~~~~~~~-~~------------------~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~--l~---~~----- 579 (707)
... ..+ .+ ...|.+++|+|++.+|++++ |++|++||+.+++++.. +. .|
T Consensus 184 ~~~-~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~ 262 (902)
T 2oaj_A 184 EIK-QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD 262 (902)
T ss_dssp EEE-EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred ceE-EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence 776 566 33 46799999999999999998 99999999976544321 00 00
Q ss_pred --------CCCe--------------------------------------------------------------------
Q 005235 580 --------LKEV-------------------------------------------------------------------- 583 (707)
Q Consensus 580 --------~~~I-------------------------------------------------------------------- 583 (707)
...|
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 342 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence 0011
Q ss_pred --------------------------------------------------------------EEE---------------
Q 005235 584 --------------------------------------------------------------SSI--------------- 586 (707)
Q Consensus 584 --------------------------------------------------------------~sl--------------- 586 (707)
+++
T Consensus 343 ~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~ 422 (902)
T 2oaj_A 343 VPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS 422 (902)
T ss_dssp SCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHh
Confidence 111
Q ss_pred -------------------EEcCCCCEEEEEECCCcEEEEECCCCCcc----eEE-ee-----cCCCCEEEEEEcCCCCE
Q 005235 587 -------------------AIHPAGDNLIVGSREGKLCWFDMDLSSKP----YRV-LK-----CHPKDITNVAFHRSYPL 637 (707)
Q Consensus 587 -------------------~~spdg~~L~sGs~Dg~I~vwDl~~~~~~----~~~-l~-----~h~~~I~~vafspdg~l 637 (707)
+|+|+|++|++|+.|++|++||+.++... +.. +. +|...|++|+|+|++++
T Consensus 423 ~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~ 502 (902)
T 2oaj_A 423 AAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE 502 (902)
T ss_dssp TTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE
T ss_pred cccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe
Confidence 22456677888888888888888765210 110 11 78899999999999999
Q ss_pred EEEEeCCCcEEEEecccccC--------------------CCCCC----------------cccceEEeeCCCCCCCCCe
Q 005235 638 FASCSDDCTAYVFHGMVYSD--------------------LNQNP----------------LIVPLEILRGHTSSNGRGV 681 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~~~~~D--------------------l~~~~----------------~~~pl~~l~gh~~~~~~gV 681 (707)
||+|+.||+|+||++..... +...+ ...++..+.+|... |
T Consensus 503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~----V 578 (902)
T 2oaj_A 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK----T 578 (902)
T ss_dssp EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS----E
T ss_pred EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc----E
Confidence 99999999999998764310 00000 01357889999987 9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 682 MDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 682 ~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++|+|+|+| +||+|+.|++|+|||+
T Consensus 579 ~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 579 SAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp EEEEECBTS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 999999999 9999999999999985
No 48
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=293.11 Aligned_cols=260 Identities=18% Similarity=0.252 Sum_probs=212.1
Q ss_pred eEEEEEec-C-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235 409 RCLRVLEI-G-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL 486 (707)
Q Consensus 409 ~~l~~l~~-~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~ 486 (707)
.++.++.. . +.|.+|+|+|+| ..|++++.|++|+||++..+... . .
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~------------------------~-------~ 53 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI------------------------C-------K 53 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE------------------------E-------E
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce------------------------e-------e
Confidence 45666765 3 489999999999 47888999999999997553110 0 0
Q ss_pred ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
.....+|...|.+++|+|+|++|++++.|+ .|+||++...... ...+ .|.+.|.+++|+|++.+|++++ |++|+
T Consensus 54 ~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~ 130 (345)
T 3fm0_A 54 SVLSEGHQRTVRKVAWSPCGNYLASASFDA---TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130 (345)
T ss_dssp EEECSSCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeccccCCcEEEEEECCCCCEEEEEECCC---cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEE
Confidence 001247999999999999999999999998 9999999876532 1556 8999999999999999999998 99999
Q ss_pred EEECCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEE
Q 005235 564 VYDLLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFA 639 (707)
Q Consensus 564 iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~lla 639 (707)
+||+.++ .++..+.+|...|.+++|+|++.+|++|+.|+.|++||+..+. .+..++.+|...|++++|+|++.+||
T Consensus 131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 9999875 4567788899999999999999999999999999999998652 24578899999999999999999999
Q ss_pred EEeCCCcEEEEecccccCCCC------CCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 640 SCSDDCTAYVFHGMVYSDLNQ------NPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 640 Sgs~Dg~I~Vwd~~~~~Dl~~------~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|+.||+|+||+......... .+...++..+.+ |... |.+++|+|++..|++++.|++|++|++
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT----IYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC----EEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc----EEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999999997643221110 112234555666 6666 999999999999999999999999973
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.8e-32 Score=300.30 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=252.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~ 465 (707)
.++++|+.||+|+|||+.+++++..+.. .+.|.+++|+++ .+++++.|+.|++|++.++.. .+..+...+.++.
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 206 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC---EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence 5899999999999999999999998886 889999999843 699999999999999988754 3445667777776
Q ss_pred cc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235 466 TP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG 540 (707)
Q Consensus 466 ~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~ 540 (707)
+. +++++.++.+.+|+....... .+.+|...|.+++| +|.+|++++.|+ .|++||+.++... ..+ .|..
T Consensus 207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~iwd~~~~~~~-~~~~~~~~ 280 (445)
T 2ovr_B 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF---MVKVWDPETETCL-HTLQGHTN 280 (445)
T ss_dssp EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS---CEEEEEGGGTEEE-EEECCCSS
T ss_pred ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC---EEEEEECCCCcEe-EEecCCCC
Confidence 65 888999999999999866543 46789999999999 789999999988 9999999998877 777 8899
Q ss_pred CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
.|.+++| ++.++++++ |+.|++||+.+++++..+.+|...+.++.++ +.+|++|+.||.|++||+.++ .++..+
T Consensus 281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 355 (445)
T 2ovr_B 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-QCLQTL 355 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 9999999 788899988 9999999999999999999999999988875 679999999999999999877 678888
Q ss_pred ec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe-----eCCCCCCCCCeeEEEEcCCCC
Q 005235 620 KC---HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL-----RGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 620 ~~---h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l-----~gh~~~~~~gV~~l~fspdg~ 691 (707)
.. |...|++++|+ +.+|++|+.||.|+||++ .++.. +..+ .+|... |.+++|+|++.
T Consensus 356 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~------~~~~~---~~~~~~~~~~~~~~~----v~~~~~s~~~~ 420 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL------KTGEF---IRNLVTLESGGSGGV----VWRIRASNTKL 420 (445)
T ss_dssp CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET------TTCCE---EEEEEECTTGGGTCE----EEEEEECSSEE
T ss_pred ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC------CCCce---eeeeeccccCCCCce----EEEEEecCCEE
Confidence 76 88899999996 579999999999999954 44443 4444 356665 99999999999
Q ss_pred EEEEEeCCCc----EEEEeC
Q 005235 692 WLFTAGADSV----IRLYCH 707 (707)
Q Consensus 692 ~L~s~g~Dg~----IrlWdl 707 (707)
+|++|+.||+ |.+||+
T Consensus 421 ~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp EEEEECSSSSSCCEEEEEEC
T ss_pred EEEEcccCCCCccEEEEEEC
Confidence 9999999998 999986
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=322.68 Aligned_cols=302 Identities=10% Similarity=0.033 Sum_probs=221.6
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEE----EEEec-CCcEEEEEEccCC-----CccEEEEEeCCeEEEEECCCCCc--
Q 005235 385 PVACYLEYKGSTDGTVRIWEVESGRCL----RVLEI-GEAIQYVAWNPLP-----ELPVLAVSVGQDVLILNTGLGNE-- 452 (707)
Q Consensus 385 p~~~~~l~sgs~DgtVrIWd~~tg~~l----~~l~~-~~~V~~v~~spdg-----~~~lla~s~d~~V~lwd~~~~~~-- 452 (707)
+....++++|+.|++|+||++.++++. .++.+ .+.|.+|+|+|++ ...|++++.|++|+||++..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 455668899999999999999887642 33444 6889999999971 13677788999999999976632
Q ss_pred -----------hhcccccceeeeccc----ccccCCCCcEEEEecCCcc-c-eEEeccCCCeEEE--EEcCCC-CEEEEE
Q 005235 453 -----------EEQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKL-D-GIRLRHFKMVSSV--EWHRRG-DYLSTV 512 (707)
Q Consensus 453 -----------~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~-~-~~~~~h~~~V~~v--~~sp~g-~~lat~ 512 (707)
.+..+...+.++.|. +++++.|++|++|++.... . ..+.+|...|.+| +|+++| .+||++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 234466777788775 8999999999999998543 2 3467899999999 568888 899999
Q ss_pred eCCCCccEEEEEECCCCceeeeee-ccC--CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235 513 MPAGESRAIFMHQLSKKLSHRIPF-KLH--GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAI 588 (707)
Q Consensus 513 s~dg~~~~V~Iwdl~~~~~~~~~~-~~~--~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~ 588 (707)
+.|+ +|+|||+++.... ..+ .+. ..|.+++|+|++..|++++ |++|++||++++.++.++.+|...|++|+|
T Consensus 330 S~D~---tvklWD~~~~~~~-~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 330 AVDG---YFYIFNPKDIATT-KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV 405 (524)
T ss_dssp ETTS---EEEEECGGGHHHH-CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred ccCC---eEEEEECCCCCcc-cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe
Confidence 9999 9999999887765 555 443 3588999999999998887 899999999999888889999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL 663 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~ 663 (707)
+|+|.+|++|+.||+|++||+... .+..+.. +...|.+++|+|++..+. ..++ +.+|.. . .++
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~----~-~~g-- 473 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPL----T-VND-- 473 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC------------
T ss_pred CCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceeccc----c-cCC--
Confidence 999999999999999999998643 2222211 122578999999998552 2222 223311 1 011
Q ss_pred ccceEEeeCCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEeC
Q 005235 664 IVPLEILRGHTSSNGRGVMDCKFHPRQP---WLFTAGADSVIRLYCH 707 (707)
Q Consensus 664 ~~pl~~l~gh~~~~~~gV~~l~fspdg~---~L~s~g~Dg~IrlWdl 707 (707)
..+..+.+|... |.+|+|+|+++ +||+|+.||+|+||+|
T Consensus 474 -~~~~~l~gh~~~----V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 474 -VSKAKIDAHGIN----ITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp ---------CCCS----CCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred -cceeeecCCCce----EEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 236788999887 99999999965 9999999999999986
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.9e-32 Score=284.12 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=229.3
Q ss_pred CCCCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235 287 PKPKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR 358 (707)
Q Consensus 287 pk~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr 358 (707)
++..+.||.. +|+|++++|++.+. ++.|. .......+.+.++ ...+..+.|+|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~-----------~~~~~~~~~~~~h-------~~~v~~~~~~~~ 76 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----------AYDGKFEKTISGH-------KLGISDVAWSSD 76 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE-----------TTTCCEEEEECCC-------SSCEEEEEECTT
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEe-----------CCCcccchhhccC-------CCceEEEEEcCC
Confidence 3456788876 59999999998554 34443 2233333333333 334467777765
Q ss_pred cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE
Q 005235 359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS 437 (707)
Q Consensus 359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s 437 (707)
. .++++|+.||+|+|||+.+++++..+.. ...|.+++|+|++ ..+++++
T Consensus 77 ~-----------------------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~ 126 (312)
T 4ery_A 77 S-----------------------------NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS 126 (312)
T ss_dssp S-----------------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEE
T ss_pred C-----------------------------CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEe
Confidence 4 4899999999999999999999999887 7889999999999 4788888
Q ss_pred eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC
Q 005235 438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE 517 (707)
Q Consensus 438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~ 517 (707)
.|+.|++||+.++.. ...+..|...|.+++|+|+|.+|++++.|+
T Consensus 127 ~d~~i~iwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~- 171 (312)
T 4ery_A 127 FDESVRIWDVKTGKC----------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG- 171 (312)
T ss_dssp TTSCEEEEETTTCCE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred CCCcEEEEECCCCEE----------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence 999999999876421 113457889999999999999999999998
Q ss_pred ccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCe---EEEEEcCC
Q 005235 518 SRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEV---SSIAIHPA 591 (707)
Q Consensus 518 ~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I---~sl~~spd 591 (707)
.|++||+.++... ..+ .+...+.+++|+|++.+|++++ |+.|++||+.+++++..+.+|...+ ......++
T Consensus 172 --~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 172 --LCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp --CEEEEETTTCCEE-EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred --cEEEEECCCCcee-eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 9999999998876 555 5677899999999999999998 9999999999999999998876543 23334477
Q ss_pred CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEec
Q 005235 592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHG 652 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~ 652 (707)
+.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++++|++++ .|++|+||+.
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999999877 78899999999999999999999999997 6999999953
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=304.66 Aligned_cols=280 Identities=13% Similarity=0.186 Sum_probs=214.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC--eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 386 VACYLEYKGSTDGTVRIWEVESG--RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg--~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.++.++++|+.||+|+||++.++ +++..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++...
T Consensus 21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~--------- 90 (377)
T 3dwl_C 21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTW--------- 90 (377)
T ss_dssp SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CC---------
T ss_pred CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCce---------
Confidence 34569999999999999999998 67777765 7899999999998 47888999999999998765300
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce---eeeee-c-
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS---HRIPF-K- 537 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~---~~~~~-~- 537 (707)
.....+..|...|.+++|+|++++|++++.|+ .|++|++..... . ..+ .
T Consensus 91 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~~~~ 144 (377)
T 3dwl_C 91 ----------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVS-KHLKRP 144 (377)
T ss_dssp ----------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCC-EEECSS
T ss_pred ----------------------eeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceee-eEeecc
Confidence 01113457899999999999999999999988 999999998763 3 555 5
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sG 598 (707)
|.+.|.+++|+|++.+|++++ |+.|++||+. .++++..+ .|...|.+++|+|+|.+|++|
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence 899999999999999999998 8999999985 35566677 888999999999999999999
Q ss_pred ECCCcEEEEECCCCCcc---eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc-----CCCCCC--c-----
Q 005235 599 SREGKLCWFDMDLSSKP---YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS-----DLNQNP--L----- 663 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~-----Dl~~~~--~----- 663 (707)
+.||.|++||+.++..+ +..+.+|...|++++|+|++.+|++|++++.+ +|+..... .+.... .
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT 302 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence 99999999999987431 67888999999999999999999999877766 66543110 000000 0
Q ss_pred ---------ccce------E----------------EeeCCCCCCCCCeeEEEEcCCCC----EEEEEeCCCcEEEEeC
Q 005235 664 ---------IVPL------E----------------ILRGHTSSNGRGVMDCKFHPRQP----WLFTAGADSVIRLYCH 707 (707)
Q Consensus 664 ---------~~pl------~----------------~l~gh~~~~~~gV~~l~fspdg~----~L~s~g~Dg~IrlWdl 707 (707)
...+ . ...+|... |+++++.+... .|+|||.||+|+||++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~----i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM----IATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSBCCCCCC-------------------------CCCSSSCSSC----EEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccchhhccccccccccCccccce----eEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 1 11237776 99999776543 6999999999999996
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.5e-32 Score=283.04 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=200.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.+++|+|+| ..|++++.|++|+||++..... .....+.+|.+.
T Consensus 9 ~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~--------------------------------~~~~~l~gH~~~ 55 (297)
T 2pm7_B 9 NEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETH--------------------------------KLIDTLTGHEGP 55 (297)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCB--------------------------------CCCEEECCCSSC
T ss_pred cCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCc--------------------------------EEEEEEccccCC
Confidence 6789999999999 4788889999999999754211 112245689999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235 497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~ 569 (707)
|.+++|++ +|++|++++.|+ +|+|||+.++... ...+ .|...|.+++|+|+ +.+|++++ |++|++||+.+
T Consensus 56 V~~v~~s~~~~g~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 56 VWRVDWAHPKFGTILASCSYDG---KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTT---EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred eEEEEecCCCcCCEEEEEcCCC---EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 99999986 489999999998 9999999877422 1445 78899999999997 88999988 99999999987
Q ss_pred Ce--EEEEEeCCCCCeEEEEEcCC-------------CCEEEEEECCCcEEEEECCCCCc---ceEEeecCCCCEEEEEE
Q 005235 570 QR--LIKKLETGLKEVSSIAIHPA-------------GDNLIVGSREGKLCWFDMDLSSK---PYRVLKCHPKDITNVAF 631 (707)
Q Consensus 570 ~~--~~~~l~~~~~~I~sl~~spd-------------g~~L~sGs~Dg~I~vwDl~~~~~---~~~~l~~h~~~I~~vaf 631 (707)
+. ....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. +...+.+|...|++|+|
T Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212 (297)
T ss_dssp SSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred CCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence 53 24567889999999999997 57999999999999999987632 55678899999999999
Q ss_pred cCCC---CEEEEEeCCCcEEEEecccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 632 HRSY---PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 632 spdg---~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+|++ .+||+|+.|++|+||+.... ..+. ....+ .+|... |.+++|+|++++|++++.||+|+||+
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~----~~~~--~~~~~~~~~~~~~----v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNE----QGPW--KKTLLKEEKFPDV----LWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESST----TSCC--EEEESSSSCCSSC----EEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCC----CCcc--ceeeeecccCCCc----EEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 9985 79999999999999965421 1111 12233 456665 99999999999999999999999997
Q ss_pred C
Q 005235 707 H 707 (707)
Q Consensus 707 l 707 (707)
.
T Consensus 283 ~ 283 (297)
T 2pm7_B 283 E 283 (297)
T ss_dssp E
T ss_pred E
Confidence 3
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-31 Score=314.94 Aligned_cols=324 Identities=14% Similarity=0.149 Sum_probs=265.6
Q ss_pred ccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEE
Q 005235 343 VKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQ 421 (707)
Q Consensus 343 i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~ 421 (707)
+..|..++..+.|+|++ .++++|+.||+|+|||+.+++++..+.. .+.|.
T Consensus 9 ~~~h~~~v~~i~~sp~~-----------------------------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~ 59 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTE-----------------------------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR 59 (814)
T ss_dssp EEEECSCEEEEEECSSS-----------------------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred eecCCCceEEEEECCCC-----------------------------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE
Confidence 34555666778888765 4899999999999999999999999986 88999
Q ss_pred EEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCcc--ceEEec
Q 005235 422 YVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKL--DGIRLR 492 (707)
Q Consensus 422 ~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~--~~~~~~ 492 (707)
+++|+|++ ..|++++.++.|++|++.++.. .+..+...+.++.|+ +++++.++.+.+|+..... ...+.+
T Consensus 60 ~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 60 AGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred EEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 99999999 4788888999999999998865 445677788888886 7889999999999998652 234678
Q ss_pred cCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeC--CCCEEEEEe-CCeEEEEE
Q 005235 493 HFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 493 h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~s-dg~I~iwD 566 (707)
|...|.+++|+| ++.+|++++.|+ .|++|++...... ..+ .+...+.+++|+| ++.+|++++ ++.|++||
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg---~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDR---TVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTS---EEEEEETTCSSCS-EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcce-eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999 889999999988 9999999887766 555 4458999999999 999999998 89999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC--EEEEEeCC
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP--LFASCSDD 644 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~--llaSgs~D 644 (707)
+.+++.+..+.+|...|++++|+|+|.+|++|+.||.|++||+.++ .+...+..|...|++++|+|++. ++++++ +
T Consensus 215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 292 (814)
T 3mkq_A 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGF-D 292 (814)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEEe-C
Confidence 9999999999999999999999999999999999999999999887 78889999999999999999987 466655 5
Q ss_pred CcEEEEecccccCCC----CC------------------------------CcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 645 CTAYVFHGMVYSDLN----QN------------------------------PLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 645 g~I~Vwd~~~~~Dl~----~~------------------------------~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
+.+.+|+........ .+ ........+..+... +.+++|+|+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg 368 (814)
T 3mkq_A 293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF----PQSLAHSPNG 368 (814)
T ss_dssp TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC----CSEEEECTTS
T ss_pred CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC----CceeEECCCC
Confidence 567788643110000 00 000011222334333 7899999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 005235 691 PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 691 ~~L~s~g~Dg~IrlWdl 707 (707)
++|++++ ||.+.+|++
T Consensus 369 ~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp SEEEEEE-TTEEEEEET
T ss_pred CEEEEec-CCEEEEEEC
Confidence 9998888 889999974
No 55
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-31 Score=292.66 Aligned_cols=263 Identities=17% Similarity=0.234 Sum_probs=221.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
++|++|. |++|+|||+.+|+++..+.. ...|++|+|+|+| ..|++++.|+.|+||++.++..
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~------------- 181 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR------------- 181 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-------------
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcE-------------
Confidence 4777765 89999999999999988875 5679999999999 4788889999999999876521
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS 544 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~ 544 (707)
.....+|...+.+++|+ +.+|++++.|+ .+.+|+..........+ .|...+..
T Consensus 182 ---------------------~~~~~~h~~~v~~~s~~--~~~l~sgs~d~---~i~~~d~~~~~~~~~~~~~h~~~~~~ 235 (420)
T 4gga_A 182 ---------------------LRNMTSHSARVGSLSWN--SYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCG 235 (420)
T ss_dssp ---------------------EEEECCCSSCEEEEEEE--TTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ---------------------EEEEeCCCCceEEEeeC--CCEEEEEeCCC---ceeEeeecccceeeEEecccccceee
Confidence 12355789999988875 68999999998 99999998876654566 89999999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCC-EEEE--EECCCcEEEEECCCCCcce
Q 005235 545 SVFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGD-NLIV--GSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 545 v~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~-~L~s--Gs~Dg~I~vwDl~~~~~~~ 616 (707)
+.|+|++.++++++ |+.|++|++.+++ .+.....|...|.+++|+|.+. .+++ |+.|+.|++||+.++ .+.
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~ 314 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL 314 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEE
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccc
Confidence 99999999999998 9999999998763 4566778889999999999764 5554 457999999999987 677
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 617 RVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 617 ~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
..+..| ..+.++.|+|++..+++++ .||.|+||++ .+.. ++..+.||... |++++|+|+|.+|+
T Consensus 315 ~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~------~~~~---~v~~l~gH~~~----V~~l~~spdg~~l~ 380 (420)
T 4gga_A 315 SAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY------PTMA---KVAELKGHTSR----VLSLTMSPDGATVA 380 (420)
T ss_dssp EEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEET------TTCC---EEEEECCCSSC----EEEEEECTTSSCEE
T ss_pred eeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEEC------CCCc---EEEEEcCCCCC----EEEEEEcCCCCEEE
Confidence 777755 5689999999999887765 7999999954 3433 48899999988 99999999999999
Q ss_pred EEeCCCcEEEEeC
Q 005235 695 TAGADSVIRLYCH 707 (707)
Q Consensus 695 s~g~Dg~IrlWdl 707 (707)
|||.||+|+||++
T Consensus 381 S~s~D~tvriWdv 393 (420)
T 4gga_A 381 SAAADETLRLWRC 393 (420)
T ss_dssp EEETTTEEEEECC
T ss_pred EEecCCeEEEEEC
Confidence 9999999999986
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-31 Score=294.04 Aligned_cols=290 Identities=12% Similarity=0.142 Sum_probs=242.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~ 465 (707)
.++++|+.||+|++||+.+++++..+.. .+.|.+++|+|++ .+++++.|++|++||+.++.. .+..+...+.++.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 4899999999999999999999999986 8999999999998 799999999999999998754 3445667776665
Q ss_pred cc-------ccccCCCCcEEEEecCCcc------------------------ceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235 466 TP-------TAPDDNMASIVSWLQHDKL------------------------DGIRLRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 466 ~~-------~~~~~~d~~i~iW~~~~~~------------------------~~~~~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
+. +++++.++.+++|+..... .....+|...|.++ ++++++|++++.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 53 7889999999999987543 22356788888877 567999999999
Q ss_pred CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235 515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg 592 (707)
|+ .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |+.|++||+.+++++.++.+|...|.+++|+ +
T Consensus 289 d~---~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 362 (464)
T 3v7d_B 289 DN---TLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362 (464)
T ss_dssp TS---CEEEEETTTTEEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--S
T ss_pred CC---eEEEEECCCCcEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--C
Confidence 98 9999999998887 777 8999999999999999999998 8999999999999999999999999999997 5
Q ss_pred CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-ee
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LR 671 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~ 671 (707)
.+|++|+.||.|++||+.+.. ....+ .|...+..++|++++.+|++|+ ||.|+|||+ .++.. +.. +.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~------~~g~~---~~~~~~ 430 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYS-RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNL------RSGKL---VHANIL 430 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCC-EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEET------TTCCE---EESCTT
T ss_pred CEEEEEeCCCcEEEEECCCCc-eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEEC------CCCcE---Eehhhc
Confidence 899999999999999998763 33333 3667788899999999999998 899999954 44433 332 45
Q ss_pred CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+|... |.+++|+ ....+++++.||.+.+|
T Consensus 431 ~~~~~----v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 431 KDADQ----IWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTCSE----EEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCc----EEEEEec-CCEEEEEEEeCCeEEEE
Confidence 66665 9999997 33455566677766655
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-32 Score=292.75 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=233.8
Q ss_pred CcEEEEeCCCCeEE-EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC----CCCCc--------hhcc--------
Q 005235 398 GTVRIWEVESGRCL-RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT----GLGNE--------EEQR-------- 456 (707)
Q Consensus 398 gtVrIWd~~tg~~l-~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~----~~~~~--------~~~~-------- 456 (707)
..+.+|++...... ....+.+.|.+++|+|++...|++++.++.|++|++ .++.. .+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 34667887655433 333347899999999999326778888999999999 77651 1111
Q ss_pred --cccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235 457 --RVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK 529 (707)
Q Consensus 457 --~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~ 529 (707)
+...+.++.|+ +++++.++.+.+|+..+.....+..|...|.+++|+|++.+|++++.++ .|++|++.++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~ 181 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN---VTILWNVISG 181 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC---CEEEEETTTT
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCC---eEEEEECCCC
Confidence 35577777776 7888999999999966666666788999999999999999999999988 9999999988
Q ss_pred ceeeeee-ccCCC---------------eEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235 530 LSHRIPF-KLHGL---------------PVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD 593 (707)
Q Consensus 530 ~~~~~~~-~~~~~---------------V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~ 593 (707)
... ..+ .+... +.+++|+|++.+++.+.++.|++||+.+++.+..+..|...|.+++|+|++.
T Consensus 182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 182 TVM-QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EEE-EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred cEE-EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 776 666 44444 8999999987644444499999999999998889999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235 594 NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
+|++|+.||.|++||+..+ .+...+..|...|.+++|+|++ +|++++.||.|++|++ .+.. ++..+.+|
T Consensus 261 ~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~------~~~~---~~~~~~~~ 329 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL------KQNT---LLALSIVD 329 (425)
T ss_dssp EEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET------TTTE---EEEEEECT
T ss_pred EEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC------CCCc---EeEecccC
Confidence 9999999999999999876 7788899999999999999999 9999999999999954 3333 47778888
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
... |.+++|+|++.+|++++.||.|++|++
T Consensus 330 ~~~----i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 330 GVP----IFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TCC----EEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred Ccc----EEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 877 999999999999999999999999986
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-31 Score=281.18 Aligned_cols=257 Identities=16% Similarity=0.145 Sum_probs=204.1
Q ss_pred CCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235 406 ESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD 484 (707)
Q Consensus 406 ~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~ 484 (707)
.+.+++.++.. .+.|.+++|+|+ .|++++.|++|++|++..+....
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~------------------------------ 48 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL------------------------------ 48 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE------------------------------
T ss_pred cccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE------------------------------
Confidence 34567777776 889999999987 58899999999999986532100
Q ss_pred ccceEE-ec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC-------ceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 485 KLDGIR-LR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK-------LSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 485 ~~~~~~-~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
...+ .. |...|.+++|+|+|.+|++++.|+ .|+||++... ... ..+ .|.+.|.+++|+|++.+|
T Consensus 49 --~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~l 122 (330)
T 2hes_X 49 --IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS---TVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYL 122 (330)
T ss_dssp --EEEECTTCCCSCEEEEEECTTSSEEEEEETTS---CEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEE
T ss_pred --EEEEecCCccCCEEEEEECCCCCEEEEEeCCC---cEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEE
Confidence 0112 23 899999999999999999999998 9999998532 223 456 899999999999999999
Q ss_pred EEEe-CCeEEEEECCC----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEE
Q 005235 555 FVST-KKNIRVYDLLK----QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITN 628 (707)
Q Consensus 555 ~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~ 628 (707)
++++ |++|++||+.. .+++..+.+|...|.+++|+|++.+|++|+.|+.|++||+..+. .++..+.+|...|.+
T Consensus 123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 9998 99999999943 36778899999999999999999999999999999999987542 567889999999999
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 629 VAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 629 vafspd--g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
++|+|+ +.+|++|+.|++|+||++....... .....++..+.+ |... |.+++|++++ +|++++.||+|+||
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~~~~h~~~----v~~v~~s~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-QQEWVCEAILPDVHKRQ----VYNVAWGFNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTS-CEEEEEEEECCSCCSSC----EEEEEECTTS-CEEEEETTSCEEEE
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccc-cceeEEeeecccccccc----eEEEEEcCCC-EEEEEeCCCEEEEE
Confidence 999998 6799999999999999875432111 111123455555 7776 9999999765 89999999999999
Q ss_pred eC
Q 005235 706 CH 707 (707)
Q Consensus 706 dl 707 (707)
++
T Consensus 277 ~~ 278 (330)
T 2hes_X 277 EE 278 (330)
T ss_dssp EE
T ss_pred Ec
Confidence 73
No 59
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-32 Score=296.53 Aligned_cols=263 Identities=17% Similarity=0.214 Sum_probs=219.0
Q ss_pred CcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235 398 GTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~ 476 (707)
.++..|+..+..+.+++.+ .+.|++++|+|++ ..|++++.|++|+|||+.++..
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~------------------------ 100 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQK------------------------ 100 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE------------------------
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc------------------------
Confidence 3455677778888888887 8899999999999 4799999999999999766521
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce------eeeee-ccCCCeEEEEEeC
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS------HRIPF-KLHGLPVSSVFHP 549 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~------~~~~~-~~~~~V~~v~fsp 549 (707)
...+..|...|.+++|+|+|++|++++.|+ .|+||++..... ....+ +|.+.|.+++|+|
T Consensus 101 ----------~~~~~~h~~~v~~~~~s~~g~~las~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~ 167 (380)
T 3iz6_a 101 ----------THAIKLHCPWVMECAFAPNGQSVACGGLDS---ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167 (380)
T ss_dssp ----------EEEEECCCTTCCCCEECTTSSEEEECCSSS---CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred ----------ceEEecCCCCEEEEEECCCCCEEEEeeCCC---cEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence 123557899999999999999999999998 999999975321 11345 8899999999999
Q ss_pred CC-CEEEEEe-CCeEEEEECCCCeEEEEE-----eCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 550 TR-SIFFVST-KKNIRVYDLLKQRLIKKL-----ETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 550 d~-~~l~v~s-dg~I~iwDl~~~~~~~~l-----~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
++ ..|++|+ |++|++||+.+++.+..+ .+|...|.+++|+| ++.+|++|+.|+.|++||++....++..+.+
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~ 247 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC
Confidence 74 4678887 999999999999988887 57888899999987 8899999999999999999866678899999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC---CCCCeeEEEEcCCCCEEEEEeC
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS---NGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~---~~~gV~~l~fspdg~~L~s~g~ 698 (707)
|...|++++|+|++.+|++|+.||+|+|||+. ++.. +..+..+... ....|.+++|+|+|.+|++|+.
T Consensus 248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~------~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 318 (380)
T 3iz6_a 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR------TGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318 (380)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSCEEEEETT------TTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred cCCCeEEEEEecCCCeEEEEcCCCeEEEEECC------CCcE---EEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence 99999999999999999999999999999654 3322 4445443221 1123899999999999999999
Q ss_pred CCcEEEEeC
Q 005235 699 DSVIRLYCH 707 (707)
Q Consensus 699 Dg~IrlWdl 707 (707)
||.|++||+
T Consensus 319 dg~i~vwd~ 327 (380)
T 3iz6_a 319 NGDCYVWDT 327 (380)
T ss_dssp TSCEEEEET
T ss_pred CCCEEEEEC
Confidence 999999984
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-30 Score=271.62 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=216.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
+|++| .|++|+|||+.+|++++.+.. ...|++|+|+|++ ..+++++.|++|++|++.++..
T Consensus 38 ~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~-------------- 101 (318)
T 4ggc_A 38 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR-------------- 101 (318)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE--------------
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCcee--------------
Confidence 66665 599999999999999998875 6679999999999 4788899999999999876522
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
.....+|...+.++.+ ++..+++++.++ .+.+|+..........+ .|...+.++
T Consensus 102 --------------------~~~~~~h~~~~~~~~~--~~~~l~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (318)
T 4ggc_A 102 --------------------LRNMTSHSARVGSLSW--NSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGL 156 (318)
T ss_dssp --------------------EEEEECCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred --------------------EEEecCccceEEEeec--CCCEEEEEecCC---ceEeeecCCCceeEEEEcCccCceEEE
Confidence 1134578777776554 578999999988 99999998876653556 899999999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEE---EEEECCCcEEEEECCCCCcceE
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNL---IVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L---~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
.|++++.+|++++ |+.|++||+.+++ .......+...|.+++++|.+..+ ++|+.++.|++||.... ....
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~ 235 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLS 235 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEE
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-cccc
Confidence 9999999999998 8999999998764 345566677889999999987543 45677899999999876 3333
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
...+...+..+.|+|.+..+++++ .|++|+|||+ .+.. ++..+.+|... |++++|+|++++|+|
T Consensus 236 -~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~------~~~~---~~~~l~gH~~~----V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 236 -AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY------PTMA---KVAELKGHTSR----VLSLTMSPDGATVAS 301 (318)
T ss_dssp -EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET------TTCC---EEEEECCCSSC----EEEEEECTTSSCEEE
T ss_pred -cccceeeeeeeeecccccceEEEEEcCCCEEEEEEC------CCCc---EEEEEcCCCCC----EEEEEEcCCCCEEEE
Confidence 345778899999999999777655 7999999954 3443 48899999988 999999999999999
Q ss_pred EeCCCcEEEEeC
Q 005235 696 AGADSVIRLYCH 707 (707)
Q Consensus 696 ~g~Dg~IrlWdl 707 (707)
||.||+|+|||+
T Consensus 302 ~s~D~~v~iWd~ 313 (318)
T 4ggc_A 302 AAADETLRLWRC 313 (318)
T ss_dssp EETTTEEEEECC
T ss_pred EecCCeEEEEEC
Confidence 999999999986
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-30 Score=274.63 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=221.0
Q ss_pred cEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.+++.+..++.+.+|.... .+.+..+.+.+.|.+++|+|++ .+++++.++.|++|++.++....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~dg~i~iw~~~~~~~~~------------- 86 (337)
T 1gxr_A 22 QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISHPGNKS------------- 86 (337)
T ss_dssp CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSS--SEEEEECBSEEEEEETTSTTCCS-------------
T ss_pred CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCC--cEEEEcCCCeEEEEECCCCCcee-------------
Confidence 4676666666666665544 3455556668999999999999 35555559999999987653210
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSS 545 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v 545 (707)
.+... ....|...|.+++|+|++++|++++.++ .|++|++.+..... ..+ .+...|.++
T Consensus 87 --------~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 87 --------PVSQL--------DCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp --------CSEEE--------ECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred --------eeecc--------cccCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCCcceeeecccCCCceEEE
Confidence 00000 1226889999999999999999999988 99999999877321 445 788899999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235 546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
+|+|++.+|++++ ++.|++||+.+++.+..+..|...|.+++|+|++.+|++++.||.|++||+.++ ++...+. |..
T Consensus 148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~ 225 (337)
T 1gxr_A 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTS 225 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSS
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCC
Confidence 9999999999998 899999999999999999999999999999999999999999999999999876 5666554 778
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
.+.+++|+|++.+|++++.||.|++|+.. ... ...+.+|... |.+++|+|++++|++++.||.|++
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~------~~~----~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN------KPD----KYQLHLHESC----VLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT------SSC----EEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECC------CCC----eEEEcCCccc----eeEEEECCCCCEEEEecCCCcEEE
Confidence 89999999999999999999999999654 332 3467788877 999999999999999999999999
Q ss_pred EeC
Q 005235 705 YCH 707 (707)
Q Consensus 705 Wdl 707 (707)
|++
T Consensus 292 ~~~ 294 (337)
T 1gxr_A 292 WRT 294 (337)
T ss_dssp EET
T ss_pred EEC
Confidence 985
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-31 Score=279.19 Aligned_cols=289 Identities=17% Similarity=0.204 Sum_probs=235.9
Q ss_pred CCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235 289 PKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361 (707)
Q Consensus 289 ~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k 361 (707)
..|.||.. +|+|++.+|++.+. +..+ |.......++.+.++... +..+.|+|+.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~~-------v~~~~~~~~~-- 86 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSK----------DSSASVWYSLNGERLGTLDGHTGT-------IWSIDVDCFT-- 86 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEES----------SSCEEEEETTTCCEEEEECCCSSC-------EEEEEECTTS--
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCchhhhhhhhcCCc-------EEEEEEcCCC--
Confidence 35778876 59999999998654 3333 333444455555444443 3677777654
Q ss_pred ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC--
Q 005235 362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-- 439 (707)
Q Consensus 362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-- 439 (707)
.++++|+.||+|+|||+.+++++..+.....|.+++|+|++. .+++++.+
T Consensus 87 ---------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~ 138 (369)
T 3zwl_B 87 ---------------------------KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN-YFLAILDNVM 138 (369)
T ss_dssp ---------------------------SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSS-EEEEEECCBT
T ss_pred ---------------------------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCC-EEEEecCCcc
Confidence 489999999999999999999999999999999999999994 67777777
Q ss_pred ---CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC--CeEEEEEcCCCCEEEEEeC
Q 005235 440 ---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK--MVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 440 ---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~--~V~~v~~sp~g~~lat~s~ 514 (707)
+.|.+|++....... . +.............|.. .+.+++|+|++++|++++.
T Consensus 139 ~~~g~i~~~d~~~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATH---------------------E--LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp TBCCEEEEEEEEECTTTC---------------------C--EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred CCCCEEEEEEecCCccce---------------------e--ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence 899999976653211 0 01111112223445666 9999999999999999999
Q ss_pred CCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC
Q 005235 515 AGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA 591 (707)
Q Consensus 515 dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd 591 (707)
++ .|.+||+.+ .... ..+ .+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 196 dg---~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (369)
T 3zwl_B 196 DG---KISKYDVSNNYEYV-DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPL 270 (369)
T ss_dssp TS---EEEEEETTTTTEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred CC---EEEEEECCCCcEeE-EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCC
Confidence 88 999999998 4444 666 8899999999999999999998 8999999999999998887 5688999999999
Q ss_pred CCEEEEEECCC--------------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 592 GDNLIVGSREG--------------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 592 g~~L~sGs~Dg--------------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+.++++|+.++ .+++||+.++ .++..+.+|...|++++|+|++++|++|+.||.|+||++.
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred CceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 99999999988 8999999987 7888999999999999999999999999999999999765
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=297.75 Aligned_cols=274 Identities=14% Similarity=0.177 Sum_probs=233.7
Q ss_pred CcEEEEEEccCCCccEEEE----------EeCCeEEEEECCCCCc----hhcccccceeeeccc-----ccccCCCCcEE
Q 005235 418 EAIQYVAWNPLPELPVLAV----------SVGQDVLILNTGLGNE----EEQRRVKDLLHVETP-----TAPDDNMASIV 478 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~----------s~d~~V~lwd~~~~~~----~~~~~~~~v~~~~~~-----~~~~~~d~~i~ 478 (707)
..|.+++|+|++...++++ +.|+.|++|++.++.. ....+...+.++.|+ +++++.++.++
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999984355565 5788999999987642 223466778888876 78888999999
Q ss_pred EEecCC-----ccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCc------eee--eee-ccCCCeE
Q 005235 479 SWLQHD-----KLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKL------SHR--IPF-KLHGLPV 543 (707)
Q Consensus 479 iW~~~~-----~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~------~~~--~~~-~~~~~V~ 543 (707)
+|+... .....+.+|...|.+++|+|+ +.+|++++.|+ .|++||+.+.. ... ..+ .|...|.
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG---EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS---CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCC---eEEEEECCCCccccccccccccccccCCCCCee
Confidence 999987 233446789999999999998 89999999988 99999999876 321 123 6888999
Q ss_pred EEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCC-CEEEEEECCC---cEEEEECCC
Q 005235 544 SSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAG-DNLIVGSREG---KLCWFDMDL 611 (707)
Q Consensus 544 ~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg-~~L~sGs~Dg---~I~vwDl~~ 611 (707)
+++|+|+ +.+|++++ |+.|++||+.+++.+..+..+ ...|.+++|+|++ .+|++|+.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 78888887 899999999999999998876 6789999999997 6899999999 999999998
Q ss_pred CCcceEEee-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 612 SSKPYRVLK-CHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 612 ~~~~~~~l~-~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
...++..+. +|...|++++|+| ++.+|++++.||+|+||+ +.+.. ++..+.+|... |.+++|+|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd------~~~~~---~~~~~~~~~~~----v~~~~~s~~ 316 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN------PESAE---QLSQFPARGNW----CFKTKFAPE 316 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC------SSSCC---EEEEEECSSSC----CCCEEECTT
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee------CCCCc---cceeecCCCCc----eEEEEECCC
Confidence 767788888 9999999999999 899999999999999994 44443 47888999887 999999999
Q ss_pred C-CEEEEEeCCCcEEEEeC
Q 005235 690 Q-PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 690 g-~~L~s~g~Dg~IrlWdl 707 (707)
+ .+|++++.||.|+||++
T Consensus 317 ~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTL 335 (416)
T ss_dssp CTTEEEECCSSSEEEEEES
T ss_pred CCCEEEEEecCCcEEEEEc
Confidence 9 79999999999999986
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-31 Score=318.50 Aligned_cols=346 Identities=15% Similarity=0.151 Sum_probs=265.4
Q ss_pred CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccc
Q 005235 290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKK 362 (707)
Q Consensus 290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~ 362 (707)
.+.+|.. +|+|+|.+|++... +..+ |.......++.+.++... +..+.|+|++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~~~--- 67 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLY----------SGRVEIWNYETQVEVRSIQVTETP-------VRAGKFIARK--- 67 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSSC-------EEEEEEEGGG---
T ss_pred eeecCCCceEEEEECCCCCEEEEEeC----------CCEEEEEECCCCceEEEEecCCCc-------EEEEEEeCCC---
Confidence 4566765 69999999998554 3333 333444455555444443 4677888765
Q ss_pred eeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCe
Q 005235 363 RVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQD 441 (707)
Q Consensus 363 ~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~ 441 (707)
.++++|+.||+|+||++.+++++..+.. .+.|.+++|+|++. .+++++.++.
T Consensus 68 --------------------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~ 120 (814)
T 3mkq_A 68 --------------------------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLT 120 (814)
T ss_dssp --------------------------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred --------------------------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCE
Confidence 4899999999999999999999999886 88999999999994 7888889999
Q ss_pred EEEEECCCCCc---hhcccccceeeeccc------ccccCCCCcEEEEecCCccceE-Ee-ccCCCeEEEEEcC--CCCE
Q 005235 442 VLILNTGLGNE---EEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RL-RHFKMVSSVEWHR--RGDY 508 (707)
Q Consensus 442 V~lwd~~~~~~---~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~-~h~~~V~~v~~sp--~g~~ 508 (707)
|++|++.++.. .+..+...+.++.|+ +++++.++.|.+|+........ .. .+...+.+++|+| ++.+
T Consensus 121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence 99999987632 344566677777664 7888999999999987654433 33 4558999999999 9999
Q ss_pred EEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEE
Q 005235 509 LSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSI 586 (707)
Q Consensus 509 lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl 586 (707)
|++++.++ .|++|++.++... ..+ .|.+.|.+++|+|++++|++++ ||.|++||+.+++.+..+..+...+.++
T Consensus 201 l~~~~~dg---~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 201 MITASDDL---TIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp EEEECTTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred EEEEeCCC---EEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 99999988 9999999998877 777 7899999999999999999998 8999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEECCCcEEEEECCCCCcc------------------------------------------eEEeecC
Q 005235 587 AIHPAGD--NLIVGSREGKLCWFDMDLSSKP------------------------------------------YRVLKCH 622 (707)
Q Consensus 587 ~~spdg~--~L~sGs~Dg~I~vwDl~~~~~~------------------------------------------~~~l~~h 622 (707)
+|+|+|. ++++| .++.+.+|++...... ...+..+
T Consensus 277 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (814)
T 3mkq_A 277 ATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV 355 (814)
T ss_dssp EECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred EEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence 9999997 35554 4667888887643111 0122334
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
...+++++|+|+|++|++++ ||.+.||+..... . .+... |.+++|+|++.+|++++.+|+|
T Consensus 356 ~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----------~----~~~~~----i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 356 DVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----------N----KAFGK----CQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp SSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE----------E----EEEEE----CSEEEECTTSSCEEEECTTCCE
T ss_pred ccCCceeEECCCCCEEEEec-CCEEEEEECcccc----------c----cCCCc----eEEEEEeCCCCeEEEEeCCCcE
Confidence 55688999999999999998 8999999753110 0 11111 5566666666666666666666
Q ss_pred EEEe
Q 005235 703 RLYC 706 (707)
Q Consensus 703 rlWd 706 (707)
++|+
T Consensus 417 ~l~~ 420 (814)
T 3mkq_A 417 KYYK 420 (814)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6663
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.8e-32 Score=295.79 Aligned_cols=271 Identities=9% Similarity=0.076 Sum_probs=221.8
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee-ccc-----ccccCCCCcEEEEecCCccceEE-e
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV-ETP-----TAPDDNMASIVSWLQHDKLDGIR-L 491 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~-~~~-----~~~~~~d~~i~iW~~~~~~~~~~-~ 491 (707)
.+++++|+|++ ..+++++.++.|++|++.++..........+... .++ +++++.++.+++|+......... .
T Consensus 58 ~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecC-CeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 35578999999 4899999999999999987654322222222222 222 78889999999999987766554 5
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~ 569 (707)
+|...|.+++|+|++++|++++.|+ .|++||+.++... ..+ .|.+.|.+++|+|++.+|++++ |+.|++||+.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDM---QLKIWSVKDGSNP-RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCCC-EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cccCccEEEEECCCCCEEEEEeCCC---eEEEEeCCCCcCc-eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 8999999999999999999999998 9999999998887 778 8999999999999999999998 89999999999
Q ss_pred CeEEEEEeCC---CCCeEE---------------------EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 570 QRLIKKLETG---LKEVSS---------------------IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 570 ~~~~~~l~~~---~~~I~s---------------------l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
++.+..+..+ ...|.+ ++|+|+|.+|++|+.||.|++||+.++.........|...
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 9999988753 333444 4557899999999999999999999885555555668899
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 626 ITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 626 I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
|++++|+|++. +|++|+.||.|+|||+. +... ++..+.+| ... |.++.| +++.+|++++.||+|+
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~------~~~~--~~~~~~~~~~~~----v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLR------SPEC--PVGEFLINEGTP----INNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETT------CTTS--CSEEEEESTTSC----EEEEEE-ETTEEEEEETTTEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcC------CCcC--chhhhhccCCCC----ceEEEe-CCCCEEEEecCCccEE
Confidence 99999999999 99999999999999654 3222 36677774 444 777755 5788999999999999
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
+|++
T Consensus 360 iw~~ 363 (420)
T 3vl1_A 360 LDII 363 (420)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9984
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.8e-31 Score=286.20 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=209.2
Q ss_pred EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235 410 CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 410 ~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
+...+.+.+.|.+++|+|+| .+++++.++.+++|++.++.......... ....+........
T Consensus 57 ~~~~~~h~~~V~~v~fspdg--~~la~g~~~~v~i~~~~~g~~~~~l~~~~----------------~~~~~~~~~~~~~ 118 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDG--EYLATGCNKTTQVYRVSDGSLVARLSDDS----------------AANKDPENLNTSS 118 (393)
T ss_dssp EEEEEECSSCCCEEEECTTS--SEEEEECBSCEEEEETTTCCEEEEECC-------------------------------
T ss_pred eEEecCCCCEEEEEEECCCC--CEEEEEcCCcEEEEEecCCCEEEEecCcc----------------ccccccccccccc
Confidence 34456678999999999999 46666778999999988764321000000 0000000000001
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
...+...|.+++|+|+|++|++++.|+ .|+|||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+
T Consensus 119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 119 SPSSDLYIRSVCFSPDGKFLATGAEDR---LIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCceeEEEEEECCCCCEEEEEcCCC---eEEEEECCCCcEE-EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence 123445699999999999999999998 9999999998877 777 8999999999999999999998 999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEe-------ecCCCCEEEEEEcCCCCEEE
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVL-------KCHPKDITNVAFHRSYPLFA 639 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-------~~h~~~I~~vafspdg~lla 639 (707)
.++++...+.. ...+.+++|+| +|.+|++|+.||.|++||+.++ ..+..+ .+|...|++++|+|++.+|+
T Consensus 195 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 195 RTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp TTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred CCCeeEEEEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 99998888764 47799999999 8999999999999999999877 555555 57999999999999999999
Q ss_pred EEeCCCcEEEEecccccCCCC---CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 640 SCSDDCTAYVFHGMVYSDLNQ---NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 640 Sgs~Dg~I~Vwd~~~~~Dl~~---~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|+.||+|+|||+........ .....+...+.+|... |.+++|+|++.+|++|+.||+|++||+
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF----VLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSC----EEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc----EEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 999999999998753221111 1112346678899987 999999999999999999999999985
No 67
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-30 Score=277.50 Aligned_cols=247 Identities=14% Similarity=0.134 Sum_probs=208.7
Q ss_pred EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235 411 LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI 489 (707)
Q Consensus 411 l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~ 489 (707)
..++.+ .+.|++|+|+|++...|++++.|++|++|++....... ......
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------------~~~~~~ 60 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------------GVPVRS 60 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------EEEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------cccceE
Confidence 345555 88999999999764578899999999999964321100 001123
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL 567 (707)
Q Consensus 490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl 567 (707)
+.+|...|.+++|+|+|.+|++++.|+ +|+|||+.++... ..+ .|.+.|.+++|+|++.+|++++ |++|++||+
T Consensus 61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~---~v~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 61 FKGHSHIVQDCTLTADGAYALSASWDK---TLRLWDVATGETY-QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred EeCCcccEEEEEECCCCCEEEEEeCCC---EEEEEECCCCCee-EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 568999999999999999999999998 9999999999887 778 9999999999999999999998 999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCC------CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPA------GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spd------g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg 641 (707)
. +.++..+.+|...|.+++|+|. +..|++|+.|+.|++||+... .....+.+|...|++++|+|++.+|++|
T Consensus 137 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 137 K-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp T-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred C-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 6 5677888999999999999985 458999999999999999876 6778899999999999999999999999
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.||+|+|||+ .+.. ++..+..+. . |.+++|+|++.+|++++.+ .|++|++
T Consensus 215 ~~dg~i~iwd~------~~~~---~~~~~~~~~-~----v~~~~~sp~~~~la~~~~~-~i~v~~~ 265 (319)
T 3frx_A 215 GKDGEIMLWNL------AAKK---AMYTLSAQD-E----VFSLAFSPNRYWLAAATAT-GIKVFSL 265 (319)
T ss_dssp ETTCEEEEEET------TTTE---EEEEEECCS-C----EEEEEECSSSSEEEEEETT-EEEEEEE
T ss_pred eCCCeEEEEEC------CCCc---EEEEecCCC-c----EEEEEEcCCCCEEEEEcCC-CcEEEEe
Confidence 99999999954 3333 366676654 3 9999999999999988865 5999974
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.9e-31 Score=282.50 Aligned_cols=285 Identities=16% Similarity=0.167 Sum_probs=215.1
Q ss_pred CCCCCCcc-----cc-----CC-CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEE
Q 005235 289 PKLPGHEE-----SY-----NP-SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLY 354 (707)
Q Consensus 289 ~~lpgh~~-----sy-----nP-~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~ 354 (707)
..|.||.. .| +| ++.+|++++ .++.|+....+.... ....+..+ .+|...+.++.
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----~~~~~~~l-------~~h~~~V~~~~ 83 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----FGIPHKAL-------TGHNHFVSDLA 83 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----SEEEEEEE-------CCCSSCEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----cccccchh-------ccCCCceEEEE
Confidence 35778876 35 66 899999954 466676432211000 11122233 33444457777
Q ss_pred EcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccE
Q 005235 355 LCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPV 433 (707)
Q Consensus 355 l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~l 433 (707)
++|+. .++++|+.|++|+|||+.+++++..+.. ...|.+++|+|++ ..|
T Consensus 84 ~~~~~-----------------------------~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l 133 (343)
T 2xzm_R 84 LSQEN-----------------------------CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQI 133 (343)
T ss_dssp ECSST-----------------------------TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEE
T ss_pred ECCCC-----------------------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEE
Confidence 77654 4899999999999999999999998886 8899999999999 478
Q ss_pred EEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-------
Q 005235 434 LAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG------- 506 (707)
Q Consensus 434 la~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g------- 506 (707)
++++.|+.|++||+...... .. .....|...|.+++|+|++
T Consensus 134 ~s~~~d~~i~~wd~~~~~~~---------------------------~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 134 LSAGAEREIKLWNILGECKF---------------------------SS-----AEKENHSDWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp EEEETTSCEEEEESSSCEEE---------------------------EC-----CTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred EEEcCCCEEEEEeccCCcee---------------------------ee-----ecccCCCceeeeeeeccccccccccC
Confidence 88999999999997532100 00 0012688899999999987
Q ss_pred ---CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEeCCC
Q 005235 507 ---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLETGL 580 (707)
Q Consensus 507 ---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~ 580 (707)
.+|++++.|+ .|++||.. .... ..+ .|.+.|.+++|+|++.+|++++ |+.|++||+.. ......+. +.
T Consensus 182 ~~~~~l~s~~~d~---~i~iwd~~-~~~~-~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~ 255 (343)
T 2xzm_R 182 PFAPYFASVGWDG---RLKVWNTN-FQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AG 255 (343)
T ss_dssp SSCCEEEEEETTS---EEEEEETT-TEEE-EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CS
T ss_pred CCCCEEEEEcCCC---EEEEEcCC-Ccee-EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CC
Confidence 7999999998 99999943 3333 566 8999999999999999999998 99999999943 44444443 34
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEee-----------cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVLK-----------CHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l~-----------~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
..|.+++|+|++.+|++| .|+.|++||+.+... .+..+. +|...|++++|+|+|++||+|+.||+|+
T Consensus 256 ~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 256 STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334 (343)
T ss_dssp SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEE
T ss_pred CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEE
Confidence 579999999999888765 577899999986532 122443 6888999999999999999999999999
Q ss_pred EEecc
Q 005235 649 VFHGM 653 (707)
Q Consensus 649 Vwd~~ 653 (707)
+|++.
T Consensus 335 ~w~~~ 339 (343)
T 2xzm_R 335 TFSFE 339 (343)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99654
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.5e-32 Score=300.41 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=206.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
...+|++|+.||+|+|||+.++.....+. +.+.|++|+|+|.....|++++.|++|++||+.+....
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---------- 200 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---------- 200 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE----------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee----------
Confidence 34689999999999999998876544443 37899999999843247888889999999997653110
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
... ....+...+.+++|+++|.+|++|+.|+ .|++||+..... ..+ .|...|
T Consensus 201 ---------------~~~-------~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~~wd~~~~~~--~~~~~h~~~v 253 (435)
T 4e54_B 201 ---------------VFA-------SSDTINIWFCSLDVSASSRMVVTGDNVG---NVILLNMDGKEL--WNLRMHKKKV 253 (435)
T ss_dssp ---------------EEE-------CCSSCSCCCCCEEEETTTTEEEEECSSS---BEEEEESSSCBC--CCSBCCSSCE
T ss_pred ---------------EEe-------ccCCCCccEEEEEECCCCCEEEEEeCCC---cEeeeccCccee--EEEecccceE
Confidence 000 0112345678999999999999999988 999999976443 566 889999
Q ss_pred EEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEE---EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235 543 VSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIK---KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~---~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~ 617 (707)
.+++|+|++. +|++++ |+.|+|||+++.+... ...+|...|++++|+|+|.+|++|+.||.|+|||+.++ ....
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~ 332 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPL 332 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEE
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccce
Confidence 9999999986 566777 8999999998765332 33568889999999999999999999999999999987 4555
Q ss_pred EeecCCC------CEEEEEEcCCCCEEEEEe------------CCCcEEEEecccccCCCCCCcccceEEee-CCCCCCC
Q 005235 618 VLKCHPK------DITNVAFHRSYPLFASCS------------DDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNG 678 (707)
Q Consensus 618 ~l~~h~~------~I~~vafspdg~llaSgs------------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~ 678 (707)
.+..|.. .+..+.|+|++.++++++ .++.|+|| |..++.. +..+. +|...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw------d~~~g~~---~~~l~~~~~~~-- 401 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF------DGNSGKM---MCQLYDPESSG-- 401 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE------CSSSCCE---EEEECCSSCCC--
T ss_pred EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE------ECCCCcE---EEEEeCCCCCc--
Confidence 5655542 234567888887777664 34579999 4445543 44544 56655
Q ss_pred CCeeEE-EEcCCCCEEEEEeCCCcEEEEeC
Q 005235 679 RGVMDC-KFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 679 ~gV~~l-~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.++ +|||+|.+|++|+ |++|+||++
T Consensus 402 --v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 402 --ISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp --CCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred --EEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 8887 6999999999876 889999985
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-30 Score=276.87 Aligned_cols=255 Identities=13% Similarity=0.113 Sum_probs=216.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCc-cEEEEEeCCeEEEEEC-CCCCchhccccccee
Q 005235 389 YLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPEL-PVLAVSVGQDVLILNT-GLGNEEEQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~-~lla~s~d~~V~lwd~-~~~~~~~~~~~~~v~ 462 (707)
.++++|+.||+|+||++.++. ......+...|.+++|+|++ . .|++++.++.|++|++ .++..
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~---------- 92 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF---------- 92 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE----------
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce----------
Confidence 489999999999999999887 55555558999999999998 4 5888888999999997 65421
Q ss_pred eecccccccCCCCcEEEEecCCccceEEec--cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC---------Cce
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK---------KLS 531 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~---------~~~ 531 (707)
..+.. |...|.+++|+| +.+|++++.|+ .|++||+.+ ...
T Consensus 93 -------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 93 -------------------------QALTNNEANLGICRICKYG-DDKLIAASWDG---LIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp -------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTS---EEEEECHHHHTTBCEEEEESC
T ss_pred -------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCC---eEEEEcccccccccccccCCe
Confidence 12346 899999999999 99999999988 999999986 554
Q ss_pred eeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-Ce--EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEE
Q 005235 532 HRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QR--LIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCW 606 (707)
Q Consensus 532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~--~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~v 606 (707)
. ..+.+.+.|.+++|+|++ |++++ ++.|++||+.+ +. .......+...|.+++|+| ++.+|++|+.||.|++
T Consensus 144 ~-~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 220 (342)
T 1yfq_A 144 S-NNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp S-SSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred e-eEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence 4 455788999999999988 66666 89999999988 43 3344556778899999999 9999999999999999
Q ss_pred EECCCC-----CcceEEeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235 607 FDMDLS-----SKPYRVLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG 672 (707)
Q Consensus 607 wDl~~~-----~~~~~~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g 672 (707)
|+++.. ..+...+..|.. .|++++|+|++++|++|+.||.|+|||+ .+.. ++..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~------~~~~---~~~~~~~ 291 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL------QTRK---KIKNFAK 291 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET------TTTE---EEEECCC
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC------ccHh---Hhhhhhc
Confidence 999876 477888988866 9999999999999999999999999954 3333 3778888
Q ss_pred C-CCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 673 H-TSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 673 h-~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
| ... |.+++ |++.+|++++.||+
T Consensus 292 ~h~~~----v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 292 FNEDS----VVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CSSSE----EEEEE--ECSSEEEEEEECTH
T ss_pred ccCCC----ceEec--CCCCeEEEEecCCc
Confidence 8 776 99999 99999999999998
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=290.69 Aligned_cols=298 Identities=14% Similarity=0.197 Sum_probs=216.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe-----------EEEEEec-C------------CcEEEEEEccCCC-ccEEEEEeCCe
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGR-----------CLRVLEI-G------------EAIQYVAWNPLPE-LPVLAVSVGQD 441 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~-----------~l~~l~~-~------------~~V~~v~~spdg~-~~lla~s~d~~ 441 (707)
++.+|++|+.||.|+||++.+++ ++..+.. . +.|.+|+|+|+++ ..+++++.|+.
T Consensus 39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~ 118 (447)
T 3dw8_B 39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118 (447)
T ss_dssp SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence 34599999999999999999887 5667766 4 7899999999973 26899999999
Q ss_pred EEEEECCCCCchhc-----ccccc------eeeecccccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEE
Q 005235 442 VLILNTGLGNEEEQ-----RRVKD------LLHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYL 509 (707)
Q Consensus 442 V~lwd~~~~~~~~~-----~~~~~------v~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~l 509 (707)
|++|++..+..... ..... +....+. .. ...-|......... ..+|...|.+++|+|+|++|
T Consensus 119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP--VF----RPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EEEEEEEEEEEEEECCSCC--------CCCCCSCCCC--EE----EEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred EEEEecccccCCcceecccCccccccCcccccceEec--cc----cchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 99999865422100 00000 0000000 00 00001111111112 35799999999999999999
Q ss_pred EEEeCCCCccEEEEEECCCCceeee-------ee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeE----EEE
Q 005235 510 STVMPAGESRAIFMHQLSKKLSHRI-------PF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRL----IKK 575 (707)
Q Consensus 510 at~s~dg~~~~V~Iwdl~~~~~~~~-------~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~----~~~ 575 (707)
+++ .|+ .|++||+........ .+ .|...|.+++|+|++ .+|++++ |+.|++||+++++. +..
T Consensus 193 ~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 193 LSA-DDL---RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp EEE-CSS---EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred EEe-CCC---eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 998 677 999999984332213 25 788999999999998 8999988 99999999999876 788
Q ss_pred EeCCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC---------------EEE
Q 005235 576 LETGLK------------EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD---------------ITN 628 (707)
Q Consensus 576 l~~~~~------------~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~---------------I~~ 628 (707)
+..|.. .|.+++|+|+|.+|++|+. +.|++||+.....++..+.+|... +..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 347 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE 347 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceE
Confidence 888875 8999999999999999999 999999999744788888888642 334
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-----------------------------CCCC
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-----------------------------SNGR 679 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-----------------------------~~~~ 679 (707)
++|+|++++|++|+.||.|+|||+.. ... ..+.+|.. ....
T Consensus 348 ~~~s~~~~~l~s~s~dg~v~iwd~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (447)
T 3dw8_B 348 CCWNGSDSVVMTGSYNNFFRMFDRNT------KRD----ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK 417 (447)
T ss_dssp EEECTTSSEEEEECSTTEEEEEETTT------CCE----EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred EEECCCCCEEEEeccCCEEEEEEcCC------Ccc----eeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence 99999999999999999999997643 221 12222210 0112
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|.+++|||++.+||+++.++ +.+|.
T Consensus 418 ~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 418 KILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ceeEEEECCCCCEEEEEecce-eeeec
Confidence 389999999999999998876 66664
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=285.35 Aligned_cols=283 Identities=15% Similarity=0.167 Sum_probs=228.9
Q ss_pred eCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccC
Q 005235 395 STDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD 472 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~ 472 (707)
+.+++++||++.+++....+.. .+.|++++|+| ++ ..|++++.|+.|++|++.++..............
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------- 90 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI-------- 90 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE--------
T ss_pred eccCcceeeccccCcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccc--------
Confidence 3456788898888777777765 89999999999 88 4788888999999999887643211100000000
Q ss_pred CCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR 551 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~ 551 (707)
......+|...|.+++|+| ++.+|++++.|+ .|++|++.++... ..+.+...+.++.|+|.+
T Consensus 91 -------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (408)
T 4a11_B 91 -------------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQTA-DVFNFEETVYSHHMSPVS 153 (408)
T ss_dssp -------------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTS---EEEEEETTTTEEE-EEEECSSCEEEEEECSSC
T ss_pred -------------cccccccCCCcEEEEEEccCCCcEEEEEeCCC---eEEEeeCCCCccc-eeccCCCceeeeEeecCC
Confidence 0000125899999999999 788999999988 9999999998876 666888899999999854
Q ss_pred ---CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEe-------
Q 005235 552 ---SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVL------- 619 (707)
Q Consensus 552 ---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l------- 619 (707)
.++++++ ++.|++||+.+++.+..+..|...|.+++|+|++. .|++|+.||.|++||++....++..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 4888888 89999999999999999999999999999999998 58999999999999998876566666
Q ss_pred --------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC------------------------------
Q 005235 620 --------KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN------------------------------ 661 (707)
Q Consensus 620 --------~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~------------------------------ 661 (707)
..|...|++++|+|++.+|++++.||.|++|++.........
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence 578899999999999999999999999999987643211100
Q ss_pred --------CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 662 --------PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 662 --------~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
....++..+.+|... |.+++|+|++++|++++.||.|++|++
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYKT----VDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSSC----EEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CEEEEEECcCCcceeeeccCCCe----EEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 112356778889887 999999999999999999999999985
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=4.3e-30 Score=284.10 Aligned_cols=266 Identities=14% Similarity=0.214 Sum_probs=227.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
++.++++|+.||+|+|||+.+++++..+.. .+.|.+++| ++ ..+++++.|+.|++||+.++..
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~------------- 205 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEM------------- 205 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCE-------------
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcE-------------
Confidence 456999999999999999999999999886 889999999 44 3688899999999999876522
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCe
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLP 542 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V 542 (707)
...+.+|...|.+++|+ +.+|++++.|+ .|++||+.+..... ..+ .|.+.|
T Consensus 206 ---------------------~~~~~~h~~~v~~l~~~--~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 206 ---------------------LNTLIHHCEAVLHLRFN--NGMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp ---------------------EEEECCCCSCEEEEECC--TTEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ---------------------EEEEcCCCCcEEEEEEc--CCEEEEeeCCC---cEEEEeCCCCCCceeeeEecCCCCcE
Confidence 11345789999999997 46999999998 99999998876541 234 888999
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
.+++| ++.+|++++ |+.|++||+.+++++..+.+|...|.+++++ +.+|++|+.||.|++||+.++ .++..+.+
T Consensus 260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~ 334 (435)
T 1p22_A 260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRVLEG 334 (435)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC-CEEEEEeC
Confidence 99999 678899988 8999999999999999999999999999994 789999999999999999987 78899999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV 701 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~ 701 (707)
|...|.+++| ++.+|++|+.||+|+|||+....+........++..+.+|... |.+++| ++.+|++++.||+
T Consensus 335 h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR----VFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC----CCCEEE--CSSCEEECCSSSE
T ss_pred CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC----eEEEEe--CCCEEEEEeCCCE
Confidence 9999999999 7889999999999999987654332222222357889999987 999999 7789999999999
Q ss_pred EEEEeC
Q 005235 702 IRLYCH 707 (707)
Q Consensus 702 IrlWdl 707 (707)
|++||+
T Consensus 407 i~iwd~ 412 (435)
T 1p22_A 407 ILIWDF 412 (435)
T ss_dssp EEEEC-
T ss_pred EEEEEC
Confidence 999985
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.8e-31 Score=282.90 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=199.8
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|++++|+|+| ..|++++.|++|+|||+.++... ....+.+|.+.
T Consensus 13 ~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~--------------------------------~~~~l~gH~~~ 59 (316)
T 3bg1_A 13 EDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQI--------------------------------LIADLRGHEGP 59 (316)
T ss_dssp -CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEE--------------------------------EEEEEECCSSC
T ss_pred cCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcE--------------------------------EEEEEcCCCcc
Confidence 7899999999999 47888899999999997653110 01235689999
Q ss_pred eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235 497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~ 569 (707)
|.+++|++ +|++|++++.|+ +|+|||+.++... ...+ .|.+.|.+++|+|+ +.+|++++ |++|++||+..
T Consensus 60 V~~v~~~~~~~~~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 60 VWQVAWAHPMYGNILASCSYDR---KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp EEEEEECCGGGSSCEEEEETTS---CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred EEEEEeCCCCCCCEEEEEECCC---EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 99999986 489999999998 9999999876422 1456 78999999999998 78899988 99999999987
Q ss_pred Ce---EEEEEeCCCCCeEEEEEcCC-----------------CCEEEEEECCCcEEEEECCCCC--cceEEeecCCCCEE
Q 005235 570 QR---LIKKLETGLKEVSSIAIHPA-----------------GDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKDIT 627 (707)
Q Consensus 570 ~~---~~~~l~~~~~~I~sl~~spd-----------------g~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~ 627 (707)
+. ....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.... .+...+.+|...|+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR 216 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence 53 23445678888999999997 4789999999999999997542 35677899999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 628 NVAFHRSY----PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 628 ~vafspdg----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
+++|+|++ .+||+|+.||+|+||++... ..... ....+.+|... |.+++|+|++++|++++.||+|+
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~---~~~~~--~~~~~~~~~~~----v~~v~~sp~g~~las~~~D~~v~ 287 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA---SSNTW--SPKLLHKFNDV----VWHVSWSITANILAVSGGDNKVT 287 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSST---TCCCC--BCCEEEECSSC----EEEEEECTTTCCEEEEESSSCEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCc---cccch--hhhhhhcCCCc----EEEEEEcCCCCEEEEEcCCCeEE
Confidence 99999987 79999999999999976421 11111 12345677776 99999999999999999999999
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
||++
T Consensus 288 lw~~ 291 (316)
T 3bg1_A 288 LWKE 291 (316)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9973
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=9.1e-30 Score=267.11 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=190.0
Q ss_pred CcEEEEEeCCCcEEEEeCCC--CeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235 388 CYLEYKGSTDGTVRIWEVES--GRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~t--g~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
+.+|++|+.|++|+||++.+ ++++.++.+ .+.|.+|+|+|+ + ..|++++.|++|++|++.++...
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~--------- 90 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWS--------- 90 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBC---------
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceE---------
Confidence 35899999999999999974 467777776 889999999864 5 46888899999999998654210
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCcee-eeee-cc
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KL 538 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~ 538 (707)
....+..|...|.+++|+|+ |.+|++++.|+ .|++|++...... ...+ .|
T Consensus 91 -----------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 91 -----------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp -----------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEEECC
T ss_pred -----------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeeeecc
Confidence 01124578999999999997 89999999998 9999999876422 1445 88
Q ss_pred CCCeEEEEEeCC-------------CCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCC---CEEEE
Q 005235 539 HGLPVSSVFHPT-------------RSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAG---DNLIV 597 (707)
Q Consensus 539 ~~~V~~v~fspd-------------~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg---~~L~s 597 (707)
...|.+++|+|+ +.+|++|+ |++|++||+.++. +...+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 999999999997 46899888 9999999998764 677889999999999999985 89999
Q ss_pred EECCCcEEEEECCCCCcc--eEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 598 GSREGKLCWFDMDLSSKP--YRVL--KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 598 Gs~Dg~I~vwDl~~~~~~--~~~l--~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
|+.|++|++||++....+ ...+ ..|...|.+++|+|++++||+++.||+|+||+.
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 999999999999864321 2334 467889999999999999999999999999964
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-30 Score=274.94 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=205.4
Q ss_pred CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235 408 GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL 486 (707)
Q Consensus 408 g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~ 486 (707)
|+++..+.+ .+.|++++|+|++. .|++++.|+.|+||++..... ..
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~--------------------------------~~ 47 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETH--------------------------------KL 47 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEE--------------------------------EE
T ss_pred CCccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcc--------------------------------ee
Confidence 344555655 88999999999994 677788899999999753211 01
Q ss_pred ceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCc--eeeeee-ccCCCeEEEEEeCC--CCEEEEEe-
Q 005235 487 DGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKL--SHRIPF-KLHGLPVSSVFHPT--RSIFFVST- 558 (707)
Q Consensus 487 ~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~--~~~~~~-~~~~~V~~v~fspd--~~~l~v~s- 558 (707)
...+.+|...|.+++|+++ +.+|++++.|+ .|++||+.++. .. ..+ .+...|.+++|+|+ +.+|++++
T Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred eeEecCCCCcEEEEEeCCCCCCCEEEEeccCC---EEEEEEcCCCceeEe-eeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 1235579999999999977 99999999998 99999999886 33 455 78899999999999 89999988
Q ss_pred CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcC-------------CCCEEEEEECCCcEEEEECCCCC---cceEEee
Q 005235 559 KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHP-------------AGDNLIVGSREGKLCWFDMDLSS---KPYRVLK 620 (707)
Q Consensus 559 dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~sp-------------dg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~ 620 (707)
|+.|++||+.++ .....+..|...|.+++|+| ++.+|++|+.||.|++||+..+. .+...+.
T Consensus 124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 999999999886 34556778989999999999 69999999999999999998763 2456778
Q ss_pred cCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 621 CHPKDITNVAFHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 621 ~h~~~I~~vafspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
+|...|++++|+|+ +.+|++++.||.|+||++.... ......+.....|... |.+++|+|++.+|++++
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ----GPWKKTLLKEEKFPDV----LWRASWSLSGNVLALSG 275 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT----SCCEEEESSSSCCSSC----EEEEEECSSSCCEEEEE
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC----ccceeeeeccccCCCc----EEEEEEcCCCCEEEEec
Confidence 89999999999999 8999999999999999764221 1111112222346665 99999999999999999
Q ss_pred CCCcEEEEeC
Q 005235 698 ADSVIRLYCH 707 (707)
Q Consensus 698 ~Dg~IrlWdl 707 (707)
.||.|++|++
T Consensus 276 ~dg~i~iw~~ 285 (379)
T 3jrp_A 276 GDNKVTLWKE 285 (379)
T ss_dssp SSSSEEEEEE
T ss_pred CCCcEEEEeC
Confidence 9999999984
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=266.21 Aligned_cols=298 Identities=14% Similarity=0.101 Sum_probs=208.4
Q ss_pred ccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec
Q 005235 341 NAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI 416 (707)
Q Consensus 341 ~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~ 416 (707)
.++.+|...+..+.|+|+. .+|++|+.||+|+||++.++ +++..+..
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-----------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 55 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-----------------------------RHVATCSSDQHIKVFKLDKDTSNWELSDSWRA 55 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-----------------------------SEEEEEETTSEEEEEEECSSSCCEEEEEEEEC
T ss_pred ccCcccccceeEEEEcCCC-----------------------------CEEEEeeCCCeEEEEECCCCCCcceecceecc
Confidence 3455666666888888654 48999999999999999876 46666665
Q ss_pred -CCcEEEEEEcc--CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235 417 -GEAIQYVAWNP--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH 493 (707)
Q Consensus 417 -~~~V~~v~~sp--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h 493 (707)
...|.+++|+| ++ ..|++++.|+.|++|++..+........ | .....+..|
T Consensus 56 ~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------------------~----~~~~~~~~~ 109 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRR---------------------W----NKLCTLNDS 109 (351)
T ss_dssp CSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCS---------------------E----EEEEEECCC
T ss_pred CCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccC---------------------c----ceeeeeccc
Confidence 88999999999 46 4788888999999999877633210000 0 011235578
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee--------------ccCCCeEEEEEeCC---CCEE
Q 005235 494 FKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--------------KLHGLPVSSVFHPT---RSIF 554 (707)
Q Consensus 494 ~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------------~~~~~V~~v~fspd---~~~l 554 (707)
...|.+++|+|+ +.+|++++.|+ .|++||+.+.... ..+ .+...+.+++|+|+ +.+|
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDG---ILRLYDALEPSDL-RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTC---EEEEEECSSTTCT-TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCC---cEEEecCCChHHh-ccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 999999999999 99999999998 9999999877643 211 46778999999997 8899
Q ss_pred EEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCC----CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235 555 FVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAG----DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627 (707)
Q Consensus 555 ~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg----~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~ 627 (707)
++++ ++.+.+|+...++. +..+.+|...|++++|+|++ .+|++|+.||.|++||+..+.. ......+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 264 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-PLASEESLTNSN 264 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------
T ss_pred EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC-ccccCCccccee
Confidence 9988 88888888777754 67788899999999999998 8999999999999999987633 223333444455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
...+++....++++..++....+. .+.......++..+.+|... |++++|+|++++|++++.||.|+||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKA-----ELQSNLQVELLSEHDDHNGE----VWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSC----EEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ccCCCcccccccccccccccceee-----eecccccccEEEEEeccccc----EEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 555555555555555443222110 12222333457888999887 999999999999999999999999984
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=4.6e-30 Score=271.98 Aligned_cols=228 Identities=18% Similarity=0.166 Sum_probs=189.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.+|++|+.|++|+|||+.++. ++..+.+ .+.|.+|+|+|+ + ..|++++.|++|++||+.++...
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~---------- 94 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWE---------- 94 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCC----------
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcce----------
Confidence 489999999999999998875 4566665 789999999863 5 47889999999999997654210
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCcee--eeee-cc
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KL 538 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~ 538 (707)
....+.+|...|.+++|+|+ |.+|++++.|+ .|++|++...... ...+ .|
T Consensus 95 ----------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 95 ----------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---AISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp ----------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSS---CEEEEEECSSSCEEECCBTTSS
T ss_pred ----------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCC---CEEEEecCCCCCcceeeeeccc
Confidence 01124579999999999997 88999999998 9999999876321 1334 78
Q ss_pred CCCeEEEEEeCC-----------------CCEEEEEe-CCeEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCC----C
Q 005235 539 HGLPVSSVFHPT-----------------RSIFFVST-KKNIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAG----D 593 (707)
Q Consensus 539 ~~~V~~v~fspd-----------------~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg----~ 593 (707)
...|.+++|+|+ +.+|++++ |++|++||+..+ +++..+.+|..+|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 889999999997 36788888 999999999754 5677888999999999999987 8
Q ss_pred EEEEEECCCcEEEEECCCC---CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 594 NLIVGSREGKLCWFDMDLS---SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 594 ~L~sGs~Dg~I~vwDl~~~---~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+|++|+.|++|++||+... ......+..|...|.+++|+|++++||+|+.||+|+||+.
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 9999999999999999762 1223456778999999999999999999999999999964
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.6e-29 Score=277.16 Aligned_cols=302 Identities=15% Similarity=0.168 Sum_probs=249.7
Q ss_pred CCCCCcc----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccce
Q 005235 290 KLPGHEE----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKR 363 (707)
Q Consensus 290 ~lpgh~~----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~ 363 (707)
.+.||.. +++++|.+|++++. |..+ |.......++.+.++...| ..+.+++
T Consensus 113 ~l~~h~~~v~~~~~~~g~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~~v-------~~~~~~~------ 169 (445)
T 2ovr_B 113 VLKGHDDHVITCLQFCGNRIVSGSD----------DNTLKVWSAVTGKCLRTLVGHTGGV-------WSSQMRD------ 169 (445)
T ss_dssp EEECSTTSCEEEEEEETTEEEEEET----------TSCEEEEETTTCCEEEECCCCSSCE-------EEEEEET------
T ss_pred EecccCCCcEEEEEEcCCEEEEEEC----------CCcEEEEECCCCcEEEEEcCCCCCE-------EEEEecC------
Confidence 5677765 47788999998655 4444 4445556666666555544 4444431
Q ss_pred eecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeE
Q 005235 364 VNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDV 442 (707)
Q Consensus 364 lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V 442 (707)
.++++|+.||+|++||+.+++++..+.. ...|.+++|+++ .+++++.|+.|
T Consensus 170 -------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i 221 (445)
T 2ovr_B 170 -------------------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATL 221 (445)
T ss_dssp -------------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEE
T ss_pred -------------------------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC---EEEEEeCCCEE
Confidence 3899999999999999999999999886 789999999754 59999999999
Q ss_pred EEEECCCCCc--hhcccccceeeeccc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 005235 443 LILNTGLGNE--EEQRRVKDLLHVETP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAG 516 (707)
Q Consensus 443 ~lwd~~~~~~--~~~~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg 516 (707)
++||+.++.. .+..+...+.++.+. +++++.++.+.+|+....... .+.+|...|.+++| ++.+|++++.|+
T Consensus 222 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 9999988764 344566667666665 788999999999998866543 36679999999999 889999999998
Q ss_pred CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCC
Q 005235 517 ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPA 591 (707)
Q Consensus 517 ~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spd 591 (707)
.|++||+.++... ..+ .+...+.++.++ +.+|++++ |+.|++||+.+++.+..+.. |...|.+++|+
T Consensus 300 ---~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 300 ---SIRVWDVETGNCI-HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371 (445)
T ss_dssp ---CEEEEETTTCCEE-EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred ---eEEEEECCCCCEE-EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence 9999999999887 777 888889888875 56888888 99999999999999999986 77889999996
Q ss_pred CCEEEEEECCCcEEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecc
Q 005235 592 GDNLIVGSREGKLCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYPLFASCSDDCT----AYVFHGM 653 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~llaSgs~Dg~----I~Vwd~~ 653 (707)
+.+|++|+.||.|++||+.++ +.+..+ ..|...|++++|+|++.+||+|+.||+ |.|||+.
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC-ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 689999999999999999987 667777 478899999999999999999999998 9999653
No 80
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-30 Score=275.92 Aligned_cols=266 Identities=10% Similarity=0.052 Sum_probs=212.1
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
.+..++++|+.||+|+|||+.+++++..+. ...|.++.|+|+ +++++.|++|++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~----------------- 103 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPG----------------- 103 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETT-----------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEcc-----------------
Confidence 455789999999999999999999988887 466788888887 8999999999999964
Q ss_pred ccccccCCCCcEEEEecCCccceE--EeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccC
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH 539 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~ 539 (707)
+.+.+|+........ ..+|...|.+++|+| ++++|++++.|+ .|++||+.++... ..+ .+.
T Consensus 104 ---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~-~~~~~~~~ 170 (343)
T 3lrv_A 104 ---------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQY-IVHSAKSD 170 (343)
T ss_dssp ---------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC---CEEEEESSSSCEE-EEECCCSS
T ss_pred ---------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC---cEEEEECCCCcEE-EEEecCCC
Confidence 356778777655322 447778999999999 999999999998 9999999998875 444 556
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-EEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-KKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
..+.+++|+|++.+|++|+ |+.|++||+++++.+ ..+.. |...|++++|+|+|.+|++|+ ++.|++||++.. .+.
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~ 248 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGT 248 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTC
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-Ccc
Confidence 6899999999999999988 999999999998877 77887 899999999999999999999 559999999976 443
Q ss_pred EEeec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC--
Q 005235 617 RVLKC---HPKDIT--NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-- 688 (707)
Q Consensus 617 ~~l~~---h~~~I~--~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-- 688 (707)
..+.. |...+. +++|+|++++|++++. |+.|+||++.. ... .... .. +..++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~------~~~---~~~~----~~----~~~~~~~~~~ 311 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK------KTK---NWTK----DE----ESALCLQSDT 311 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT------TTC---SEEE----EE----EEECCC----
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc------ccc---ceEe----cC----ceeEecCccc
Confidence 33332 444444 6999999999999998 99999996532 111 0111 12 67788888
Q ss_pred -CCCEEEEEeCCCcEEEE
Q 005235 689 -RQPWLFTAGADSVIRLY 705 (707)
Q Consensus 689 -dg~~L~s~g~Dg~IrlW 705 (707)
+...|++++.||.++++
T Consensus 312 ~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCCCEEEEEEETTEEEEE
T ss_pred cccceeEEEecCCceEEE
Confidence 78888888888888876
No 81
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.1e-29 Score=265.49 Aligned_cols=262 Identities=16% Similarity=0.196 Sum_probs=212.0
Q ss_pred cEEEEEeCCCcEEEEeCCC-CeEE-EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 389 YLEYKGSTDGTVRIWEVES-GRCL-RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~t-g~~l-~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
.++++|+.||+|+||++.+ +..+ ..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++..
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~------------- 120 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQA------------- 120 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE-------------
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCc-------------
Confidence 5899999999999999997 6655 55554 8899999999999 4788888999999999876421
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE--cCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW--HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV 543 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~--sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~ 543 (707)
.....|...|.+++| ++++.+|++++.|+ .|++||+.++... ..+.....+.
T Consensus 121 ----------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~-~~~~~~~~~~ 174 (368)
T 3mmy_A 121 ----------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK---TLKFWDTRSSNPM-MVLQLPERCY 174 (368)
T ss_dssp ----------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTS---EEEEECSSCSSCS-EEEECSSCEE
T ss_pred ----------------------eeeccccCceEEEEEEeCCCCCEEEEccCCC---cEEEEECCCCcEE-EEEecCCCce
Confidence 124579999999999 89999999999998 9999999998876 6775556777
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCE----EEEEECCCcEEEEECCCCC--c
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDN----LIVGSREGKLCWFDMDLSS--K 614 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~----L~sGs~Dg~I~vwDl~~~~--~ 614 (707)
++.+.+ ..+++++ ++.+++|++.......... .....+.++++.+++.. +++|+.||.|++||++... .
T Consensus 175 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred EEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 777775 4666666 8999999998764433322 23345677777666554 9999999999999998753 4
Q ss_pred ceEEeecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235 615 PYRVLKCHPK------------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM 682 (707)
Q Consensus 615 ~~~~l~~h~~------------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~ 682 (707)
+...+.+|.. .|++++|+|++.+|++|+.||.|+|||+ .+.. ++..+.+|... |.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~------~~~~---~~~~~~~~~~~----v~ 319 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK------DART---KLKTSEQLDQP----IS 319 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET------TTTE---EEEECCCCSSC----EE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC------CCCc---EEEEecCCCCC----ce
Confidence 5677888876 7999999999999999999999999954 3333 47888899887 99
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE
Q 005235 683 DCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 683 ~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+++|+|++.+|++++.|+..+.|
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCG
T ss_pred EEEECCCCCeEEEEecccccccc
Confidence 99999999999999998865443
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.6e-29 Score=273.92 Aligned_cols=229 Identities=17% Similarity=0.222 Sum_probs=196.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeE-----EEEEecC------CcEEEEEEc----cCCCcc-EEEEEeCCeEEEEECCC---
Q 005235 389 YLEYKGSTDGTVRIWEVESGRC-----LRVLEIG------EAIQYVAWN----PLPELP-VLAVSVGQDVLILNTGL--- 449 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~-----l~~l~~~------~~V~~v~~s----pdg~~~-lla~s~d~~V~lwd~~~--- 449 (707)
.++++|+.||+|++|++.++++ +..+... ..|.+++|+ |++. . |++++.++.|++|++..
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCcccc
Confidence 4899999999999999998886 7777663 899999999 9984 6 88888999999999876
Q ss_pred ---CCchhcccccceeeecccccccCCCCcEEEEecCCccceEE-------eccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235 450 ---GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR-------LRHFKMVSSVEWHRRGDYLSTVMPAGESR 519 (707)
Q Consensus 450 ---~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~-------~~h~~~V~~v~~sp~g~~lat~s~dg~~~ 519 (707)
+.... |. ....+ ..|...|.+++|+|++ +|++++.++
T Consensus 161 ~~~~~~~~-------------------------~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg--- 207 (397)
T 1sq9_A 161 ESNSLTLN-------------------------WS----PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG--- 207 (397)
T ss_dssp HHHHTTTC-------------------------CC----CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS---
T ss_pred ccccceee-------------------------cc----CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC---
Confidence 21110 00 00011 3578899999999999 999999988
Q ss_pred EEEEEECCCCceeeeee-c---c---CCCeEEEEEeCCCCEEEEEe-C---CeEEEEECCCCeEEEEEeC----------
Q 005235 520 AIFMHQLSKKLSHRIPF-K---L---HGLPVSSVFHPTRSIFFVST-K---KNIRVYDLLKQRLIKKLET---------- 578 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~-~---~---~~~V~~v~fspd~~~l~v~s-d---g~I~iwDl~~~~~~~~l~~---------- 578 (707)
.|++||+.+.... ..+ . | ...|.+++|+|++.+|++++ | +.|++||+.+++.+..+..
T Consensus 208 ~i~i~d~~~~~~~-~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 208 TVQISELSTLRPL-YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp EEEEEETTTTEEE-EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred cEEEEECCCCcee-EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 9999999988776 777 6 7 89999999999999999988 7 9999999999999999988
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee------cC---------------CCCEEEEEEcCC
Q 005235 579 ---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK------CH---------------PKDITNVAFHRS 634 (707)
Q Consensus 579 ---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~------~h---------------~~~I~~vafspd 634 (707)
|...|.+++|+|++.+|++|+.||.|++||+.++ +++..+. +| ...|++++|+|+
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 8899999999999999999999999999999887 7888898 88 999999999999
Q ss_pred C----------CEEEEEeCCCcEEEEecc
Q 005235 635 Y----------PLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 635 g----------~llaSgs~Dg~I~Vwd~~ 653 (707)
+ ++|++|+.||.|+||++.
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccccccceEEEecCCCcEEEEEcC
Confidence 8 799999999999999653
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5.8e-30 Score=279.69 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=217.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeE----EEEEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRC----LRVLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~----l~~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
..++++|+.||.|+||++.+... +..+.. .+.|.+++|+| ++ ..|++++.|+.|++|++.++.....
T Consensus 47 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~------ 119 (402)
T 2aq5_A 47 MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLP------ 119 (402)
T ss_dssp EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSC------
T ss_pred EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccc------
Confidence 34666789999999999965432 223333 78999999999 66 4788888899999999877532100
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee---c
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF---K 537 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~ 537 (707)
.......+.+|...|.+++|+|++ .+|++++.|+ .|+|||+.++... ..+ .
T Consensus 120 ---------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~-~~~~~~~ 174 (402)
T 2aq5_A 120 ---------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVGTGAAV-LTLGPDV 174 (402)
T ss_dssp ---------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETTTTEEE-EEECTTT
T ss_pred ---------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECCCCCcc-EEEecCC
Confidence 001122456899999999999998 6999999988 9999999998776 555 5
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCCCC-eEEEEEcCCCCEEEEE---ECCCcEEEEECCC
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGLKE-VSSIAIHPAGDNLIVG---SREGKLCWFDMDL 611 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~~~-I~sl~~spdg~~L~sG---s~Dg~I~vwDl~~ 611 (707)
|.+.|.+++|+|++.+|++++ |+.|++||+++++.+..+ ..|... +.+++|+|+|.+|++| +.|+.|++||+..
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 888999999999999999998 999999999999999988 677665 8999999999999999 7899999999998
Q ss_pred CCcceEEee-cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCCCCCeeEEEEc
Q 005235 612 SSKPYRVLK-CHPKDITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSNGRGVMDCKFH 687 (707)
Q Consensus 612 ~~~~~~~l~-~h~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~~~gV~~l~fs 687 (707)
...++.... .|...|.+++|+|++.+|+ +|+.||.|++|++. +... .+..+..| ... |.+++|+
T Consensus 255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~------~~~~--~~~~l~~~~~~~~----v~~~~~s 322 (402)
T 2aq5_A 255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT------SEAP--FLHYLSMFSSKES----QRGMGYM 322 (402)
T ss_dssp CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC------SSTT--CEEEEEEECCSSC----CSEEEEC
T ss_pred ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec------CCCc--ceEeecccccCCc----ccceEEe
Confidence 755555544 5778899999999999886 45579999999653 3321 13344443 354 9999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 005235 688 PRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 688 pdg~~L~s~g~Dg~IrlWdl 707 (707)
|++.++++ .++.+++|++
T Consensus 323 p~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 323 PKRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp CGGGSCGG--GTEEEEEEEE
T ss_pred ccccccee--cceeEEEEEc
Confidence 99998875 5679999984
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.5e-29 Score=275.95 Aligned_cols=266 Identities=15% Similarity=0.223 Sum_probs=211.9
Q ss_pred EEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235 411 LRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR 490 (707)
Q Consensus 411 l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~ 490 (707)
...+.+.+.|++++|+|++...+++++.++.|++|++........ ..+ .......+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~-------~~~~~~~~ 177 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSG-------ECQPDLRL 177 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTC-------CCCCSEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccc-------cCCCcEEe
Confidence 344555899999999998434666777899999999865311100 000 01112245
Q ss_pred eccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCcee------eeee-ccCCCeEEEEEeC-CCCEEEEEe-CC
Q 005235 491 LRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSH------RIPF-KLHGLPVSSVFHP-TRSIFFVST-KK 560 (707)
Q Consensus 491 ~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~------~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg 560 (707)
.+|...|.+++|+|++. +|++++.|| .|++|++...... ...+ .|.+.|.+++|+| ++.+|++++ ++
T Consensus 178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 178 RGHQKEGYGLSWNPNLNGYLLSASDDH---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp ECCSSCCCCEEECTTSTTEEEEECTTS---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCC---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 68999999999999998 999999988 9999999874321 1345 7889999999999 677888887 89
Q ss_pred eEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235 561 NIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 561 ~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ 636 (707)
.|++||++++ +.+..+..|...|++++|+|++. +|++|+.||.|++||++....++..+..|...|++++|+|+++
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence 9999999986 57778889999999999999997 6899999999999999986678999999999999999999985
Q ss_pred -EEEEEeCCCcEEEEecccccCCCC-----CCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235 637 -LFASCSDDCTAYVFHGMVYSDLNQ-----NPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH 707 (707)
Q Consensus 637 -llaSgs~Dg~I~Vwd~~~~~Dl~~-----~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl 707 (707)
+|++++.||.|+||++........ ......+..+.+|... |.+++|+|+++ +|++++.||.|+||++
T Consensus 335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC----EEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC----ceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 799999999999998764221110 0001346778889887 99999999999 8899999999999984
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=271.80 Aligned_cols=299 Identities=12% Similarity=0.137 Sum_probs=206.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEe--------------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLE--------------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~--------------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~ 454 (707)
.++++|+.||+|+||++.++.....+. +...|.+++|+|++...+++++.++.|++|++.++....
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD 136 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence 599999999999999999887655544 578999999999543578888889999999998875421
Q ss_pred -cccccceeeeccc--------ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEE
Q 005235 455 -QRRVKDLLHVETP--------TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFM 523 (707)
Q Consensus 455 -~~~~~~v~~~~~~--------~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~I 523 (707)
......+..+.+. +++++.++.+.+|++...... .+..|...|.+++|+|++. .|++++.|+ .|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg---~i~i 213 (408)
T 4a11_B 137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS---RVKL 213 (408)
T ss_dssp EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS---CEEE
T ss_pred eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC---cEEE
Confidence 1223333333332 677889999999999866543 4667999999999999999 588999988 9999
Q ss_pred EECCCCceeeee---------------e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-----C
Q 005235 524 HQLSKKLSHRIP---------------F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-----K 581 (707)
Q Consensus 524 wdl~~~~~~~~~---------------~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-----~ 581 (707)
||+......... + .+.+.|.+++|+|++.+|++++ |+.|++||+.+++....+..+. .
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence 999876421111 1 5778899999999999999998 8999999999886654433221 1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235 582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~ 661 (707)
.+........+..+++++.++.|++||+.++ .++..+.+|...|++++|+|++++|++|+.||.|+||++....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----- 367 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE----- 367 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC-----
Confidence 1222222344567777788999999999987 7889999999999999999999999999999999999664332
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~IrlWdl 707 (707)
. +.....+. ....+.| ....+.+++.|+.+++|+.
T Consensus 368 -~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 368 -P---VPDDDETT-------TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp -----------------------------------------------
T ss_pred -c---cCCCCceE-------eccccccccceeecccCccCceeecCC
Confidence 1 22222221 1122333 2234456778999999973
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-30 Score=282.46 Aligned_cols=277 Identities=15% Similarity=0.119 Sum_probs=214.2
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVL-EI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQR 456 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l-~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~ 456 (707)
....|...+..+++++ +|+ .+|+++..+ .+ .+.|++|+|+| ++ ..|++++.|+.|+||++.+.....
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~-- 100 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE-- 100 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC--
T ss_pred chhhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc--
Confidence 3334555666665544 488 578889888 55 69999999999 88 478888999999999975410000
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC---CCceee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS---KKLSHR 533 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~---~~~~~~ 533 (707)
.........|...|.+++|+|++.+|++++.|+ .|++||+. .+....
T Consensus 101 ---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~ 150 (437)
T 3gre_A 101 ---------------------------VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG---QIIVLKVNHYQQESEVK 150 (437)
T ss_dssp ---------------------------CCSCSEEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEEEEEEEETTEEE
T ss_pred ---------------------------ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEEeccccCCceee
Confidence 000012336899999999999999999999998 99999994 333320
Q ss_pred -------eee---c--cCCCeEEEE--EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEE
Q 005235 534 -------IPF---K--LHGLPVSSV--FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLI 596 (707)
Q Consensus 534 -------~~~---~--~~~~V~~v~--fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~ 596 (707)
..+ . +...+.++. +++++.+|++++ |+.|++||+.+++++..+.. |...|++++|+|++.+|+
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 230 (437)
T 3gre_A 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI 230 (437)
T ss_dssp EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE
T ss_pred ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE
Confidence 111 1 566777777 568899999998 89999999999999999998 788999999999999999
Q ss_pred EEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235 597 VGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHR----SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR 671 (707)
Q Consensus 597 sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafsp----dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~ 671 (707)
+|+.||.|++||++++ .++..+. .|...|++++|+| ++.+|++|+.||+|+|||+. +... +..+.
T Consensus 231 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~------~~~~---~~~~~ 300 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV------KGHC---QYAFI 300 (437)
T ss_dssp EEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT------TTEE---EEEEE
T ss_pred EEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC------CCcE---EEEEE
Confidence 9999999999999986 7788776 7888999996665 57799999999999999654 2222 33444
Q ss_pred CCCCC----------------------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 672 GHTSS----------------------NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 672 gh~~~----------------------~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+|... +...|.+++|+ ++.+|++|+.||.|++||+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 33210 11239999999 7799999999999999985
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.1e-29 Score=268.35 Aligned_cols=259 Identities=11% Similarity=0.071 Sum_probs=198.8
Q ss_pred CCcEEEEEeCCC-------cEEEEeCCCCe--------EEEEEec---CCcEEEEEEccCCCccEEEEE-----------
Q 005235 387 ACYLEYKGSTDG-------TVRIWEVESGR--------CLRVLEI---GEAIQYVAWNPLPELPVLAVS----------- 437 (707)
Q Consensus 387 ~~~~l~sgs~Dg-------tVrIWd~~tg~--------~l~~l~~---~~~V~~v~~spdg~~~lla~s----------- 437 (707)
++.+|++||.|. .|+||++..+. ....+.. ...|.+++++++ .+++++
T Consensus 25 dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~ 101 (365)
T 4h5i_A 25 NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILVGCNENSTKITQGK 101 (365)
T ss_dssp TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTS
T ss_pred CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEEEECCCccEEEEec
Confidence 345899987654 49999987653 2222222 567888877654 255443
Q ss_pred eCCeEEEEECCCCCchhc-----------ccccceeeeccc-------ccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235 438 VGQDVLILNTGLGNEEEQ-----------RRVKDLLHVETP-------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS 499 (707)
Q Consensus 438 ~d~~V~lwd~~~~~~~~~-----------~~~~~v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~ 499 (707)
.++.+++|++......+. .....+..++|+ +++++.+++|++|+..+........|.+.|.+
T Consensus 102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~ 181 (365)
T 4h5i_A 102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKD 181 (365)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCE
T ss_pred CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEE
Confidence 467899999876533111 111223345554 34667899999999998877666779999999
Q ss_pred EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee-e-ccCCCeEEEEEeCCCCEEEEEe-CC----eEEEEECCCCeE
Q 005235 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-KLHGLPVSSVFHPTRSIFFVST-KK----NIRVYDLLKQRL 572 (707)
Q Consensus 500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~~~~~V~~v~fspd~~~l~v~s-dg----~I~iwDl~~~~~ 572 (707)
|+|+|+|++|++++.+ .+.+|+..++...... . .+...|.+++|+|++.++++++ ++ .+++|++.....
T Consensus 182 v~fspdg~~l~s~s~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGS----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp EEECTTSSEEEEECSS----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred EEEccCCceEEeccce----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 9999999999999865 4666666666554222 3 6788899999999999999987 65 688999876543
Q ss_pred ----EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235 573 ----IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV-LKCHPKDITNVAFHRSYPLFASCSDDCTA 647 (707)
Q Consensus 573 ----~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~-l~~h~~~I~~vafspdg~llaSgs~Dg~I 647 (707)
...+.+|...|++++|+|+|++||+|+.|+.|+|||+.++ +++.. +.+|...|++|+|||+|++|||||.|++|
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tv 336 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTI 336 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeE
Confidence 4567789899999999999999999999999999999987 66766 57999999999999999999999999999
Q ss_pred EEEecc
Q 005235 648 YVFHGM 653 (707)
Q Consensus 648 ~Vwd~~ 653 (707)
+||++.
T Consensus 337 rvw~ip 342 (365)
T 4h5i_A 337 HIIKLP 342 (365)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999763
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-30 Score=290.72 Aligned_cols=267 Identities=10% Similarity=0.075 Sum_probs=202.3
Q ss_pred CCeEEEEEecCCcEEEEEEccCCC--------ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235 407 SGRCLRVLEIGEAIQYVAWNPLPE--------LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV 478 (707)
Q Consensus 407 tg~~l~~l~~~~~V~~v~~spdg~--------~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~ 478 (707)
++++...+...+.|.+|+|+|++. ..|++++.++.. +.. .. ..-.+++++.+++|+
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---~~~----------~~---~~~~laS~s~D~tI~ 186 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---EPL----------NE---HLEMFDKEKHSSCIQ 186 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------CEEEE
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---Ccc----------ch---hhhhhccCCCCceEE
Confidence 456666777789999999999861 244444444321 000 00 000146778899999
Q ss_pred EEecCCccce-----EEeccCCCeEEEEEcCC------CCEEEEEeCCCCccEEEEEECCCCcee----------eeee-
Q 005235 479 SWLQHDKLDG-----IRLRHFKMVSSVEWHRR------GDYLSTVMPAGESRAIFMHQLSKKLSH----------RIPF- 536 (707)
Q Consensus 479 iW~~~~~~~~-----~~~~h~~~V~~v~~sp~------g~~lat~s~dg~~~~V~Iwdl~~~~~~----------~~~~- 536 (707)
+|++.+.... .+.+|.+.|.+|+|+|+ +.+||+++.|+ +|+||++..+... ...+
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg---tvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG---TINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS---CEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC---eEEEEEcCCCccccccceeecCceEEEE
Confidence 9998765432 24567899999999996 57999999998 9999999876421 0245
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEE--EEcCCC-CEEEEEECCCcEEEEECCC
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSI--AIHPAG-DNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl--~~spdg-~~L~sGs~Dg~I~vwDl~~ 611 (707)
.|.+.|.+++|+|++ .|++|+ ||+|++||+.++ .+...+.+|...|.+| +|+|+| .+||+||.|++|+|||+++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 788999999999865 788888 999999999876 4556788999999999 578888 8999999999999999987
Q ss_pred CCcceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235 612 SSKPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 612 ~~~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd 689 (707)
+ ++..++.+|.. .|.+|+|+|+++.|++++.|++|+||+++ ... ++..+.+|... |++|+|+|+
T Consensus 343 ~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~------~~~---~~~~l~gH~~~----V~sva~Sp~ 408 (524)
T 2j04_B 343 I-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR------AAF---AVHPLVSRETT----ITAIGVSRL 408 (524)
T ss_dssp H-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT------CTT---CCEEEEECSSC----EEEEECCSS
T ss_pred C-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc------ccc---cceeeecCCCc----eEEEEeCCC
Confidence 6 55666777753 58899999999999999999999999654 333 25678899987 999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 005235 690 QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 690 g~~L~s~g~Dg~IrlWdl 707 (707)
+++|+||+.||+|+||++
T Consensus 409 g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CCBCEEEETTTEEECCBS
T ss_pred CCeEEEEECCCEEEEEec
Confidence 999999999999999984
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.1e-28 Score=287.20 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=204.6
Q ss_pred EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235 413 VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL 491 (707)
Q Consensus 413 ~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~ 491 (707)
.+.. .+.|++|+|+|++...|++++.|++|++|++....... ......+.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-----------------------------~~~~~~~~ 427 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-----------------------------GVAQRRLT 427 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-----------------------------CEEEEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-----------------------------ccccceec
Confidence 4544 88999999999875568888999999999986542110 00112366
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK 569 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~ 569 (707)
+|...|.+++|+|+|++|++++.|+ .|+|||+.++... ..+ .|.+.|.+++|+|++.+|++++ |++|++||+..
T Consensus 428 ~h~~~v~~v~~s~~g~~l~sgs~Dg---~v~vwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQFALSGSWDG---ELRLWDLAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCC---cEEEEECCCCcce-eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence 8999999999999999999999998 9999999999887 777 9999999999999999999998 99999999875
Q ss_pred CeEEEEE---eCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235 570 QRLIKKL---ETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644 (707)
Q Consensus 570 ~~~~~~l---~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D 644 (707)
....... .+|...|.+++|+|++ ..|++|+.|+.|++||+... ++...+.+|...|++++|+|++.+|++|+.|
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 5433322 3577889999999987 68999999999999999876 7788999999999999999999999999999
Q ss_pred CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+|+|||+ .+... +..+..+. . |.+++|+|++.+|++++ |+.|+|||+
T Consensus 583 g~i~iwd~------~~~~~---~~~~~~~~-~----v~~~~~sp~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 583 GVVLLWDL------AEGKK---LYSLEANS-V----IHALCFSPNRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp SBCEEEET------TTTEE---EECCBCSS-C----EEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred CeEEEEEC------CCCce---EEEecCCC-c----EEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence 99999954 33332 44555443 3 99999999999887766 566999985
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1e-28 Score=264.59 Aligned_cols=241 Identities=16% Similarity=0.149 Sum_probs=202.4
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.++|.+++|+|++. .+++++.++.|++|++.++... ....+.+|...
T Consensus 8 ~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~--------------------------------~~~~~~~h~~~ 54 (372)
T 1k8k_C 8 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWV--------------------------------QVHELKEHNGQ 54 (372)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEE--------------------------------EEEEEECCSSC
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEE--------------------------------eeeeecCCCCc
Confidence 67899999999993 5667768999999997654100 11235589999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR-- 571 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~-- 571 (707)
|.+++|+|++++|++++.|+ .|++|++.++.... ..+ .+...|.+++|+|++.+|++++ ++.|++||+..+.
T Consensus 55 v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDR---NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp EEEEEEETTTTEEEEEETTS---CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred ccEEEEeCCCCEEEEEcCCC---eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 99999999999999999988 99999998876441 233 7889999999999999999998 8999999998765
Q ss_pred -EEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-----------------CCcceEEeecCCCCEEEEEEc
Q 005235 572 -LIKKL-ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-----------------SSKPYRVLKCHPKDITNVAFH 632 (707)
Q Consensus 572 -~~~~l-~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-----------------~~~~~~~l~~h~~~I~~vafs 632 (707)
....+ ..|...|.+++|+|++.+|++|+.||.|++||+.. ...++..+..|...|.+++|+
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 23333 56788999999999999999999999999999641 236788888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 633 RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 633 pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|++.+|++++.||.|++||+. +.. ++..+.+|... |.+++|+|++.+|+++ .|+.|++|++
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~------~~~---~~~~~~~~~~~----v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADAD------KKM---AVATLASETLP----LLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGG------GTT---EEEEEECSSCC----EEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECC------CCc---eeEEEccCCCC----eEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999999999999999654 333 47888899877 9999999999988877 8999999984
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6.6e-28 Score=254.95 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=207.9
Q ss_pred CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc
Q 005235 407 SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK 485 (707)
Q Consensus 407 tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~ 485 (707)
+..+..+|++ .+.|++|+|+|++...|++++.|++|+||++....... ..
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-----------------------------~~ 77 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-----------------------------GI 77 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-----------------------------EE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-----------------------------ce
Confidence 3445567776 89999999999854468888999999999987643210 00
Q ss_pred cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 486 LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 486 ~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
....+.+|...|.+++|+|+|.+|++++.|+ .|++|+....... ... .+...+..+.+++++.+|++++ |+.++
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~---~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~ 153 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDG---TLRLWDLTTGTTT-RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccc---cceEEeeccccee-eeecCCCCceeEEEEeecCccceeecCCCeEE
Confidence 1123568999999999999999999999998 9999999988876 555 7788899999999999999998 99999
Q ss_pred EEECCCCeE-EEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 564 VYDLLKQRL-IKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 564 iwDl~~~~~-~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
+||+..... ...+.+|...+.+++|++++ .++++++.|+.|++||+.++ ++...+.+|...|++++|+|++++|++
T Consensus 154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 999987644 34456788889999998875 57889999999999999977 788899999999999999999999999
Q ss_pred EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+.||+|+|||+. +.. ++..+.++.. |.+++|+|++.++ +++.|+.|++||+
T Consensus 233 ~s~Dg~i~iwd~~------~~~---~~~~~~~~~~-----v~~~~~~~~~~~~-~~~~d~~i~iwd~ 284 (340)
T 4aow_A 233 GGKDGQAMLWDLN------EGK---HLYTLDGGDI-----INALCFSPNRYWL-CAATGPSIKIWDL 284 (340)
T ss_dssp EETTCEEEEEETT------TTE---EEEEEECSSC-----EEEEEECSSSSEE-EEEETTEEEEEET
T ss_pred EeCCCeEEEEEec------cCc---eeeeecCCce-----EEeeecCCCCcee-eccCCCEEEEEEC
Confidence 9999999999543 333 3666776653 9999999987654 5667999999985
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8.6e-28 Score=266.95 Aligned_cols=270 Identities=10% Similarity=0.062 Sum_probs=223.8
Q ss_pred EEEec-C-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc----ccccCCCCcEEEEecC
Q 005235 412 RVLEI-G-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP----TAPDDNMASIVSWLQH 483 (707)
Q Consensus 412 ~~l~~-~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~ 483 (707)
..+.+ . ..+.++.++++ .+++++.|+.|++||+.++.. .+.+|...+.++.+. +++++.++.|++|+..
T Consensus 115 ~~l~~h~~~v~~~~~~~~~---~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEECCC---EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 34444 3 34577777542 689999999999999988764 445688888888876 8899999999999998
Q ss_pred Cccce-EEeccCCCeEEEEEc--CCCCEEEEEeCCCCccEEEEEECCCCcee----------------------eeee-c
Q 005235 484 DKLDG-IRLRHFKMVSSVEWH--RRGDYLSTVMPAGESRAIFMHQLSKKLSH----------------------RIPF-K 537 (707)
Q Consensus 484 ~~~~~-~~~~h~~~V~~v~~s--p~g~~lat~s~dg~~~~V~Iwdl~~~~~~----------------------~~~~-~ 537 (707)
+.... .+.+|...|.+++|+ +++.+|++++.|+ .|++|++.+.... ...+ .
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS---CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC---cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 76544 366799999999998 5789999999998 9999999876532 0234 6
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
|...|.++ ++++.+|++++ |+.|++||+.+++++..+.+|...|.+++|+|+|.+|++|+.||.|++||+.++ +++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~ 345 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELM 345 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEE
Confidence 67777766 67788999998 999999999999999999999999999999999999999999999999999987 789
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
..+.+|...|.+++|+ +.+|++|+.||+|++|++. +... ...+ .|... +..++|+|++.+|+++
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~------~~~~---~~~~-~~~~~----~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN------DYSR---KFSY-HHTNL----SAITTFYVSDNILVSG 409 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETT------TCCE---EEEE-ECTTC----CCEEEEEECSSEEEEE
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC------CCce---eeee-cCCCC----ccEEEEEeCCCEEEEe
Confidence 9999999999999997 5799999999999999654 3222 2222 23333 8889999999999999
Q ss_pred eCCCcEEEEeC
Q 005235 697 GADSVIRLYCH 707 (707)
Q Consensus 697 g~Dg~IrlWdl 707 (707)
+ ||.|++||+
T Consensus 410 ~-dg~i~iwd~ 419 (464)
T 3v7d_B 410 S-ENQFNIYNL 419 (464)
T ss_dssp E-TTEEEEEET
T ss_pred c-CCeEEEEEC
Confidence 8 999999985
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-30 Score=278.41 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=191.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|++++|+|++. .|++++.++.|++|++.++.. .....+.+|...
T Consensus 11 ~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~--------------------------------~~~~~~~~h~~~ 57 (377)
T 3dwl_C 11 PKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGW--------------------------------KHARTFSDHDKI 57 (377)
T ss_dssp SSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEE--------------------------------EECCCBCCCSSC
T ss_pred CCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCce--------------------------------EEEEEEecCCce
Confidence 67899999999993 666777899999999765410 011124579999
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
|.+++|+|+|++|++++.|+ .|++||+.++. .. ..+ .|...|.+++|+|++.+|++++ |+.|++||+.+++
T Consensus 58 v~~~~~s~~~~~l~s~s~d~---~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDR---NAYVYEKRPDGTWKQT-LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEEEEECTTTCCEEEEETTS---SEEEC------CCCCE-EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred EEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCCceeee-eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 99999999999999999988 99999999876 33 455 8999999999999999999998 8999999999876
Q ss_pred ---EEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------CcceEEeecCCCCEEEEE
Q 005235 572 ---LIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS-----------------SKPYRVLKCHPKDITNVA 630 (707)
Q Consensus 572 ---~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~-----------------~~~~~~l~~h~~~I~~va 630 (707)
+...+.. |...|.+++|+|++.+|++|+.|+.|++||+... ..++..+ +|...|++++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 4677877 8899999999999999999999999999998521 2455556 8999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCc-ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL-IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~-~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|+|++++||+|+.||+|+||++. +... ...+..+.+|... |.+++|+|++.+|++++.|+.+ +|+
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPS------APEQPPRALITVKLSQLP----LRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEEC------STTSCEEECCCEECSSSC----EEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECC------CCCCcceeeEeecCCCCc----eEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 99999999999999999999654 2221 1125678899887 9999999999999999877766 654
No 94
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.3e-28 Score=262.56 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=206.9
Q ss_pred CCcEEEEEEccC---CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235 417 GEAIQYVAWNPL---PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH 493 (707)
Q Consensus 417 ~~~V~~v~~spd---g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h 493 (707)
.+.|.+|+|+|+ +...+++++.++.|++|++.++... ..+.. .....|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~-----~~~~~~ 68 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQS-----YVDADA 68 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEE-----EECSCT
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------Eeeee-----ccccCC
Confidence 789999999984 4446888899999999998654211 11100 001137
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEE
Q 005235 494 FKMVSSVEWHRR----GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 494 ~~~V~~v~~sp~----g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwD 566 (707)
...|.+++|+|+ |.+|++++.|+ .|++||+.++... ..+ .|...|.+++|+| ++.+|++++ |+.|++||
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRG---IIRIINPITMQCI-KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTC---EEEEECTTTCCEE-EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCC---EEEEEEchhceEe-eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 788999999999 67999999998 9999999998887 777 7999999999999 899999998 89999999
Q ss_pred CCCCeEEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce---------------------------
Q 005235 567 LLKQRLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY--------------------------- 616 (707)
Q Consensus 567 l~~~~~~~~l---~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~--------------------------- 616 (707)
+.+++.+..+ ..|...|.+++|+|++.+|++|+.||.|++||+.++ ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCc
Confidence 9999999888 678899999999999999999999999999999865 322
Q ss_pred -EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC-----CCCCcccceEEeeCCCCCCCCCeeEEEEcCC-
Q 005235 617 -RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL-----NQNPLIVPLEILRGHTSSNGRGVMDCKFHPR- 689 (707)
Q Consensus 617 -~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl-----~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd- 689 (707)
..+.+|...|.+++|+ +.+|++++.||.|++|+....... .......++..+.+|... |.+++|+|+
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~ 297 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD----IWYMRFSMDF 297 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC----SSCCCCEECT
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc----EEEEEEcCCC
Confidence 2334499999999999 779999999999999986533210 011222457788899887 999999999
Q ss_pred -CCEEEEEeCCCcEEEEeC
Q 005235 690 -QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 690 -g~~L~s~g~Dg~IrlWdl 707 (707)
+.+|++++.||.|++|++
T Consensus 298 ~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp TSSEEEEECTTSCEEEEEC
T ss_pred CCcEEEEEecCCcEEEEEC
Confidence 999999999999999985
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.3e-28 Score=264.63 Aligned_cols=256 Identities=13% Similarity=0.137 Sum_probs=201.1
Q ss_pred EEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEE
Q 005235 402 IWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSW 480 (707)
Q Consensus 402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW 480 (707)
+|++.+.+....+.. .+.|.+++|+|++...|++++.|+.|++|++.++... ...
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------~~~ 112 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------------------SFI 112 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------------------EEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------------------eee
Confidence 444556666666665 7899999999998447888889999999998764221 000
Q ss_pred ecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEE
Q 005235 481 LQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFF 555 (707)
Q Consensus 481 ~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~ 555 (707)
...+|...|.+++|+| ++.+|++++.|+ .|++||+.+... ..+ .+...|.+++|+|++.+|+
T Consensus 113 --------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 113 --------QGMGPGDAITGMKFNQFNTNQLFVSSIRG---ATTLRDFSGSVI--QVFAKTDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp --------CCCSTTCBEEEEEEETTEEEEEEEEETTT---EEEEEETTSCEE--EEEECCCCSSCCEEEEEEETTTTEEE
T ss_pred --------ecCCcCCceeEEEeCCCCCCEEEEEeCCC---EEEEEECCCCce--EEEeccCCCCCCeEEEEECCCCCEEE
Confidence 1236999999999999 789999999988 999999996443 344 3347899999999999999
Q ss_pred EEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---CcceEEeecCCCCEEEEE
Q 005235 556 VST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS---SKPYRVLKCHPKDITNVA 630 (707)
Q Consensus 556 v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~---~~~~~~l~~h~~~I~~va 630 (707)
+++ |+.|++||+ +++.+..+..|...|.+++|+|++. +|++|+.|+.|++||+.+. ..++..+ +|...|++++
T Consensus 180 ~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~ 257 (383)
T 3ei3_B 180 TGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY 257 (383)
T ss_dssp EEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE
T ss_pred EECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE
Confidence 998 899999999 5778889999999999999999999 9999999999999999873 2455555 6999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC-------CC------CCCCeeEEEEcCCCCEEEEE
Q 005235 631 FHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT-------SS------NGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 631 fsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~-------~~------~~~gV~~l~fspdg~~L~s~ 696 (707)
|+| ++.+|++++.||.|+||++... .. +..+.+|. .. ....+..++|+|++.+ ++
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~ 326 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYDW------SK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL 326 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTBT------TS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCCC------cc---ccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence 999 9999999999999999966432 22 23333332 11 0011444566666655 67
Q ss_pred eCCCcEEEEeC
Q 005235 697 GADSVIRLYCH 707 (707)
Q Consensus 697 g~Dg~IrlWdl 707 (707)
+.||+|+|||+
T Consensus 327 s~d~~i~iwd~ 337 (383)
T 3ei3_B 327 NDKRTIDIYDA 337 (383)
T ss_dssp TCCCCEEEEET
T ss_pred CCCCeEEEEec
Confidence 78999999985
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-28 Score=267.98 Aligned_cols=274 Identities=10% Similarity=0.076 Sum_probs=215.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCe---EEEEEecC-------------------------------------------
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGR---CLRVLEIG------------------------------------------- 417 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~---~l~~l~~~------------------------------------------- 417 (707)
|..++.+++++ .++.|++||+.+|+ .+..+...
T Consensus 12 ~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (450)
T 2vdu_B 12 TSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAK 90 (450)
T ss_dssp ECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------------
T ss_pred ecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCcc
Confidence 33445566665 57899999999998 77666531
Q ss_pred ------------CcEEEEEEccCCCccE-EEEEeCCeEEEEECC--CCCchhcccccceeeecccccccCCCCcEEEEec
Q 005235 418 ------------EAIQYVAWNPLPELPV-LAVSVGQDVLILNTG--LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ 482 (707)
Q Consensus 418 ------------~~V~~v~~spdg~~~l-la~s~d~~V~lwd~~--~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~ 482 (707)
+.|.+++|+|++. .| ++++.|+.|++|++. ++.. +..+
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~------------------------~~~~-- 143 (450)
T 2vdu_B 91 VPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNV------------------------LKLR-- 143 (450)
T ss_dssp ---------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSC------------------------EEEE--
T ss_pred ccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCce------------------------eeee--
Confidence 1599999999994 44 556688999999976 3311 1111
Q ss_pred CCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee----ee-ccCCCeEEEEEeCC---CCEE
Q 005235 483 HDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI----PF-KLHGLPVSSVFHPT---RSIF 554 (707)
Q Consensus 483 ~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~----~~-~~~~~V~~v~fspd---~~~l 554 (707)
....|...|.+++|+|+|.+|++++.++ .|.+|++...... . .+ .|.+.|.+++|+|+ +.+|
T Consensus 144 ------~~~~~~~~v~~~~~sp~~~~l~~~~~~g---~v~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 213 (450)
T 2vdu_B 144 ------KRFCFSKRPNAISIAEDDTTVIIADKFG---DVYSIDINSIPEE-KFTQEPILGHVSMLTDVHLIKDSDGHQFI 213 (450)
T ss_dssp ------EEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEETTSCCCS-SCCCCCSEECSSCEEEEEEEECTTSCEEE
T ss_pred ------ecccCCCCceEEEEcCCCCEEEEEeCCC---cEEEEecCCcccc-cccceeeecccCceEEEEEcCCCCCCcEE
Confidence 1125778999999999999999999988 9999999877654 3 55 88999999999999 9899
Q ss_pred EEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-----------
Q 005235 555 FVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----------- 621 (707)
Q Consensus 555 ~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----------- 621 (707)
++++ |+.|++||+.+++++.. +.+|...|.+++|+ +|.+|++|+.|+.|++||+.++ +++..+..
T Consensus 214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTT
T ss_pred EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhc
Confidence 9998 89999999999888877 55888999999999 9999999999999999999987 66676653
Q ss_pred --------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235 622 --------------HPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF 686 (707)
Q Consensus 622 --------------h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f 686 (707)
+...|.+++|+|++++|++++ .|+.|+||++. + .......++..+.+| .. |.+++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~---~-~~~~~l~~~~~~~~~-~~----v~~~~~ 362 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS---E-KQKGDLALKQIITFP-YN----VISLSA 362 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC---S-SSTTCEEEEEEEECS-SC----EEEEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec---c-CCCCceeeccEeccC-Cc----eEEEEe
Confidence 245799999999999999998 89999999651 0 233333567788888 44 999999
Q ss_pred cCCCCEEEEE-eC------CCcEEEEeC
Q 005235 687 HPRQPWLFTA-GA------DSVIRLYCH 707 (707)
Q Consensus 687 spdg~~L~s~-g~------Dg~IrlWdl 707 (707)
+|++ .++++ +. +..|.+|.+
T Consensus 363 ~~~~-~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 363 HNDE-FQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp ETTE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred cCCc-EEEEEecccCCCCCCcceEEEEE
Confidence 9964 44444 32 556888863
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.9e-28 Score=261.77 Aligned_cols=290 Identities=11% Similarity=0.055 Sum_probs=202.9
Q ss_pred EEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce--eeeccc----ccccCCC
Q 005235 402 IWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL--LHVETP----TAPDDNM 474 (707)
Q Consensus 402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v--~~~~~~----~~~~~~d 474 (707)
||.+.+.+.+..+.. .+.|.+|+|+|+| .+++++.++.+++|++.++..........+ ....+. .++++.+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg--~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ--SCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ----------------CCCCCEEEECTTS--SEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccccCCCceEEEEECCCC--CEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 566677777665554 7899999999999 577777777899999887644332221222 222222 3567778
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC-ceeeeeeccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK-LSHRIPFKLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~-~~~~~~~~~~~~V~~v~fspd~~~ 553 (707)
+.+++|+...+.......+...|.+++|++++ ++++. ++ .|+||++.+. ... ..+.. ....+++++ .+
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~---~i~i~d~~~~~~~~-~~~~~--~~~~~~~s~--~~ 149 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY-GD---VISVFKFGNPWKRI-TDDIR--FGGVCEFSN--GL 149 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE-TT---EEEEEESSTTCCBS-SCCEE--EEEEEEEET--TE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE-cC---EEEEEECCCCceee-EEecc--CCceEEEEc--cE
Confidence 89999999877766666688899999998764 44443 45 8999999987 444 45532 455667777 66
Q ss_pred EEEE--e-CCeEEEEECCCCe----------------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCC
Q 005235 554 FFVS--T-KKNIRVYDLLKQR----------------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSS 613 (707)
Q Consensus 554 l~v~--s-dg~I~iwDl~~~~----------------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~ 613 (707)
++++ + +|.|++||+.++. .+..+.+|...|++++|+|+|.+|++|+.|++ |++||+.++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~- 228 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG- 228 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence 6664 4 8999999999765 26788999999999999999999999999998 999999987
Q ss_pred cceEEee-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc------------eEEeeCCCCCCCC
Q 005235 614 KPYRVLK-C-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP------------LEILRGHTSSNGR 679 (707)
Q Consensus 614 ~~~~~l~-~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p------------l~~l~gh~~~~~~ 679 (707)
+++..+. + |...|++++|+|++++|++|+.|++|+||++......... .... +..+.-... ...
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 306 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH-ALKGWINMKYFQSEWSLCNFKLSVD-KHV 306 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE-ETTTTEECCCCCCSSCSEEEECCCC-TTC
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc-cccceeeccccccccceeEEEeccC-CCC
Confidence 6788887 5 9999999999999999999999999999977532110000 0000 000000000 001
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 680 GVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
....++|++++..|++++.||.+++|++
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 1467999999999999999999999974
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.4e-28 Score=265.05 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=193.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||.|+|||+.+++++..+.. ...|.+++|+++ .+++++.++.|++|++.....
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~--------------- 208 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANH--------------- 208 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSC---------------
T ss_pred CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC---EEEEEcCCCCEEEEecccCcc---------------
Confidence 5899999999999999999999998876 889999999543 689999999999999864321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
....+.+|...|.+++|+|++.+|++++.|+ .|++||+.+.... ..+ .+...|.+++
T Consensus 209 ------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~-~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 209 ------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN---VVQIWDARSSIPK-FTKTNHNAAVKAVA 266 (401)
T ss_dssp ------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTCSSEE-EEECCCSSCCCEEE
T ss_pred ------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC---eEEEccCCCCCcc-EEecCCcceEEEEE
Confidence 1123568999999999999999999999988 9999999998877 777 8899999999
Q ss_pred EeCCCC-EEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCC-cceEEe
Q 005235 547 FHPTRS-IFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSS-KPYRVL 619 (707)
Q Consensus 547 fspd~~-~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~-~~~~~l 619 (707)
|+|++. ++++++ |+.|++||+.+++++..+.. ...|.+++|+|+|.+|+++ +.||.|++||+.++. .....+
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~ 345 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence 999765 555554 89999999999999988874 4789999999999999994 489999999998752 233447
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.+|...|.+++|+|++++|++++.||.|+||++.
T Consensus 346 ~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 346 PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 7999999999999999999999999999999654
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4e-27 Score=255.09 Aligned_cols=262 Identities=12% Similarity=0.114 Sum_probs=214.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEE-EEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVL-AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~ll-a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++++.|++|++||+.+++++..+.....+.+++|+|++. .++ +++.++.|++||+.++..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~d~~i~v~d~~~~~~--------------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT-KVYVANAHSNDVSIIDTATNNV--------------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS-EEEEEEGGGTEEEEEETTTTEE---------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCC-EEEEECCCCCeEEEEECCCCeE---------------
Confidence 478899999999999999999999999888899999999994 453 444789999999766421
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV 546 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~ 546 (707)
.....+...+.+++|+|+|++|++++ .++ .|.+||+.++... ..+.+...+.+++
T Consensus 67 --------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~---~v~v~d~~~~~~~-~~~~~~~~~~~~~ 122 (391)
T 1l0q_A 67 --------------------IATVPAGSSPQGVAVSPDGKQVYVTNMASS---TLSVIDTTSNTVA-GTVKTGKSPLGLA 122 (391)
T ss_dssp --------------------EEEEECSSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEE-EEEECSSSEEEEE
T ss_pred --------------------EEEEECCCCccceEECCCCCEEEEEECCCC---EEEEEECCCCeEE-EEEeCCCCcceEE
Confidence 11223344899999999999887665 446 9999999998876 6666667889999
Q ss_pred EeCCCCEEE-EEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 547 FHPTRSIFF-VST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNL-IVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 547 fspd~~~l~-v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
|+|+++.|+ +++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.++ .....+. +.
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~ 199 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VE 199 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CS
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cC
Confidence 999999885 555 899999999999999888876 567999999999988 56778899999999876 6666665 55
Q ss_pred CCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCC
Q 005235 624 KDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGAD 699 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~D 699 (707)
..+.+++|+|++.+|++++ .++.|++||. .+.. ++..+..|.. +.+++|+|++++| ++++.|
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~------~~~~---~~~~~~~~~~-----~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT------GTNK---ITARIPVGPD-----PAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEET------TTTE---EEEEEECCSS-----EEEEEECTTSSEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEEC------CCCe---EEEEEecCCC-----ccEEEEccCCCEEEEEcCCC
Confidence 6899999999999888887 6899999954 3332 3566776653 8999999999988 677889
Q ss_pred CcEEEEeC
Q 005235 700 SVIRLYCH 707 (707)
Q Consensus 700 g~IrlWdl 707 (707)
+.|++||+
T Consensus 266 ~~v~v~d~ 273 (391)
T 1l0q_A 266 NTVSVIDT 273 (391)
T ss_dssp TEEEEEET
T ss_pred CEEEEEEC
Confidence 99999985
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=270.91 Aligned_cols=255 Identities=15% Similarity=0.201 Sum_probs=197.2
Q ss_pred cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC-
Q 005235 416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF- 494 (707)
Q Consensus 416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~- 494 (707)
..+.|.+|+|+|++. .|++++.|+.|+||++.++...... ..+... ....+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~----------------~~~~~~-------~~~~~~~h~~ 82 (447)
T 3dw8_B 27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSH----------------SRGEYN-------VYSTFQSHEP 82 (447)
T ss_dssp GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CC----------------CCCCEE-------EEEEEECCCC
T ss_pred ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcc----------------ccccee-------Eecccccccc
Confidence 368999999999994 7888889999999998765321000 000000 011345676
Q ss_pred -----------CCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCcee-----------------------------
Q 005235 495 -----------KMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSH----------------------------- 532 (707)
Q Consensus 495 -----------~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~----------------------------- 532 (707)
..|.+++|+|++ .+|++++.|+ .|++|++......
T Consensus 83 ~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (447)
T 3dw8_B 83 EFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK---TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRP 159 (447)
T ss_dssp EEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS---CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEE
T ss_pred cccccccccccCceEEEEEcCCCCcceEEEeCCCC---eEEEEecccccCCcceecccCccccccCcccccceEeccccc
Confidence 889999999998 8999999988 9999998764321
Q ss_pred ---------eeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEEEE-------EeCCCCCeEEEEEcCCC-
Q 005235 533 ---------RIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKK-------LETGLKEVSSIAIHPAG- 592 (707)
Q Consensus 533 ---------~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~~~-------l~~~~~~I~sl~~spdg- 592 (707)
...+ .|...|.+++|+|++.+|++|.|+.|++||+.+ ++.+.. +.+|...|++++|+|+|
T Consensus 160 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 160 MDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp EEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred hheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence 0122 688999999999999999998899999999994 444443 44788889999999999
Q ss_pred CEEEEEECCCcEEEEECCCCCcc----eEEeecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKP----YRVLKCHPK------------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYS 656 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~----~~~l~~h~~------------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~ 656 (707)
.+|++|+.||.|++||++++ .. ...+..|.. .|.+++|+|++++|++++. |.|+|||+...
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~- 316 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME- 316 (447)
T ss_dssp TEEEEEETTSCEEEEETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC-
T ss_pred cEEEEEeCCCeEEEEECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC-
Confidence 99999999999999999976 43 688888876 8999999999999999999 99999965421
Q ss_pred CCCCCCcccceEEeeCCCCCCC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 657 DLNQNPLIVPLEILRGHTSSNG-----------RGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 657 Dl~~~~~~~pl~~l~gh~~~~~-----------~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.. ++..+.+|..... ..+..++|+|++++|++|+.||.|++||+
T Consensus 317 ----~~---~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 317 ----NR---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp ----SS---CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ----cc---ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 22 3667788864200 00334999999999999999999999985
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5e-28 Score=259.25 Aligned_cols=229 Identities=18% Similarity=0.194 Sum_probs=192.0
Q ss_pred cEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.++++|+.||+|+||++. +++++..+.. .+.|.+++|+|+ + ..|++++.|+.|++|++.++...
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~---------- 92 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWS---------- 92 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEE----------
T ss_pred CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCcee----------
Confidence 489999999999999998 5667777765 789999999977 6 47888889999999997654210
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH 539 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~ 539 (707)
.......|...|.+++|+|+ +.+|++++.|+ .|++||+....... ..+ .+.
T Consensus 93 ----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 93 ----------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCTTSCCCEEEEECCT
T ss_pred ----------------------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCC---cEEEEecCCCCceeeEEecCCC
Confidence 11134578999999999999 99999999998 99999998874431 344 888
Q ss_pred CCeEEEEEeC-------------CCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCC---CCEEEEE
Q 005235 540 GLPVSSVFHP-------------TRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPA---GDNLIVG 598 (707)
Q Consensus 540 ~~V~~v~fsp-------------d~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spd---g~~L~sG 598 (707)
..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|+|+ +.+|++|
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 9999999999 689999988 899999999865 356778889999999999999 8999999
Q ss_pred ECCCcEEEEECCCCCcc--eEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 599 SREGKLCWFDMDLSSKP--YRVL--KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~~~--~~~l--~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+.||.|++||+..+..+ ...+ ..|...|++++|+|++.+|++++.||.|+||++.
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99999999999876322 2222 2378899999999999999999999999999875
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=8.7e-28 Score=255.50 Aligned_cols=244 Identities=13% Similarity=0.136 Sum_probs=197.6
Q ss_pred cCCcEEEEEEccCCCccEEEEE-e---CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235 416 IGEAIQYVAWNPLPELPVLAVS-V---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL 491 (707)
Q Consensus 416 ~~~~V~~v~~spdg~~~lla~s-~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~ 491 (707)
+.+.|.+|+|+|++. .+++++ . ++.|++|++.++... .....
T Consensus 17 h~~~v~~~~~~p~~~-~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------------------~~~~~ 62 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA-KFVTMGNFARGTGVIQLYEIQHGDLK---------------------------------LLREI 62 (357)
T ss_dssp CSSCEEEEEECTTSS-EEEEEEC--CCCEEEEEEEECSSSEE---------------------------------EEEEE
T ss_pred CCCceEEEEEcCCCc-eEEEecCccCCCcEEEEEeCCCCccc---------------------------------ceeee
Confidence 378999999999984 455554 3 889999997654221 01234
Q ss_pred ccCCCeEEEEEcCC---CCEEEEEeCCCCccEEEEEECCCCc-eeeeee-ccCCCeEEEEE------eCCCCEEEEEe-C
Q 005235 492 RHFKMVSSVEWHRR---GDYLSTVMPAGESRAIFMHQLSKKL-SHRIPF-KLHGLPVSSVF------HPTRSIFFVST-K 559 (707)
Q Consensus 492 ~h~~~V~~v~~sp~---g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~-~~~~~V~~v~f------spd~~~l~v~s-d 559 (707)
+|...|.+++|+|+ |.+|++++.|+ .|++|++.+.. .. ..+ .|...|.+++| +|++.+|++++ |
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGG---NLHIWNLEAPEMPV-YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTS---CEEEECTTSCSSCS-EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCC---eEEEEeCCCCCccE-EEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 78999999999998 79999999988 99999999887 55 677 89999999954 67899999998 8
Q ss_pred CeEEEEECCCCe-EEEEEeCCCC----CeEEEE----EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEE
Q 005235 560 KNIRVYDLLKQR-LIKKLETGLK----EVSSIA----IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA 630 (707)
Q Consensus 560 g~I~iwDl~~~~-~~~~l~~~~~----~I~sl~----~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~va 630 (707)
+.|++||+.+++ .+..+..+.. .|.+++ |+|++.+|++|+.||.|++||++++ .+ .....|...|.+++
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLE 216 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEE
Confidence 999999999876 6777766554 789998 7899999999999999999999876 43 44567889999999
Q ss_pred EcC---CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235 631 FHR---SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYC 706 (707)
Q Consensus 631 fsp---dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWd 706 (707)
|+| ++.+|++|+.||.|++|++.....+. ......+.+|... |.+++|+|+++ +|++++.||.|++|+
T Consensus 217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTK----GFASVSEKAHKST----VWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp ESCSSSSCCEEEEEESTTEEEEEEEEEEETTT----EEEEEEEECCSSC----EEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred cCCCCCCCCEEEEECCCCeEEEEeCcCCCccc----ceeeeccCCCcCC----EEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 999 89999999999999999765432111 0112245588887 99999999999 899999999999998
Q ss_pred C
Q 005235 707 H 707 (707)
Q Consensus 707 l 707 (707)
+
T Consensus 289 ~ 289 (357)
T 3i2n_A 289 Y 289 (357)
T ss_dssp E
T ss_pred c
Confidence 4
No 103
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=8.5e-27 Score=256.60 Aligned_cols=224 Identities=16% Similarity=0.244 Sum_probs=192.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++++|+.||+|+|||+.++++++.+.. ...|.+++|++. .+++++.++.+.+|+.......
T Consensus 160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~~~~-------------- 222 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHH-------------- 222 (420)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSCE--------------
T ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeeccccee--------------
Confidence 4899999999999999999999999887 788999888654 5888889999999997653211
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eee-ccCCCeE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPF-KLHGLPV 543 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~-~~~~~V~ 543 (707)
...+.+|...+..+.|+++|.++++++.|+ .|+||++..+.... ..+ .+.+.|.
T Consensus 223 -------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~---~v~i~~~~~~~~~~~~~~~~~~~~~~V~ 280 (420)
T 4gga_A 223 -------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVK 280 (420)
T ss_dssp -------------------EEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred -------------------eEEecccccceeeeeecCCCCeeeeeeccc---cceEEeeccccccceeeeeecccCCcee
Confidence 123568999999999999999999999998 99999998765421 233 7889999
Q ss_pred EEEEeCCCC-EEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcceE
Q 005235 544 SSVFHPTRS-IFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--REGKLCWFDMDLSSKPYR 617 (707)
Q Consensus 544 ~v~fspd~~-~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~Dg~I~vwDl~~~~~~~~ 617 (707)
+++|+|.+. ++++++ |++|++||+.+++++..+..+ ..+.++.|+|++..|++++ .|+.|+|||+.++ +++.
T Consensus 281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~ 358 (420)
T 4gga_A 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVA 358 (420)
T ss_dssp EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEE
T ss_pred eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEE
Confidence 999999765 455443 899999999999999988876 6799999999999998876 7899999999987 7899
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
++.+|...|++|+|+|+|.+|||||.||+|+||++.
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 999999999999999999999999999999999653
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2e-27 Score=250.89 Aligned_cols=269 Identities=13% Similarity=0.085 Sum_probs=191.2
Q ss_pred EEEEEeCCCcEEEEeCCCC---eEEEEEec-CCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGSTDGTVRIWEVESG---RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg---~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
..+......+|++|+..++ ++++++.+ ..+|..|.+.||. ..|++++.++ .+.. +..+
T Consensus 55 ~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~----------------v~sl 117 (356)
T 2w18_A 55 PCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV-YNLVCVALGNLEIRE----------------IRAL 117 (356)
T ss_dssp EEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC-CSCEEEEECSSSEEE----------------EEEE
T ss_pred cEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc-cceeeeeeccccccc----------------eEEE
Confidence 3333444568999999999 89999999 5689999999987 4677777654 1111 1111
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-ccCCCe
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KLHGLP 542 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V 542 (707)
+....|..+..|.. ..+|...|.++ ++|+.+.+++ .+.++.|++|+++. ++.. ..+ .|...+
T Consensus 118 ----a~spd~~~~~~~l~-------s~g~~~~v~~l---~~g~lv~ss~-~g~d~~V~~~~~s~dG~~~-~s~~~~~~~v 181 (356)
T 2w18_A 118 ----FCSSDDESEKQVLL-------KSGNIKAVLGL---TKRRLVSSSG-TLSDQQVEVMTFAEDGGGK-ENQFLMPPEE 181 (356)
T ss_dssp ----CC------CCEEEE-------EEEEEEEEEEE---TTTEEEEEES-SSTTCEEEEEEECTTSCEE-EEEEECCCSS
T ss_pred ----EECCCccccccEEE-------eCCCeEEEEec---CCCcEEEecc-cCCCCcEEEEEECCCCcee-eeeccCCCce
Confidence 11112222222211 12344344443 4555555543 22234999999955 5555 566 888889
Q ss_pred EEEEEeC---CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC---CCeEEEEEcCCCCEE------------EEEECCCc
Q 005235 543 VSSVFHP---TRSIFFVST-KKNIRVYDLLKQRLIKKLETGL---KEVSSIAIHPAGDNL------------IVGSREGK 603 (707)
Q Consensus 543 ~~v~fsp---d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~spdg~~L------------~sGs~Dg~ 603 (707)
..++|+| ++.+|++++ |++|+|||+.++++++++.+|. ..+.+++|+|+|.++ ++|+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 9999999 789999988 9999999999999999998754 357888999999876 56888999
Q ss_pred EEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235 604 LCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~ 678 (707)
|++||..++ +.+.++ .+|...+.+..++ +.++|+|+.|++|+|| |+.++.. +.+|.+|...
T Consensus 262 IklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIW------Dl~tGk~---l~tL~gH~~~-- 327 (356)
T 2w18_A 262 LIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIW------DLLLGQC---TALLPPVSDQ-- 327 (356)
T ss_dssp EEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEE------ETTTCSE---EEEECCC--C--
T ss_pred EEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEE------ECCCCcE---EEEecCCCCC--
Confidence 999999877 666655 3676665555554 8899999999999999 5555554 7889999765
Q ss_pred CCee-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 679 RGVM-DCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 679 ~gV~-~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+. .++|||+|++|+||+.|++|+||++
T Consensus 328 --vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 --HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 54 6899999999999999999999984
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=1.1e-27 Score=253.63 Aligned_cols=247 Identities=16% Similarity=0.096 Sum_probs=200.6
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|.+++|+|++ ..|++++.++.|++|++..+.... .......|...
T Consensus 11 ~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~-------------------------------~~~~~~~~~~~ 58 (342)
T 1yfq_A 11 KDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKHP 58 (342)
T ss_dssp SSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSSC
T ss_pred CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccc-------------------------------cceeeeecCCc
Confidence 6789999999998 378888899999999976542100 01124488999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCCccEEEEEEC-CCCceeeeee-c--cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-
Q 005235 497 VSSVEWHRRGD-YLSTVMPAGESRAIFMHQL-SKKLSHRIPF-K--LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK- 569 (707)
Q Consensus 497 V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl-~~~~~~~~~~-~--~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~- 569 (707)
|.+++|+|++. +|++++.++ .|++|++ .++.. ..+ . |...|.+++|+| +.+|++++ |+.|++||+.+
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~ 132 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQG---EILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTS---CEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred eEEEEECCCCCcEEEEEcCCC---eEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence 99999999999 999999988 9999999 87765 455 7 999999999999 99999988 99999999987
Q ss_pred --------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CCc-ceEEeecCCCCEEEEEEcC-CCCEE
Q 005235 570 --------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-SSK-PYRVLKCHPKDITNVAFHR-SYPLF 638 (707)
Q Consensus 570 --------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-~~~-~~~~l~~h~~~I~~vafsp-dg~ll 638 (707)
++++..+. +...|.+++|+|++ |++|+.|+.|++||+.. ... .......|...|++++|+| ++.+|
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 133 GDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp TTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 66665555 77889999999887 99999999999999987 533 3344557888999999999 99999
Q ss_pred EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC-----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-----NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~-----~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
++++.||.|+||++...++ .....++..+.+|... +...|.+++|+|++.+|++++.||.|++||+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGD---DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp EEEETTSEEEEEECCTTCC---STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EEEecCCcEEEEEEcCCCc---ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 9999999999997643210 1111346778888640 0113999999999999999999999999985
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-26 Score=240.86 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=202.4
Q ss_pred eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235 409 RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD 487 (707)
Q Consensus 409 ~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~ 487 (707)
+++..+.. .+.|.+++| |++. .+++++.|+.|++|++.++.. .
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~----------------------------------~ 52 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWL----------------------------------G 52 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEE----------------------------------E
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEE----------------------------------E
Confidence 56677776 789999999 8773 788899999999999755311 1
Q ss_pred eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
.....|...|.+++|+|++.+|++++.++ .|++|++...... ...+ .|...|.+++| ++.+|++++ |+.|+
T Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~ 127 (313)
T 3odt_A 53 TVVYTGQGFLNSVCYDSEKELLLFGGKDT---MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK 127 (313)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTS---CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEeecCCccEEEEEECCCCCEEEEecCCC---eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence 23557899999999999999999999998 9999998765321 1455 78999999999 467888888 89999
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEE
Q 005235 564 VYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSg 641 (707)
+|| .++.+..+..|...|.+++|+| ++.+|++|+.||.|++||.. .....+.. |...|.+++|+|++. |+++
T Consensus 128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 201 (313)
T 3odt_A 128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISC 201 (313)
T ss_dssp EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEE
T ss_pred EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEc
Confidence 999 6788889999999999999988 89999999999999999943 56777777 899999999999998 9999
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
+.||.|++||+ .+.. ++..+.+|... |.+++|+|++ .|++++.||.|++||+
T Consensus 202 ~~dg~i~i~d~------~~~~---~~~~~~~~~~~----i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 202 SNDGLIKLVDM------HTGD---VLRTYEGHESF----VYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp ETTSEEEEEET------TTCC---EEEEEECCSSC----EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred cCCCeEEEEEC------Cchh---hhhhhhcCCce----EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 99999999954 3333 47888999887 9999999999 5999999999999985
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.6e-28 Score=285.96 Aligned_cols=246 Identities=15% Similarity=0.166 Sum_probs=205.4
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.+.|++++|+|++. .+++++.||.|+||++..+.. .....+.+|.+.
T Consensus 9 ~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~--------------------------------~~~~~l~~h~~~ 55 (753)
T 3jro_A 9 NELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETH--------------------------------KLIDTLTGHEGP 55 (753)
T ss_dssp CCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEE--------------------------------EEEEEECCCSSC
T ss_pred cceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCC--------------------------------ccceeccCCcCc
Confidence 78999999999994 788888999999999753211 011235689999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCc--eeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECC
Q 005235 497 VSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKL--SHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 497 V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~--~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~ 568 (707)
|.+++|+++ |++|++++.|| .|++||+.++. .. ..+ .|...|.+++|+|+ +.+|++++ ||.|++||+.
T Consensus 56 V~~l~~s~~~~~~~l~s~s~Dg---~I~vwd~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 56 VWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEECCTTSCSEEEEEETTS---CEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred eEEEEecCCCCCCEEEEEeCCC---eEEEEECCCCccccc-ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 999999988 99999999998 99999999886 33 445 78999999999999 99999998 8999999998
Q ss_pred CC--eEEEEEeCCCCCeEEEEEcC-------------CCCEEEEEECCCcEEEEECCCCC---cceEEeecCCCCEEEEE
Q 005235 569 KQ--RLIKKLETGLKEVSSIAIHP-------------AGDNLIVGSREGKLCWFDMDLSS---KPYRVLKCHPKDITNVA 630 (707)
Q Consensus 569 ~~--~~~~~l~~~~~~I~sl~~sp-------------dg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~va 630 (707)
++ .....+.+|...|.+++|+| ++.+|++|+.||.|++||++.+. .+...+.+|...|++++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 76 34456778889999999999 58999999999999999998764 45567889999999999
Q ss_pred EcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 631 FHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 631 fspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|+|+ +.+|++|+.||+|+||+..... ......+....+|... |++++|+|++.+|++++.||.|++|++
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~~~~----v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQ----GPWKKTLLKEEKFPDV----LWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSS----SCCBCCBSSSSCCSSC----CCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCC----CcceeEEeccCCCCCc----eEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 9999 8999999999999999765321 1111123334556665 999999999999999999999999985
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=271.63 Aligned_cols=256 Identities=10% Similarity=0.069 Sum_probs=202.9
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc--eEEeccC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD--GIRLRHF 494 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~--~~~~~h~ 494 (707)
...|.+|+|+||| ..+++++.|++|+ ++..+. .+.+|...+.++.|+ .+|.+..|+...... .....|.
T Consensus 15 ~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~-~l~gh~~~v~~V~Fs-----Pdg~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T 2j04_A 15 EDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAK-DINCNSKNLFHVKEF-----PLEFENKLDFELAQQNGLLNSQPV 85 (588)
T ss_dssp SSSSCCEEECTTS-CEEEECSSSEEEE--EECCCS-CCSSBGGGTEEEEEE-----CCCCCCTTTTSCCCSSCSSTTSCS
T ss_pred hccEEEEEECCCC-CEEEEEcCCceee--cccccc-eecCCCccEEEEEEC-----CCCCcceEEEEeCCCceEeecCCC
Confidence 6789999999999 4677778899999 766654 346888888888874 233444444443221 1233568
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC-----CeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG-----LPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~-----~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
..|.+++|||+|.+||+++.|| .|+||+... .. ..+.+.. .|.+++|||+|++|++|+ ||+|+|||+.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg---~V~iwd~~~--~l-~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG---NVSVFKDNK--ML-TNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS---CEEEEETTE--EE-EECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCC---cEEEEeCCc--ee-eeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 8999999999999999999999 999999544 22 3344333 599999999999999999 8999999999
Q ss_pred CCe-------EEEEE----eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--ceEEe-ecCCCCEEEEEEcCC
Q 005235 569 KQR-------LIKKL----ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--PYRVL-KCHPKDITNVAFHRS 634 (707)
Q Consensus 569 ~~~-------~~~~l----~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--~~~~l-~~h~~~I~~vafspd 634 (707)
++. .+.++ .+|..+|.+++|+|+| |++++.|+.|++||+..+.. ..+++ .+|...|.+|+|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 875 46777 5566799999999999 88899999999999987632 34567 4788999999999
Q ss_pred CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEE--cCCCCEEEEEeCCCcEEEEeC
Q 005235 635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKF--HPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~f--spdg~~L~s~g~Dg~IrlWdl 707 (707)
+..||+++ +++|++|+. .... +..+. ||... |.+++| +|++..|++++.||+ ++|.+
T Consensus 236 g~~LASa~-~~tIkLWd~------~~~~----~~~~~~gh~~~----V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDL------KNYS----ISSLKTGSLEN----FHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp TTEEEEEC-SSEEEEEET------TTTE----EEEEECSCCSC----CCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred CCEEEEEe-CCeEEEEEC------CCCe----EEEEEcCCCce----EEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 68999998 699999954 3332 22333 89887 999999 999999999999999 99974
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=2.3e-26 Score=240.75 Aligned_cols=271 Identities=14% Similarity=0.195 Sum_probs=211.7
Q ss_pred cccCCCCCccCC--hhhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCC
Q 005235 296 ESYNPSLEYIPT--QEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKP 373 (707)
Q Consensus 296 ~synP~ge~L~s--~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp 373 (707)
-+|||++ +|+. ++.++.|+ ...+..++.+.. .+|...+..+.++|..
T Consensus 31 l~WS~~~-~lAvg~D~tV~iWd-----------~~tg~~~~~~~~-----~~~~~~V~~v~~~~~~-------------- 79 (318)
T 4ggc_A 31 VDWSSGN-VLAVALDNSVYLWS-----------ASSGDILQLLQM-----EQPGEYISSVAWIKEG-------------- 79 (318)
T ss_dssp EEECTTS-EEEEEETTEEEEEE-----------TTTCCEEEEEEC-----CSTTCCEEEEEECTTS--------------
T ss_pred EEECCCC-EEEEEeCCEEEEEE-----------CCCCCEEEEEEe-----cCCCCeEEEEEECCCC--------------
Confidence 3688876 6765 44555565 334444444421 2233344677787665
Q ss_pred CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235 374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE 452 (707)
Q Consensus 374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~ 452 (707)
.++++|+.||+|+||++.+++++..+.. ...+.++.+.+. .+++++.++.+.+|+......
T Consensus 80 ---------------~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 80 ---------------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp ---------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSC
T ss_pred ---------------CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC---EEEEEecCCceEeeecCCCce
Confidence 4899999999999999999999999887 666776666543 588888899999998655421
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
....+.+|...+.++.|+++|.+|++++.|+ .|+|||+.+++..
T Consensus 142 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 142 ---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPSAPGEGG 185 (318)
T ss_dssp ---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEESSCBTTB
T ss_pred ---------------------------------eEEEEcCccCceEEEEEcCCCCEEEEEecCc---ceeEEECCCCccc
Confidence 1123568999999999999999999999998 9999999876543
Q ss_pred e---eee-ccCCCeEEEEEeCCCCEEE-EE--e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--CCC
Q 005235 533 R---IPF-KLHGLPVSSVFHPTRSIFF-VS--T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--REG 602 (707)
Q Consensus 533 ~---~~~-~~~~~V~~v~fspd~~~l~-v~--s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~Dg 602 (707)
. ... .+.+.|.+++++|.+..++ ++ + +++|++||........... +...+.++.|+|++..+++++ .|+
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCC
Confidence 1 222 6778999999999766443 33 3 6999999999888776655 557899999999999988765 799
Q ss_pred cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.|++||+.++ +++.++.+|...|++++|+|++++|||||.||+|+||++.
T Consensus 265 ~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 265 QLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9999999987 7899999999999999999999999999999999999653
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=9.4e-28 Score=265.66 Aligned_cols=245 Identities=13% Similarity=0.152 Sum_probs=189.7
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...|+||+|+|.....|++++.||.|+|||+.++.... .....+|.+.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~--------------------------------~~~~~gH~~~ 166 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT--------------------------------FIKGIGAGGS 166 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE--------------------------------EECCCSSSCC
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee--------------------------------EEEccCCCCC
Confidence 56799999999654567788899999999987653210 0113479999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
|++|+|+| ++.+|++++.|+ +|+|||+.+.... ... .+...+.+++|+|++.+|++|+ ||.|++||+.. +
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~ 241 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEG---TTRLQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K 241 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSS---CEEEEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C
T ss_pred EEEEEEeCCCCCEEEEEeCCC---EEEEeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c
Confidence 99999998 689999999998 9999999876554 322 3345678999999999999998 89999999864 5
Q ss_pred EEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCc--ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSK--PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~--~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
.+..+.+|...|++++|+|++. +|++|+.|+.|++||++.... .+....+|...|++++|+|+|.+|++|+.||+|+
T Consensus 242 ~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence 5677889999999999999986 788999999999999987532 2233467999999999999999999999999999
Q ss_pred EEecccccCCCCCCcccceEEeeCCCCCC--CCCeeEEEEcCCCCEEEEEe------------CCCcEEEEeC
Q 005235 649 VFHGMVYSDLNQNPLIVPLEILRGHTSSN--GRGVMDCKFHPRQPWLFTAG------------ADSVIRLYCH 707 (707)
Q Consensus 649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~--~~gV~~l~fspdg~~L~s~g------------~Dg~IrlWdl 707 (707)
||++. +... ...+.+|.... ...+..+.|+|++.++++++ .+++|++||+
T Consensus 322 iwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 322 VYSAS------QWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp EEESS------SSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred EEECC------CCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 99654 3222 34455553321 11245567888877777664 2357999974
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.5e-27 Score=257.57 Aligned_cols=239 Identities=15% Similarity=0.199 Sum_probs=193.5
Q ss_pred EEEEEccCCCccEE-EEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235 421 QYVAWNPLPELPVL-AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS 499 (707)
Q Consensus 421 ~~v~~spdg~~~ll-a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~ 499 (707)
..++++|+.. .++ +++.+|.|.||++....... .....+.+|.+.|.+
T Consensus 38 ~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~------------------------------~~~~~~~~h~~~V~~ 86 (402)
T 2aq5_A 38 GFCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVD------------------------------KNVPLVCGHTAPVLD 86 (402)
T ss_dssp CSEEECSSEE-EEEBCCSSSCCEEEEETTCCEECC------------------------------TTCCCBCCCSSCEEE
T ss_pred CcEEECCCeE-EEEEEEcCCCEEEEEECccCCCCC------------------------------CCCceEecCCCCEEE
Confidence 4578888872 233 35678899999875431110 011124589999999
Q ss_pred EEEcC-CCCEEEEEeCCCCccEEEEEECCCC-------ceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECC
Q 005235 500 VEWHR-RGDYLSTVMPAGESRAIFMHQLSKK-------LSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 500 v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~ 568 (707)
++|+| ++.+|++++.|+ .|+||++.++ ... ..+ .|...|.+++|+|++ .+|++++ |+.|++||+.
T Consensus 87 ~~~~p~~~~~l~s~s~dg---~v~vw~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 87 IAWCPHNDNVIASGSEDC---TVMVWEIPDGGLVLPLREPV-ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp EEECTTCTTEEEEEETTS---EEEEEECCTTCCSSCBCSCS-EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred EEeCCCCCCEEEEEeCCC---eEEEEEccCCCCccccCCce-EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 99999 999999999998 9999999987 334 566 899999999999998 6888888 9999999999
Q ss_pred CCeEEEEE--eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCC-EEEEEEcCCCCEEEEE---
Q 005235 569 KQRLIKKL--ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKD-ITNVAFHRSYPLFASC--- 641 (707)
Q Consensus 569 ~~~~~~~l--~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~-I~~vafspdg~llaSg--- 641 (707)
+++.+..+ ..|...|.+++|+|+|.+|++|+.||.|++||++++ .++..+ .+|... +.+++|+|++.+|++|
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence 99999999 789999999999999999999999999999999987 677777 788776 8999999999999999
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
+.|+.|+|||+. .... ++.... .|... |.+++|+|++.+|++++ .||.|++|++
T Consensus 242 ~~d~~i~iwd~~------~~~~--~~~~~~~~~~~~----v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 242 MSERQVALWDTK------HLEE--PLSLQELDTSSG----VLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp TCCEEEEEEETT------BCSS--CSEEEECCCCSS----CEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred CCCceEEEEcCc------cccC--CceEEeccCCCc----eeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 799999999654 2222 122222 34444 99999999999997554 7999999984
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.2e-26 Score=249.77 Aligned_cols=265 Identities=12% Similarity=0.101 Sum_probs=213.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
.+.++++++.+++|++||+.+++++..+.. .+.|.+++|+|++ ..+++++.++.|++|++.++..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~-------- 203 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAY-------- 203 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCE--------
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceE--------
Confidence 667888889999999999999998875432 5689999999998 3566666789999999765421
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLH 539 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~ 539 (707)
...+..|...+.+++|+|+|.++++++ .++ .|.+||+.++... ..+...
T Consensus 204 --------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~-~~~~~~ 253 (433)
T 3bws_A 204 --------------------------KATVDLTGKWSKILLYDPIRDLVYCSNWISE---DISVIDRKTKLEI-RKTDKI 253 (433)
T ss_dssp --------------------------EEEEECSSSSEEEEEEETTTTEEEEEETTTT---EEEEEETTTTEEE-EECCCC
T ss_pred --------------------------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCC---cEEEEECCCCcEE-EEecCC
Confidence 112346788999999999999886555 666 9999999988776 666556
Q ss_pred CCeEEEEEeCCCCEEEEEe---------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEC
Q 005235 540 GLPVSSVFHPTRSIFFVST---------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNL-IVGSREGKLCWFDM 609 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s---------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl 609 (707)
+.+.+++|+|++.+|++++ |+.|++||+.+++.+..+. +...+.+++|+|+|+.| ++++.++.|.+||+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 6799999999999988876 5799999999998877663 44578999999999755 66688999999999
Q ss_pred CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC---------------CCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD---------------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHT 674 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~---------------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~ 674 (707)
.++ ++...+. +...+.+++|+|++++|++++. ||.|++||. .+.. .+..+.++.
T Consensus 333 ~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~------~~~~---~~~~~~~~~ 401 (433)
T 3bws_A 333 KEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT------TTDT---VKEFWEAGN 401 (433)
T ss_dssp TTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET------TTTE---EEEEEECSS
T ss_pred CCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC------CCCc---EEEEecCCC
Confidence 876 6666665 6788999999999998888776 579999954 3333 255566543
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235 675 SSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLYCH 707 (707)
Q Consensus 675 ~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWdl 707 (707)
. +.+++|+|++++|++++. |++|++|++
T Consensus 402 -~----~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 402 -Q----PTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp -S----EEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred -C----CceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 3 999999999999998875 999999985
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=257.28 Aligned_cols=272 Identities=8% Similarity=0.008 Sum_probs=197.2
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC---chh--cccccceeeeccc--------ccccCCCCc--------
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN---EEE--QRRVKDLLHVETP--------TAPDDNMAS-------- 476 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~---~~~--~~~~~~v~~~~~~--------~~~~~~d~~-------- 476 (707)
.++.+|+|+|+| .+++++.++.|.+|++.++. ... ...........+. +.....+..
T Consensus 5 ~p~~~v~~s~dg--~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDG--SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSS--SEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCC--CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 578899999999 47778889999999998876 210 0000000000000 000000000
Q ss_pred -E--EEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECC--CCceeeeee---ccCCCeEEEEE
Q 005235 477 -I--VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLS--KKLSHRIPF---KLHGLPVSSVF 547 (707)
Q Consensus 477 -i--~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~--~~~~~~~~~---~~~~~V~~v~f 547 (707)
+ ..|..... ......|.+.|.+++|+|+|++| ++++.|+ .|+||++. ++... ..+ .+...|.+++|
T Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg---~v~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 83 SIKRTAAKVPSP-GLGAPPIYSYIRNLRLTSDESRLIACADSDK---SLLVFDVDKTSKNVL-KLRKRFCFSKRPNAISI 157 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGT---EEEEEEECSSSSSCE-EEEEEEECSSCEEEEEE
T ss_pred cccccCccccCC-CCCCCccCCceEEEEEcCCCCEEEEEECCCC---eEEEEECcCCCCcee-eeeecccCCCCceEEEE
Confidence 0 00000000 00123677889999999999996 8888888 99999998 67665 555 55688999999
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCeEEE----EEeCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEECCCCCcceEE-
Q 005235 548 HPTRSIFFVST-KKNIRVYDLLKQRLIK----KLETGLKEVSSIAIHPA---GDNLIVGSREGKLCWFDMDLSSKPYRV- 618 (707)
Q Consensus 548 spd~~~l~v~s-dg~I~iwDl~~~~~~~----~l~~~~~~I~sl~~spd---g~~L~sGs~Dg~I~vwDl~~~~~~~~~- 618 (707)
+|++.+|++++ ++.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|+.|++||+.++ .++..
T Consensus 158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~ 236 (450)
T 2vdu_B 158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW 236 (450)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE
T ss_pred cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee
Confidence 99999999998 8999999998876443 67788899999999999 999999999999999999877 55555
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC---------------------CCC
Q 005235 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT---------------------SSN 677 (707)
Q Consensus 619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~---------------------~~~ 677 (707)
+.+|...|++++|+ ++.+|++|+.|++|+|||+. ++.. +..+..+. ...
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK------TGKN---LSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT------TCCE---EEEEECHHHHGGGCCTTSBC----------CB
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC------CCcE---eeeecchhhhhhhhhhcccccccccccccccc
Confidence 66899999999999 99999999999999999553 3332 34443221 011
Q ss_pred CCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 678 GRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 678 ~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
...|.+++|+|++++|++++ .|+.|+||++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 23499999999999999999 8999999985
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.2e-26 Score=256.55 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=198.0
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCC----------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVES----------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE 452 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~t----------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~ 452 (707)
.|....++++|+.||.|+||++.+ +..+..+.. ...|.+|+|+|++...|++++.++.|++|++..+..
T Consensus 137 ~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 216 (430)
T 2xyi_A 137 MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216 (430)
T ss_dssp ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB
T ss_pred CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC
Confidence 344457999999999999999986 566666666 788999999999844688888899999999876422
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCc-
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKL- 530 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~- 530 (707)
... .+ .......+|...|.+++|+| ++.+|++++.++ .|++||+.+..
T Consensus 217 ~~~-----~~----------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~~~ 266 (430)
T 2xyi_A 217 EHR-----VI----------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNNNT 266 (430)
T ss_dssp GGG-----EE----------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCSCS
T ss_pred CCc-----ee----------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCCCC
Confidence 100 00 00123458999999999999 778999999988 99999999873
Q ss_pred --eeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCc
Q 005235 531 --SHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGK 603 (707)
Q Consensus 531 --~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~ 603 (707)
.. ..+ .|...|.+++|+|++. +|++++ |+.|++||+++ +.++..+..|...|++++|+|++. +|++|+.||.
T Consensus 267 ~~~~-~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 267 SKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp SSCS-EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred Ccce-eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 33 556 8889999999999987 577777 89999999998 567888999999999999999995 7999999999
Q ss_pred EEEEECCCCC-------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 604 LCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 604 I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
|++||+.... .++..+.+|...|++++|+|+++ +|++++.||.|+||++.
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 9999998622 56677889999999999999999 99999999999999764
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.1e-26 Score=256.67 Aligned_cols=263 Identities=17% Similarity=0.210 Sum_probs=215.3
Q ss_pred ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235 297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK 374 (707)
Q Consensus 297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~ 374 (707)
++.+++.+|++++. |..+ |.......++.+.++...| ..+.+
T Consensus 138 ~~~~d~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~~v-------~~l~~------------------- 181 (435)
T 1p22_A 138 CLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHTGSV-------LCLQY------------------- 181 (435)
T ss_dssp EEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCSSCE-------EEEEC-------------------
T ss_pred EEEECCCEEEEEeC----------CCeEEEEeCCCCeEEEEEcCCCCcE-------EEEEE-------------------
Confidence 57778999998654 4444 4344455555555554443 33322
Q ss_pred CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235 375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453 (707)
Q Consensus 375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~ 453 (707)
++.++++|+.||+|+|||+.+++++..+.. .+.|.+++|+++ .+++++.|+.|++||+.++...
T Consensus 182 ------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 182 ------------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp ------------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCC
T ss_pred ------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCc
Confidence 235899999999999999999999998887 789999999854 5999999999999998765321
Q ss_pred hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
. ......+|...|.+++| ++++|++++.|+ .|++||+.++...
T Consensus 247 ~-------------------------------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg---~i~vwd~~~~~~~- 289 (435)
T 1p22_A 247 T-------------------------------LRRVLVGHRAAVNVVDF--DDKYIVSASGDR---TIKVWNTSTCEFV- 289 (435)
T ss_dssp E-------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTTCCEE-
T ss_pred e-------------------------------eeeEecCCCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCcCcEE-
Confidence 0 01235589999999999 789999999998 9999999999887
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
..+ .|...|.+++|+ +.+|++|+ |+.|++||+.+++++..+.+|...|.+++| ++.+|++|+.||.|++||+..
T Consensus 290 ~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 290 RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 778 889999999995 67888888 999999999999999999999999999999 688999999999999999975
Q ss_pred CC--------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 612 SS--------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 612 ~~--------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+. .++..+.+|...|++++| ++.+|++|+.||+|+||++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 42 168889999999999999 77889999999999999553
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-27 Score=266.12 Aligned_cols=283 Identities=7% Similarity=0.016 Sum_probs=201.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
++.+++|+|.|++|+ |..+++++. .+...|.+|+|+|+| .++.+.+|+..........+...+.+++|
T Consensus 26 DG~~iASas~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~~~~V~~vaw 93 (588)
T 2j04_A 26 DGTLYLTTFPDISIG--QPKYAKDIN--CNSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQPVCYPRVCKP 93 (588)
T ss_dssp TSCEEEECSSSEEEE--EECCCSCCS--SBGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred CCCEEEEEcCCceee--cccccceec--CCCccEEEEEECCCC--------CcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence 345888888888888 766665551 236778888888877 34444455433222222234666777777
Q ss_pred c-----ccccCCCCcEEEEecCCccceEEeccCC-----CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce-----
Q 005235 467 P-----TAPDDNMASIVSWLQHDKLDGIRLRHFK-----MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS----- 531 (707)
Q Consensus 467 ~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~----- 531 (707)
+ +++++.++.+++|+..+ ....+. |.. .|.+++|||+|++||+|+.|| +|+||++.++..
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG---tVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG---ELQFFSIRKNSENTPEF 168 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS---EEEEEECCCCTTTCCCC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC---EEEEEECCCCccccccc
Confidence 6 77777888888887544 222233 554 599999999999999999999 999999998753
Q ss_pred -eeeee-----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe---EEEEEe-CCCCCeEEEEEcCCCCEEEEEECC
Q 005235 532 -HRIPF-----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR---LIKKLE-TGLKEVSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 532 -~~~~~-----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~---~~~~l~-~~~~~I~sl~~spdg~~L~sGs~D 601 (707)
....+ +|.+.|.+++|+|+| +++++.|++|++||+..+. ...++. +|...|.+++|+ |..||+++ +
T Consensus 169 i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence 11332 456799999999999 4444449999999998876 345674 677889999999 68999987 6
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecccccCCCCCCcc---------------
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAF--HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLI--------------- 664 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~--------------- 664 (707)
+.|++||+..+ .......+|...|.+++| +|++..|++++.||+ +||...... ......+
T Consensus 245 ~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~-~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 245 GYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH-VTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp SEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE-EECCCSSHHHHHHHHHHTTTTT
T ss_pred CeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE-ECCCceEEEEcCCEEEEEECCC
Confidence 99999999865 432333389999999999 999999999999999 999763211 1100000
Q ss_pred cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 665 ~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
.++..+.+ . ..|.+++|||+|+.||+++.
T Consensus 322 ~~l~~~~~-~----~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 322 NEFNNYET-T----LVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TSSSSSCC-E----EEEEEEEECTTSSEEEEEEE
T ss_pred Cceeeecc-c----eEEEEEEECCCCCEEEEEEe
Confidence 01122222 2 23999999999999999874
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=9.5e-27 Score=254.43 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=182.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC-------C---eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 386 VACYLEYKGSTDGTVRIWEVES-------G---RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~t-------g---~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
....+++.| .|+.|++|+... + ..+..+.....+.++.|++.. .....+.++.+.+-....
T Consensus 29 ~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------ 99 (393)
T 4gq1_A 29 SCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSC--SYSENLHDGDGNVNSSPV------ 99 (393)
T ss_dssp GGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTC--EEECC----------CCE------
T ss_pred CCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCc--cccccccCCCcceeecCC------
Confidence 334455555 577899997532 1 233344446778888887654 111111111111000000
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccce------EEeccCCCeEEEEEcC--------CCCEEEEEeCCCCccEE
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG------IRLRHFKMVSSVEWHR--------RGDYLSTVMPAGESRAI 521 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~------~~~~h~~~V~~v~~sp--------~g~~lat~s~dg~~~~V 521 (707)
....+++++.|++|++|+....... .+.+|.+.|.+|+|+| +|.+||+++.|+ +|
T Consensus 100 --------~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~---tv 168 (393)
T 4gq1_A 100 --------YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC---TL 168 (393)
T ss_dssp --------EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS---EE
T ss_pred --------CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC---eE
Confidence 0000345556666666666544321 1458999999999998 789999999998 99
Q ss_pred EEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEE----------------------
Q 005235 522 FMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKL---------------------- 576 (707)
Q Consensus 522 ~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l---------------------- 576 (707)
+|||+.++... ..+ .+...|.+++|+|++. +|++++ |++|++||+.+++....+
T Consensus 169 ~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEGPI-LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTEEE-EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCcee-eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 99999888776 445 8999999999999875 677877 999999999887543322
Q ss_pred ---eCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc------------------C-
Q 005235 577 ---ETGLKEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH------------------R- 633 (707)
Q Consensus 577 ---~~~~~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs------------------p- 633 (707)
.+|...+.++.|+ |+|..|++++.|+.+++||+..+ .....+..|...+..+.+. |
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 3466678888886 89999999999999999999876 4455565565555444333 3
Q ss_pred -CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 634 -SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 634 -dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
++.++++|+.||+|+|||+. +... +..+.+|... |.+++|||+|++||+++.+| +.+|.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~------~~~~---~~~~~~~~~~----V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTY------EKDS---NSIPIQLGMP----IVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETT------CTTC---CEEEEECSSC----EEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred CCCEEEEEECCCCEEEEEECC------CCcE---EEEecCCCCc----EEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 23367788899999999643 3332 5566778777 99999999999999999777 44443
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2.3e-26 Score=241.86 Aligned_cols=313 Identities=13% Similarity=0.126 Sum_probs=201.8
Q ss_pred CCCCCCCCcc-----ccCCCCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235 287 PKPKLPGHEE-----SYNPSLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR 358 (707)
Q Consensus 287 pk~~lpgh~~-----synP~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr 358 (707)
....+.||.. +|+|++.+|++.+ .++.|+..... .....+..+.+ |...+..+.|+|.
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~-------~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRA-------HDSSIVAIDWASP 68 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEEC-------CSSCEEEEEECCG
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------Ccceecceecc-------CCCcEEEEEEcCC
Confidence 4456778887 5999999999854 45566532211 00112233333 3344477777763
Q ss_pred cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC---------eEEEEEec-CCcEEEEEEccC
Q 005235 359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG---------RCLRVLEI-GEAIQYVAWNPL 428 (707)
Q Consensus 359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg---------~~l~~l~~-~~~V~~v~~spd 428 (707)
. ++.++++|+.||+|+|||+.++ +++..+.. .+.|.+++|+|+
T Consensus 69 ~---------------------------d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 121 (351)
T 3f3f_A 69 E---------------------------YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121 (351)
T ss_dssp G---------------------------GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred C---------------------------CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCC
Confidence 1 2358999999999999999987 56777765 789999999999
Q ss_pred --CCccEEEEEeCCeEEEEECCCCCchhcccc-cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC
Q 005235 429 --PELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR 505 (707)
Q Consensus 429 --g~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~ 505 (707)
+ ..+++++.|+.|++||+.++........ ..+.. .......|...+.+++|+|+
T Consensus 122 ~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 122 HLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV----------------------LSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp GGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES----------------------CSCCCSSCSCCCEEEEECCC
T ss_pred CCC-cEEEEecCCCcEEEecCCChHHhccccccccccc----------------------cccccCCcccceeEEEeccC
Confidence 7 4788889999999999887643211000 00000 00012367889999999997
Q ss_pred ---CCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCCC----CEEEEEe-CCeEEEEECCCCeEEEE
Q 005235 506 ---GDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPTR----SIFFVST-KKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 506 ---g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd~----~~l~v~s-dg~I~iwDl~~~~~~~~ 575 (707)
+.+|++++.++ .+.+|+...+... ...+ .|.+.|.+++|+|++ .+|++++ |+.|++||+..+.....
T Consensus 179 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 179 RFSPEKLAVSALEQ---AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp SSSCCEEEEEETTE---EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred CCCCcEEEEecCCC---cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 99999999988 8888887776652 1455 789999999999998 7888888 89999999987755544
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 576 LETGLKEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 576 l~~~~~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
...+...+.....++....++.+.. ...+.+|+.... .++..+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp -----------------------------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 4444344445555555555544433 344555555444 67788899999999999999999999999999999995
Q ss_pred cccccCCCCCCcccceEEeeCC
Q 005235 652 GMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
+ .......++..+..|
T Consensus 335 ~------~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 335 A------TYSNEFKCMSVITAQ 350 (351)
T ss_dssp E------CTTSCEEEEEEEC--
T ss_pred c------CcCcchhheeehccc
Confidence 4 444454556655544
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.8e-26 Score=241.25 Aligned_cols=261 Identities=16% Similarity=0.126 Sum_probs=205.3
Q ss_pred EEeCCCCeEEEEEec-CCcEEEEEEccCC--CccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235 402 IWEVESGRCLRVLEI-GEAIQYVAWNPLP--ELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV 478 (707)
Q Consensus 402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg--~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~ 478 (707)
.|+....+.+..+.. .+.|++|+|+|++ ...|++++.|+.|++|++.+....
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------------------------- 77 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT------------------------- 77 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------------
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------------
Confidence 344555666666655 7899999999993 247888889999999998652110
Q ss_pred EEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE--eCCCCEEEE
Q 005235 479 SWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF--HPTRSIFFV 556 (707)
Q Consensus 479 iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f--spd~~~l~v 556 (707)
....+.+|...|.+++|+|++++|++++.|+ .|++||+.++... ..+.|...|.+++| +|++.+|++
T Consensus 78 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 78 -------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK---TAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp -------EEEEEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEE
T ss_pred -------eEEEeccccCCEEEEEECcCCCEEEEEcCCC---cEEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEE
Confidence 0123557999999999999999999999998 9999999998876 54489999999999 899999999
Q ss_pred Ee-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCC
Q 005235 557 ST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRS 634 (707)
Q Consensus 557 ~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspd 634 (707)
++ |+.|++||+.+++++..+..+ ..+.++.+. +..+++++.++.+.+|++.........+. .+...+.++++.++
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCcEEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 88 999999999999988888876 467777766 45899999999999999987654444443 23456677777666
Q ss_pred CCE----EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC--------CCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 635 YPL----FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG--------RGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 635 g~l----laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~--------~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
... +++|+.||.|+||++ .......++..+.+|..... ..|.+++|+|++.+|++++.||.|
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i 297 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYI------NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEES------SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred CCCCCCeEEEecCCCcEEEEec------CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeE
Confidence 554 999999999999955 33333345677888865100 029999999999999999999999
Q ss_pred EEEeC
Q 005235 703 RLYCH 707 (707)
Q Consensus 703 rlWdl 707 (707)
++||+
T Consensus 298 ~iwd~ 302 (368)
T 3mmy_A 298 SFWDK 302 (368)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99985
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-27 Score=276.49 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=193.8
Q ss_pred cEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.++++|+.||+|+||++. +++++..+.. .+.|.+++|+|+ + ..+++++.|+.|++|++.++...
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~---------- 90 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWS---------- 90 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEE----------
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCccc----------
Confidence 489999999999999998 5567777765 789999999988 6 47888999999999997654210
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH 539 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~ 539 (707)
.......|...|.+++|+|+ |.+|++++.|| .|++||+....... ..+ .+.
T Consensus 91 ----------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 91 ----------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEEEECCS
T ss_pred ----------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeEeecCC
Confidence 11234579999999999999 99999999998 99999998874331 344 888
Q ss_pred CCeEEEEEeC-------------CCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCC---CCEEEEE
Q 005235 540 GLPVSSVFHP-------------TRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPA---GDNLIVG 598 (707)
Q Consensus 540 ~~V~~v~fsp-------------d~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spd---g~~L~sG 598 (707)
..|.+++|+| ++.+|++|+ ||.|++||+.++ .+...+.+|...|++++|+|+ |.+|++|
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 9999999999 588899888 999999999876 677788899999999999999 8999999
Q ss_pred ECCCcEEEEECCCCCc----ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 599 SREGKLCWFDMDLSSK----PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~~----~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
+.||.|++||+..+.. .......|...|++++|+|++.+|++|+.||.|+||++.
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 9999999999987531 233344688899999999999999999999999999876
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.9e-24 Score=233.99 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=182.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
++++++.|++|++||+.+++++..+.....|.+++|+|++. .+++++ .++.|.+||+.++..
T Consensus 46 l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~v~v~d~~~~~~---------------- 108 (391)
T 1l0q_A 46 VYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGK-QVYVTNMASSTLSVIDTTSNTV---------------- 108 (391)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEE----------------
T ss_pred EEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCC-EEEEEECCCCEEEEEECCCCeE----------------
Confidence 45788899999999999999999999888999999999994 455555 468999999766421
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF 547 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f 547 (707)
.....+...+.+++|+|+|++| ++++.++ .|.+||+.+++.. ..+.....+.+++|
T Consensus 109 -------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~~~~-~~~~~~~~~~~~~~ 165 (391)
T 1l0q_A 109 -------------------AGTVKTGKSPLGLALSPDGKKLYVTNNGDK---TVSVINTVTKAVI-NTVSVGRSPKGIAV 165 (391)
T ss_dssp -------------------EEEEECSSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEE-EEEECCSSEEEEEE
T ss_pred -------------------EEEEeCCCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCcEE-EEEecCCCcceEEE
Confidence 1122345678999999999988 5666666 9999999988776 66655567899999
Q ss_pred eCCCCEEEEE-e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCcceEEeecC
Q 005235 548 HPTRSIFFVS-T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 548 spd~~~l~v~-s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
+|++..|+++ . ++.|++||+.+++.+..+.. ...+.+++|+|+|.+|++++ .++.|++||+.++ +++..+..|
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~ 243 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG 243 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecC
Confidence 9999988654 4 79999999999988887765 46799999999999999988 6899999999877 677778776
Q ss_pred CCCEEEEEEcCCCCEE-EEEeCCCcEEEEecc
Q 005235 623 PKDITNVAFHRSYPLF-ASCSDDCTAYVFHGM 653 (707)
Q Consensus 623 ~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~ 653 (707)
. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 244 ~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 244 P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred C-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 5 58999999999866 677899999999653
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=240.67 Aligned_cols=196 Identities=10% Similarity=0.008 Sum_probs=154.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC---------CCceeeeee--ccCCCeEEEEEeC--CCCEEEEEe-C
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS---------KKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVST-K 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~---------~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~s-d 559 (707)
...|.++.|+|. +++++.|+ .|++|+.. +.... ..+ .+.+.|.+++|+| ++.+|++++ |
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~---~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d 148 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCN---RLLLLYPGNQITILDSKTNKVL-REIEVDSANEIIYMYGHNEVNTEYFIWADNR 148 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTT---EEEEEETTTEEEEEETTTCCEE-EEEECCCSSCEEEEECCC---CCEEEEEETT
T ss_pred cCCceeeeeCCc---eEEecCCC---eEEEEEccCceEEeecCCccee-EEeecCCCCCEEEEEcCCCCCCCEEEEEeCC
Confidence 356777888887 89999988 99999765 44433 333 6668899999999 999999988 9
Q ss_pred CeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCE
Q 005235 560 KNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPL 637 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~l 637 (707)
++|++||+.+++++..+.. +...|++++|+|+|.+|++|+.||.|++||++++......+.. |...|++++|+|++.+
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 9999999999988776644 4457999999999999999999999999999988444378888 9999999999999999
Q ss_pred EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235 638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM--DCKFHPRQPWLFTAGA-DSVIRLYCH 707 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~--~l~fspdg~~L~s~g~-Dg~IrlWdl 707 (707)
|+++++ ++|+|||++ +......+..+..|... +. +++|+|++++|++++. |+.|+||++
T Consensus 229 l~s~~~-~~v~iwd~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 229 MVVECD-QTVVCFDLR------KDVGTLAYPTYTIPEFK----TGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEES-SBEEEEETT------SSTTCBSSCCCBC---------CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeC-CeEEEEEcC------CCCcceeeccccccccc----ccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 999995 499999654 33332223333334433 44 6999999999999998 999999974
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=7.5e-25 Score=236.01 Aligned_cols=255 Identities=12% Similarity=0.049 Sum_probs=190.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-cccccceeeecc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-QRRVKDLLHVET 466 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-~~~~~~v~~~~~ 466 (707)
+.++++|+.+| ++||++.+++++...... .+..++|.++++..+++++.+++|++||+.++.... ..+...+.++.+
T Consensus 31 g~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~ 108 (355)
T 3vu4_A 31 QSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFL 108 (355)
T ss_dssp SSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEE
Confidence 35888888776 789999998877665543 478888998884333455677899999998875421 123445666655
Q ss_pred c--ccccCCCCcEEEEecCCc-cce-EEeccCCCeEEEEEcCCCCEEEEE--eCCCCccEEEEEECCCCc----------
Q 005235 467 P--TAPDDNMASIVSWLQHDK-LDG-IRLRHFKMVSSVEWHRRGDYLSTV--MPAGESRAIFMHQLSKKL---------- 530 (707)
Q Consensus 467 ~--~~~~~~d~~i~iW~~~~~-~~~-~~~~h~~~V~~v~~sp~g~~lat~--s~dg~~~~V~Iwdl~~~~---------- 530 (707)
. ......++.+++|++... ... .+.. ....+++++ .+++++ +.+| .|++||+.++.
T Consensus 109 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g---~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 109 SREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG---QIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT---CEEEEECCC------------
T ss_pred cCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc---EEEEEECCCCCcccccccccc
Confidence 5 222234788999999866 222 2222 445566776 677774 5666 99999999765
Q ss_pred ------eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCe-EEEEECCCCeEEEEEe-C-CCCCeEEEEEcCCCCEEEEEE
Q 005235 531 ------SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKN-IRVYDLLKQRLIKKLE-T-GLKEVSSIAIHPAGDNLIVGS 599 (707)
Q Consensus 531 ------~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~-I~iwDl~~~~~~~~l~-~-~~~~I~sl~~spdg~~L~sGs 599 (707)
.. ..+ .|.+.|.+++|+|++.+|++|+ |++ |++||+.+++++.++. + |...|.+++|+|+|.+|++|+
T Consensus 181 ~~~~~p~~-~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 181 QKAILGKG-VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp ------CC-EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred ccccCccc-EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 13 556 8999999999999999999999 898 9999999999999998 5 889999999999999999999
Q ss_pred CCCcEEEEECCCCCc-ceEEee---------------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 600 REGKLCWFDMDLSSK-PYRVLK---------------------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 600 ~Dg~I~vwDl~~~~~-~~~~l~---------------------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.|+.|++||+..... ....+. .+......++|++++.+|++++.||.+++|++.
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 999999999975421 111111 112234679999999999999999999999654
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.2e-25 Score=243.59 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=167.3
Q ss_pred CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-----ec-CCcEEEEEEcc--------CCCccEEEEEeCCeEEEE
Q 005235 380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVL-----EI-GEAIQYVAWNP--------LPELPVLAVSVGQDVLIL 445 (707)
Q Consensus 380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l-----~~-~~~V~~v~~sp--------dg~~~lla~s~d~~V~lw 445 (707)
.+..++....++++|+.|++|+|||+.++.+.... .+ .+.|++|+|+| ++ ..|++++.|++|+||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~W 171 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIW 171 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEE
Confidence 34457778889999999999999999998775432 22 78999999998 66 478888899999999
Q ss_pred ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEE
Q 005235 446 NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMH 524 (707)
Q Consensus 446 d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iw 524 (707)
|+.++.. ......|...|.+++|+|++. +|++++.|+ .|++|
T Consensus 172 d~~~~~~----------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~---~v~~w 214 (393)
T 4gq1_A 172 RLTDEGP----------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNG---NIRIF 214 (393)
T ss_dssp EEETTEE----------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTS---EEEEE
T ss_pred ECCCCce----------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCC---EEEEE
Confidence 9755421 123557899999999999875 799999998 99999
Q ss_pred ECCCCceeeee-------------------------e-ccCCCeEEEEEe-CCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235 525 QLSKKLSHRIP-------------------------F-KLHGLPVSSVFH-PTRSIFFVST-KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 525 dl~~~~~~~~~-------------------------~-~~~~~V~~v~fs-pd~~~l~v~s-dg~I~iwDl~~~~~~~~l 576 (707)
|+.++... .. . .+...+.++.|+ |++..|++++ |+++++||+..++....+
T Consensus 215 d~~t~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 215 DWTLNLSA-EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp ETTCCC-----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred ECCCCccc-ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence 99876543 11 1 355678889987 7999999998 899999999988777666
Q ss_pred eCCCCCeEEEEEcC--------------------CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235 577 ETGLKEVSSIAIHP--------------------AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 577 ~~~~~~I~sl~~sp--------------------dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ 636 (707)
..+...+..+.+.| ++.++++|+.||.|++||+.++ .+...+..|..+|++|+|||+|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSS
T ss_pred eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCC
Confidence 66555444443333 3346778889999999999987 66777788999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q 005235 637 LFASCSDDCTAYVFH 651 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd 651 (707)
+||+++++| +.+|.
T Consensus 373 ~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 373 HLAIATEGS-VLLTR 386 (393)
T ss_dssp EEEEEESSE-EEEEE
T ss_pred EEEEEeCCC-eEEEE
Confidence 999999877 55563
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.2e-24 Score=236.46 Aligned_cols=270 Identities=12% Similarity=0.133 Sum_probs=206.1
Q ss_pred ccCCCCcEEEEEe----CCC----cEEEEeC--CCCeEEEE--Eec-CCcEEEEEEccC--------------CCccEEE
Q 005235 383 PYPVACYLEYKGS----TDG----TVRIWEV--ESGRCLRV--LEI-GEAIQYVAWNPL--------------PELPVLA 435 (707)
Q Consensus 383 pfp~~~~~l~sgs----~Dg----tVrIWd~--~tg~~l~~--l~~-~~~V~~v~~spd--------------g~~~lla 435 (707)
+.+....++++|+ .|| +|+|||+ .+|+++.. +.. ...+.++++++. + ..++.
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~ 148 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAY 148 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEE
Confidence 3456667888886 568 9999999 99998744 544 455666666641 3 24666
Q ss_pred EEeC------CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE
Q 005235 436 VSVG------QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL 509 (707)
Q Consensus 436 ~s~d------~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l 509 (707)
++.+ +.|++||+. +.....+..|...|.+++|+|+|++|
T Consensus 149 ~s~~~~~~~~~~i~i~d~~-----------------------------------g~~~~~l~~~~~~v~~~~~Spdg~~l 193 (415)
T 2hqs_A 149 VVQTNGGQFPYELRVSDYD-----------------------------------GYNQFVVHRSPQPLMSPAWSPDGSKL 193 (415)
T ss_dssp EEECSSSSCCEEEEEEETT-----------------------------------SCSCEEEEEESSCEEEEEECTTSSEE
T ss_pred EEecCCCCccceEEEEcCC-----------------------------------CCCCEEEeCCCCcceeeEEcCCCCEE
Confidence 6554 466666653 33333466788999999999999999
Q ss_pred EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE-EEe-C--CeEEEEECCCCeEEEEEeCCCCCeEE
Q 005235 510 STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF-VST-K--KNIRVYDLLKQRLIKKLETGLKEVSS 585 (707)
Q Consensus 510 at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~-v~s-d--g~I~iwDl~~~~~~~~l~~~~~~I~s 585 (707)
++++.++....|++||+.++... ....+.+.+.+++|+|+|+.|+ +++ + ..|++||+.++++ ..+..+...+.+
T Consensus 194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 99998765569999999988764 3337788999999999999888 444 4 4599999998876 567778788999
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCC
Q 005235 586 IAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLN 659 (707)
Q Consensus 586 l~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~ 659 (707)
++|+|+|++|++++.+ + .|.+||+.++ . ...+..|...+.+++|+|+|++|++++.+ +.|++|+. .
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~------~ 343 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------A 343 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------T
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC------C
Confidence 9999999999988864 4 6777888765 3 45566777889999999999999888764 58999954 3
Q ss_pred CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeC
Q 005235 660 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS---VIRLYCH 707 (707)
Q Consensus 660 ~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg---~IrlWdl 707 (707)
++. +..+..|. . +.+++|+|+|++|++++.++ .|++|++
T Consensus 344 ~~~----~~~l~~~~-~----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 344 TGG----VQVLSSTF-L----DETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp TCC----EEECCCSS-S----CEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CCC----EEEecCCC-C----cCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 333 34455554 4 99999999999999988877 7999875
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=3e-23 Score=227.69 Aligned_cols=277 Identities=14% Similarity=0.156 Sum_probs=208.9
Q ss_pred ccccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCC
Q 005235 295 EESYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLK 372 (707)
Q Consensus 295 ~~synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~ll 372 (707)
.-+|+|.+.++++... +..+ |.+.....++.++. .....+...+..+.++|+.
T Consensus 127 ~~~~s~~~~~~~~~~~----------~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~v~~~~~~~~~------------- 181 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLE----------DEGMDVLDINSGQTVRLSPP--EKYKKKLGFVETISIPEHN------------- 181 (433)
T ss_dssp CCEESSSSEEEEEBTT----------SSSEEEEETTTCCEEEECCC--HHHHTTCCEEEEEEEGGGT-------------
T ss_pred EEEEeCCCeEEEEeCC----------CCeEEEEECCCCeEeeecCc--ccccccCCceeEEEEcCCC-------------
Confidence 4479997777766433 2222 33334444433221 0123444555667776554
Q ss_pred CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCC
Q 005235 373 PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLG 450 (707)
Q Consensus 373 p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~ 450 (707)
.++++++.|+.|++||+.+++++..+.. ...+.+++|+|++. .+++++ .++.|.+||+.++
T Consensus 182 ----------------~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 182 ----------------ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD-LVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp ----------------EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT-EEEEEETTTTEEEEEETTTT
T ss_pred ----------------EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC-EEEEEecCCCcEEEEECCCC
Confidence 4899999999999999999999988876 77899999999994 455555 6889999997654
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-----CccEEEEEE
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-----ESRAIFMHQ 525 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-----~~~~V~Iwd 525 (707)
.. .....+...+.+++|+|+|++|++++.+. .++.|.+||
T Consensus 245 ~~-----------------------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 245 LE-----------------------------------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EE-----------------------------------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred cE-----------------------------------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 21 01223345589999999999999888421 133999999
Q ss_pred CCCCceeeeeeccCCCeEEEEEeCCCCEEEEE-e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---
Q 005235 526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVS-T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR--- 600 (707)
Q Consensus 526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~-s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~--- 600 (707)
+.++... ..+.+.+.+.+++|+|+++.++++ + ++.|++||+.+++.+..+. +...+.+++|+|+|.+|++++.
T Consensus 290 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 290 MDKEKLI-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp TTTTEEE-EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred CCCCcEE-eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence 9988765 555666689999999999877655 4 8999999999999888876 5577999999999999998877
Q ss_pred ------------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235 601 ------------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG 652 (707)
Q Consensus 601 ------------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~ 652 (707)
||.|++||+.++ +.+..+.. ...+.+++|+|++++|++++ .|++|+||++
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 579999999876 67777775 45799999999999988877 4999999965
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.1e-22 Score=232.04 Aligned_cols=323 Identities=9% Similarity=0.023 Sum_probs=230.7
Q ss_pred ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235 297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK 374 (707)
Q Consensus 297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~ 374 (707)
.|+|++.++++... +..+ |.......+..++.... +..+.++|++
T Consensus 144 ~~~p~~~~~vs~~~----------d~~V~v~D~~t~~~~~~i~~g~~--------~~~v~~spdg--------------- 190 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----------AGQIALVDGDSKKIVKVIDTGYA--------VHISRMSASG--------------- 190 (543)
T ss_dssp CCCGGGEEEEEEGG----------GTEEEEEETTTCCEEEEEECSTT--------EEEEEECTTS---------------
T ss_pred ccCCCCEEEEEEcC----------CCeEEEEECCCceEEEEEecCcc--------cceEEECCCC---------------
Confidence 48999888877543 3333 44455556666642111 2356666655
Q ss_pred CCCCCCCcccCCCCcEEEEEeCCCcEEEEeC--CCCeEEEEEecCCcEEEEEEcc----CCCccEEEEE-eCCeEEEEEC
Q 005235 375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEV--ESGRCLRVLEIGEAIQYVAWNP----LPELPVLAVS-VGQDVLILNT 447 (707)
Q Consensus 375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~--~tg~~l~~l~~~~~V~~v~~sp----dg~~~lla~s-~d~~V~lwd~ 447 (707)
.++|+++.|++|++||+ .+++++.++.....+.+++|+| +|. .+++++ .+++|.+||.
T Consensus 191 --------------~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 191 --------------RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp --------------CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEET
T ss_pred --------------CEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEec
Confidence 48999999999999999 8999999999888899999999 994 566665 5899999998
Q ss_pred CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEE
Q 005235 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQ 525 (707)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwd 525 (707)
.++... ..+...+.......-| ...+.++.+++++..+++. ..++ .|.+||
T Consensus 256 ~t~~~~------------------------~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g---~i~vvd 308 (543)
T 1nir_A 256 ETLEPK------------------------QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG---KVLLVN 308 (543)
T ss_dssp TTCCEE------------------------EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT---EEEEEE
T ss_pred cccccc------------------------eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC---eEEEEE
Confidence 765321 1111100000000012 3378999999988766544 4444 999999
Q ss_pred CCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCC-CCEEEE
Q 005235 526 LSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET----GLKEVSSIAIHPA-GDNLIV 597 (707)
Q Consensus 526 l~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spd-g~~L~s 597 (707)
+.+..... ..+.+...+.+++|+|++++|++++ +++|.+||+.+++++..+.. |.+....+ ++|+ |..+++
T Consensus 309 ~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 309 YKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp CTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred ecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence 98865541 1336667788999999999888775 79999999999999998875 43333333 5787 566666
Q ss_pred EE-CCCcEEEEECCCC------CcceEEeecCCCCEEEEEEcCCCCEEEEEe-------CCCcEEEEecccccCCCCCCc
Q 005235 598 GS-REGKLCWFDMDLS------SKPYRVLKCHPKDITNVAFHRSYPLFASCS-------DDCTAYVFHGMVYSDLNQNPL 663 (707)
Q Consensus 598 Gs-~Dg~I~vwDl~~~------~~~~~~l~~h~~~I~~vafspdg~llaSgs-------~Dg~I~Vwd~~~~~Dl~~~~~ 663 (707)
++ .|++|.+||+++. .++++++..|...+..|+|||++++|++++ .+++|.|||+... ..
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~------~~ 461 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL------DA 461 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT------TS
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC------CC
Confidence 65 5799999999871 378899999998899999999999999987 2789999966532 22
Q ss_pred ccceEEe--------eCCCCCCCCCeeEEEEcCCCCEEEEEe-----CCCcEEEEeC
Q 005235 664 IVPLEIL--------RGHTSSNGRGVMDCKFHPRQPWLFTAG-----ADSVIRLYCH 707 (707)
Q Consensus 664 ~~pl~~l--------~gh~~~~~~gV~~l~fspdg~~L~s~g-----~Dg~IrlWdl 707 (707)
. ...+ ..+... |..++|+|+|++|+++. .|+.|.|||.
T Consensus 462 ~--~~~~~v~~~~~~~~~~~~----~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 462 K--YQVLPIAEWADLGEGAKR----VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp C--CEEECHHHHHCCCSSCCE----EEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred C--eEEeechhhcccCCCCCc----eEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 1 1222 333333 99999999999987652 4799999984
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=8.7e-23 Score=209.77 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=195.0
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-CCchhcccccceeeeccccccc
Q 005235 393 KGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-GNEEEQRRVKDLLHVETPTAPD 471 (707)
Q Consensus 393 sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-~~~~~~~~~~~v~~~~~~~~~~ 471 (707)
+++.|++|++||+.+++......+...|.+++|+|++ .+++.+.++.|.+|++.+ +....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~~~~~i~~~d~~~~~~~~~----------------- 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDG--KYLLLNSEGLLYRLSLAGDPSPEK----------------- 77 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTS--SEEEEEETTEEEEEESSSCCSCEE-----------------
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCC--CEEEEEcCCeEEEEeCCCCCCceE-----------------
Confidence 3468899999999999988777778999999999999 455566789999999876 42210
Q ss_pred CCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeeeccCCCeEEEEEeC
Q 005235 472 DNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP 549 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp 549 (707)
....+ ...+.+++|+|+|++|++++.+. ....|.++++.++.. ..+.....+.+++|+|
T Consensus 78 -----------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~sp 138 (297)
T 2ojh_A 78 -----------------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP--RLMTKNLPSYWHGWSP 138 (297)
T ss_dssp -----------------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC--EECCSSSSEEEEEECT
T ss_pred -----------------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce--EEeecCCCccceEECC
Confidence 11122 46788999999999999999432 133666666665553 4453344589999999
Q ss_pred CCCEEE-EEe-CCeEEEEEC--CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCC
Q 005235 550 TRSIFF-VST-KKNIRVYDL--LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPK 624 (707)
Q Consensus 550 d~~~l~-v~s-dg~I~iwDl--~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~ 624 (707)
+++.|+ ++. ++.++||++ .++. ...+..+...+.+++|+|+|.+|++++ .++.+.+|+++........+..|..
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 217 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY 217 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred CCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence 999887 454 898899985 3444 455666778899999999999888776 5899999998754466788888888
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235 625 DITNVAFHRSYPLFASCSDD-----------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~D-----------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L 693 (707)
.+.+++|+|++++|++++.+ +.|.+|+. .+... ..+..+.+|... +.+++|+|++++|
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~~-~~~~~~~~~~~~----~~~~~~spdg~~l 286 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM------DGGNV-ETLFDLFGGQGT----MNSPNWSPDGDEF 286 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET------TSCSC-EEEEEEEESTTT----SCSCCBCTTSSEE
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec------CCCCc-eeeeccCCCCcc----cccceECCCCCEE
Confidence 89999999999999888766 46999954 33332 234555577766 9999999999999
Q ss_pred EEEeCCC
Q 005235 694 FTAGADS 700 (707)
Q Consensus 694 ~s~g~Dg 700 (707)
++++.+.
T Consensus 287 ~~~~~~~ 293 (297)
T 2ojh_A 287 AYVRYFP 293 (297)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 8887654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=2.4e-22 Score=229.19 Aligned_cols=275 Identities=9% Similarity=0.093 Sum_probs=211.9
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC--CCCCchhcccccce
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT--GLGNEEEQRRVKDL 461 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~--~~~~~~~~~~~~~v 461 (707)
|...+.++++++.|++|.+||..+++++.++.....+.+++|+|+| ..+++++.++.|.+||+ .++..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~--------- 214 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTK--------- 214 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEE---------
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCCCCcE---------
Confidence 4445678899999999999999999999999865559999999999 47888889999999998 43311
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC----CCCEEEEEeC-CCCccEEEEEECCCCceeeeee
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR----RGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp----~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
...+.+...+..++|+| +|++|++++. ++ +|.|||..+.+.. ..+
T Consensus 215 --------------------------~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~---~v~v~D~~t~~~~-~~i 264 (543)
T 1nir_A 215 --------------------------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP---QFAIMDGETLEPK-QIV 264 (543)
T ss_dssp --------------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS---EEEEEETTTCCEE-EEE
T ss_pred --------------------------EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCC---eEEEEeccccccc-eee
Confidence 01223456689999999 9999999885 55 9999999988776 555
Q ss_pred -c----------c-CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEE-
Q 005235 537 -K----------L-HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGS- 599 (707)
Q Consensus 537 -~----------~-~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs- 599 (707)
. | ...+.++.|+|+++.++++. ++.|.+||+.+.+.+. .+. +...+.+++|+|+|++|++++
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEG
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEec
Confidence 2 1 23788999999988877765 7999999998764333 444 456788999999999877655
Q ss_pred CCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235 600 REGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRS-YPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 600 ~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspd-g~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
.+++|.+||+.++ ++..++.. |.+....+ ++|+ ++++++++ .|++|.||+...... ......+++++.+|
T Consensus 344 ~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 344 NSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQ 419 (543)
T ss_dssp GGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECS
T ss_pred CCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcC
Confidence 5889999999987 77777764 65444333 5777 77788876 689999996642100 01113468999998
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEe-------CCCcEEEEeC
Q 005235 674 TSSNGRGVMDCKFHPRQPWLFTAG-------ADSVIRLYCH 707 (707)
Q Consensus 674 ~~~~~~gV~~l~fspdg~~L~s~g-------~Dg~IrlWdl 707 (707)
... +..++|||++++|++++ .+++|.|||+
T Consensus 420 g~~----~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 420 GGG----SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp CSC----CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCC----ceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 765 89999999999999987 2789999985
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=7e-23 Score=216.26 Aligned_cols=212 Identities=8% Similarity=-0.030 Sum_probs=161.2
Q ss_pred CcEEEEEEccC----CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC-c-cceEEe
Q 005235 418 EAIQYVAWNPL----PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD-K-LDGIRL 491 (707)
Q Consensus 418 ~~V~~v~~spd----g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~-~-~~~~~~ 491 (707)
..|.+|+|+|+ + ..+++++ ..+.+|++.++.... . ...+.++.|++|++.. + ......
T Consensus 112 ~~v~sla~spd~~~~~-~~l~s~g--~~~~v~~l~~g~lv~---------s----s~~g~d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 112 REIRALFCSSDDESEK-QVLLKSG--NIKAVLGLTKRRLVS---------S----SGTLSDQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp EEEEEECC------CC-EEEEEEE--EEEEEEEETTTEEEE---------E----ESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred cceEEEEECCCccccc-cEEEeCC--CeEEEEecCCCcEEE---------e----cccCCCCcEEEEEECCCCceeeeec
Confidence 46899999999 7 2444444 458889876542211 0 0123589999999943 3 334477
Q ss_pred ccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc---CCCeEEEEEeCCCCEEE---------
Q 005235 492 RHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL---HGLPVSSVFHPTRSIFF--------- 555 (707)
Q Consensus 492 ~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~---~~~V~~v~fspd~~~l~--------- 555 (707)
.|...+..++|++ ++.+||+++.|+ +|+|||+.+++.. ..| .+ ...+.+++|+|++.+++
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~---TIkIWDl~TGk~l-~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMN---NIVIWNLKTGQLL-KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTS---EEEEEETTTCCEE-EEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCC---cEEEEECCCCcEE-EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 8999999999999 779999999998 9999999999988 777 43 34677889999998874
Q ss_pred ---EEe-CCeEEEEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235 556 ---VST-KKNIRVYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI 626 (707)
Q Consensus 556 ---v~s-dg~I~iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I 626 (707)
+|+ |++|++||..+++.+..+. +|...+.+.+++ +.++++|+.|++|+|||+.++ +++.+|.+|...+
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~v 328 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQH 328 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CC
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCe
Confidence 355 7999999999999887762 555555444444 889999999999999999987 7899999998765
Q ss_pred E-EEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 627 T-NVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 627 ~-~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
. +++|||+|++||||+.|++|+|||+
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 6899999999999999999999963
No 131
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.1e-22 Score=210.67 Aligned_cols=267 Identities=9% Similarity=-0.001 Sum_probs=199.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCC---cEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE---AIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~---~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.++++++.+++|++||+.+++.+..+.... .+.+++|+|++. .+++++ .++.|.+||+.++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~~----------- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKIDLVTGETL----------- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEEETTTCCEE-----------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC-EEEEEeCCCCeEEEEECCCCCeE-----------
Confidence 478999999999999999999999888755 689999999994 444444 4678999998765321
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe------------CCCCccEEEEEECCCCcee
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s------------~dg~~~~V~Iwdl~~~~~~ 532 (707)
..+..... ..|...+.+++|+|+|++|++++ .++ .|.+||+.++...
T Consensus 70 -------------~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~~ 128 (337)
T 1pby_B 70 -------------GRIDLSTP-----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT---RVALYDAETLSRR 128 (337)
T ss_dssp -------------EEEECCBT-----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC---EEEEEETTTTEEE
T ss_pred -------------eeEEcCCc-----ccccccccceEECCCCCEEEEEecccccccccccccCc---eEEEEECCCCcEE
Confidence 11100000 00123577899999999998886 344 9999999888765
Q ss_pred eeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC----------
Q 005235 533 RIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---------- 602 (707)
Q Consensus 533 ~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---------- 602 (707)
..+.....+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+. ....+.|+|+|..|++++..+
T Consensus 129 -~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 205 (337)
T 1pby_B 129 -KAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp -EEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred -EEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeecc
Confidence 556445678899999999988888 7899999999999888777553 112347899998776554332
Q ss_pred --------------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE
Q 005235 603 --------------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE 668 (707)
Q Consensus 603 --------------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~ 668 (707)
.|.+||+.++......+..+...+.+++|+|++++|+++ ++.|.+||. .+... +.
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~------~~~~~---~~ 274 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL------EKNAS---IK 274 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET------TTTEE---EE
T ss_pred ccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC------CCCcC---cc
Confidence 468999987743334455667788999999999998888 799999954 33332 44
Q ss_pred EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 669 ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 669 ~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+..+.. +.+++|+|++++|++++.++.|.+||+
T Consensus 275 ~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 275 RVPLPHS-----YYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSC-----CCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eecCCCc-----eeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4443322 889999999999999999999999985
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.4e-21 Score=206.37 Aligned_cols=275 Identities=9% Similarity=0.082 Sum_probs=193.9
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeee
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
...++++++.+++|++||+.+++.+..+.. ...+ +++|+|++. .+++++. ++.|.+||+.++...
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~~~~----------- 75 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCS-NVVVTSDFCQTLVQIETQLEPPK----------- 75 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSC-EEEEEESTTCEEEEEECSSSSCE-----------
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCC-EEEEEeCCCCeEEEEECCCCcee-----------
Confidence 344677888999999999999999888877 4556 999999994 4666665 778999987665210
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVS 544 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~ 544 (707)
......+.....+++|+|+|++|+++..++....|.+||+.++... ..+.....+.+
T Consensus 76 ----------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~ 132 (331)
T 3u4y_A 76 ----------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI-STIPIPYDAVG 132 (331)
T ss_dssp ----------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE-EEEECCTTEEE
T ss_pred ----------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE-EEEECCCCccc
Confidence 0112234444555999999999994444322338999999988776 66655667799
Q ss_pred EEEeCCCCEEEEEe--CCe-EEEEECCCCeEE----EEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcc-
Q 005235 545 SVFHPTRSIFFVST--KKN-IRVYDLLKQRLI----KKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKP- 615 (707)
Q Consensus 545 v~fspd~~~l~v~s--dg~-I~iwDl~~~~~~----~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~- 615 (707)
++|+|++++|+++. ++. |.+|++.....+ .........+.+++|+|+|++|++++ .++.|.+||+.++ +.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~ 211 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENI 211 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSC
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-ccc
Confidence 99999998776664 477 999998764322 12223345689999999999765554 6889999999876 55
Q ss_pred --eEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCC----CCCCCCCeeEEEEcC
Q 005235 616 --YRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH----TSSNGRGVMDCKFHP 688 (707)
Q Consensus 616 --~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh----~~~~~~gV~~l~fsp 688 (707)
+..+..+ ..+.+++|+|+|++|+.+ ..++.|.+|+.. ++.. ..+..+..+ ... ..++..++|+|
T Consensus 212 ~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~sp 282 (331)
T 3u4y_A 212 TLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL------SGTL-SFVKSFGHGLLIDPRP-LFGANQMALNK 282 (331)
T ss_dssp EEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT------TTEE-EEEEEEECCCCCCCGG-GTTCCCEEECT
T ss_pred ceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC------CCce-eeecccccccccCCCC-cccccceEECC
Confidence 6666644 567899999999966554 467889999543 3322 112232222 111 11245689999
Q ss_pred CCCEEEEEeC-CCcEEEEeC
Q 005235 689 RQPWLFTAGA-DSVIRLYCH 707 (707)
Q Consensus 689 dg~~L~s~g~-Dg~IrlWdl 707 (707)
++++|++++. ++.|.+|++
T Consensus 283 dg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTI 302 (331)
T ss_dssp TSSEEEEEETTTTEEEEEET
T ss_pred CCCEEEEecCCCCcEEEEEe
Confidence 9999866654 669999986
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.2e-21 Score=206.63 Aligned_cols=269 Identities=11% Similarity=0.113 Sum_probs=189.4
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEEecCCcEEEEEEccCCCccEEEEEeC-CeEEEEECC--CCCchhcccccceee
Q 005235 390 LEYKGSTDGTVRIWEVE-SG--RCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-QDVLILNTG--LGNEEEQRRVKDLLH 463 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~-tg--~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-~~V~lwd~~--~~~~~~~~~~~~v~~ 463 (707)
++++++.|+.|++|++. ++ +.+..+.....+.+++|+|++. .+++++.+ +.|.+|++. ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCce-----------
Confidence 45555889999999985 44 4555666678899999999994 56777665 899999976 2211
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCc---eeeeeeccC
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKL---SHRIPFKLH 539 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~---~~~~~~~~~ 539 (707)
.. . ........+.+++|+|+|++|++++. ++ .|.+|++..+. .. ..+...
T Consensus 75 --------------~~-------~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~i~~~d~~~~~~~~~~-~~~~~~ 128 (343)
T 1ri6_A 75 --------------TF-------A-AESALPGSLTHISTDHQGQFVFVGSYNAG---NVSVTRLEDGLPVGVV-DVVEGL 128 (343)
T ss_dssp --------------EE-------E-EEEECSSCCSEEEECTTSSEEEEEETTTT---EEEEEEEETTEEEEEE-EEECCC
T ss_pred --------------ee-------c-cccccCCCCcEEEEcCCCCEEEEEecCCC---eEEEEECCCCcccccc-ccccCC
Confidence 00 0 11122337899999999998887775 45 89999995322 22 333455
Q ss_pred CCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeEEE----EEeC-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 005235 540 GLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRLIK----KLET-GLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMD 610 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~~~----~l~~-~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~ 610 (707)
..+.+++|+|++.+|++++ ++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|.+||++
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 6789999999999888875 79999999987 65432 2332 334688999999999776655 78999999996
Q ss_pred CCC-cc--eEEee----cC--CCCEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 611 LSS-KP--YRVLK----CH--PKDITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 611 ~~~-~~--~~~l~----~h--~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
... .. ...+. ++ ...+.+++|+|++++|+ +++.++.|.+|++.. ... ....+..+..+..
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~----~~~-~~~~~~~~~~~~~----- 278 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE----DGS-VLSKEGFQPTETQ----- 278 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT----TSC-CEEEEEEEECSSS-----
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC----CCC-ceEEeeeecCCCc-----
Confidence 421 21 22222 11 23577899999998666 555899999996531 011 1223445554432
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 681 VMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
+.+++|+|++++|++++ .++.|.+|+
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 78899999999998887 689999995
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.9e-21 Score=214.14 Aligned_cols=237 Identities=10% Similarity=0.067 Sum_probs=183.9
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC---eEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ---DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~---~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
++|++||+..+.......+...|.+++|+|+|. .|++++.++ .|++||+.++.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~----------------------- 214 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA----------------------- 214 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCC-----------------------
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCc-----------------------
Confidence 799999997554433334488999999999994 677777664 78888876542
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEE-EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS-TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS 552 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la-t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~ 552 (707)
...+..|...+.+++|+|+|++|+ +++.++ ...|.+||+.++.. ..+ .+.+.+.+++|+|+++
T Consensus 215 ------------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g-~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 215 ------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTG-SLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp ------------EEEEECCSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSS
T ss_pred ------------EEEeecCCCcccCEEEcCCCCEEEEEEecCC-CceEEEEECCCCCE--EeCcCCCCcccceEECCCCC
Confidence 123446778899999999999988 455444 45799999998776 345 7788999999999999
Q ss_pred EEEEEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCC
Q 005235 553 IFFVST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 553 ~l~v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
+|++++ ++ .|.+||+.+++. ..+..+...+.+++|+|+|++|++++.+ ..|.+||+.++ .. ..+..|. .
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~-~ 355 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-GV-QVLSSTF-L 355 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-CE-EECCCSS-S
T ss_pred EEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-CE-EEecCCC-C
Confidence 888877 33 788889988764 3455566789999999999999988865 57999999876 33 4566664 8
Q ss_pred EEEEEEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 626 ITNVAFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
+.+++|+|+|++|++++.++ .|++|++ ... .+..+.+|... |.+++|+|...
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~------~g~----~~~~l~~~~~~----v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVST------DGR----FKARLPATDGQ----VKFPAWSPYLH 410 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEET------TSC----CEEECCCSSSE----EEEEEECCCCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEEC------CCC----cEEEeeCCCCC----CcCCccccccc
Confidence 99999999999999888776 7899954 222 26788888877 99999999643
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=3.8e-21 Score=226.53 Aligned_cols=302 Identities=9% Similarity=0.002 Sum_probs=218.2
Q ss_pred CCCcEEEEEeC-CC-----cEEEEeCCCCeEEEEEecC-------------------------CcEEEEEEccCCCccEE
Q 005235 386 VACYLEYKGST-DG-----TVRIWEVESGRCLRVLEIG-------------------------EAIQYVAWNPLPELPVL 434 (707)
Q Consensus 386 ~~~~~l~sgs~-Dg-----tVrIWd~~tg~~l~~l~~~-------------------------~~V~~v~~spdg~~~ll 434 (707)
.++..+++++. |+ +|++||+.+|+....+... ..|.+++||||| ..+
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg--~~l 123 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA--QRL 123 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS--SEE
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC--CEE
Confidence 34457888887 88 9999999999987777651 237899999999 355
Q ss_pred EEEeCCeEEEEECCCC---Cc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEe-ccCCC--------
Q 005235 435 AVSVGQDVLILNTGLG---NE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRL-RHFKM-------- 496 (707)
Q Consensus 435 a~s~d~~V~lwd~~~~---~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~-------- 496 (707)
+.+.++.|.+|++.++ .. .+..+...+..+.|+ ++.++ ++.|.+|+..++....+. .+...
T Consensus 124 ~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~ 202 (741)
T 2ecf_A 124 LFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEF 202 (741)
T ss_dssp EEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCH
T ss_pred EEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccce
Confidence 5555699999999887 33 334444556666665 33333 568999999876554332 22221
Q ss_pred --------eEEEEEcCCCCEEEEEeCCCC------------------------------ccEEEEEECCC-Cceeeeee-
Q 005235 497 --------VSSVEWHRRGDYLSTVMPAGE------------------------------SRAIFMHQLSK-KLSHRIPF- 536 (707)
Q Consensus 497 --------V~~v~~sp~g~~lat~s~dg~------------------------------~~~V~Iwdl~~-~~~~~~~~- 536 (707)
+.+++|||+|++|++++.++. ...|.+||+.+ +... ...
T Consensus 203 v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~ 281 (741)
T 2ecf_A 203 VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ-WIDL 281 (741)
T ss_dssp HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE-EECC
T ss_pred eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE-EecC
Confidence 478999999999999876541 12788899988 7654 322
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe------CCeEEEEECCCCeEEEEEeCCCC----CeEEEEEcCCCCEEEEEECCCcE
Q 005235 537 --KLHGLPVSSVFHPTRSIFFVST------KKNIRVYDLLKQRLIKKLETGLK----EVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 537 --~~~~~V~~v~fspd~~~l~v~s------dg~I~iwDl~~~~~~~~l~~~~~----~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.+...+.+++| |+|++|+++. +..|++||+.++++...+..+.. .+.+++|+|+|+++++++.+|.+
T Consensus 282 ~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 282 GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQ 360 (741)
T ss_dssp CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSC
T ss_pred CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCcc
Confidence 35678899999 9999988754 36799999999987776665432 34689999999999999999988
Q ss_pred EEEECCCCCcceEEeecCCCCEEEE-EEcCCCCEEE-EEeCCC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNV-AFHRSYPLFA-SCSDDC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~v-afspdg~lla-Sgs~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
.||.++.... ...+..|...|.++ +|+|+++.|+ +++.++ .++||++... +. .+..+.+ .. +
T Consensus 361 ~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-----g~---~~~~l~~-~~----~ 426 (741)
T 2ecf_A 361 HLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-----GG---QPQRLSK-AP----G 426 (741)
T ss_dssp EEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT-----CC---CCEECCC-SC----S
T ss_pred EEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC-----CC---Ceeeccc-CC----C
Confidence 8887764435 77888888889887 5999998665 555565 8999976321 11 1345554 22 3
Q ss_pred eeEEEEcCCCCEEEEEeCC----CcEEEEe
Q 005235 681 VMDCKFHPRQPWLFTAGAD----SVIRLYC 706 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g~D----g~IrlWd 706 (707)
+.+++|+|+|++|+....+ +.+.+|+
T Consensus 427 ~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 427 MHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 8999999999988766443 3566665
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=9.6e-21 Score=221.97 Aligned_cols=300 Identities=10% Similarity=0.042 Sum_probs=204.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeE--EEEEecC-----------------CcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRC--LRVLEIG-----------------EAIQYVAWNPLPELPVLAVSVGQDVLILNTG 448 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~--l~~l~~~-----------------~~V~~v~~spdg~~~lla~s~d~~V~lwd~~ 448 (707)
+..+++++.|+ | +||+.+|+. ...+... ..|.+++|+|++ .++ .+.++.|.+||+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~--~~~-~~~~~~i~~~d~~ 109 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG--LVV-LFTQGGLVGFDML 109 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT--EEE-EEETTEEEEEETT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC--eEE-EEECCEEEEEECC
Confidence 34566667788 8 999999987 3333332 569999999995 344 4467999999998
Q ss_pred CCCch-hcccccceeeeccc-----ccccCCCCcEEEEecCC-----ccceEEe-ccCCC--------------eEEEEE
Q 005235 449 LGNEE-EQRRVKDLLHVETP-----TAPDDNMASIVSWLQHD-----KLDGIRL-RHFKM--------------VSSVEW 502 (707)
Q Consensus 449 ~~~~~-~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~-----~~~~~~~-~h~~~--------------V~~v~~ 502 (707)
++... +......+..+.|+ ++. ..++.|.+|++.+ +....+. .+... +.+++|
T Consensus 110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~ 188 (706)
T 2z3z_A 110 ARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW 188 (706)
T ss_dssp TTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred CCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence 77542 22233344445554 333 3678999999987 5543322 22222 589999
Q ss_pred cCCCCEEEEEeCC------------------------------CCccEEEEEECCCCceeeeee---ccCCCeEEEEEeC
Q 005235 503 HRRGDYLSTVMPA------------------------------GESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHP 549 (707)
Q Consensus 503 sp~g~~lat~s~d------------------------------g~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fsp 549 (707)
+|+|++|++++.| .....|.+||+.++... ... .+...+.+++|+|
T Consensus 189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEEEEEEECT
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeEeeEEEEC
Confidence 9999999998732 12358999999988764 332 3556789999999
Q ss_pred CCCEEEEEe-CC-----eEEEEECCCCeEEEEEe--CCCCC---eEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcce
Q 005235 550 TRSIFFVST-KK-----NIRVYDLLKQRLIKKLE--TGLKE---VSSIAIHP--AGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 550 d~~~l~v~s-dg-----~I~iwDl~~~~~~~~l~--~~~~~---I~sl~~sp--dg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
+++.|++++ ++ .|++||+.+++....+. .+..+ +.+++|+| +|++|++++.++.+.||+++......
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 999888866 54 89999999983333332 22222 46789999 99999999999999999887444667
Q ss_pred EEeecCCCCEEE-EEEcCCCCEEEEEe-CCC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 617 RVLKCHPKDITN-VAFHRSYPLFASCS-DDC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 617 ~~l~~h~~~I~~-vafspdg~llaSgs-~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
..+..|...+.+ ++|+|+++.|+.++ .++ .+.||.+ ++.+.. +..+. |... +.+++|+|+|++
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~----d~~~~~----~~~l~-~~~~----~~~~~~spdg~~ 414 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI----DIKGGK----TKDLT-PESG----MHRTQLSPDGSA 414 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE----ETTCCC----CEESC-CSSS----EEEEEECTTSSE
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE----EcCCCC----ceecc-CCCc----eEEEEECCCCCE
Confidence 788888888887 79999999776554 444 3455533 232222 23333 4333 999999999998
Q ss_pred EEEEeCC----CcEEEEeC
Q 005235 693 LFTAGAD----SVIRLYCH 707 (707)
Q Consensus 693 L~s~g~D----g~IrlWdl 707 (707)
|+.++.+ +.|.+|++
T Consensus 415 l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEEECSSCSCEEEEEES
T ss_pred EEEEecCCCCCcEEEEEEC
Confidence 8776443 56999984
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=2.3e-21 Score=237.97 Aligned_cols=294 Identities=13% Similarity=0.083 Sum_probs=215.6
Q ss_pred cCCCCcEEEEEeC------------CCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-
Q 005235 384 YPVACYLEYKGST------------DGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL- 449 (707)
Q Consensus 384 fp~~~~~l~sgs~------------DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~- 449 (707)
|+. + ++++++. +...+||.... ++......+...+.+++|+++. .++++..++.+.||.+..
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~--l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETT
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCE--EEEEEeccCceEEEEEeCC
Confidence 444 5 8888753 34566775433 4443333338899999999884 455566678888887653
Q ss_pred -CCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEec-----------cCCCeEEEEEc-CCCCEEE
Q 005235 450 -GNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLR-----------HFKMVSSVEWH-RRGDYLS 510 (707)
Q Consensus 450 -~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~-----------h~~~V~~v~~s-p~g~~la 510 (707)
+.. .+..+. .+....|+ ++.+ .++.+.+|+........+.. |...+.+++|+ |+|++|+
T Consensus 235 g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la 312 (1045)
T 1k32_A 235 GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA 312 (1045)
T ss_dssp SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence 221 222221 22222332 3333 57889999885443332222 34479999999 9999999
Q ss_pred EEeCCCCccEEEEEECCCCceeeeee-ccCC-CeEEEEEeCCCCEEEEEe-CCeEE-EEECCCCeEEEEEeCCCCCeEEE
Q 005235 511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHG-LPVSSVFHPTRSIFFVST-KKNIR-VYDLLKQRLIKKLETGLKEVSSI 586 (707)
Q Consensus 511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~-~V~~v~fspd~~~l~v~s-dg~I~-iwDl~~~~~~~~l~~~~~~I~sl 586 (707)
+++ ++ .|.+|++..+... .+ .+.+ .+.+++|+ ++..|++++ ++.|. +||+.+++.. .+..+...+.++
T Consensus 313 ~~~-~~---~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~ 384 (1045)
T 1k32_A 313 FVS-RG---QAFIQDVSGTYVL--KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAM 384 (1045)
T ss_dssp EEE-TT---EEEEECTTSSBEE--ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEE
T ss_pred EEE-cC---EEEEEcCCCCceE--EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeee
Confidence 988 55 8999999877654 35 6666 89999999 999999888 67788 8999877654 444777889999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeccccc
Q 005235 587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----------TAYVFHGMVYS 656 (707)
Q Consensus 587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----------~I~Vwd~~~~~ 656 (707)
+|+|+|++|++++.++.|++||+.++ .....+..|...+.+++|||+|++||+++.++ .|++|++
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~---- 459 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM---- 459 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET----
T ss_pred EECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC----
Confidence 99999999999999999999999877 66666778999999999999999998887654 8999954
Q ss_pred CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.++. +..+.+|... +.+++|+|+|++|++++.++..++|+
T Consensus 460 --~~g~----~~~l~~~~~~----~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 460 --EGRK----IFAATTENSH----DYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp --TTTE----EEECSCSSSB----EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred --CCCc----EEEeeCCCcc----cCCceEcCCCCEEEEEecccCCcCcc
Confidence 3332 4567777665 89999999999999999988887775
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=5e-20 Score=195.57 Aligned_cols=268 Identities=6% Similarity=0.010 Sum_probs=194.2
Q ss_pred CCcEEEEEeC-------CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccc
Q 005235 387 ACYLEYKGST-------DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 387 ~~~~l~sgs~-------DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~ 458 (707)
++..+|+++. ++.|.+||..+++.+..+.....+.+++|+|++. .+++++ .++.|.+||+.++...
T Consensus 51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~~----- 124 (353)
T 3vgz_A 51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ-TLWFGNTVNSAVTAIDAKTGEVK----- 124 (353)
T ss_dssp TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT-EEEEEETTTTEEEEEETTTCCEE-----
T ss_pred CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC-EEEEEecCCCEEEEEeCCCCeeE-----
Confidence 3345666553 6789999999999999998877789999999994 355544 4689999998765321
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK- 537 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~- 537 (707)
..+....... ........+.+++|+|+|+++++++... .+.|.+||+.++... ..+.
T Consensus 125 -------------------~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~i~~~d~~~~~~~-~~~~~ 182 (353)
T 3vgz_A 125 -------------------GRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGK-ESVIWVVDGGNIKLK-TAIQN 182 (353)
T ss_dssp -------------------EEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESS-SCEEEEEETTTTEEE-EEECC
T ss_pred -------------------EEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCC-CceEEEEcCCCCceE-EEecC
Confidence 1111100000 0000111368899999999888776311 238999999988776 6664
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET----GLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDL 611 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~ 611 (707)
+...+.+++|+|++.+|++++ ++.|.+||+.+++.+..+.. +...+.+++|+|+|++|++++.+ +.|.+||+.+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 566688999999999999988 89999999999998888775 34458899999999988777654 8999999987
Q ss_pred CCcceEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 612 SSKPYRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 612 ~~~~~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
+ +.+..+..+.. .+++|+|+++.+ +++..++.|.+||. .+... +..+..+.. +.+++|+|+|
T Consensus 263 ~-~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~------~~~~~---~~~~~~~~~-----~~~~~~s~dg 325 (353)
T 3vgz_A 263 G-NILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDA------KSYKV---VKTFDTPTH-----PNSLALSADG 325 (353)
T ss_dssp C-CEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEET------TTTEE---EEEEECCSE-----EEEEEECTTS
T ss_pred C-cEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEEC------CCCeE---EEEEecCCC-----CCeEEEcCCC
Confidence 7 56666664432 579999999955 45557999999954 33333 444544432 8999999999
Q ss_pred CEEEEEeCC
Q 005235 691 PWLFTAGAD 699 (707)
Q Consensus 691 ~~L~s~g~D 699 (707)
++|+.++.+
T Consensus 326 ~~l~v~~~~ 334 (353)
T 3vgz_A 326 KTLYVSVKQ 334 (353)
T ss_dssp CEEEEEEEC
T ss_pred CEEEEEEcc
Confidence 987766654
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=3.2e-20 Score=227.68 Aligned_cols=253 Identities=11% Similarity=-0.019 Sum_probs=196.0
Q ss_pred cEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcc----------
Q 005235 389 YLEYKGSTDGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQR---------- 456 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~---------- 456 (707)
.++++++.||+++||.+.. +.....+.....+.+++|+|+|. .++.+.++.|.+|++...... +..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~--~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~ 292 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR--RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI 292 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS--CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC--EEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence 4788888999999998753 44444555544577889999993 444557999999998433211 111
Q ss_pred -cccceeeeccc------ccccCCCCcEEEEecCCccceEEeccCC-CeEEEEEcCCCCEEEEEeCCCCccEEE-EEECC
Q 005235 457 -RVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGIRLRHFK-MVSSVEWHRRGDYLSTVMPAGESRAIF-MHQLS 527 (707)
Q Consensus 457 -~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~~~~h~~-~V~~v~~sp~g~~lat~s~dg~~~~V~-Iwdl~ 527 (707)
+...+..+.|+ ++.++ ++.+.+|+..+.....+..|.. .+.+++|+ +|+.|++++.+. .+. +|++.
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~---~l~~~~d~~ 367 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG---DFLGIYDYR 367 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE---EEEEEEETT
T ss_pred ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC---ceEEEEECC
Confidence 11123333332 33333 7789999988766555666777 89999999 999999999755 888 99998
Q ss_pred CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---
Q 005235 528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG--- 602 (707)
Q Consensus 528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg--- 602 (707)
++... .+ .+...+.+++|+|+|++|++++ ++.|++||+.+++....+..|...+.+++|+|+|++|++++.++
T Consensus 368 ~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 368 TGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp TCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 77653 34 7778899999999999999888 79999999999988877778888899999999999999887754
Q ss_pred -------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 603 -------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 603 -------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
.|++||+.++ + ...+..|...+.+++|+|+|+.|++++.++...+|+.
T Consensus 446 ~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 8999999876 4 6778888889999999999999999999888888864
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=5.1e-21 Score=224.60 Aligned_cols=271 Identities=11% Similarity=0.051 Sum_probs=187.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC----cEEEEEEccCCCccEEEEEeC---------CeEEEEECCCC
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE----AIQYVAWNPLPELPVLAVSVG---------QDVLILNTGLG 450 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~----~V~~v~~spdg~~~lla~s~d---------~~V~lwd~~~~ 450 (707)
|..++.++++ +.||+|++||+.+|++...+.... .|.+++|||||. .|++++.+ +.|.+||+.++
T Consensus 24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 101 (723)
T 1xfd_A 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (723)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCC
Confidence 3344456666 789999999999999887777633 499999999993 56666553 45555555443
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEE---eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR---LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~---~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
....+ ..|...+.+++|||+|++||+++. + .|.+|++.
T Consensus 102 -----------------------------------~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~---~i~~~~~~ 142 (723)
T 1xfd_A 102 -----------------------------------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-N---NIYYCAHV 142 (723)
T ss_dssp -----------------------------------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-T---EEEEESSS
T ss_pred -----------------------------------ceEeccCCccccccccccEECCCCCEEEEEEC-C---eEEEEECC
Confidence 22111 134455889999999999999986 4 89999999
Q ss_pred CCceeeeee-ccCCC------------------eEEEEEeCCCCEEEEEe-CC---------------------------
Q 005235 528 KKLSHRIPF-KLHGL------------------PVSSVFHPTRSIFFVST-KK--------------------------- 560 (707)
Q Consensus 528 ~~~~~~~~~-~~~~~------------------V~~v~fspd~~~l~v~s-dg--------------------------- 560 (707)
++... ... .+... +.+++|+|+|+.|++++ ++
T Consensus 143 ~g~~~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 143 GKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp SSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCceE-EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 87765 333 33332 37899999999998876 32
Q ss_pred -------eEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeec-C
Q 005235 561 -------NIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKC-H 622 (707)
Q Consensus 561 -------~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~-h 622 (707)
.|++||+.+++....+..+ ...+.+++|+|||++|++.+.. ..|.+||+.++ ++...+.. +
T Consensus 222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~ 300 (723)
T 1xfd_A 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDES 300 (723)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEEC
T ss_pred CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEecc
Confidence 7999999988765666654 4678999999999988777543 57999999877 45555443 3
Q ss_pred CCCEE----EEEEcCCCCEEEE--EeCCC----c--EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEEcCC
Q 005235 623 PKDIT----NVAFHRSYPLFAS--CSDDC----T--AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKFHPR 689 (707)
Q Consensus 623 ~~~I~----~vafspdg~llaS--gs~Dg----~--I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~fspd 689 (707)
...+. +++|||+|+.|+. +..++ . |.+|+. ...... .+...+..+... +.. ++|+|+
T Consensus 301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~-----~~~~~~-~~~~~l~~~~~~----~~~~~~~spd 370 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS-----QPNSSN-DNIQSITSGDWD----VTKILAYDEK 370 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS-----SCCSSS-CCCCBSCCSSSC----EEEEEEEETT
T ss_pred CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec-----cCCCCc-cceeEeecCCeE----EEeeeEEcCC
Confidence 34443 7899999996664 45677 4 555531 112210 012233332222 554 699999
Q ss_pred CCEEEEEeCC---CcEEEEeC
Q 005235 690 QPWLFTAGAD---SVIRLYCH 707 (707)
Q Consensus 690 g~~L~s~g~D---g~IrlWdl 707 (707)
|++|+.++.+ +.++||++
T Consensus 371 g~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 371 GNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp TTEEEEEESSSCTTCCEEEEE
T ss_pred CCEEEEEEcCCCCcceEEEEE
Confidence 9999776655 78999973
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=5e-19 Score=188.56 Aligned_cols=270 Identities=10% Similarity=0.092 Sum_probs=182.6
Q ss_pred EEEEEe----CCCcEEEEeC--CCCeEEE--EEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccc
Q 005235 390 LEYKGS----TDGTVRIWEV--ESGRCLR--VLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 390 ~l~sgs----~DgtVrIWd~--~tg~~l~--~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~ 458 (707)
.+|.|+ .++.|.+|.+ .+|+... .......+..++|+|+| . +++++. ++.|.+|++.++..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~------ 75 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTA------ 75 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEE------
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcE------
Confidence 455553 3456777665 4676543 33336778899999999 3 776665 47889998744311
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCcee-e-ee
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSH-R-IP 535 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~-~-~~ 535 (707)
.. ......+...+..++|+|+|++|++++ .++ .|.+|++...... . ..
T Consensus 76 -------------------~~-------~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~---~v~v~~~~~~g~~~~~~~ 126 (347)
T 3hfq_A 76 -------------------HK-------LNTVVAPGTPPAYVAVDEARQLVYSANYHKG---TAEVMKIAADGALTLTDT 126 (347)
T ss_dssp -------------------EE-------EEEEEEESCCCSEEEEETTTTEEEEEETTTT---EEEEEEECTTSCEEEEEE
T ss_pred -------------------EE-------eeeeecCCCCCEEEEECCCCCEEEEEeCCCC---EEEEEEeCCCCCeeecce
Confidence 00 011234677889999999999999888 445 9999999633222 0 22
Q ss_pred ecc----------CCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-CCeEE--EEEeCC-CCCeEEEEEcCCCCEEEE-EE
Q 005235 536 FKL----------HGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-KQRLI--KKLETG-LKEVSSIAIHPAGDNLIV-GS 599 (707)
Q Consensus 536 ~~~----------~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~~~~~--~~l~~~-~~~I~sl~~spdg~~L~s-Gs 599 (707)
+.. ...+.+++|+|+++++++.. ++.|++|++. ++++. ..+... ...+..++|+|+|++|++ +.
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 206 (347)
T 3hfq_A 127 VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE 206 (347)
T ss_dssp EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred eecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence 221 12488999999999444444 7899999998 55433 223332 236788999999997666 45
Q ss_pred CCCcEEEEECCCCC-c--ceEEeecCC------CCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235 600 REGKLCWFDMDLSS-K--PYRVLKCHP------KDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669 (707)
Q Consensus 600 ~Dg~I~vwDl~~~~-~--~~~~l~~h~------~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~ 669 (707)
.++.|.+|+++... . ....+.... ..+..++|+|+|++| +++..++.|.+|++.. ......+..
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~------~g~~~~~~~ 280 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA------DGHLTLIQQ 280 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG------GGCEEEEEE
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC------CCcEEEeEE
Confidence 67899999988521 2 122333332 348899999999966 5666789999996531 112234566
Q ss_pred eeCCCCCCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEe
Q 005235 670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-SVIRLYC 706 (707)
Q Consensus 670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-g~IrlWd 706 (707)
+..+... +.+++|+|+|++|++++.+ +.|.+|+
T Consensus 281 ~~~~~~~----~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 281 ISTEGDF----PRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp EECSSSC----CCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCC----cCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 6666554 8999999999999888765 8999994
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=4.4e-20 Score=217.44 Aligned_cols=269 Identities=9% Similarity=0.019 Sum_probs=199.3
Q ss_pred CCcEEEEEEccCCCccEEEEEe-CC-----eEEEEECCCCCch--hcccc------------------------cceeee
Q 005235 417 GEAIQYVAWNPLPELPVLAVSV-GQ-----DVLILNTGLGNEE--EQRRV------------------------KDLLHV 464 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~-d~-----~V~lwd~~~~~~~--~~~~~------------------------~~v~~~ 464 (707)
...|.+++|+|||. .|++++. ++ .|.+|++.++... ...+. ..+..+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45689999999994 6777776 77 8999999887542 11111 124455
Q ss_pred ccc-----ccccCCCCcEEEEecCCc---cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235 465 ETP-----TAPDDNMASIVSWLQHDK---LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 465 ~~~-----~~~~~~d~~i~iW~~~~~---~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
.|+ ++.++. +.+.+|++.++ ....+..|...+.+++|||+|++|++++. + .|.+|++.++... ...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~---~i~~~d~~~g~~~-~~~ 188 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-R---NLWVIDLASGRQM-QLT 188 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-T---EEEEEETTTTEEE-ECC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-C---cEEEEecCCCCEE-Eec
Confidence 554 343333 89999999887 66567778889999999999999999884 3 8999999987664 333
Q ss_pred -ccCCC----------------eEEEEEeCCCCEEEEEe-CC---------------------------------eEEEE
Q 005235 537 -KLHGL----------------PVSSVFHPTRSIFFVST-KK---------------------------------NIRVY 565 (707)
Q Consensus 537 -~~~~~----------------V~~v~fspd~~~l~v~s-dg---------------------------------~I~iw 565 (707)
.+... +.+++|+|||++|++++ ++ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 22221 47899999999988876 54 88999
Q ss_pred ECCC-CeEEEEEe--CCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEECCCCCcceEEeecCCC----CEEEEEEcC
Q 005235 566 DLLK-QRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSR-----EGKLCWFDMDLSSKPYRVLKCHPK----DITNVAFHR 633 (707)
Q Consensus 566 Dl~~-~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~-----Dg~I~vwDl~~~~~~~~~l~~h~~----~I~~vafsp 633 (707)
|+.+ ++...... .+...+.+++| |+|++|++++. +..|++||+.++ .+...+..+.. .+.+++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECC
Confidence 9988 77554332 35677999999 99999998764 567999999877 55566655543 456899999
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE-EEcCCCCEEEE-EeCCC--cEEEEeC
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC-KFHPRQPWLFT-AGADS--VIRLYCH 707 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l-~fspdg~~L~s-~g~Dg--~IrlWdl 707 (707)
+|+++++++.||.++||.+. +... +..+..|... |.++ .|+|++++|+. ++.++ .++||++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~----~~~~-----~~~l~~~~~~----v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRID----SKGK-----AAALTHGNWS----VDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp TSCEEEEECTTSSCEEEEEC----SSSC-----EEESCCSSSC----EEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CCeEEEEecCCCccEEEEEc----CCCC-----eeeeeecceE----EEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 99999999999999999652 2221 4566777655 8887 59999998754 55555 8999963
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2.2e-19 Score=210.72 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=175.5
Q ss_pred cEEEEEeC---------CCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 389 YLEYKGST---------DGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 389 ~~l~sgs~---------DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
.++++++. ++.|++||+.++++ ..+.. ...+.+++|||||. .++.+.++.|++|++.++....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~~~i~~~~~~~g~~~~- 148 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFENNIYYCAHVGKQAIR- 148 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEETTEEEEESSSSSCCEE-
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEECCeEEEEECCCCceEE-
Confidence 36666655 37889999999886 33433 23488999999993 4555556899999987653210
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccceEEecc---------CCCeEEEEEcCCCCEEEEEeCCCC---------
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH---------FKMVSSVEWHRRGDYLSTVMPAGE--------- 517 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h---------~~~V~~v~~sp~g~~lat~s~dg~--------- 517 (707)
+-.. ........++ .+.+.+++|||+|++|++++.++.
T Consensus 149 -----------------------~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~ 204 (723)
T 1xfd_A 149 -----------------------VVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (723)
T ss_dssp -----------------------EECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred -----------------------EecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec
Confidence 0000 0000001111 123478999999999999875431
Q ss_pred ----------------------ccEEEEEECCCCceeeeee-c------cCCCeEEEEEeCCCCEEEEEe-C----CeEE
Q 005235 518 ----------------------SRAIFMHQLSKKLSHRIPF-K------LHGLPVSSVFHPTRSIFFVST-K----KNIR 563 (707)
Q Consensus 518 ----------------------~~~V~Iwdl~~~~~~~~~~-~------~~~~V~~v~fspd~~~l~v~s-d----g~I~ 563 (707)
...|.+||+.++... ..+ . +...+.+++|+|+|++|+++. . ..|+
T Consensus 205 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred cCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 238999999888753 344 2 256789999999999887764 2 5799
Q ss_pred EEECCCCeEEEEEeC-CCCCeE----EEEEcCCCCEEEE--EECCC------cEEEEECCCCCc--ceEEeecCCCCEEE
Q 005235 564 VYDLLKQRLIKKLET-GLKEVS----SIAIHPAGDNLIV--GSREG------KLCWFDMDLSSK--PYRVLKCHPKDITN 628 (707)
Q Consensus 564 iwDl~~~~~~~~l~~-~~~~I~----sl~~spdg~~L~s--Gs~Dg------~I~vwDl~~~~~--~~~~l~~h~~~I~~ 628 (707)
+||+.++++...+.. +..++. +++|+|+|+.|+. +..++ .|.+||+..+.. +...+..+...+..
T Consensus 284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~ 363 (723)
T 1xfd_A 284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (723)
T ss_dssp EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence 999999887766543 334443 8899999997775 44566 577777323323 14455544445554
Q ss_pred -EEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeC---CCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 629 -VAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRG---HTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 629 -vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~g---h~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
++|+|+|+.|+..+.+ +.++||.+.. ..... ...+.+ |... +..++|+|+|++|+...
T Consensus 364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~----~~~~~---~~~l~~~~~~~~~----~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANT----VGNFN---RQCLSCDLVENCT----YFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECS----STTCC---CBCSSTTSSSSCC----CCEEEECTTSSEEEEEC
T ss_pred eeEEcCCCCEEEEEEcCCCCcceEEEEEeC----CCCCC---cceecccccCCCC----eEEEEECCCCCEEEEEc
Confidence 6999999988766554 7899997632 22111 122332 4443 88999999999887653
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.8e-19 Score=189.25 Aligned_cols=272 Identities=8% Similarity=-0.019 Sum_probs=184.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE--AIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~--~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
+.....++++++.+++|++||+.+++.+..+.... .+.+++|+|++. .+++++ .++.|.+|++.++...
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~i~~~d~~t~~~~------- 78 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNT------- 78 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEE-------
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC-EEEEEeCCCCcEEEEeCCCCcEE-------
Confidence 34456789999999999999999999999888755 789999999994 444444 5788999997665221
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEecc-----CCCeEEEEEcCCCCEEEEEeCC---------CCccEEEEEEC
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-----FKMVSSVEWHRRGDYLSTVMPA---------GESRAIFMHQL 526 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-----~~~V~~v~~sp~g~~lat~s~d---------g~~~~V~Iwdl 526 (707)
... ...+ ...+.+++|+|+|++|++++.+ ...+.|.+||+
T Consensus 79 -----------------~~~---------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 79 -----------------FHA---------NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp -----------------EEE---------ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred -----------------EEE---------EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 000 0111 2347889999999999998854 00139999999
Q ss_pred CCCceee--eeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCC-----------------------
Q 005235 527 SKKLSHR--IPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLK----------------------- 581 (707)
Q Consensus 527 ~~~~~~~--~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~----------------------- 581 (707)
.++.... ..+.+...+.+++|+|+++ ++++ ++.|.+||+.+++.+..+..+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 133 ADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp GGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred CCccccceeeeccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 8754321 2334455788999999999 6554 44599999999988887764420
Q ss_pred -CeEEEEEcCCCCEEEEEECCC-cEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCC
Q 005235 582 -EVSSIAIHPAGDNLIVGSREG-KLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDL 658 (707)
Q Consensus 582 -~I~sl~~spdg~~L~sGs~Dg-~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl 658 (707)
...++++++++.......... .+..+|+.++......+..+...+.+++|+| ++.+|+++ ++.|.+||.
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~------ 282 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL------ 282 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEET------
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEEC------
Confidence 245567776552221111111 1223555544322233334566789999999 99998888 889999954
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.+... +..+..+.. +.+++|+|++.+|++++.++.|.+||+
T Consensus 283 ~~~~~---~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 283 KQRKL---IKAANLDHT-----YYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp TTTEE---EEEEECSSC-----CCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ccCeE---EEEEcCCCC-----ccceEECCCCCEEEEecCCCeEEEEec
Confidence 34332 444443322 789999999999988889999999985
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=2.6e-19 Score=183.67 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=167.2
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-cc-CCCeEEEEEe
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KL-HGLPVSSVFH 548 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~-~~~V~~v~fs 548 (707)
+.++.+.+|+..+.....+..|...|.+++|+|+|++|++++ ++ .|.+|++.+ +... ..+ .+ ...+.+++|+
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~---~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EG---LLYRLSLAGDPSPE-KVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TT---EEEEEESSSCCSCE-ECCCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CC---eEEEEeCCCCCCce-EeccccccccccceEEC
Confidence 345667777776666656677899999999999999999987 55 999999998 7665 444 33 4778999999
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcceEEeecC
Q 005235 549 PTRSIFFVST-K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 549 pd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
|++++|++++ + ..|.+|++.++. ...+..+ ..+.+++|+|+|++|+ +++.++.+.||+++........+..|
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 9999999887 2 455555666554 3444444 4589999999999887 78889999999976544556777788
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC--
Q 005235 623 PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-- 699 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-- 699 (707)
...+.+++|+|++++|+.++ .++.++||++.. ... .+..+..|... +.+++|+|++.+|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~----~~~----~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV----DGS----SVERITDSAYG----DWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----TSS----CEEECCCCSEE----EEEEEECTTSSEEEEEEEETT
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECC----CCC----CcEEEecCCcc----cCCeEECCCCCEEEEEEcCCC
Confidence 88999999999999877666 589999996632 111 25566777655 9999999999999888876
Q ss_pred ---------CcEEEEeC
Q 005235 700 ---------SVIRLYCH 707 (707)
Q Consensus 700 ---------g~IrlWdl 707 (707)
+.|.+|++
T Consensus 240 ~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp CCSCCSSEEEEEEEEET
T ss_pred CCcccccCceEEEEEec
Confidence 56999985
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=3.1e-18 Score=180.42 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=175.5
Q ss_pred CCCcEEEEEeCC-CcEEEEeCC--CCe--EEEEEecCCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhccccc
Q 005235 386 VACYLEYKGSTD-GTVRIWEVE--SGR--CLRVLEIGEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 386 ~~~~~l~sgs~D-gtVrIWd~~--tg~--~l~~l~~~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~ 459 (707)
.++.++++++.+ +.|++|++. ++. .+..+.....+.+++|+|++. .+++++. ++.|.+|++..+..
T Consensus 47 pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~~~------- 118 (343)
T 1ri6_A 47 PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLP------- 118 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEE-------
T ss_pred CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCC-EEEEEecCCCeEEEEECCCCcc-------
Confidence 344567776665 999999998 665 444555556899999999994 4656654 77899998742100
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCC-Cceeee---
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSK-KLSHRI--- 534 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~-~~~~~~--- 534 (707)
............+.+++|+|+|++|++++ .++ .|.+|++.+ +.....
T Consensus 119 -------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 119 -------------------------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQD---RICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp -------------------------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT---EEEEEEECTTSCEEEEEEE
T ss_pred -------------------------ccccccccCCCCceEEEECCCCCEEEEecCCCC---EEEEEEecCCCceeeeccc
Confidence 00001223345688999999999888887 666 999999987 543211
Q ss_pred ee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeC---C---CCCeEEEEEcCCCCEEEEEE-
Q 005235 535 PF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLET---G---LKEVSSIAIHPAGDNLIVGS- 599 (707)
Q Consensus 535 ~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~---~---~~~I~sl~~spdg~~L~sGs- 599 (707)
.+ .....+.+++|+|++.+|++++ ++.|.+|++.. ++. ...+.. + ...+.+++|+|+|++|+++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 23 3445788999999999887665 79999999953 432 333331 1 23577899999999887554
Q ss_pred CCCcEEEEECCC--C-CcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 600 REGKLCWFDMDL--S-SKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 600 ~Dg~I~vwDl~~--~-~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
.++.|.+||+.. + .+.+..+..+.. +.+++|+|++++|++++ .++.|.||++. ..++. ...+..+.....
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d----~~~g~-~~~~~~~~~g~~ 324 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV----GEQGL-LHEKGRYAVGQG 324 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE----TTTTE-EEEEEEEECSSS
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc----CCCce-eeEccccccCCC
Confidence 789999999983 2 134445555544 88999999999888777 68999999652 22222 123444444322
Q ss_pred CCCCCeeEEEEcCCCC
Q 005235 676 SNGRGVMDCKFHPRQP 691 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~ 691 (707)
..+++|+|+..
T Consensus 325 -----p~~i~~~~~~~ 335 (343)
T 1ri6_A 325 -----PMWVVVNAHEG 335 (343)
T ss_dssp -----CCEEEEEEEC-
T ss_pred -----CeeEEEEcccC
Confidence 67788877543
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=3.1e-17 Score=175.81 Aligned_cols=270 Identities=9% Similarity=0.057 Sum_probs=179.2
Q ss_pred cEEEEEe----CCCcEEEEeC--CCCeEE--EEEecCCcEEEEEEccCCCccEEEEEeC----CeEEEEECCCCCchhcc
Q 005235 389 YLEYKGS----TDGTVRIWEV--ESGRCL--RVLEIGEAIQYVAWNPLPELPVLAVSVG----QDVLILNTGLGNEEEQR 456 (707)
Q Consensus 389 ~~l~sgs----~DgtVrIWd~--~tg~~l--~~l~~~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~~~~~~~~~~ 456 (707)
.+++.|+ .++.|.+|.+ .+|+.. ..+ ....+..++|+|+|. .|++++.+ +.|.+|++....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~----- 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK----- 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTT-----
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC-----
Confidence 3566663 4678999866 556543 333 467788899999993 56666664 688888764320
Q ss_pred cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
+.+... .....+...+..+++ +|++|++++..+ +.|.+|++...... ..+
T Consensus 87 ------------------g~~~~~-------~~~~~~~~~p~~~~~--dg~~l~~~~~~~--~~v~~~~~~~~g~~-~~~ 136 (361)
T 3scy_A 87 ------------------GTLHLL-------NTQKTMGADPCYLTT--NGKNIVTANYSG--GSITVFPIGQDGAL-LPA 136 (361)
T ss_dssp ------------------TEEEEE-------EEEECSSSCEEEEEE--CSSEEEEEETTT--TEEEEEEBCTTSCB-CSC
T ss_pred ------------------CcEEEe-------eEeccCCCCcEEEEE--CCCEEEEEECCC--CEEEEEEeCCCCcC-ccc
Confidence 111100 112234556777888 888888777432 39999999754332 111
Q ss_pred ----cc-----------CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe-------EE------EEEeCCCCCeEEE
Q 005235 537 ----KL-----------HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR-------LI------KKLETGLKEVSSI 586 (707)
Q Consensus 537 ----~~-----------~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~-------~~------~~l~~~~~~I~sl 586 (707)
.+ ...+.+++|+|++++|+++. ++.|.+|++.... +. .........+.++
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (361)
T 3scy_A 137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL 216 (361)
T ss_dssp SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence 11 23458899999999887766 6899999887532 21 1122334568899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEECCCCCcc--eEEee---cCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccCC
Q 005235 587 AIHPAGDNLIVGS-REGKLCWFDMDLSSKP--YRVLK---CHPKDITNVAFHRSYPLFASCSD--DCTAYVFHGMVYSDL 658 (707)
Q Consensus 587 ~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~--~~~l~---~h~~~I~~vafspdg~llaSgs~--Dg~I~Vwd~~~~~Dl 658 (707)
+|+|+|++|++++ .++.|.+||+.++ .. +..+. .+.....+++|+|+|++|+++.. +++|.||++. .
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~----~ 291 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD----E 291 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC----T
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc----C
Confidence 9999999888777 6899999999854 32 22232 23355789999999998866554 5899999653 1
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
.++. ...+..+.. ... +.+++|+|+|++|++++ .++.|.+|.
T Consensus 292 ~~g~-~~~~~~~~~-g~~----~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 292 TNGT-LTKVGYQLT-GIH----PRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp TTCC-EEEEEEEEC-SSC----CCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCc-EEEeeEecC-CCC----CceEEECCCCCEEEEEECCCCCEEEEE
Confidence 1222 123444444 233 88999999999998887 678999975
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4.3e-19 Score=203.44 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=179.5
Q ss_pred EEEEEeC-CCcEEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeee
Q 005235 390 LEYKGST-DGTVRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 390 ~l~sgs~-DgtVrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.|+.++. ||+++||++.+|++.+...+. ..|.+++|+||. .++++.. +....||.+....
T Consensus 35 ~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~--~l~~~~~~~g~~~~~l~~~~~~~------------- 99 (582)
T 3o4h_A 35 KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR--VILVRDVSKGAEQHALFKVNTSR------------- 99 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSE--EEEEEECSTTSCCEEEEEEETTS-------------
T ss_pred eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCe--EEEEeccCCCCcceEEEEEeccC-------------
Confidence 6666655 999999999777765544444 589999999983 4555543 3444555432200
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP 542 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V 542 (707)
.+... .......+...+|+|+|+. +++++.+ .+.|||+.++... ....+..
T Consensus 100 ------------------~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~----~~~l~d~~~g~~~-~l~~~~~-- 152 (582)
T 3o4h_A 100 ------------------PGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATED----RVALYALDGGGLR-ELARLPG-- 152 (582)
T ss_dssp ------------------TTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSS----CEEEEEEETTEEE-EEEEESS--
T ss_pred ------------------CCccc--cccCCCCceeeeeCCCCCeEEEEecCCC----CceEEEccCCcEE-EeecCCC--
Confidence 00111 1122223446688888864 4444433 4459999888654 3333333
Q ss_pred EEEEEeCCCCEEEEEe-C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcc
Q 005235 543 VSSVFHPTRSIFFVST-K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG--KLCWFDMDLSSKP 615 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg--~I~vwDl~~~~~~ 615 (707)
.+++|+|||++|++++ + +.|++||+.+++.. .+..+...+.+++|||||+.|++++.++ .|++||+.++ .+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~ 230 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SV 230 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cE
Confidence 8899999999999765 5 68999999988754 6777878899999999999999888888 8999999876 44
Q ss_pred eEEeecCCCCEEEEE--------EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235 616 YRVLKCHPKDITNVA--------FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687 (707)
Q Consensus 616 ~~~l~~h~~~I~~va--------fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs 687 (707)
. .+..|...+.+++ |+|+|.++++++.||+++||++ +.. +. .+... |.+++|+
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--------g~~---~~---~~~~~----v~~~~~s 291 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--------GER---VE---APQGN----HGRVVLW 291 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--------TEE---EC---CCSSE----EEEEEEE
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--------CCe---ec---cCCCc----eEEEEec
Confidence 4 7778877777777 9999999999999999999954 111 11 22233 8999999
Q ss_pred CCCCEEEEEeCCCc---EEEEe
Q 005235 688 PRQPWLFTAGADSV---IRLYC 706 (707)
Q Consensus 688 pdg~~L~s~g~Dg~---IrlWd 706 (707)
++.++++++.+.+ |.+|+
T Consensus 292 -dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 292 -RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp -TTEEEEEEEETTEEEEEEEET
T ss_pred -CCEEEEEEcCCCCCCeEEEEc
Confidence 9999999888754 55554
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=1.7e-17 Score=176.04 Aligned_cols=239 Identities=12% Similarity=0.059 Sum_probs=178.1
Q ss_pred EEecCCcEEEEEEccCCCccEEEEEe-------CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc
Q 005235 413 VLEIGEAIQYVAWNPLPELPVLAVSV-------GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK 485 (707)
Q Consensus 413 ~l~~~~~V~~v~~spdg~~~lla~s~-------d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~ 485 (707)
.......+..++|+|++. .+++++. ++.|.+||+.++..
T Consensus 36 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~--------------------------------- 81 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEV--------------------------------- 81 (353)
T ss_dssp EEEEESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCE---------------------------------
T ss_pred hhhhccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------------
Confidence 344466788999999994 5555553 45777777655421
Q ss_pred cceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee-ccCC---------CeEEEEEeCCCCEE
Q 005235 486 LDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF-KLHG---------LPVSSVFHPTRSIF 554 (707)
Q Consensus 486 ~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~-~~~~---------~V~~v~fspd~~~l 554 (707)
.........+..++|+++|+++++++. ++ .|.+||+.++... ..+ .+.+ .+.+++|+|++.++
T Consensus 82 --~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 155 (353)
T 3vgz_A 82 --TQAIHNDLKPFGATINNTTQTLWFGNTVNS---AVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVADDATNTV 155 (353)
T ss_dssp --EEEEEESSCCCSEEEETTTTEEEEEETTTT---EEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred --EEEEecCCCcceEEECCCCCEEEEEecCCC---EEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEECCCCCEE
Confidence 112223445788999999997766655 44 9999999998876 555 2221 26889999999988
Q ss_pred EEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEE
Q 005235 555 FVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDIT 627 (707)
Q Consensus 555 ~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~ 627 (707)
+++. ++.|.+||+.+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.++ +....+.. +...+.
T Consensus 156 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~ 234 (353)
T 3vgz_A 156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFI 234 (353)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEE
T ss_pred EEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccc
Confidence 8775 688999999999999888755566889999999999999999999999999877 56666654 556788
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q 005235 628 NVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLY 705 (707)
Q Consensus 628 ~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlW 705 (707)
+++|+|++.++++++ .++.|.+||. .+... +..+..+. ..+++|+|++.+|+.++ .++.|.+|
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~------~~~~~---~~~~~~~~------~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDT------RNGNI---LAKVAAPE------SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEET------TTCCE---EEEEECSS------CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEC------CCCcE---EEEEEcCC------CceEEECCCCCEEEEEECCCCeEEEE
Confidence 999999999666555 5599999954 34433 44444332 35689999999776555 68999999
Q ss_pred eC
Q 005235 706 CH 707 (707)
Q Consensus 706 dl 707 (707)
|+
T Consensus 300 d~ 301 (353)
T 3vgz_A 300 DA 301 (353)
T ss_dssp ET
T ss_pred EC
Confidence 85
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=1.2e-17 Score=176.17 Aligned_cols=234 Identities=9% Similarity=0.083 Sum_probs=164.7
Q ss_pred EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE
Q 005235 423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW 502 (707)
Q Consensus 423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~ 502 (707)
..|.+++...+++.+.++.|.+||+.++... .....+...+ +++|
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----------------------------------~~~~~~~~~~-~~~~ 47 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL----------------------------------NQITLGYDFV-DTAI 47 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE----------------------------------EEEECCCCEE-EEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee----------------------------------eeEEccCCcc-eEEE
Confidence 3456666434555556788999987665321 1122234455 9999
Q ss_pred cCCCCEEEEEeC-CCCccEEEEEECCCCce-eeeee-ccCCCeEEEEEeCCCCEEEEEeCC----eEEEEECCCCeEEEE
Q 005235 503 HRRGDYLSTVMP-AGESRAIFMHQLSKKLS-HRIPF-KLHGLPVSSVFHPTRSIFFVSTKK----NIRVYDLLKQRLIKK 575 (707)
Q Consensus 503 sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~-~~~~~-~~~~~V~~v~fspd~~~l~v~sdg----~I~iwDl~~~~~~~~ 575 (707)
+|+|+++++++. ++ .|.+||+.++.. . ..+ .+..+..+++|+|++++|+++.++ .|.+||+.+++.+..
T Consensus 48 s~dg~~l~~~~~~~~---~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 48 TSDCSNVVVTSDFCQ---TLVQIETQLEPPKV-VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp CSSSCEEEEEESTTC---EEEEEECSSSSCEE-EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEeCCCC---eEEEEECCCCceeE-EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 999998877776 45 999999998886 4 556 444555559999999999965533 899999999998888
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEE-ECCCc-EEEEECCCCCcce---EEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEE
Q 005235 576 LETGLKEVSSIAIHPAGDNLIVG-SREGK-LCWFDMDLSSKPY---RVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYV 649 (707)
Q Consensus 576 l~~~~~~I~sl~~spdg~~L~sG-s~Dg~-I~vwDl~~~~~~~---~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~V 649 (707)
+..+ ..+.+++|+|+|++|+++ ..++. |.+|++....... .....+.....+++|+|+|+++ +++..++.|.+
T Consensus 124 ~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 124 IPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp EECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 8765 457999999999865554 55688 9999998653322 1122345568999999999954 55557899999
Q ss_pred EecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235 650 FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl 707 (707)
|+. .+.....++..+..+.. +.+++|+|+|++|+.++ .++.|.+||+
T Consensus 203 ~d~------~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 203 LET------QNPENITLLNAVGTNNL-----PGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EEC------SSTTSCEEEEEEECSSC-----CCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred EEC------CCCcccceeeeccCCCC-----CceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 954 33333223555655432 78999999999876654 5788999984
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.6e-19 Score=207.51 Aligned_cols=267 Identities=11% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC----cEEEEEEccCCCccEEEEEe---------CCeEEEEECCCCCc
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE----AIQYVAWNPLPELPVLAVSV---------GQDVLILNTGLGNE 452 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~----~V~~v~~spdg~~~lla~s~---------d~~V~lwd~~~~~~ 452 (707)
.++.++++ +.|++|++||+.+|++...+.... .|.+++|||||+ .|+.++. ++.|.+|++.++..
T Consensus 25 ~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 25 SGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 34455555 469999999999999887776632 489999999994 5555554 47788888766521
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH 532 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~ 532 (707)
. ........+.+++|||+|++||++. ++ .|++|++.++...
T Consensus 103 ~-----------------------------------~~~~l~~~~~~~~~SPDG~~la~~~-~~---~i~~~~~~~g~~~ 143 (719)
T 1z68_A 103 V-----------------------------------RGNELPRPIQYLCWSPVGSKLAYVY-QN---NIYLKQRPGDPPF 143 (719)
T ss_dssp C-----------------------------------CSSCCCSSBCCEEECSSTTCEEEEE-TT---EEEEESSTTSCCE
T ss_pred c-----------------------------------cceecCcccccceECCCCCEEEEEE-CC---eEEEEeCCCCCcE
Confidence 0 0001124688899999999999986 45 9999999887664
Q ss_pred eeee-ccCCC-----------------eEEEEEeCCCCEEEEEe-CC---------------------------------
Q 005235 533 RIPF-KLHGL-----------------PVSSVFHPTRSIFFVST-KK--------------------------------- 560 (707)
Q Consensus 533 ~~~~-~~~~~-----------------V~~v~fspd~~~l~v~s-dg--------------------------------- 560 (707)
.... ++... ..+++|+|||+.|++++ +.
T Consensus 144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~ 223 (719)
T 1z68_A 144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV 223 (719)
T ss_dssp ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence 1222 22222 25899999999999876 42
Q ss_pred -eEEEEECCCCeEE--EE------EeCCCCCeEEEEEcCCCCEEEEEECCC----cEEEEE----CCCCCcceEEe----
Q 005235 561 -NIRVYDLLKQRLI--KK------LETGLKEVSSIAIHPAGDNLIVGSREG----KLCWFD----MDLSSKPYRVL---- 619 (707)
Q Consensus 561 -~I~iwDl~~~~~~--~~------l~~~~~~I~sl~~spdg~~L~sGs~Dg----~I~vwD----l~~~~~~~~~l---- 619 (707)
.|++||+.+++.. .. +.++...+.+++|+|||.++++....+ .|.+|| +.++ ++...+
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~ 302 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIE 302 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEeccc
Confidence 7889999887642 11 234667799999999987777754332 488899 7655 333333
Q ss_pred ecCCCCEE-----EEEEcCCCCEEE--EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 620 KCHPKDIT-----NVAFHRSYPLFA--SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 620 ~~h~~~I~-----~vafspdg~lla--Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
..|...+. .++|+|+|+.|+ ++..+|...||-. ++.... ...+..+... |..+.++ ++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~----~~~~~~----~~~lt~~~~~----v~~~~~~-d~~~ 369 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYI----KDTVEN----AIQITSGKWE----AINIFRV-TQDS 369 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEE----SSCSTT----CEECSCSSSC----EEEEEEE-CSSE
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEE----ECCCCc----eEecccCceE----EEEEEEE-eCCE
Confidence 46777676 889999999544 4556675555432 333332 3455555444 8888888 8888
Q ss_pred EEEEeCC-----CcEEEEeC
Q 005235 693 LFTAGAD-----SVIRLYCH 707 (707)
Q Consensus 693 L~s~g~D-----g~IrlWdl 707 (707)
|+..+.+ +.++||.+
T Consensus 370 i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 370 LFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EEEEESCGGGCTTCBEEEEE
T ss_pred EEEEEecCCCCCceEEEEEE
Confidence 8766655 88899863
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.5e-18 Score=197.06 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=168.6
Q ss_pred CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC-
Q 005235 417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF- 494 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~- 494 (707)
..+|.+++|+|||. .|+.++. ++++.||++.++. ...+..|.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~-----------------------------------~~~lt~~~~ 64 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGE-----------------------------------TVKLNREPI 64 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTE-----------------------------------EEECCSSCC
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCC-----------------------------------cEeeecccc
Confidence 45799999999994 5666665 8999999864331 11223444
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--CceeeeeeccCCCeEEEEEeCCCCE--EEEEeCCeEEEEECCCC
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK--KLSHRIPFKLHGLPVSSVFHPTRSI--FFVSTKKNIRVYDLLKQ 570 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~--~~~~~~~~~~~~~V~~v~fspd~~~--l~v~sdg~I~iwDl~~~ 570 (707)
..+.+++|+|+ +.+++++.++......||.+.. .... ..+.....+...+|+|++.. ++++.++.+.+||+.++
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g 142 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG 142 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence 57899999999 6677666533234455555433 2222 33322233456788888864 33334666679999988
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC-
Q 005235 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC- 645 (707)
Q Consensus 571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg- 645 (707)
++......+ . .+++|||||++|++++.+ +.|++||+.++ . ...+..|...+.+++|||||++|++++.++
T Consensus 143 ~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 143 GLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred cEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 766555433 2 789999999999988877 78999999876 3 457888999999999999999999888888
Q ss_pred -cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE--------EcCCCCEEEEEeCCCcEEEEeC
Q 005235 646 -TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK--------FHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 646 -~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~--------fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.|++| |+.++.. . .+.+|... +.+++ |+|||.++++++.||+++||++
T Consensus 218 ~~i~~~------d~~~~~~---~-~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 218 ARLVTV------DPRDGSV---E-DLELPSKD----FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEE------CTTTCCE---E-ECCCSCSH----HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred eEEEEE------cCCCCcE---E-EccCCCcC----hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 88999 4444443 3 56666654 66666 9999988999999999999975
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=4.2e-17 Score=175.77 Aligned_cols=269 Identities=12% Similarity=0.074 Sum_probs=176.6
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEE--EEe--cCCcEEEEEEccCCCccEEEEEeCCeEEEEECC-CCCchhcccccc
Q 005235 390 LEYKGSTD--GTVRIWEV--ESGRCLR--VLE--IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTG-LGNEEEQRRVKD 460 (707)
Q Consensus 390 ~l~sgs~D--gtVrIWd~--~tg~~l~--~l~--~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~-~~~~~~~~~~~~ 460 (707)
.+|.|+.. +.|.+|++ .+|+... ... ....+..++|+|+|. .|++++.+ .|.+|++. ++...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~------- 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIV------- 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEE-------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEE-------
Confidence 56677653 56887664 5776532 222 134788999999993 56666666 99999975 33110
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEe-------------CCCCccEEEEEE
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVM-------------PAGESRAIFMHQ 525 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s-------------~dg~~~~V~Iwd 525 (707)
.+. .... .+.+.+++|+|+|++ ++++. .++ .+.+|+
T Consensus 75 -----------------~~~--------~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g---~v~v~~ 125 (365)
T 1jof_A 75 -----------------HEA--------SHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG---YGNVFS 125 (365)
T ss_dssp -----------------EEE--------EEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC---EEEEEE
T ss_pred -----------------Eee--------Eeec-CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc---eEEEEc
Confidence 000 0001 123556899999995 44442 455 899999
Q ss_pred CCC-Cceeeeee-----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC-CCeEE--EEEe--CCCCCeEEEEEcCCC
Q 005235 526 LSK-KLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL-KQRLI--KKLE--TGLKEVSSIAIHPAG 592 (707)
Q Consensus 526 l~~-~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~-~~~~~--~~l~--~~~~~I~sl~~spdg 592 (707)
+.. +... ..+ .+...+.+++|+|+|++|+++. ++.|++||+. ++++. ..+. .+...+..++|+|+|
T Consensus 126 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 126 VSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp ECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred cCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 974 4433 233 2456899999999999988876 5899999998 67643 3343 234668999999999
Q ss_pred CEEEEEEC-CCcEEEEECCCC-Ccce---EEee-------cCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cE
Q 005235 593 DNLIVGSR-EGKLCWFDMDLS-SKPY---RVLK-------CHPK------DITNVA-FHRSYPLFASCSDD-C-----TA 647 (707)
Q Consensus 593 ~~L~sGs~-Dg~I~vwDl~~~-~~~~---~~l~-------~h~~------~I~~va-fspdg~llaSgs~D-g-----~I 647 (707)
++|++++. ++.|.+|+++.. .+.. ..+. +|.. .+.+++ |+|+|++|++++.+ . +|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 99988775 688999987632 1321 1222 1222 588999 99999987766533 2 89
Q ss_pred EEEecccccCCCCCCcccceE-EeeCCCCCCCCCeeEEEEcC---CCCEEEEEeCC-CcEEEEeC
Q 005235 648 YVFHGMVYSDLNQNPLIVPLE-ILRGHTSSNGRGVMDCKFHP---RQPWLFTAGAD-SVIRLYCH 707 (707)
Q Consensus 648 ~Vwd~~~~~Dl~~~~~~~pl~-~l~gh~~~~~~gV~~l~fsp---dg~~L~s~g~D-g~IrlWdl 707 (707)
.+|++.. ++.+ ..+. .+..+... +..++|+| +|++|++++.+ ++|.+|++
T Consensus 285 ~v~~~~~-----~g~~-~~~~~~~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 285 AGFKLRD-----CGSI-EKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECT-----TSCE-EEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEECC-----CCCE-EEeeeeeecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 9996531 2222 1111 23333332 67789999 89999999865 89999974
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=2.2e-17 Score=193.40 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=183.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-----CCch--hcccccc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-----GNEE--EQRRVKD 460 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-----~~~~--~~~~~~~ 460 (707)
..++++ .+++|++||+.++++.........+.+++|+|||. .++.+.++.|.+|++.+ +... .......
T Consensus 93 ~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~--~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 93 GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD--RVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS--EEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCC--EEEEEECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 345554 35999999999998876666677899999999993 45557899999999987 5432 1111111
Q ss_pred --------------eeeeccc-----ccccC---------------------------------CCCcEEEEecCCccce
Q 005235 461 --------------LLHVETP-----TAPDD---------------------------------NMASIVSWLQHDKLDG 488 (707)
Q Consensus 461 --------------v~~~~~~-----~~~~~---------------------------------~d~~i~iW~~~~~~~~ 488 (707)
+..+.|+ ++.++ .+..+.+|++.++...
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 2344444 33332 3467899999876654
Q ss_pred EEe---ccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee--ccCC---CeEEEEEeC--CCCEEEE
Q 005235 489 IRL---RHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF--KLHG---LPVSSVFHP--TRSIFFV 556 (707)
Q Consensus 489 ~~~---~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~--~~~~---~V~~v~fsp--d~~~l~v 556 (707)
.+. .|...+.+++|+|+|++|++++.+. ....|.+||+.++......+ .... .+.+++|+| ++.++++
T Consensus 249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~ 328 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ 328 (706)
T ss_dssp ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence 322 4667899999999999999877553 23489999999883331333 2222 246789999 9998888
Q ss_pred Ee-CCeEEEEECC-CCeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECC-C----cEEEEECCCCCcceEEeecCCCCEEE
Q 005235 557 ST-KKNIRVYDLL-KQRLIKKLETGLKEVSS-IAIHPAGDNLIVGSRE-G----KLCWFDMDLSSKPYRVLKCHPKDITN 628 (707)
Q Consensus 557 ~s-dg~I~iwDl~-~~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~D-g----~I~vwDl~~~~~~~~~l~~h~~~I~~ 628 (707)
+. ++.++||.+. ++..+..+..+...+.+ ++|+|+|+.|++++.+ + .|..||+.++ . ...+. |...+.+
T Consensus 329 ~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~-~~~~~~~ 405 (706)
T 2z3z_A 329 SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-K-TKDLT-PESGMHR 405 (706)
T ss_dssp ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-C-CEESC-CSSSEEE
T ss_pred EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-C-ceecc-CCCceEE
Confidence 87 7888888876 56777788877777876 8999999988766554 3 5667777654 3 44454 6778999
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEecc
Q 005235 629 VAFHRSYPLFASCSDD----CTAYVFHGM 653 (707)
Q Consensus 629 vafspdg~llaSgs~D----g~I~Vwd~~ 653 (707)
++|||+|++|+.++.+ +.|++|+..
T Consensus 406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 9999999988766433 469999754
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=1.4e-17 Score=184.41 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=157.0
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI 477 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i 477 (707)
+.|++|+... . + ....++.+++++++ .+++++....|.+|+........ ........+
T Consensus 23 ~~vri~~~~~-~----~-~~~~~n~lavs~~~--~~l~~~~~dgv~v~~~~~~~~~~--------------~~~~~~~~~ 80 (434)
T 2oit_A 23 KKVRIFDSPE-E----L-PKERSSLLAVSNKY--GLVFAGGASGLQIFPTKNLLIQN--------------KPGDDPNKI 80 (434)
T ss_dssp CEEECSCCCS-S----C-CCSCCBCEEEETTT--TEEEEEETTEEEEEEHHHHCCCC--------------CTTCCTTCE
T ss_pred eeEEecCCcc-c----c-CCCCccEEEEecCC--CEEEEECCCEEEEEEchHhhhhc--------------ccccCcccc
Confidence 4688876431 1 1 13467899999988 34444444458888753210000 000000011
Q ss_pred EEEecCCccceEEeccCCCeEEEEEcCCCCEEE----EEeCCCCccEEEEEECCCC--------cee--eeee-ccCCCe
Q 005235 478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS----TVMPAGESRAIFMHQLSKK--------LSH--RIPF-KLHGLP 542 (707)
Q Consensus 478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la----t~s~dg~~~~V~Iwdl~~~--------~~~--~~~~-~~~~~V 542 (707)
... .......+...|.+++|+|+|++|+ +++.|+ .|+|||+.+. +.. ...+ .|...|
T Consensus 81 --~~~---~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V 152 (434)
T 2oit_A 81 --VDK---VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS---IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV 152 (434)
T ss_dssp --EEC---CCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE---EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE
T ss_pred --ccc---CccccccCCCcccEEEEcCCCCEEEEEEeccCCCc---eEEEEEccccccCCcCCcceeeeeeccCCCCCce
Confidence 100 0112346778899999999999999 566666 9999998654 111 1334 688999
Q ss_pred EEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 543 VSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 543 ~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
.+++|+|+ +.+|++++ |++|++||++++..+....+|...|++++|+|+|.+|++|+.||.|++||++ + .....+.
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~ 230 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIP 230 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C-CEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-ccccccc
Confidence 99999998 78888888 9999999999997777777888899999999999999999999999999998 4 4455555
Q ss_pred cCC-------CCEEEEEEcCCCCEEEE-EeCCCc------EEEEecc
Q 005235 621 CHP-------KDITNVAFHRSYPLFAS-CSDDCT------AYVFHGM 653 (707)
Q Consensus 621 ~h~-------~~I~~vafspdg~llaS-gs~Dg~------I~Vwd~~ 653 (707)
.|. ..|.+++|++++.++++ ++.||. +++|++.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 442 37999999998887754 334443 8999765
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=3e-17 Score=172.45 Aligned_cols=218 Identities=9% Similarity=0.055 Sum_probs=162.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCC------cEEEEEEccCCCccEEEEE------------eCCeEEEEECCCC
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE------AIQYVAWNPLPELPVLAVS------------VGQDVLILNTGLG 450 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~------~V~~v~~spdg~~~lla~s------------~d~~V~lwd~~~~ 450 (707)
.++++++.++.|.+||+.+++.+..+.... .+.+++|+|+|. .++++. .++.|.+|++.++
T Consensus 47 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 125 (337)
T 1pby_B 47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETL 125 (337)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred EEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCC
Confidence 456677788999999999999988887643 678999999994 455554 3577777776543
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL 530 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~ 530 (707)
. ..........+.+++|+|+|++|+++ ++ .|.+||+.++.
T Consensus 126 ~-----------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~---~i~~~d~~~~~ 165 (337)
T 1pby_B 126 S-----------------------------------RRKAFEAPRQITMLAWARDGSKLYGL--GR---DLHVMDPEAGT 165 (337)
T ss_dssp E-----------------------------------EEEEEECCSSCCCEEECTTSSCEEEE--SS---SEEEEETTTTE
T ss_pred c-----------------------------------EEEEEeCCCCcceeEECCCCCEEEEe--CC---eEEEEECCCCc
Confidence 1 11122234567889999999988887 34 89999999887
Q ss_pred eeeeeeccCCCeEEEEEeCCCCEEEEEe--CC-----------------------eEEEEECCCCeEE-EEEeCCCCCeE
Q 005235 531 SHRIPFKLHGLPVSSVFHPTRSIFFVST--KK-----------------------NIRVYDLLKQRLI-KKLETGLKEVS 584 (707)
Q Consensus 531 ~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg-----------------------~I~iwDl~~~~~~-~~l~~~~~~I~ 584 (707)
.. ..+........+.|+|++..++++. ++ .|.+||+.+++.. ..+..+...+.
T Consensus 166 ~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 244 (337)
T 1pby_B 166 LV-EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EE-EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred Ee-eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence 66 5552221112337899988776554 22 4789999998764 23445556788
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+++|+|+|++|+++ ++.|.+||+.++ +....+..+ ..+.+++|+|++++|++++.++.|.+|+.
T Consensus 245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 245 STAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 99999999999988 689999999876 666666543 45789999999999988899999999954
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=6.3e-18 Score=187.24 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=149.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----------cee-----eeeeccCCCeEEEEEeCCCCEEE---
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----------LSH-----RIPFKLHGLPVSSVFHPTRSIFF--- 555 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----------~~~-----~~~~~~~~~V~~v~fspd~~~l~--- 555 (707)
...+..+++++++.++++++.++ ++||+.... ... ...+.+.+.|.+++|+|++.+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM 111 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE----EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence 34688999999999999998754 778764311 000 01124567899999999999999
Q ss_pred -EEe-CCeEEEEECCCC--------e---EEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235 556 -VST-KKNIRVYDLLKQ--------R---LIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 556 -v~s-dg~I~iwDl~~~--------~---~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
+++ |+.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++ .......+
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~ 190 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLP 190 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEEC
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccC
Confidence 455 899999998654 2 24555678889999999998 799999999999999999977 55556667
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC---CCCeeEEEEcCCCCEEEEE-e
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN---GRGVMDCKFHPRQPWLFTA-G 697 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~---~~gV~~l~fspdg~~L~s~-g 697 (707)
|...|++++|+|+|.+||+|+.||+|++||.+ .. ....+..|.... ...|.+++|++++.++++. +
T Consensus 191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-------~~---~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-------LQ---EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-------CC---EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-------Cc---ccccccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence 88999999999999999999999999999543 11 133444432210 1239999999998887553 4
Q ss_pred CCCc------EEEEeC
Q 005235 698 ADSV------IRLYCH 707 (707)
Q Consensus 698 ~Dg~------IrlWdl 707 (707)
.||. +++|++
T Consensus 261 ~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 261 ADGTLETSPDVVMALL 276 (434)
T ss_dssp TTCCSSSCCEEEEEEC
T ss_pred CCCccCCCCceEEEEe
Confidence 4543 889875
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=7.5e-16 Score=163.84 Aligned_cols=240 Identities=10% Similarity=0.089 Sum_probs=159.5
Q ss_pred CCcEEEEEe--CCCcEEEEeCCCCeE--EEEEe-cCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235 387 ACYLEYKGS--TDGTVRIWEVESGRC--LRVLE-IGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD 460 (707)
Q Consensus 387 ~~~~l~sgs--~DgtVrIWd~~tg~~--l~~l~-~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~ 460 (707)
++.+++++. .++.|++|++.++.. +..+. ....+.+++|+|+|. .|++++ .++.|.+|++.......
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~------ 122 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT------ 122 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE------
T ss_pred CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee------
Confidence 445444433 268999999987763 33322 367889999999994 566666 57899999975321100
Q ss_pred eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-CCceee-eee--
Q 005235 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-KKLSHR-IPF-- 536 (707)
Q Consensus 461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-~~~~~~-~~~-- 536 (707)
.+........... ...+...+.+++|+|+|+.+++...++ .|.+|++. .+.... ..+
T Consensus 123 ---------------~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~---~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 123 ---------------LTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSD---KVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp ---------------EEEEEECCCCCSS-TTCSSCCEEEEEECTTSCEEEEETTTT---EEEEEEECTTSCEEEEEEEEC
T ss_pred ---------------ecceeecCCCCCC-ccccCCCceEEEECCCCcEEEEeCCCC---EEEEEEECCCCcEEEeeeEEc
Confidence 0000000000000 001234588999999999555555555 99999998 443321 122
Q ss_pred ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeCCC------CCeEEEEEcCCCCEE-EEEECCCc
Q 005235 537 KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLETGL------KEVSSIAIHPAGDNL-IVGSREGK 603 (707)
Q Consensus 537 ~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~~~------~~I~sl~~spdg~~L-~sGs~Dg~ 603 (707)
.....+..++|+|+|++|++++ ++.|.+|++.. ++. +..+.... ..+.+++|+|+|++| +++..++.
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 3344678899999999887765 68999999874 543 33333322 348899999999987 45566899
Q ss_pred EEEEECCCCC--cceEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 005235 604 LCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYPLFASCSD-DCTAYVFHG 652 (707)
Q Consensus 604 I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~ 652 (707)
|.+|++.... ..+..+..+...+.+++|+|+|++|++++. ++.|.+|++
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 9999997322 445566666677899999999998877765 589999965
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=5.3e-16 Score=166.14 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=160.0
Q ss_pred cCCCCcEEEEEeCC----CcEEEEeCCC--CeE--EEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCch
Q 005235 384 YPVACYLEYKGSTD----GTVRIWEVES--GRC--LRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEE 453 (707)
Q Consensus 384 fp~~~~~l~sgs~D----gtVrIWd~~t--g~~--l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~ 453 (707)
|..++.+||+++.+ +.|.+|++.. |.. +..... ...+..+++ ++. .+++++ .++.|.+|++......
T Consensus 57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~ 133 (361)
T 3scy_A 57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGAL 133 (361)
T ss_dssp ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCB
T ss_pred ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcC
Confidence 34455678888775 8999998865 543 333332 456788888 663 455555 5789999998653211
Q ss_pred hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCce-
Q 005235 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLS- 531 (707)
Q Consensus 454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~- 531 (707)
.. ........+........+...+.+++|+|+|++|++++. ++ .|.+|++.....
T Consensus 134 ~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~v~v~~~~~~~~~ 190 (361)
T 3scy_A 134 LP--------------------ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD---QIHKFNINPNANA 190 (361)
T ss_dssp CS--------------------CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT---EEEEEEECTTCCT
T ss_pred cc--------------------cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC---EEEEEEEcCCCCc
Confidence 00 000000000000001123445788999999998877664 44 999999875431
Q ss_pred ------------eeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeE--EEEEeC---CCCCeEEEEEcCCC
Q 005235 532 ------------HRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRL--IKKLET---GLKEVSSIAIHPAG 592 (707)
Q Consensus 532 ------------~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~--~~~l~~---~~~~I~sl~~spdg 592 (707)
....+.....+..++|+|+++++++++ ++.|.+|++.++++ +..+.. +...+.+++|+|+|
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg 270 (361)
T 3scy_A 191 DNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG 270 (361)
T ss_dssp TTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred ccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC
Confidence 102225556788999999999888876 79999999987754 333332 23457899999999
Q ss_pred CEEEEEECC--CcEEEEECCC--CC-cceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235 593 DNLIVGSRE--GKLCWFDMDL--SS-KPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG 652 (707)
Q Consensus 593 ~~L~sGs~D--g~I~vwDl~~--~~-~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~ 652 (707)
++|+++..+ +.|.+|+++. +. ..+..+.. ...+++++|+|+|++|++++ .++.|.+|.+
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 999776654 8899999963 21 23444444 45688999999999888777 6789999855
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=6.3e-18 Score=198.55 Aligned_cols=279 Identities=11% Similarity=0.090 Sum_probs=181.8
Q ss_pred cEEEEEeC---------CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 389 YLEYKGST---------DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 389 ~~l~sgs~---------DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
.+|+.++. +++|++||+.+|+++........+.+++|||||. .++.+.++.|++|++.++......
T Consensus 72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~--~la~~~~~~i~~~~~~~g~~~~l~--- 146 (719)
T 1z68_A 72 QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS--KLAYVYQNNIYLKQRPGDPPFQIT--- 146 (719)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT--CEEEEETTEEEEESSTTSCCEECC---
T ss_pred CeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC--EEEEEECCeEEEEeCCCCCcEEEe---
Confidence 36666554 7899999999998732122346789999999993 455557899999998765331000
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCC---------CeEEEEEcCCCCEEEEEeCCC--------------
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK---------MVSSVEWHRRGDYLSTVMPAG-------------- 516 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~---------~V~~v~~sp~g~~lat~s~dg-------------- 516 (707)
..+....+..++.. ...+++|||+|++|++++.+.
T Consensus 147 ----------------------~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 147 ----------------------FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp ----------------------CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred ----------------------cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 00000001123322 236899999999999988652
Q ss_pred -----------------CccEEEEEECCCCcee---ee----ee-ccCCCeEEEEEeCCCCEEEEEeC-----CeEEEEE
Q 005235 517 -----------------ESRAIFMHQLSKKLSH---RI----PF-KLHGLPVSSVFHPTRSIFFVSTK-----KNIRVYD 566 (707)
Q Consensus 517 -----------------~~~~V~Iwdl~~~~~~---~~----~~-~~~~~V~~v~fspd~~~l~v~sd-----g~I~iwD 566 (707)
....|.+||+.++... .. .+ .+...+.+++|+|++.+++++.+ ..|.+||
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 1237889999887641 01 12 46678899999999877776542 3488999
Q ss_pred ----CCCCeEEEEE----eCCCCCeE-----EEEEcCCCCEEEE--EECCC--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 567 ----LLKQRLIKKL----ETGLKEVS-----SIAIHPAGDNLIV--GSREG--KLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 567 ----l~~~~~~~~l----~~~~~~I~-----sl~~spdg~~L~s--Gs~Dg--~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
+.++++...+ ..+..++. +++|+|+|+.|+. +..+| .|.+||+..+ . ...+..+...+..+
T Consensus 285 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~lt~~~~~v~~~ 362 (719)
T 1z68_A 285 FREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQITSGKWEAINI 362 (719)
T ss_dssp ECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-T-CEECSCSSSCEEEE
T ss_pred ccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-c-eEecccCceEEEEE
Confidence 8777655444 35666776 8899999996654 44555 4677777654 3 56677677778888
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEecccccCCCCCCcccceEEee----CCCCCCCCCeeEEEEcCCCCEEEE-EeCC
Q 005235 630 AFHRSYPLFASCSDD-----CTAYVFHGMVYSDLNQNPLIVPLEILR----GHTSSNGRGVMDCKFHPRQPWLFT-AGAD 699 (707)
Q Consensus 630 afspdg~llaSgs~D-----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~----gh~~~~~~gV~~l~fspdg~~L~s-~g~D 699 (707)
.++ ++..|+..+.+ +.++||.+.. ..+.. ....+. +|... +..+.|+|++++|+. ++.+
T Consensus 363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~----~~g~~--~~~~l~~~~~~~~~~----~~~~~~s~dg~~l~~~~s~~ 431 (719)
T 1z68_A 363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI----GSYPP--SKKCVTCHLRKERCQ----YYTASFSDYAKYYALVCYGP 431 (719)
T ss_dssp EEE-CSSEEEEEESCGGGCTTCBEEEEEEC----SSSSC--CEEESSTTTTTTTBC----BEEEEECGGGSSEEEEECCB
T ss_pred EEE-eCCEEEEEEecCCCCCceEEEEEEeC----CCCCC--CceeccCccCCCCCc----eEEEEECCCCCEEEEEcCCC
Confidence 888 77766665554 8899997642 11110 012222 24433 889999999987764 4333
Q ss_pred --CcEEEEeC
Q 005235 700 --SVIRLYCH 707 (707)
Q Consensus 700 --g~IrlWdl 707 (707)
..+.+|++
T Consensus 432 ~~p~~~l~d~ 441 (719)
T 1z68_A 432 GIPISTLHDG 441 (719)
T ss_dssp SSCEEEEECS
T ss_pred CCCeEEEEEC
Confidence 35677763
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1.6e-16 Score=171.41 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=175.1
Q ss_pred cCCCCcEEEEEeC-CCc--EEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235 384 YPVACYLEYKGST-DGT--VRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 384 fp~~~~~l~sgs~-Dgt--VrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~ 459 (707)
|+.++..|+.++. +|. |.+||+.+|+........ ..+.+++|+|+|. .|+.++.++.|.+|++.++...
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~------ 115 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEEN------ 115 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEE------
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcce------
Confidence 4445555665555 774 888899999887655553 3344678999994 6777777889999998775321
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE--EEcCCCCEEEEEeCC-------------------CCc
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV--EWHRRGDYLSTVMPA-------------------GES 518 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v--~~sp~g~~lat~s~d-------------------g~~ 518 (707)
.+ ...+...+... .++++|.+++....+ +..
T Consensus 116 ------------------~~----------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 116 ------------------VV----------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ------------------EE----------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred ------------------ee----------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 11 11223333333 348889888754311 123
Q ss_pred cEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEeC-------CeEEEEECCCCeEEEEEeCCC--CCeEEEEE
Q 005235 519 RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVSTK-------KNIRVYDLLKQRLIKKLETGL--KEVSSIAI 588 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~sd-------g~I~iwDl~~~~~~~~l~~~~--~~I~sl~~ 588 (707)
..|.+||+.++... ....+...+..++|+| ++..|+.+.. ..|.++|+..+.. ..+..+. ..+..++|
T Consensus 168 ~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 168 CRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW 245 (388)
T ss_dssp EEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred ceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence 58999999988654 3336677889999999 9998877652 2788888876543 3444443 25788999
Q ss_pred cCCCCEEEEEECC-C----cEEEEECCCCCc-ceEEeecCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEE
Q 005235 589 HPAGDNLIVGSRE-G----KLCWFDMDLSSK-PYRVLKCHPKD---ITNVAFHRSYPLFASC---------SDDCTAYVF 650 (707)
Q Consensus 589 spdg~~L~sGs~D-g----~I~vwDl~~~~~-~~~~l~~h~~~---I~~vafspdg~llaSg---------s~Dg~I~Vw 650 (707)
+|+|+.|+..+.. + .|++||+.++.. .+..+.++... ...++|+|+|+.|+.. ..+..|++|
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 9999987665442 2 399999987732 22222221000 1123799999977743 446689999
Q ss_pred ecccccCCCCCCcccceEEeeCCCCC-------CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 651 HGMVYSDLNQNPLIVPLEILRGHTSS-------NGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 651 d~~~~~Dl~~~~~~~pl~~l~gh~~~-------~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
+. .++. +..+..|... ....+.+++|+|+|++|+.++ .+|...||.
T Consensus 326 d~------~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 326 NM------KNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp ET------TTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ec------cCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 54 3332 3445555430 000178889999999887665 577777774
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=3.2e-15 Score=176.60 Aligned_cols=224 Identities=15% Similarity=0.070 Sum_probs=153.9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecC------CcEEEEEEccCCCccEEEEEeC---------CeEEEEECCCC
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIG------EAIQYVAWNPLPELPVLAVSVG---------QDVLILNTGLG 450 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~------~~V~~v~~spdg~~~lla~s~d---------~~V~lwd~~~~ 450 (707)
.++.+++++ ||+|++|++.+|++...+... .....++|||||. .|+.++.+ +.+.+||+.++
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEECCCC
Confidence 334578876 999999999999988777661 1234589999994 55555554 34445555443
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL 530 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~ 530 (707)
....+..|...+..++|||+|+.||.+. ++ .|.+|++.++.
T Consensus 103 -----------------------------------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~---~i~~~~~~~~~ 143 (740)
T 4a5s_A 103 -----------------------------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NN---DIYVKIEPNLP 143 (740)
T ss_dssp -----------------------------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TT---EEEEESSTTSC
T ss_pred -----------------------------------cEEEcccCCCcceeeEECCCCCEEEEEE-CC---eEEEEECCCCc
Confidence 3333445677899999999999999986 34 89999998877
Q ss_pred eeeeee-ccCCCe-----------------EEEEEeCCCCEEEEEe-C-C------------------------------
Q 005235 531 SHRIPF-KLHGLP-----------------VSSVFHPTRSIFFVST-K-K------------------------------ 560 (707)
Q Consensus 531 ~~~~~~-~~~~~V-----------------~~v~fspd~~~l~v~s-d-g------------------------------ 560 (707)
....++ ++...+ .++.|||||+.|+.++ | +
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 542233 332222 3589999999988764 2 2
Q ss_pred -----eEEEEECCC---Ce--EEEEEeC------CCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCC-----cc
Q 005235 561 -----NIRVYDLLK---QR--LIKKLET------GLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSS-----KP 615 (707)
Q Consensus 561 -----~I~iwDl~~---~~--~~~~l~~------~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~-----~~ 615 (707)
.|++||+.+ ++ ....+.. +...+..++|+|+|+.++..... ..|.+||+.++. ..
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 588899988 72 2334443 66779999999999977665433 369999998874 01
Q ss_pred eEEe--ecCCCCEE-----EEEEcCCCCEEE-EEe-CCCc--EEEEe
Q 005235 616 YRVL--KCHPKDIT-----NVAFHRSYPLFA-SCS-DDCT--AYVFH 651 (707)
Q Consensus 616 ~~~l--~~h~~~I~-----~vafspdg~lla-Sgs-~Dg~--I~Vwd 651 (707)
...+ ..|...|. .++|+|||+.|+ ..+ .+|. |++|+
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 1222 45665554 789999999776 665 4554 55553
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=1.2e-15 Score=164.33 Aligned_cols=290 Identities=10% Similarity=0.036 Sum_probs=173.1
Q ss_pred cCCCCcEE-EEEeCC--CcEEEEeCCCCeEEEEEecCCcEE-EEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-c
Q 005235 384 YPVACYLE-YKGSTD--GTVRIWEVESGRCLRVLEIGEAIQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-V 458 (707)
Q Consensus 384 fp~~~~~l-~sgs~D--gtVrIWd~~tg~~l~~l~~~~~V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-~ 458 (707)
|+.++..+ ++...+ ..|.+|++.+++..........+. ++.|+|+| ..|+.++.++.|.+|++.++....... .
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 34445554 444433 368888999888654433333333 47899999 467777888899999987764321100 0
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC--CCCccEEEEEECCCCceeeeee
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP--AGESRAIFMHQLSKKLSHRIPF 536 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~--dg~~~~V~Iwdl~~~~~~~~~~ 536 (707)
.......-.++.........+| ...+.|+|+|++++.+.. ......|.+||+.++... ...
T Consensus 122 ~~~~~~g~~l~~~~~~~~~~~~----------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~~~ 184 (396)
T 3c5m_A 122 EEWKGYGTWVANSDCTKLVGIE----------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-VIH 184 (396)
T ss_dssp TTEEEEEEEEECTTSSEEEEEE----------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-EEE
T ss_pred cccCCCCCEEEeccCCcccccc----------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-eec
Confidence 0000000000111111111111 012457888887766531 112348999999987764 334
Q ss_pred ccCCCeEEEEEeC-CCCEEEEEe-C------CeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCCCCEEEEEECC-----
Q 005235 537 KLHGLPVSSVFHP-TRSIFFVST-K------KNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPAGDNLIVGSRE----- 601 (707)
Q Consensus 537 ~~~~~V~~v~fsp-d~~~l~v~s-d------g~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spdg~~L~sGs~D----- 601 (707)
.+...+..+.|+| ++..|+.++ + ..|.+||+..++.. .+..+ ...+..++|+|+|+.|+.++.+
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 6677889999999 788766654 2 46899998766433 33333 2357889999999988877654
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEecccccCCCCCCcc
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCS----------------DDCTAYVFHGMVYSDLNQNPLI 664 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs----------------~Dg~I~Vwd~~~~~Dl~~~~~~ 664 (707)
+.|++||+.++ .... +.... ... ++|+| +|++|++++ .++.|++|+. .++..
T Consensus 264 ~~l~~~d~~~g-~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~------~~~~~- 332 (396)
T 3c5m_A 264 RVIYKANPETL-ENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT------KAKSA- 332 (396)
T ss_dssp EEEEEECTTTC-CEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET------TTTBC-
T ss_pred ceEEEEECCCC-CeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec------ccCce-
Confidence 44999999876 3322 22222 233 89999 999888765 3467999954 33322
Q ss_pred cceEEeeCCCCC-------CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 005235 665 VPLEILRGHTSS-------NGRGVMDCKFHPRQPWLFTAGA-DSVIRLYC 706 (707)
Q Consensus 665 ~pl~~l~gh~~~-------~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWd 706 (707)
..+..+... ....+..++|+|+|.+|+.++. ++...||.
T Consensus 333 ---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 333 ---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp ---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ---EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 234443321 0001566899999998877664 56666664
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=6.4e-15 Score=158.64 Aligned_cols=235 Identities=10% Similarity=0.080 Sum_probs=158.8
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEEec--CCcEEEEEEccCCCcc-EEEEE--------------eCCeEEEE
Q 005235 384 YPVACYLEYKGSTDGTVRIWEVE-SGRCLRVLEI--GEAIQYVAWNPLPELP-VLAVS--------------VGQDVLIL 445 (707)
Q Consensus 384 fp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l~~--~~~V~~v~~spdg~~~-lla~s--------------~d~~V~lw 445 (707)
|..++.++|+++.+ +|.+|++. +|++...... .+.+.+++|+|+|. . ++.++ .++.+.+|
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTR-AIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCE-EEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCC-EEEEEEecCCcceeccceeecCCceEEEE
Confidence 34455688888887 99999997 8887654443 24467799999993 3 33222 46677777
Q ss_pred ECCC-CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235 446 NTGL-GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524 (707)
Q Consensus 446 d~~~-~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw 524 (707)
++.. +... ..+..+ ...+...+.+++|+|+|++|+++... ...|.+|
T Consensus 125 ~~~~~g~~~---------------------~~~~~~---------~~~~~~~~~~~~~spdG~~l~~~~~~--~~~v~~~ 172 (365)
T 1jof_A 125 SVSETGKLE---------------------KNVQNY---------EYQENTGIHGMVFDPTETYLYSADLT--ANKLWTH 172 (365)
T ss_dssp EECTTCCEE---------------------EEEEEE---------ECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred ccCCCCcCc---------------------ceEeeE---------EeCCCCcceEEEECCCCCEEEEEcCC--CCEEEEE
Confidence 7642 2100 000000 01245678999999999998877642 2399999
Q ss_pred ECC-CCceee-eeec---cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCeEE---EEEeC---C----CC----
Q 005235 525 QLS-KKLSHR-IPFK---LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQRLI---KKLET---G----LK---- 581 (707)
Q Consensus 525 dl~-~~~~~~-~~~~---~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~~~---~~l~~---~----~~---- 581 (707)
++. ++.... ..+. +...+..++|+|+|++|++++ ++.|.+|++. ++++. ..+.. + ..
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence 998 565431 1222 356789999999999998877 5899999865 56543 22321 1 11
Q ss_pred --CeEEEE-EcCCCCEEEEEECCC------cEEEEECCCCCcceE---EeecCCCCEEEEEEcC---CCCEEEEEeCC-C
Q 005235 582 --EVSSIA-IHPAGDNLIVGSREG------KLCWFDMDLSSKPYR---VLKCHPKDITNVAFHR---SYPLFASCSDD-C 645 (707)
Q Consensus 582 --~I~sl~-~spdg~~L~sGs~Dg------~I~vwDl~~~~~~~~---~l~~h~~~I~~vafsp---dg~llaSgs~D-g 645 (707)
.+.+++ |+|+|++|++++.+. .|.+|+++...+... .+..+...+..++|+| +|++|++++.+ +
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence 588999 999999988776432 899999963224332 2334555677899999 89999988864 8
Q ss_pred cEEEEec
Q 005235 646 TAYVFHG 652 (707)
Q Consensus 646 ~I~Vwd~ 652 (707)
+|.||+.
T Consensus 333 ~v~v~~~ 339 (365)
T 1jof_A 333 WLEIYRW 339 (365)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 9999965
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=2.5e-15 Score=174.44 Aligned_cols=198 Identities=8% Similarity=-0.052 Sum_probs=137.8
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCC-------CCccEEEEEECCC------Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPA-------GESRAIFMHQLSK------KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~d-------g~~~~V~Iwdl~~------~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s 558 (707)
|...+.+++|+|+|++|++++.+ .....|.+|++.+ +... ... .+...+..++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence 56678899999999999998875 2235899999988 5443 333 4456778899999999998766
Q ss_pred -C--------CeEEEEECC-CC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcceEEeecCC
Q 005235 559 -K--------KNIRVYDLL-KQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREG--KLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 559 -d--------g~I~iwDl~-~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg--~I~vwDl~~~~~~~~~l~~h~ 623 (707)
+ ..|++||+. ++ +.......+...+.+++|+|+|+++++++.++ .|.+||+.++ ........+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecccccc
Confidence 4 379999998 56 44444444567899999999999888888888 5666666544 3333223222
Q ss_pred CC--------EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE-EEcCCCCEEE
Q 005235 624 KD--------ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC-KFHPRQPWLF 694 (707)
Q Consensus 624 ~~--------I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l-~fspdg~~L~ 694 (707)
.. +.+++|+|++.++++++. +.++||.+. +..+. +..+..|... +..+ +++++.-+++
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d----~~~~~----~~~l~~~~~~----~~~~~s~~~~~~~~~ 352 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD----PESGE----LVDAAGPWTE----WAATLTVSGTRAVGV 352 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE----TTTTE----EEECCSSCCE----EEEEEEEETTEEEEE
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE----CCCCc----EEEecCCCCe----EEEEEecCCCEEEEE
Confidence 22 567999999999999999 999999542 22221 4667777554 7666 5544333445
Q ss_pred EEeCCCcEEEE
Q 005235 695 TAGADSVIRLY 705 (707)
Q Consensus 695 s~g~Dg~IrlW 705 (707)
+++.+....||
T Consensus 353 ~~~~~~~~~i~ 363 (662)
T 3azo_A 353 AASPRTAYEVV 363 (662)
T ss_dssp EEETTEEEEEE
T ss_pred EcCCCCCCEEE
Confidence 55666555555
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=1.2e-14 Score=153.51 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=145.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCC-------cEEEEEEccCCCccEEEEEeC------------CeEEEEECCCC
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGE-------AIQYVAWNPLPELPVLAVSVG------------QDVLILNTGLG 450 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-------~V~~v~~spdg~~~lla~s~d------------~~V~lwd~~~~ 450 (707)
++++++.++.|.+||+.+++.+..+.... .+.+++|+|+|. .+++++.+ +.|.+||+.++
T Consensus 57 ~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 57 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCc
Confidence 55666788999999999999988887632 278999999994 56666644 77888876543
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL 530 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~ 530 (707)
... .......+...+.+++|+|+|+ +++++. .|.+||+.++.
T Consensus 136 ~~~--------------------------------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~-----~i~~~d~~~~~ 177 (349)
T 1jmx_B 136 LEA--------------------------------KPVRTFPMPRQVYLMRAADDGS-LYVAGP-----DIYKMDVKTGK 177 (349)
T ss_dssp GGB--------------------------------CCSEEEECCSSCCCEEECTTSC-EEEESS-----SEEEECTTTCC
T ss_pred ccc--------------------------------ceeeeccCCCcccceeECCCCc-EEEccC-----cEEEEeCCCCc
Confidence 110 0001223444688999999999 555432 59999998887
Q ss_pred eeeeeeccCC-------------------------CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEE-EEEeCCCCC
Q 005235 531 SHRIPFKLHG-------------------------LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLI-KKLETGLKE 582 (707)
Q Consensus 531 ~~~~~~~~~~-------------------------~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~-~~l~~~~~~ 582 (707)
.. ..+.... ...++++++++....... ...+..+|+.+++.. ..+..+...
T Consensus 178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
T 1jmx_B 178 YT-VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 256 (349)
T ss_dssp EE-EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred ee-ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence 65 4442111 334566666543221111 112223555554321 122334567
Q ss_pred eEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 583 VSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 583 I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+.+++|+| +|++|+++ ++.|.+||+.++ +.+..+.. ...+.+++|+|++.+|++++.++.|.+||.
T Consensus 257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEec
Confidence 89999999 99999988 889999999876 66666653 345779999999998888888999999954
No 167
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1e-14 Score=154.82 Aligned_cols=239 Identities=10% Similarity=0.127 Sum_probs=162.2
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---Ce--EEEEECCCCCchhcccccceeeeccccccc
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QD--VLILNTGLGNEEEQRRVKDLLHVETPTAPD 471 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~--V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~ 471 (707)
++.|.+|++.+++... + ..+.+++|+|||. .|+.++.+ +. |.+|++.++
T Consensus 42 ~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g--------------------- 95 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I---ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETL--------------------- 95 (347)
T ss_dssp EEEEEEEETTTCCEEE-E---ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTT---------------------
T ss_pred cceEEEEeCCCCceEE-c---ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCC---------------------
Confidence 6789999999887543 3 5688999999994 45555543 33 555554432
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC------------------C------CccEEEEEECC
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA------------------G------ESRAIFMHQLS 527 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d------------------g------~~~~V~Iwdl~ 527 (707)
....+..+.. +.+++|+|+|++|++++.+ | ....|.+|++.
T Consensus 96 --------------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 96 --------------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp --------------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred --------------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 2222223334 8999999999999988743 1 13589999998
Q ss_pred CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-C------C-eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235 528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-K------K-NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-d------g-~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG 598 (707)
++... ..+ . . .+..++|+|++ +++++. + . ...||.+.+++. ..+..+ ..+.++ +|+|+.|+.+
T Consensus 161 ~~~~~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVI-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEE-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred CCeEE-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEE
Confidence 88763 344 4 3 88899999999 777775 3 2 334444435554 344444 555554 9999999887
Q ss_pred ECC--------CcEEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235 599 SRE--------GKLCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669 (707)
Q Consensus 599 s~D--------g~I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~ 669 (707)
+.+ ..|.+|| ++ ........|...+.. ++|+ ++ ++++++.++.++|| +. . +. ...
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~-----g~----~~~ 296 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D-----GE----IKP 296 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S-----SS----EEE
T ss_pred EccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C-----Cc----eEE
Confidence 754 3678888 33 444444556778886 9999 88 99999999999999 74 1 11 233
Q ss_pred eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE-EEEe
Q 005235 670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI-RLYC 706 (707)
Q Consensus 670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I-rlWd 706 (707)
+..+... |.+++|+| .++++++.++.. .||.
T Consensus 297 ~~~~~~~----v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 297 IAKGRHW----IMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp EECSSSE----EEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred EecCCCe----EEeeeeeC--cEEEEEcCCCChHHheE
Confidence 3344444 99999999 688888877765 7774
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=2.6e-15 Score=177.31 Aligned_cols=238 Identities=10% Similarity=0.041 Sum_probs=163.3
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC----
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF---- 494 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~---- 494 (707)
...+++|+|+| .+++.+ +++|.+|++.++.... .+.+|.
T Consensus 18 ~~~~~~w~~dg--~~~~~~-~~~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 60 (740)
T 4a5s_A 18 KLYSLRWISDH--EYLYKQ-ENNILVFNAEYGNSSV----------------------------------FLENSTFDEF 60 (740)
T ss_dssp CCCCEEECSSS--EEEEEE-TTEEEEEETTTCCEEE----------------------------------EECTTTTTTC
T ss_pred cccccEECCCC--cEEEEc-CCcEEEEECCCCceEE----------------------------------EEechhhhhh
Confidence 45689999999 455555 9999999988764311 111222
Q ss_pred -CCeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEE
Q 005235 495 -KMVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYD 566 (707)
Q Consensus 495 -~~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwD 566 (707)
.....++|||+|++|++++.+.. .+.+.+||+.++... .+ .+.+.+..++|||||+.|+.+.++.|++||
T Consensus 61 ~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~ 138 (740)
T 4a5s_A 61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKI 138 (740)
T ss_dssp CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--CSSCCCTTEEEEEECSSTTCEEEEETTEEEEES
T ss_pred cccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--EcccCCCcceeeEECCCCCEEEEEECCeEEEEE
Confidence 22345899999999999886531 137789999998764 45 677889999999999999999999999999
Q ss_pred CCCCeEEEEEe-CCCCCe-----------------EEEEEcCCCCEEEEEECCC--------------------------
Q 005235 567 LLKQRLIKKLE-TGLKEV-----------------SSIAIHPAGDNLIVGSREG-------------------------- 602 (707)
Q Consensus 567 l~~~~~~~~l~-~~~~~I-----------------~sl~~spdg~~L~sGs~Dg-------------------------- 602 (707)
+.++...+... ++...+ .++.|||||+.||.++.|.
T Consensus 139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 98876543211 222222 3489999999999886432
Q ss_pred ----------cEEEEECCC---CCc-ceEEee------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecccccCC
Q 005235 603 ----------KLCWFDMDL---SSK-PYRVLK------CHPKDITNVAFHRSYPLFASCSD----DCTAYVFHGMVYSDL 658 (707)
Q Consensus 603 ----------~I~vwDl~~---~~~-~~~~l~------~h~~~I~~vafspdg~llaSgs~----Dg~I~Vwd~~~~~Dl 658 (707)
.|.+||+.+ +.. ....+. +|...+..++|+|+|++++.... +..|.+|++.
T Consensus 219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~----- 293 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD----- 293 (740)
T ss_dssp CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE-----
T ss_pred CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC-----
Confidence 478899987 521 233343 37778999999999997665543 3378999653
Q ss_pred CCCC----cccceEEe--eCCCCCCCCCee-----EEEEcCCCCEEE-EEe-CCC--cEEEEe
Q 005235 659 NQNP----LIVPLEIL--RGHTSSNGRGVM-----DCKFHPRQPWLF-TAG-ADS--VIRLYC 706 (707)
Q Consensus 659 ~~~~----~~~pl~~l--~gh~~~~~~gV~-----~l~fspdg~~L~-s~g-~Dg--~IrlWd 706 (707)
++. +.. +..+ .+|... |. .++|+|||++|+ ..+ .+| .|.+|+
T Consensus 294 -tg~~~~~~~~-~~~l~~~~~~~~----v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 294 -ESSGRWNCLV-ARQHIEMSTTGW----VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp -TTTTEEEECG-GGCEEEECSSSC----SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred -CCccccceeE-EEEeeeccCCce----EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 332 110 1122 445543 43 789999999887 665 344 466665
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2.7e-13 Score=139.96 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=166.5
Q ss_pred CcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 418 EAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
..+.+|++++++ .++++ ..++.|.+|++... . +..+.... ....+...
T Consensus 30 ~~p~~v~~~~~g--~l~v~~~~~~~i~~~d~~g~-~------------------------~~~~~~~~----~~~~~~~~ 78 (286)
T 1q7f_A 30 TEPSGVAVNAQN--DIIVADTNNHRIQIFDKEGR-F------------------------KFQFGECG----KRDSQLLY 78 (286)
T ss_dssp SCEEEEEECTTC--CEEEEEGGGTEEEEECTTSC-E------------------------EEEECCBS----SSTTCBSS
T ss_pred CCCceEEECCCC--CEEEEECCCCEEEEECCCCc-E------------------------EEEecccC----CCcccccC
Confidence 468899999998 35555 56788999986521 1 11111000 00134457
Q ss_pred eEEEEE-cCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235 497 VSSVEW-HRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR 571 (707)
Q Consensus 497 V~~v~~-sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~ 571 (707)
+..+++ .++|..+++... ++ .|.+|+. .+... ..+ .....+.+++++|++.++++.. ++.|.+||.. ++
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~---~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTH---QIQIYNQ-YGQFV-RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGC---EEEEECT-TSCEE-EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ceEEEEEcCCCeEEEEcCCCCC---EEEEECC-CCcEE-EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 889999 467766666533 45 8999994 44444 455 3446789999999998776665 7899999964 56
Q ss_pred EEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCC-c
Q 005235 572 LIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDC-T 646 (707)
Q Consensus 572 ~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg-~ 646 (707)
.+..+. .+...+.+|+++|+|.++++.+.++.|.+||.. + ..+..+..+ ...+.+++++++|.++++...++ .
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-C-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 666664 344568999999999988888889999999985 3 455566443 36789999999999999988886 9
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
|.+|+. . +.. +..+..+... ..+.+++|+|+|.++++ +.|++|++|++
T Consensus 231 i~~~~~------~-g~~---~~~~~~~~~~--~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 231 LTIFTQ------D-GQL---ISALESKVKH--AQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEECT------T-SCE---EEEEEESSCC--SCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEECC------C-CCE---EEEEcccCCC--CcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 999942 2 222 4445444321 12789999999987776 67999999974
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=6.2e-14 Score=148.78 Aligned_cols=258 Identities=12% Similarity=0.128 Sum_probs=174.3
Q ss_pred CCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe--cc
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL--RH 493 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~--~h 493 (707)
-+.|.+|+++|+| .++++...+ .+.++....... .... ......++.|.+|+..++...... .+
T Consensus 23 l~~v~~va~d~~G--~l~v~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 89 (329)
T 3fvz_A 23 PGQVSGVALDSKN--NLVIFHRGDHVWDGNSFDSKFV-YQQR----------GLGPIEEDTILVIDPNNAEILQSSGKNL 89 (329)
T ss_dssp CSCEEEEEECTTC--CEEEEECTTCCCCTTSBCTTSC-BSCG----------GGCSCCSCCEEEECTTTCCEEEEECTTT
T ss_pred cCCceEEEECCCC--CEEEEeCCCCeEEeeccCccee-eccc----------ccccccCCcEEEEECCCCeEEeccCCCc
Confidence 3678999999999 466555443 322221111100 0000 001113567888887655443322 34
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc-eeeeeec----------cCCCeEEEEEeC-CCCEEEEEe--C
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL-SHRIPFK----------LHGLPVSSVFHP-TRSIFFVST--K 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~~----------~~~~V~~v~fsp-d~~~l~v~s--d 559 (707)
...+..|+++++|+.+++...++ .|.+|+..... .. ..+. +...+..++|+| ++.++++.+ +
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~---~v~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALH---QVFKLDPHSKEGPL-LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTT---EEEEECTTCSSCCS-EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred cCCceEEEECCCCCEEEEECCCC---EEEEEeCCCCeEEE-EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 45789999999999888777666 99999987653 22 3331 122688999999 788888774 7
Q ss_pred CeEEEEECCCCeEEEEEeCC----------CCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCE
Q 005235 560 KNIRVYDLLKQRLIKKLETG----------LKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDI 626 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~l~~~----------~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I 626 (707)
+.|++|| .++..+..+... .....+|+++|+ |.++++...+++|.+||..++ +.+..+. .+...+
T Consensus 166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNV 243 (329)
T ss_dssp CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCE
T ss_pred CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCc
Confidence 8999999 567777666422 134899999998 777777778899999999866 6666663 456778
Q ss_pred EEEEEcCCCCEEEEE-------eCCCcEEEEecccccCCCCCCcccceEEe---eCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 627 TNVAFHRSYPLFASC-------SDDCTAYVFHGMVYSDLNQNPLIVPLEIL---RGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 627 ~~vafspdg~llaSg-------s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l---~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
.+++|+| +.++++. +.+.+|++|+. .++.. +..+ .++... +.+|+++|+|.++++.
T Consensus 244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~------~~g~~---~~~~~~~~~~~~~----p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNF------SSGEI---IDVFKPVRKHFDM----PHDIVASEDGTVYIGD 309 (329)
T ss_dssp EEEEEET-TEEEEEECCCCTTCSCCCCEEEEET------TTCCE---EEEECCSSSCCSS----EEEEEECTTSEEEEEE
T ss_pred ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEc------CCCeE---EEEEcCCCCccCC----eeEEEECCCCCEEEEE
Confidence 9999999 4444433 34458999953 34433 4444 344444 8999999999888888
Q ss_pred eCCCcEEEEeC
Q 005235 697 GADSVIRLYCH 707 (707)
Q Consensus 697 g~Dg~IrlWdl 707 (707)
..+++|++|++
T Consensus 310 ~~~~~I~~~~~ 320 (329)
T 3fvz_A 310 AHTNTVWKFTL 320 (329)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCCEEEEEeC
Confidence 89999999974
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=2.4e-13 Score=146.52 Aligned_cols=275 Identities=11% Similarity=0.038 Sum_probs=180.6
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCch--hccc------
Q 005235 396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEE--EQRR------ 457 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~--~~~~------ 457 (707)
.|++|.+||..+++.+..+...... .++|+|++. .++++. .++.|.+||+.+.... +...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999998888775444 999999994 566665 2567999998876432 1100
Q ss_pred ccceeeeccc-----ccccC--CCCcEEEEecCCccceEE-eccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCC
Q 005235 458 VKDLLHVETP-----TAPDD--NMASIVSWLQHDKLDGIR-LRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSK 528 (707)
Q Consensus 458 ~~~v~~~~~~-----~~~~~--~d~~i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~ 528 (707)
......+.++ ++++. .++.|.+|+......... +.+.+ ...+.+.|++ ..+++.+.|| .+.++++..
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg---~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDG---GLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTS---SEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCC---cEEEEEECC
Confidence 0112222332 33332 367899999987755444 44332 2335667765 6778888888 888888765
Q ss_pred Cceee------eeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCC------CC----eEEEEEc
Q 005235 529 KLSHR------IPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGL------KE----VSSIAIH 589 (707)
Q Consensus 529 ~~~~~------~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~------~~----I~sl~~s 589 (707)
..... ..+........+.++|++..++..+ ++.|.++|+.... .+..+.... .+ ...++|+
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 22220 0121112222344567777777666 8999999997543 333322110 11 1137899
Q ss_pred CCCCEEEEEEC-----------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235 590 PAGDNLIVGSR-----------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL 658 (707)
Q Consensus 590 pdg~~L~sGs~-----------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl 658 (707)
|++..++++.. .+.|.+||+.+. +.+.++..+. +.+++|+|+|++|++++. ++|.||| .
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D------~ 332 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD------I 332 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE------C
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE------C
Confidence 99988877653 347999999987 7888888776 899999999999998887 9999995 4
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~ 691 (707)
.++.+ ..+..+..+... ...++|+|+|.
T Consensus 333 ~t~~l-~~~~~i~~~G~~----P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEP-KLLRTIEGAAEA----SLQVQFHPVGG 360 (361)
T ss_dssp SSSSC-EEEEEETTSCSS----EEEEEECCCSC
T ss_pred CCCcc-eeeEEeccCCCC----cEEEEecCCCC
Confidence 44411 135665555443 88999999986
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=2.2e-14 Score=154.41 Aligned_cols=257 Identities=9% Similarity=-0.035 Sum_probs=167.0
Q ss_pred EEEeCCCCeEEEEEec-CCcEEE-----EEEccCCCccEEEEEe-CC--eEEEEECCCCCchhcccccceeeeccccccc
Q 005235 401 RIWEVESGRCLRVLEI-GEAIQY-----VAWNPLPELPVLAVSV-GQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPD 471 (707)
Q Consensus 401 rIWd~~tg~~l~~l~~-~~~V~~-----v~~spdg~~~lla~s~-d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~ 471 (707)
..++..+|..+..+.. ...+.. ++|+|||. .|+.++. ++ .|.+|++.++...
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~------------------ 73 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVAT------------------ 73 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEE------------------
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceE------------------
Confidence 3457778888877766 334555 88999994 5666665 55 3666776554211
Q ss_pred CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE--EEe
Q 005235 472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS--VFH 548 (707)
Q Consensus 472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v--~fs 548 (707)
.....+...+..++|+|+|++|++++.++ .|.+||+.++... ..+ .+.+.+... .++
T Consensus 74 ----------------~lt~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~ 133 (388)
T 3pe7_A 74 ----------------QLTEGRGDNTFGGFLSPDDDALFYVKDGR---NLMRVDLATLEEN-VVYQVPAEWVGYGTWVAN 133 (388)
T ss_dssp ----------------ECCCSSCBCSSSCEECTTSSEEEEEETTT---EEEEEETTTCCEE-EEEECCTTEEEEEEEEEC
T ss_pred ----------------EeeeCCCCCccceEEcCCCCEEEEEeCCC---eEEEEECCCCcce-eeeechhhcccccceeEC
Confidence 01223444455678999999999999876 9999999998775 444 444444333 358
Q ss_pred CCCCEEEEEe-----------------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECC---
Q 005235 549 PTRSIFFVST-----------------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSRE--- 601 (707)
Q Consensus 549 pd~~~l~v~s-----------------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~D--- 601 (707)
|++.+++... +..|.+||+.+++.. .+..+...+..++|+| +|..|+..+.+
T Consensus 134 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (388)
T 3pe7_A 134 SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHD 212 (388)
T ss_dssp TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCC
Confidence 9999887421 368999999988654 4444557799999999 99999887764
Q ss_pred ---CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeC-CC----cEEEEecccccCCCCCCcccceEEee
Q 005235 602 ---GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSD-DC----TAYVFHGMVYSDLNQNPLIVPLEILR 671 (707)
Q Consensus 602 ---g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~-Dg----~I~Vwd~~~~~Dl~~~~~~~pl~~l~ 671 (707)
..|.++|+..+ ....+..+. ..+..++|+|+|+.|+..+. ++ .|++| |+.++.. ..+..+.
T Consensus 213 ~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~------d~~~g~~-~~l~~~~ 283 (388)
T 3pe7_A 213 LVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA------DPETLEN-RQLTSMP 283 (388)
T ss_dssp TSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE------CTTTCCE-EEEEEEC
T ss_pred CCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE------ecCCCce-EEEEcCC
Confidence 37888887644 344555454 35888999999997765443 22 39999 4444432 1233343
Q ss_pred CCCCCCCCCeeEEEEcCCCCEEEEE---------eCCCcEEEEeC
Q 005235 672 GHTSSNGRGVMDCKFHPRQPWLFTA---------GADSVIRLYCH 707 (707)
Q Consensus 672 gh~~~~~~gV~~l~fspdg~~L~s~---------g~Dg~IrlWdl 707 (707)
++... ......++|+|+|++|+.. +.+..|.+|++
T Consensus 284 ~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 284 ACSHL-MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp CEEEE-EECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred Cceee-eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 31100 0001123799999988754 45668999985
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=4.5e-13 Score=141.41 Aligned_cols=258 Identities=9% Similarity=0.061 Sum_probs=171.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEE-EEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLA-VSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla-~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.++..+.++.+++| .+.....+.. ...+.+++|+|++ .|++ ...++.|.+|++.++..
T Consensus 19 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g--~l~~~~~~~~~i~~~d~~~~~~--------------- 78 (333)
T 2dg1_A 19 SAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG--QLFLLDVFEGNIFKINPETKEI--------------- 78 (333)
T ss_dssp CSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS--CEEEEETTTCEEEEECTTTCCE---------------
T ss_pred ceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC--CEEEEECCCCEEEEEeCCCCcE---------------
Confidence 33444668888999 4566666655 5678999999999 3554 45677899888765421
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee---ccCCCeE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF---KLHGLPV 543 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~---~~~~~V~ 543 (707)
..+ ...+...+.+++|+++|+++++...++ ..+.|.+|+..++... ..+ .....+.
T Consensus 79 ----------~~~---------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 79 ----------KRP---------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCID 138 (333)
T ss_dssp ----------EEE---------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEE
T ss_pred ----------EEE---------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCccc
Confidence 111 113457799999999999888776550 0128999999877654 233 2345789
Q ss_pred EEEEeCCCCEEEEEeC-------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc
Q 005235 544 SSVFHPTRSIFFVSTK-------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP 615 (707)
Q Consensus 544 ~v~fspd~~~l~v~sd-------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~ 615 (707)
+++++|++.++++... +.|..||..+++... +..+...+.+++|+|+|+.|+++ +.++.|.+||+......
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 9999999988776653 567777766555433 32333458899999999866554 56789999999643232
Q ss_pred eEE--------eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC--CCCCeeEEE
Q 005235 616 YRV--------LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS--NGRGVMDCK 685 (707)
Q Consensus 616 ~~~--------l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~--~~~gV~~l~ 685 (707)
+.. +.++ ..+..++++++|.++++...++.|.+|+ .. +.. +..+..+... ....+.+++
T Consensus 218 ~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d------~~-g~~---~~~~~~~~~~~g~~~~~~~~~ 286 (333)
T 2dg1_A 218 IQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN------KR-GYP---IGQILIPGRDEGHMLRSTHPQ 286 (333)
T ss_dssp EEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC------TT-SCE---EEEEECTTGGGTCSCBCCEEE
T ss_pred cccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC------CC-CCE---EEEEEcCCCccccccCcceEE
Confidence 221 1122 4678899999999988888889999994 32 222 3444433210 000288999
Q ss_pred EcCCCCEEEEEeCC
Q 005235 686 FHPRQPWLFTAGAD 699 (707)
Q Consensus 686 fspdg~~L~s~g~D 699 (707)
|+|++..|+.++.+
T Consensus 287 ~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 287 FIPGTNQLIICSND 300 (333)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCc
Confidence 99998877666555
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=6.5e-13 Score=137.10 Aligned_cols=219 Identities=15% Similarity=0.203 Sum_probs=159.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-------CCcEEEEEE-ccCCCccEEEEEe--CCeEEEEECCCCCchhccc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-------GEAIQYVAW-NPLPELPVLAVSV--GQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-------~~~V~~v~~-spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~ 457 (707)
+.++++.+.++.|.+|+.. ++.+..+.. ...+.++++ .+++ .++++.. ++.|.+|+.. +..
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~d~~-g~~----- 111 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIYNQY-GQF----- 111 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEECTT-SCE-----
T ss_pred CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEEECCC-CcE-----
Confidence 3577787889999999976 777776653 246899999 5777 5666663 7888888832 211
Q ss_pred ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235 458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF- 536 (707)
Q Consensus 458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~- 536 (707)
+..+ ...+...+.+++++++|+.+++...++ .|.+|+.... .. ..+
T Consensus 112 -------------------~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~g~-~~-~~~~ 158 (286)
T 1q7f_A 112 -------------------VRKF---------GATILQHPRGVTVDNKGRIIVVECKVM---RVIIFDQNGN-VL-HKFG 158 (286)
T ss_dssp -------------------EEEE---------CTTTCSCEEEEEECTTSCEEEEETTTT---EEEEECTTSC-EE-EEEE
T ss_pred -------------------EEEe---------cCccCCCceEEEEeCCCCEEEEECCCC---EEEEEcCCCC-EE-EEeC
Confidence 0111 012345688999999999877776666 9999997543 33 444
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCCCCEEEEEECCC-cEEEEECC
Q 005235 537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPAGDNLIVGSREG-KLCWFDMD 610 (707)
Q Consensus 537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spdg~~L~sGs~Dg-~I~vwDl~ 610 (707)
.....+.+++++|++.++++.. ++.|++||.. ++.+..+... ...+.+|+++|+|.++++...++ .|.+||..
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 2345689999999998666665 7999999974 5566666543 35789999999999888888776 99999964
Q ss_pred CCCcceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 611 LSSKPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 611 ~~~~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+ ..+..+..+.. .+.+++++|+|.++++ +.|++|+||+.
T Consensus 238 -g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 238 -G-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp -S-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred -C-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 3 55666665543 4789999999998877 57899999964
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=5.5e-13 Score=141.44 Aligned_cols=224 Identities=10% Similarity=0.063 Sum_probs=157.2
Q ss_pred CCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235 397 DGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN 473 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~ 473 (707)
+++|.+||..+|+.+..+.. -..+.+|+++|+|. ++++. .++.|++|+.......+
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~~~~------------------- 126 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKEGPL------------------- 126 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSSCCS-------------------
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCeEEE-------------------
Confidence 46899999999998877654 35789999999993 55444 56789999864321000
Q ss_pred CCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEe-CCCCccEEEEEECCCCceeeeee-ccC----------C
Q 005235 474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPF-KLH----------G 540 (707)
Q Consensus 474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~-~~~----------~ 540 (707)
..+... ........+...+..|+++| +|..+++.+ .++ .|.+|+. .+... ..+ ... .
T Consensus 127 ----~~~~~~-~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~---~I~~~~~-~g~~~-~~~~~~g~~~~~~~~~~~ 196 (329)
T 3fvz_A 127 ----LILGRS-MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS---RIVQFSP-SGKFV-TQWGEESSGSSPRPGQFS 196 (329)
T ss_dssp ----EEESBT-TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC---EEEEECT-TSCEE-EEECEECCSSSCCTTEES
T ss_pred ----EEeccc-CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC---eEEEEcC-CCCEE-EEeccCCCCCCCCCcccC
Confidence 000000 00000013445788999999 788888775 456 9999994 44444 445 211 2
Q ss_pred CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcC------CCCEEEEEECCCcEEEEECC
Q 005235 541 LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHP------AGDNLIVGSREGKLCWFDMD 610 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~sp------dg~~L~sGs~Dg~I~vwDl~ 610 (707)
.+..++|+|++..|+++. ++.|++||+.+++.+..+.. +...+.+++++| +|..+++.+.+.+|++||+.
T Consensus 197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 388999999955555554 78999999998998888853 445688999999 33322333345589999998
Q ss_pred CCCcceEEe---ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 611 LSSKPYRVL---KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 611 ~~~~~~~~l---~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
++ +.+..+ .++.....+|+++|+|.++++.+.++.|++|+.
T Consensus 277 ~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 277 SG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 77 667776 366778999999999999999999999999964
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=7.7e-12 Score=142.66 Aligned_cols=311 Identities=10% Similarity=0.039 Sum_probs=204.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECC--CCCch--hc-ccccceee
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTG--LGNEE--EQ-RRVKDLLH 463 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~--~~~~~--~~-~~~~~v~~ 463 (707)
.++++...+++|.++|..+++.+.++.....+.+++|+||| ..+++++.++.|.+||+. +.... +. +....-+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia 246 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 246 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeE
Confidence 46677788999999999999999999988888999999999 478888889999999995 44321 11 01001111
Q ss_pred ec--------ccccccCCCCcEEEEecCCccceEEec-----------cCC-CeEEEEEcCCCCEEEEEeCCCCccEEEE
Q 005235 464 VE--------TPTAPDDNMASIVSWLQHDKLDGIRLR-----------HFK-MVSSVEWHRRGDYLSTVMPAGESRAIFM 523 (707)
Q Consensus 464 ~~--------~~~~~~~~d~~i~iW~~~~~~~~~~~~-----------h~~-~V~~v~~sp~g~~lat~s~dg~~~~V~I 523 (707)
.. +.+++....+++.++|..+......+. |.. .+..+..++++..++....+ .+.|.+
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~--~g~v~~ 324 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKILL 324 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC--CCeEEE
Confidence 11 012334456788888876654432211 112 67888889887766555443 249999
Q ss_pred EECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC-CCCCe--EEEE-EcCCCCEE-
Q 005235 524 HQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET-GLKEV--SSIA-IHPAGDNL- 595 (707)
Q Consensus 524 wdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~-~~~~I--~sl~-~spdg~~L- 595 (707)
.|........ ..+........+.|+|++++|+++. ++.|.++|+.+++++..+.. +..+- .... ++|++..+
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~ 404 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 404 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence 9988764331 2224555677899999999999887 69999999999998887765 32110 1222 68885555
Q ss_pred EEEE-CCCcEEEEECCCC------CcceEEeecCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEecccccCCCCC
Q 005235 596 IVGS-REGKLCWFDMDLS------SKPYRVLKCHPKDITNVAFHRSYPLFASCSD-------DCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 596 ~sGs-~Dg~I~vwDl~~~------~~~~~~l~~h~~~I~~vafspdg~llaSgs~-------Dg~I~Vwd~~~~~Dl~~~ 661 (707)
+++. .++.|.++|.++. -+.++++......-..+.+||++++|.+... .++|.|||+.... + ++
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~-~g 482 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT-G-DG 482 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC-C-SS
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc-c-cc
Confidence 4443 4689999999872 1566777755443345789999998887663 4599999776330 0 00
Q ss_pred CcccceEEee-----CCCCCCCCCeeEEEEcCCCCEEEEEe-----CCCcEEEEe
Q 005235 662 PLIVPLEILR-----GHTSSNGRGVMDCKFHPRQPWLFTAG-----ADSVIRLYC 706 (707)
Q Consensus 662 ~~~~pl~~l~-----gh~~~~~~gV~~l~fspdg~~L~s~g-----~Dg~IrlWd 706 (707)
. ..++..+. +-. ..+..+..+.|+|+|.+|..+. .++.|.|+|
T Consensus 483 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 483 S-DPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp S-CCCEEEECHHHHHTCC-SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred c-CCCcEEeccccccccC-CCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 0 01122332 100 0112389999999999875552 378898887
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.58 E-value=4.5e-14 Score=163.88 Aligned_cols=230 Identities=10% Similarity=-0.030 Sum_probs=150.4
Q ss_pred EEEEEeCCCcEEEEeCC--C-CeEEEEEec------CCcEEEEEEccCCCccEEEEEeC----------CeEEEEECCCC
Q 005235 390 LEYKGSTDGTVRIWEVE--S-GRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVG----------QDVLILNTGLG 450 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~--t-g~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d----------~~V~lwd~~~~ 450 (707)
++++...+..|.+|++. + +.. ..+.. ...+.+++|+|||. .|++++.+ ..|.+|++.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44454456778888876 3 443 33333 35688999999994 56666655 35666665431
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC-----CccEEEEE
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG-----ESRAIFMH 524 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg-----~~~~V~Iw 524 (707)
... + .+....+. .+...+..++|||+|++|++++.+. ....|.+|
T Consensus 172 ~~~--------------------~---------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 172 AAA--------------------D---------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp TTT--------------------C---------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred ccc--------------------c---------CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 000 0 02222333 4456778899999999999888654 23589999
Q ss_pred ECC-CCc--eeeeee--ccCCCeEEEEEeCCCCEEEEEe-CC--eEEEEECCCCeEEEEEeCCCCC--------eEEEEE
Q 005235 525 QLS-KKL--SHRIPF--KLHGLPVSSVFHPTRSIFFVST-KK--NIRVYDLLKQRLIKKLETGLKE--------VSSIAI 588 (707)
Q Consensus 525 dl~-~~~--~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg--~I~iwDl~~~~~~~~l~~~~~~--------I~sl~~ 588 (707)
++. ++. .. ..+ .+...+..++|+|+|++++++. ++ .|.+||+.+++....+..+... +.+++|
T Consensus 223 d~~~~g~~~~~-~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 223 RVTEDGRFADT-RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EECTTSCEEEE-EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred EECCCCccccc-EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence 998 452 22 334 4568899999999999777666 56 6777887677654333322221 567899
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEec
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNV-AFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v-afspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+|++.++++++. +.+.||.++......+.+..|...+..+ +++.+.-++++++.+....||.+
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 999999999998 9999995543323477888888888877 55544445566667765566643
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=8.2e-13 Score=137.33 Aligned_cols=229 Identities=8% Similarity=0.036 Sum_probs=161.5
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.....+++|+|+++..+++...++.|..|++.++ +. .+..+...
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------------------------~~----------~~~~~~~~ 70 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------------------------LS----------PEMHPSHH 70 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------------------EE----------EEESSCSS
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------------------eE----------EEECCCCC
Confidence 4567899999999423555556788988886543 11 12245567
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c----cCCCeEEEEEeCCCCEEEEE----e---------
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K----LHGLPVSSVFHPTRSIFFVS----T--------- 558 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~----~~~~V~~v~fspd~~~l~v~----s--------- 558 (707)
+.+++++++|.++++...++ .|.+|+..++... ..+ . ....+..++++|+|.++++. +
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~---~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLR---RLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp EEEEEECTTCCEEEEETTTT---EEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred cceeeECCCCcEEEEecCCC---eEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 89999999999887776555 8999999777654 222 1 12356789999999988863 2
Q ss_pred -----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEEE
Q 005235 559 -----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNVA 630 (707)
Q Consensus 559 -----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~va 630 (707)
.+.|..++.. ++. ..+..+......++|+|+|+.|++.+.++.|.+||+...... ...+..+...+.+++
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 2456666655 443 345556677899999999999977778899999999732233 233334455677899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE-cCCCCEEEEEeCCCcEEE
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF-HPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f-spdg~~L~s~g~Dg~Irl 704 (707)
++++|.++++. ++.|.+|+ .. +. .+..+..+.. +.+++| +|++..|+.++.++.+++
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~------~~-g~---~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLT------PD-GD---ELGRVLTPQT-----TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEEC------TT-SC---EEEEEECSSC-----CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred ECCCCCEEEEc--CCeEEEEC------CC-CC---EEEEEECCCC-----ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 99999977766 78899994 32 22 2555665543 788999 689999999988765543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=1.1e-12 Score=153.95 Aligned_cols=241 Identities=14% Similarity=0.076 Sum_probs=165.4
Q ss_pred cEEEEEEccCCCccEEEEEe-CC----eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235 419 AIQYVAWNPLPELPVLAVSV-GQ----DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH 493 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~-d~----~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h 493 (707)
.+.+++|||||. .|+.+.. +| .|++||+.++... .....
T Consensus 126 ~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~-----------------------------------~~~~~ 169 (710)
T 2xdw_A 126 ALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKEL-----------------------------------PDVLE 169 (710)
T ss_dssp EEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEE-----------------------------------EEEEE
T ss_pred EEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCC-----------------------------------ccccc
Confidence 588999999994 4444433 33 6888887665221 11111
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCC-------------ccEEEEEECCCCceee-eee---ccCCCeEEEEEeCCCCEEEE
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGE-------------SRAIFMHQLSKKLSHR-IPF---KLHGLPVSSVFHPTRSIFFV 556 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~-------------~~~V~Iwdl~~~~~~~-~~~---~~~~~V~~v~fspd~~~l~v 556 (707)
...+..++|+|+|+.|+.++.++. ...|.+|++.++.... ..+ .+...+..+.|+|+|++|+.
T Consensus 170 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 170 RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 123678999999999999988763 3359999998876421 222 23456789999999999887
Q ss_pred Ee------CCeEEEEECCC------Ce-EEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCc-ceEE
Q 005235 557 ST------KKNIRVYDLLK------QR-LIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSK-PYRV 618 (707)
Q Consensus 557 ~s------dg~I~iwDl~~------~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~-~~~~ 618 (707)
++ +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ..+.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 64 35899999986 43 35566666666655 488999988877654 3599999986631 3456
Q ss_pred eecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 619 LKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 619 l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
+..|.. .+.+++|++++.+++++..|+..+||-. ++.++. .+..+..+... |..++++|++..|+..
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~----~~~~g~---~~~~l~~~~~~----v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH----DLATGA---LLKIFPLEVGS----VVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE----ETTTCC---EEEEECCCSSE----EEEEECCTTCSEEEEE
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE----ECCCCC---EEEecCCCCce----EEEEecCCCCCEEEEE
Confidence 666654 6888999988889999999996655532 332232 24566666554 8899999999866533
Q ss_pred -e---CCCcEEEEeC
Q 005235 697 -G---ADSVIRLYCH 707 (707)
Q Consensus 697 -g---~Dg~IrlWdl 707 (707)
+ ..++|.+||+
T Consensus 398 ~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDL 412 (710)
T ss_dssp EECSSCCCEEEEEET
T ss_pred EeCCCCCCEEEEEEC
Confidence 3 3478888874
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=5.1e-14 Score=151.55 Aligned_cols=247 Identities=9% Similarity=-0.057 Sum_probs=161.0
Q ss_pred EEeCCCCeEEEEEecC-C-----cEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccC
Q 005235 402 IWEVESGRCLRVLEIG-E-----AIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD 472 (707)
Q Consensus 402 IWd~~tg~~l~~l~~~-~-----~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~ 472 (707)
..|..+|..+..+... . .+.+++|+|+|. .|+.++.. ..|.+|++.++.
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~--------------------- 71 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQ--------------------- 71 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTE---------------------
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCc---------------------
Confidence 4577888877777552 2 267889999994 44444432 256666765432
Q ss_pred CCCcEEEEecCCccceEEeccCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE------
Q 005235 473 NMASIVSWLQHDKLDGIRLRHFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS------ 544 (707)
Q Consensus 473 ~d~~i~iW~~~~~~~~~~~~h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~------ 544 (707)
...+..+... ...+.|+|+|++|++++.++ .|.+|++.++... ..+ .+.+....
T Consensus 72 --------------~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~~~~~-~~~~~~~~~~~~g~~l~~ 133 (396)
T 3c5m_A 72 --------------AVQLTEGKGDNTFGGFISTDERAFFYVKNEL---NLMKVDLETLEEQ-VIYTVDEEWKGYGTWVAN 133 (396)
T ss_dssp --------------EEECCCSSCBCTTTCEECTTSSEEEEEETTT---EEEEEETTTCCEE-EEEECCTTEEEEEEEEEC
T ss_pred --------------EEEeecCCCCccccceECCCCCEEEEEEcCC---cEEEEECCCCCcE-EEEecccccCCCCCEEEe
Confidence 1111122222 23478999999999999877 8999999887764 333 23332222
Q ss_pred -------------EEEeCCCCEEEEE------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECC---
Q 005235 545 -------------SVFHPTRSIFFVS------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSRE--- 601 (707)
Q Consensus 545 -------------v~fspd~~~l~v~------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~D--- 601 (707)
+.|+|++..++++ .+..|.+||+.+++..... .+...+..+.|+| +|..|+..+.+
T Consensus 134 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 134 SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCC
Confidence 3457777766543 2578999999988765444 4557799999999 78877776654
Q ss_pred ---CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccCCCCCCcccceEEee
Q 005235 602 ---GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSDD-----CTAYVFHGMVYSDLNQNPLIVPLEILR 671 (707)
Q Consensus 602 ---g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~D-----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~ 671 (707)
..|.+||+..+ . ...+..+. ..+..++|+|+|+.|+.++.+ +.|++| |+.++.. ..+.
T Consensus 213 ~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~------d~~~g~~----~~l~ 280 (396)
T 3c5m_A 213 LVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA------NPETLEN----EEVM 280 (396)
T ss_dssp SCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE------CTTTCCE----EEEE
T ss_pred CCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE------ECCCCCe----EEee
Confidence 35888888654 3 33343332 358889999999977766544 449999 4444332 2222
Q ss_pred CCCCCCCCCeeEEEEcC-CCCEEEEEe----------------CCCcEEEEeC
Q 005235 672 GHTSSNGRGVMDCKFHP-RQPWLFTAG----------------ADSVIRLYCH 707 (707)
Q Consensus 672 gh~~~~~~gV~~l~fsp-dg~~L~s~g----------------~Dg~IrlWdl 707 (707)
.... .. ++|+| +|++|++++ .++.|.+|++
T Consensus 281 ~~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 281 VMPP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp ECCS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred eCCC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 1111 33 89999 999988765 3467999874
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.4e-12 Score=138.51 Aligned_cols=254 Identities=9% Similarity=0.057 Sum_probs=173.0
Q ss_pred CCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 396 TDGTVRIWEVESGRCLRVLE-------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~-------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
.+++|.+||..+++....+. .......+++..+. .+++...++.|.+||+.++...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~--lyv~~~~~~~v~viD~~t~~~~--------------- 77 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGI--GWIVVNNSHVIFAIDINTFKEV--------------- 77 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTE--EEEEEGGGTEEEEEETTTCCEE---------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCE--EEEEEcCCCEEEEEECcccEEE---------------
Confidence 48999999999998776542 13456788885432 3444445688999998765321
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC------Ce
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG------LP 542 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~------~V 542 (707)
........+..++++++|..+++...++ .|.++|+.++... ..+.... .+
T Consensus 78 --------------------~~i~~~~~p~~i~~~~~g~lyv~~~~~~---~v~~iD~~t~~~~-~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 78 --------------------GRITGFTSPRYIHFLSDEKAYVTQIWDY---RIFIINPKTYEIT-GYIECPDMDMESGST 133 (328)
T ss_dssp --------------------EEEECCSSEEEEEEEETTEEEEEEBSCS---EEEEEETTTTEEE-EEEECTTCCTTTCBC
T ss_pred --------------------EEcCCCCCCcEEEEeCCCeEEEEECCCC---eEEEEECCCCeEE-EEEEcCCccccCCCc
Confidence 1112346688999999985444443566 9999999988765 4552222 56
Q ss_pred EEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----------CcEEEEEC
Q 005235 543 VSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----------GKLCWFDM 609 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----------g~I~vwDl 609 (707)
..+++ ++..|+++. ++.|.+||+.+++.+.++... .....++++|+|++++++..+ +.|.++|.
T Consensus 134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp CCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred ceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 67777 345555553 689999999999998888765 346789999999877776554 78999999
Q ss_pred CCCCcceEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235 610 DLSSKPYRVLKCH-PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP 688 (707)
Q Consensus 610 ~~~~~~~~~l~~h-~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp 688 (707)
.++ +....+... ......++|+|++..|+++.. .|.+||.. +.... ....+..+.. ....++++|
T Consensus 211 ~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~------t~~~~-~~~~~~~~~~----~p~gi~vdp 276 (328)
T 3dsm_A 211 ETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE------ADRVP-VRPFLEFRDT----KYYGLTVNP 276 (328)
T ss_dssp TTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT------CSSCC-SSCSBCCCSS----CEEEEEECT
T ss_pred CCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC------CCcee-eeeeecCCCC----ceEEEEEcC
Confidence 876 555555432 236899999999998877654 89999653 22221 0111111122 389999999
Q ss_pred C-CCEEEEE----eCCCcEEEEeC
Q 005235 689 R-QPWLFTA----GADSVIRLYCH 707 (707)
Q Consensus 689 d-g~~L~s~----g~Dg~IrlWdl 707 (707)
+ +..+++. ..++.|.+|+.
T Consensus 277 ~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp TTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCCeEEEEcccccccCCEEEEECC
Confidence 4 5555555 56889999974
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=1.6e-12 Score=132.52 Aligned_cols=233 Identities=7% Similarity=0.043 Sum_probs=161.2
Q ss_pred cEEEEEEccCCCccEEE-E-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 419 AIQYVAWNPLPELPVLA-V-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla-~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
...+|++++++ .+++ + +.++.|.+|+..+.... . ....+...
T Consensus 25 ~p~~i~~~~~g--~l~v~~~~~~~~i~~~~~~~~~~~-------------------------~---------~~~~~~~~ 68 (270)
T 1rwi_B 25 SPSGVAVDSAG--NVYVTSEGMYGRVVKLATGSTGTT-------------------------V---------LPFNGLYQ 68 (270)
T ss_dssp CEEEEEECTTC--CEEEEECSSSCEEEEECC-----E-------------------------E---------CCCCSCCS
T ss_pred CccceEECCCC--CEEEEccCCCCcEEEecCCCcccc-------------------------e---------EeeCCcCC
Confidence 67899999999 3555 4 46678888875432110 0 00122346
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI 573 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~ 573 (707)
+.+++++++|..+++.. ++ .|.+|+..+.... .+ .....+.++++++++.++++.. ++.|.+|+..+....
T Consensus 69 p~~i~~~~~g~l~v~~~-~~---~i~~~d~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF-NN---RVVTLAAGSNNQT--VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp CCCEEECTTCCEEEEET-TT---EEEEECTTCSCCE--ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred cceeEECCCCCEEEEcC-CC---EEEEEeCCCceEe--eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 78899999999666655 55 8999998776543 33 3336789999999998666655 689999987655433
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.....+...+.+|+++|+|.++++...++.|.+||.... ........+...+.+++++++|.++++...++.|.+|+.
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~- 220 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA- 220 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT-
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC-
Confidence 222233346789999999997777777889999998765 322222233367899999999988888888899999953
Q ss_pred cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
..... ......+... +.+++++++|.++++...+++|+++++
T Consensus 221 -----~~~~~---~~~~~~~~~~----p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 221 -----GSTTS---TVLPFTGLNT----PLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp -----TCSCC---EECCCCSCSC----EEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred -----CCCcc---eeeccCCCCC----ceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 22221 1111122222 899999999998888889999999874
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=7.6e-13 Score=140.19 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=130.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C------------
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K------------ 559 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d------------ 559 (707)
..+.+++|+|+|++|++++.++ ....|.+|++.++... ....... +.+++|+|+++.|+.++ +
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 5678999999999999887653 2446888899887654 3333334 99999999999888765 3
Q ss_pred ---------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-------cEEEEECCCCCcceE
Q 005235 560 ---------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG-------KLCWFDMDLSSKPYR 617 (707)
Q Consensus 560 ---------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-------~I~vwDl~~~~~~~~ 617 (707)
..|.+||+.+++.+..+.. . .+.+++|+|+| ++++++.++ ...||.++++ . ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-c-eE
Confidence 5799999998887555655 3 78899999999 777776542 3445544432 3 44
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEEcC
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDC--------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKFHP 688 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg--------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~fsp 688 (707)
.+..+ ..+.++ +|+|+.|+.++.++ .|.+| + ++.. ...+.+|... +.. +.|+
T Consensus 212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~------d--~~~~---~~l~~~~~~~----~~~~~~~s- 272 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY------D--GKEV---MGILDEVDRG----VGQAKIKD- 272 (347)
T ss_dssp EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE------C--SSCE---EESSTTCCSE----EEEEEEET-
T ss_pred EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEE------C--CCce---EeccccCCcc----cCCccEEc-
Confidence 45445 555554 99999888777543 57777 3 1211 2223344444 776 9999
Q ss_pred CCCEEEEEeCCCcEEEE
Q 005235 689 RQPWLFTAGADSVIRLY 705 (707)
Q Consensus 689 dg~~L~s~g~Dg~IrlW 705 (707)
++ ++++++.++.++||
T Consensus 273 dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 273 GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp TE-EEEEEEETTEEEEE
T ss_pred Cc-EEEEEecCCcEEEE
Confidence 88 99999999999998
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=6.9e-11 Score=121.63 Aligned_cols=256 Identities=9% Similarity=-0.001 Sum_probs=174.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
+.+.++...++.|.+|+.. ++.. .+.. ...+.+|++.+++ .++++.. ++.|..|+.. +
T Consensus 26 g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g------------- 87 (299)
T 2z2n_A 26 GKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDG--EVWFTENAANKIGRITKK-G------------- 87 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-S-------------
T ss_pred CCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCC--CEEEeCCCCCeEEEECCC-C-------------
Confidence 3456655567899999988 6543 3332 5679999999998 4666654 6788888753 1
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
.+..+.. ......+.++++.++|..+++...++ .|.+++. .+......+ .....+
T Consensus 88 ------------~~~~~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 88 ------------IIKEYTL--------PNPDSAPYGITEGPNGDIWFTEMNGN---RIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp ------------CEEEEEC--------SSTTCCEEEEEECTTSCEEEEETTTT---EEEEECT-TCCEEEEECSSTTCCE
T ss_pred ------------cEEEEeC--------CCcCCCceeeEECCCCCEEEEecCCc---eEEEECC-CCCEEEecCCCCCCCC
Confidence 1122211 12345688999999998888776655 8999998 444331223 345678
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
.++++.+++.++++.. ++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+||. ++......+.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 221 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP 221 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC
Confidence 9999999998777665 689999999 6665432 2334456899999999987777667889999999 5532111233
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
.+...+.+++++++|.++++...++.|.+|+. .+. +..+ ..+... +.++++ +++.++++.+.
T Consensus 222 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-------~g~----~~~~~~~~~~~~----~~~i~~-~~g~l~v~~~~ 285 (299)
T 2z2n_A 222 TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-------NNI----IEEYPIQIKSAE----PHGICF-DGETIWFAMEC 285 (299)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEEET-------TTE----EEEEECSSSSCC----EEEEEE-CSSCEEEEETT
T ss_pred CCCCCceeEEECCCCCEEEeccCCceEEEECC-------CCc----eEEEeCCCCCCc----cceEEe-cCCCEEEEecC
Confidence 34567999999999998887767889999953 111 2222 233333 899999 88887777664
Q ss_pred CCcEE
Q 005235 699 DSVIR 703 (707)
Q Consensus 699 Dg~Ir 703 (707)
++.++
T Consensus 286 ~~l~~ 290 (299)
T 2z2n_A 286 DKIGK 290 (299)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 44443
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=9.1e-12 Score=132.13 Aligned_cols=224 Identities=8% Similarity=0.007 Sum_probs=160.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
.+.++...+++|.+||..+++.+.++........|++++++ .++++. .++.|.+||+.++...
T Consensus 55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~-------------- 118 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEIT-------------- 118 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEEE--------------
T ss_pred EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeEE--------------
Confidence 35556667899999999999999999877889999999998 466666 7889999998765211
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC--CCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP--AGESRAIFMHQLSKKLSHRIPFKLHGLPVSS 545 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~--dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v 545 (707)
..+.... ..+.......+++ ++..|.++.. ++ .|.++|+.++... ..+........+
T Consensus 119 ----------~~i~~g~-----~~~~~~~p~~i~~--~~~~lyv~~~~~~~---~v~viD~~t~~~~-~~i~~g~~p~~i 177 (328)
T 3dsm_A 119 ----------GYIECPD-----MDMESGSTEQMVQ--YGKYVYVNCWSYQN---RILKIDTETDKVV-DELTIGIQPTSL 177 (328)
T ss_dssp ----------EEEECTT-----CCTTTCBCCCEEE--ETTEEEEEECTTCC---EEEEEETTTTEEE-EEEECSSCBCCC
T ss_pred ----------EEEEcCC-----ccccCCCcceEEE--ECCEEEEEcCCCCC---EEEEEECCCCeEE-EEEEcCCCccce
Confidence 0110000 0011124556677 3455555543 44 9999999998776 556444556789
Q ss_pred EEeCCCCEEEEEe-C----------CeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235 546 VFHPTRSIFFVST-K----------KNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 546 ~fspd~~~l~v~s-d----------g~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
+++|++++++++. + +.|.++|..+++....+... ......|+|+|++++|.++.. .|.+||+.++.
T Consensus 178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 9999998766655 3 68999999999988777643 246899999999999988765 89999998763
Q ss_pred cce-EEeecCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEe
Q 005235 614 KPY-RVLKCHPKDITNVAFHR-SYPLFASC----SDDCTAYVFH 651 (707)
Q Consensus 614 ~~~-~~l~~h~~~I~~vafsp-dg~llaSg----s~Dg~I~Vwd 651 (707)
... ..+..+.....+++++| ++.++++. ..++.|.+|+
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 211 11222245688999999 66777777 6789999994
No 186
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.50 E-value=2.5e-12 Score=138.56 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=163.9
Q ss_pred CcEEEEEe----------CCCcEEEEeCCCCeEEEEEec-------CCcEEEEEEccCCCccEEEEEe--CCeEEEEECC
Q 005235 388 CYLEYKGS----------TDGTVRIWEVESGRCLRVLEI-------GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTG 448 (707)
Q Consensus 388 ~~~l~sgs----------~DgtVrIWd~~tg~~l~~l~~-------~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~ 448 (707)
+.++|+++ .+++|.+||+.+++.+.++.. ......++|+|+|. .|+++.. ++.|.+||+.
T Consensus 61 g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~ 139 (361)
T 2oiz_A 61 GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVA 139 (361)
T ss_dssp SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETT
T ss_pred CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECC
Confidence 34777765 367899999999999988875 24567899999994 5666654 5799999998
Q ss_pred CCCchhc-ccccceeee-cc-----cccccCCCCcEEEEecCC-ccceEE-------eccCCCeEEEEEcCCCCEEEEEe
Q 005235 449 LGNEEEQ-RRVKDLLHV-ET-----PTAPDDNMASIVSWLQHD-KLDGIR-------LRHFKMVSSVEWHRRGDYLSTVM 513 (707)
Q Consensus 449 ~~~~~~~-~~~~~v~~~-~~-----~~~~~~~d~~i~iW~~~~-~~~~~~-------~~h~~~V~~v~~sp~g~~lat~s 513 (707)
++..... -.......+ .+ .+++.+.++.+..|+... ...... ..... ...+.+++++..++..+
T Consensus 140 ~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 218 (361)
T 2oiz_A 140 KGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVS 218 (361)
T ss_dssp TTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEB
T ss_pred CCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEe
Confidence 8743211 101010000 01 134455678888887653 222100 01111 12334467788888888
Q ss_pred CCCCccEEEEEECCCCceee-eeec-----------cCCCeEEEEEeCCCCEEEEEe------------CCeEEEEECCC
Q 005235 514 PAGESRAIFMHQLSKKLSHR-IPFK-----------LHGLPVSSVFHPTRSIFFVST------------KKNIRVYDLLK 569 (707)
Q Consensus 514 ~dg~~~~V~Iwdl~~~~~~~-~~~~-----------~~~~V~~v~fspd~~~l~v~s------------dg~I~iwDl~~ 569 (707)
.++ .|.++|+....... .++. .......++|+|++..++++. .+.|.+||+.+
T Consensus 219 ~~~---~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 219 YYG---NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp TTS---EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred CCC---eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 776 89999997654221 1110 012223478999998888764 24899999999
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCC
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYP 636 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~ 636 (707)
++.+.++..+. +.+|+|+|+|++|++++. +.|.+||+.++. +.+..+..+...-+.++|+|+|.
T Consensus 296 ~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 296 KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999886 999999999999998887 999999998751 45666666777889999999985
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=2.7e-12 Score=150.39 Aligned_cols=236 Identities=10% Similarity=0.025 Sum_probs=155.5
Q ss_pred cEEEEEEccCCCccEE-EEEeC----CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235 419 AIQYVAWNPLPELPVL-AVSVG----QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH 493 (707)
Q Consensus 419 ~V~~v~~spdg~~~ll-a~s~d----~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h 493 (707)
.+.+++|||||. .|+ +...+ ..|++||+.++.... ..+
T Consensus 122 ~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------~~~ 164 (695)
T 2bkl_A 122 SLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------VDV 164 (695)
T ss_dssp EEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------SCC
T ss_pred EEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------Ccc
Confidence 689999999994 333 22223 367888876653210 011
Q ss_pred CCC--eEEEEEcCCCCEEEEEeCCCC----------ccEEEEEECCCCceee-eee---ccCCCeEEEEEeCCCCEEEEE
Q 005235 494 FKM--VSSVEWHRRGDYLSTVMPAGE----------SRAIFMHQLSKKLSHR-IPF---KLHGLPVSSVFHPTRSIFFVS 557 (707)
Q Consensus 494 ~~~--V~~v~~sp~g~~lat~s~dg~----------~~~V~Iwdl~~~~~~~-~~~---~~~~~V~~v~fspd~~~l~v~ 557 (707)
... ...++|+|+|+.|+.++.+.. ...|++|++.++.... ..+ .+...+.++.|+|+|++|+++
T Consensus 165 ~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 165 IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence 111 267899999999999988652 3459999999876421 223 234578899999999988876
Q ss_pred e-CC----eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCc-ceEEeecC--CCC
Q 005235 558 T-KK----NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSK-PYRVLKCH--PKD 625 (707)
Q Consensus 558 s-dg----~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~-~~~~l~~h--~~~ 625 (707)
+ ++ .|++++..+++. ..+..+...+....+ ++|. |++.+. ++.|.+||+.++.. ....+..| ...
T Consensus 245 ~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 245 ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 6 44 677777655543 345555556666666 5666 554443 57899999976531 13444444 456
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEEE----eCCC
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFTA----GADS 700 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s~----g~Dg 700 (707)
|.+++|+ ++.+++++..|+..+||.+. +. +. .+..+..+ ... |..++++|++..|+.. ...+
T Consensus 322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~----~~-g~---~~~~l~~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLKDATSEVRVAT----LK-GK---PVRTVQLPGVGA----ASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEE----TT-CC---EEEECCCSSSSE----ECCCBSCTTCSEEEEEEEETTEEE
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEe----CC-CC---eeEEecCCCCeE----EEEeecCCCCCEEEEEEcCCCCCC
Confidence 8889998 77799999999999998543 21 21 23445544 333 7888899999877632 2347
Q ss_pred cEEEEeC
Q 005235 701 VIRLYCH 707 (707)
Q Consensus 701 ~IrlWdl 707 (707)
+|++||+
T Consensus 389 ~v~~~d~ 395 (695)
T 2bkl_A 389 QIYKTSV 395 (695)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8999875
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.48 E-value=5.7e-12 Score=130.88 Aligned_cols=213 Identities=11% Similarity=0.026 Sum_probs=151.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeeccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
+++++..++.|.+|+..++ ...+.. ...+.+++|+|+| .++++.. ++.|.+|++.++...
T Consensus 42 l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~~~~~~~i~~~d~~~g~~~-------------- 103 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIACSHGLRRLERQREPGGEWE-------------- 103 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEEETTTTEEEEECSTTCCEE--------------
T ss_pred EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEEecCCCeEEEEcCCCCcEE--------------
Confidence 7888999999999999887 555555 6779999999999 4666664 478999987655321
Q ss_pred ccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC--------------CccEEEEEECCCCcee
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG--------------ESRAIFMHQLSKKLSH 532 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg--------------~~~~V~Iwdl~~~~~~ 532 (707)
.... ... .....+..++++++|+++++.+..+ ..+.|..++.. +..
T Consensus 104 -----------~~~~------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~- 164 (296)
T 3e5z_A 104 -----------SIAD------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL- 164 (296)
T ss_dssp -----------EEEC------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred -----------EEee------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence 0000 000 1123567899999999888743110 11256666655 333
Q ss_pred eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-CCeE---EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235 533 RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-KQRL---IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW 606 (707)
Q Consensus 533 ~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~~~~---~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v 606 (707)
..+ .....+..++|+|++..+++.+ ++.|.+|++. ++++ ...+..+...+.+|+++++|.++++. ++.|.+
T Consensus 165 -~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 165 -SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp -EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred -EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 334 5666788999999999995455 6899999987 5554 33443344557889999999866655 789999
Q ss_pred EECCCCCcceEEeecCCCCEEEEEE-cCCCCEEEEEeCCC
Q 005235 607 FDMDLSSKPYRVLKCHPKDITNVAF-HRSYPLFASCSDDC 645 (707)
Q Consensus 607 wDl~~~~~~~~~l~~h~~~I~~vaf-spdg~llaSgs~Dg 645 (707)
||.+ + +.+..+..+.. +++++| +|++..|++++.++
T Consensus 242 ~~~~-g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 242 LTPD-G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ECTT-S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ECCC-C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 9986 4 66777877777 999999 58999888888775
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=4.8e-11 Score=136.05 Aligned_cols=261 Identities=11% Similarity=0.087 Sum_probs=177.2
Q ss_pred CcEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcEEEEEEc----cCCCccEEEE-EeCCeEEEEECCCCCchhcccc--
Q 005235 388 CYLEYKGSTDGTVRIWEVE--SGRCLRVLEIGEAIQYVAWN----PLPELPVLAV-SVGQDVLILNTGLGNEEEQRRV-- 458 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~--tg~~l~~l~~~~~V~~v~~s----pdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~-- 458 (707)
+.++|+++.|+.|.+||+. +++.+..+........++|+ |+|. .++++ -.+++|.++|..+....-.-..
T Consensus 208 Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 208 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCC-EEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence 3488889999999999996 88999888887778999999 6995 44444 4678999999877654211000
Q ss_pred ----------c-ceeeeccc------ccccCCCCcEEEEecCCccc--eEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235 459 ----------K-DLLHVETP------TAPDDNMASIVSWLQHDKLD--GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR 519 (707)
Q Consensus 459 ----------~-~v~~~~~~------~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~ 519 (707)
. .+..+..+ ++.....+.|.+++...... ...+.......++.|+|+|++|++++.. .+
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~--sn 364 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA--RN 364 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG--GT
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC--CC
Confidence 0 11111111 23334567777777654321 1133344567789999999999887753 24
Q ss_pred EEEEEECCCCceeeeeec------cCCCeEEEEEeCCC-CEEEEEe--CCeEEEEECCC-------CeEEEEEeCCCCCe
Q 005235 520 AIFMHQLSKKLSHRIPFK------LHGLPVSSVFHPTR-SIFFVST--KKNIRVYDLLK-------QRLIKKLETGLKEV 583 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~~------~~~~V~~v~fspd~-~~l~v~s--dg~I~iwDl~~-------~~~~~~l~~~~~~I 583 (707)
.|.++|+.+++.. ..+. |.+.-.. -++|++ +.++++. ++.|.++|..+ .+.++++......-
T Consensus 365 ~V~ViD~~t~kl~-~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~ 442 (567)
T 1qks_A 365 KLVVIDTKEGKLV-AIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS 442 (567)
T ss_dssp EEEEEETTTTEEE-EEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred eEEEEECCCCcEE-EEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC
Confidence 8999999998765 4342 2211112 268874 4444554 58999999987 57888887654443
Q ss_pred EEEEEcCCCCEEEEEEC-------CCcEEEEECCCC-----CcceEEeec--------CCCCEEEEEEcCCCCEEEEEe-
Q 005235 584 SSIAIHPAGDNLIVGSR-------EGKLCWFDMDLS-----SKPYRVLKC--------HPKDITNVAFHRSYPLFASCS- 642 (707)
Q Consensus 584 ~sl~~spdg~~L~sGs~-------Dg~I~vwDl~~~-----~~~~~~l~~--------h~~~I~~vafspdg~llaSgs- 642 (707)
..+.+||++++|.+... .+.|.+||+.+. ...+..+.- ....+..+.|+|+|..+..+.
T Consensus 443 ~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 443 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 45788999999998763 358999999866 344455531 245789999999999655442
Q ss_pred ----CCCcEEEEecc
Q 005235 643 ----DDCTAYVFHGM 653 (707)
Q Consensus 643 ----~Dg~I~Vwd~~ 653 (707)
.++.|.|+|..
T Consensus 523 ~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 523 NGKDQESALVVVDDK 537 (567)
T ss_dssp CCTTSCCEEEEEETT
T ss_pred cCCCCCCcEEEEECC
Confidence 37899999543
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=2.7e-11 Score=125.54 Aligned_cols=210 Identities=11% Similarity=0.022 Sum_probs=161.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG--EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE 465 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~--~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~ 465 (707)
..++++++.|+.|.+||..+|+.+..+... ..+++++++|+| .+++ +.++.|..||. ++.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG--~ilv-s~~~~V~~~d~-~G~-------------- 66 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG--EILF-SYSKGAKMITR-DGR-------------- 66 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS--CEEE-ECBSEEEEECT-TSC--------------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC--CEEE-eCCCCEEEECC-CCC--------------
Confidence 468999999999999999999999998874 378999999999 4666 56788998886 432
Q ss_pred ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee--c-----
Q 005235 466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF--K----- 537 (707)
Q Consensus 466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~--~----- 537 (707)
.+|.... .....+.++.+.++|+++++.+. ++ .|..++. .++.. ..+ .
T Consensus 67 ------------~~W~~~~-------~~~~~~~~~~~~~dG~~lv~~~~~~~---~v~~vd~-~Gk~l-~~~~~~~~~~~ 122 (276)
T 3no2_A 67 ------------ELWNIAA-------PAGCEMQTARILPDGNALVAWCGHPS---TILEVNM-KGEVL-SKTEFETGIER 122 (276)
T ss_dssp ------------EEEEEEC-------CTTCEEEEEEECTTSCEEEEEESTTE---EEEEECT-TSCEE-EEEEECCSCSS
T ss_pred ------------EEEEEcC-------CCCccccccEECCCCCEEEEecCCCC---EEEEEeC-CCCEE-EEEeccCCCCc
Confidence 3453322 12245778899999999999886 54 7777776 44433 333 1
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
.......+++.+++.++++.. ++.|.+||.. ++.+.++..+ ..+.++.+.++|+.+++++.+++|..||..++ +.+
T Consensus 123 ~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~ 199 (276)
T 3no2_A 123 PHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIV 199 (276)
T ss_dssp GGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEE
T ss_pred ccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEE
Confidence 112345677899999998887 8999999998 9999998865 45667888999999999998889999999887 666
Q ss_pred EEeecCC------CCEEEEEEcCCCCEEEEEe
Q 005235 617 RVLKCHP------KDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 617 ~~l~~h~------~~I~~vafspdg~llaSgs 642 (707)
..+..+. ..+.+++..++|.++++.+
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 6665332 2378899999999888874
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=9.4e-12 Score=126.77 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=153.7
Q ss_pred CcEEE-EEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 388 CYLEY-KGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 388 ~~~l~-sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
+.+++ +.+.++.|.+|+..++... .+.. ...+.+|++++++ .++++..++.|.+|+.......
T Consensus 35 g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~i~~~d~~~~~~~----------- 100 (270)
T 1rwi_B 35 GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG--TVYVTDFNNRVVTLAAGSNNQT----------- 100 (270)
T ss_dssp CCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC--CEEEEETTTEEEEECTTCSCCE-----------
T ss_pred CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC--CEEEEcCCCEEEEEeCCCceEe-----------
Confidence 34555 4467889999997665432 2222 3578899999998 4666666888999886543110
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
.+ .......+.+++++++|..+++...++ .|.+|+..+.... ... .....+.
T Consensus 101 --------------~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~~~~~~~~~-~~~~~~~~~p~ 153 (270)
T 1rwi_B 101 --------------VL---------PFDGLNYPEGLAVDTQGAVYVADRGNN---RVVKLAAGSKTQT-VLPFTGLNDPD 153 (270)
T ss_dssp --------------EC---------CCCSCSSEEEEEECTTCCEEEEEGGGT---EEEEECTTCCSCE-ECCCCSCCSCC
T ss_pred --------------ee---------ecCCcCCCcceEECCCCCEEEEECCCC---EEEEEECCCceeE-eeccccCCCce
Confidence 00 012235678999999999777766655 8999976554433 222 3345678
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
++++++++.++++.. ++.|.+||............+...+.+|+++++|.++++...++.|.+||.... ........+
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~ 232 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTG 232 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCS
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCC
Confidence 999999998666555 689999999876654433334367899999999977777777889999998754 222222233
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
...+.+++++++|.++++.+.++.|++|+.
T Consensus 233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp CSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 357899999999999999999999999943
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=3.3e-11 Score=125.44 Aligned_cols=233 Identities=12% Similarity=0.155 Sum_probs=160.1
Q ss_pred CCCcEEEE-------EeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCc
Q 005235 386 VACYLEYK-------GSTDGTVRIWEVESGRCLRVLE-----IGEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNE 452 (707)
Q Consensus 386 ~~~~~l~s-------gs~DgtVrIWd~~tg~~l~~l~-----~~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~ 452 (707)
.++.++++ +..++.|.+|+..+++...... ....+.+++++++ + .+++++..+.|.+|+.. +..
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~-g~~ 103 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLVVQTD-GTF 103 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEEEETT-SCE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEECCCCEEEEeCC-CCE
Confidence 34456666 5678899999998887654332 2367899999999 7 57777766788899876 421
Q ss_pred hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------------CccE
Q 005235 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------------ESRA 520 (707)
Q Consensus 453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------------~~~~ 520 (707)
.. .. .... .......+.+++++++|+++++...++ ....
T Consensus 104 ~~-------------------------~~-~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 104 EE-------------------------IA-KKDS---EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EE-------------------------CC-SBCT---TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EE-------------------------EE-eccC---CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 10 00 0000 001224578999999998887765431 0136
Q ss_pred EEEEECCCCceeeeeeccCCCeEEEEEe----CCCCEEEEEe--CCeEEEEECC-CCeE-----EEEEeCCC-CCeEEEE
Q 005235 521 IFMHQLSKKLSHRIPFKLHGLPVSSVFH----PTRSIFFVST--KKNIRVYDLL-KQRL-----IKKLETGL-KEVSSIA 587 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~~~~~~V~~v~fs----pd~~~l~v~s--dg~I~iwDl~-~~~~-----~~~l~~~~-~~I~sl~ 587 (707)
|..++.. +... ..+........++|+ |++..|+++. ++.|.+||+. +++. ...+..+. ..+..++
T Consensus 155 l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 155 IYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 7777765 4332 222444567899999 9998776664 6899999986 4542 22333333 5588999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
++++|.++++...++.|.+||..++ +.+..+..+...+.+++|+|++. ++++...++.|..|+..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 9999998888888899999999765 55666777778899999999999 55566667889999653
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.45 E-value=2.6e-11 Score=127.78 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=152.2
Q ss_pred ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235 470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH 548 (707)
Q Consensus 470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs 548 (707)
....++.++.| .......+..+...+.+++|+++|+.++++..++ .|.+|+..++... ..+ .+...+.+++|+
T Consensus 22 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 22 PIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEG---NIFKINPETKEIK-RPFVSHKANPAAIKIH 95 (333)
T ss_dssp CCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTC---EEEEECTTTCCEE-EEEECSSSSEEEEEEC
T ss_pred EEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCC---EEEEEeCCCCcEE-EEeeCCCCCcceEEEC
Confidence 33456677777 2222333556667789999999999777777766 9999999887765 333 556789999999
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEECCCCCcc
Q 005235 549 PTRSIFFVST-K----KNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSR------EGKLCWFDMDLSSKP 615 (707)
Q Consensus 549 pd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~------Dg~I~vwDl~~~~~~ 615 (707)
|++.+++++. + +.|.+||..++.....+. .....+.+++++|+|.++++... .+.|..+|...+ .
T Consensus 96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~- 173 (333)
T 2dg1_A 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-T- 173 (333)
T ss_dssp TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-C-
T ss_pred CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-E-
Confidence 9998777766 4 589999998876543343 23356899999999987776654 355666666543 2
Q ss_pred eEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccc-----eEEeeCCCCCCCCCeeEEEEcCC
Q 005235 616 YRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVP-----LEILRGHTSSNGRGVMDCKFHPR 689 (707)
Q Consensus 616 ~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p-----l~~l~gh~~~~~~gV~~l~fspd 689 (707)
+..+..+...+..++|+|++..| ++.+.++.|.+|+... ....... ...+.++ . .+..++++++
T Consensus 174 ~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~-----~g~~~~~~~~~~~~~~~~~-~----~~~~i~~d~~ 243 (333)
T 2dg1_A 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED-----DGVTIQPFGATIPYYFTGH-E----GPDSCCIDSD 243 (333)
T ss_dssp EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-----TSSSEEEEEEEEEEECCSS-S----EEEEEEEBTT
T ss_pred EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC-----CCcCcccccceEEEecCCC-C----CCCceEECCC
Confidence 33333334568899999999855 5556688999996531 1111110 1112232 1 2888999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 005235 690 QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 690 g~~L~s~g~Dg~IrlWdl 707 (707)
|.++++...++.|.+|+.
T Consensus 244 G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp CCEEEEEETTTEEEEECT
T ss_pred CCEEEEEcCCCEEEEECC
Confidence 998888888899999973
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=5.5e-10 Score=120.82 Aligned_cols=271 Identities=11% Similarity=-0.046 Sum_probs=170.4
Q ss_pred CCcEEEEEeC--CC---cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCC
Q 005235 387 ACYLEYKGST--DG---TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGN 451 (707)
Q Consensus 387 ~~~~l~sgs~--Dg---tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~ 451 (707)
++..+|.... .. +|.++|..+++.+.++.....- .++++|||. .++++. .++.|.+||+.+..
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 3455665543 22 8999999999998888774444 999999994 555554 25678888876542
Q ss_pred chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
.. ..+...... ...+......++|+|+|++|+++.... ...|.++| .+++.
T Consensus 109 ~~------------------------~~i~~~~~~---~~~~g~~p~~~~~spDG~~l~v~n~~~-~~~v~viD-~t~~~ 159 (373)
T 2mad_H 109 PI------------------------ADIELPDAP---RFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVV-QGGSS 159 (373)
T ss_pred EE------------------------EEEECCCcc---ccccCCCccceEECCCCCEEEEEecCC-CCeEEEEE-CCCCE
Confidence 11 011000000 000113356899999999999887531 23899999 88877
Q ss_pred eeee-eccCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEEEEEe-----CCCCC-eEEEEEcCCCCEEEEEECCC
Q 005235 532 HRIP-FKLHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLIKKLE-----TGLKE-VSSIAIHPAGDNLIVGSREG 602 (707)
Q Consensus 532 ~~~~-~~~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~~~l~-----~~~~~-I~sl~~spdg~~L~sGs~Dg 602 (707)
. .. +...+ ++.+.|+++..++ .+ ||.+.++|+ +++.+.... ....+ .....+.+++..++..+..+
T Consensus 160 ~-~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (373)
T 2mad_H 160 D-DQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG 234 (373)
T ss_pred E-eEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc
Confidence 6 66 53332 3556676654433 33 899999999 887663322 12222 13345667766666556788
Q ss_pred cEEEEECCCCC-cceEEeecC----------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCC
Q 005235 603 KLCWFDMDLSS-KPYRVLKCH----------PKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 603 ~I~vwDl~~~~-~~~~~l~~h----------~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~ 661 (707)
.+.+.|+.... .....+... ......++|+|++..++.+.. .+.|.++ |+.+.
T Consensus 235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI------D~~t~ 308 (373)
T 2mad_H 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV------TGLVG 308 (373)
T ss_pred eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE------ECCCC
Confidence 99999997542 112222111 123445789999887666543 3578888 44444
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl 707 (707)
.. +..+..... ..+++|+|||+ .|+++. .++.|.+||+
T Consensus 309 ~v---v~~i~~g~~-----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 309 QT---SSQISLGHD-----VDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EE---EEEEECCCC-----cCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 43 455543222 78999999999 777777 5899999984
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=2.3e-11 Score=143.59 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=157.7
Q ss_pred cEEEEEEccCCCccEEEEEe-CC----eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235 419 AIQYVAWNPLPELPVLAVSV-GQ----DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH 493 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~-d~----~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h 493 (707)
.+.+++|||||. .|+.++. +| .|++||+.++... ....+
T Consensus 164 ~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~-----------------------------------~~~~~ 207 (741)
T 1yr2_A 164 ALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPL-----------------------------------ADELK 207 (741)
T ss_dssp EEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEE-----------------------------------EEEEE
T ss_pred EEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCC-----------------------------------CccCC
Confidence 688999999994 4444433 23 5888887665321 11011
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCC-----------ccEEEEEECCCCceee-eeec---cCCCeEEEEEeCCCCEEEEEe
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGE-----------SRAIFMHQLSKKLSHR-IPFK---LHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~-----------~~~V~Iwdl~~~~~~~-~~~~---~~~~V~~v~fspd~~~l~v~s 558 (707)
...+..++|+|+ +.|+.++.++. ...|.+|++.++.... ..+. +...+..+.|+|+|++|+.++
T Consensus 208 ~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 208 WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence 112357899999 99999887663 3469999998776421 2332 223588999999999888765
Q ss_pred -CC-----eEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCC-CcceEEeecCCCC
Q 005235 559 -KK-----NIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLS-SKPYRVLKCHPKD 625 (707)
Q Consensus 559 -dg-----~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~-~~~~~~l~~h~~~ 625 (707)
++ .|++||+.++ ++...+..+...+.... +|+|+.|+..+.+ +.|.+||+..+ ......+..+...
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 43 8999999877 31456666555555553 4899999888764 45999999764 2334444455556
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEE-EEe---CCC
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLF-TAG---ADS 700 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~-s~g---~Dg 700 (707)
+.+++|+ ++.++++...|+..+||.+. +. +. .+..+..+ ... |..++|+|+++.|+ +.+ ..+
T Consensus 366 l~~~~~~-~~~lv~~~~~dg~~~l~~~~----~~-g~---~~~~l~~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 366 LESVGIA-GNRLFASYIHDAKSQVLAFD----LD-GK---PAGAVSLPGIGS----ASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp EEEEEEE-BTEEEEEEEETTEEEEEEEE----TT-SC---EEEECBCSSSCE----EEEEECCBTCSCEEEEEEETTEEE
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEe----CC-CC---ceeeccCCCCeE----EEEeecCCCCCEEEEEEcCCCCCC
Confidence 7788887 66788899999998888542 21 21 23445432 333 88999999998665 322 347
Q ss_pred cEEEEeC
Q 005235 701 VIRLYCH 707 (707)
Q Consensus 701 ~IrlWdl 707 (707)
+|.+||+
T Consensus 433 ~i~~~d~ 439 (741)
T 1yr2_A 433 TVLALDP 439 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888874
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=1.7e-11 Score=143.89 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=150.0
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235 399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV 478 (707)
Q Consensus 399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~ 478 (707)
+|++||+.+|+.+........+.+++|+|||+ .|+.++.++. .. .. . .. .........|.
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~------~~-~~--~---~~-------~~~~~~~~~v~ 211 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGK-GMFYNAYPQQ------DG-KS--D---GT-------ETSTNLHQKLY 211 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCEEECTTSS-EEEEEECCCC------SS-CC--S---SS-------CCCCCCCCEEE
T ss_pred EEEEEECCCCCCCcccccCcccceEEEEeCCC-EEEEEEECCc------cc-cc--c---cc-------ccccCCCCEEE
Confidence 89999999999876433333367899999994 5666666543 00 00 0 00 00000112244
Q ss_pred EEecCCccce---EEe--ccCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCC------Cc-eeeeee-ccCCCeE
Q 005235 479 SWLQHDKLDG---IRL--RHFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSK------KL-SHRIPF-KLHGLPV 543 (707)
Q Consensus 479 iW~~~~~~~~---~~~--~h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~------~~-~~~~~~-~~~~~V~ 543 (707)
+|++.+.... +.. .|...+..++|+|+|++|+.++..+. ...|.+||+.+ +. .. ..+ .+...+.
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~l~~~~~~~~ 290 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW-VKLIDNFEGEY 290 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-EEEECSSSSCE
T ss_pred EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-EEeeCCCCcEE
Confidence 4444332211 111 24556789999999999998875332 35899999986 43 23 455 5555554
Q ss_pred EEEEeCCCCEEEEEe-C----CeEEEEECCCCe--EEEEEeCCCC--CeEEEEEcCCCCEEEEEECCCc--EEEEECCCC
Q 005235 544 SSVFHPTRSIFFVST-K----KNIRVYDLLKQR--LIKKLETGLK--EVSSIAIHPAGDNLIVGSREGK--LCWFDMDLS 612 (707)
Q Consensus 544 ~v~fspd~~~l~v~s-d----g~I~iwDl~~~~--~~~~l~~~~~--~I~sl~~spdg~~L~sGs~Dg~--I~vwDl~~~ 612 (707)
. .|+|+|..|+..+ . ..|.+||+.++. ....+..+.. .+.+++|++++.+++++..++. |.+||+.++
T Consensus 291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 4 5888998877765 2 369999998764 2345555544 5888999988888888888885 566777555
Q ss_pred CcceEEeecCCCCEEEEEEcCCCCEEE-EEe---CCCcEEEEecc
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYPLFA-SCS---DDCTAYVFHGM 653 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~lla-Sgs---~Dg~I~Vwd~~ 653 (707)
+....+..+...|..++++|++..|+ +.+ ..++|++||+.
T Consensus 370 -~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 370 -ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp -CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred -CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 56677887888899999999987554 333 34789999654
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=8.8e-10 Score=113.26 Aligned_cols=234 Identities=9% Similarity=-0.030 Sum_probs=163.2
Q ss_pred CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
...+.+|++.++| .++++.. ++.|.+|++. +. +..+.. ..+..
T Consensus 14 ~~~~~~i~~d~~g--~l~v~~~~~~~v~~~d~~-~~-------------------------~~~~~~--------~~~~~ 57 (299)
T 2z2n_A 14 DTGPYGITVSDKG--KVWITQHKANMISCINLD-GK-------------------------ITEYPL--------PTPDA 57 (299)
T ss_dssp SCCEEEEEECTTS--CEEEEETTTTEEEEECTT-CC-------------------------EEEEEC--------SSTTC
T ss_pred CCCccceEECCCC--CEEEEecCCCcEEEEcCC-CC-------------------------eEEecC--------CcccC
Confidence 3678999999999 4666665 6789888865 31 111111 12346
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI 573 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~ 573 (707)
.+.+++++++|..+++...++ .|..|+... ......+ .....+.++++++++.++++.. ++.|.+||. +++..
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAAN---KIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTT---EEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ceeeEEECCCCCEEEeCCCCC---eEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 788999999999888766556 899999863 3221222 2456789999999998777765 689999998 55544
Q ss_pred EE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 574 KK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV-LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 574 ~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~-l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
.. +......+.+++++++|..+++...++.|..||. ++ ..... +..+...+.+++++++|.++++...++.|.+|+
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 32 2223456899999999988877777789999998 44 32222 333456789999999999888877788999994
Q ss_pred cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
. ++... ...+..+... +.+++++++|.++++...++.|.+|+
T Consensus 211 ------~-~g~~~--~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 211 ------T-SGEIT--EFKIPTPNAR----PHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp ------T-TCCEE--EEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred ------C-CCcEE--EEECCCCCCC----ceeEEECCCCCEEEeccCCceEEEEC
Confidence 3 22211 1112223333 89999999999777766778888887
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1.4e-09 Score=111.69 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=173.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
+.+.++...++.|.+|+.. ++... +.. ...+.+|++.+++ .++++.. ++.|..|+.. +.
T Consensus 31 g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~v~~~d~~-g~------------ 93 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLG--DIWFTENGANKIGKLSKK-GG------------ 93 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC------------
T ss_pred CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCC--CEEEEecCCCeEEEECCC-CC------------
Confidence 3466666678999999987 66543 333 3679999999998 4666554 5778888754 21
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
+..+.. ......+.++++.++|.++++...++ .|..++.. +......+ .....+
T Consensus 94 -------------~~~~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 94 -------------FTEYPL--------PQPDSGPYGITEGLNGDIWFTQLNGD---RIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp -------------EEEEEC--------SSTTCCEEEEEECSTTCEEEEETTTT---EEEEECTT-SCEEEEECSSTTCCE
T ss_pred -------------eEEecC--------CCCCCCCccceECCCCCEEEEccCCC---eEEEECCC-CCEEEccCCCCCCCc
Confidence 111111 11235688999999999887776555 89999987 44431233 345678
Q ss_pred EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
.++++.+++.++++.. ++.|.+||. +++.... +..+...+.+++++++|.++++....+.|.+||. .+......+.
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 226 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP 226 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence 9999999999655555 688999998 5554432 2233456899999999987777666778999998 3422222233
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
.+...+.+++++++|.++++...++.|.+|+ . ++.. . ...+...... +.++++.++|.++++.. .
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~------~-~g~~-~-~~~~~~~~~~----~~~i~~~~~g~l~v~~~-~- 291 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRIT------N-DNTI-Q-EYQLQTENAE----PHGITFGKDGSVWFALK-C- 291 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEEC------T-TSCE-E-EEECCSTTCC----CCCEEECTTSCEEEECS-S-
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEEC------C-CCcE-E-EEECCccCCc----cceeEeCCCCCEEEEcc-C-
Confidence 3456789999999999888777788999994 3 1211 1 1112222233 88999999998666655 4
Q ss_pred cEEEEe
Q 005235 701 VIRLYC 706 (707)
Q Consensus 701 ~IrlWd 706 (707)
.|..++
T Consensus 292 ~i~~~~ 297 (300)
T 2qc5_A 292 KIGKLN 297 (300)
T ss_dssp EEEEEE
T ss_pred ceEEeC
Confidence 565554
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=3.4e-10 Score=117.70 Aligned_cols=238 Identities=12% Similarity=0.079 Sum_probs=157.9
Q ss_pred CCcEEEEEEccCCCccEEEE--------EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235 417 GEAIQYVAWNPLPELPVLAV--------SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG 488 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~--------s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~ 488 (707)
-....+++|++++ .++++ ..++.|.+|++.++.. ..+...
T Consensus 17 ~~~~~~~~~~~~g--~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------------------~~~~~~----- 64 (314)
T 1pjx_A 17 IPGAEGPVFDKNG--DFYIVAPEVEVNGKPAGEILRIDLKTGKK-------------------------TVICKP----- 64 (314)
T ss_dssp CTTCEEEEECTTS--CEEEEETTCEETTEECCEEEEECTTTCCE-------------------------EEEECC-----
T ss_pred CCCccCceECCCC--CEEEEEeccccCCCCCCEEEEEeCCCCcE-------------------------EEEEec-----
Confidence 3456899999988 46655 6778899988655421 111100
Q ss_pred EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeee-e-c----cCCCeEEEEEeCCCCEEEEEe-C-
Q 005235 489 IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-K----LHGLPVSSVFHPTRSIFFVST-K- 559 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~----~~~~V~~v~fspd~~~l~v~s-d- 559 (707)
...++...+.+++++++ |..+++.. .. .|.+|+.. +... .. . . ....+.++++++++.++++.. +
T Consensus 65 ~~~~~~~~~~~i~~~~~~g~l~v~~~-~~---~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 65 EVNGYGGIPAGCQCDRDANQLFVADM-RL---GLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EETTEECCEEEEEECSSSSEEEEEET-TT---EEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred ccCCCCCCCceEEEecCCCcEEEEEC-CC---CEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcc
Confidence 00123456889999999 66555443 33 78999988 5543 33 2 1 123578999999998777665 3
Q ss_pred --------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEc----CCCCEEEEE-ECCCcEEEEECCCCCc-----c
Q 005235 560 --------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIH----PAGDNLIVG-SREGKLCWFDMDLSSK-----P 615 (707)
Q Consensus 560 --------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~s----pdg~~L~sG-s~Dg~I~vwDl~~~~~-----~ 615 (707)
+.|..||.. ++..... .+......++|+ |+|+.|+++ +.++.|.+||+..... .
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~ 216 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred cccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence 567778776 5544332 233457899999 999766555 5678999999862112 2
Q ss_pred eEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 616 YRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 616 ~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
+..+..+. ..+..++++++|.++++...++.|.+|+ ..++.. +..+..+... +.+++|+|++.+|+
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d------~~~g~~---~~~~~~~~~~----~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG------PDGGQP---KMRIRCPFEK----PSNLHFKPQTKTIF 283 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC------TTCBSC---SEEEECSSSC----EEEEEECTTSSEEE
T ss_pred EEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc------CCCCcE---eEEEeCCCCC----ceeEEECCCCCEEE
Confidence 23333343 5688999999999999888889999994 332222 3445555444 99999999999665
Q ss_pred -EEeCCCcEEEEeC
Q 005235 695 -TAGADSVIRLYCH 707 (707)
Q Consensus 695 -s~g~Dg~IrlWdl 707 (707)
+...++.|..|++
T Consensus 284 v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 284 VTEHENNAVWKFEW 297 (314)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCeEEEEeC
Confidence 4455678888864
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=3.5e-12 Score=149.44 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=145.0
Q ss_pred EeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCe-------------EEEEECCCCCchhccccc
Q 005235 394 GSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQD-------------VLILNTGLGNEEEQRRVK 459 (707)
Q Consensus 394 gs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~-------------V~lwd~~~~~~~~~~~~~ 459 (707)
|+.+.+|++||+.+|+.+..-.. .....+++|+|||. .|+.++.+.. |++|++.++...
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------ 215 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------ 215 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------
T ss_pred CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------
Confidence 44567899999999986411011 12226899999994 6777766554 555555443110
Q ss_pred ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee-c
Q 005235 460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF-K 537 (707)
Q Consensus 460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~-~ 537 (707)
...++ ....+...+.+++|+|+|++|+.++.++ ....|.+++..++.. ..+ .
T Consensus 216 ----------------~~lv~--------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~ 269 (695)
T 2bkl_A 216 ----------------DTVVH--------ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVK 269 (695)
T ss_dssp ----------------CEEEE--------CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEE
T ss_pred ----------------ceEEE--------ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeec
Confidence 00000 0113456788999999999998887654 345777777655543 444 5
Q ss_pred cCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCCCeE--EEEEeCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 538 LHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLKQRL--IKKLETG--LKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~~~~--~~~l~~~--~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
+...+....+ +++.+++.+. ++.|.+||+.++.. ...+..+ ...+.+++|+ ++.+++++..|+..+||.+
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 5556667777 4555444443 37899999987642 2334433 3458888988 6778888899998888766
Q ss_pred CCCCcceEEeecC-CCCEEEEEEcCCCCEEE-EEe---CCCcEEEEecc
Q 005235 610 DLSSKPYRVLKCH-PKDITNVAFHRSYPLFA-SCS---DDCTAYVFHGM 653 (707)
Q Consensus 610 ~~~~~~~~~l~~h-~~~I~~vafspdg~lla-Sgs---~Dg~I~Vwd~~ 653 (707)
+........+..+ ...|..++++|++..|+ +.+ ..++|++||+.
T Consensus 348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 5333455666655 66788899999998665 222 34789999653
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=3.8e-10 Score=117.65 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=151.5
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235 385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
+..+.++++....+.|..|+..++.. ..+.....+.+++++++| .++++. ++.|.+|++.++....
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG--~l~v~~-~~~l~~~d~~~g~~~~---------- 87 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG--GYVATI-GTKFCALNWKEQSAVV---------- 87 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS--SEEEEE-TTEEEEEETTTTEEEE----------
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC--CEEEEE-CCeEEEEECCCCcEEE----------
Confidence 34556888888899999999988765 456667889999999999 365554 6789999976542110
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeee-c
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPF-K 537 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~-~ 537 (707)
+...... .....+..++++++|+++++...... ...-.||.+...... ..+ .
T Consensus 88 --------------~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~ 146 (297)
T 3g4e_A 88 --------------LATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFD 146 (297)
T ss_dssp --------------EEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEE
T ss_pred --------------EEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEee
Confidence 0000000 11234788999999997776543210 012344444432222 223 4
Q ss_pred cCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC--CCCeEE-----EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235 538 LHGLPVSSVFHPTRSIFFVST--KKNIRVYDL--LKQRLI-----KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl--~~~~~~-----~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD 608 (707)
.......++|+|+++.|+++. ++.|.+|++ .++.+. ..+..+...+..++++++|.+.++....+.|.+||
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 445678999999999887765 689999997 455432 22222335688999999998888877788899999
Q ss_pred CCCCCcceEEeecCCCCEEEEEEc-CCCCEEEEEe
Q 005235 609 MDLSSKPYRVLKCHPKDITNVAFH-RSYPLFASCS 642 (707)
Q Consensus 609 l~~~~~~~~~l~~h~~~I~~vafs-pdg~llaSgs 642 (707)
..++ +.+..+..+...+++++|. |++..|+.++
T Consensus 227 ~~tG-~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 227 PVTG-KRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TTTC-CEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCc-eEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 9877 6777888777789999998 8877554443
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=4.6e-10 Score=116.94 Aligned_cols=224 Identities=13% Similarity=0.131 Sum_probs=148.1
Q ss_pred CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 418 EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.-..+..|+|++. .|+.+. .++.|..|++.++. +..| .....
T Consensus 13 ~~~Egp~w~~~~~-~l~~~d~~~~~i~~~d~~~~~-------------------------~~~~-----------~~~~~ 55 (297)
T 3g4e_A 13 RCGESPVWEEVSN-SLLFVDIPAKKVCRWDSFTKQ-------------------------VQRV-----------TMDAP 55 (297)
T ss_dssp SBEEEEEEETTTT-EEEEEETTTTEEEEEETTTCC-------------------------EEEE-----------ECSSC
T ss_pred ccccCCeEECCCC-EEEEEECCCCEEEEEECCCCc-------------------------EEEE-----------eCCCc
Confidence 3456889999663 444444 56788888876541 1122 33567
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-----cCCCeEEEEEeCCCCEEEEEe-C---------Ce
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-----LHGLPVSSVFHPTRSIFFVST-K---------KN 561 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-----~~~~V~~v~fspd~~~l~v~s-d---------g~ 561 (707)
+.+++++++|+++++. +. .|.+||..++... .... ....+..++++|+|.++++.. . ..
T Consensus 56 ~~~i~~~~dG~l~v~~--~~---~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 56 VSSVALRQSGGYVATI--GT---KFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp EEEEEEBTTSSEEEEE--TT---EEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred eEEEEECCCCCEEEEE--CC---eEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 8999999999965554 33 8999999877653 2221 123578899999999766543 2 22
Q ss_pred EEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECC--CCC----cceEEeecCCCCEEEEEEcC
Q 005235 562 IRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMD--LSS----KPYRVLKCHPKDITNVAFHR 633 (707)
Q Consensus 562 I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~--~~~----~~~~~l~~h~~~I~~vafsp 633 (707)
..||.+.. ++... +..+....+.++|+|+|+.|+ +.+.++.|.+||++ ++. +.+..+..+......+++.+
T Consensus 130 ~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 130 GALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp EEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred cEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 34454432 33332 333335578999999998775 45567889999984 331 11222333445688999999
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA 698 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~ 698 (707)
+|.+.++....+.|.+| +..++.. +..+..+... +++++|. |++..|+.++.
T Consensus 209 ~G~lwva~~~~~~v~~~------d~~tG~~---~~~i~~p~~~----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRL------DPVTGKR---LQTVKLPVDK----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TSCEEEEEETTTEEEEE------CTTTCCE---EEEEECSSSB----EEEEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCEEEEE------cCCCceE---EEEEECCCCC----ceEEEEeCCCCCEEEEEcC
Confidence 99988888888899999 4444443 5566666544 9999998 88887765543
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.28 E-value=1.3e-08 Score=104.54 Aligned_cols=234 Identities=10% Similarity=-0.060 Sum_probs=161.2
Q ss_pred CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
...+.+|++.++| .++++. .++.|.+|+.. +. +..+.. .....
T Consensus 19 ~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~-------------------------~~~~~~--------~~~~~ 62 (300)
T 2qc5_A 19 DSGPYGITSSEDG--KVWFTQHKANKISSLDQS-GR-------------------------IKEFEV--------PTPDA 62 (300)
T ss_dssp TCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC-------------------------EEEEEC--------SSTTC
T ss_pred CCCcceeeECCCC--CEEEEcCCCCeEEEECCC-Cc-------------------------eEEEEC--------CCCCC
Confidence 4678999999998 466665 46888888865 21 111111 12235
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI 573 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~ 573 (707)
.+.++++.++|..+++...++ .|..++.. +......+ .....+.++++.+++.++++.. ++.|..||.. ++..
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~---~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGAN---KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTT---EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred cceeEEECCCCCEEEEecCCC---eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 688999999999777766555 89999987 44331233 3446789999999998777766 7899999987 6544
Q ss_pred EE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 574 KK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR-VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 574 ~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~-~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
.. +......+.+++++++|.++++...++.|..||. .+ .... .+..+...+.+++++++|.++++....+.|.+|+
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 22 2223456899999999996666666788999998 34 3222 2223445789999999999888777778899994
Q ss_pred cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
. .+... ...+..+... +.+++++++|.++++...++.|..|+
T Consensus 216 ------~-~g~~~--~~~~~~~~~~----~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 216 ------T-TGEIS--EYDIPTPNAR----PHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ------T-TCCEE--EEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred ------C-CCcEE--EEECCCCCCC----ceEEEECCCCCEEEeccCCCeEEEEC
Confidence 3 22210 1112223333 89999999998777766678888876
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.4e-09 Score=119.11 Aligned_cols=237 Identities=9% Similarity=0.035 Sum_probs=157.8
Q ss_pred CcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 418 EAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
....+|+|++++ .|+++.. ++.|++|++.++. +..+ ......
T Consensus 131 ~~P~~la~d~~g--~lyv~d~~~~~I~~id~~~g~-------------------------~~~~----------~~~~~~ 173 (409)
T 3hrp_A 131 KYMWGIAAVGNN--TVLAYQRDDPRVRLISVDDNK-------------------------VTTV----------HPGFKG 173 (409)
T ss_dssp CCEEEEEECSTT--EEEEEETTTTEEEEEETTTTE-------------------------EEEE----------EETCCB
T ss_pred CCceEEEEeCCC--CEEEEecCCCcEEEEECCCCE-------------------------EEEe----------eccCCC
Confidence 367899999998 4555554 5788888875431 1111 111223
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----c-cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----K-LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ 570 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~-~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~ 570 (707)
.. ++|+++|+.|+++..++ ...|.+++....... ..+ . ....+.+++++|++..|+++. ++.|+.||+.++
T Consensus 174 ~~-ia~~~~g~~l~~~d~~~-~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 174 GK-PAVTKDKQRVYSIGWEG-THTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp CB-CEECTTSSEEEEEBSST-TCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred Cc-eeEecCCCcEEEEecCC-CceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 34 99999999998888755 237888887765542 222 2 456778999999655566655 689999999877
Q ss_pred eEEEE----EeCCCCCe--EEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCC---------------CCEEE
Q 005235 571 RLIKK----LETGLKEV--SSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP---------------KDITN 628 (707)
Q Consensus 571 ~~~~~----l~~~~~~I--~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~---------------~~I~~ 628 (707)
..... ..++...- +.++|+|+ +.++++.+.+++|+.|+.+.. ...+.++. .....
T Consensus 251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 53322 11222222 39999995 555666667788999998632 44444432 34789
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCC-----------CCCCeeEEEEcCCCCEEEEE
Q 005235 629 VAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-----------NGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 629 vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~-----------~~~gV~~l~fspdg~~L~s~ 696 (707)
++|+|+|.++++-+ .++.|++|+. ..+. +..+.++... .-.....+++++++.++++-
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~------~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDI------LDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEET------TTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEEC------CCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 99999999888888 8899999953 2221 3444444100 00138899999998888888
Q ss_pred eCCCcEEEEeC
Q 005235 697 GADSVIRLYCH 707 (707)
Q Consensus 697 g~Dg~IrlWdl 707 (707)
..++.|+.+++
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 88899988763
No 205
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=4.2e-09 Score=111.37 Aligned_cols=221 Identities=11% Similarity=0.084 Sum_probs=146.5
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
...+++|+|++...+++...++.|..|++.++ .+..| .....+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-------------------------~~~~~-----------~~~~~v~ 93 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-------------------------RKTVH-----------ALPFMGS 93 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-------------------------EEEEE-----------ECSSCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-------------------------cEEEE-----------ECCCcce
Confidence 34678899986433444445778888887543 12222 2245789
Q ss_pred EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc-----CCCeEEEEEeCCCCEEEEEeC-------CeEEEEE
Q 005235 499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL-----HGLPVSSVFHPTRSIFFVSTK-------KNIRVYD 566 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~~V~~v~fspd~~~l~v~sd-------g~I~iwD 566 (707)
+++|+++|+++++. .. .|.+|+..++... ..... ...+.+++++|+|.++++..+ +.|..++
T Consensus 94 ~i~~~~dg~l~v~~--~~---gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 94 ALAKISDSKQLIAS--DD---GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp EEEEEETTEEEEEE--TT---EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred EEEEeCCCeEEEEE--CC---CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 99999999877765 23 6999999877653 22221 235789999999997665432 4566666
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECC--CC-C----cceEEeecCCCCEEEEEEcCCCCEE
Q 005235 567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMD--LS-S----KPYRVLKCHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~--~~-~----~~~~~l~~h~~~I~~vafspdg~ll 638 (707)
+++.. .+..+......++|+|+|+.|+++ +.++.|.+||++ ++ . +.+..+.........+++.++|.++
T Consensus 168 --~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 168 --KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp --TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred --CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 45543 333333457899999999877555 456889999986 33 1 1122233334567889999999988
Q ss_pred EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235 639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA 698 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~ 698 (707)
++...++.|.+|+ . ++.. +..+..+... +.+++|+ |++..|+.++.
T Consensus 245 va~~~~~~v~~~d------~-~g~~---~~~i~~~~~~----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 245 NARWGEGAVDRYD------T-DGNH---IARYEVPGKQ----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEETTTEEEEEC------T-TCCE---EEEEECSCSB----EEEEEEESTTSCEEEEEEB
T ss_pred EEEeCCCEEEEEC------C-CCCE---EEEEECCCCC----cEEEEEecCCCCEEEEEec
Confidence 8877778899994 3 2222 4555555444 9999998 89887755543
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=5.8e-09 Score=110.27 Aligned_cols=216 Identities=13% Similarity=0.029 Sum_probs=146.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
.+.+++++..++.|.+|+..+++.. .+.....|.+++|+|+| .+++++ ...|.+|++.++...
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg--~l~v~~-~~gl~~~d~~~g~~~------------- 122 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS--KQLIAS-DDGLFLRDTATGVLT------------- 122 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT--EEEEEE-TTEEEEEETTTCCEE-------------
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC--eEEEEE-CCCEEEEECCCCcEE-------------
Confidence 3457888888899999999887653 45556789999999999 466655 456888987654221
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceeeeee-ccCCCe
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
.+..... ......+.+++++++|+++++..... ....|..++ .+.. ..+ ......
T Consensus 123 ------------~~~~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~~~~~ 181 (326)
T 2ghs_A 123 ------------LHAELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLFADISIP 181 (326)
T ss_dssp ------------EEECSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEEEEESSE
T ss_pred ------------EEeeCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEeeCCCccc
Confidence 1100000 01123578899999999776654210 123566666 3433 333 444567
Q ss_pred EEEEEeCCCCEEEEEe--CCeEEEEECC--CC-e-----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 543 VSSVFHPTRSIFFVST--KKNIRVYDLL--KQ-R-----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s--dg~I~iwDl~--~~-~-----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
..++|+|+++.|+++. ++.|.+||+. ++ . .+..+......+.+++++++|.+.++...++.|.+||.. +
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g 260 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G 260 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C
Confidence 8999999999887765 6899999986 55 2 222332233557899999999877777677899999984 4
Q ss_pred CcceEEeecCCCCEEEEEEc-CCCCEEEEEe
Q 005235 613 SKPYRVLKCHPKDITNVAFH-RSYPLFASCS 642 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafs-pdg~llaSgs 642 (707)
+.+..+..+...+++++|+ +++..|+.++
T Consensus 261 -~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 261 -NHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp -CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred -CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 5667777777789999998 8877554444
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=4.1e-11 Score=129.60 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=131.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---------eee-eeeccCCCeEEEEEeCCCCEEEEEeCCeEEEE
Q 005235 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---------SHR-IPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVY 565 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---------~~~-~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iw 565 (707)
.+..+++++...+|++|+.+ .+.+|++.... ... ..+...+ |..++| ++.+|+++.++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~----~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS----KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT----EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC----EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEE
Confidence 68999999999999999986 47779865433 111 1225556 999999 8999999999999999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg 645 (707)
|+.+......+..+...+.++.+.+. .+++++.||.|.+||+..+. ... +...|++++|||+| ++.|..||
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 99876555566667777888777654 49999999999999998663 322 34689999999999 67899999
Q ss_pred cEEEEecccccCCCCCCcccceEEe------e---CCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEIL------R---GHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l------~---gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
+|++|+... ... ...+++ . +|... |.+|.|.+++.+|++-+
T Consensus 183 ~i~~~~~~~------~~~-~~k~~I~~Pp~~~~~~~~~~~----V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 183 SFQSFAWRN------GEM-EKQFEFSLPSELEELPVEEYS----PLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CEEEEEEET------TEE-EEEEEECCCHHHHTSCTTTSE----EEEEEESSSSEEEEEEE
T ss_pred cEEEEcCCC------ccc-cccceecCCcccccccCCCee----EEEEEEecCCeEEEEEc
Confidence 999995421 110 001223 2 35544 99999999999998744
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=9.8e-10 Score=120.35 Aligned_cols=262 Identities=11% Similarity=0.027 Sum_probs=166.4
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
++|.+.|..+++.+.++.....- .++++||+. .++++. .++.|.++|+.+....
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv-------------- 162 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPI-------------- 162 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--------------
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEE--------------
Confidence 79999999999999999985444 999999994 566655 3568888887765321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF 547 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f 547 (707)
....+.+.. ..........++|+|+|++++++.... .+.|.+.|+.+.+.. ..+...+ +...
T Consensus 163 ----------~~I~v~g~~---r~~~g~~P~~~~~spDGk~lyV~n~~~-~~~VsVID~~t~kvv-~~I~v~g---~~~~ 224 (426)
T 3c75_H 163 ----------ADIELPDAP---RFLVGTYQWMNALTPDNKNLLFYQFSP-APAVGVVDLEGKTFD-RMLDVPD---CYHI 224 (426)
T ss_dssp ----------EEEEETTCC---CCCBSCCGGGSEECTTSSEEEEEECSS-SCEEEEEETTTTEEE-EEEECCS---EEEE
T ss_pred ----------EEEECCCcc---ccccCCCcceEEEcCCCCEEEEEecCC-CCeEEEEECCCCeEE-EEEEcCC---ceee
Confidence 000000000 000123456789999999999887431 238999999998876 5563222 1334
Q ss_pred eCCC-CEEEEEe-CCeEEEEECCCCeEEEEE----eCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEe
Q 005235 548 HPTR-SIFFVST-KKNIRVYDLLKQRLIKKL----ETGLKEV-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVL 619 (707)
Q Consensus 548 spd~-~~l~v~s-dg~I~iwDl~~~~~~~~l----~~~~~~I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l 619 (707)
.|++ ..+++.+ ||.+.+.++.+++..... .....++ ..+.+.+++..++..+..+.|.+.|+..... ....+
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence 4443 3334444 888888888666554322 1122221 2357799999888888899999999964421 01111
Q ss_pred ec----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235 620 KC----------HPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679 (707)
Q Consensus 620 ~~----------h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~ 679 (707)
.- .......++|+|++..++.+.. .+.|.|+| +.+... +..+.....
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID------~~T~kv---v~~I~vg~~---- 371 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN------AETGER---INKIELGHE---- 371 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE------TTTCCE---EEEEEEEEE----
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE------CCCCeE---EEEEECCCC----
Confidence 10 0111223689999886555432 34799994 445544 444433222
Q ss_pred CeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235 680 GVMDCKFHPRQP-WLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 680 gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl 707 (707)
..+++|+|+++ .|+++. .++.|.++|+
T Consensus 372 -P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 372 -IDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp -ECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred -cCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 78999999999 888888 5999999984
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=3.4e-09 Score=114.29 Aligned_cols=273 Identities=13% Similarity=0.039 Sum_probs=166.5
Q ss_pred CCCcEEEEEeC-----CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCC
Q 005235 386 VACYLEYKGST-----DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLG 450 (707)
Q Consensus 386 ~~~~~l~sgs~-----DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~ 450 (707)
.++..+|.... ++.|.+.|..+++.+.++....... ++++|||. .++++. .++.|.+||+.+.
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCC
Confidence 34456666544 6899999999999999998844445 99999994 566554 2567888887765
Q ss_pred CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL 530 (707)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~ 530 (707)
... ..+....+. ..........++|+|+|++++++.... .+.|.++|+.+++
T Consensus 120 ~v~------------------------~~I~v~~g~---r~~~g~~P~~~a~spDGk~lyVan~~~-~~~VsVID~~t~~ 171 (386)
T 3sjl_D 120 LPT------------------------ADIELPDAP---RFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGKA 171 (386)
T ss_dssp CEE------------------------EEEEETTCC---CCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTTE
T ss_pred eEE------------------------EEEECCCcc---ccccCCCCceEEEcCCCCEEEEEEcCC-CCeEEEEECCCCc
Confidence 321 111000000 000123456799999999998886421 2399999999998
Q ss_pred eeeeeeccCCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCC-CeEEEEEeCC----CCCeE-EEEE-cCCCCEEEEEECC
Q 005235 531 SHRIPFKLHGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLK-QRLIKKLETG----LKEVS-SIAI-HPAGDNLIVGSRE 601 (707)
Q Consensus 531 ~~~~~~~~~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~----~~~I~-sl~~-spdg~~L~sGs~D 601 (707)
.. ..+...+ |..+.|. ...+++.+ ||.+.+.++.+ ++...+.... ...+. ...| .++|++++ .+.+
T Consensus 172 vv-~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~ 246 (386)
T 3sjl_D 172 FK-RMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT 246 (386)
T ss_dssp EE-EEEECCS---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred EE-EEEECCC---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence 77 6663222 1222343 34444444 88888888876 5543322111 12221 2355 36775444 6678
Q ss_pred CcEEEEECCCCC-cceEEee----------cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCC
Q 005235 602 GKLCWFDMDLSS-KPYRVLK----------CHPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQ 660 (707)
Q Consensus 602 g~I~vwDl~~~~-~~~~~l~----------~h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~ 660 (707)
|+|+++|+.... .....+. -....+..+++++++..++.+.. ...|.++ |+.+
T Consensus 247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi------D~~t 320 (386)
T 3sjl_D 247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL------DAKT 320 (386)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE------ETTT
T ss_pred CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE------ECCC
Confidence 999999997542 1222221 01123345788999887766542 2468888 5555
Q ss_pred CCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEE-eCCCcEEEEeC
Q 005235 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTA-GADSVIRLYCH 707 (707)
Q Consensus 661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~-g~Dg~IrlWdl 707 (707)
... ++.+.... .+.+|+|++|++ .|+++ ..++.|.++|.
T Consensus 321 ~kv---~~~i~vg~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 321 GER---LAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CCE---EEEEEEEE-----EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred CeE---EEEEECCC-----CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 554 34433221 188999999996 67665 55899999884
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=2.3e-10 Score=123.76 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=131.1
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~ 498 (707)
.++.+++++.. .+++++....+.+|++.......... .+. -.......+.+ |+
T Consensus 39 ~~nlLais~~~--gll~a~~~~~l~v~~~~~l~~~~~~~----------------~~~--------~~~~~~~~lp~-V~ 91 (388)
T 1xip_A 39 SLQNLDISNSK--SLFVAASGSKAVVGELQLLRDHITSD----------------STP--------LTFKWEKEIPD-VI 91 (388)
T ss_dssp CCBCEEEETTT--TEEEEEETTEEEEEEHHHHHHHHHSS----------------SCC--------CCCSEEEECTT-EE
T ss_pred cccEEEEcCCC--CEEEEeCCCEEEEEEhhHhhhhhccc----------------ccc--------ccceEEeeCCC-ee
Confidence 68899999998 46666666688889865432111100 000 00112335667 99
Q ss_pred EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235 499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l 576 (707)
+|+| ++++|+++ .++ .|++||+...... ..+ .+...+.++.+.+.. +++++ ||.|.+||+.++.... +
T Consensus 92 ~l~f--d~~~L~v~-~~~---~l~v~dv~sl~~~-~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~ 161 (388)
T 1xip_A 92 FVCF--HGDQVLVS-TRN---ALYSLDLEELSEF-RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L 161 (388)
T ss_dssp EEEE--ETTEEEEE-ESS---EEEEEESSSTTCE-EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E
T ss_pred EEEE--CCCEEEEE-cCC---cEEEEEchhhhcc-CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c
Confidence 9999 99999998 556 9999999877654 445 666678887776543 66655 9999999999887653 2
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc--eEEe------e---cCCCCEEEEEEcCCCCEEEEEe
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP--YRVL------K---CHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~--~~~l------~---~h~~~I~~vafspdg~llaSgs 642 (707)
...|+|++|||+| +++|..||++.+|+.+.. .. .+++ . +|...|.+|.|.+++.+|++-+
T Consensus 162 ---~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 162 ---AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ---EESEEEEEECSSE--EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ---cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 3579999999999 788999999999998765 32 4455 2 4788899999999999888643
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=7e-09 Score=113.50 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=153.2
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeee
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
++.++++...++.|++||..++............. ++|+|+++ .|+++..++ .|.+|+...+..
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~------------ 206 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWA------------ 206 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTC------------
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCce------------
Confidence 44577777778999999999888776665544444 99999994 566666544 777777543211
Q ss_pred cccccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee----e-cc
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F-KL 538 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~-~~ 538 (707)
.... ..... ....+.+++++|++..|+++..++ .|..|+..+.... .. . ..
T Consensus 207 ------------~~~~-------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~---~I~~~d~~~~~~~-~~~~~~~~g~ 263 (409)
T 3hrp_A 207 ------------PTRI-------GQLGSTFSGKIGAVALDETEEWLYFVDSNK---NFGRFNVKTQEVT-LIKQLELSGS 263 (409)
T ss_dssp ------------EEEE-------EECCTTSCSCCCBCEECTTSSEEEEECTTC---EEEEEETTTCCEE-EEEECCCCSC
T ss_pred ------------eEEe-------eeccchhcCCcEEEEEeCCCCeEEEEECCC---cEEEEECCCCCEE-EEecccccCC
Confidence 0000 00112 345678899999555565565555 9999999877643 22 2 22
Q ss_pred CCCe-E-EEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---------------CCeEEEEEcCCCCEEEEEE
Q 005235 539 HGLP-V-SSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---------------KEVSSIAIHPAGDNLIVGS 599 (707)
Q Consensus 539 ~~~V-~-~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---------------~~I~sl~~spdg~~L~sGs 599 (707)
.+.. . .++|+|++..|+++. .+.|+.|+.... +..+.++. .....|+++|+|.++++-+
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 2222 3 999999766666655 689999997644 33333321 4588999999999778777
Q ss_pred -CCCcEEEEECCCCCcceEEeecC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 600 -REGKLCWFDMDLSSKPYRVLKCH---------------PKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 600 -~Dg~I~vwDl~~~~~~~~~l~~h---------------~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
.+++|+.||+..+ . +.++.++ -.....|++++++.++++-..++.|+.+.
T Consensus 342 ~~~~~I~~~~~~~G-~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 342 FKGYCLRKLDILDG-Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTTCEEEEEETTTT-E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCCEEEEEECCCC-E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 8899999997655 3 4555554 23588999999998888888888888773
No 212
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.22 E-value=7e-10 Score=114.78 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC-CCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCC-C
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH-GLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGL-K 581 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~-~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~-~ 581 (707)
.++.|++++.++ .|.+||..+++.. ..+ .+. ..+.+++++|+|++|+ +.++.|..||. +++.+.++..+. .
T Consensus 4 ~~~~lv~~~~~~---~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWN---KIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCS---EEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCC---EEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 467888888877 9999999899887 777 333 4789999999999888 55788999999 899999998753 4
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcceEEeec------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 582 EVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKPYRVLKC------HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 582 ~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~------h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
.+.++.+.|+|++|++.+. +++|..+|.+ + +.+..+.. +......+++.++|.++++.+.++.|.+|
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~---- 151 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI---- 151 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE----
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE----
Confidence 6889999999999999887 7788888863 4 55555542 11245567889999999999999999999
Q ss_pred ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
|.. +.. +..+..+.. +.++.+.+++..|++++.++.|..+|
T Consensus 152 --d~~-G~~---~w~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 152 --APN-GQL---LNSVKLSGT-----PFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp --CTT-SCE---EEEEECSSC-----CCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred --CCC-CCE---EEEEECCCC-----ccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 443 333 555555432 67788899999999988888888776
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=3.5e-09 Score=110.59 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=149.1
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.....+++|+|+++..+++...++.|..|+.. + .+.. +..+...
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-------------------------~~~~----------~~~~~~~ 87 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-------------------------TVDV----------LLDATAF 87 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-------------------------CEEE----------EEESCSC
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-------------------------CEEE----------EeCCCCc
Confidence 55678899999994234444456788888752 2 1111 2234567
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c----cCCCeEEEEEeCCCCEEEE----Ee---------
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K----LHGLPVSSVFHPTRSIFFV----ST--------- 558 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~----~~~~V~~v~fspd~~~l~v----~s--------- 558 (707)
+..++++++|+++++...++ .|.+|+.. +... ... . ....+..++++|+|.++++ ++
T Consensus 88 ~~gl~~d~dG~l~v~~~~~~---~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHCEHGRR---AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp EEEEEECTTSCEEEEETTTT---EEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred cceeeECCCCCEEEEECCCC---EEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 88999999999766655444 89999986 4332 111 1 1235678999999998875 32
Q ss_pred -----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEECCCCCcce--EEe-ecCCC
Q 005235 559 -----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE------GKLCWFDMDLSSKPY--RVL-KCHPK 624 (707)
Q Consensus 559 -----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~~~~~--~~l-~~h~~ 624 (707)
.+.|..||..+++..... +......++|+|+|+.|+++... +.|.+|++.... .. ..+ .....
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 256888888666544333 33567899999999988877665 689999987542 11 111 11233
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
....+++.++|++.++. .+| |.+|+ . .+. .+..+..+. . +.+++|+|++..|+.++.++..++
T Consensus 240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~------~-~g~---~~~~~~~~~-~----~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-GTG-VCVFD------S-DGQ---LLGHIPTPG-T----ASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CCCSEEECTTSCEEECC-SSE-EEEEC------T-TSC---EEEEEECSS-C----CCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCeEEECCCCCEEEec-CCc-EEEEC------C-CCC---EEEEEECCC-c----eeEEEEeCCCCEEEEEcCCeEEEE
Confidence 45678999999966554 444 88994 3 222 244555443 2 899999999999988887765554
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.18 E-value=1.7e-09 Score=127.63 Aligned_cols=198 Identities=9% Similarity=-0.036 Sum_probs=134.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CC----------
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KK---------- 560 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg---------- 560 (707)
...+..++|||+|++||.++.+++. ..|++||+.++......+ ....+..++|+|+ +.|+.++ ++
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 3467899999999999988765433 579999999987652222 1222357899999 8888776 43
Q ss_pred ----eEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcc-eEEeecCCCCE
Q 005235 561 ----NIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKP-YRVLKCHPKDI 626 (707)
Q Consensus 561 ----~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~-~~~l~~h~~~I 626 (707)
.|++|++.++. ++.....+...+.++.|||+|++|++.+.++ .|++||+.++... ...+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 38999998764 3322222333689999999999998887654 7999999865223 56666666666
Q ss_pred EEEEEcCCCCEEEEEeCC----CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 627 TNVAFHRSYPLFASCSDD----CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 627 ~~vafspdg~llaSgs~D----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
.... +|+|..|+..+.+ +.|.+|++. +.. ......+..+... +.+++|+ ++.++++...|+..
T Consensus 320 ~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~------~~~-~~~~~l~~~~~~~----l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 320 WDFV-DGVGDQLWFVSGDGAPLKKIVRVDLS------GST-PRFDTVVPESKDN----LESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEEE-EEETTEEEEEECTTCTTCEEEEEECS------SSS-CEEEEEECCCSSE----EEEEEEE-BTEEEEEEEETTEE
T ss_pred EEEE-eccCCEEEEEECCCCCCCEEEEEeCC------CCc-cccEEEecCCCCe----EEEEEEE-CCEEEEEEEECCEE
Confidence 6554 4889988877764 348888543 211 0112233334333 6778887 56678888999998
Q ss_pred EEEe
Q 005235 703 RLYC 706 (707)
Q Consensus 703 rlWd 706 (707)
+||.
T Consensus 387 ~l~~ 390 (741)
T 1yr2_A 387 QVLA 390 (741)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.12 E-value=4.9e-09 Score=122.71 Aligned_cols=192 Identities=14% Similarity=0.175 Sum_probs=127.5
Q ss_pred EEEEEcCCCCEEEEEeCCC----------CccEEEEEECCCCceee-eeec----cCCCeEEEEEeCCCCEEEEEe----
Q 005235 498 SSVEWHRRGDYLSTVMPAG----------ESRAIFMHQLSKKLSHR-IPFK----LHGLPVSSVFHPTRSIFFVST---- 558 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg----------~~~~V~Iwdl~~~~~~~-~~~~----~~~~V~~v~fspd~~~l~v~s---- 558 (707)
..++|+ ||+.|+.++.+. ....|.+|++.+..... ..+. +...+..+.|+|+|++|+...
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 567899 999999998773 23579999998876431 2232 234578899999999887643
Q ss_pred -CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C---CcEEEEECCCCCc-ceEEeecCCCCEEEEEE
Q 005235 559 -KKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSR-E---GKLCWFDMDLSSK-PYRVLKCHPKDITNVAF 631 (707)
Q Consensus 559 -dg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D---g~I~vwDl~~~~~-~~~~l~~h~~~I~~vaf 631 (707)
...|+++|+.++. ....+..+....... ++++|..|+..+. + +.|..+|+..+.. ..+.+..|...+. .|
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence 2589999998763 345666665655555 6667766655543 3 5799999987532 2456777776665 89
Q ss_pred cCCCCEEEEEe-CCC--cEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCC----CcEE
Q 005235 632 HRSYPLFASCS-DDC--TAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGAD----SVIR 703 (707)
Q Consensus 632 spdg~llaSgs-~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~D----g~Ir 703 (707)
++++..|+... .++ .|++|+ +.... ...+.. +... +..+.++|++..|+....+ ++|.
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d------~~g~~----~~~l~~p~~~~----~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFD------YEGKR----VREVALPGLGS----VSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEEC------TTSCE----EEEECCSSSSE----EEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred EEECCEEEEEEEECCeeEEEEEE------CCCCe----eEEeecCCCce----EEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 99998776655 454 577774 33221 233322 2222 7778888888876555444 7788
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
.||+
T Consensus 400 ~~d~ 403 (693)
T 3iuj_A 400 RFEP 403 (693)
T ss_dssp EECT
T ss_pred EEEC
Confidence 8774
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=8.7e-08 Score=102.75 Aligned_cols=288 Identities=11% Similarity=0.051 Sum_probs=176.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecC----------CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG----------EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~----------~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~ 457 (707)
...++.++.++.|..+|..+|+.+..+... ..+.+.....++ .+++++.++.|..+|..++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG--HVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC--EEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 357888889999999999999998877762 233333233344 68888889999999999886532211
Q ss_pred cc-ceeee----cccccccCCCCcEEEEecCCccceEEeccCCCe------EEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235 458 VK-DLLHV----ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV------SSVEWHRRGDYLSTVMPAGESRAIFMHQL 526 (707)
Q Consensus 458 ~~-~v~~~----~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V------~~v~~sp~g~~lat~s~dg~~~~V~Iwdl 526 (707)
.. .+... .-.+..+..++.+..++..++...-.......+ ...... +..+++++.++ .|..+|.
T Consensus 131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g---~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNG---RVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTT---EEEEEET
T ss_pred CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCC---EEEEEEC
Confidence 11 11100 001455667888888888766543322222221 112222 45677777766 9999999
Q ss_pred CCCceeeeeeccCCC-----------e-EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235 527 SKKLSHRIPFKLHGL-----------P-VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD 593 (707)
Q Consensus 527 ~~~~~~~~~~~~~~~-----------V-~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~ 593 (707)
.+++.. ..+..... + ....+ .+..+++++ ++.|..+|+.+++.+...... ...++.. ++.
T Consensus 206 ~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~ 278 (376)
T 3q7m_A 206 EQGQMI-WQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGN 278 (376)
T ss_dssp TTCCEE-EEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETT
T ss_pred CCCcEE-EEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECC
Confidence 888765 44311100 1 11111 245566666 899999999999888776533 3455555 367
Q ss_pred EEEEEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235 594 NLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG 672 (707)
Q Consensus 594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g 672 (707)
.|++++.++.|..+|..++ +...... .....+..... .+..|+.++.+|.|.++|. .++.. +.....
T Consensus 279 ~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~------~tG~~---~~~~~~ 346 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV------EDGRF---VAQQKV 346 (376)
T ss_dssp EEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET------TTCCE---EEEEEC
T ss_pred EEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC------CCCcE---EEEEec
Confidence 8888999999999999988 4443333 12222233333 2467888889999999954 34433 333332
Q ss_pred CCCCCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 673 HTSSNGRGV-MDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 673 h~~~~~~gV-~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
.... + ..+.. .+..|+.++.+|.|..|+.
T Consensus 347 ~~~~----~~~~~~~--~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 347 DSSG----FQTEPVA--ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CTTC----BCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred CCCc----ceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence 1111 2 12222 2457888999999999873
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=1.1e-07 Score=102.69 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=141.2
Q ss_pred CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhc-ccccceeee
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQ-RRVKDLLHV 464 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~-~~~~~v~~~ 464 (707)
.+++|.+||..+++.+..+... .....++|+|||. .|+++.. ++.|.++| .++..... .........
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~ 172 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI 172 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence 4788999999999988877653 2356899999994 6666653 47899999 87754211 111111100
Q ss_pred -ccc---ccccCCCCcEEEEecCCccceEEe------ccCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 465 -ETP---TAPDDNMASIVSWLQHDKLDGIRL------RHFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 465 -~~~---~~~~~~d~~i~iW~~~~~~~~~~~------~h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
... ++..+.++.+..++. ........ ....+ .....+.+++..++..+..+ .+.+.|+.......
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~v~vid~~~~~~~v 248 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG---KILQADISAAGATN 248 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc---eEEEEeccCCcceE
Confidence 000 344556788888887 44332111 11111 12345666666655555555 89999987543210
Q ss_pred -eeec-----------cCCCeEEEEEeCCCCEEEEEeC-----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235 534 -IPFK-----------LHGLPVSSVFHPTRSIFFVSTK-----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590 (707)
Q Consensus 534 -~~~~-----------~~~~V~~v~fspd~~~l~v~sd-----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp 590 (707)
..+. .......++|+|++..++++.+ +.|.++|+.+++.+.++..+ ....+++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~ 327 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQ 327 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECC
Confidence 1221 1233455889999999888642 47999999999999999765 4689999999
Q ss_pred CCC-EEEEEE-CCCcEEEEECCCCCcceEE
Q 005235 591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRV 618 (707)
Q Consensus 591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~ 618 (707)
+|+ +++++. .++.|.++|+.++ +.++.
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 999 777777 4899999999987 55655
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=9.4e-09 Score=120.28 Aligned_cols=229 Identities=12% Similarity=0.091 Sum_probs=138.0
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
+...+|+|||+.+|+.+..........+++|+ |++ .|+.++.+.. ..+.. ......
T Consensus 152 ~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~------~~~~~----------------~~~~~~ 207 (693)
T 3iuj_A 152 SDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNE-GFFYSSYDKP------DGSEL----------------SARTDQ 207 (693)
T ss_dssp CCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTT-EEEEEESSCC------C-----------------------CCC
T ss_pred CceEEEEEEECCCCCCCccccCCceeccEEEe-CCC-EEEEEEecCc------ccccc----------------cccCCC
Confidence 34467999999999876532111113578999 984 5766666532 00000 000011
Q ss_pred CcEEEEecCCccc--eEE---ec-cCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235 475 ASIVSWLQHDKLD--GIR---LR-HFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV 546 (707)
Q Consensus 475 ~~i~iW~~~~~~~--~~~---~~-h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~ 546 (707)
..|.+|++.+... ..+ .. |...+..+.|+|+|++|+.....+ ..+.|.++++.++......+ .+.......
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~- 286 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL- 286 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence 2334444432221 111 12 344578899999999886655433 33599999998764221455 555555555
Q ss_pred EeCCCCEEEEEe--C---CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcce
Q 005235 547 FHPTRSIFFVST--K---KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPY 616 (707)
Q Consensus 547 fspd~~~l~v~s--d---g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~ 616 (707)
|++++..|+..+ + +.|.++|+.++.. .+.+..+...+. .|++++++|+....++ .|.+||+..+ ..
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~ 362 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RV 362 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--ee
Confidence 566666655544 2 6799999987643 345666666554 8899999888776544 6889998743 34
Q ss_pred EEee-cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEec
Q 005235 617 RVLK-CHPKDITNVAFHRSYPLFASCSDD----CTAYVFHG 652 (707)
Q Consensus 617 ~~l~-~h~~~I~~vafspdg~llaSgs~D----g~I~Vwd~ 652 (707)
..+. .+...+..+.+++++..|+....+ ++|..|++
T Consensus 363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 4443 244567788888888755544433 78888854
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.05 E-value=1.4e-08 Score=109.36 Aligned_cols=231 Identities=13% Similarity=0.074 Sum_probs=152.0
Q ss_pred CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhccccc---cee
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVK---DLL 462 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~---~v~ 462 (707)
.+++|.+||..+++.+.++... .....++|+|||. .++++.. ++.|.++|+.+....-.-... .+.
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~ 185 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 185 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceee
Confidence 4678999999999999988753 2567899999994 5666653 689999999887542111111 111
Q ss_pred eeccc-ccccCCCCcEEEEecCC-ccceEEe-ccC----CCe-EEEEEc-CCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 463 HVETP-TAPDDNMASIVSWLQHD-KLDGIRL-RHF----KMV-SSVEWH-RRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 463 ~~~~~-~~~~~~d~~i~iW~~~~-~~~~~~~-~h~----~~V-~~v~~s-p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
..... ++..+.||.+...+... ....... .+. ..+ ....|. ++|+++ ..+.+| .|.+.|+.+.....
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g---~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTG---KIHQIDLSSGDAKF 261 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTS---EEEEEECTTSSCEE
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE-EEeCCC---EEEEEECCCCccee
Confidence 11111 34556788888888764 3331111 111 112 124664 566544 456566 99999997664220
Q ss_pred -eeec-----------cCCCeEEEEEeCCCCEEEEEe-C----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235 534 -IPFK-----------LHGLPVSSVFHPTRSIFFVST-K----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590 (707)
Q Consensus 534 -~~~~-----------~~~~V~~v~fspd~~~l~v~s-d----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp 590 (707)
.++. ..+..+.+++++++..++++. + +.|.++|+.+++.++++..+ ..+.+|+++|
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~ 340 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ 340 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC
Confidence 1111 123456688899999999874 1 57999999999999998765 4688999999
Q ss_pred CCC-EEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC
Q 005235 591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS 634 (707)
Q Consensus 591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd 634 (707)
+|+ +|+++. .++.|.++|..++ +.++++..- ..-+.+.+++|
T Consensus 341 D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC-CSSCCEEEECC
T ss_pred CCCeEEEEEcCCCCeEEEEECCCC-cEEEEecCC-CCCceeEECCc
Confidence 996 666654 4899999999987 777777633 22344566655
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.05 E-value=2.2e-08 Score=104.51 Aligned_cols=217 Identities=13% Similarity=0.109 Sum_probs=143.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeC-CeEEEEECCCCCchhcccccceeeecc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG-QDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d-~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
.+++++..++.|..|+. +|.. ..+.. ...+.+++++++| .++++... +.|.+|+.. +.
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG--~l~v~~~~~~~v~~~~~~-g~--------------- 117 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQ--RLVHCEHGRRAITRSDAD-GQ--------------- 117 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC---------------
T ss_pred EEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCC--CEEEEECCCCEEEEECCC-CC---------------
Confidence 47888888999999998 5653 33433 6779999999999 46666644 688888854 21
Q ss_pred cccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEE----EeCC----------CCccEEEEEECCCCce
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLST----VMPA----------GESRAIFMHQLSKKLS 531 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat----~s~d----------g~~~~V~Iwdl~~~~~ 531 (707)
+..+.. ... .....+..++++++|..+++ +... .....|..++..++..
T Consensus 118 ----------~~~~~~------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~ 181 (305)
T 3dr2_A 118 ----------AHLLVG------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL 181 (305)
T ss_dssp ----------EEEEEC------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred ----------EEEEEe------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence 111100 000 11235678999999998886 2211 0123688888766654
Q ss_pred eeeeeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEECCCCeEE--EEEe-CCCCCeEEEEEcCCCCEEEEEECC
Q 005235 532 HRIPFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYDLLKQRLI--KKLE-TGLKEVSSIAIHPAGDNLIVGSRE 601 (707)
Q Consensus 532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwDl~~~~~~--~~l~-~~~~~I~sl~~spdg~~L~sGs~D 601 (707)
. ... .......++|+|++..|+++. . +.|.+|++..+.+. ..+. .....+..++++++|++ .+++.+
T Consensus 182 ~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~ 258 (305)
T 3dr2_A 182 Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT 258 (305)
T ss_dssp E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS
T ss_pred E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC
Confidence 4 222 344567899999999888775 4 68999998765421 1121 12344567899999984 444444
Q ss_pred CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235 602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY 648 (707)
Q Consensus 602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~ 648 (707)
.|.+|+.+ + +.+..+..+. .+.+++|++++..|..++.++..+
T Consensus 259 -gv~~~~~~-g-~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 259 -GVCVFDSD-G-QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -EEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -cEEEECCC-C-CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 49999984 3 5666666555 588999999998887777665433
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.02 E-value=7.8e-09 Score=111.24 Aligned_cols=262 Identities=8% Similarity=-0.128 Sum_probs=157.0
Q ss_pred EEEEEeCCC----cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCchhc
Q 005235 390 LEYKGSTDG----TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 390 ~l~sgs~Dg----tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~~~ 455 (707)
.+++...++ +|.+.|..+++.+.++.....- .++++||+. .++++. .++.|.+||+.++...
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-- 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPI-- 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEE--
Confidence 444444455 8889999999999999884444 899999994 566665 3578888888765321
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEE--EECCCCceee
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFM--HQLSKKLSHR 533 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~I--wdl~~~~~~~ 533 (707)
....+..... . ........++++|+|++++++.... ...|.+ +|+.+ .
T Consensus 110 ----------------------~~I~v~~~~~-~--~~g~~P~~ia~SpDGk~lyVan~~~-~~~v~V~~iD~~t---v- 159 (368)
T 1mda_H 110 ----------------------ADIELPDAPR-F--SVGPRVHIIGNCASSACLLFFLFGS-SAAAGLSVPGASD---D- 159 (368)
T ss_dssp ----------------------EEEEETTSCS-C--CBSCCTTSEEECTTSSCEEEEECSS-SCEEEEEETTTEE---E-
T ss_pred ----------------------EEEECCCccc-c--ccCCCcceEEEcCCCCEEEEEccCC-CCeEEEEEEchhh---c-
Confidence 0000000000 0 0013456899999999999887531 237888 88877 2
Q ss_pred eeeccCCCeEEEEEeCCCCEEEEE--eCCeEEEEECCC-----CeEEE----EEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235 534 IPFKLHGLPVSSVFHPTRSIFFVS--TKKNIRVYDLLK-----QRLIK----KLETGLKEVSSIAIHPAGDNLIVGSREG 602 (707)
Q Consensus 534 ~~~~~~~~V~~v~fspd~~~l~v~--sdg~I~iwDl~~-----~~~~~----~l~~~~~~I~sl~~spdg~~L~sGs~Dg 602 (707)
..+...+. +.+.|++...+++ .|+.+.+.|+.+ ++.+. .+..+..+. + ++++..++..+. +
T Consensus 160 ~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~ 231 (368)
T 1mda_H 160 QLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-S 231 (368)
T ss_dssp EEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-S
T ss_pred eEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-C
Confidence 33321111 2234555433332 378888889886 43321 112223333 3 666777777777 9
Q ss_pred cEEEEECCCCC-cceEEeec-------C---CCCEEEEEEcCCCCEEEEEeC---------CCcEEEEecccccCCCCCC
Q 005235 603 KLCWFDMDLSS-KPYRVLKC-------H---PKDITNVAFHRSYPLFASCSD---------DCTAYVFHGMVYSDLNQNP 662 (707)
Q Consensus 603 ~I~vwDl~~~~-~~~~~l~~-------h---~~~I~~vafspdg~llaSgs~---------Dg~I~Vwd~~~~~Dl~~~~ 662 (707)
.|.+.|+.... .....+.. + ......++|+|++..++.+.. ++.+.|+| +.+..
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD------~~t~~ 305 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT------ASVGQ 305 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE------SSSCC
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE------CCCCe
Confidence 99999996432 11221211 0 011122689999987665432 23566994 44554
Q ss_pred cccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl 707 (707)
. +..+..... ...++|+|+|+ .+++.. .+++|.++|+
T Consensus 306 v---v~~i~vg~~-----p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 306 T---SGPISNGHD-----SDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp E---EECCEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred E---EEEEECCCC-----cceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 4 344433322 78999999998 456666 5999999985
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=8.5e-09 Score=107.86 Aligned_cols=285 Identities=9% Similarity=0.001 Sum_probs=180.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-cccee---
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-VKDLL--- 462 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-~~~v~--- 462 (707)
...++.|+.++.|..|| .+|+.+..+.. ...+.++...+++ .+++++.+ |..+|. ++....... .....
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 34677778889999999 88988765554 3455778888887 46655544 888885 433211111 11100
Q ss_pred eecc-cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235 463 HVET-PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG 540 (707)
Q Consensus 463 ~~~~-~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~ 540 (707)
.+.- .+..++.++.+..++..+............+.++...++|. +..++.++ .|..++.. +... ..+ ....
T Consensus 104 ~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~---~l~~~d~~-g~~~-~~~~~~~~ 177 (330)
T 3hxj_A 104 TIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDN---YLYAINPD-GTEK-WRFKTNDA 177 (330)
T ss_dssp EEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTS---EEEEECTT-SCEE-EEEECSSC
T ss_pred eEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCC---EEEEECCC-CCEe-EEEecCCC
Confidence 0011 14556667788888877332222333444566777777777 44456556 89999988 6554 444 3345
Q ss_pred CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235 541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
.+.++.+.+++.++ +++ +.|..|| .+++.+..+......+.++.+.++| .|.+|+.++.|..+|.. + ..+..+.
T Consensus 178 ~~~~~~~d~~g~l~-v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~-g-~~~~~~~ 251 (330)
T 3hxj_A 178 ITSAASIGKDGTIY-FGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINPD-G-TEKWRFK 251 (330)
T ss_dssp CCSCCEECTTCCEE-EES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECTT-S-CEEEEEE
T ss_pred ceeeeEEcCCCEEE-EEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEECCC-C-CEeEEee
Confidence 56777787777754 445 8999999 7777777776666678889998887 45667778889888753 3 4445555
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
.....+.++.+.+++. |..++.+|.|..++ . ++.. +..+...... +.++...+++. |+.++.+|
T Consensus 252 ~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d------~-~g~~---~~~~~~~~~~----~~~~~~d~~g~-l~~gt~~G 315 (330)
T 3hxj_A 252 TGKRIESSPVIGNTDT-IYFGSYDGHLYAIN------P-DGTE---KWNFETGSWI----IATPVIDENGT-IYFGTRNG 315 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTCEEEEEC------T-TSCE---EEEEECSSCC----CSCCEECTTCC-EEEECTTS
T ss_pred CCCCccccceEcCCCe-EEEecCCCCEEEEC------C-CCcE---EEEEEcCCcc----ccceEEcCCCE-EEEEcCCC
Confidence 4444455566666665 45677788899994 2 2222 2333333333 77778878776 55688899
Q ss_pred cEEEEe
Q 005235 701 VIRLYC 706 (707)
Q Consensus 701 ~IrlWd 706 (707)
.+++..
T Consensus 316 ~~~~~~ 321 (330)
T 3hxj_A 316 KFYALF 321 (330)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 988753
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=7.1e-08 Score=112.42 Aligned_cols=290 Identities=10% Similarity=0.013 Sum_probs=184.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc------------EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA------------IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~------------V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.++.|.-+|..||+.+..+..... ...+++. ++ .+++++.++.|..+|..++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~--~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG--KVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence 35788888899999999999999988876321 1233332 33 688888899999999998875322
Q ss_pred cccc-------ceeeec----ccccccC------CCCcEEEEecCCccceEEecc-------------------------
Q 005235 456 RRVK-------DLLHVE----TPTAPDD------NMASIVSWLQHDKLDGIRLRH------------------------- 493 (707)
Q Consensus 456 ~~~~-------~v~~~~----~~~~~~~------~d~~i~iW~~~~~~~~~~~~h------------------------- 493 (707)
.... .+.... -.+..+. .++.+..+|..++...-....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 2111 111100 0022222 268899999876655321110
Q ss_pred --------CCCeEEEEEcCCCCEEEEEeCCCC----------------ccEEEEEECCCCceeeeee---ccC-------
Q 005235 494 --------FKMVSSVEWHRRGDYLSTVMPAGE----------------SRAIFMHQLSKKLSHRIPF---KLH------- 539 (707)
Q Consensus 494 --------~~~V~~v~~sp~g~~lat~s~dg~----------------~~~V~Iwdl~~~~~~~~~~---~~~------- 539 (707)
......+++++++..++.++.++. ...|..+|..+++.. -.+ .+.
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-WHYQETPGDNWDYTST 312 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCC
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-EEEecCCCcccccccC
Confidence 011135788899988888776531 125999999998876 554 221
Q ss_pred CCeEEEEEeCCC---CEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CC----------e---------------------
Q 005235 540 GLPVSSVFHPTR---SIFFVST-KKNIRVYDLLKQRLIKKLETGL-KE----------V--------------------- 583 (707)
Q Consensus 540 ~~V~~v~fspd~---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~----------I--------------------- 583 (707)
.....+....+| ..+++++ +|.|+++|..+++++..+.... .+ +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 223333444467 5677777 8999999999999987765321 11 1
Q ss_pred ---EEEEEcCCCCEEEEEECC-------------------------------------------CcEEEEECCCCCcceE
Q 005235 584 ---SSIAIHPAGDNLIVGSRE-------------------------------------------GKLCWFDMDLSSKPYR 617 (707)
Q Consensus 584 ---~sl~~spdg~~L~sGs~D-------------------------------------------g~I~vwDl~~~~~~~~ 617 (707)
..++|+|++.+|++++.+ |.|..||+.++ +.+-
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W 471 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAW 471 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEe
Confidence 156889998888886542 77999999988 5454
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695 (707)
Q Consensus 618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s 695 (707)
.+. +...+.+..++..+.+++.++.||.+++|| +.++.. +..+...... ...-+.|.++|+.++.
T Consensus 472 ~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D------~~tG~~---lw~~~~~~~~---~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 472 SVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH------AATGEK---LWEAPTGTGV---VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE------TTTCCE---EEEEECSSCC---CSCCEEEEETTEEEEE
T ss_pred ecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE------CCCCce---eeeeeCCCCc---ccCCEEEEeCCEEEEE
Confidence 444 334455566777888888899999999994 445554 4445433221 0344667788875543
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=1.1e-07 Score=101.12 Aligned_cols=193 Identities=8% Similarity=0.019 Sum_probs=128.0
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCC--CCccEEEEEECCCCceeeeee--c-----cCCCeEEEEEeCCCCEEEEE-----
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPA--GESRAIFMHQLSKKLSHRIPF--K-----LHGLPVSSVFHPTRSIFFVS----- 557 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~d--g~~~~V~Iwdl~~~~~~~~~~--~-----~~~~V~~v~fspd~~~l~v~----- 557 (707)
.+...+..|+++++|+.+++-... .....|.+||+.+++.. ..+ . ....+..+++++++..++++
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~-~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS-RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE-EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE-EEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 456789999999998866654320 00138999999988754 433 1 12356899999876565554
Q ss_pred eCCeEEEEECCCCeEEEEEeCCC-----------------------------CCeEEEEEcCCCCEEEEEECCC-cEEEE
Q 005235 558 TKKNIRVYDLLKQRLIKKLETGL-----------------------------KEVSSIAIHPAGDNLIVGSREG-KLCWF 607 (707)
Q Consensus 558 sdg~I~iwDl~~~~~~~~l~~~~-----------------------------~~I~sl~~spdg~~L~sGs~Dg-~I~vw 607 (707)
.++.|.+||+.+++..+.+..|. ..+..|+|+|+|+.|+++...+ .|..+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 35789999999887766553310 1368899999999998887766 55555
Q ss_pred ECCC---CC----c---ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC--CCC
Q 005235 608 DMDL---SS----K---PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG--HTS 675 (707)
Q Consensus 608 Dl~~---~~----~---~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g--h~~ 675 (707)
+... +. . .+. ..++......++++++|.++++...++.|.+|+.. ++. +..+.. +..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~------~G~----~~~~~~~~~~~ 291 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA------DRA----YKLLVTDEKLS 291 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT------TTE----EEEEEECGGGS
T ss_pred EHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECC------CCC----EEEEEECCcee
Confidence 5321 00 0 011 12344456679999999999999999999999641 121 122221 122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 676 SNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 676 ~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
. +.+|+|.+++.++++.+..+
T Consensus 292 ~----p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 292 W----TDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp C----EEEEEECTTSCEEEEECCGG
T ss_pred c----CCeeEECCCCcEEEEeCccc
Confidence 3 89999999998877776443
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=2.3e-07 Score=100.92 Aligned_cols=194 Identities=8% Similarity=0.022 Sum_probs=127.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceeeeeec-cC---CCeEEEEEeCCCCEEEEEe----------
Q 005235 496 MVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHRIPFK-LH---GLPVSSVFHPTRSIFFVST---------- 558 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~~~~~-~~---~~V~~v~fspd~~~l~v~s---------- 558 (707)
....+..+|+| .++++..+. ..+.|.+.|..+.... ..+. .. .....+.|+|+++.++++.
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~-~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL-GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE-EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE-EEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence 34567778999 666555441 2358999999998877 6662 21 2244588899999988884
Q ss_pred ----------CCeEEEEECCCCeEEEEEeCCC--CCeEEEEE--cCCCCEEEEEEC------CCcEEEEECCCCC-cceE
Q 005235 559 ----------KKNIRVYDLLKQRLIKKLETGL--KEVSSIAI--HPAGDNLIVGSR------EGKLCWFDMDLSS-KPYR 617 (707)
Q Consensus 559 ----------dg~I~iwDl~~~~~~~~l~~~~--~~I~sl~~--spdg~~L~sGs~------Dg~I~vwDl~~~~-~~~~ 617 (707)
..+|.+||+.+++.+.++..+. .....|.| +|+|+++.+++. +++|.+|..+.+. ...+
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 6899999999999998888652 23455655 999999988874 5678776665321 0111
Q ss_pred Ee--ecC----------------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCC----
Q 005235 618 VL--KCH----------------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT---- 674 (707)
Q Consensus 618 ~l--~~h----------------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~---- 674 (707)
.+ ... ......+.+|+||++|.++. ..+.|.+|++. +..+.. .+..+.-..
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~---d~~~~~---lv~~I~tGG~~~~ 370 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS---NPFKPV---LTGKVKLGGIFHR 370 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS---STTSCE---EEEEEECBTTTTC
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec---CCCCcE---EEEEEEeCCeecc
Confidence 11 000 23467899999999776655 57899999764 211111 233332210
Q ss_pred ------CCCCCCeeEEEEcCCCCEEEEEe
Q 005235 675 ------SSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 675 ------~~~~~gV~~l~fspdg~~L~s~g 697 (707)
..-..+-..++++|||++|+++.
T Consensus 371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 00001257899999999999887
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.86 E-value=7.5e-07 Score=104.00 Aligned_cols=288 Identities=9% Similarity=0.001 Sum_probs=180.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc-----------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA-----------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~-----------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.++.|.-+|..||+.+..+..... + ..++.. ++ .+++++.++.|..+|..++...-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KG--KVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CC--EEEEEccCCEEEEEECCCCCEeee
Confidence 45788888899999999999999988865211 1 122322 33 588888899999999999875322
Q ss_pred cccc-------ceeeec--cc--ccccC------CCCcEEEEecCCccceEEec--------------------------
Q 005235 456 RRVK-------DLLHVE--TP--TAPDD------NMASIVSWLQHDKLDGIRLR-------------------------- 492 (707)
Q Consensus 456 ~~~~-------~v~~~~--~~--~~~~~------~d~~i~iW~~~~~~~~~~~~-------------------------- 492 (707)
.... .+.... .. +..+. .++.+..|+..++...-...
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 2111 110000 00 22222 36788989887666532111
Q ss_pred ------cCCCeEEEEEcCCCCEEEEEeCCCC----------------ccEEEEEECCCCceeeeee-c--cC-------C
Q 005235 493 ------HFKMVSSVEWHRRGDYLSTVMPAGE----------------SRAIFMHQLSKKLSHRIPF-K--LH-------G 540 (707)
Q Consensus 493 ------h~~~V~~v~~sp~g~~lat~s~dg~----------------~~~V~Iwdl~~~~~~~~~~-~--~~-------~ 540 (707)
+......+++.+++..+++++.++. ...|..+|..+++.. -.+ . +. .
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-WHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-EEEESSTTCCSCCCCCS
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-EeeecCCcccccccCCC
Confidence 0011125788888888888876641 014999999999877 555 1 21 1
Q ss_pred CeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCe--------------------------------
Q 005235 541 LPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL-KEV-------------------------------- 583 (707)
Q Consensus 541 ~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I-------------------------------- 583 (707)
.+.......+|. .+++++ +|.|+++|..+|+++....... .+.
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 222222233554 566777 8999999999999875443211 111
Q ss_pred ------EEEEEcCCCCEEEEEEC---------------------------------------------CCcEEEEECCCC
Q 005235 584 ------SSIAIHPAGDNLIVGSR---------------------------------------------EGKLCWFDMDLS 612 (707)
Q Consensus 584 ------~sl~~spdg~~L~sGs~---------------------------------------------Dg~I~vwDl~~~ 612 (707)
..++|+|+..+|++++. +|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 13688998888887643 377999999988
Q ss_pred CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~ 692 (707)
+.+-.+..+. .+....++..+.++++|+.||.|++|| ..++.. +..+...... ...-+.|..+|+.
T Consensus 466 -~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D------~~tG~~---lw~~~~~~~~---~~~p~ty~~~G~q 531 (689)
T 1yiq_A 466 -QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYA------ADTGEK---LWEQPAASGV---MAAPVTYSVDGEQ 531 (689)
T ss_dssp -EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEE------TTTCCE---EEEEECSSCC---CSCCEEEEETTEE
T ss_pred -CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEE------CCCCcc---ceeeeCCCCc---ccCceEEEECCEE
Confidence 5555555443 334446666788999999999999995 445544 4455433321 0234677788874
Q ss_pred E
Q 005235 693 L 693 (707)
Q Consensus 693 L 693 (707)
.
T Consensus 532 y 532 (689)
T 1yiq_A 532 Y 532 (689)
T ss_dssp E
T ss_pred E
Confidence 4
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.86 E-value=7.6e-08 Score=105.33 Aligned_cols=218 Identities=15% Similarity=0.124 Sum_probs=144.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccc---ee
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKD---LL 462 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~---v~ 462 (707)
.++.|.++|..+++.+..+... .....++|+|||. .++++.. ++.|.++|+.+....-.-.... +.
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~ 225 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIF 225 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeec
Confidence 4779999999999999888753 3456899999994 5666653 5789999998874321111000 00
Q ss_pred eec-ccccccCCCCcEEEEecCCccceEEe----c-cCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e
Q 005235 463 HVE-TPTAPDDNMASIVSWLQHDKLDGIRL----R-HFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I 534 (707)
Q Consensus 463 ~~~-~~~~~~~~d~~i~iW~~~~~~~~~~~----~-h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~ 534 (707)
... ..++..+.++.+...+.......... . ...+ ...+.|.+++..++..+..+ .|.+.|+....... .
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g---~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG---KIFQADLTAEGATFRA 302 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS---EEEEEEECSSCEEECC
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC---cEEEEeccCCceEEee
Confidence 000 00233445666666665333222110 0 0111 12356788998888777766 89999986554210 1
Q ss_pred eec-----------cCCCeEEEEEeCCCCEEEEEe-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235 535 PFK-----------LHGLPVSSVFHPTRSIFFVST-----------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592 (707)
Q Consensus 535 ~~~-----------~~~~V~~v~fspd~~~l~v~s-----------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg 592 (707)
++. .......++|+|++..++++. .+.|.++|+.+.+.+.++..+ ....+|+|+|+|
T Consensus 303 ~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg 381 (426)
T 3c75_H 303 PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDA 381 (426)
T ss_dssp CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSS
T ss_pred eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCC
Confidence 110 112233478999999888874 247999999999999998765 357899999999
Q ss_pred C-EEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235 593 D-NLIVGS-REGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 593 ~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l 619 (707)
+ ++++.. .++.|.++|+.+. +.++++
T Consensus 382 ~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp SCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 9 888888 5899999999987 667775
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.83 E-value=2.9e-07 Score=97.84 Aligned_cols=204 Identities=12% Similarity=0.125 Sum_probs=133.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--------ccCCCeEEEEEeCCCCEEEEEe------CC
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPTRSIFFVST------KK 560 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd~~~l~v~s------dg 560 (707)
..+..|+++++|+.|++...-.. +.+.||.+..+. . .+| .+...+.+++|++++.++++.+ +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~-~~~~l~~~~~g~-~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQ-PEMQVAELTQDG-L-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGC-CSCSEEEEETTE-E-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCC-CceEEEEECCCC-e-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 68899999999999888653211 124555554333 2 444 1335789999999987666543 37
Q ss_pred eEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCCCEE-EEEE---CCCcEEEEECCCCCcceEEeecCC-------
Q 005235 561 NIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAGDNL-IVGS---REGKLCWFDMDLSSKPYRVLKCHP------- 623 (707)
Q Consensus 561 ~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg~~L-~sGs---~Dg~I~vwDl~~~~~~~~~l~~h~------- 623 (707)
.|.+||+.+++.+..+..+ ...+..++++|++..+ ++.+ .++.|.+||+.++ +..+.+.+|.
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence 8999999999988777642 1346899999865555 4444 5789999999866 4455443321
Q ss_pred ----------------------CCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccC--CCCCCcccceEEeeCCCCCCC
Q 005235 624 ----------------------KDITNVAFHRSYPLFASCSDDC-TAYVFHGMVYSD--LNQNPLIVPLEILRGHTSSNG 678 (707)
Q Consensus 624 ----------------------~~I~~vafspdg~llaSgs~Dg-~I~Vwd~~~~~D--l~~~~~~~pl~~l~gh~~~~~ 678 (707)
..+..++|+|+++.|+.+..++ .|..++.....+ +........+. ..++...
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~-- 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPI-- 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCS--
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCC--
Confidence 2368899999999888877666 444443221111 00000000111 1233333
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 679 RGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 679 ~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
...++++++|.++++...++.|.+|+.
T Consensus 250 --pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 250 --CDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp --CSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred --CceEEECCCCCEEEEccCCCeEEEEEC
Confidence 677999999999899888999999973
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=116.82 Aligned_cols=205 Identities=10% Similarity=0.013 Sum_probs=111.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
...+|+|+.||.|+.||..+|+.+..+.. +.+.+..+..++ ..+++++.++.|+.||..++...
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~-------------- 72 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGL-------------- 72 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCS--------------
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCcee--------------
Confidence 46899999999999999999999998887 666666666666 24555568899999998766331
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF 547 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f 547 (707)
..|....... ....++. . .+..+++++.++ .|..||..+++.. ..+.... ...+
T Consensus 73 ----------w~~~~~~~~~----~~~sp~~----~-~~~~v~~g~~dg---~v~a~D~~tG~~~-w~~~~~~---~~~~ 126 (369)
T 2hz6_A 73 ----------TKLPFTIPEL----VQASPCR----S-SDGILYMGKKQD---IWYVIDLLTGEKQ-QTLSSAF---ADSL 126 (369)
T ss_dssp ----------EECSCCHHHH----HTTCSCC----------CCCCEEEE---EEEEECCC--------------------
T ss_pred ----------eeeeccCccc----cccCceE----e-cCCEEEEEeCCC---EEEEEECCCCcEE-EEecCCC---cccc
Confidence 1111100000 0011111 1 244566667666 9999999998876 5552222 2345
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 548 HPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG---DNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 548 spd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg---~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
+|++..+++++ ++.|+.||..+++.+..+..+. ..+.++++++ ..+++++.+|.|+.||..++ +.+-.+....
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~ 203 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS 203 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS
T ss_pred cccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC
Confidence 67777888877 8999999999998766654321 2233444432 56788999999999999987 4555555333
Q ss_pred CCEEEEEEcCCCCE
Q 005235 624 KDITNVAFHRSYPL 637 (707)
Q Consensus 624 ~~I~~vafspdg~l 637 (707)
..+...++++++.+
T Consensus 204 pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 204 PVVAFYVWQREGLR 217 (369)
T ss_dssp CEEEEEECTTSSCE
T ss_pred ceEEEEEecCCceE
Confidence 22333455566643
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.79 E-value=1.2e-06 Score=93.89 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=155.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc-cee----
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK-DLL---- 462 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~-~v~---- 462 (707)
...++.++.++.|..+|..+|+.+..+.....+.+.....++ .+++++.++.|..+|..++......... ...
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 357888899999999999999998887764333221112244 5888888999999999888653221111 110
Q ss_pred -----eecccccccCCCCcEEEEecCCccceEEeccCCC-----------e-EEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235 463 -----HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM-----------V-SSVEWHRRGDYLSTVMPAGESRAIFMHQ 525 (707)
Q Consensus 463 -----~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~-----------V-~~v~~sp~g~~lat~s~dg~~~~V~Iwd 525 (707)
...-.+..+..++.+..++..++...-....... + ..... .+..+++++.++ .+..+|
T Consensus 181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g---~l~~~d 255 (376)
T 3q7m_A 181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNG---NLTALD 255 (376)
T ss_dssp CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTS---CEEEEE
T ss_pred CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCc---EEEEEE
Confidence 0000145566678888888876554332211110 0 11111 246677777766 899999
Q ss_pred CCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCc
Q 005235 526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGK 603 (707)
Q Consensus 526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~ 603 (707)
..+++.. ..... .....+... +..+++++ ++.|..+|..+++.+..... ....+.+..+. +..|++++.+|.
T Consensus 256 ~~tG~~~-w~~~~-~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~ 329 (376)
T 3q7m_A 256 LRSGQIM-WKREL-GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGY 329 (376)
T ss_dssp TTTCCEE-EEECC-CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSE
T ss_pred CCCCcEE-eeccC-CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCe
Confidence 9888765 44422 223444443 55666666 78999999999998877762 22333444443 578999999999
Q ss_pred EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEe
Q 005235 604 LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 604 I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vwd 651 (707)
|.++|..++ +.+.........+.+ ... .+..|+.++.+|.|..|+
T Consensus 330 l~~~d~~tG-~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 330 LHWINVEDG-RFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEETTTC-CEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEECCCC-cEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999987 555555543333322 222 245677788999999884
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=9.8e-07 Score=90.16 Aligned_cols=197 Identities=9% Similarity=-0.006 Sum_probs=131.3
Q ss_pred ccCC--CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEE
Q 005235 492 RHFK--MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVY 565 (707)
Q Consensus 492 ~h~~--~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iw 565 (707)
.|.. ....++|+++|..+++.+..+ .+.|.+.|+.+++.. ..+ ........++++ +..|++++ ++.+.++
T Consensus 16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~-~s~v~~iD~~tg~v~-~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAENDTLFESTGLYG-RSSVRQVALQTGKVE-NIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp ECCTTCCEEEEEECSTTEEEEEECSTT-TCEEEEEETTTCCEE-EEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred ECCCCCCcccEEEeCCCeEEEECCCCC-CCEEEEEECCCCCEE-EEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 4553 357999999875445444322 359999999999887 555 332233445554 66788877 7999999
Q ss_pred ECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-----CCEEEEEEcCCCCEEE
Q 005235 566 DLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-----KDITNVAFHRSYPLFA 639 (707)
Q Consensus 566 Dl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-----~~I~~vafspdg~lla 639 (707)
|..+.+.+.++..+ .. .+.++++|..|+++..++.|.++|..+. +....+.-.. ..++.+.|. ++.+++
T Consensus 92 D~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp ETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred ECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence 99999999998754 22 2345668887777778899999999876 5555554211 246788888 777777
Q ss_pred EEeCCCcEEEEecccccCCCCCCcccceEEeeCC---------CCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 640 SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH---------TSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 640 Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh---------~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
....++.|.+.| ..++.. +..+.-. ..........++|+|++..|+.++ ..+.|.+-+
T Consensus 167 n~~~~~~V~vID------~~tg~V---~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 167 NIWQTDCIARIS------AKDGTL---LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EETTSSEEEEEE------TTTCCE---EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred ecCCCCeEEEEE------CCCCcE---EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 776788999994 445544 3333211 000011268999999998765554 566666543
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.75 E-value=1.7e-06 Score=94.14 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=142.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC----eEEEEEec--------CCcEEEEEEccCCCccEEEEEeC------CeEEEEECC
Q 005235 387 ACYLEYKGSTDGTVRIWEVESG----RCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVG------QDVLILNTG 448 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d------~~V~lwd~~ 448 (707)
...++++|..+++|.|.|+.+. +.+++++. ......+..+|+| .++++..+ +.|.++|..
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECC
Confidence 3456777888899999999866 77888841 2356778899999 45555444 567777766
Q ss_pred CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC-------------
Q 005235 449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA------------- 515 (707)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d------------- 515 (707)
++. .+..|.... .-..--..+.|+|+++.+++....
T Consensus 173 T~~------------------------v~~~~~~~~-------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 173 SFE------------------------PLGKWEIDR-------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp TCC------------------------EEEECCSBC-------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred CCe------------------------EEEEEccCC-------CCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 542 122332110 111223468889999988887410
Q ss_pred ---CCccEEEEEECCCCceeeeeecc---CCCeEEEEE--eCCCCEEEEEe-------CCeEEEEECCCCeE--EEEE--
Q 005235 516 ---GESRAIFMHQLSKKLSHRIPFKL---HGLPVSSVF--HPTRSIFFVST-------KKNIRVYDLLKQRL--IKKL-- 576 (707)
Q Consensus 516 ---g~~~~V~Iwdl~~~~~~~~~~~~---~~~V~~v~f--spd~~~l~v~s-------dg~I~iwDl~~~~~--~~~l-- 576 (707)
.....|.+||+.+++.. ..+.. ......+.| +|+++++++++ +++|.+|....+.. .+.+
T Consensus 222 ~~~~~~d~V~v~D~~~~k~~-~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRKRI-HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp HHHHSCCEEEEEETTTTEEE-EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhccCCEEEEEECCCCcEe-eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 01349999999987655 55622 234555656 99999988754 36777766544421 1211
Q ss_pred eCC----------------CCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC--cceEEeecCC--------------
Q 005235 577 ETG----------------LKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS--KPYRVLKCHP-------------- 623 (707)
Q Consensus 577 ~~~----------------~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~--~~~~~l~~h~-------------- 623 (707)
... ...+..|.+||||++|.++.. .+.|.+||+.... +.+..+....
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence 110 134788999999999988765 5789999986332 3344443221
Q ss_pred CCEEEEEEcCCCCEEEEEe
Q 005235 624 KDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs 642 (707)
+.-+.++++|+|++|+++.
T Consensus 381 ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEcCCCCEEEEEc
Confidence 1247899999999888877
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=1.1e-06 Score=98.87 Aligned_cols=221 Identities=11% Similarity=0.020 Sum_probs=139.7
Q ss_pred CcEEEEecCCccceE--EeccCCCeEEEEE-c-CCCCEEEEEeCC-------C--------CccEEEEEECCCCceeeee
Q 005235 475 ASIVSWLQHDKLDGI--RLRHFKMVSSVEW-H-RRGDYLSTVMPA-------G--------ESRAIFMHQLSKKLSHRIP 535 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~--~~~h~~~V~~v~~-s-p~g~~lat~s~d-------g--------~~~~V~Iwdl~~~~~~~~~ 535 (707)
..|.+-++...+... .+.....+..+++ + |++.|+++++.. | ..+.+.+.|..+.+.. ..
T Consensus 112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~-~q 190 (595)
T 1fwx_A 112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA-WQ 190 (595)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE-EE
T ss_pred CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE-EE
Confidence 344555554433322 2233456788888 5 899999888632 1 2458999999987766 55
Q ss_pred eccCCCeEEEEEeCCCCEEEEEe-CC--------------------------------------eEEEEECCC--CeE-E
Q 005235 536 FKLHGLPVSSVFHPTRSIFFVST-KK--------------------------------------NIRVYDLLK--QRL-I 573 (707)
Q Consensus 536 ~~~~~~V~~v~fspd~~~l~v~s-dg--------------------------------------~I~iwDl~~--~~~-~ 573 (707)
+...+....++++|+|+++++++ +. .|.|.|..+ ++. +
T Consensus 191 I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~ 270 (595)
T 1fwx_A 191 VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT 270 (595)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE
T ss_pred EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE
Confidence 53333567888999999999887 21 377788777 444 4
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC-----------cceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSS-----------KPYRVLKCHPKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~-----------~~~~~l~~h~~~I~~vafspdg~llaSg 641 (707)
..+..+ ....++.++|||+++++++ .+.+|.++|+.+.. .....+. -...-+.++|+|+|...++.
T Consensus 271 ~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~ 348 (595)
T 1fwx_A 271 RYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSL 348 (595)
T ss_dssp EEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEE
T ss_pred EEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEE
Confidence 555443 3467899999999887765 57889999998531 1223332 23457899999999666677
Q ss_pred eCCCcEEEEecccccC-CCCCCcccceEEeeCCCCCC-CCCeeEEEEcCCCCEEEEEeC
Q 005235 642 SDDCTAYVFHGMVYSD-LNQNPLIVPLEILRGHTSSN-GRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~D-l~~~~~~~pl~~l~gh~~~~-~~gV~~l~fspdg~~L~s~g~ 698 (707)
-.|++|.+|++..... +........+..+..|-... ...-.++.++|||+||+++..
T Consensus 349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 7899999998653100 00001112355665553310 000122346899999998863
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.73 E-value=1.6e-07 Score=100.95 Aligned_cols=225 Identities=7% Similarity=-0.014 Sum_probs=142.4
Q ss_pred CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEE--EECCCCCchhcc-ccccee
Q 005235 396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLI--LNTGLGNEEEQR-RVKDLL 462 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~l--wd~~~~~~~~~~-~~~~v~ 462 (707)
.+++|.+||+.+++.+.++... .....++++|||. .++++.. ++.|.+ +|+.+ ...+.. ....+.
T Consensus 94 ~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~ 171 (368)
T 1mda_H 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIH 171 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCE
T ss_pred CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEc
Confidence 4789999999999999998763 3467899999994 6666664 457888 88765 111100 000000
Q ss_pred eec-ccccccCCCCcEEEEecCC-----ccceE-----EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235 463 HVE-TPTAPDDNMASIVSWLQHD-----KLDGI-----RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531 (707)
Q Consensus 463 ~~~-~~~~~~~~d~~i~iW~~~~-----~~~~~-----~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~ 531 (707)
... ..+.+.+.++.+...+... +.... ..-...+. . ++++..++.++. + .|.+.|+.....
T Consensus 172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~---~V~viD~~~~~~ 243 (368)
T 1mda_H 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-S---SILQGDIPAAGA 243 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-S---CCEEEECCSSCC
T ss_pred cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-C---EEEEEECCCCcc
Confidence 000 0033445677777776654 22110 00011222 3 566676666666 6 888999865431
Q ss_pred -eeeeec-----------cCCCeEEEEEeCCCCEEEEEe--C-C-------eEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 005235 532 -HRIPFK-----------LHGLPVSSVFHPTRSIFFVST--K-K-------NIRVYDLLKQRLIKKLETGLKEVSSIAIH 589 (707)
Q Consensus 532 -~~~~~~-----------~~~~V~~v~fspd~~~l~v~s--d-g-------~I~iwDl~~~~~~~~l~~~~~~I~sl~~s 589 (707)
....+. .......++|+|++..++++. + + .+.++|+.+++.+.++..+. ...+|+|+
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s 322 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA 322 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC
Confidence 101111 011223378999999988763 3 3 67799999999998887663 68899999
Q ss_pred CCCCE-EEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC
Q 005235 590 PAGDN-LIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR 633 (707)
Q Consensus 590 pdg~~-L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp 633 (707)
|+|+. +++.. .++.|.++|+.+. +.++++..... -..+++++
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC-CCEEECCC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC-CCEEEeec
Confidence 99984 55555 5899999999987 77787775543 34566554
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=3.4e-06 Score=86.15 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=137.2
Q ss_pred CeEEEEEecC--CcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEec
Q 005235 408 GRCLRVLEIG--EAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ 482 (707)
Q Consensus 408 g~~l~~l~~~--~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~ 482 (707)
.+.+.++.+. .....++|+|++ .|+.++. ++.|.++|+.++... ...
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~------------------------~~i-- 60 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVE------------------------NIH-- 60 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEE------------------------EEE--
T ss_pred ceEEEEEECCCCCCcccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEE------------------------EEE--
Confidence 4567777774 346899999987 5666553 578999998876321 000
Q ss_pred CCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCe
Q 005235 483 HDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKN 561 (707)
Q Consensus 483 ~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~ 561 (707)
..+.......++++ |+.|..+... .+.+.++|..+.+.. ..+... ......+++++..++++. ++.
T Consensus 61 -------~l~~~~fgeGi~~~--g~~lyv~t~~--~~~v~viD~~t~~v~-~~i~~g-~~~g~glt~Dg~~l~vs~gs~~ 127 (266)
T 2iwa_A 61 -------KMDDSYFGEGLTLL--NEKLYQVVWL--KNIGFIYDRRTLSNI-KNFTHQ-MKDGWGLATDGKILYGSDGTSI 127 (266)
T ss_dssp -------ECCTTCCEEEEEEE--TTEEEEEETT--CSEEEEEETTTTEEE-EEEECC-SSSCCEEEECSSSEEEECSSSE
T ss_pred -------ecCCCcceEEEEEe--CCEEEEEEec--CCEEEEEECCCCcEE-EEEECC-CCCeEEEEECCCEEEEECCCCe
Confidence 01111122345554 5566665542 249999999988877 667222 112244666888888776 789
Q ss_pred EEEEECCCCeEEEEEeCCCC-----CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------C
Q 005235 562 IRVYDLLKQRLIKKLETGLK-----EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------P 623 (707)
Q Consensus 562 I~iwDl~~~~~~~~l~~~~~-----~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~ 623 (707)
|.++|..+.+.+.++..... .++.+.|. +|...+....++.|.+.|..++ +.+..+... .
T Consensus 128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~ 205 (266)
T 2iwa_A 128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDI 205 (266)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTC
T ss_pred EEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC-cEEEEEECCCccccccccccccc
Confidence 99999999988888875422 36788888 6754444445789999999987 667776532 1
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235 624 KDITNVAFHRSYP-LFASCSDDCTAYVFHGM 653 (707)
Q Consensus 624 ~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~ 653 (707)
...+.++|+|++. +|+++...+.|.+.++.
T Consensus 206 ~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 3568999999986 66677778888888654
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.64 E-value=1.2e-06 Score=91.25 Aligned_cols=213 Identities=12% Similarity=0.083 Sum_probs=146.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
...++.|+.++.|..+|.. |+.+..+.. ...+.++...+++ .+++++.++.|..++.. +.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~--------------- 167 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT--------------- 167 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC---------------
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC---------------
Confidence 4567888889999999988 887776665 4456677777777 58887778889888865 32
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
.+|.. ......+.++.+.++|..++.. + .|..++ .++... ..+ .....+.++
T Consensus 168 -----------~~~~~--------~~~~~~~~~~~~d~~g~l~v~t---~---~l~~~d-~~g~~~-~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 168 -----------EKWRF--------KTNDAITSAASIGKDGTIYFGS---D---KVYAIN-PDGTEK-WNFYAGYWTVTRP 220 (330)
T ss_dssp -----------EEEEE--------ECSSCCCSCCEECTTCCEEEES---S---SEEEEC-TTSCEE-EEECCSSCCCSCC
T ss_pred -----------EeEEE--------ecCCCceeeeEEcCCCEEEEEe---C---EEEEEC-CCCcEE-EEEccCCcceece
Confidence 12211 1123345666777777755544 4 688888 555544 444 444668888
Q ss_pred EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235 546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
++.+++.+.+.+.++.|..+|. +++.+..+......+.++.+.++| .|.+|+.+|.|..+|. ++ +....+......
T Consensus 221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~ 296 (330)
T 3hxj_A 221 AISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWI 296 (330)
T ss_dssp EECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCC
T ss_pred EECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCcc
Confidence 8888886655555788999984 566666666554555666776555 6777888889999996 44 445555555566
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
+.++...+++.++ .++.+|.+++..
T Consensus 297 ~~~~~~d~~g~l~-~gt~~G~~~~~~ 321 (330)
T 3hxj_A 297 IATPVIDENGTIY-FGTRNGKFYALF 321 (330)
T ss_dssp CSCCEECTTCCEE-EECTTSCEEEEE
T ss_pred ccceEEcCCCEEE-EEcCCCeEEEEe
Confidence 7788887888755 578899999884
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.63 E-value=7.4e-07 Score=100.13 Aligned_cols=235 Identities=10% Similarity=0.083 Sum_probs=147.1
Q ss_pred cEEE-EEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEE-c-cCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 389 YLEY-KGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAW-N-PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 389 ~~l~-sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~-s-pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
.++| +...++.|.+-|+.+.++...+.. ...+..+++ + |++. ++++++... +=+ ...+.. +..
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~-~p~--~~dg~~-l~~------- 169 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDE-TPL--VNDGTN-MED------- 169 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSC-EES--SCSSSS-TTC-------
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccc-ccc--CCCCcc-ccc-------
Confidence 3444 445567799999999999996655 577899998 5 8884 566554221 100 000000 000
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc-------------------------
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES------------------------- 518 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~------------------------- 518 (707)
....++.+.+.|..+......+.-.+....++++|+|+++++.+.+...
T Consensus 170 ------~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 170 ------VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp ------GGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ------ccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 0011223444444443332222222345667788888888888765411
Q ss_pred ----------cEEEEEECCC--CceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe------------E
Q 005235 519 ----------RAIFMHQLSK--KLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR------------L 572 (707)
Q Consensus 519 ----------~~V~Iwdl~~--~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~------------~ 572 (707)
+.|.|.|..+ +......+.......++.|+|||++++++. +.+|.++|+.+.+ .
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 2477777776 333113333344677899999999999988 7999999998653 4
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------CcceEEeecCCCCE-----EEEEEcCCCCEE
Q 005235 573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---------SKPYRVLKCHPKDI-----TNVAFHRSYPLF 638 (707)
Q Consensus 573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---------~~~~~~l~~h~~~I-----~~vafspdg~ll 638 (707)
+..+..+ .....++|+|+|...++...|+.|.+||++.. ...+.++..|-.+- .++.++|||++|
T Consensus 324 ~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 5555555 45789999999944455667899999999761 24566666664432 123458999988
Q ss_pred EEEe
Q 005235 639 ASCS 642 (707)
Q Consensus 639 aSgs 642 (707)
+++.
T Consensus 403 ~~~N 406 (595)
T 1fwx_A 403 VCLS 406 (595)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 8875
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=5.4e-06 Score=83.95 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=128.8
Q ss_pred ccCCCe--EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 005235 492 RHFKMV--SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDL 567 (707)
Q Consensus 492 ~h~~~V--~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl 567 (707)
.|.... ..+.|+ ++..+.+.+.+| ...|+++|+.+++.. ..+............+++..|++++ ++.+.+||.
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g-~S~v~~vD~~Tgkv~-~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNG-RSSIRKVDIESGKTL-QQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETT-EEEEEEECTTTCCEE-EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCC-CceEEEEECCCCcEE-EEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 555444 788998 666666666554 569999999999887 6653334444433444566788777 799999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--C---CCEEEEEEcCCCCEEEEEe
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--P---KDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~---~~I~~vafspdg~llaSgs 642 (707)
.+.+.+.++.... ....++++|..|+.+..+++|.++|..+. +....+.-. . ..++.+.|. +|.++|..-
T Consensus 115 ~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 115 RNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp TTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 9999999988643 22334467888877777788999999877 555555421 1 345667886 787777776
Q ss_pred CCCcEEEEecccccCCCCCCcccceEEeeCC-----C---CCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235 643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----T---SSNGRGVMDCKFHPRQPWLFTAGAD 699 (707)
Q Consensus 643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~---~~~~~gV~~l~fspdg~~L~s~g~D 699 (707)
.+..|.+. |..++.. +..+.-. . .......+.|||+|++..|+.+|..
T Consensus 190 ~~~~I~vI------Dp~tG~V---~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRI------DPETGKV---TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEE------CTTTCBE---EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEE------ECCCCcE---EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 78889999 5545544 2222211 0 0011226899999999988877753
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.60 E-value=1.6e-05 Score=80.70 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=132.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeee
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
.+.++++....+.|.+++..++.....+.. .....+|++.|++. .++.+. ..+.|.++++.....
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~------------ 113 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQR------------ 113 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSC------------
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCCCE------------
Confidence 445666666788999999876654333333 35789999999753 455444 456788877643210
Q ss_pred cccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP 542 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V 542 (707)
..+. ........++++|++..|..+......+.|..+++...... ... ......
T Consensus 114 -----------------------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P 169 (267)
T 1npe_A 114 -----------------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLP 169 (267)
T ss_dssp -----------------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCE
T ss_pred -----------------------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCC
Confidence 0111 11245689999997666655554311248888888754332 222 333568
Q ss_pred EEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235 543 VSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 543 ~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l 619 (707)
..++++|++..|+++. .+.|.++|+........+.. ......|++. +..|+++. ..+.|.++|..++ +....+
T Consensus 170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i 245 (267)
T 1npe_A 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTF 245 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEE
Confidence 8999999988888776 58999999976544433433 3445677765 45555554 5688999999876 566666
Q ss_pred ecCC-CCEEEEEEcCCCC
Q 005235 620 KCHP-KDITNVAFHRSYP 636 (707)
Q Consensus 620 ~~h~-~~I~~vafspdg~ 636 (707)
.... .....+++.|++.
T Consensus 246 ~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 246 HPHKQTRLYGITIALSQC 263 (267)
T ss_dssp CCSSCCCCCCEEEECSCC
T ss_pred ccccccccceeeecCccC
Confidence 5332 2356778877754
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=5.2e-06 Score=96.65 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=155.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC------CcEEEEEEccCCCccEEEEEe------CCeEEEEECCCCCchh
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG------EAIQYVAWNPLPELPVLAVSV------GQDVLILNTGLGNEEE 454 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~------~~V~~v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~ 454 (707)
....+|.++.|+.|..+|..||+.+..+... ..+.+.-...++ .+++++. ++.|..||..++...-
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568889999999999999999999888764 122221111234 4555553 6889999998886532
Q ss_pred cccc------------------------cce----------eeecc----c-ccccCCC-------------------Cc
Q 005235 455 QRRV------------------------KDL----------LHVET----P-TAPDDNM-------------------AS 476 (707)
Q Consensus 455 ~~~~------------------------~~v----------~~~~~----~-~~~~~~d-------------------~~ 476 (707)
.... ... ....+ . +..+..+ +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 1110 000 00011 0 1112211 24
Q ss_pred EEEEecCCccceEEe---ccC-------CCeEEEEEcCCC---CEEEEEeCCCCccEEEEEECCCCceeeeee--ccC--
Q 005235 477 IVSWLQHDKLDGIRL---RHF-------KMVSSVEWHRRG---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH-- 539 (707)
Q Consensus 477 i~iW~~~~~~~~~~~---~h~-------~~V~~v~~sp~g---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~-- 539 (707)
+..++..++...-.. .|. .....+....+| ..+++++.+| .|.++|..+++.. ..+ ...
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G---~l~~lD~~tG~~l-~~~~~~~~~~ 360 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG---FFFVLDRTNGKFI-SAKNFVPVNW 360 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEE-EEEESSCCSS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCC---EEEEEECCCCCEe-ccccccccCc
Confidence 777777766553321 121 222333444477 6788888887 9999999998875 333 110
Q ss_pred -------CC-e------------------------EEEEEeCCCCEEEEEe-C---------------------------
Q 005235 540 -------GL-P------------------------VSSVFHPTRSIFFVST-K--------------------------- 559 (707)
Q Consensus 540 -------~~-V------------------------~~v~fspd~~~l~v~s-d--------------------------- 559 (707)
+. + ..++|+|+..++++.. +
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 00 0 2578999988888753 1
Q ss_pred ----------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-
Q 005235 560 ----------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH- 622 (707)
Q Consensus 560 ----------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h- 622 (707)
+.|..||+.+++.+.++..+ ..+.+..+...|.++++|+.||.|++||+.++ +.+..+...
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~ 518 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGT 518 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCC
Confidence 67999999999999888754 33444556667889999999999999999988 666666533
Q ss_pred CCCEEEEEEcCCCCEEEE
Q 005235 623 PKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 623 ~~~I~~vafspdg~llaS 640 (707)
.....-+.|..+|+.+++
T Consensus 519 ~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCCEEEEeCCEEEEE
Confidence 333345677788874443
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.59 E-value=5.4e-06 Score=96.75 Aligned_cols=247 Identities=11% Similarity=0.031 Sum_probs=153.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecC-C--cEEEEEEcc---CCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG-E--AIQYVAWNP---LPELPVLAVSV------GQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-~--~V~~v~~sp---dg~~~lla~s~------d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.|+.|..+|..||+.+..+... . ....+..+| ++ .+++++. ++.|..||..++...-.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 467889999999999999999999887653 1 001111122 44 4555442 57899999998865322
Q ss_pred cccc--------------------------------cee-eecc----c-ccccCCCC-------------------cEE
Q 005235 456 RRVK--------------------------------DLL-HVET----P-TAPDDNMA-------------------SIV 478 (707)
Q Consensus 456 ~~~~--------------------------------~v~-~~~~----~-~~~~~~d~-------------------~i~ 478 (707)
.... .+. ...+ . +..+..++ .+.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 1100 000 0111 0 22222222 378
Q ss_pred EEecCCccceEE-ec--cC-------CCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeeeee--ccC----
Q 005235 479 SWLQHDKLDGIR-LR--HF-------KMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH---- 539 (707)
Q Consensus 479 iW~~~~~~~~~~-~~--h~-------~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~---- 539 (707)
.||..++...-. .. |. ..+.......+|. .++.++.+| .++++|..+++.. ... ...
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l-~~~~~~~~~w~~ 354 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG---FFYVIDRATGELL-SAKGIVPQSWTK 354 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEE-EEEESSCCSSEE
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC---eEEEEECCCCCEe-cccccccccccc
Confidence 888877665432 11 21 1222223333565 788888877 9999999988765 221 100
Q ss_pred ----------------------------------CCeEEEEEeCCCCEEEEEe---------------------------
Q 005235 540 ----------------------------------GLPVSSVFHPTRSIFFVST--------------------------- 558 (707)
Q Consensus 540 ----------------------------------~~V~~v~fspd~~~l~v~s--------------------------- 558 (707)
..-..++|+|+..++++.+
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 0112378999888888752
Q ss_pred -------------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235 559 -------------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL 619 (707)
Q Consensus 559 -------------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l 619 (707)
++.|+.||+.+++.+.++..+... ..-.+...|.+|++|+.||.|+.||.+++ +.+..+
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~ 512 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQ 512 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEECCCC-ccceee
Confidence 267999999999999888766433 33355567889999999999999999998 666666
Q ss_pred ecCCC-CEEEEEEcCCCCE-EEEEe
Q 005235 620 KCHPK-DITNVAFHRSYPL-FASCS 642 (707)
Q Consensus 620 ~~h~~-~I~~vafspdg~l-laSgs 642 (707)
+.... ...-+.|..+|+. +++.+
T Consensus 513 ~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 513 PAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eCCCCcccCceEEEECCEEEEEEEe
Confidence 54432 2345778888884 44433
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.58 E-value=7.5e-09 Score=111.64 Aligned_cols=177 Identities=11% Similarity=0.028 Sum_probs=94.6
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE- 582 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~- 582 (707)
++..+++++.++ .|..||..+++.. ..+.. +.+.+..+..++..+++++ |+.|+.||..+++.+..+..+...
T Consensus 8 ~~~~v~~gs~dg---~v~a~d~~tG~~~-W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDG---SLHAVSKRTGSIK-WTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTS---EEEEEETTTCCEE-EEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCC---EEEEEECCCCCEE-EEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 578899999888 9999999999887 66633 5566666667777777765 899999999988876665433111
Q ss_pred e-EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235 583 V-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 583 I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~ 661 (707)
+ .+..+. .+..|++|+.++.|+.||..++ +....+..+. .+.++|++..+++++.|+.|+.||. .++
T Consensus 83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~------~tG 150 (369)
T 2hz6_A 83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDT------KTR 150 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCS------SSS
T ss_pred cccCceEe-cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEEC------CCC
Confidence 1 011111 3557888999999999999988 4555555443 2456778889999999999999954 444
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcCCC---CEEEEEeCCCcEEEEeC
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQ---PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg---~~L~s~g~Dg~IrlWdl 707 (707)
... -.+..+. ....+++++. ..+++++.||.|..||.
T Consensus 151 ~~~---W~~~~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 151 ELR---WNATYFD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp SCC---CEEEEEE------ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred CEE---EeEeccc------ccCccccCCccccceEEEECCCCEEEEEEC
Confidence 332 1111110 1112233332 45677888898888873
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.52 E-value=0.00029 Score=83.36 Aligned_cols=294 Identities=8% Similarity=0.088 Sum_probs=178.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc---------c
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLE--IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR---------V 458 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~--~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~---------~ 458 (707)
.++.|+.++-|..|+..+++...... ....|.++...+++ .+.+++.++.|.+|+..++....... .
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT--RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISS 262 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT--EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCC
Confidence 45556766558899988776543211 25678999988888 57777777679999987653211111 1
Q ss_pred cceeeeccc----ccccCCCCcEEEEecCCccceEEec--------cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235 459 KDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRLR--------HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL 526 (707)
Q Consensus 459 ~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl 526 (707)
..+.++... +..++.. -+.+|+........... ....|.++...++|...+ |+.++ .|..++.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~---Gl~~~~~ 337 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFG---GLNYYHP 337 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSS---CEEEECG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCC---CeEEeCC
Confidence 223333221 3334333 46777766544332211 235699999999888555 44444 6788876
Q ss_pred CCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC--------CCCCeEEEEEcCCC
Q 005235 527 SKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET--------GLKEVSSIAIHPAG 592 (707)
Q Consensus 527 ~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~--------~~~~I~sl~~spdg 592 (707)
.+........ . ....|.+++..+++.+.+...++.|..||..+++...-... ....|.++...++|
T Consensus 338 ~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 338 IRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred CcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 5543320111 1 23468999998888755543367899999887654332211 23569999999888
Q ss_pred CEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235 593 DNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL 667 (707)
Q Consensus 593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl 667 (707)
..|.+|+.++-|.+||..++ + +..+. .....|.++...++|.+.+... . -|.+|+.. +.. .
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~------~~~----~ 483 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSG-Q-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPE------QRS----F 483 (795)
T ss_dssp TEEEEEETTTEEEEEETTTC-C-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETT------TTE----E
T ss_pred CEEEEEeCcCceeEEeCCCC-c-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCC------CCe----E
Confidence 86788888888999998865 2 33333 1345799999999898666554 4 48888532 211 1
Q ss_pred EEeeCC---CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 668 EILRGH---TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 668 ~~l~gh---~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
..+... .......|.++...++|.+.+... .| |..|+
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~ 523 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFK 523 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEe
Confidence 111110 000012289999998888665544 44 55554
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=6.2e-05 Score=78.25 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=139.9
Q ss_pred CeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235 408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL 486 (707)
Q Consensus 408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~ 486 (707)
.+.+..+.......+++|++++ .|+++. .++.|..|+.... ....|
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g--~lyv~d~~~~~I~~~d~~g~-------------------------~~~~~------ 68 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDG--TIFVTNHEVGEIVSITPDGN-------------------------QQIHA------ 68 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTS--CEEEEETTTTEEEEECTTCC-------------------------EEEEE------
T ss_pred ceEeEeCCCCCCcceEEECCCC--CEEEEeCCCCeEEEECCCCc-------------------------eEEEE------
Confidence 4455555555678899999998 466665 5678888775432 11122
Q ss_pred ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
.....+..+++.++|+++++..... ...|..++..++... ... ........+++.+.+..+++.. .+.|.
T Consensus 69 -----~~~~~p~gia~~~dG~l~vad~~~~-~~~v~~~d~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~ 141 (306)
T 2p4o_A 69 -----TVEGKVSGLAFTSNGDLVATGWNAD-SIPVVSLVKSDGTVE-TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW 141 (306)
T ss_dssp -----ECSSEEEEEEECTTSCEEEEEECTT-SCEEEEEECTTSCEE-EEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred -----eCCCCceeEEEcCCCcEEEEeccCC-cceEEEEcCCCCeEE-EEEeCCCccccCcccccCCCcEEEEECCCCeEE
Confidence 1234578899999999666554322 125667777766543 222 2223345566555554444443 78999
Q ss_pred EEECCCCeE-EEEEe---------CCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCc--ceEEeecCCCCEEEEE
Q 005235 564 VYDLLKQRL-IKKLE---------TGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSK--PYRVLKCHPKDITNVA 630 (707)
Q Consensus 564 iwDl~~~~~-~~~l~---------~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~--~~~~l~~h~~~I~~va 630 (707)
++|..+++. +.... ......+.| +|+|.+|+++ +..++|..||++.... ....+.. ......++
T Consensus 142 ~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~ 218 (306)
T 2p4o_A 142 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFA 218 (306)
T ss_dssp EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEE
T ss_pred EEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeE
Confidence 999876532 21111 111234555 7888776555 4567899999874211 1222221 12356789
Q ss_pred EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc---CCCCEEEEEeCC
Q 005235 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH---PRQPWLFTAGAD 699 (707)
Q Consensus 631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs---pdg~~L~s~g~D 699 (707)
++++|.++++....+.|.+|+ .. +.. ..+..+..... ...+++|. |++..|+.++..
T Consensus 219 vd~dG~l~va~~~~~~V~~~~------~~-G~~-~~~~~~~~~~~----~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 219 FDVEGNLYGATHIYNSVVRIA------PD-RST-TIIAQAEQGVI----GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EBTTCCEEEECBTTCCEEEEC------TT-CCE-EEEECGGGTCT----TEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEeCCCCeEEEEC------CC-CCE-EEEeecccccC----CceEEEEecccCCCCEEEEECCC
Confidence 999999888877788999994 22 211 01112222212 28999999 898888766543
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.00013 Score=74.02 Aligned_cols=191 Identities=14% Similarity=0.051 Sum_probs=121.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR 571 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~ 571 (707)
..+..++|++++..|..+... .+.|..+++...... ..+ ........++++|++..|+++. .+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECC--CCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 356899999977776666542 248999999876543 333 3335789999999877777776 6899999987543
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCC-EEEEEeCCCc
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYP-LFASCSDDCT 646 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~-llaSgs~Dg~ 646 (707)
....+.........++++|++..|..+.. .+.|..++++.. ....+. ..-.....+++++++. ++++....+.
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 22223233356789999997666665554 368989998743 223332 2334578999999866 4455556788
Q ss_pred EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
|.+++.. .... ...+.+-. . ...++.. +..|+.+. ..+.|..++
T Consensus 191 I~~~~~~------g~~~---~~~~~~~~-~----P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 191 AECLNPA------QPGR---RKVLEGLQ-Y----PFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EEEEETT------EEEE---EEEEECCC-S----EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEEecC------CCce---EEEecCCC-C----ceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 9999653 1111 11222211 1 4566654 45555444 557787775
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=2.3e-05 Score=78.53 Aligned_cols=190 Identities=12% Similarity=0.093 Sum_probs=125.5
Q ss_pred ccCC--CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 005235 492 RHFK--MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDL 567 (707)
Q Consensus 492 ~h~~--~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl 567 (707)
.|.. -...+.|+. +..+.+.+..| ...|+++|+.+++.. ..+............+.+..|+..+ ++.+.+||.
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g-~S~v~~vD~~tgkv~-~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETG-RSSVRKVDLETGRIL-QRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTT-SCEEEEEETTTCCEE-EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred CCCCccccccEEEEC-CEEEEECCCCC-CceEEEEECCCCCEE-EEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 4543 456889986 55555555544 569999999999887 6553333443333334466777777 899999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-----CCEEEEEEcCCCCEEEEEe
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-----KDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-----~~I~~vafspdg~llaSgs 642 (707)
.+.+.+.++...... ..| .+++..|+++..++.|.++|..+. +...++.-.. ..++.+.|. +|.++|..-
T Consensus 93 ~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp TTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 999999999865322 233 356777777777889999999887 5555554321 345667766 677777666
Q ss_pred CCCcEEEEecccccCCCCCCcccceEEeeCC-----C----CCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----T----SSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~----~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
.+..|.+. |..++.. +..+.-. . .....-.+.|+|+|++..|+.+|.
T Consensus 168 ~s~~I~vI------Dp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARI------DPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEE------CTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEE------ECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67788888 4545544 2222211 0 001112789999999888877764
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=5.8e-05 Score=78.90 Aligned_cols=227 Identities=14% Similarity=0.075 Sum_probs=143.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEec---------------------CCcEEEEEEcc-CCCccEEEEEeCCeEEE
Q 005235 387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI---------------------GEAIQYVAWNP-LPELPVLAVSVGQDVLI 444 (707)
Q Consensus 387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---------------------~~~V~~v~~sp-dg~~~lla~s~d~~V~l 444 (707)
.+.+++++..++.|..|+..++... .+.. ...+.+|++.+ ++ .|+++...+.|..
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l~v~d~~~~i~~ 105 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QLYIVDCYYHLSV 105 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EEEEEETTTEEEE
T ss_pred CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC--cEEEEECCCCEEE
Confidence 4567888889999999998776543 3321 13578999997 66 5777766666777
Q ss_pred EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcC-CCCEEEEEeCC-------
Q 005235 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHR-RGDYLSTVMPA------- 515 (707)
Q Consensus 445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp-~g~~lat~s~d------- 515 (707)
+++.++.. ..+.. ... ........+++.+ +|...++-...
T Consensus 106 ~d~~~g~~-------------------------~~~~~------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 106 VGSEGGHA-------------------------TQLAT------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp ECTTCEEC-------------------------EEEES------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred EeCCCCEE-------------------------EEecc------cCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 77543211 11100 000 0123467899999 89877665321
Q ss_pred -------CCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe--EEEEEeCCCCCeE
Q 005235 516 -------GESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR--LIKKLETGLKEVS 584 (707)
Q Consensus 516 -------g~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~--~~~~l~~~~~~I~ 584 (707)
...+.|..++..++... ...........++|+|++..|+++. .+.|.+|++.... ....+....+ ..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred ceehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence 01247888888766543 2223334556899999999887775 5899999987421 1111211223 78
Q ss_pred EEEEcCCCCEEEEEEC----------CCcEEEEECCCCCcceEEeecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 585 SIAIHPAGDNLIVGSR----------EGKLCWFDMDLSSKPYRVLKCHP----KDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 585 sl~~spdg~~L~sGs~----------Dg~I~vwDl~~~~~~~~~l~~h~----~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.|+++++|.+.++... .+.|..+|.. + +.+..+.... ..++++++ .++.++++....+.|.++
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 8999999987666544 4668888875 3 5566665432 34667776 466777776677888888
Q ss_pred ec
Q 005235 651 HG 652 (707)
Q Consensus 651 d~ 652 (707)
+.
T Consensus 310 ~~ 311 (322)
T 2fp8_A 310 VY 311 (322)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=6.9e-05 Score=78.32 Aligned_cols=244 Identities=10% Similarity=0.035 Sum_probs=143.1
Q ss_pred cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce----------
Q 005235 419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG---------- 488 (707)
Q Consensus 419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~---------- 488 (707)
...+++|.+++ ..+++...++.|..|+..++. +..|........
T Consensus 20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~ 73 (322)
T 2fp8_A 20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSG-------------------------FVDFAYASPYWNKAFCENSTDA 73 (322)
T ss_dssp CCCCEECCTTC-SSEEEECTTSEEEEECCTTTC-------------------------EEEEEESCTTCCHHHHTTCCCG
T ss_pred CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCc-------------------------eEEEecccccccccccccccch
Confidence 45778899988 347777778889888765431 222211100000
Q ss_pred EEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-----cCCCeEEEEEeC-CCCEEEEEeC-
Q 005235 489 IRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHP-TRSIFFVSTK- 559 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fsp-d~~~l~v~sd- 559 (707)
........+..+++.+ +|. |.++...+ .|..++..++... .+ . ....+..+++.+ +|.+.++...
T Consensus 74 ~~~~~~~~p~gi~~~~~~g~-l~v~d~~~---~i~~~d~~~g~~~--~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~ 147 (322)
T 2fp8_A 74 EKRPLCGRTYDISYNLQNNQ-LYIVDCYY---HLSVVGSEGGHAT--QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVST 147 (322)
T ss_dssp GGHHHHCCEEEEEEETTTTE-EEEEETTT---EEEEECTTCEECE--EEESEETTEECSCEEEEEECTTTCCEEEEESCS
T ss_pred hccccCCCCceEEEcCCCCc-EEEEECCC---CEEEEeCCCCEEE--EecccCCCCcccccceEEEecCCCEEEEECCcc
Confidence 0001123578899997 555 44454434 5788887654322 22 1 123578899999 9977665432
Q ss_pred -----------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCC-cceEEee
Q 005235 560 -----------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSS-KPYRVLK 620 (707)
Q Consensus 560 -----------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~-~~~~~l~ 620 (707)
+.|..||..+++...... .......|+++|+|+.|+++ +..+.|.+|++.... .....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE
T ss_pred cccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE
Confidence 678999987776433222 22345679999999876665 556899999987421 1122222
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 621 CHPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 621 ~h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
...+ ...+++.++|.++++... .+.|.+++ .. +.. +..+..........+..+++. ++
T Consensus 227 ~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d------~~-G~~---~~~~~~~~g~~~~~~~~~~~~-~g 294 (322)
T 2fp8_A 227 KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD------EF-GNI---LEVIPLPPPFAGEHFEQIQEH-DG 294 (322)
T ss_dssp ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC------TT-SCE---EEEEECCTTTTTSCCCEEEEE-TT
T ss_pred eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC------CC-CCE---EEEEECCCCCccccceEEEEe-CC
Confidence 2223 788999999997777654 45677773 21 222 334433221001126777773 55
Q ss_pred CEEEEEeCCCcEEEEeC
Q 005235 691 PWLFTAGADSVIRLYCH 707 (707)
Q Consensus 691 ~~L~s~g~Dg~IrlWdl 707 (707)
.++++....+.|..+++
T Consensus 295 ~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 295 LLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEEECSSCSEEEEEEC
T ss_pred EEEEeecCCCceEEEec
Confidence 55555556778888764
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=2.3e-05 Score=91.10 Aligned_cols=192 Identities=14% Similarity=0.065 Sum_probs=119.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc-----------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA-----------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~-----------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.++.|.-+|..||+.+..+..... + ..+++. ++ .+++++.++.|..+|..++..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~dg~l~alD~~tG~~--- 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GD--KVYVGTLDGRLIALDAKTGKA--- 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BT--EEEEECTTSEEEEEETTTCCE---
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CC--EEEEEcCCCEEEEEECCCCCE---
Confidence 35788888899999999999999988865211 1 122332 33 577777889999999887743
Q ss_pred ccccceeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCce
Q 005235 456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLS 531 (707)
Q Consensus 456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~ 531 (707)
+|............. ..++ + .+..+++++..+ ..+.|..+|..+++.
T Consensus 140 -----------------------~W~~~~~~~~~~~~~~~~P~--v----~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 140 -----------------------IWSQQTTDPAKPYSITGAPR--V----VKGKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp -----------------------EEEEECSCTTSSCBCCSCCE--E----ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred -----------------------eeeeccCCCCCcceecCCCE--E----ECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 343321100000000 1111 1 123444443321 124899999988877
Q ss_pred eeeee-cc-C------------------------------CCeEEEEEeCCCCEEEEEe-CC------------------
Q 005235 532 HRIPF-KL-H------------------------------GLPVSSVFHPTRSIFFVST-KK------------------ 560 (707)
Q Consensus 532 ~~~~~-~~-~------------------------------~~V~~v~fspd~~~l~v~s-dg------------------ 560 (707)
. -.+ .. . .....+++.|...++++++ ++
T Consensus 191 ~-W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 191 A-WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp E-EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred E-EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 6 444 10 0 0112478889888888876 44
Q ss_pred -eEEEEECCCCeEEEEEeCC--C-------CCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcce
Q 005235 561 -NIRVYDLLKQRLIKKLETG--L-------KEVSSIAIHPAGD---NLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 561 -~I~iwDl~~~~~~~~l~~~--~-------~~I~sl~~spdg~---~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
.|..+|+.+++.+..++.. . .++....+..+|+ .|++++.+|.++++|..++ +++
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l 337 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLI 337 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEe
Confidence 4999999999999888752 2 2233333444675 6899999999999999988 444
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.45 E-value=0.00057 Score=80.82 Aligned_cols=281 Identities=6% Similarity=-0.034 Sum_probs=174.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec--------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc-----
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR----- 456 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~----- 456 (707)
.+..|+.+ -|.+|+..++........ ...|.++...++| .|.+++.++.|..|+..........
T Consensus 275 ~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 351 (795)
T 4a2l_A 275 RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYK 351 (795)
T ss_dssp CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTS
T ss_pred CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCC
Confidence 45556665 488999888765433211 4679999999998 6888888888999986544221110
Q ss_pred ---cccceeeeccc----ccccCCCCcEEEEecCCccceEEe---------ccCCCeEEEEEcCCCCEEEEEeCCCCccE
Q 005235 457 ---RVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL---------RHFKMVSSVEWHRRGDYLSTVMPAGESRA 520 (707)
Q Consensus 457 ---~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~---------~h~~~V~~v~~sp~g~~lat~s~dg~~~~ 520 (707)
....+.++... +..+..++-+..|+..+....... -....|.+++..++|..|..|+.++ .
T Consensus 352 ~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~---G 428 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG---G 428 (795)
T ss_dssp SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT---E
T ss_pred CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC---c
Confidence 11223333221 455555666777776654332221 1235789999988888555566655 7
Q ss_pred EEEEECCCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC------CCCCeEEEEE
Q 005235 521 IFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET------GLKEVSSIAI 588 (707)
Q Consensus 521 V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~------~~~~I~sl~~ 588 (707)
|.+++..++... .+ . ....|.++...+++.+.+.+. +.|.+||..+++....... ....|.++..
T Consensus 429 l~~~d~~~~~~~--~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 505 (795)
T 4a2l_A 429 LSILHRNSGQVE--NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR 505 (795)
T ss_dssp EEEEETTTCCEE--EECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred eeEEeCCCCcEE--EeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence 999998877653 33 1 235788999888887655544 6699999988765432211 2356999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCcceEEee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235 589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~ 661 (707)
.++|...+ |+. +-|..||..+. .. .+. .....|.++...++|.+.++.. . -|..|+.. +.
T Consensus 506 d~~g~lWi-gt~-~Gl~~~~~~~~-~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~------~~ 572 (795)
T 4a2l_A 506 DSHKRLWI-GGE-EGLSVFKQEGL-DI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEK------DK 572 (795)
T ss_dssp CTTCCEEE-EES-SCEEEEEEETT-EE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETT------TT
T ss_pred CCCCCEEE-EeC-CceEEEeCCCC-eE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCC------CC
Confidence 98887555 445 56888998754 32 222 1235799999999998666544 3 47778532 22
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~ 696 (707)
. +..+....+-....|.++...++|.+.+++
T Consensus 573 ~----~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 573 Q----IKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp E----EEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred c----EEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 1 222221111111228888888888765555
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=9e-05 Score=84.36 Aligned_cols=259 Identities=10% Similarity=0.009 Sum_probs=155.1
Q ss_pred cEEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc--E----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235 389 YLEYKGST-DGTVRIWEV-ESGRCLRVLEIGEA--I----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454 (707)
Q Consensus 389 ~~l~sgs~-DgtVrIWd~-~tg~~l~~l~~~~~--V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~ 454 (707)
..+|.++. ++.|.-+|. .+|+.+..+..... + ..++.. ++ .+++++.++.|..+|..++....
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AG--QIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CC--EEEEEeCCCEEEEEECCCCCEEE
Confidence 46777787 899999999 99999988876221 0 123332 33 57788889999999998886532
Q ss_pred ccccc------ceeeec----ccccccCC------CCcEEEEecCCccceEEeccCCCe---------------------
Q 005235 455 QRRVK------DLLHVE----TPTAPDDN------MASIVSWLQHDKLDGIRLRHFKMV--------------------- 497 (707)
Q Consensus 455 ~~~~~------~v~~~~----~~~~~~~~------d~~i~iW~~~~~~~~~~~~h~~~V--------------------- 497 (707)
..... .+.+.. -.+..+.. ++.+..++..++...-........
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~ 219 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence 21111 111100 00222222 678888888766543211111100
Q ss_pred ------------------EEEEEcCCCCEEEEEeCCC----------C---ccEEEEEECCCCceeeeee--c-cC----
Q 005235 498 ------------------SSVEWHRRGDYLSTVMPAG----------E---SRAIFMHQLSKKLSHRIPF--K-LH---- 539 (707)
Q Consensus 498 ------------------~~v~~sp~g~~lat~s~dg----------~---~~~V~Iwdl~~~~~~~~~~--~-~~---- 539 (707)
..+++.+....+..+..+. . ...|..+|..+++.. -.+ . +.
T Consensus 220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~-W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK-WGYQKTPHDEWDF 298 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE-EEEESSTTCSSCC
T ss_pred ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE-EEecCCCCccccc
Confidence 2356666666666655321 0 136999999998876 444 2 11
Q ss_pred ---CCeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-------------CCe----------------
Q 005235 540 ---GLPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL-------------KEV---------------- 583 (707)
Q Consensus 540 ---~~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-------------~~I---------------- 583 (707)
....-+....+|+ .+++++ +|.+.++|..+++.+..+.... .++
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 1112222334674 456666 7999999999999887765332 111
Q ss_pred ----------EEEEEcCCCCEEEEEE-------------------------------------CCCcEEEEECCCCCcce
Q 005235 584 ----------SSIAIHPAGDNLIVGS-------------------------------------REGKLCWFDMDLSSKPY 616 (707)
Q Consensus 584 ----------~sl~~spdg~~L~sGs-------------------------------------~Dg~I~vwDl~~~~~~~ 616 (707)
..++++|++.+|++.+ .+|.|..||+.++ +..
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~ 457 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAK 457 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEE
Confidence 2467888887877764 2478999999887 444
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
-.+... ..+.+..+...+.+++.++.||.|++||..
T Consensus 458 W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 458 WTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred EEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 444322 223333333345667778999999999543
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=3e-05 Score=78.55 Aligned_cols=182 Identities=8% Similarity=0.074 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE
Q 005235 497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~ 574 (707)
...+.|+ ++..+++.+.+| .|+++|+.+++.. ..+ ...........+.+..|++++ ++.+.+||..+.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g---~v~~iD~~Tgkv~-~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQG---TLRQLSLESAQPV-WME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTT---EEEECCSSCSSCS-EEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCC---EEEEEECCCCcEE-eEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3678887 355666666666 7999999999887 555 333444433334556677766 8999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CC---CCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005235 575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HP---KDITNVAFHRSYPLFASCSDDCTAYV 649 (707)
Q Consensus 575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~---~~I~~vafspdg~llaSgs~Dg~I~V 649 (707)
++...... ..+ .++|..|+++..+++|.++|..+. +....+.- +. ..++.+.|. +|.++|..-.+..|.+
T Consensus 131 ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 99854321 233 357888888888899999999887 55555542 21 245677877 7777777767788999
Q ss_pred EecccccCCCCCCcccceEEeeCC---------CCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 650 FHGMVYSDLNQNPLIVPLEILRGH---------TSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 650 wd~~~~~Dl~~~~~~~pl~~l~gh---------~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
. |..++.. +..+.-. ......-.+.|||+|++..|+.+|.
T Consensus 206 I------Dp~TG~V---~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 I------DPATGTV---VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp E------CTTTCBE---EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred E------eCCCCcE---EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 8 5555544 2222211 0000112789999998887776664
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.37 E-value=7e-05 Score=75.79 Aligned_cols=191 Identities=8% Similarity=0.035 Sum_probs=123.3
Q ss_pred eEEEEEec--CCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235 409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD 484 (707)
Q Consensus 409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~ 484 (707)
+.+.++.+ ......|.|+ ++ ..+++++..+ .|+++|+.++....
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~------------------------------ 79 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ------------------------------ 79 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE------------------------------
T ss_pred EEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE------------------------------
Confidence 45677777 4556899998 55 3455555555 89999987763210
Q ss_pred ccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235 485 KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIR 563 (707)
Q Consensus 485 ~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~ 563 (707)
..............+.|+.|..+... .+.+.++|..+.+.. ..|...+.-. .+.+++..|+++. .+.|.
T Consensus 80 -----~~~l~~~~FgeGit~~g~~ly~ltw~--~~~v~v~D~~t~~~~-~ti~~~~eG~--glt~dg~~L~~SdGs~~i~ 149 (262)
T 3nol_A 80 -----QIELGKRYFGEGISDWKDKIVGLTWK--NGLGFVWNIRNLRQV-RSFNYDGEGW--GLTHNDQYLIMSDGTPVLR 149 (262)
T ss_dssp -----EEECCTTCCEEEEEEETTEEEEEESS--SSEEEEEETTTCCEE-EEEECSSCCC--CEEECSSCEEECCSSSEEE
T ss_pred -----EEecCCccceeEEEEeCCEEEEEEee--CCEEEEEECccCcEE-EEEECCCCce--EEecCCCEEEEECCCCeEE
Confidence 01111222222222345555555432 249999999999887 7773332222 3345677777766 78899
Q ss_pred EEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC------------CCCE
Q 005235 564 VYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH------------PKDI 626 (707)
Q Consensus 564 iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------------~~~I 626 (707)
++|..+.+.+.++.... ..++.+.|. +|...+..-.++.|.+.|..++ +....+... ....
T Consensus 150 ~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 150 FLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp EECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred EEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCce
Confidence 99999998888876532 335667876 6755544446788999999987 666666532 1356
Q ss_pred EEEEEcCCCCEEEEEeC
Q 005235 627 TNVAFHRSYPLFASCSD 643 (707)
Q Consensus 627 ~~vafspdg~llaSgs~ 643 (707)
+.+||+|++..|...+.
T Consensus 228 NGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCEEEEECC
Confidence 89999998876665553
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.33 E-value=8.2e-05 Score=86.37 Aligned_cols=252 Identities=11% Similarity=0.007 Sum_probs=143.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.|+.|..+|..||+.+..+.... .+.+ ..+ .++ .+++++. ++.|..+|..++...-.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 4578889999999999999999998877621 1111 111 144 4555543 47899999888754221
Q ss_pred cccccee-eeccc---ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC--------------
Q 005235 456 RRVKDLL-HVETP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE-------------- 517 (707)
Q Consensus 456 ~~~~~v~-~~~~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~-------------- 517 (707)
.....-. ...+. +..+ ...|.- ........+......+++.+.+..++.++.++.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~-----~~~~~g--~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~ 266 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREA-----AKTWQG--DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDN 266 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHH-----HTTCCS--SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred ecccCCCCCccccccccccc-----cccCCc--cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 1100000 00000 0000 000000 000000011222345788888888877776541
Q ss_pred --ccEEEEEECCCCceeeeee--c-cC-------CCeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-
Q 005235 518 --SRAIFMHQLSKKLSHRIPF--K-LH-------GLPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL- 580 (707)
Q Consensus 518 --~~~V~Iwdl~~~~~~~~~~--~-~~-------~~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~- 580 (707)
...|..+|..+++.. -.+ . +. .++....+..++. .+++++ +|.++++|..+|+++.......
T Consensus 267 l~~~~v~AlD~~tG~~~-W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 345 (668)
T 1kv9_A 267 LYLSSILAIRPDTGKLA-WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV 345 (668)
T ss_dssp TTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred eeeeeEEEEcCCCCcee-eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 125899999998876 555 2 21 2233333334564 566666 8999999999999885543221
Q ss_pred CCe-----------------------------------EEEEEcCCCCEEEEEE--------------------------
Q 005235 581 KEV-----------------------------------SSIAIHPAGDNLIVGS-------------------------- 599 (707)
Q Consensus 581 ~~I-----------------------------------~sl~~spdg~~L~sGs-------------------------- 599 (707)
.+. ..++++|+...+++..
T Consensus 346 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 425 (668)
T 1kv9_A 346 TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF 425 (668)
T ss_dssp CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred ccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccc
Confidence 010 1267788777666522
Q ss_pred ----------CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 600 ----------REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 600 ----------~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
.+|.|..||+.++ +.+-....+ ..+....+...+.+++.++.||.|++||.
T Consensus 426 ~~~~~~p~~~~~g~l~A~D~~tG-~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 426 ADATDVPAAVVSGALLAWDPVKQ-KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp GGCCCCCGGGCEEEEEEEETTTT-EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccCCCCCCCccceEEEEeCCCC-cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 2378999999988 444444432 23333445556788888999999999954
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.0013 Score=77.62 Aligned_cols=292 Identities=10% Similarity=0.033 Sum_probs=169.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc----
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLE--------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR---- 457 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~--------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~---- 457 (707)
.+..|+.. -|.+||..+++...... ....|.++...++| .|.+++..+.|.+++..+........
T Consensus 223 ~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~ 299 (781)
T 3v9f_A 223 NIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFE 299 (781)
T ss_dssp CEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CE
T ss_pred CEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccc
Confidence 35555555 58899988776543211 14679999998888 57777776778899987654221111
Q ss_pred ------------ccceeeeccc----ccccCCCCcEEEEecCCccceEEe----------ccCCCeEEEEEcCCCCEEEE
Q 005235 458 ------------VKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL----------RHFKMVSSVEWHRRGDYLST 511 (707)
Q Consensus 458 ------------~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~----------~h~~~V~~v~~sp~g~~lat 511 (707)
...+.++..- +..+..++-+..++.......... -....|.++...++|...+
T Consensus 300 ~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi- 378 (781)
T 3v9f_A 300 FIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI- 378 (781)
T ss_dssp EECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE-
T ss_pred cccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE-
Confidence 1122222111 344444555666665543322211 0235688999888887554
Q ss_pred EeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC---CCCCe
Q 005235 512 VMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET---GLKEV 583 (707)
Q Consensus 512 ~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~---~~~~I 583 (707)
|+.++ .|.+++..++... .+ .....|.+++..+++.+.+...++.|..||..+++.. .+.. ....|
T Consensus 379 gt~~~---Gl~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v 452 (781)
T 3v9f_A 379 GTDGG---GINVFENGKRVAI--YNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDV 452 (781)
T ss_dssp EEBSS---CEEEEETTEEEEE--CC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCE
T ss_pred EeCCC---cEEEEECCCCeEE--EccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeE
Confidence 44333 5888887654332 11 1235688998888887555433678999998877643 3321 34579
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235 584 SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-----PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL 658 (707)
Q Consensus 584 ~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-----~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl 658 (707)
.++...++|. |.+|+. +-|..||..++ ......... ...|.++...++|.+.+.....| |..|+.
T Consensus 453 ~~i~~d~~g~-lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~------ 522 (781)
T 3v9f_A 453 RVFYEDKNKK-IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP------ 522 (781)
T ss_dssp EEEEECTTSE-EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT------
T ss_pred EEEEECCCCC-EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC------
Confidence 9999988775 555666 56899998765 222222111 35799999999998766544345 667743
Q ss_pred CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.+.. +..+..........|.++...++|.+.++.. .|.|..|+
T Consensus 523 ~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 523 DMQL----VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp TCCE----EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred CCCe----EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 2221 2222211111112388999988888555443 55535443
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0013 Score=77.67 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=170.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEe-------c--------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLE-------I--------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~-------~--------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~ 453 (707)
..+..|+..+-|.+++..++....... . ...|.++...++| .|.+++.++-|..++.......
T Consensus 269 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~ 346 (781)
T 3v9f_A 269 NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH 346 (781)
T ss_dssp SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE
T ss_pred CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce
Confidence 456667775568889988776443222 1 4679999999988 6888888888999987755321
Q ss_pred hcc-----------cccceeeeccc----ccccCCCCcEEEEecCCccceEE----eccCCCeEEEEEcCCCCEEEEEeC
Q 005235 454 EQR-----------RVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIR----LRHFKMVSSVEWHRRGDYLSTVMP 514 (707)
Q Consensus 454 ~~~-----------~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~----~~h~~~V~~v~~sp~g~~lat~s~ 514 (707)
... ....+.++... +..++..+-+..++..+...... ......|.++...++|...+ |+.
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~ 425 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY 425 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET
T ss_pred eeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec
Confidence 111 11222222211 33444344566666553322111 12245688998888887655 454
Q ss_pred CCCccEEEEEECCCCceeeeeec----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC-----CCCeEE
Q 005235 515 AGESRAIFMHQLSKKLSHRIPFK----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG-----LKEVSS 585 (707)
Q Consensus 515 dg~~~~V~Iwdl~~~~~~~~~~~----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~-----~~~I~s 585 (707)
++ .|..++..++... .+. ....|.++...+++.+ .+|+.+.|.+||..+++........ ...|.+
T Consensus 426 ~~---Gl~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~l-wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 426 LG---NISYYNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKI-WIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp TE---EEEEECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEE-EEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred cC---CEEEEcCCCCcEE--EeccCCCCCCeEEEEEECCCCCE-EEEECCceEEEeCCCCeEEecccCcccccccceeEE
Confidence 44 7888888766543 331 3467889988887764 4455577999998876544332222 356999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235 586 IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN 661 (707)
Q Consensus 586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~ 661 (707)
+...++|.+. +|+..+-|..||..+. .+..+.. ....|.++...++|.+.++.. .|.|..|+. .+.
T Consensus 500 i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~------~~~ 569 (781)
T 3v9f_A 500 IAQDSEGRFW-IGTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA------RNF 569 (781)
T ss_dssp EEECTTCCEE-EEESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT------TTC
T ss_pred EEEcCCCCEE-EEEcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC------CCC
Confidence 9999888654 4565445888888654 2333431 135689999999998666544 665477743 222
Q ss_pred CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
. +..+....+-....|.++...++|.+.+++ ..|
T Consensus 570 ~----~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G 603 (781)
T 3v9f_A 570 D----YQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG 603 (781)
T ss_dssp C----CEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC
T ss_pred c----EEEccccCCCCCceEEEEEECCCCCEEEEc-CCc
Confidence 2 222221111111127788888888755543 445
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.24 E-value=0.0017 Score=68.89 Aligned_cols=214 Identities=12% Similarity=-0.006 Sum_probs=135.1
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
...|+..++........+.....+.+|+|.+... .|+.+. ..+.|..+++....
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~-~ly~~D~~~~~I~r~~~~g~~------------------------ 106 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN------------------------ 106 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS------------------------
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEecccc-EEEEEeccCCceEEEecCCCC------------------------
Confidence 3458888887666555555566789999997663 455444 45667777654331
Q ss_pred cEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 476 SIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 476 ~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
... ..........+++.+.+..|..+... .+.|.+.++...... ..+ ........++++|.+..
T Consensus 107 -----------~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 107 -----------VEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp -----------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTE
T ss_pred -----------ceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCe
Confidence 111 11122345788888765555444432 238999998766543 333 44467889999998777
Q ss_pred EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
|+.+. . +.|..+++........+.........|+|+|++..|..+. ..++|..+|++.. .....+........++
T Consensus 173 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi 251 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAI 251 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEE
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEE
Confidence 77765 4 7899999875432222233445689999998777666554 4678999998743 3233333334456778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 005235 630 AFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 630 afspdg~llaSgs~Dg~I~Vwd 651 (707)
++ ..+.++++-...+.|..++
T Consensus 252 av-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 252 TV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EE-ETTEEEEEETTTTEEEEEE
T ss_pred EE-ECCEEEEecCCCCeEEEEE
Confidence 88 3556666666677787775
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.22 E-value=0.0011 Score=71.52 Aligned_cols=216 Identities=12% Similarity=0.005 Sum_probs=137.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
....|+..++..+.....+.....+.+|+|.+.+. .|+.+. ..+.|..+++.....
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~~g~~~---------------------- 150 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSNV---------------------- 150 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCE----------------------
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCC-eEEEEeCCCCcEEEEecCCCCc----------------------
Confidence 33568888988766655555567789999998663 454443 456677776543211
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
.. ...........+++.+.+..|..+... .+.|.+.++...... ..+ ........++++|.+..
T Consensus 151 ---~~---------~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 151 ---EE---------VVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp ---EE---------EECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTE
T ss_pred ---EE---------EEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCe
Confidence 00 111122345678888766555544432 238888888765443 333 44467899999998887
Q ss_pred EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235 554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKCHPKDITNV 629 (707)
Q Consensus 554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v 629 (707)
|+.+. . +.|..+++........+.....+...|+|+|++..|..+ +..+.|..+|++.. .....+........++
T Consensus 216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~gi 294 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAI 294 (386)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEE
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEE
Confidence 77765 4 789999987543333333445668999999877666655 45677999998743 3333333334456788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 005235 630 AFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 630 afspdg~llaSgs~Dg~I~Vwd 651 (707)
++ ..+.++++-...+.|..++
T Consensus 295 av-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 295 TV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EE-ETTEEEEEETTTTEEEEEE
T ss_pred EE-ECCEEEEeeCCCCeEEEEE
Confidence 88 4556666766778888885
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.22 E-value=0.0016 Score=74.06 Aligned_cols=287 Identities=9% Similarity=-0.053 Sum_probs=161.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR- 457 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~- 457 (707)
..+|.++.++.|.-+|..||+.+..+...... ..++.. ++ .+++++.++.|..+|..++.......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~~--~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GD--KVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TT--EEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-CC--EEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 46666666445999999999999888762211 222332 33 58888889999999998886532111
Q ss_pred ----------ccceeeecc-----cccccC------CCCcEEEEecCCccceEEeccCC---------------------
Q 005235 458 ----------VKDLLHVET-----PTAPDD------NMASIVSWLQHDKLDGIRLRHFK--------------------- 495 (707)
Q Consensus 458 ----------~~~v~~~~~-----~~~~~~------~d~~i~iW~~~~~~~~~~~~h~~--------------------- 495 (707)
...++.-.- .+..+. .++.+..++..++...-......
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 111111110 111221 25677777766554322111100
Q ss_pred ---------------------CeEEEEEcCCCCEEEEEeCC------------C---------CccEEEEEECCCCceee
Q 005235 496 ---------------------MVSSVEWHRRGDYLSTVMPA------------G---------ESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 496 ---------------------~V~~v~~sp~g~~lat~s~d------------g---------~~~~V~Iwdl~~~~~~~ 533 (707)
.-..+++.+....++.+..+ + ....|..+|..+++..
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~- 304 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK- 304 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE-
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE-
Confidence 00134666777777766632 1 0148999999999877
Q ss_pred eee--c-cCC-------CeEEEEEe-CCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC--CCe-------------
Q 005235 534 IPF--K-LHG-------LPVSSVFH-PTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL--KEV------------- 583 (707)
Q Consensus 534 ~~~--~-~~~-------~V~~v~fs-pd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~--~~I------------- 583 (707)
-.+ . +.. ...-+... .+|+ .+++++ +|.++++|..+++++..+.... .+.
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 555 2 211 11112222 4664 666777 8999999999999887765432 111
Q ss_pred ------------------------------EEEEEcCCCCEEEEEE---------------------------------C
Q 005235 584 ------------------------------SSIAIHPAGDNLIVGS---------------------------------R 600 (707)
Q Consensus 584 ------------------------------~sl~~spdg~~L~sGs---------------------------------~ 600 (707)
..++++|+...+++.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 1346666655555543 2
Q ss_pred CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 601 EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 601 Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
+|.|.-||+.++. .+-....+. .+..-.....+.+++.|+.||.++.||. .++.. +-.++..... .
T Consensus 465 ~G~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~------~tG~~---lW~~~~~~g~---~ 530 (582)
T 1flg_A 465 VGSLRAMDPVSGK-VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDA------KSGKE---LWKFQTGSGI---V 530 (582)
T ss_dssp SEEEEEECTTTCC-EEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEET------TTCCE---EEEEECSSCC---C
T ss_pred cceEEEEECCCCC-EEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEEC------CCCCE---EEEecCCCCc---c
Confidence 5789999998884 333333221 2222122224667778999999999954 44444 4444433321 0
Q ss_pred eeEEEEcCCCCEE
Q 005235 681 VMDCKFHPRQPWL 693 (707)
Q Consensus 681 V~~l~fspdg~~L 693 (707)
..-+.|..+|+..
T Consensus 531 a~P~~y~~~G~qY 543 (582)
T 1flg_A 531 SPPITWEQDGEQY 543 (582)
T ss_dssp SCCEEEEETTEEE
T ss_pred cCceEEEECCEEE
Confidence 1226676777743
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.21 E-value=0.00084 Score=69.56 Aligned_cols=213 Identities=10% Similarity=0.021 Sum_probs=125.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC-C--eEEEEECCCCCchhcccccceeee
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-Q--DVLILNTGLGNEEEQRRVKDLLHV 464 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-~--~V~lwd~~~~~~~~~~~~~~v~~~ 464 (707)
+.++++....+.|..|+... .....+.....+.+|++.++| .++++... + .|..++..++...
T Consensus 43 g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG--~l~vad~~~~~~~v~~~d~~~g~~~----------- 108 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGTVE----------- 108 (306)
T ss_dssp SCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSCEE-----------
T ss_pred CCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC--cEEEEeccCCcceEEEEcCCCCeEE-----------
Confidence 34666666788999999764 455555567789999999999 36655533 2 3666665443211
Q ss_pred cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee--------e
Q 005235 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP--------F 536 (707)
Q Consensus 465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~--------~ 536 (707)
.+... ........++..+.+..+++-...+ .|.++|...+...... .
T Consensus 109 -------------~~~~~---------~~~~~~~g~~~~~~~~~~v~d~~~g---~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 109 -------------TLLTL---------PDAIFLNGITPLSDTQYLTADSYRG---AIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp -------------EEEEC---------TTCSCEEEEEESSSSEEEEEETTTT---EEEEEETTTTEEEEEEECGGGSCSS
T ss_pred -------------EEEeC---------CCccccCcccccCCCcEEEEECCCC---eEEEEeCCCCcEeEEEECCcccccc
Confidence 01111 1111223444444444444433445 8888887654221010 0
Q ss_pred --ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 537 --KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 537 --~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
..-.....+ +|++..|+++. .+.|.+|++.. ++. ...+... .....|+++++|.++++....+.|.+||.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 111234455 88888888876 68999999874 321 1122111 34567899999988777777889999997
Q ss_pred CCCCcceE--EeecCCCCEEEEEEc---CCCCEEEEEeCC
Q 005235 610 DLSSKPYR--VLKCHPKDITNVAFH---RSYPLFASCSDD 644 (707)
Q Consensus 610 ~~~~~~~~--~l~~h~~~I~~vafs---pdg~llaSgs~D 644 (707)
. + +... .+.......++++|. |++..|+.++..
T Consensus 241 ~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 241 D-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T-C-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C-C-CEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5 3 3322 223233568999998 887765555443
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.21 E-value=0.00013 Score=73.79 Aligned_cols=185 Identities=9% Similarity=0.011 Sum_probs=121.2
Q ss_pred eEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235 409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL 486 (707)
Q Consensus 409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~ 486 (707)
+.+.++.+ ......|.|+. + ..+++.+.++.|+++|+.++....
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~-------------------------------- 89 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVW-------------------------------- 89 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSE--------------------------------
T ss_pred EEEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEe--------------------------------
Confidence 56677776 45568999984 3 345555566789999988764321
Q ss_pred ceEEeccCCCe--EEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 487 DGIRLRHFKMV--SSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 487 ~~~~~~h~~~V--~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.. ..... ..+++ .|+.|..+. .++ .+.++|..+.+.. ..|...+.-..++ +++..|+++. ++.|
T Consensus 90 --~~--l~~~~FgeGit~--~g~~Ly~ltw~~~---~v~V~D~~Tl~~~-~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l 157 (268)
T 3nok_A 90 --ME--RLGNIFAEGLAS--DGERLYQLTWTEG---LLFTWSGMPPQRE-RTTRYSGEGWGLC--YWNGKLVRSDGGTML 157 (268)
T ss_dssp --EE--ECTTCCEEEEEE--CSSCEEEEESSSC---EEEEEETTTTEEE-EEEECSSCCCCEE--EETTEEEEECSSSEE
T ss_pred --EE--CCCCcceeEEEE--eCCEEEEEEccCC---EEEEEECCcCcEE-EEEeCCCceeEEe--cCCCEEEEECCCCEE
Confidence 01 11122 22444 344444443 344 9999999999887 7773333323444 5678888877 7999
Q ss_pred EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------CC
Q 005235 563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------PK 624 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~~ 624 (707)
.++|..+.+.+.++.... ..++.|.|. +|...+..-.+..|.+.|..++ +.+..+... ..
T Consensus 158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTC
T ss_pred EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCC
Confidence 999999999888877532 245777877 6754444445788999999987 666666532 13
Q ss_pred CEEEEEEcCCCC-EEEEE
Q 005235 625 DITNVAFHRSYP-LFASC 641 (707)
Q Consensus 625 ~I~~vafspdg~-llaSg 641 (707)
..+.|||+|++. +|++|
T Consensus 236 vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEcCCCCEEEEeC
Confidence 578999999766 55554
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.20 E-value=0.00079 Score=76.85 Aligned_cols=261 Identities=9% Similarity=-0.026 Sum_probs=154.7
Q ss_pred cEEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc------------EEEEEEccCCCcc----EEEEEeCCeEEEEECCCC
Q 005235 389 YLEYKGST-DGTVRIWEV-ESGRCLRVLEIGEA------------IQYVAWNPLPELP----VLAVSVGQDVLILNTGLG 450 (707)
Q Consensus 389 ~~l~sgs~-DgtVrIWd~-~tg~~l~~l~~~~~------------V~~v~~spdg~~~----lla~s~d~~V~lwd~~~~ 450 (707)
..+|.++. ++.|.-+|. .+|+.+..+..... ...++++|.+. . +++++.++.|..+|..++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g-~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDG-KTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCS-SSCCEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCC-cceeEEEEEcCCCEEEEEECCCC
Confidence 46777787 899999999 99999988876221 12355644332 4 888888999999999888
Q ss_pred Cchhccccc------ceeeec----ccccccC------CCCcEEEEecCCccceEEeccCCCe-----------------
Q 005235 451 NEEEQRRVK------DLLHVE----TPTAPDD------NMASIVSWLQHDKLDGIRLRHFKMV----------------- 497 (707)
Q Consensus 451 ~~~~~~~~~------~v~~~~----~~~~~~~------~d~~i~iW~~~~~~~~~~~~h~~~V----------------- 497 (707)
......... .+.+.. -.+..+. .++.+..++..++...-........
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 653221111 111100 0022222 3688888888766553211111110
Q ss_pred ----------------------EEEEEcCCCCEEEEEeCCCC-------------ccEEEEEECCCCceeeeee--ccC-
Q 005235 498 ----------------------SSVEWHRRGDYLSTVMPAGE-------------SRAIFMHQLSKKLSHRIPF--KLH- 539 (707)
Q Consensus 498 ----------------------~~v~~sp~g~~lat~s~dg~-------------~~~V~Iwdl~~~~~~~~~~--~~~- 539 (707)
..+++.+....++.++.++. ...|..+|..+++.. -.+ .+.
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-W~~q~~~~d 300 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-FGYQKTPHD 300 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-EEEESSTTC
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-eEeecCCCc
Confidence 13456667777776665420 137999999998876 555 211
Q ss_pred C-------CeEEEEEe-CCC---CEEEEEe-CCeEEEEECCCCeEEEEEeCCC-------------CCe-----------
Q 005235 540 G-------LPVSSVFH-PTR---SIFFVST-KKNIRVYDLLKQRLIKKLETGL-------------KEV----------- 583 (707)
Q Consensus 540 ~-------~V~~v~fs-pd~---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-------------~~I----------- 583 (707)
. ...-+... .+| +.++.++ +|.+.++|..+++++....... .++
T Consensus 301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 380 (599)
T 1w6s_A 301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH 380 (599)
T ss_dssp SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence 1 11112222 567 4566666 8999999999999887765321 111
Q ss_pred ---------------EEEEEcCCCCEEEEEE---------------------------------------CCCcEEEEEC
Q 005235 584 ---------------SSIAIHPAGDNLIVGS---------------------------------------REGKLCWFDM 609 (707)
Q Consensus 584 ---------------~sl~~spdg~~L~sGs---------------------------------------~Dg~I~vwDl 609 (707)
..++++|+..+|++.. ..|.|.-||+
T Consensus 381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~ 460 (599)
T 1w6s_A 381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA 460 (599)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence 2456777766665532 3467888888
Q ss_pred CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.++. .+-.... ..++.+-.+...+.+++.++.||.++.||..
T Consensus 461 ~tG~-~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 461 ITGD-YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp TTCC-EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCC-EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence 8874 3333321 1112211122346677779999999999543
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.17 E-value=0.00059 Score=68.32 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred eEEEEEec--CCcEEEEEEccCCCccEEEEE-eC--CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC
Q 005235 409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VG--QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH 483 (707)
Q Consensus 409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d--~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~ 483 (707)
+.+.++.+ ......+.|++ + .|+.++ .. +.|+.+|+.++...
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~--~LyestG~~g~S~v~~vD~~tgkv~------------------------------ 56 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-G--HLYESTGETGRSSVRKVDLETGRIL------------------------------ 56 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-T--EEEEEECCTTSCEEEEEETTTCCEE------------------------------
T ss_pred EEEEEcCCCCccccccEEEEC-C--EEEEECCCCCCceEEEEECCCCCEE------------------------------
Confidence 56677777 56788999987 4 355444 43 48999998876331
Q ss_pred CccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235 484 DKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI 562 (707)
Q Consensus 484 ~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I 562 (707)
.................++.|...... .+.+.++|..+.+.. ..|...+.-..++ +++..|+++. ++.|
T Consensus 57 -----~~~~l~~~~fgeGi~~~~~~ly~ltw~--~~~v~v~D~~tl~~~-~ti~~~~~Gwglt--~dg~~L~vSdgs~~l 126 (243)
T 3mbr_X 57 -----QRAEVPPPYFGAGIVAWRDRLIQLTWR--NHEGFVYDLATLTPR-ARFRYPGEGWALT--SDDSHLYMSDGTAVI 126 (243)
T ss_dssp -----EEEECCTTCCEEEEEEETTEEEEEESS--SSEEEEEETTTTEEE-EEEECSSCCCEEE--ECSSCEEEECSSSEE
T ss_pred -----EEEeCCCCcceeEEEEeCCEEEEEEee--CCEEEEEECCcCcEE-EEEeCCCCceEEe--eCCCEEEEECCCCeE
Confidence 011111222222222234555544432 249999999999887 7773333333444 5677777776 7899
Q ss_pred EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------CC
Q 005235 563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------PK 624 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~~ 624 (707)
.++|..+.+.+.++.... ..++.|.+. +|..++..-.+..|.+.|..++ +.+..+... ..
T Consensus 127 ~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 127 RKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSS
T ss_pred EEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCC
Confidence 999999998888887532 346677776 6655544446778999999987 666665521 13
Q ss_pred CEEEEEEcCCCCEEEEEe
Q 005235 625 DITNVAFHRSYPLFASCS 642 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs 642 (707)
..+.|||+|++..|...+
T Consensus 205 vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC
Confidence 578999999877555544
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.17 E-value=0.00019 Score=81.73 Aligned_cols=244 Identities=10% Similarity=0.008 Sum_probs=143.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQ 455 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~ 455 (707)
...+|.++.|+.|..+|..+|+.+..+.... .+.+ .... ++ .+++++. ++.|..+|..++...-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4578888999999999999999998877532 2221 1111 44 4666655 68999999998865221
Q ss_pred ccccc-e---------------------------------------eeecc----c-ccccCC----------------C
Q 005235 456 RRVKD-L---------------------------------------LHVET----P-TAPDDN----------------M 474 (707)
Q Consensus 456 ~~~~~-v---------------------------------------~~~~~----~-~~~~~~----------------d 474 (707)
..... . ....+ . +..+.. .
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 11000 0 00000 0 111111 1
Q ss_pred CcEEEEecCCccceEEe---ccC-------CCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeeeee--cc-
Q 005235 475 ASIVSWLQHDKLDGIRL---RHF-------KMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL- 538 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~---~h~-------~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~- 538 (707)
+.+..++..++...-.. .|. ....-+....+|+ .++.++.+| .+.+.|..+++.. ..+ ..
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~~-w~~~~~~~ 347 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNG---ILYTLNRENGNLI-VAEKVDPA 347 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTS---EEEEEETTTCCEE-EEEESSTT
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCc---EEEEEECCCCCEE-eeecccCC
Confidence 24777777665543221 111 1111122234674 566777777 9999999888765 333 11
Q ss_pred C-----------CCe--------------------------EEEEEeCCCCEEEEEe-----------------------
Q 005235 539 H-----------GLP--------------------------VSSVFHPTRSIFFVST----------------------- 558 (707)
Q Consensus 539 ~-----------~~V--------------------------~~v~fspd~~~l~v~s----------------------- 558 (707)
. .++ ..++|+|+..+|++.+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 0 011 2467888887777653
Q ss_pred ---------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235 559 ---------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623 (707)
Q Consensus 559 ---------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~ 623 (707)
++.|..||+.+++.+.++.... .+.+..+...+..+++|+.||.|+.||..++ +.+..+....
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~ 505 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPS 505 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCC-CEEEEEeCCC
Confidence 3689999999999888876442 2222222334678888999999999999988 5565565332
Q ss_pred C-CEEEEEEcCCCCEEEE
Q 005235 624 K-DITNVAFHRSYPLFAS 640 (707)
Q Consensus 624 ~-~I~~vafspdg~llaS 640 (707)
. .-..+.|..+|.+++.
T Consensus 506 ~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcEeeeEEEEECCEEEEE
Confidence 2 1122445567774443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.14 E-value=0.0017 Score=69.93 Aligned_cols=197 Identities=10% Similarity=0.003 Sum_probs=121.4
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL 568 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~ 568 (707)
.....+..++|++.+..|..+... .+.|..+++...... ..+ ........+++.+.+..|+.+. .+.|.++++.
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~-~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCEE-EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred cCCCccEEEEEecCCCeEEEEeCC--CCcEEEEecCCCCcE-EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 344568899999877666655543 248999999876544 333 3344567899998777776665 5889999987
Q ss_pred CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE-EEEEeCCC
Q 005235 569 KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL-FASCSDDC 645 (707)
Q Consensus 569 ~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l-laSgs~Dg 645 (707)
.......+.........|+++|.+.+|+.... . +.|..++++.. .........-..-+.|+|+|++.. +++-+..+
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 54433333344466899999997776665543 3 67999998743 222223333345789999986654 44555667
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|..++. ..... ...+...... ...+++. .+..+++....+.|..++
T Consensus 269 ~I~~~d~------dG~~~---~~~~~~~~~~----P~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 269 VIERANL------DGSHR---KAVISQGLPH----PFAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEECT------TSCSC---EEEECSSCSS----EEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEEEEeC------CCCee---EEEEECCCCC----ceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 8888853 22211 1112222222 6777773 344445555566666554
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.14 E-value=0.0042 Score=64.74 Aligned_cols=199 Identities=9% Similarity=-0.066 Sum_probs=118.9
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC---ceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEE
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK---LSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVY 565 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~---~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iw 565 (707)
.....+..++|++.+..|..+... .+.|..+++... ......+ .....+..+++.+.+..|+++. .+.|.++
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 344567899999877766665543 248999998761 2220223 2334668999998776676664 6899999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCCEEE-EE
Q 005235 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE--GKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYPLFA-SC 641 (707)
Q Consensus 566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D--g~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~lla-Sg 641 (707)
++........+.........++++|.+.+|+..... +.|..++++.. ....+. ..-...+.+++++++..|. +-
T Consensus 105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 987554333344344668999999977666655543 68999998643 233332 2335678999998766554 44
Q ss_pred eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
+..+.|..++.. .... ..+....+.... ...+++. .+..+++....+.|..++
T Consensus 183 ~~~~~I~~~d~d------g~~~-~~~~~~~~~~~~----P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 183 SKLHSISSIDVN------GGNR-KTILEDEKRLAH----PFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TTTTEEEEEETT------SCSC-EEEEECTTTTSS----EEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEecC------CCce-EEEeecCCccCC----cEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 466789998642 2111 011111111111 5677774 344445555566676654
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=8.1e-05 Score=87.65 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=115.9
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCC--ccEEEEEECCCC-ceeeeeeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEE
Q 005235 496 MVSSVEWH-RRGDYLSTVMPAGE--SRAIFMHQLSKK-LSHRIPFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVY 565 (707)
Q Consensus 496 ~V~~v~~s-p~g~~lat~s~dg~--~~~V~Iwdl~~~-~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iw 565 (707)
.+...+|| |+|++||.+...++ ...|+++|+.++ ......+. .....++|+|+++.|+... + ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57789999 99999987765331 236999999988 53211221 1235688999998877665 4 368889
Q ss_pred ECCCCe--EEEEEe-CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcce--EEee-cCCCCEEEEEEcCCCC
Q 005235 566 DLLKQR--LIKKLE-TGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDLSSKPY--RVLK-CHPKDITNVAFHRSYP 636 (707)
Q Consensus 566 Dl~~~~--~~~~l~-~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~~~~~~--~~l~-~h~~~I~~vafspdg~ 636 (707)
++.++. ....+. .......++.|+|||++|+..+. ...|.++|+.++.... ..+. .......++.|+..+.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 988753 122333 23345678999999999887663 3458889998652223 4443 3345556666665444
Q ss_pred EEEEEeCC--CcEEEEecccccCCCCCCcccceEE-eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 637 LFASCSDD--CTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 637 llaSgs~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+++....+ +..+||.+ ++.+... ... +..|... ..+.++.+. .+.++++...+|..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~----d~~~~~~---~~~~li~~~~~--~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIA----PRGQPSD---WSHVLVDHSED--VFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEE----ETTSTTC---CCCEEECCCSS--EEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEE----cCCCccc---ceeeEECCCCC--cEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 55555444 44444433 2221111 112 2223221 125556664 23455677778876655
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.11 E-value=0.0021 Score=68.21 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=102.9
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK 569 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~ 569 (707)
....+..++|++.+..|..+... .+.|..+++...... ..+ ........+++.+.+..|+.+. .+.|.++++..
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~-~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEeccccEEEEEecc--CCceEEEecCCCCce-EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 34557899999877766665543 248999998876544 333 3345567899998777776665 68999999875
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CC-CcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEE-EEEeCCC
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGS-RE-GKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLF-ASCSDDC 645 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~D-g~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~ll-aSgs~Dg 645 (707)
......+.........|+++|.+..|.... .. +.|..++++.. ....+ ...-..-+.++|+|++..| ++-+..+
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 433333334445689999999766655544 44 78999998743 23333 2223457899999866644 4445567
Q ss_pred cEEEEec
Q 005235 646 TAYVFHG 652 (707)
Q Consensus 646 ~I~Vwd~ 652 (707)
.|..++.
T Consensus 226 ~I~~~~~ 232 (349)
T 3v64_C 226 VIERANL 232 (349)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 8888854
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.10 E-value=0.012 Score=61.31 Aligned_cols=215 Identities=8% Similarity=0.012 Sum_probs=136.0
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235 398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476 (707)
Q Consensus 398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~ 476 (707)
..|+..++.++.....+.....+.+++|.+.+. .|+.+. ..+.|..+++..... +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~-~ly~~D~~~~~I~~~~~~g~~~----------------------~- 65 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHG----------------------V- 65 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC-----------------------------
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCC-EEEEEECCCCcEEEEECCCCCC----------------------C-
Confidence 469999998877666666667789999998763 455544 457888877654100 0
Q ss_pred EEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 477 IVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 477 i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
..... .......+..+++.+.+..|..+ ...+ .|.+.++...... ..+ ........++++|.+..
T Consensus 66 --------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~---~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 66 --------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG---TVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGF 133 (316)
T ss_dssp ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT---EEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTE
T ss_pred --------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCC---EEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCE
Confidence 00001 11122345788888755555444 3334 8999998765443 223 34467889999997777
Q ss_pred EEEEe--C-CeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEe-ec--CCCC
Q 005235 554 FFVST--K-KNIRVYDLLKQRLIKKL-ETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVL-KC--HPKD 625 (707)
Q Consensus 554 l~v~s--d-g~I~iwDl~~~~~~~~l-~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l-~~--h~~~ 625 (707)
|+.+. . +.|..+++... ....+ .........|+++|++..|..+. ..+.|..+|++.. . .+.+ .. .-..
T Consensus 134 ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~~~~~~~~ 210 (316)
T 1ijq_A 134 MYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAH 210 (316)
T ss_dssp EEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSS
T ss_pred EEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-c-eEEEeecCCccCC
Confidence 77665 3 68988988643 33333 23446789999999877776654 5578999999743 2 2333 21 1234
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 626 ITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 626 I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
..++++. .+.++++-...+.|..++.
T Consensus 211 P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 211 PFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred cEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 5678885 4566667767788888864
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.06 E-value=0.0013 Score=71.97 Aligned_cols=242 Identities=12% Similarity=0.131 Sum_probs=136.7
Q ss_pred cEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 419 AIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 419 ~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
...+|+|.|+ ....|+++...+.|+.+++.++ ....+.......
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------------~v~~~~~~~~~P 184 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------------YVDIKTTNIGQC 184 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------------EEEEECCCCSCE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------------EEEEeecCCCCc
Confidence 3567888874 1114665554466777765433 111222334568
Q ss_pred EEEEEcCCCCEEEEEeCCCC-ccEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235 498 SSVEWHRRGDYLSTVMPAGE-SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIK 574 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~-~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~ 574 (707)
..|+|+++|+.+++...... ...+...+..........+........++++| ++.++++-. ++.|+.+|..++....
T Consensus 185 ~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 185 ADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp EEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred cEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 89999999994444432111 11233333322221101222334567789999 555444433 6889999998776633
Q ss_pred EE-eC-CCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc---eEEeecC---------------CCCEEEEEE--
Q 005235 575 KL-ET-GLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP---YRVLKCH---------------PKDITNVAF-- 631 (707)
Q Consensus 575 ~l-~~-~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~---~~~l~~h---------------~~~I~~vaf-- 631 (707)
.+ .. .......|+|+|+|++|.++ ...++|..++++..... ...+.+. -..-..+++
T Consensus 265 ~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 265 EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 33 22 22334679999999955554 45678999887632111 1222221 123567899
Q ss_pred -------cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-------C-------CCCCeeEEEEc-CC
Q 005235 632 -------HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-------S-------NGRGVMDCKFH-PR 689 (707)
Q Consensus 632 -------spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-------~-------~~~gV~~l~fs-pd 689 (707)
.++|.++++-...+.|+.++. .+. +.++.|... . .-..-..|+++ ++
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-------~G~----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-------EGR----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-------TSE----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-------CCC----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 777888877777788998842 111 223332211 0 00126789999 66
Q ss_pred CCEEEEEeCCCcEEEEe
Q 005235 690 QPWLFTAGADSVIRLYC 706 (707)
Q Consensus 690 g~~L~s~g~Dg~IrlWd 706 (707)
+.++++-...+.|+..+
T Consensus 414 g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp TEEEEEEGGGTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEe
Confidence 66666666677888775
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=0.0018 Score=70.92 Aligned_cols=203 Identities=11% Similarity=0.122 Sum_probs=114.4
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECC
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~ 568 (707)
.......|+|+++|++|+++...+. ...+.+.+..........+........++++| ++.++++-. .+.|..|+..
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4456889999999996666654321 12344444333222102232334567889999 555444443 6899999998
Q ss_pred CCeEEEEEeC-CCCCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcc---eEEeecC---------------CCCEE-
Q 005235 569 KQRLIKKLET-GLKEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSSKP---YRVLKCH---------------PKDIT- 627 (707)
Q Consensus 569 ~~~~~~~l~~-~~~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~~~---~~~l~~h---------------~~~I~- 627 (707)
.+........ ...+...|+|+|+|++|++ -...++|..++.+..... ..++.+. -..-.
T Consensus 257 ~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~ 336 (430)
T 3tc9_A 257 TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQ 336 (430)
T ss_dssp TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEE
T ss_pred CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcc
Confidence 7765333322 2246789999999995554 456778999887632111 1222221 00122
Q ss_pred EEEEc--------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-----CC--C-------CCCCeeEEE
Q 005235 628 NVAFH--------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----TS--S-------NGRGVMDCK 685 (707)
Q Consensus 628 ~vafs--------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~~--~-------~~~gV~~l~ 685 (707)
.++.. ++|.++++-...+.|+.++. .+. +..+.+. .+ . .-..-..|+
T Consensus 337 gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-------~G~----v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gia 405 (430)
T 3tc9_A 337 GTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-------QGR----VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIV 405 (430)
T ss_dssp EEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-------TSE----EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEE
T ss_pred eEEEccccccccCCCCeEEEEECCCcEEEEECC-------CCc----EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEE
Confidence 45543 34666666666677888741 111 2222221 00 0 001278999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEe
Q 005235 686 FHPR-QPWLFTAGADSVIRLYC 706 (707)
Q Consensus 686 fspd-g~~L~s~g~Dg~IrlWd 706 (707)
++|+ +.++++-...+.|+.++
T Consensus 406 vd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 406 YDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EETTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEc
Confidence 9995 55555555667788765
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.03 E-value=0.0013 Score=66.60 Aligned_cols=201 Identities=11% Similarity=0.122 Sum_probs=125.0
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL 568 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~ 568 (707)
+-...+..++|+|+++.|+++... ...|...|+. +... ..+ ......-.+++.+++.++++.- ++.+.++++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~--~~~I~~ld~~-g~v~-~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINK--PAAIVEMTTN-GDLI-RTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEET--TEEEEEEETT-CCEE-EEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CcccCcceeEEeCCCCEEEEEECC--CCeEEEEeCC-CCEE-EEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 555679999999987766665543 3489999998 5554 444 4446788999998887555543 6889999886
Q ss_pred CCe---EEEEEe------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCCcceEEee-------cCCCCEEEEE
Q 005235 569 KQR---LIKKLE------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD--LSSKPYRVLK-------CHPKDITNVA 630 (707)
Q Consensus 569 ~~~---~~~~l~------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~--~~~~~~~~l~-------~h~~~I~~va 630 (707)
... .+.... ........|+|+|.++.|.++.......+|.++ .....+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 233332 123446899999999888887776665566554 1112233331 1234578999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 631 FHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTS--SNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 631 fspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~--~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
|+|... +++.......+.++ |.... . +-...|. +..+ ..-..--.|+|.++|. |+.++..+.+..+
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~------d~~g~-~-~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEV------TLVGE-V-IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEE------CTTCC-E-EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEE------cCCCC-E-EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 999654 55555566778888 43332 1 1222333 2111 0001268899999998 5555776666555
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.017 Score=62.33 Aligned_cols=220 Identities=7% Similarity=0.014 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA 475 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 475 (707)
...|+..++........+.....+.+|+|.+.+. .|+.+. ..+.|..+++......
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~---------------------- 147 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGV---------------------- 147 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC----------------------------
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCC----------------------
Confidence 3678999988776655555577889999998663 455444 4567777775432100
Q ss_pred cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235 476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF 554 (707)
Q Consensus 476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l 554 (707)
................+++.+.+..|+.+... .+.|.+.++...... ..+ ........++++|.+.+|
T Consensus 148 --------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 148 --------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCSEE-EEEECSSCCEEEEEEETTTTEE
T ss_pred --------CcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCceE-EEEeCCCCCcceEEEecccCeE
Confidence 00000111233467788998855555554432 248999998876554 333 445568999999987777
Q ss_pred EEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeec--CCCCEEE
Q 005235 555 FVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKC--HPKDITN 628 (707)
Q Consensus 555 ~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~--h~~~I~~ 628 (707)
+.+. .+.|...++........+.....+...|+++|++..|..+. ..+.|..+|++.. .....+.. .-....+
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFS 295 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEE
Confidence 7765 36899999875433333344446789999998887776664 4578999999744 32223332 1234557
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEec
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+++. .+.++.+-...+.|..++.
T Consensus 296 l~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 296 LAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEEe-CCEEEEecCCCCeEEEEEc
Confidence 7773 3456666667788888863
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.02 E-value=0.0017 Score=71.07 Aligned_cols=234 Identities=10% Similarity=0.011 Sum_probs=139.4
Q ss_pred CCCCCCCcccCC-CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-----eEEEEECC
Q 005235 375 LPSRKDLKPYPV-ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-----DVLILNTG 448 (707)
Q Consensus 375 lp~~~~l~pfp~-~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-----~V~lwd~~ 448 (707)
|..|..+..-|. ....||.+...+.|+.++..++.....+.......+|+|+++|. |+++...+ .+..++..
T Consensus 138 ~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 138 FDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEECGG
T ss_pred cCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEECC
Confidence 334444444342 22344444433889999998887765544466789999999993 66665432 12222110
Q ss_pred CCCchhcccccceeeecccccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEEC
Q 005235 449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQL 526 (707)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl 526 (707)
. ... ............+++++ +|..+++-..++ .|..++.
T Consensus 216 ~-----------------------------------~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~---~V~~~d~ 257 (433)
T 4hw6_A 216 S-----------------------------------GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHA---MISSYDP 257 (433)
T ss_dssp G-----------------------------------TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCS---EEEEECT
T ss_pred C-----------------------------------CeeccccccccCCCCEEEEeCCCCeEEEEECCCC---EEEEEEC
Confidence 0 000 01111234556788999 666555544444 8999998
Q ss_pred CCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCeE--EEEEeCC---------------CCCe
Q 005235 527 SKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQRL--IKKLETG---------------LKEV 583 (707)
Q Consensus 527 ~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~~--~~~l~~~---------------~~~I 583 (707)
.++......+ ........++|+|++..|+++. .+.|+.+++. ++.. ...+.+. -...
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P 337 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP 337 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence 8665521222 2233345799999999777776 5889998865 2321 1122211 1236
Q ss_pred EEEEE---------cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC------------------CCEEEEEEc-CCC
Q 005235 584 SSIAI---------HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP------------------KDITNVAFH-RSY 635 (707)
Q Consensus 584 ~sl~~---------spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~------------------~~I~~vafs-pdg 635 (707)
..+++ .++|.++++-...++|+.++.. + . +.++.+.. ..-..|+++ +++
T Consensus 338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 414 (433)
T 4hw6_A 338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK 414 (433)
T ss_dssp EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred ccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC
Confidence 77999 7777777777777889999853 3 2 33333221 135678888 667
Q ss_pred CEEEEEeCCCcEEEEe
Q 005235 636 PLFASCSDDCTAYVFH 651 (707)
Q Consensus 636 ~llaSgs~Dg~I~Vwd 651 (707)
.++++-.....|+.++
T Consensus 415 ~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 415 CFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred EEEEEeCCCCEEEEEe
Confidence 7776666677777763
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0022 Score=70.18 Aligned_cols=234 Identities=12% Similarity=0.112 Sum_probs=137.0
Q ss_pred CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-----eEEEEECCC
Q 005235 375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-----DVLILNTGL 449 (707)
Q Consensus 375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-----~V~lwd~~~ 449 (707)
+..|..+..-|.....||.+...+.|+.+|+.++..............|+|+++++ .|+++...+ .+.+++...
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC-EEEEEeCCCCcccceEEEEeCCC
Confidence 34444443333122345555444889999998877655555567789999999993 366555421 222222111
Q ss_pred CCchhcccccceeeecccccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECC
Q 005235 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLS 527 (707)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~ 527 (707)
. .. ............++++| +|..+++-..++ .|..++..
T Consensus 215 ~-----------------------------------~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~---~V~~~~~~ 256 (430)
T 3tc9_A 215 G-----------------------------------FKVITELTKGQNCNGAETHPINGELYFNSWNAG---QVFRYDFT 256 (430)
T ss_dssp T-----------------------------------SCSEEEEEECSSCCCEEECTTTCCEEEEETTTT---EEEEEETT
T ss_pred c-----------------------------------eeeeeeeccCCCceEEEEeCCCCEEEEEECCCC---EEEEEECC
Confidence 0 00 00111133467788999 666555555544 89999998
Q ss_pred CCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeCC---------------CCCeE
Q 005235 528 KKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLETG---------------LKEVS 584 (707)
Q Consensus 528 ~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~~---------------~~~I~ 584 (707)
..... ..+ ........++|+|++.+|+++. .+.|..++... +.. +..+.+. -....
T Consensus 257 ~~~~~-~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 335 (430)
T 3tc9_A 257 TQETT-PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPR 335 (430)
T ss_dssp TTEEE-EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEE
T ss_pred CCcEE-EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCc
Confidence 76542 222 3335678999999999777775 68899987653 322 2222211 01133
Q ss_pred -EEEEc--------CCCCEEEEEECCCcEEEEECCCCCcceEEeecC------------------CCCEEEEEEcC-CCC
Q 005235 585 -SIAIH--------PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH------------------PKDITNVAFHR-SYP 636 (707)
Q Consensus 585 -sl~~s--------pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------------------~~~I~~vafsp-dg~ 636 (707)
.+++. ++|.++++-...++|+.++.. + . +.++.+. -..-+.|+++| ++.
T Consensus 336 ~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G-~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 412 (430)
T 3tc9_A 336 QGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G-R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC 412 (430)
T ss_dssp EEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S-E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred ceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C-c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence 55653 346666666667789888843 3 3 3333321 11467899998 466
Q ss_pred EEEEEeCCCcEEEEe
Q 005235 637 LFASCSDDCTAYVFH 651 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd 651 (707)
++++-.....|+.++
T Consensus 413 lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 413 FFIGDRENRRIRKIG 427 (430)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEEECCCCeEEEEc
Confidence 776666677787774
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.93 E-value=0.0087 Score=62.63 Aligned_cols=189 Identities=12% Similarity=0.114 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEE-EC--CC
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVY-DL--LK 569 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iw-Dl--~~ 569 (707)
+.+..|.+.+++..++++. ++ .|. .....+..- ..+ .....+..+++.|++.+++++..+.+..- |- .+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g---~v~-~S~DgG~tW-~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t 195 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VG---AIY-RTKDSGKNW-QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA 195 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TC---CEE-EESSTTSSE-EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS
T ss_pred CCeEEEEEECCCCEEEEeC-Cc---cEE-EEcCCCCCC-EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc
Confidence 4466777777776666553 33 332 223334333 222 44567899999999988888776655543 32 22
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-c---CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-C---HPKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~---h~~~I~~vafspdg~llaSgs~Dg 645 (707)
-+.+. ......+..+++.+++..+++ +.+|.+++.+.+.+ .....+. . +...+.+++|.+++.+++++. +|
T Consensus 196 W~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g 270 (327)
T 2xbg_A 196 WEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AG 270 (327)
T ss_dssp CEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TT
T ss_pred eeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CC
Confidence 23331 234466889999999876654 56787777643212 2122221 1 224589999999888777664 67
Q ss_pred cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.|..- ...+.....+......... +.++.|.+++ .++.+|.+|+|.-++
T Consensus 271 ~i~~S-------~DgG~tW~~~~~~~~~~~~----~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 271 ALLCS-------QDGGQTWQQDVDVKKVPSN----FYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEE-------SSTTSSCEECGGGTTSSSC----CCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred eEEEe-------CCCCcccEEcCccCCCCCC----eEEEEEECCC-ceEEEcCCceEEEEc
Confidence 66432 1122221111111112222 7888897654 467778899887654
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.91 E-value=0.00087 Score=78.82 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred EEEEEcCCCCEEEEEeCCCC--ccEEEEEECCCCceee-eee--ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECC
Q 005235 498 SSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSKKLSHR-IPF--KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLL 568 (707)
Q Consensus 498 ~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~-~~~--~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~ 568 (707)
..++|+|+|+.|+.+..+.. ...|.+|++.+..... ..+ ........+.|+|+|++|+... ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 46889999998888876532 2478999998765321 233 2234567889999999888754 3568999998
Q ss_pred CC--eE-EEEEeC-CCCCeEEEEEcCCCCEEEE-EECC----CcEEEEECCCCCcceEE-eecCCC--CEEEEEEcCCCC
Q 005235 569 KQ--RL-IKKLET-GLKEVSSIAIHPAGDNLIV-GSRE----GKLCWFDMDLSSKPYRV-LKCHPK--DITNVAFHRSYP 636 (707)
Q Consensus 569 ~~--~~-~~~l~~-~~~~I~sl~~spdg~~L~s-Gs~D----g~I~vwDl~~~~~~~~~-l~~h~~--~I~~vafspdg~ 636 (707)
++ .. +..+.. ......++.|+. |..|+. ...+ ..|..+|+.+. ..... +..|.. .+..+.+. .+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~ 380 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNY 380 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCE
Confidence 75 22 133332 334456666654 555544 4333 25777777642 12223 334444 34555554 234
Q ss_pred EEEEEeCCCcEEEEe
Q 005235 637 LFASCSDDCTAYVFH 651 (707)
Q Consensus 637 llaSgs~Dg~I~Vwd 651 (707)
++++...+|..+||-
T Consensus 381 lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEeCCEEEEEE
Confidence 667777888766663
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.89 E-value=0.013 Score=63.40 Aligned_cols=157 Identities=9% Similarity=-0.024 Sum_probs=104.5
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc----eeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEE
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL----SHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRV 564 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~----~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~i 564 (707)
.....+..|+|++.+..|..+.... +.|..+++.... .. ..+ .....+..+++.+.+..|+.+. .+.|.+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~--~~I~~~~~~g~~~~~~~~-~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQ--RMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTT--TEEEEEEC------CCCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCcceEEeeeeccCceEEEecCC--CeEEEEEcccCCCCCcce-EEEeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 4456788999998777666665432 488888887632 22 233 3456788999998666676665 689999
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-
Q 005235 565 YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC- 641 (707)
Q Consensus 565 wDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg- 641 (707)
.++........+.........|+++|.+.+|+.... .+.|...+++.. .....+...-...+.|++++++..|+.+
T Consensus 186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 999866544444445556899999997777766553 378999998743 3233333333567899999877655554
Q ss_pred eCCCcEEEEec
Q 005235 642 SDDCTAYVFHG 652 (707)
Q Consensus 642 s~Dg~I~Vwd~ 652 (707)
+..+.|..++.
T Consensus 265 ~~~~~I~~~d~ 275 (400)
T 3p5b_L 265 SKLHSISSIDV 275 (400)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEEeC
Confidence 45678888854
No 279
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.86 E-value=0.0013 Score=75.12 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=138.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhccc
Q 005235 390 LEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQRR 457 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~~~ 457 (707)
.+|.++.|+.|.-+|..||+.+....... .+.+ ... -++ .+++++. ++.|+.+|..++...-...
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 38888999999999999999998776532 2221 111 144 4555553 7899999999886522111
Q ss_pred ccc-e-------------------------------------------eeeccc-ccccCC----------------CCc
Q 005235 458 VKD-L-------------------------------------------LHVETP-TAPDDN----------------MAS 476 (707)
Q Consensus 458 ~~~-v-------------------------------------------~~~~~~-~~~~~~----------------d~~ 476 (707)
... . +..... +..+.. ...
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 100 0 000000 111111 136
Q ss_pred EEEEecCCccceEE--e-ccCC-------CeEEEEEc-CCC---CEEEEEeCCCCccEEEEEECCCCceeeeee--cc--
Q 005235 477 IVSWLQHDKLDGIR--L-RHFK-------MVSSVEWH-RRG---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL-- 538 (707)
Q Consensus 477 i~iW~~~~~~~~~~--~-~h~~-------~V~~v~~s-p~g---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~-- 538 (707)
+..++..++...-. . .|.. ...-+... .+| ..++.++.+| .+.+.|..+++.. ..+ ..
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l-w~~~~~~~~ 355 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNG---IVYTLDRTDGALV-SANKLDDTV 355 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTS---EEEEEETTTCCEE-EEEESSTTC
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCc---EEEEEECCCCCEe-ecccccCCc
Confidence 77777776655321 1 1211 11112222 467 4667777777 9999999888765 333 11
Q ss_pred ---------CC-C--------------------------eEEEEEeCCCCEEEEE-------------------------
Q 005235 539 ---------HG-L--------------------------PVSSVFHPTRSIFFVS------------------------- 557 (707)
Q Consensus 539 ---------~~-~--------------------------V~~v~fspd~~~l~v~------------------------- 557 (707)
.+ + -..++|+|+..++++.
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence 11 0 1245677776666553
Q ss_pred ---------------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235 558 ---------------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622 (707)
Q Consensus 558 ---------------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h 622 (707)
..+.|..||+.+++.+.+.......... .+.-.|.+|++|+.|+.|+.||.+++ +.+-.++..
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~gt~dg~l~A~D~~tG-~~lW~~~l~ 513 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYGTLDGYLKARDSDTG-DLLWKFKIP 513 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEECCCCeEEEEECCCC-CEEEEeeCC
Confidence 1367999999999988777533211111 12224678888999999999999998 555555533
Q ss_pred CC-CEEEEEEcCCCCE
Q 005235 623 PK-DITNVAFHRSYPL 637 (707)
Q Consensus 623 ~~-~I~~vafspdg~l 637 (707)
.. ...-+.|..+|++
T Consensus 514 ~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 514 SGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp SCCCSCCEEEEETTEE
T ss_pred CCcEeccEEEEeCCEE
Confidence 32 1223556667763
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.85 E-value=0.00051 Score=79.42 Aligned_cols=262 Identities=9% Similarity=0.007 Sum_probs=139.7
Q ss_pred CCcEEEEEeCCC-----------cEEEEeCCCCeEEE--EEec--CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCC
Q 005235 387 ACYLEYKGSTDG-----------TVRIWEVESGRCLR--VLEI--GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGL 449 (707)
Q Consensus 387 ~~~~l~sgs~Dg-----------tVrIWd~~tg~~l~--~l~~--~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~ 449 (707)
++.+++.|+.+. .+.+||..+++... .+.. .....++++..++ .|++.+. +..+.+||+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCEEEEEGGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCceEEecCcC
Confidence 566777776543 58899998876432 2222 2233457778888 3444443 44788888654
Q ss_pred CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCC--CccEEEEEEC
Q 005235 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAG--ESRAIFMHQL 526 (707)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg--~~~~V~Iwdl 526 (707)
. .|..-.. + .....-.+++..++|+.++.|+ .++ ....+.+||.
T Consensus 275 ~----------------------------~W~~~~~----~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 275 D----------------------------SWIPGPD----M-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp T----------------------------EEEECCC----C-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred C----------------------------ceeECCC----C-CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 3 2321110 0 1111113455667899999888 343 1247899999
Q ss_pred CCCceeee------eeccCCCeEEEEEeCCCCEEEEE----------eCCeEEEEECCCCeEEEEEeCCC---------C
Q 005235 527 SKKLSHRI------PFKLHGLPVSSVFHPTRSIFFVS----------TKKNIRVYDLLKQRLIKKLETGL---------K 581 (707)
Q Consensus 527 ~~~~~~~~------~~~~~~~V~~v~fspd~~~l~v~----------sdg~I~iwDl~~~~~~~~l~~~~---------~ 581 (707)
.+...... ++..... ..++..++..++.+ ....+..||..+........... .
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~--~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADK--QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCT--TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccc--cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence 87764411 1100000 01122233333333 23567899998775443332221 1
Q ss_pred CeEEEEEc-CCCCEEEEEECCC-----------cEEEEECCCCCcceEEee---cCCCC-EEEEEEcCCCCEEEEEeCC-
Q 005235 582 EVSSIAIH-PAGDNLIVGSREG-----------KLCWFDMDLSSKPYRVLK---CHPKD-ITNVAFHRSYPLFASCSDD- 644 (707)
Q Consensus 582 ~I~sl~~s-pdg~~L~sGs~Dg-----------~I~vwDl~~~~~~~~~l~---~h~~~-I~~vafspdg~llaSgs~D- 644 (707)
.-.++.+. .++..+++|+.++ .|.+||..+. . ...+. -+... -.+++..|++.+++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 23445554 3677888887543 5778887654 2 22221 12222 2345667899999998854
Q ss_pred ----------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235 645 ----------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA 698 (707)
Q Consensus 645 ----------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~ 698 (707)
..+.+||... +. ...+..+..... +...+.+.|+++.++.||.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t------~~-W~~~~~~~~~R~----~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQ------DT-FYKQNPNSIVRV----YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGG------TE-EEECCCCSSCCC----TTEEEEECTTSCEEEEECC
T ss_pred CcCcCCCCcccceEEEcCCC------Cc-eeecCCCCCccc----cccHhhcCCCcEEEecCCC
Confidence 4678886432 11 001111111111 1334556799999999885
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.81 E-value=0.015 Score=60.67 Aligned_cols=222 Identities=9% Similarity=0.056 Sum_probs=133.8
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecc
Q 005235 390 LEYKGSTDGTVRIWEVESGR--CLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVET 466 (707)
Q Consensus 390 ~l~sgs~DgtVrIWd~~tg~--~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~ 466 (707)
++++. ...|+..++.... ....+.....+.+|+|.+.+. .|+.+. ..+.|..+++......
T Consensus 7 ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~-~lyw~D~~~~~I~r~~~~g~~~~------------- 70 (318)
T 3sov_A 7 LLYAN--RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESV------------- 70 (318)
T ss_dssp EEEEC--EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGT-EEEEEETTTTEEEEEETTSSSCC-------------
T ss_pred EEEEc--cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCC-EEEEEECCCCcEEEEEccCCCce-------------
Confidence 44443 4568999987653 222233334577899998653 444443 4566777765433100
Q ss_pred cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235 467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS 545 (707)
Q Consensus 467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v 545 (707)
.............+++.+.+..|..+... .+.|.+.++...... ..+ ........+
T Consensus 71 --------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~-~l~~~~~~~P~gi 127 (318)
T 3sov_A 71 --------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLRK-VLFWQELDQPRAI 127 (318)
T ss_dssp --------------------CEEEEECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSSEEEE
T ss_pred --------------------EEEEcCCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCcEE-EEEeCCCCCccEE
Confidence 00111222456788888755555444332 238999998765443 333 445678899
Q ss_pred EEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeec
Q 005235 546 VFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKC 621 (707)
Q Consensus 546 ~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~ 621 (707)
+++|.+..|+.+. .+.|..+++........+...-...+.|+|+|++..|..+ +..+.|..+|++.. .....+..
T Consensus 128 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~ 206 (318)
T 3sov_A 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKG 206 (318)
T ss_dssp EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECS
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecC
Confidence 9999877777765 3788888886433222233344568999999977766655 45678999999743 22222332
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
......++++.. +.++.+-...+.|..++.
T Consensus 207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 207 SLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp CCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 334566777753 455666666778888865
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.0047 Score=68.41 Aligned_cols=202 Identities=12% Similarity=0.158 Sum_probs=118.3
Q ss_pred CCeEEEEE-------cCCCCEEEEEeCCCC----ccEEEEEECCC-Cceee----eeeccCCCeEEEEEeCCCCEEEEEe
Q 005235 495 KMVSSVEW-------HRRGDYLSTVMPAGE----SRAIFMHQLSK-KLSHR----IPFKLHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 495 ~~V~~v~~-------sp~g~~lat~s~dg~----~~~V~Iwdl~~-~~~~~----~~~~~~~~V~~v~fspd~~~l~v~s 558 (707)
.....|+| +++|++|+++...+. ...|.+.+... +.... ..+........++++|++..|+++.
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35789999 999997777765541 23466665433 11110 1222223456789999766666665
Q ss_pred --CCeEEEEECC-------CCeE-----------EEE-Ee-CCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc
Q 005235 559 --KKNIRVYDLL-------KQRL-----------IKK-LE-TGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP 615 (707)
Q Consensus 559 --dg~I~iwDl~-------~~~~-----------~~~-l~-~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~ 615 (707)
++.|..+|+. ++.. ... +. +...+...|+|+|+|++|.++ +...+|+.++.+.....
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 6889999987 4543 222 22 233557899999999965554 55678988776532111
Q ss_pred e---EEeecC---C------------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235 616 Y---RVLKCH---P------------KDIT-NVAFH-------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669 (707)
Q Consensus 616 ~---~~l~~h---~------------~~I~-~vafs-------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~ 669 (707)
+ .++.+. . ..-. .++.. +.|.++++-+....|+.++. .+ . +.+
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-------~G-~---v~T 414 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-------EG-I---VST 414 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-------TC-B---EEE
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-------CC-C---EEE
Confidence 1 223221 0 1133 44554 56677777777788888841 12 1 334
Q ss_pred eeCCCC------------CC--------CCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235 670 LRGHTS------------SN--------GRGVMDCKFHPR-QPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 670 l~gh~~------------~~--------~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl 707 (707)
+.|... .+ -..-..|+++++ +.++++=...+.||.+++
T Consensus 415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 433210 00 012678999997 666666666778888763
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.77 E-value=0.014 Score=60.90 Aligned_cols=155 Identities=11% Similarity=-0.045 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR 571 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~ 571 (707)
..+..++|++.+..|..+... .+.|..+++.........+ ..-..+..+++.+.+..|+.+. .+.|.++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETT--TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECC--CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 356789999866666555432 2489999988764321223 3335677899998776666664 6899999987543
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAY 648 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~ 648 (707)
....+.........++++|.+.+|+.... .+.|..++++.. .....+...-..-+.++|++++..| ++=+..+.|.
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 32223344466899999997777766653 578999998743 2222222223456899999966644 4445667888
Q ss_pred EEec
Q 005235 649 VFHG 652 (707)
Q Consensus 649 Vwd~ 652 (707)
.++.
T Consensus 192 ~~d~ 195 (318)
T 3sov_A 192 KSNL 195 (318)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8854
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0081 Score=63.19 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=123.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccC----CCc-cEEEEE-e---CCeEEEEECCCCCchhcccc
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL----PEL-PVLAVS-V---GQDVLILNTGLGNEEEQRRV 458 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spd----g~~-~lla~s-~---d~~V~lwd~~~~~~~~~~~~ 458 (707)
.++++.....+-+.+||+ +|+.+..+.. +.++.|..-|+ |.. -+++++ . +++|.+|++......+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l---- 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL---- 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE----
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce----
Confidence 346666677788999999 8999988865 67888887773 211 033333 3 4678888653211100
Q ss_pred cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE--cCC-CC-EEEEEeCCCCccEEEEEECC---CC--
Q 005235 459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW--HRR-GD-YLSTVMPAGESRAIFMHQLS---KK-- 529 (707)
Q Consensus 459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~--sp~-g~-~lat~s~dg~~~~V~Iwdl~---~~-- 529 (707)
... ..... .+..-...+..+|+ ++. +. |+++...+| .+..|++. .+
T Consensus 114 -------------------~~i--~~~~~-pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G---~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 114 -------------------QSM--TDPDH-PIATAINEVYGFTLYHSQKTGKYYAMVTGKEG---EFEQYELKADKNGYI 168 (355)
T ss_dssp -------------------EEC--SCTTS-CEECCCSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSCE
T ss_pred -------------------eec--ccccc-CcCCCCCCeeEEEEEecCCCCcEEEEEECCCC---eEEEEEEEeCCCCcc
Confidence 000 00000 00011145666776 664 44 566666666 88888873 22
Q ss_pred --ceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-----CCeEEEEEe-CCC-CCeEEEEE--cCCCC-EEE
Q 005235 530 --LSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-----KQRLIKKLE-TGL-KEVSSIAI--HPAGD-NLI 596 (707)
Q Consensus 530 --~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-----~~~~~~~l~-~~~-~~I~sl~~--spdg~-~L~ 596 (707)
+.. +.|...+.+..++..+....|+++- +..|..|+.. +++++..+. ++. ..+..|++ .++|+ +|+
T Consensus 169 ~~~lV-R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 169 SGKKV-RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp EEEEE-EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred cceEE-EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 223 5566677899999999999999998 6668888855 345665542 222 35888888 56666 676
Q ss_pred EEE-CCCcEEEEECCCCCcceEEee
Q 005235 597 VGS-REGKLCWFDMDLSSKPYRVLK 620 (707)
Q Consensus 597 sGs-~Dg~I~vwDl~~~~~~~~~l~ 620 (707)
+++ .+.++.+||.....+.+..|.
T Consensus 248 vSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEcCCCCEEEEEECCCCCcEEEEEE
Confidence 666 567899999973335556663
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.66 E-value=0.055 Score=63.61 Aligned_cols=221 Identities=7% Similarity=0.016 Sum_probs=135.9
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
....|+..++..+.....+.....+.+|+|.+... .|+.+. ..+.|+.+++......
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~-~lY~sD~~~~~I~~~~l~g~~~~--------------------- 459 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGV--------------------- 459 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC---------------------------
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCC-eeEEeeccceeEEEEeccCCCCC---------------------
Confidence 34568888887666555555567788999988653 344444 4466777665431000
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI 553 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~ 553 (707)
+....++.........|++.+.+..|+.+... .+.|.+.++...... ..+ ........|+++|.+.+
T Consensus 460 ---------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 460 ---------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp -----------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTE
T ss_pred ---------cceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCC
Confidence 00001111234556789998877666655542 349999999866543 333 44566899999998777
Q ss_pred EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecC--CCCEE
Q 005235 554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCH--PKDIT 627 (707)
Q Consensus 554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~ 627 (707)
|+.+. . +.|.+.++........+.....+...|++++.+..|+.+. ..++|..++++.. .....+... -....
T Consensus 528 LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~ 606 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPF 606 (791)
T ss_dssp EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEE
T ss_pred EEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCC
Confidence 77765 3 6799999875444433444446799999998777776664 4567999998744 333333321 22345
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEec
Q 005235 628 NVAFHRSYPLFASCSDDCTAYVFHG 652 (707)
Q Consensus 628 ~vafspdg~llaSgs~Dg~I~Vwd~ 652 (707)
+|++.. +.++++-...+.|...+.
T Consensus 607 glav~~-~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 607 SLAVFE-DKVFWTDIINEAIFSANR 630 (791)
T ss_dssp EEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEEeC-CEEEEEECCCCEEEEEeC
Confidence 666643 345555556677777753
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.0051 Score=64.20 Aligned_cols=155 Identities=8% Similarity=0.051 Sum_probs=108.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeecc-----CC--CeEEEEE---eCCCCEEEEEe----
Q 005235 494 FKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKL-----HG--LPVSSVF---HPTRSIFFVST---- 558 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~--~V~~v~f---spd~~~l~v~s---- 558 (707)
..-..+++|++....|..++ ..+ +|..|+...+......+.. .. .+..+.| .|++.+++++.
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g---~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKG---RIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTT---EEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCC---EEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 34456889998666666666 556 9999999865543133322 11 3578999 68877777543
Q ss_pred ----------CCeEEEEECC---CCeEEEEEeC-------------CCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q 005235 559 ----------KKNIRVYDLL---KQRLIKKLET-------------GLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDL 611 (707)
Q Consensus 559 ----------dg~I~iwDl~---~~~~~~~l~~-------------~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~ 611 (707)
++.|..||+. +++.+....- .......|++.++|+..++++.. +.|..++.+.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 4779999999 7776655431 11247899999999999999998 8888887763
Q ss_pred CCcceEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235 612 SSKPYRVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 612 ~~~~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~ 653 (707)
. ....+- ......+.++++|+|.+|++....|.+..||+.
T Consensus 169 ~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 K--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp C--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred C--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 2 233221 112236799999999988887779999999654
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.61 E-value=0.0034 Score=71.44 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE-EEEEEcCCCCE
Q 005235 559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI-TNVAFHRSYPL 637 (707)
Q Consensus 559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I-~~vafspdg~l 637 (707)
.+.|..||+.+++.+.+...+. .+.+-.+...|.++++|+.||.|+.||.+++ +.+-.++.....+ .-+.|..+|++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCCCcccCceEEEECCEE
Confidence 4789999999999887776442 2211112224678888999999999999988 5566665433221 23566677774
Q ss_pred EE
Q 005235 638 FA 639 (707)
Q Consensus 638 la 639 (707)
++
T Consensus 543 Yv 544 (582)
T 1flg_A 543 YL 544 (582)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.59 E-value=0.0024 Score=73.71 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=110.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEE
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVY 565 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iw 565 (707)
.....++++..+|..+++|+.++ ..+.+||..+...... .+.....-.++++.++++++++|+ + ..+.+|
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~--~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSST--TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred CCccccccCCCCCCEEEeCCCCC--CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 33445678888999999998654 3799999987754311 122222334566778899888876 2 579999
Q ss_pred ECCCCeEEEEEeCC-CCCe----EEEEEcCCCCEEEEEECCC---------cEEEEECCCCCcceEEeecCC--------
Q 005235 566 DLLKQRLIKKLETG-LKEV----SSIAIHPAGDNLIVGSREG---------KLCWFDMDLSSKPYRVLKCHP-------- 623 (707)
Q Consensus 566 Dl~~~~~~~~l~~~-~~~I----~sl~~spdg~~L~sGs~Dg---------~I~vwDl~~~~~~~~~l~~h~-------- 623 (707)
|+.+++-.. +... ..+. ....+..++..++.|+.+| .+.+||..+.. ....+..+.
T Consensus 320 d~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 320 SPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp ETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCC
T ss_pred CCCCCccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCC
Confidence 998876432 2100 0000 0012234555566665554 46788887653 222222111
Q ss_pred -CCEEEEEEcC-CCCEEEEEeCCC-----------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235 624 -KDITNVAFHR-SYPLFASCSDDC-----------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690 (707)
Q Consensus 624 -~~I~~vafsp-dg~llaSgs~Dg-----------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg 690 (707)
..-.++.|.. ++.+++.|+.++ .|.+| |..++.- ..+.+..-...+.-.+++..|++
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~y------d~~~~~W----~~~~~~~mp~~R~~~~~~~l~~g 467 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG------EPGTSPN----TVFASNGLYFARTFHTSVVLPDG 467 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC------STTSCCE----EEECTTCCSSCCBSCEEEECTTS
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcC------CCCCCCe----eEEccCCCCCCcccCCeEECCCC
Confidence 1234555644 677888887532 45666 3333221 11110000001113455677899
Q ss_pred CEEEEEeCC-----------CcEEEEe
Q 005235 691 PWLFTAGAD-----------SVIRLYC 706 (707)
Q Consensus 691 ~~L~s~g~D-----------g~IrlWd 706 (707)
.+++.||.+ ..+.+||
T Consensus 468 ~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 468 STFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp CEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred CEEEECCcccCcCcCCCCcccceEEEc
Confidence 999999865 4577776
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.57 E-value=0.042 Score=64.58 Aligned_cols=161 Identities=9% Similarity=-0.020 Sum_probs=104.7
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---eeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeE
Q 005235 489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---SHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNI 562 (707)
Q Consensus 489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I 562 (707)
.+......+..|+|++.+..|+.+... .+.|+.+++.... .....+ .....+..|++.+.+..|+++. .+.|
T Consensus 418 ~l~~~~~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 418 SLIPNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eeecCCCceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 344455678899999866666555443 2488888887632 110233 3456678999999888788776 6899
Q ss_pred EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235 563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS 640 (707)
.+.++........+.........|+++|.+.+|+.... . ++|.+.+++.. .....+...-...+.|++.+.+..|+.
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEE
Confidence 99999865443334445566899999998767666553 2 67999998743 322333333356889999987665555
Q ss_pred E-eCCCcEEEEec
Q 005235 641 C-SDDCTAYVFHG 652 (707)
Q Consensus 641 g-s~Dg~I~Vwd~ 652 (707)
+ +....|..+++
T Consensus 575 aD~~~~~I~~~d~ 587 (791)
T 3m0c_C 575 VDSKLHSISSIDV 587 (791)
T ss_dssp EETTTTEEEEEET
T ss_pred EeCCCCcEEEEec
Confidence 4 44567888753
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.51 E-value=0.009 Score=60.32 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=104.3
Q ss_pred eee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235 534 IPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609 (707)
Q Consensus 534 ~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl 609 (707)
.++ +....+..++|+|++..|++.+ ++.|..+|+. ++.++++. .+......|++.++|.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 355 5556899999999887777655 6889999998 88888775 33356889999988877676556788999998
Q ss_pred CCCCc--ceEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC---CCCCCC
Q 005235 610 DLSSK--PYRVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG---HTSSNG 678 (707)
Q Consensus 610 ~~~~~--~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g---h~~~~~ 678 (707)
..... ...... ..+.....++|+|.+..|.++...+...||.+. .+..... +..+.. ......
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~---g~~~~~~---l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN---GLLSSNE---LHISKDKALQRQFTL 172 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE---STTCSSC---CEEEECHHHHHTCCS
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc---ccccCCc---eeeecchhhcccccc
Confidence 76542 122222 123456899999998766666666555666443 1111111 222211 000011
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235 679 RGVMDCKFHPRQPWLFTAG-ADSVIRLYC 706 (707)
Q Consensus 679 ~gV~~l~fspdg~~L~s~g-~Dg~IrlWd 706 (707)
..+.+++++|....|+..+ ....|..+|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d 201 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVT 201 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEc
Confidence 2378999999766554444 444454444
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.42 E-value=0.012 Score=61.40 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=106.7
Q ss_pred cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCC-----C--CCeEEEEE---cCCCCEEEEEEC-----
Q 005235 538 LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETG-----L--KEVSSIAI---HPAGDNLIVGSR----- 600 (707)
Q Consensus 538 ~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~-----~--~~I~sl~~---spdg~~L~sGs~----- 600 (707)
...-..++.|++....|.+++ .++|..||...+........+ . ..++.|.| .|+|+++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 344556889999777787777 899999999866544332222 1 13689999 688878776442
Q ss_pred --------CCcEEEEECC---CCCcceEEee--cC-----------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEecccc
Q 005235 601 --------EGKLCWFDMD---LSSKPYRVLK--CH-----------PKDITNVAFHRSYPLFASCSDD-CTAYVFHGMVY 655 (707)
Q Consensus 601 --------Dg~I~vwDl~---~~~~~~~~l~--~h-----------~~~I~~vafspdg~llaSgs~D-g~I~Vwd~~~~ 655 (707)
+..|..||+. ++ +.+.... .. ......++..++|+..++++.- +.|..++
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~---- 165 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS---- 165 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC----
T ss_pred ccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe----
Confidence 6779999998 66 3333222 11 1247899999999999988877 7766663
Q ss_pred cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235 656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707 (707)
Q Consensus 656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl 707 (707)
...... .+.. +.........|.+.|+++|+|..|+.....|.|..+|+
T Consensus 166 --pdG~~~-~~~~-~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 166 --ADGKTV-STFA-WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp --TTSCCE-EEEE-ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred --CCCCEE-eeee-ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 222211 1111 11111111245889999999999988877998888774
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.42 E-value=0.11 Score=59.27 Aligned_cols=201 Identities=7% Similarity=-0.047 Sum_probs=114.7
Q ss_pred CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCC
Q 005235 373 PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRC-LRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGL 449 (707)
Q Consensus 373 p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~-l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~ 449 (707)
+.+..|..+...+..+.++++-...+.|..+++..... ...+.. -.....|++.+.+. .|+.+. ..+.|.+.++..
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~-~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTS
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC-EEEEEeCCCCEEEEEECCC
Confidence 34444444444445555555655667788888765432 222222 35788899988653 344443 456777776543
Q ss_pred CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC
Q 005235 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK 528 (707)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~ 528 (707)
. ....+. ..-.....|++.|.+.+|..+.... ...|...++..
T Consensus 116 ~-----------------------------------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~-~~~I~r~~~dG 159 (619)
T 3s94_A 116 S-----------------------------------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE-VPKIERAGMDG 159 (619)
T ss_dssp C-----------------------------------SCEEEECSSCSCCCCEEEETTTTEEEEEECSS-SCEEEEEETTS
T ss_pred C-----------------------------------CEEEEEeCCCCCCceEEEecCCCeEEEeccCC-CCEEEEEECCC
Confidence 2 111111 2334577899999766665554321 23777777776
Q ss_pred Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 005235 529 KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC 605 (707)
Q Consensus 529 ~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~ 605 (707)
.... ..+ ..-.....+++++++..|+++. .+.|..+|+........+.+......+|++..+ ..+++-...+.|.
T Consensus 160 ~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~ 237 (619)
T 3s94_A 160 SSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSIL 237 (619)
T ss_dssp CSCE-EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEE
T ss_pred CceE-EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEE
Confidence 5443 233 3445788999999888888876 588999998754333222222233456777654 3444445567899
Q ss_pred EEECCCC
Q 005235 606 WFDMDLS 612 (707)
Q Consensus 606 vwDl~~~ 612 (707)
..|..++
T Consensus 238 ~~d~~tg 244 (619)
T 3s94_A 238 ACNKYTG 244 (619)
T ss_dssp EEESSSC
T ss_pred EEECCCC
Confidence 9998765
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.39 E-value=0.042 Score=57.33 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=94.0
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 005235 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ 570 (707)
Q Consensus 493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~ 570 (707)
+...+..+++.+++.+++++.... .++-.|-. +..- ..+ .....+..+++.+++.+++++.+|.+++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~---~~~S~d~g-G~tW-~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGS---FYSTWEPG-QTAW-EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS 235 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSS---EEEEECTT-CSSC-EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCc---EEEEeCCC-CCce-eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC
Confidence 445688899999988887664322 33333321 2221 222 4456788999999998877776888887753334
Q ss_pred eEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEEEeC
Q 005235 571 RLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 571 ~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaSgs~ 643 (707)
+.-..+.. ....+.++++.+++..+++|. +|.| ++..+.+ .-...+.. +...+.+|.|.+++. +++++.
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 43333322 123588999998887777665 6666 4445544 44554442 245678899986554 556678
Q ss_pred CCcEEEEe
Q 005235 644 DCTAYVFH 651 (707)
Q Consensus 644 Dg~I~Vwd 651 (707)
+|.|.-++
T Consensus 312 ~G~i~~~~ 319 (327)
T 2xbg_A 312 KGILLRYV 319 (327)
T ss_dssp TTEEEEEC
T ss_pred CceEEEEc
Confidence 89877763
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.38 E-value=0.048 Score=57.66 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=124.4
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV 497 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V 497 (707)
....+|+|.|+| .++++...+.|.+++ .+... . +-+.. .........
T Consensus 31 ~~P~~ia~~pdG--~l~V~e~~g~I~~i~--~g~~~------~------------------~~~~~-----v~~~g~~~p 77 (352)
T 2ism_A 31 EVPWALAFLPDG--GMLIAERPGRIRLFR--EGRLS------T------------------YAELS-----VYHRGESGL 77 (352)
T ss_dssp SCEEEEEECTTS--CEEEEETTTEEEEEE--TTEEE------E------------------EEECC-----CCCSTTCSE
T ss_pred CCceEEEEcCCC--eEEEEeCCCeEEEEE--CCCcc------E------------------eecce-----EeecCCCCc
Confidence 456899999999 588888889999887 22110 0 00000 011123467
Q ss_pred EEEEEcCC---CCEEEEEeCCCC---ccEEEEEECCCCcee-eee----ec--c--CCCeEEEEEeCCCCEEEEEeC---
Q 005235 498 SSVEWHRR---GDYLSTVMPAGE---SRAIFMHQLSKKLSH-RIP----FK--L--HGLPVSSVFHPTRSIFFVSTK--- 559 (707)
Q Consensus 498 ~~v~~sp~---g~~lat~s~dg~---~~~V~Iwdl~~~~~~-~~~----~~--~--~~~V~~v~fspd~~~l~v~sd--- 559 (707)
..|+|+|+ +.+|.++..... ...|..+++...... ... +. . ......++|.|+|.+.++.++
T Consensus 78 ~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~ 157 (352)
T 2ism_A 78 LGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE 157 (352)
T ss_dssp EEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC
T ss_pred eeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC
Confidence 88999998 555444432110 137778887643211 011 21 1 123468999999976555322
Q ss_pred -----------CeEEEEECCCC------------eEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCc--------EEEE
Q 005235 560 -----------KNIRVYDLLKQ------------RLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGK--------LCWF 607 (707)
Q Consensus 560 -----------g~I~iwDl~~~------------~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~--------I~vw 607 (707)
+.|.-++.... .....+..+......++|+| +|.++++-..... |.+.
T Consensus 158 ~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i 237 (352)
T 2ism_A 158 RELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI 237 (352)
T ss_dssp GGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE
T ss_pred CccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe
Confidence 45666665430 01111222224467889999 6665555433333 3333
Q ss_pred ECCC---------------CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc--ccceEEe
Q 005235 608 DMDL---------------SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL--IVPLEIL 670 (707)
Q Consensus 608 Dl~~---------------~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~--~~pl~~l 670 (707)
.... ...+...+. +......++| .+|.++++.-..+.|...+..... .. ......+
T Consensus 238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~ 310 (352)
T 2ism_A 238 VPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER-----GRWRVLRVETA 310 (352)
T ss_dssp CTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET-----TEEEEEEEEEE
T ss_pred ccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC-----cceeecchhee
Confidence 2111 012344443 2345677888 567777766666777776443111 10 0001222
Q ss_pred eCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 671 RGHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 671 ~gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
-.-... +.++++.|||.++++..
T Consensus 311 ~~~~~r----p~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 311 LSGFGR----LREVQVGPDGALYVTTS 333 (352)
T ss_dssp EESSCC----EEEEEECTTSCEEEEEC
T ss_pred cccCCC----eeEEEECCCCcEEEEEe
Confidence 111122 89999999998776654
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.37 E-value=0.00075 Score=78.64 Aligned_cols=174 Identities=9% Similarity=-0.028 Sum_probs=103.2
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC----Cceeeeee-ccCCCeEEEEEeC
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK----KLSHRIPF-KLHGLPVSSVFHP 549 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~----~~~~~~~~-~~~~~V~~v~fsp 549 (707)
..|+..++.+.....+......+..|+|++.+..|+.+... .+.|..+++.+ .... ..+ .....+..+++.+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~--~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT--TTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCC
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC--CCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEe
Confidence 34444554443332233334567789999877777665543 24888888875 2221 222 2233456788887
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCC
Q 005235 550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
.+..|+++. .+.|.++++........+.........|+++|.+.+|+.... . ++|.+++++.. .....+...-..
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~ 541 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW 541 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCC
Confidence 666666654 688999998755443333333345678999997666555443 2 68888888643 222222222234
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235 626 ITNVAFHRSYP-LFASCSDDCTAYVFHG 652 (707)
Q Consensus 626 I~~vafspdg~-llaSgs~Dg~I~Vwd~ 652 (707)
-+.|+|+|++. ++++-+..+.|.++++
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 57899998754 5556566778999854
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.33 E-value=0.075 Score=60.87 Aligned_cols=196 Identities=6% Similarity=-0.073 Sum_probs=118.6
Q ss_pred CCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchh
Q 005235 377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEE 454 (707)
Q Consensus 377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~ 454 (707)
.+..+..-+..+.++++-..++.|..+++..+.....+.. ......|++.+.+. .|+.+. ..+.|.+.++...
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~-~LY~tD~~~~~I~v~~~dG~---- 112 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK-NLYWADTGTNRIEVSKLDGQ---- 112 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTST----
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC-EEEEEECCCCEEEEEecCCC----
Confidence 3333433444555666666778888888765433333332 24566777776553 344433 3456666664322
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
....+. ..-.....|++.|...+|..+... ....|...++......
T Consensus 113 -------------------------------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~- 159 (628)
T 4a0p_A 113 -------------------------------HRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERT- 159 (628)
T ss_dssp -------------------------------TCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCE-
T ss_pred -------------------------------cEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceE-
Confidence 111111 233457899999866666555532 1348888888766543
Q ss_pred eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 534 IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 534 ~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
..+..-.....+++++++..|+.+. .+.|..+|+..... ..+.........|++.. +..+++-...+.|...|..+
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence 3335556788999999988888886 58899999975433 33443445567888864 44444444578899999766
Q ss_pred C
Q 005235 612 S 612 (707)
Q Consensus 612 ~ 612 (707)
+
T Consensus 238 g 238 (628)
T 4a0p_A 238 G 238 (628)
T ss_dssp C
T ss_pred C
Confidence 5
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.33 E-value=0.2 Score=51.88 Aligned_cols=226 Identities=10% Similarity=0.111 Sum_probs=145.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
.+++--+ ..++.|+|+++.+.++.+...+.|..=.|-.+. .++.-.+..|+-|++...
T Consensus 79 ~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~---~L~lVT~taVyHWs~~~~------------------ 136 (365)
T 2xzh_A 79 KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGE------------------ 136 (365)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS---EEEEEESSEEEEEESSTT------------------
T ss_pred cEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC---eEEEEcCCcEEEEcccCC------------------
Confidence 3444433 678999999999999999998999998998776 677777889999997542
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC---CC-CccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP---AG-ESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~---dg-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
...++++++..... ...|.....+++.++++..+- ++ -.+.+.+|..+++.++ .+ +|-+...
T Consensus 137 -----s~P~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ieGhaa~F~ 203 (365)
T 2xzh_A 137 -----SQPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA 203 (365)
T ss_dssp -----CCCEEEEECCGGGT------TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EECCSEEEEE
T ss_pred -----CCCceeeecchhcc------cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc--eeeeeeeeeE
Confidence 34556666544332 345566666777887765543 11 2358899999888775 44 4433222
Q ss_pred EEEEe--CCC-CEEEEEe----CCeEEEEECCCC---------eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235 544 SSVFH--PTR-SIFFVST----KKNIRVYDLLKQ---------RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 544 ~v~fs--pd~-~~l~v~s----dg~I~iwDl~~~---------~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.+.+. +.. .+|+.+. .+.++|.++... +.+..+... ..-.-+|.+++.-..+..-+.-|.|
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~i 283 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 283 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEE
Confidence 22221 111 1333333 268999998432 122222222 3446788899888899999999999
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.+||+.++ .++..-+--...|...+.+....=++.....|.|.--
T Consensus 284 hlyDleTg-t~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 284 HLYDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp EEEETTTC-CEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred EEEEcccC-cEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 99999998 6666566556666655555443334444466655444
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.29 E-value=0.21 Score=61.15 Aligned_cols=311 Identities=12% Similarity=0.098 Sum_probs=163.9
Q ss_pred CCCcccCCCC--cEEEEEeCCCcEEEEeCCC--CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-ch
Q 005235 379 KDLKPYPVAC--YLEYKGSTDGTVRIWEVES--GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN-EE 453 (707)
Q Consensus 379 ~~l~pfp~~~--~~l~sgs~DgtVrIWd~~t--g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~-~~ 453 (707)
....+|++.. .-++ +..++.++|..+.+ .-.++++.....+..++++|... .++++..+. ..++..... ..
T Consensus 695 ~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~-~~~v~~~~~--~~~~~~~~~~~~ 770 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ-CFGVLSSRI--EVQDTSGGTTAL 770 (1158)
T ss_dssp CEEEEECCSSSTTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT-EEEEEEEEE--EEECSSSSEEES
T ss_pred ceEeccCcccCCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC-EEEEEEEec--cccccccccchh
Confidence 3455676532 2233 23456699988764 33556677789999999999874 344433322 112211100 00
Q ss_pred h-----cccccc------------eeeecccccccCCCCcEEEEecCCccceE--EeccCCCeEEEE---EcC-CCCEEE
Q 005235 454 E-----QRRVKD------------LLHVETPTAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVE---WHR-RGDYLS 510 (707)
Q Consensus 454 ~-----~~~~~~------------v~~~~~~~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~---~sp-~g~~la 510 (707)
. ...... .-...|. .......+++.+..+..... .......+.+++ |.. ...+|+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lv 848 (1158)
T 3ei3_A 771 RPSASTQALSSSVSSSKLFSSSTAPHETSFG--EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFI 848 (1158)
T ss_dssp SCCHHHHCSEEEECCCCCC----------CC--CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEE
T ss_pred hhhhhhhhhhhcccccccccccccCchhhcC--CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEE
Confidence 0 000000 0000000 00012345555554333221 222233444444 332 246888
Q ss_pred EEeC------C-CCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEE-EEeCCC
Q 005235 511 TVMP------A-GESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIK-KLETGL 580 (707)
Q Consensus 511 t~s~------d-g~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~-~l~~~~ 580 (707)
+|.. + ...+.|.++++..++.. ... ..++.|++++--. | +|++|-.+.|++|++...+.++ .....
T Consensus 849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v~g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~~~~~~~- 924 (1158)
T 3ei3_A 849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEVKGAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELRTECNHY- 924 (1158)
T ss_dssp EEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEESSCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEEEEEEEC-
T ss_pred EEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEcCCcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEEEEeecc-
Confidence 7762 1 13568999999755433 222 6678899887442 3 7777778999999998765333 11111
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccC-
Q 005235 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSD- 657 (707)
Q Consensus 581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~D- 657 (707)
..|..+.+...|+++++|..-..|.++-.+.....+..+. .+...++++.|--+ ..++.+..+|.|.++.......
T Consensus 925 ~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~ 1003 (1158)
T 3ei3_A 925 NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATT 1003 (1158)
T ss_dssp CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCS
T ss_pred ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCC
Confidence 1233333333588999999888887765543323333333 34567888888654 4677788999999986542110
Q ss_pred CCCCCcccceEEeeCCCCCCCCCeeEEE---EcCC---------CCEEEEEeCCCcEEEE
Q 005235 658 LNQNPLIVPLEILRGHTSSNGRGVMDCK---FHPR---------QPWLFTAGADSVIRLY 705 (707)
Q Consensus 658 l~~~~~~~pl~~l~gh~~~~~~gV~~l~---fspd---------g~~L~s~g~Dg~IrlW 705 (707)
...+........+ |.+. -|+++. +.+. ...++.++.+|.|.+.
T Consensus 1004 ~~~~~~L~~~~~f--hlG~---~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1004 DEERQHLQEVGLF--HLGE---FVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp TTGGGBEEEEEEE--ECSS---CEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred ccccceeeeEEEE--eCCC---cEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 0011121222222 2221 166665 3332 2357888899998764
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.28 E-value=0.065 Score=56.70 Aligned_cols=238 Identities=8% Similarity=-0.049 Sum_probs=126.0
Q ss_pred CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
-....+|+|.|+| .|+++...+.|.+++. .+. . .+ -.+. ........
T Consensus 28 l~~P~~ia~~pdG--~l~V~e~~g~I~~~d~-~G~-~------~~------------------~~~~-----v~~~g~~g 74 (354)
T 3a9g_A 28 LEVPWSIAPLGGG--RYLVTERPGRLVLISP-SGK-K------LV------------------ASFD-----VANVGEAG 74 (354)
T ss_dssp CSCEEEEEEEETT--EEEEEETTTEEEEECS-SCE-E------EE------------------EECC-----CCCSTTCS
T ss_pred CCCCeEEEEcCCC--eEEEEeCCCEEEEEeC-CCc-e------Ee------------------eccc-----eeecCCCc
Confidence 3567899999999 5888888899988862 221 0 00 0000 00112345
Q ss_pred eEEEEEcCC---CCEEEEEeCC--C---CccEEEEEECCCCc--e--eeee---ec--cCCCeEEEEEeCCCCEEEEEeC
Q 005235 497 VSSVEWHRR---GDYLSTVMPA--G---ESRAIFMHQLSKKL--S--HRIP---FK--LHGLPVSSVFHPTRSIFFVSTK 559 (707)
Q Consensus 497 V~~v~~sp~---g~~lat~s~d--g---~~~~V~Iwdl~~~~--~--~~~~---~~--~~~~V~~v~fspd~~~l~v~sd 559 (707)
...|+|+|+ +.+|.++... . ....|..+++.... . .... +. .......++|.|+|.++++.++
T Consensus 75 ~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 75 LLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred eeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 788999997 4444443321 1 01367777776541 1 1011 21 1223567999999986665332
Q ss_pred --------------CeEEEEECCCCe-------EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCC---cEEEEECCC---
Q 005235 560 --------------KNIRVYDLLKQR-------LIKKLETGLKEVSSIAIHP-AGDNLIVGSREG---KLCWFDMDL--- 611 (707)
Q Consensus 560 --------------g~I~iwDl~~~~-------~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg---~I~vwDl~~--- 611 (707)
+.|..++....- ....+..+......|+|+| +|.++++-...+ .|.+.....
T Consensus 155 ~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyG 234 (354)
T 3a9g_A 155 AADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYG 234 (354)
T ss_dssp TTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCC
T ss_pred CCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCC
Confidence 456666654210 0111222224467899999 666555433222 243332110
Q ss_pred ------------CCcceEEeecCCCCEEEEEEc-------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe-e
Q 005235 612 ------------SSKPYRVLKCHPKDITNVAFH-------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL-R 671 (707)
Q Consensus 612 ------------~~~~~~~l~~h~~~I~~vafs-------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l-~ 671 (707)
...++..+.........++|. .+|.++++.-..+.|...++... ... .....+ .
T Consensus 235 wp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-----g~~-~~~~~~~~ 308 (354)
T 3a9g_A 235 WPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-----MEV-RKISTFFK 308 (354)
T ss_dssp TTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-----GCE-EEEEEECT
T ss_pred CCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-----Ccc-cceeeecc
Confidence 012334441123467888883 56777777666777877754311 111 111222 2
Q ss_pred CCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 672 GHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 672 gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
+-.. .+.++++.|||.+.++..
T Consensus 309 ~~~~----rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFG----RLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSC----CEEEEEECTTSCEEEEEC
T ss_pred CCCC----CeeEEEECCCCcEEEEEe
Confidence 2122 389999999998766664
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.18 E-value=0.19 Score=57.44 Aligned_cols=192 Identities=11% Similarity=-0.028 Sum_probs=120.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR 571 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~ 571 (707)
..+..|+|++.+..|..+... .+.|..+++...... ..+ .....+..+++.+.+..|+.+. .+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~--~~~I~r~~~~g~~~~-~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALE-HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECC--CCeEEEEECCCCCcE-EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 467899999977776665543 248999998765543 333 3335678999998877777765 5889999987543
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 005235 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAY 648 (707)
Q Consensus 572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~ 648 (707)
....+.........|+++|...+|..... .++|...+++.. . ...+...-...+.|++++++..|..+ +..+.|.
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence 22222244456799999996666666553 568888888744 2 33333345667899999976655544 4567888
Q ss_pred EEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 649 VFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
.++.. .... ..+...... ..++++.. +...+|-...+.|...|
T Consensus 192 ~~d~d------G~~~----~v~~~~l~~----P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 192 SSNML------GLNR----EVIADDLPH----PFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEETT------SCSC----EEEEECCSC----EEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEcCC------CCce----EEeeccCCC----ceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 88542 2221 122222222 56777754 33334444456666544
No 301
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.18 E-value=0.22 Score=52.41 Aligned_cols=240 Identities=9% Similarity=-0.025 Sum_probs=126.0
Q ss_pred CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235 417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK 495 (707)
Q Consensus 417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~ 495 (707)
-...+.|+|.|+| .++++.. .+.|++++...+.... +-.+. .+......
T Consensus 31 L~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~------------------------v~~~~----~v~~~g~~ 80 (347)
T 3das_A 31 LNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTE------------------------LGEVP----GVSPSGEG 80 (347)
T ss_dssp CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEE------------------------EEECT----TCCCBTTB
T ss_pred CCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEee------------------------ecccC----ceeecCCC
Confidence 4667899999999 5777777 8899888754432110 00000 01112345
Q ss_pred CeEEEEEcCC---CCEE-EEEeCCCCccEEEEEECCCCc-----e--eeee---e--ccCCCeEEEEEeCCCCEEEEEeC
Q 005235 496 MVSSVEWHRR---GDYL-STVMPAGESRAIFMHQLSKKL-----S--HRIP---F--KLHGLPVSSVFHPTRSIFFVSTK 559 (707)
Q Consensus 496 ~V~~v~~sp~---g~~l-at~s~dg~~~~V~Iwdl~~~~-----~--~~~~---~--~~~~~V~~v~fspd~~~l~v~sd 559 (707)
....|+|+|+ +.+| ++-+... ...|.-+.+.... . .... + ........++|.|+|.+.++.++
T Consensus 81 GllGia~~Pdf~~~g~lYv~yt~~~-~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 81 GLLGIALSPDYASDHMVYAYFTSAS-DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SEEEEEECTTHHHHCEEEEEEECSS-SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CceeeEeccccccCCEEEEEEecCC-CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 6789999985 3344 3322211 2366666665421 0 1011 2 11224467999999987666432
Q ss_pred --------------CeEEEEECCCCe-------EEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC----
Q 005235 560 --------------KNIRVYDLLKQR-------LIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSS---- 613 (707)
Q Consensus 560 --------------g~I~iwDl~~~~-------~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~---- 613 (707)
+.|.-++....- ....+..+......|+|+|+|.+.++-. .++.=.|.-+..+.
T Consensus 160 ~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw 239 (347)
T 3das_A 160 SGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW 239 (347)
T ss_dssp TTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT
T ss_pred CCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC
Confidence 455555554220 0112222334567899999887665532 22222222222211
Q ss_pred -------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235 614 -------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680 (707)
Q Consensus 614 -------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g 680 (707)
.|+..+..+..+...++|. ++.+|+..-..+.|....+... .....+...+.+....
T Consensus 240 P~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~-----~~~~~~e~~l~~~~gR---- 309 (347)
T 3das_A 240 PEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT-----AAAADPQAFLEGEYGR---- 309 (347)
T ss_dssp TTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT-----EESSCCEEESTTTSSC----
T ss_pred CcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC-----ceecceEEeecCCCCC----
Confidence 2344444333466778886 4666666655566655533211 0011122334443333
Q ss_pred eeEEEEcCCCCEEEEEe
Q 005235 681 VMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 681 V~~l~fspdg~~L~s~g 697 (707)
+.+|+..|||.++++..
T Consensus 310 ~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 310 LRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEEETTEEEEEEC
T ss_pred ccEEEECCCCcEEEEEc
Confidence 99999999998766654
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.17 E-value=0.067 Score=56.21 Aligned_cols=188 Identities=13% Similarity=0.206 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC----CCE--EEEEe--C---CeEEEEEC--CCCe
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT----RSI--FFVST--K---KNIRVYDL--LKQR 571 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd----~~~--l~v~s--d---g~I~iwDl--~~~~ 571 (707)
....++.....+ .+.+||+ .++.. ..+.. +.++.|..-|. +.. +++++ + ++|++|++ .++.
T Consensus 39 ~~s~ii~t~k~~---gL~Vydl-~G~~l-~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKS---GLVVYSL-DGKML-HSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTT---EEEEEET-TSCEE-EEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCC---CEEEEcC-CCcEE-EEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 344555555555 8999999 45444 44432 56777777663 221 33433 3 68999977 3443
Q ss_pred EEEEEe-------CCCCCeEEEEE--cCC-CC-EEEEEECCCcEEEEECCC---C---CcceEEeecCCCCEEEEEEcCC
Q 005235 572 LIKKLE-------TGLKEVSSIAI--HPA-GD-NLIVGSREGKLCWFDMDL---S---SKPYRVLKCHPKDITNVAFHRS 634 (707)
Q Consensus 572 ~~~~l~-------~~~~~I~sl~~--spd-g~-~L~sGs~Dg~I~vwDl~~---~---~~~~~~l~~h~~~I~~vafspd 634 (707)
+..+. .....+..+++ +|. |. ++++...+|.+..|++.. + .+.+++|.. ...+..|+..+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 44442 11145667777 774 43 688888899999998842 1 245666664 457889999998
Q ss_pred CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEE--cCCCC-EEEEEe-CCCcEEEEeC
Q 005235 635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKF--HPRQP-WLFTAG-ADSVIRLYCH 707 (707)
Q Consensus 635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~f--spdg~-~L~s~g-~Dg~IrlWdl 707 (707)
...|+.+-.+.-|..++.. .........+..+. ++-.. .+..|+. .+++. ||++++ .+++..+|+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~----p~~~~~~~~v~~~~~g~l~a---DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAE----PDGGSNGTVIDRADGRHLTR---DIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TTEEEEEETTTEEEEEECS----TTSCSCCEEEEEBSSSSBCS---CEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred CCeEEEecccceEEEEeCC----cCCCCCceEEEEecCCcccc---CcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 8888889888655555432 11111112233332 22221 2777777 56666 666555 6778888874
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.08 E-value=0.031 Score=60.09 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=100.7
Q ss_pred EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC----CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---c----
Q 005235 546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG----LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---K---- 614 (707)
Q Consensus 546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~----~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~---- 614 (707)
....++..++++.++.||..++......+.+... -..|..+..+|+|++||..+. ..|.|..+..+. .
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence 4456788899999999999998855445555543 235888999999999998864 578888886321 1
Q ss_pred --c--eEEeec------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-----C
Q 005235 615 --P--YRVLKC------HPKDITNVAFHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-----S 676 (707)
Q Consensus 615 --~--~~~l~~------h~~~I~~vafspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-----~ 676 (707)
+ .+.+.- ...+|..+.|||- +..|++-..|++|++||+....+ . |. .|..... .
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~---~----P~-~L~k~~~~fg~d~ 177 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE---K----PI-VLNKPNNSFGLDA 177 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS---C----CE-EESCCCSEEESCS
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC---C----Cc-chhccccccCCCc
Confidence 1 122322 2467999999995 45899999999999998764211 1 12 2211100 0
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CCCcEEE
Q 005235 677 NGRGVMDCKFHPRQPWLFTAG--ADSVIRL 704 (707)
Q Consensus 677 ~~~gV~~l~fspdg~~L~s~g--~Dg~Irl 704 (707)
...-|.+++|.+++-.|...+ ..|-|.-
T Consensus 178 ~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 178 RVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 012389999999877666644 7787754
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.07 E-value=0.0011 Score=77.12 Aligned_cols=218 Identities=8% Similarity=-0.058 Sum_probs=124.9
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCC----CCc-hhc-ccccce--eeeccc
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGL----GNE-EEQ-RRVKDL--LHVETP 467 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~----~~~-~~~-~~~~~v--~~~~~~ 467 (707)
.+.|++.++.++.....+.....+.+|+|.+.+. .|+.+. ..+.|..+++.. ... .+. ...... +++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888888776654444456678899998763 455443 457899998875 111 111 000011 111111
Q ss_pred ----ccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235 468 ----TAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL 541 (707)
Q Consensus 468 ----~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~ 541 (707)
.++....+.|.+.+..+.....+.. .......|+++|.+.+|+.+... ....|.+.++...... ..+ ..-..
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~-~l~~~~l~~ 541 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY-SLVTENIQW 541 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC-EESCSSCSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee-EEEeCCCCC
Confidence 2333456778888877665544433 23456788999876655544321 1237777777654332 222 33456
Q ss_pred eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235 542 PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~ 616 (707)
...|+|+|++..|+++. .+.|.++++..... ..+.. .......|++..+ .++++....++|..+|..++ +.+
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~ 618 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG-SDV 618 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE-EEE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC-Cce
Confidence 77899999877777765 57899999874322 22321 1233456666543 34445555678888887665 444
Q ss_pred EEee
Q 005235 617 RVLK 620 (707)
Q Consensus 617 ~~l~ 620 (707)
..+.
T Consensus 619 ~~i~ 622 (699)
T 1n7d_A 619 NLLA 622 (699)
T ss_dssp ECCC
T ss_pred EEee
Confidence 4443
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.02 Score=63.26 Aligned_cols=160 Identities=13% Similarity=0.167 Sum_probs=97.2
Q ss_pred CeEEEEEeC-CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---CCeEEEEE-------cCCCCEEEEEECCC-----
Q 005235 541 LPVSSVFHP-TRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---KEVSSIAI-------HPAGDNLIVGSREG----- 602 (707)
Q Consensus 541 ~V~~v~fsp-d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~-------spdg~~L~sGs~Dg----- 602 (707)
....|+|+| +...|+++. .+.|++.|+.++.+...+.... .....|+| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 466666665 3679999998877665444322 24899999 99999777776654
Q ss_pred --cEEEEECCCCCcce-----EEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccC-CCCCCc----------
Q 005235 603 --KLCWFDMDLSSKPY-----RVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSD-LNQNPL---------- 663 (707)
Q Consensus 603 --~I~vwDl~~~~~~~-----~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~D-l~~~~~---------- 663 (707)
.|.+++........ ..+... .....++++| ++.++++-..++.|..++...+.. ..+...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 27777654411111 223222 2335788999 566777777888999996541000 001111
Q ss_pred -ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEe
Q 005235 664 -IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA-GADSVIRLYC 706 (707)
Q Consensus 664 -~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~-g~Dg~IrlWd 706 (707)
...+..+. ... .-..|+|+|+|.+|+.+ ...+.|+.++
T Consensus 299 ~~~~l~~~~-~~~----~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQLFTIA-DPS----WEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEEEECS-SSS----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceeEecC-CCC----CceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 01121221 122 26899999999965544 4566777754
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.07 E-value=0.13 Score=58.85 Aligned_cols=158 Identities=11% Similarity=-0.044 Sum_probs=101.4
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL 568 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~ 568 (707)
.....+..|+|++.+..|..+... .+.|..+++.........+ ..-..+..+++.+.+..|+++. .+.|.+.++.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 344567899999977777666543 2488888887654321333 3336789999999777777775 6899999997
Q ss_pred CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCC
Q 005235 569 KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDC 645 (707)
Q Consensus 569 ~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg 645 (707)
.......+.........|+++|.+.+|..... .+.|...+++.. .........-...+.+++++++..|..+ +..+
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~ 193 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 193 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence 54322223234455789999998666666553 467888888633 3233333334567899999976655444 4567
Q ss_pred cEEEEec
Q 005235 646 TAYVFHG 652 (707)
Q Consensus 646 ~I~Vwd~ 652 (707)
.|..++.
T Consensus 194 ~I~~~~~ 200 (619)
T 3s94_A 194 FIHKSNL 200 (619)
T ss_dssp CEEEESS
T ss_pred eEEEecC
Confidence 7888843
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.04 E-value=0.22 Score=52.52 Aligned_cols=224 Identities=12% Similarity=0.000 Sum_probs=117.2
Q ss_pred EEEEeCCCcEEEEeCCCCe-EEEEEe----cCCcEEEEEEccC---CCccEEEEEe----C----CeEEEEECCCCCchh
Q 005235 391 EYKGSTDGTVRIWEVESGR-CLRVLE----IGEAIQYVAWNPL---PELPVLAVSV----G----QDVLILNTGLGNEEE 454 (707)
Q Consensus 391 l~sgs~DgtVrIWd~~tg~-~l~~l~----~~~~V~~v~~spd---g~~~lla~s~----d----~~V~lwd~~~~~~~~ 454 (707)
++.+..+|.|++++ .+|+ .+..+. .......|+|+|+ +. .|+++.. + +.|..|+.......+
T Consensus 42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~ 119 (354)
T 3a9g_A 42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKS-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKL 119 (354)
T ss_dssp EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEEECGGGCEEEEEEEEEECSSSCCE
T ss_pred EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCC-EEEEEEeccCCCCCcceEEEEEEECCCCcCc
Confidence 55556679999997 4565 222211 1456899999997 31 4555543 2 456666654321000
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC----------CccEEEEE
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG----------ESRAIFMH 524 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg----------~~~~V~Iw 524 (707)
. . .-.++. ..-.........|+|.|+|.++++.+..+ ..+.|.-.
T Consensus 120 ~--~-----------------~~~l~~------~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 120 K--E-----------------VKTLID------GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp E--E-----------------EEEEEE------EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred C--c-----------------cEEEEE------cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence 0 0 000110 00001112346799999998777654322 11355555
Q ss_pred ECCCCc-------eeeeee-ccCCCeEEEEEeC-CCCEEEEEe--CC--eEEEEECCC----------------CeEEEE
Q 005235 525 QLSKKL-------SHRIPF-KLHGLPVSSVFHP-TRSIFFVST--KK--NIRVYDLLK----------------QRLIKK 575 (707)
Q Consensus 525 dl~~~~-------~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s--dg--~I~iwDl~~----------------~~~~~~ 575 (707)
+....- .. ..+ ........++|+| ++.++++-. ++ .|.+..... ..++..
T Consensus 175 ~~dG~~p~~npf~~~-~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 175 DEEGRPPADNPFPNS-PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp CTTSCCCTTSSSTTC-CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cCCCCCCCCCCCCCC-cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 554320 01 122 2223467899999 566555433 22 233332110 012222
Q ss_pred EeCCCCCeEEEEEc-------CCCCEEEEEECCCcEEEEECCCCCcce--EEe-ecCCCCEEEEEEcCCCCEEEEEe
Q 005235 576 LETGLKEVSSIAIH-------PAGDNLIVGSREGKLCWFDMDLSSKPY--RVL-KCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 576 l~~~~~~I~sl~~s-------pdg~~L~sGs~Dg~I~vwDl~~~~~~~--~~l-~~h~~~I~~vafspdg~llaSgs 642 (707)
+.........++|. .+|.++++....+.|..+++....... ..+ ..-...+..|++.|+|.++++..
T Consensus 254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 31122457888883 567666666667789998887532222 222 22245789999999998777664
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.02 E-value=0.12 Score=54.63 Aligned_cols=243 Identities=14% Similarity=0.095 Sum_probs=123.9
Q ss_pred CcEEEEEEccCCCcc-EEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235 418 EAIQYVAWNPLPELP-VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM 496 (707)
Q Consensus 418 ~~V~~v~~spdg~~~-lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~ 496 (707)
.....|+|.|+| . ++++...+.|.+++........ +... ..........
T Consensus 18 ~~P~~i~~~pdG--~~l~V~e~~G~i~~~~~~g~~~~~------~~~~----------------------~~v~~~g~~g 67 (353)
T 2g8s_A 18 DHPWALAFLPDN--HGMLITLRGGELRHWQAGKGLSAP------LSGV----------------------PDVWAHGQGG 67 (353)
T ss_dssp SSEEEEEECSTT--CCEEEEETTTEEEEEETTTEECCC------CBSC----------------------CCCCCSTTCS
T ss_pred CCcEEEEEcCCC--CEEEEEeCCceEEEEeCCCceeeE------ecCC----------------------cccccCCCCC
Confidence 456899999999 5 8888888999998843210000 0000 0001112345
Q ss_pred eEEEEEcCC---CCEEEEE-eCCCC----ccEEEEEECCCCc----eeeeee---c----cCCCeEEEEEeCCCCEEEEE
Q 005235 497 VSSVEWHRR---GDYLSTV-MPAGE----SRAIFMHQLSKKL----SHRIPF---K----LHGLPVSSVFHPTRSIFFVS 557 (707)
Q Consensus 497 V~~v~~sp~---g~~lat~-s~dg~----~~~V~Iwdl~~~~----~~~~~~---~----~~~~V~~v~fspd~~~l~v~ 557 (707)
...|+|+|+ +.+|..+ +..+. ...|..+++.... .....+ . .......++|.|+|.++++.
T Consensus 68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 678999995 4444333 22110 2356666665431 110111 1 11224679999999555543
Q ss_pred eC--------------CeEEEEECCCCe------------EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCC--cEEEEE
Q 005235 558 TK--------------KNIRVYDLLKQR------------LIKKLETGLKEVSSIAIHP-AGDNLIVGSREG--KLCWFD 608 (707)
Q Consensus 558 sd--------------g~I~iwDl~~~~------------~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg--~I~vwD 608 (707)
++ +.|.-++....- ....+..+......|+|+| +|.+++ +.... .=.|.-
T Consensus 148 Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~-~d~g~~~~dei~~ 226 (353)
T 2g8s_A 148 GENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWL-NEHGPRGGDEINI 226 (353)
T ss_dssp CCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEE-EEECSBSCEEEEC
T ss_pred CCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEE-EecCCCCCcEEeE
Confidence 33 367777765320 1112222335578999999 554444 33321 111211
Q ss_pred CCCC------------------------------CcceEEeecCCCCEEEEEEcC-------CCCEEEEEeCCCcEEEEe
Q 005235 609 MDLS------------------------------SKPYRVLKCHPKDITNVAFHR-------SYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 609 l~~~------------------------------~~~~~~l~~h~~~I~~vafsp-------dg~llaSgs~Dg~I~Vwd 651 (707)
+..+ ..+...+..| .+...++|.. ++.+|++.-..+.|...+
T Consensus 227 i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~ 305 (353)
T 2g8s_A 227 PQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMS 305 (353)
T ss_dssp CCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEE
T ss_pred eccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEE
Confidence 1111 1233334333 4677888864 466777766677777764
Q ss_pred cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 005235 652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVI 702 (707)
Q Consensus 652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~I 702 (707)
+. ..........+.+... .+.++++.|+|.++++.. .+|.|
T Consensus 306 ~~------~~~~~~~~~~~~~~~~----rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 306 VN------GDKVTEDGRILTDRGQ----RIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EE------TTEEEEEEEESGGGCC----CEEEEEECTTSCEEEEECSTTEEE
T ss_pred eC------CCeEeeeEEcccCCCC----ceeEEEECCCCcEEEEEeCCCCEE
Confidence 43 1111101111222222 299999999998666543 44544
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.00 E-value=0.53 Score=50.66 Aligned_cols=219 Identities=10% Similarity=0.124 Sum_probs=144.3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476 (707)
Q Consensus 397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~ 476 (707)
..++.|+|+++...++.+...+.|..=.|-.+. .++.-.+..|+-|++... ...
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~---~l~lVT~taVyHWsi~~~-----------------------s~P 138 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGE-----------------------SQP 138 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT---EEEEECSSEEEEEESSSS-----------------------CCC
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCC---eEEEEcCCeeEEecccCC-----------------------CCc
Confidence 678999999999999999998888888887775 677778889999997542 345
Q ss_pred EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC---CC-CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC-
Q 005235 477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP---AG-ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT- 550 (707)
Q Consensus 477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~---dg-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd- 550 (707)
++++++..... ...|.....+++.++++..+- ++ -.+.+.+|..+.+.++ .+ +|-+....+.+..+
T Consensus 139 ~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ieGhaa~F~~~~~~g~~ 210 (494)
T 1bpo_A 139 VKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFAQFKMEGNA 210 (494)
T ss_dssp EEEEECCGGGT------TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EECCSEEEEEEEECTTCS
T ss_pred hhheecchhcc------cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hheeeeeeeEEEecCCCC
Confidence 66666554332 345666667778888775543 11 2348899999988775 45 55433333322211
Q ss_pred -C-CEEEEEe----CCeEEEEECCCC--------e-EEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 551 -R-SIFFVST----KKNIRVYDLLKQ--------R-LIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 551 -~-~~l~v~s----dg~I~iwDl~~~--------~-~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
. .+|+.+. .+.++|.++... + .+..+.. ...-.-+|.+++.-..+..-+.-|.|.+||+.++
T Consensus 211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence 1 2333343 378999998542 1 1111111 1244678899999899999999999999999998
Q ss_pred CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.++..-+-....|...+.+....=++.....|.|.--
T Consensus 291 -t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 291 -TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp -CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred -eeeeeecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 5665555556666665555554444445566655444
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.73 E-value=0.15 Score=53.81 Aligned_cols=142 Identities=16% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e---ee-ccCCCeEEEEEeCC---CCEEEEEe--C----
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I---PF-KLHGLPVSSVFHPT---RSIFFVST--K---- 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~---~~-~~~~~V~~v~fspd---~~~l~v~s--d---- 559 (707)
-.....++|.|+|.++++ ...+ .|.+++ .+.... . .+ ........++|+|+ +..|+++. .
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g---~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPG---RIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTT---EEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCCceEEEEcCCCeEEEE-eCCC---eEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 445789999999996655 4445 888888 332210 1 11 23467899999998 56666654 2
Q ss_pred -CeEEEEECCCCe------EEEEEe---CCCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCC----
Q 005235 560 -KNIRVYDLLKQR------LIKKLE---TGLKEVSSIAIHPAGDNLIVGSR-------------EGKLCWFDMDLS---- 612 (707)
Q Consensus 560 -g~I~iwDl~~~~------~~~~l~---~~~~~I~sl~~spdg~~L~sGs~-------------Dg~I~vwDl~~~---- 612 (707)
+.|..|++..+. ++..+. ........|+|.|+|.++++.+. .|+|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 678888877432 122233 11123468999999976665322 256766666530
Q ss_pred --------CcceEEeecCCCCEEEEEEcC-CCCEEEEEe
Q 005235 613 --------SKPYRVLKCHPKDITNVAFHR-SYPLFASCS 642 (707)
Q Consensus 613 --------~~~~~~l~~h~~~I~~vafsp-dg~llaSgs 642 (707)
........+| .....++|+| ++.++++-.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 0111112233 3356789999 677666544
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.72 E-value=0.16 Score=53.60 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCCCEEEEEe------------CCCCccEEEEEECCCC--ceeeeee-c-----cCCCeEEEEEeC--CCC
Q 005235 495 KMVSSVEWHRRGDYLSTVM------------PAGESRAIFMHQLSKK--LSHRIPF-K-----LHGLPVSSVFHP--TRS 552 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s------------~dg~~~~V~Iwdl~~~--~~~~~~~-~-----~~~~V~~v~fsp--d~~ 552 (707)
.....++..++|..+++++ .+| .|.++|+.+. +.....+ + .......+.+.+ ++.
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G---~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSG---KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CC---EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCC---eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 3456777788876655552 344 9999999743 3221222 2 234677888876 343
Q ss_pred -EEEEEe----CCeEEEEECCC--C--eEEEEEeCC-CCCeEEEEEcCCCCEEEEEEC-----------------CCcEE
Q 005235 553 -IFFVST----KKNIRVYDLLK--Q--RLIKKLETG-LKEVSSIAIHPAGDNLIVGSR-----------------EGKLC 605 (707)
Q Consensus 553 -~l~v~s----dg~I~iwDl~~--~--~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~-----------------Dg~I~ 605 (707)
+|+++. +.+|.+|++.. + ..+.++.+. -...+.+++.++|.+.++... .|.|.
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 566654 36777877654 2 233444432 244789999999988777541 24455
Q ss_pred EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
-+|. + . .+.+...-..-+.++|||+++.|+.+ +..+.|..|++.. .........+.- .. ..-.+
T Consensus 207 r~d~--~-~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~------~g~l~~~~~~~~-~g----~PDGi 271 (355)
T 3sre_A 207 YYSP--N-D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA------NWTLTPLRVLSF-DT----LVDNI 271 (355)
T ss_dssp EECT--T-C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT------TSCEEEEEEEEC-SS----EEEEE
T ss_pred EEEC--C-e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC------CCcEecCEEEeC-CC----CCceE
Confidence 5554 2 2 22332233457899999999866555 4678899996531 111112233321 12 26788
Q ss_pred EEcC-CCCEEEEEeCC
Q 005235 685 KFHP-RQPWLFTAGAD 699 (707)
Q Consensus 685 ~fsp-dg~~L~s~g~D 699 (707)
++.+ +|.+.+++..+
T Consensus 272 ~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EECTTTCCEEEEEESC
T ss_pred EEeCCCCcEEEEecCC
Confidence 8998 58877766533
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.63 E-value=0.25 Score=53.13 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred cCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--cc---CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe------
Q 005235 503 HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL---HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR------ 571 (707)
Q Consensus 503 sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~---~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~------ 571 (707)
+.+|.-++++.. +.|+.-++...... +.+ .. -..+..+..+|+|.+|++.++..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~~----n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 29 SQNGTRIVFIQD----NIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp ETTTTEEEEEET----TEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred EcCCCEEEEEEC----CEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccc
Confidence 345666555553 28888888744433 444 21 236888999999999999999999999987321
Q ss_pred ------EEEEEeCC------CCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCC-CcceEEeec---------CCCCE
Q 005235 572 ------LIKKLETG------LKEVSSIAIHPAG---DNLIVGSREGKLCWFDMDLS-SKPYRVLKC---------HPKDI 626 (707)
Q Consensus 572 ------~~~~l~~~------~~~I~sl~~spdg---~~L~sGs~Dg~I~vwDl~~~-~~~~~~l~~---------h~~~I 626 (707)
..+.+.-+ ...|..+.|||-| ..|++-..|+.|++||+... ..|. .|.. ....|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 12344432 4669999999965 68999999999999999863 2344 4431 22568
Q ss_pred EEEEEcCCCCEEEEEe--CCCcEEEE
Q 005235 627 TNVAFHRSYPLFASCS--DDCTAYVF 650 (707)
Q Consensus 627 ~~vafspdg~llaSgs--~Dg~I~Vw 650 (707)
.+++|..++-.|...+ ..|-|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 8999999776555544 77887654
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.56 E-value=0.047 Score=53.43 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=88.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC--------eEEEEEeCCCCEEEEEeCCeEEEEE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL--------PVSSVFHPTRSIFFVSTKKNIRVYD 566 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~--------V~~v~fspd~~~l~v~sdg~I~iwD 566 (707)
..++.++|+|+|.+.++ .+| .+.-.+..+...+ .=+..... ..++.|.|+|.+.++ +||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G---~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LND---KIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETT---EEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCC---eEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeC
Confidence 47789999999986666 555 6655555443322 11122222 378999999998888 889998887
Q ss_pred CCCC-------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-----ceEEee-cCCCCEEEEEEcC
Q 005235 567 LLKQ-------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-----PYRVLK-CHPKDITNVAFHR 633 (707)
Q Consensus 567 l~~~-------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-----~~~~l~-~h~~~I~~vafsp 633 (707)
--+. .-.+.-...-..+..|.+.|+|.+.++. |+.++-...-+... ....+- ......+-+.|.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 5331 1111222233568999999999888877 77765433321110 111221 2333456688999
Q ss_pred CCCEEEEEeCCCcEEEE
Q 005235 634 SYPLFASCSDDCTAYVF 650 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vw 650 (707)
++.++++. +| ++|
T Consensus 192 ~G~l~~v~--~g--~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ--GG--KFY 204 (236)
T ss_dssp TSCEEEEE--TT--EEE
T ss_pred CCcEEEEe--CC--eEE
Confidence 99988776 66 455
No 314
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.52 E-value=0.95 Score=46.92 Aligned_cols=250 Identities=11% Similarity=0.143 Sum_probs=141.0
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM 474 (707)
Q Consensus 395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d 474 (707)
+++..|.|-|+..+..+...... --+.-.+|.. .++|.-.+.++.++|+++....
T Consensus 46 ~~~~~VvIiDl~n~~~~~Rrpi~--AdsAIMnP~~--~ViALrag~~LQiFnletK~kl--------------------- 100 (365)
T 2xzh_A 46 GEQAQVVIIDMNDPSNPIRRPIS--ADSAIMNPAS--KVIALKAGKTLQIFNIEMKSKM--------------------- 100 (365)
T ss_dssp TTEEEEEEEETTSTTSCEEEECC--CSEEEECSSS--SEEEEEETTEEEEEETTTTEEE---------------------
T ss_pred CCCCEEEEEECCCCCCccccccc--cceeeeCCCc--cEEEEecCCeEEEechHHhhhh---------------------
Confidence 34446888888775543222221 1133458887 5888878889999998775321
Q ss_pred CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----CCCeEEEEEeC
Q 005235 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL----HGLPVSSVFHP 549 (707)
Q Consensus 475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~----~~~V~~v~fsp 549 (707)
........|.-=.|-.. +.|+-++.. .|+.|++.........| .| ...|.....++
T Consensus 101 --------------ks~~~~e~VvfWkWis~-~~L~lVT~t----aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~ 161 (365)
T 2xzh_A 101 --------------KAHTMTDDVTFWKWISL-NTVALVTDN----AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 161 (365)
T ss_dssp --------------EEEECSSCEEEEEECSS-SEEEEEESS----EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred --------------cceecCCccEEEEecCC-CeEEEEcCC----cEEEEcccCCCCCceeeecchhcccceEEEEEECC
Confidence 01122334544456533 445555532 89999997644432445 33 34566777788
Q ss_pred CCCEEEEEe----C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC---CCEEEEEEC---CCcEEEEECCCC---
Q 005235 550 TRSIFFVST----K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA---GDNLIVGSR---EGKLCWFDMDLS--- 612 (707)
Q Consensus 550 d~~~l~v~s----d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd---g~~L~sGs~---Dg~I~vwDl~~~--- 612 (707)
+.++++..+ + |.+.+|..+.+ ..+.+.+|......+.+.-+ ...++.+.. .+++.|.++...
T Consensus 162 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~ 240 (365)
T 2xzh_A 162 KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 240 (365)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT
T ss_pred CCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC
Confidence 999877642 2 78999998754 45567777544333322111 123343332 258999998543
Q ss_pred Ccce--E---Eeec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235 613 SKPY--R---VLKC---HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC 684 (707)
Q Consensus 613 ~~~~--~---~l~~---h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l 684 (707)
..++ + .+-. -..---++..|+.+.++..-+.-|.|++| |+.++.+ +..-+-.... |...
T Consensus 241 ~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihly------DleTgt~---i~~nrIS~d~----iF~t 307 (365)
T 2xzh_A 241 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY------DLETGTC---IYMNRISGET----IFVT 307 (365)
T ss_dssp CCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE------ETTTCCE---EEEEECCSSC----EEEE
T ss_pred CCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEE------EcccCcE---EEEeccCCCc----eEEe
Confidence 1111 1 1111 12334578888888899999999999999 5555544 3222222222 4444
Q ss_pred EEcCCCCEEEEEeCCCcE
Q 005235 685 KFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 685 ~fspdg~~L~s~g~Dg~I 702 (707)
+-+....-++.....|.|
T Consensus 308 a~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 308 APHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EEEGGGTEEEEEETTCEE
T ss_pred cccCCCCcEEEEcCCCEE
Confidence 444333344444455544
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.38 E-value=3 Score=51.06 Aligned_cols=255 Identities=12% Similarity=0.029 Sum_probs=136.2
Q ss_pred CCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEEecCCcEEEEEEccC---CCccEEEEEe---CCe
Q 005235 376 PSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--------RCLRVLEIGEAIQYVAWNPL---PELPVLAVSV---GQD 441 (707)
Q Consensus 376 p~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--------~~l~~l~~~~~V~~v~~spd---g~~~lla~s~---d~~ 441 (707)
|.+..+..+. ..++|.||.-|.=.+|.+... +.+.++..-++|..++.... +...|++++. +|.
T Consensus 327 ~~~ssl~~l~--~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 327 SIAECLTYLD--NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp SCCSEEEECS--TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred cCccEEEEEC--CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 3344443332 348899998888777777643 45666777889998887542 2236777664 467
Q ss_pred EEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc----------------cceEEeccCCCeEEE---EE
Q 005235 442 VLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK----------------LDGIRLRHFKMVSSV---EW 502 (707)
Q Consensus 442 V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~----------------~~~~~~~h~~~V~~v---~~ 502 (707)
++++...-+-.... ...-.+...+|.+... ...... ....+..+ .|
T Consensus 405 L~~lr~Gi~~~~~~--------------~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i-~~e~veev~~~gf 469 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHA--------------SIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLML-NGEEVEETELMGF 469 (1158)
T ss_dssp EEEEEESBCEEEEE--------------EECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEE-ETTEEEEECCTTC
T ss_pred EEEEecCCCEEEEE--------------eecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEE-eCCcccccccccc
Confidence 88776443311110 0001122334433211 000000 00111111 11
Q ss_pred cCCCCEEEEEeCCC------CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE-
Q 005235 503 HRRGDYLSTVMPAG------ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI- 573 (707)
Q Consensus 503 sp~g~~lat~s~dg------~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~- 573 (707)
..+...|+++.-.+ ....|++.+....... ... .....|..++.+. .++++++++.+.++.+..+++.
T Consensus 470 ~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~-~~w~~p~~~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~ 546 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV-SEWKEPQAKNISVASCNS--SQVVVAVGRALYYLQIHPQELRQ 546 (1158)
T ss_dssp CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEE-EEECCTTCCCCCEEEECS--SEEEEEETTEEEEEEEETTEEEE
T ss_pred cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEE-EEEECCCCCEEEEEEeCC--CEEEEEECCEEEEEEeeCCceee
Confidence 12223333332211 0124666666543333 334 2334566666553 4677767778888887765432
Q ss_pred -EEEeCCCCCeEEEEEcCC------CCEEEEEEC-CCcEEEEECCCCCcceEEeec-CCCCEEEEEEcC--CCCEEEEEe
Q 005235 574 -KKLETGLKEVSSIAIHPA------GDNLIVGSR-EGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHR--SYPLFASCS 642 (707)
Q Consensus 574 -~~l~~~~~~I~sl~~spd------g~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafsp--dg~llaSgs 642 (707)
.... -...|+|+++.|. ++++++|.. |++|+|+++... .++....- -.....++.+.. ...+|..|-
T Consensus 547 ~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl 624 (1158)
T 3ei3_A 547 ISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEMLGGEIIPRSILMTTFESSHYLLCAL 624 (1158)
T ss_dssp EEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred ecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEe
Confidence 2222 2357999999863 479999997 999999999864 33332221 123445554432 335788888
Q ss_pred CCCcEEEEec
Q 005235 643 DDCTAYVFHG 652 (707)
Q Consensus 643 ~Dg~I~Vwd~ 652 (707)
.||.+.-+.+
T Consensus 625 ~dG~l~~~~~ 634 (1158)
T 3ei3_A 625 GDGALFYFGL 634 (1158)
T ss_dssp TTSEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9998876654
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.17 E-value=0.16 Score=49.69 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=86.3
Q ss_pred CCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe------EEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235 540 GLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR------LIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS 612 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~------~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~ 612 (707)
..+..++|||++.+.++ .++.+.-.+..+.. .-..+- .+-....++.|+|+|.+.++ .||.|+-++--+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 46779999999998777 88888877765521 112221 11122578999999988888 5699988876332
Q ss_pred Ccc------eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235 613 SKP------YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF 686 (707)
Q Consensus 613 ~~~------~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f 686 (707)
..- .+.-+.-=..+..|.|.|+|.+.|.. |+.++-+. . + ...+........+-++... .--..+.|
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~-~-P--~~~~~~wl~~~~~~g~~g~--~~yr~l~f 189 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL-P-P--VSNQDNWLARATKIGQGGW--DTFKFLFF 189 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC-C-C--SSTTCCHHHHCEEEESSSG--GGEEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC-C-C--CCCCcccccccceeccCCc--ceEEEEEE
Confidence 110 11111112468999999999988877 77643321 1 1 1111111111222222211 01455779
Q ss_pred cCCCCEEEEEeCCCcE
Q 005235 687 HPRQPWLFTAGADSVI 702 (707)
Q Consensus 687 spdg~~L~s~g~Dg~I 702 (707)
.+++.+.+.. +|.+
T Consensus 190 ~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CTTSCEEEEE--TTEE
T ss_pred CCCCcEEEEe--CCeE
Confidence 9998766555 6643
No 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.10 E-value=0.36 Score=52.79 Aligned_cols=105 Identities=11% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCeEE--EEEeC------CCCCeEEEEEcCC---CCEEEEEE-C-----
Q 005235 539 HGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQRLI--KKLET------GLKEVSSIAIHPA---GDNLIVGS-R----- 600 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~~~--~~l~~------~~~~I~sl~~spd---g~~L~sGs-~----- 600 (707)
-....+++|.|+|.++++-.. +.|++++..+++.. ..+.. ....+..|+|+|+ +..|.+.. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 446789999999997776655 47999887655432 22221 2355789999995 44554443 2
Q ss_pred -------CCcEEEEECCCCC----c---ceEEee-cCCCCEEEEEEcCCCCEEEEEeC
Q 005235 601 -------EGKLCWFDMDLSS----K---PYRVLK-CHPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 601 -------Dg~I~vwDl~~~~----~---~~~~l~-~h~~~I~~vafspdg~llaSgs~ 643 (707)
...|.-|++.... . .+..+. ........|+|.|+|.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666664321 1 111122 11234789999999998887664
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.02 E-value=0.93 Score=47.60 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee--------ccCCCeEEEEEeCC---CCEEEEEe-C-
Q 005235 494 FKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPT---RSIFFVST-K- 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd---~~~l~v~s-d- 559 (707)
-.....|+|.|+|+ +++ +...+ .|++++.... .. .++ ...+....++|+|+ +..|+++. .
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G---~i~~~~~~g~-~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGG---ELRHWQAGKG-LS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTT---EEEEEETTTE-EC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCc---eEEEEeCCCc-ee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 34568999999999 554 45556 8888885432 11 111 23456789999996 55665553 1
Q ss_pred -------CeEEEEECCCC--e--EEEEE-eC------CCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEE
Q 005235 560 -------KNIRVYDLLKQ--R--LIKKL-ET------GLKEVSSIAIHPAGDNLIVGSR-------------EGKLCWFD 608 (707)
Q Consensus 560 -------g~I~iwDl~~~--~--~~~~l-~~------~~~~I~sl~~spdg~~L~sGs~-------------Dg~I~vwD 608 (707)
..|..|++... . ....+ .. .......|+|.|+|.++++-+. .|+|.-++
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 25666666532 1 12222 11 1122467999999955554322 24677777
Q ss_pred CCCCC---c--------ceEEe-ecCCCCEEEEEEcC-CCCEEEE
Q 005235 609 MDLSS---K--------PYRVL-KCHPKDITNVAFHR-SYPLFAS 640 (707)
Q Consensus 609 l~~~~---~--------~~~~l-~~h~~~I~~vafsp-dg~llaS 640 (707)
.+..- . ....+ .+| .....++|+| .+.++++
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 75320 0 11122 233 3468899999 6766654
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.88 E-value=2.1 Score=44.83 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=117.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEE--Ee-----cCCcEEEEEEccC----CCccEEEEE---eCCeEEEEECCCCCchh
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRV--LE-----IGEAIQYVAWNPL----PELPVLAVS---VGQDVLILNTGLGNEEE 454 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l~-----~~~~V~~v~~spd----g~~~lla~s---~d~~V~lwd~~~~~~~~ 454 (707)
.++++--..|.|++++..+|+.... +. .......|+|+|+ + .|++.- .++.|.-|.+..+....
T Consensus 44 ~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g--~lYv~yt~~~~~~v~R~~~~~~~~~~ 121 (347)
T 3das_A 44 DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH--MVYAYFTSASDNRIVRMLYDEKKPSG 121 (347)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC--EEEEEEECSSSEEEEEEEBCTTSCTT
T ss_pred cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC--EEEEEEecCCCCEEEEEEeCCCCccc
Confidence 3555544489999998766654322 21 1567899999995 4 454432 23445555543321000
Q ss_pred cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC----------CccEEEEE
Q 005235 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG----------ESRAIFMH 524 (707)
Q Consensus 455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg----------~~~~V~Iw 524 (707)
. .....-.++.. .-.........|+|.|+|.++++.+..+ ..+.|.-.
T Consensus 122 ~----------------~~~~~~~i~~~------~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 122 E----------------QLGAPDTVFRG------IPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp C----------------CBCCCEEEEEE------ECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred c----------------cCCCcEEEEEc------CCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 0 00001111210 0001122346799999998777765322 11244444
Q ss_pred ECCCCce------eeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe------------------EEEEEe
Q 005235 525 QLSKKLS------HRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR------------------LIKKLE 577 (707)
Q Consensus 525 dl~~~~~------~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~------------------~~~~l~ 577 (707)
+....-. ....+ ........++|+|++.++++-. ++.-.|.-+..+. ++..+.
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~ 259 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS 259 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC
T ss_pred eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC
Confidence 4433200 00122 2234567899999887666533 3323332222221 122333
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 578 TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 578 ~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
.+....+.|+|. +|..++..-..+.|....+.... .+...+.+....++.|+..|+|.++++-+
T Consensus 260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 222346677776 45555555555667777775431 12233444456799999999998666544
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.68 E-value=3 Score=44.96 Aligned_cols=253 Identities=10% Similarity=0.141 Sum_probs=143.6
Q ss_pred EeCCCcEEEEeC-CCCeEEEEEec--CCcEE-------EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235 394 GSTDGTVRIWEV-ESGRCLRVLEI--GEAIQ-------YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH 463 (707)
Q Consensus 394 gs~DgtVrIWd~-~tg~~l~~l~~--~~~V~-------~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~ 463 (707)
-..|.-|.|-+- ..+..+..+.. ...|. +.-.+|.. .++|.-.+.++.|+|+++....
T Consensus 32 mESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~--~iiALrag~~lQiFnle~K~kl---------- 99 (494)
T 1bpo_A 32 MESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPAS--KVIALKAGKTLQIFNIEMKSKM---------- 99 (494)
T ss_dssp EEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCSEEEECSSS--SCEEEEETTEEEEEETTTTEEE----------
T ss_pred eecCceEEEEecCCCCCeEEEEECCCCCcceecccccceeeeCCCC--cEEEEecCCeEEEEchHHhhhh----------
Confidence 356777777773 33444555555 22332 45577776 5677667778888887664221
Q ss_pred ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----
Q 005235 464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL---- 538 (707)
Q Consensus 464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~---- 538 (707)
........|.-=.|-.. +.|+.++. ..|+.|++.........| .|
T Consensus 100 -------------------------ks~~~~e~VvfWkWis~-~~l~lVT~----taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 100 -------------------------KAHTMTDDVTFWKWISL-NTVALVTD----NAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp -------------------------EEEECSSCCCEEEEEET-TEEEEECS----SEEEEEESSSSCCCEEEEECCGGGT
T ss_pred -------------------------cceecCCCceEEEecCC-CeEEEEcC----CeeEEecccCCCCchhheecchhcc
Confidence 11122334555556433 44555553 289999997644332455 33
Q ss_pred CCCeEEEEEeCCCCEEEEEe--------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC---CEEEEEECC---CcE
Q 005235 539 HGLPVSSVFHPTRSIFFVST--------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG---DNLIVGSRE---GKL 604 (707)
Q Consensus 539 ~~~V~~v~fspd~~~l~v~s--------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg---~~L~sGs~D---g~I 604 (707)
...|.....+++.++++..+ .|.+.+|....+ ..+.+.+|......+.+..+. ..++.+... +++
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 34566777789999987532 278999998754 445677775544444332111 244444432 789
Q ss_pred EEEECCCC---Ccce--EEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235 605 CWFDMDLS---SKPY--RVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673 (707)
Q Consensus 605 ~vwDl~~~---~~~~--~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh 673 (707)
.|.++... ..++ +... +-..---++..|+.+.++..-+.-|.|++|| +.++.+ +..-+-.
T Consensus 229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyD------leTgt~---i~~nrIs 299 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD------LETGTC---IYMNRIS 299 (494)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEE------TTTCCE---EEEEECC
T ss_pred EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEe------ccccee---eeeeccc
Confidence 99998643 1111 1111 1123345788899999999999999999994 555543 2222222
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVI 702 (707)
Q Consensus 674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~I 702 (707)
... |...+-+....-++.....|.|
T Consensus 300 ~~~----iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 300 GET----IFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp SSC----EEEEEEETTTTEEEEEETTCEE
T ss_pred CCc----eEEecccCCCCcEEEEccCceE
Confidence 222 4444444444444444455544
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.64 E-value=2.7 Score=44.19 Aligned_cols=145 Identities=14% Similarity=0.209 Sum_probs=88.3
Q ss_pred CeEEEEEcC--CCC-EEEEEeCCCCccEEEEEECCCCceee---eee--ccCCCeEEEEEeCCCCEEEEEe----C----
Q 005235 496 MVSSVEWHR--RGD-YLSTVMPAGESRAIFMHQLSKKLSHR---IPF--KLHGLPVSSVFHPTRSIFFVST----K---- 559 (707)
Q Consensus 496 ~V~~v~~sp--~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~--~~~~~V~~v~fspd~~~l~v~s----d---- 559 (707)
....+.+.+ +|. +|+++.......+|.+|++....... ..+ ..-...+.+++.++|.+.++.. +
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 456666655 454 45444433224588888776543221 223 2234678999999998766642 1
Q ss_pred ----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcc--eEEeecCCCCE
Q 005235 560 ----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKP--YRVLKCHPKDI 626 (707)
Q Consensus 560 ----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~--~~~l~~h~~~I 626 (707)
+.|..||. +++ ..+...-...+.|+|+|+|+.|.++. ..++|..|+++..... .+.+ ......
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~P 268 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLV 268 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEE
T ss_pred cchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCC
Confidence 34555554 332 23333335578999999998887765 5678999998743222 2233 224556
Q ss_pred EEEEEcC-CCCEEEEEeCC
Q 005235 627 TNVAFHR-SYPLFASCSDD 644 (707)
Q Consensus 627 ~~vafsp-dg~llaSgs~D 644 (707)
-.+++.+ +|.+.+++..+
T Consensus 269 DGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEECTTTCCEEEEEESC
T ss_pred ceEEEeCCCCcEEEEecCC
Confidence 7889999 59988877644
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.36 E-value=0.69 Score=56.82 Aligned_cols=206 Identities=10% Similarity=0.132 Sum_probs=125.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~ 468 (707)
.+++-= ...++.|+|+.+...++.+.....|..=.|-... .++.-.+..|.-|++....
T Consensus 78 ~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~---~l~lVT~~aVyHW~~~~~s----------------- 136 (1630)
T 1xi4_A 78 KVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGES----------------- 136 (1630)
T ss_pred ceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCC---eeEEEcCCeEEEeccCCCC-----------------
Confidence 344433 3678999999999999999888888888887765 5666677789999985421
Q ss_pred cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC---C-CccEEEEEECCCCceeeeee-ccCCCeE
Q 005235 469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA---G-ESRAIFMHQLSKKLSHRIPF-KLHGLPV 543 (707)
Q Consensus 469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d---g-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~ 543 (707)
..++++++..... ...|..-..+++.++++..+-. + -.|.+.+|....+.++ .+ +|-+...
T Consensus 137 ------~P~k~fdR~~~L~------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F~ 202 (1630)
T 1xi4_A 137 ------QPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA 202 (1630)
T ss_pred ------ccHHHHhcchhcc------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhhh
Confidence 1222332221111 3456666667788877755532 1 2358999999888764 44 5544433
Q ss_pred EEEEe--CCC-CEEEEEe----CCeEEEEECCCC---------eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235 544 SSVFH--PTR-SIFFVST----KKNIRVYDLLKQ---------RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKL 604 (707)
Q Consensus 544 ~v~fs--pd~-~~l~v~s----dg~I~iwDl~~~---------~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I 604 (707)
.+.+. +.. .+|+.+. .+.++|.++... +.+..+... .....+|.+++.-..+..-+.-|.|
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence 33332 112 2333232 378999988543 111111111 2335678888888888888999999
Q ss_pred EEEECCCCCcceEEeecCCCCEEEEE
Q 005235 605 CWFDMDLSSKPYRVLKCHPKDITNVA 630 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~~I~~va 630 (707)
.+||+.++ .++..-+-....|...+
T Consensus 283 ~~~d~~t~-~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 283 HLYDLETG-TCIYMNRISGETIFVTA 307 (1630)
T ss_pred EEEecccc-hhhhhccccCCceEEec
Confidence 99999988 44433332333343333
No 323
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.36 E-value=0.85 Score=49.83 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-c------cCCCeEEEEEeCC---CCEEEEEe-C--
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-K------LHGLPVSSVFHPT---RSIFFVST-K-- 559 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~------~~~~V~~v~fspd---~~~l~v~s-d-- 559 (707)
-.....|+|.|+|+++++-...+ .|.+++...+.... ..+ . ..+.+..|+|+|+ +..|+++. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg---~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATG---KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTC---EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEcCCC---EEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 44678999999999777755433 68888765444321 122 1 2456779999996 55665543 1
Q ss_pred -----------CeEEEEECCCC--e-----EEE-EEeC-CCCCeEEEEEcCCCCEEEEEE
Q 005235 560 -----------KNIRVYDLLKQ--R-----LIK-KLET-GLKEVSSIAIHPAGDNLIVGS 599 (707)
Q Consensus 560 -----------g~I~iwDl~~~--~-----~~~-~l~~-~~~~I~sl~~spdg~~L~sGs 599 (707)
..|.-|++..+ . .+. .+.. .......|+|.|+|.++++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 24555655321 1 121 1221 123478999999998776643
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.22 E-value=1.6 Score=48.43 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=54.6
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235 625 DITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir 703 (707)
....+.++|||++++.++ .+.+|.|+++....++..+....|-..+.+.-. -++|.+..+|.++|....|.--|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence 345688999999777665 678999998875444333332222222222222 256799999999995445556899999
Q ss_pred EEeC
Q 005235 704 LYCH 707 (707)
Q Consensus 704 lWdl 707 (707)
-|++
T Consensus 403 kWni 406 (638)
T 3sbq_A 403 KWNM 406 (638)
T ss_dssp EEEH
T ss_pred EEec
Confidence 9985
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.56 E-value=0.69 Score=46.79 Aligned_cols=140 Identities=8% Similarity=0.057 Sum_probs=72.5
Q ss_pred CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235 505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK 575 (707)
Q Consensus 505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~ 575 (707)
++..++.|+.++. ...+.++|+.+..-... ++.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 5666777765442 24789999887764311 12211111222222 555656554 2 5699999988754322
Q ss_pred --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCC
Q 005235 576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg 645 (707)
+........++.+ ++..++.|+.+ ..+.+||+.+. + ...+... ......+.+ ++.+++.|+.++
T Consensus 191 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 264 (301)
T 2vpj_A 191 TPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG 264 (301)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence 2111122233333 56777888764 46899999764 2 3333211 111122222 566777776553
Q ss_pred -----cEEEEe
Q 005235 646 -----TAYVFH 651 (707)
Q Consensus 646 -----~I~Vwd 651 (707)
.|.+||
T Consensus 265 ~~~~~~v~~yd 275 (301)
T 2vpj_A 265 NSLLSSIECYD 275 (301)
T ss_dssp SSBEEEEEEEE
T ss_pred CcccccEEEEc
Confidence 455564
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.31 E-value=1.3 Score=44.84 Aligned_cols=141 Identities=10% Similarity=0.120 Sum_probs=72.9
Q ss_pred CCCEEEEEeCC-C--CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe----------CCeEEEEECCCC
Q 005235 505 RGDYLSTVMPA-G--ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST----------KKNIRVYDLLKQ 570 (707)
Q Consensus 505 ~g~~lat~s~d-g--~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s----------dg~I~iwDl~~~ 570 (707)
++..++.|+.+ + ....+.+||+.+..-... ++.....-.+++.. ++.+++.|+ -..+.+||+.+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56677777654 2 234788999988764311 12111111222222 455555553 234889999887
Q ss_pred eEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEE
Q 005235 571 RLIKK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFAS 640 (707)
Q Consensus 571 ~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaS 640 (707)
+-... +........++.+ ++..++.|+.+ ..+.+||+.+. ....+.. ......++.+ ++.+++.
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 53322 1111112233333 56777777654 35889998764 1222221 1112223333 6677888
Q ss_pred EeCC-----CcEEEEec
Q 005235 641 CSDD-----CTAYVFHG 652 (707)
Q Consensus 641 gs~D-----g~I~Vwd~ 652 (707)
|+.+ ..|.+||.
T Consensus 254 GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNT 270 (306)
T ss_dssp ECBCSSSBCCEEEEEET
T ss_pred eCcCCCeeeeeEEEEcC
Confidence 8754 35677743
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.24 E-value=1.7 Score=43.90 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-------CeEEEEECCCCeEE
Q 005235 505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-------KNIRVYDLLKQRLI 573 (707)
Q Consensus 505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-------g~I~iwDl~~~~~~ 573 (707)
++..++.|+.++. ...+.+||+.+..-... ++.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 5667777775542 24688899887764311 12111111222322 455555543 1 35899999887533
Q ss_pred EE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCCEEEEEeC
Q 005235 574 KK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 574 ~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~llaSgs~ 643 (707)
.. +........++.+ ++..++.|+.+ ..+.+||+.+. ....+.... .....+. -++.+++.|+.
T Consensus 187 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~ 260 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCA--VNGLLYVVGGD 260 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence 22 2222122233333 57777888764 36889998764 233332111 1111222 25677777775
Q ss_pred CC-----cEEEEec
Q 005235 644 DC-----TAYVFHG 652 (707)
Q Consensus 644 Dg-----~I~Vwd~ 652 (707)
++ .|.+||.
T Consensus 261 ~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 261 DGSCNLASVEYYNP 274 (302)
T ss_dssp CSSSBCCCEEEEET
T ss_pred CCCcccccEEEEcC
Confidence 53 4777754
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.20 E-value=10 Score=43.69 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=124.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~ 467 (707)
..|..|+.+| +..||..+++...... ....|.++.. .++ .|.+++.+ .|..++..+...
T Consensus 74 g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~--------------- 133 (758)
T 3ott_A 74 TYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKL--------------- 133 (758)
T ss_dssp TEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCE---------------
T ss_pred CcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeE---------------
Confidence 3566777666 7788988765432100 1335777654 355 46666554 677787654321
Q ss_pred ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-----cCCCe
Q 005235 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-----LHGLP 542 (707)
Q Consensus 468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-----~~~~V 542 (707)
..+... . .......|.++....+|...+. +. + .|..++..+......... ....|
T Consensus 134 ----------~~~~~~--~---~~l~~~~i~~i~~d~~g~lWig-t~-~---Gl~~~~~~~~~~~~~~~~~~~~~~~~~i 193 (758)
T 3ott_A 134 ----------TSFDTR--R---NGLPNNTIYSIIRTKDNQIYVG-TY-N---GLCRYIPSNGKFEGIPLPVHSSQSNLFV 193 (758)
T ss_dssp ----------EEECHH--H---HCCSCSCEEEEEECTTCCEEEE-ET-T---EEEEEETTTTEEEEECCCCCTTCSSCCE
T ss_pred ----------EEeccC--C---CCcCCCeEEEEEEcCCCCEEEE-eC-C---CHhhCccCCCceEEecCCCcccccccee
Confidence 111000 0 0011345778888778876654 33 2 577788776554311121 12347
Q ss_pred EEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-
Q 005235 543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC- 621 (707)
Q Consensus 543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~- 621 (707)
.++...+++..|.+|+++.|..||..+++...........|.++....+|.+.+ |+.+ -|.+++..+. . +..+..
T Consensus 194 ~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~-~-~~~~~~~ 269 (758)
T 3ott_A 194 NSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTT-P-LQHIIHD 269 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTS-C-CEEECCC
T ss_pred EEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCC-c-EEEEEcC
Confidence 888888877777777766789999887754322111234588888887776554 5544 5888887654 2 333321
Q ss_pred -------CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 622 -------HPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 622 -------h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
....|.++....+|.+.+ |+..| +.++
T Consensus 270 ~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 270 SRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp TTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred CCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 124589998888887554 44456 5444
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.74 Score=48.17 Aligned_cols=186 Identities=8% Similarity=0.009 Sum_probs=95.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEc--c-CCCccEEEE--EeCCeEEEEECCCCCchhcccccce
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG--EAIQYVAWN--P-LPELPVLAV--SVGQDVLILNTGLGNEEEQRRVKDL 461 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~--~~V~~v~~s--p-dg~~~lla~--s~d~~V~lwd~~~~~~~~~~~~~~v 461 (707)
.+++.++.||.|.-.|..+|+.+.+++.. .++....-. + ++ .++++ ..||.|..++..+|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~--~~~vv~p~~dG~l~a~~~~~G----------- 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETY--ETLIIEPFGDGNIYYFNAHQG----------- 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSS--EEEEECCSTTTEEEEEETTTE-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCC--cEEEEEECCCCEEEEEECCCC-----------
Confidence 47899999999999999999999998874 333321100 1 22 34444 46888888886544
Q ss_pred eeecccccccCCCCcEEEEecCCccceEEeccCCCeEE---EEE-----cCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235 462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS---VEW-----HRRGDYLSTVMPAGESRAIFMHQLSKKLSHR 533 (707)
Q Consensus 462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~---v~~-----sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~ 533 (707)
...|....... -..+++.. ... +..+..+++++.++ .+...|+.+++..
T Consensus 78 ---------------~~~~~~~~~~l----v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g---~l~ald~~tG~~~- 134 (339)
T 2be1_A 78 ---------------LQKLPLSIRQL----VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT---IMYTINMLNGEII- 134 (339)
T ss_dssp ---------------EEEEEEEHHHH----HTTCSEEEECC----------CCEEEEECEEEE---EEEEEETTTCCEE-
T ss_pred ---------------cEEeeeccccc----eeccccccCCCceeecccccccCCEEEEEecCC---EEEEEECCCCcEE-
Confidence 12232211100 01111111 000 01355777888877 9999999999887
Q ss_pred eeeccCCC--------eEEEEEe-----CCCCEEEEEe-CCeEEEEECCCCeEEEEE-----eCCCCC--e-EEEEEcCC
Q 005235 534 IPFKLHGL--------PVSSVFH-----PTRSIFFVST-KKNIRVYDLLKQRLIKKL-----ETGLKE--V-SSIAIHPA 591 (707)
Q Consensus 534 ~~~~~~~~--------V~~v~fs-----pd~~~l~v~s-dg~I~iwDl~~~~~~~~l-----~~~~~~--I-~sl~~spd 591 (707)
..+..... ..|.... -.+..++.+. +..|.+.+ ++|+ +..+ ...... + .+-.++.+
T Consensus 135 W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D 212 (339)
T 2be1_A 135 SAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKD 212 (339)
T ss_dssp EEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSS
T ss_pred EEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccC
Confidence 66622211 1112111 1134455554 67777766 4443 2111 111000 0 00001123
Q ss_pred CCEEEEEECCCcEEEEECCCCC
Q 005235 592 GDNLIVGSREGKLCWFDMDLSS 613 (707)
Q Consensus 592 g~~L~sGs~Dg~I~vwDl~~~~ 613 (707)
+.+ ++++.||.|.-+|..++.
T Consensus 213 g~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 213 GMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp SCC-EEEETTTEEEEECSTTCC
T ss_pred CcE-EEECCCCEEEEEECCCCc
Confidence 555 457788888888877663
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.72 E-value=5 Score=40.70 Aligned_cols=133 Identities=8% Similarity=0.013 Sum_probs=67.0
Q ss_pred CCCEEEEEeCC-----CCccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEEECCCCe
Q 005235 505 RGDYLSTVMPA-----GESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVYDLLKQR 571 (707)
Q Consensus 505 ~g~~lat~s~d-----g~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iwDl~~~~ 571 (707)
++..++.|+.+ .....+.++|+.+..-.. .++.....-.+++. -++.+++.|+ + ..+.+||+.+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 55666666632 123478899998775431 12211111122233 2445555554 1 469999998874
Q ss_pred EEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEE
Q 005235 572 LIKK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASC 641 (707)
Q Consensus 572 ~~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSg 641 (707)
-... +........++.+ ++..++.|+.++ .+.+||+.+. ....+..- ......+.+ ++.+++.|
T Consensus 177 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~v~G 250 (315)
T 4asc_A 177 WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLYAIG 250 (315)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEE
T ss_pred EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEEEEC
Confidence 3321 1111112233333 567788887654 4788898764 23333211 111122222 56777777
Q ss_pred eCC
Q 005235 642 SDD 644 (707)
Q Consensus 642 s~D 644 (707)
+.+
T Consensus 251 G~~ 253 (315)
T 4asc_A 251 GFA 253 (315)
T ss_dssp EEE
T ss_pred Ccc
Confidence 653
No 331
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.21 E-value=3.7 Score=41.19 Aligned_cols=141 Identities=7% Similarity=0.040 Sum_probs=74.2
Q ss_pred CCCEEEEEeCCC--CccEEEEEECCCCc---eee-eeeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeE
Q 005235 505 RGDYLSTVMPAG--ESRAIFMHQLSKKL---SHR-IPFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRL 572 (707)
Q Consensus 505 ~g~~lat~s~dg--~~~~V~Iwdl~~~~---~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~ 572 (707)
++..++.|+.++ ....+.++|+.+.. -.. .++.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 566677776543 12478999998876 321 122111111222222 455555554 2 4699999988753
Q ss_pred EE--EEeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEe
Q 005235 573 IK--KLETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 573 ~~--~l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs 642 (707)
.. .+........++.+ ++..++.|+.+ ..+.+||+.+. . ...+... ......+.+ ++.+++.|+
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 214 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG-H-WTNVTPMATKRSGAGVALL--NDHIYVVGG 214 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC-c-EEeCCCCCcccccceEEEE--CCEEEEEeC
Confidence 32 22222222233333 67777887765 45889998764 2 2322211 111122222 567777777
Q ss_pred CC-----CcEEEEec
Q 005235 643 DD-----CTAYVFHG 652 (707)
Q Consensus 643 ~D-----g~I~Vwd~ 652 (707)
.+ ..|.+||.
T Consensus 215 ~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNI 229 (301)
T ss_dssp BCSSSBCCCEEEEET
T ss_pred CCCCcccceEEEEeC
Confidence 54 35788854
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.91 E-value=5.6 Score=40.65 Aligned_cols=134 Identities=8% Similarity=0.023 Sum_probs=81.6
Q ss_pred EEcCCCCEEEEEe--CCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEE
Q 005235 501 EWHRRGDYLSTVM--PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKL 576 (707)
Q Consensus 501 ~~sp~g~~lat~s--~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l 576 (707)
.|+++|++|+... .++ ...|...++...... ....+.. ..|++++..|+-.+ ...|.+.++..+.....+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~-~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQT-ATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEETTEEEEEEESSSS-CEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EEEEeCCEEEEEeecCCC-CceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 6778899988776 333 447777777755433 2223322 45678888888766 478888888766543333
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 577 ETGLKEVSSIAIHPAGDNLIVGSRE--GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 577 ~~~~~~I~sl~~spdg~~L~sGs~D--g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
. + ... ..++|+|.+|+-.... ..|..-+++.+ -...|.. ..+ ..|+|.+.+|.-+++.+.-.|+
T Consensus 184 ~-~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~ 249 (302)
T 3s25_A 184 D-C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALC 249 (302)
T ss_dssp C-S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEE
T ss_pred C-C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEE
Confidence 2 2 222 3467999998877654 35777777644 2444542 233 3478888887766433223444
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.88 E-value=6 Score=48.82 Aligned_cols=159 Identities=8% Similarity=0.106 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----CCCeEEEEEeCCCCEEEEEe--------CCe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL----HGLPVSSVFHPTRSIFFVST--------KKN 561 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~----~~~V~~v~fspd~~~l~v~s--------dg~ 561 (707)
..|.-=.|-.. +.|+.++.. .|..|++.........| .| ...|..-..+++.++++..+ .|.
T Consensus 106 e~VvfWkWis~-~~l~lVT~~----aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 106 DDVTFWKWISL-NTVALVTDN----AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CCceEEEecCC-CeeEEEcCC----eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 34544456433 334444432 89999997643332344 33 34666777788999877532 378
Q ss_pred EEEEECCCCeEEEEEeCCCCCeEEEEEc--CC-CCEEEEEEC---CCcEEEEECCCC---Ccce-----EEeec---CCC
Q 005235 562 IRVYDLLKQRLIKKLETGLKEVSSIAIH--PA-GDNLIVGSR---EGKLCWFDMDLS---SKPY-----RVLKC---HPK 624 (707)
Q Consensus 562 I~iwDl~~~~~~~~l~~~~~~I~sl~~s--pd-g~~L~sGs~---Dg~I~vwDl~~~---~~~~-----~~l~~---h~~ 624 (707)
+.+|....+ ..+.+.+|......+.+. +. ...++.+.. .+++.|.++... ..++ ..+-. -..
T Consensus 181 mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 181 MQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (1630)
T ss_pred eeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence 999988754 334556665444333332 11 123332222 368999998643 1111 11111 112
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN 659 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~ 659 (707)
--.++..|+...++...+.-|.|++||+.+...+.
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 23466777878888888899999999766544433
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.82 E-value=3.8 Score=41.95 Aligned_cols=132 Identities=8% Similarity=0.040 Sum_probs=76.2
Q ss_pred cCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--C-------------CeEEEEEC
Q 005235 503 HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--K-------------KNIRVYDL 567 (707)
Q Consensus 503 sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--d-------------g~I~iwDl 567 (707)
+.+|.++....... ...|...+...... ..+.. -.+--|++++.+|+.+. + ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d-~~~ly~~~~dg~~~--~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTND-NGRLYAMNIDGSNI--HKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGG-TTEEEEEETTSCSC--EEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCC-CceEEEEcCCCCCC--EEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34677776665322 23666666655443 23311 12345688898888765 2 35777887
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--C--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--R--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643 (707)
Q Consensus 568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~ 643 (707)
..++. ..+... . +..|+++|+.|+-.. . ...|+..+++. .....+..+.. .+|++++..|+-.+.
T Consensus 96 dg~~~-~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG--s~~~~lt~~~~----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 96 NGHGS-TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG--EEKKKIKNHYL----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TSCCC-EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS--CCCEEEESSCC----CCSEEETTEEEEECT
T ss_pred CCCcc-eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC--CCeEEEeCCCc----eEeeEECCEEEEEeC
Confidence 76643 233322 1 236778899988776 2 34466666653 33455554433 457888887776654
Q ss_pred -CCcEEEEe
Q 005235 644 -DCTAYVFH 651 (707)
Q Consensus 644 -Dg~I~Vwd 651 (707)
...|.+.+
T Consensus 165 g~~~Iy~~~ 173 (302)
T 3s25_A 165 KNGQLYRYD 173 (302)
T ss_dssp TTCCEEEEE
T ss_pred CCceEEEEE
Confidence 45666663
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.62 E-value=13 Score=41.19 Aligned_cols=203 Identities=9% Similarity=0.041 Sum_probs=114.3
Q ss_pred cEEEEEe-CCCcEEEEeCCCCeEEEEEec--CCcEEEEEEc--cCCCccEEEEEeCCeEEEEECCCCCch-hccccccee
Q 005235 389 YLEYKGS-TDGTVRIWEVESGRCLRVLEI--GEAIQYVAWN--PLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLL 462 (707)
Q Consensus 389 ~~l~sgs-~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~s--pdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~ 462 (707)
.+++.-. ....|-.-++..-+|-+.++. ...+.+++|- |+.. ++++.+.. .|=+ +..+... +.. ... +
T Consensus 143 rylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~-~~P~--pndg~~~~~~~-~~~-y 216 (638)
T 3sbq_A 143 KYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEF-IIPH--PNDGKVFDLQD-ENS-Y 216 (638)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECS-CEES--SCSSSCCCTTS-TTE-E
T ss_pred EEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEeccee-eccC--CCCCcccccCC-hhh-c
Confidence 3455443 455677778888888777776 7889999997 5652 55555543 2221 1111100 000 000 1
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC-------------------------
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE------------------------- 517 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~------------------------- 517 (707)
..|. .-+..+-.........+....+...++|.|.++.|.+..
T Consensus 217 -~~f~-----------~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie 284 (638)
T 3sbq_A 217 -TMYN-----------AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE 284 (638)
T ss_dssp -EEEE-----------EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred -eEEE-----------EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence 1111 001111111111112334455666777888777776540
Q ss_pred ----------cc--EEEEEECCC----Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC------e-
Q 005235 518 ----------SR--AIFMHQLSK----KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ------R- 571 (707)
Q Consensus 518 ----------~~--~V~Iwdl~~----~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~------~- 571 (707)
.+ .|.+.|.+. +... ..+ ........+.++|||+++++++ +.+|.++|+.+. +
T Consensus 285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~-~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~ 363 (638)
T 3sbq_A 285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSKF-TRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL 363 (638)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSCBTTBCCSS-EEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC
T ss_pred HHHhcCCeEEECCCCeeEEccccccccCCce-EEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc
Confidence 11 345555544 2111 112 4445566788999999999998 799999998741 1
Q ss_pred ------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235 572 ------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL 611 (707)
Q Consensus 572 ------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~ 611 (707)
.+.....+ ......+|.++|....+-.-|..|.-|++..
T Consensus 364 ~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 364 ADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23344444 3467889999995555566899999999974
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.47 E-value=1.1 Score=46.84 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=75.5
Q ss_pred cEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEE
Q 005235 432 PVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLST 511 (707)
Q Consensus 432 ~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat 511 (707)
.+++++.||.|.-+|..+|. .+|................. .+.+..++.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~--------------------------~~W~~~~~~~~p~~~~~~~~-----~~~~~~~~v 60 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGH--------------------------IIWSIEPENFQPLIEIQEPS-----RLETYETLI 60 (339)
T ss_dssp EEEEEETTSCEEEEETTTTE--------------------------EEEEECGGGSCCSEECCCSC-----TTTSSEEEE
T ss_pred EEEEEeCCCeEEEEECCCCc--------------------------EEEEecCCccCCcEEecCCc-----cccCCcEEE
Confidence 68888899999999987763 34554433100000000000 012223333
Q ss_pred E--eCCCCccEEEEEECCCCceeeeeecc-----CCCeEE---EEE-e----CCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235 512 V--MPAGESRAIFMHQLSKKLSHRIPFKL-----HGLPVS---SVF-H----PTRSIFFVST-KKNIRVYDLLKQRLIKK 575 (707)
Q Consensus 512 ~--s~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~~V~~---v~f-s----pd~~~l~v~s-dg~I~iwDl~~~~~~~~ 575 (707)
+ +.|| .|..++..++... .++.. ..++.. ... . ..+..+++++ ++.+...|+.+|+.+..
T Consensus 61 v~p~~dG---~l~a~~~~~G~~~-~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 61 IEPFGDG---NIYYFNAHQGLQK-LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp ECCSTTT---EEEEEETTTEEEE-EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred EEECCCC---EEEEEECCCCcEE-eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 3 4566 8888887776444 44411 111211 000 0 0344566666 89999999999999999
Q ss_pred EeCCCCC-------eEEEEEc-----CCCCEEEEEECCCcEEEEE
Q 005235 576 LETGLKE-------VSSIAIH-----PAGDNLIVGSREGKLCWFD 608 (707)
Q Consensus 576 l~~~~~~-------I~sl~~s-----pdg~~L~sGs~Dg~I~vwD 608 (707)
+...... ..|.... -.+..|+.|..+..+.+.+
T Consensus 137 ~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 137 FGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp ESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred EecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 8754211 1122211 1246788888777777766
No 337
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.09 E-value=5.1 Score=40.29 Aligned_cols=141 Identities=10% Similarity=-0.056 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCC-CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEECCCCeEEEE
Q 005235 505 RGDYLSTVMPAG-ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYDLLKQRLIKK 575 (707)
Q Consensus 505 ~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwDl~~~~~~~~ 575 (707)
++..++.|+.+. ....+.++|+.+..-... .+.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 556666666541 234888999988764311 12111111222222 455555554 3 4699999988754322
Q ss_pred --EeCCCCCeEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCCEEEEE
Q 005235 576 --LETGLKEVSSIAIHPAGDNLIVGSR---------EGKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYPLFASC 641 (707)
Q Consensus 576 --l~~~~~~I~sl~~spdg~~L~sGs~---------Dg~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~llaSg 641 (707)
+........++.+ ++..++.|+. -..+.+||+.+. ....+.... ..-..+.+ ++.+++.|
T Consensus 134 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 207 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVG 207 (306)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEe
Confidence 1111112223333 5667777754 345889998765 233332111 11122222 56677777
Q ss_pred eCC-----CcEEEEec
Q 005235 642 SDD-----CTAYVFHG 652 (707)
Q Consensus 642 s~D-----g~I~Vwd~ 652 (707)
+.+ ..|.+||.
T Consensus 208 G~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDI 223 (306)
T ss_dssp CEETTEEBCCEEEEET
T ss_pred CCCCCCCCceEEEeeC
Confidence 654 35777754
No 338
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.05 E-value=11 Score=37.90 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=110.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC--CCCEEEEEe-CCeEEEEECCC--
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP--TRSIFFVST-KKNIRVYDLLK-- 569 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp--d~~~l~v~s-dg~I~iwDl~~-- 569 (707)
+.+..+.-....++|+..+..|.-..+.+|++........ +.....|..+.. + +...++.++ +|.|+...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3455544444556666666666222333444433222112 444556666644 4 456777777 89999988654
Q ss_pred ----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCCEEEEEEcCCCCE
Q 005235 570 ----QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKDITNVAFHRSYPL 637 (707)
Q Consensus 570 ----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~I~~vafspdg~l 637 (707)
+.....+..+ ..+..+......+.|+..+..|.+..+....- +...-.|.. ...|.++...+++..
T Consensus 102 ~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2222234433 44555555556678999999999999986421 011111222 245666655566678
Q ss_pred EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
++.++..|.++...+..+.....+.. -+..+ ..... +..+........|+..+..|.+..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gk--Gv~~i-~~~~~----lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVK--GTEVS-GTKDT----LVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCC--CEECC-CSSSC----EEEEEEESSEEEEEEEETTSCEEE
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCc--ceEEE-cCCCc----EEEEEEeCCCCEEEEEcCCCeEEE
Confidence 88999999999997765432222211 12222 11122 554444334446666777777654
No 339
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.58 E-value=3.4 Score=41.58 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCCC----ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235 505 RGDYLSTVMPAGE----SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI 573 (707)
Q Consensus 505 ~g~~lat~s~dg~----~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~ 573 (707)
++..++.|+.++. ...+.+||+.+..-... ++.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 5666666655432 24688999987755311 12111111222222 455666654 3 46999999887533
Q ss_pred EE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 005235 574 KK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLS 612 (707)
Q Consensus 574 ~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~ 612 (707)
.. +........++.+ ++..++.|+.++ .+.+||+.+.
T Consensus 234 ~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 234 QVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 22 1111111223333 567777877653 4788888754
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.53 E-value=3.7 Score=41.56 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235 505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK 575 (707)
Q Consensus 505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~ 575 (707)
++..++.|+.++. ...+.++|+.+..-... ++.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 5666666654331 23688999887654311 12111111122222 455555554 2 5699999987753321
Q ss_pred --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235 576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS 612 (707)
Q Consensus 576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~ 612 (707)
+........++.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 200 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 200 TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 1112122233333 57777888765 45899998764
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.40 E-value=3.6 Score=47.43 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCceeeee----e-ccCCCeEEEEEeCC-CCEEEEEe---C-----CeEEEEECCC
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F-KLHGLPVSSVFHPT-RSIFFVST---K-----KNIRVYDLLK 569 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~-~~~~~V~~v~fspd-~~~l~v~s---d-----g~I~iwDl~~ 569 (707)
.++..++.|+.++.. .+.+||..+..-.... . .......++++... +.+++.|+ + ..+.+||+.+
T Consensus 499 ~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 499 PDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred cCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 378888888876644 7999999887653211 1 11222334566655 55555554 2 4589999988
Q ss_pred CeE-----EEEEeC----CCCCeEEEEEcCCCCEEEEEECC--------CcEEEEECCCC
Q 005235 570 QRL-----IKKLET----GLKEVSSIAIHPAGDNLIVGSRE--------GKLCWFDMDLS 612 (707)
Q Consensus 570 ~~~-----~~~l~~----~~~~I~sl~~spdg~~L~sGs~D--------g~I~vwDl~~~ 612 (707)
..- -..+.. ...... ++...++..++.|+.+ ..|.+||+.+.
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 761 122211 111223 3333337778888753 45889998764
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.01 E-value=2.3 Score=44.01 Aligned_cols=123 Identities=7% Similarity=-0.047 Sum_probs=54.6
Q ss_pred cEEEEEECCCCceeee-eeccCCCe-EEEEEeCCCCEEEEEe-------CCeEEEEEC--CCCeEEE--EEeCCCCCeEE
Q 005235 519 RAIFMHQLSKKLSHRI-PFKLHGLP-VSSVFHPTRSIFFVST-------KKNIRVYDL--LKQRLIK--KLETGLKEVSS 585 (707)
Q Consensus 519 ~~V~Iwdl~~~~~~~~-~~~~~~~V-~~v~fspd~~~l~v~s-------dg~I~iwDl--~~~~~~~--~l~~~~~~I~s 585 (707)
..+.+||+.+..-... ++...... .+++.. ++.+++.|+ ...+.+||+ .+.+-.. .+........+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4899999988765311 12211111 233333 445555543 245778887 4443221 11111111111
Q ss_pred EEEcCCCCEEEEEECC----------------------CcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235 586 IAIHPAGDNLIVGSRE----------------------GKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCS 642 (707)
Q Consensus 586 l~~spdg~~L~sGs~D----------------------g~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs 642 (707)
.+...++..++.|+.+ ..+.+||+.+.. ..+..+......-.+ ..-++.+++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence 1222356777777642 247789987542 112222211111122 223667777777
Q ss_pred CC
Q 005235 643 DD 644 (707)
Q Consensus 643 ~D 644 (707)
.+
T Consensus 325 ~~ 326 (357)
T 2uvk_A 325 ET 326 (357)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.66 E-value=15 Score=36.93 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=71.0
Q ss_pred cCCCCEEEEEeC----CCC----ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C--------CeEEE
Q 005235 503 HRRGDYLSTVMP----AGE----SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K--------KNIRV 564 (707)
Q Consensus 503 sp~g~~lat~s~----dg~----~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d--------g~I~i 564 (707)
..++..++.|+. ++. ...+.++|..+..-... ++.....-.+++.. ++.+++.|+ + ..+.+
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence 346777777773 111 12478888887654311 11111111122222 445555544 1 46999
Q ss_pred EECCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEEC-C-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcC
Q 005235 565 YDLLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGSR-E-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHR 633 (707)
Q Consensus 565 wDl~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs~-D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafsp 633 (707)
||+.+.+-.. .+........++. -++..++.|+. + ..+.+||+.+. ....+... ...-.++.+
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-- 195 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH-- 195 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--
T ss_pred ECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--
Confidence 9998875322 1111111222333 35667777776 2 45889998764 12222211 111122222
Q ss_pred CCCEEEEEeCCC-----cEEEEec
Q 005235 634 SYPLFASCSDDC-----TAYVFHG 652 (707)
Q Consensus 634 dg~llaSgs~Dg-----~I~Vwd~ 652 (707)
++.+++.|+.++ .+.+||.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCEEEEEeccCCCCccceEEEEEC
Confidence 667777777654 4666743
No 344
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.51 E-value=18 Score=37.40 Aligned_cols=206 Identities=10% Similarity=0.049 Sum_probs=112.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC--ceeeee------eccCCCeEEEEEeC---CCCEEEEEe-CCe
Q 005235 494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK--LSHRIP------FKLHGLPVSSVFHP---TRSIFFVST-KKN 561 (707)
Q Consensus 494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~--~~~~~~------~~~~~~V~~v~fsp---d~~~l~v~s-dg~ 561 (707)
...+..+......+.|+..+..|.--.+.+|++... .....+ +.....|.++..-+ +..+++.++ +|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 445555555556667777776662233444555432 111122 23345666665443 466777777 899
Q ss_pred EEEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CC---Ccc---eE--EeecCCC
Q 005235 562 IRVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD--LS---SKP---YR--VLKCHPK 624 (707)
Q Consensus 562 I~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~--~~---~~~---~~--~l~~h~~ 624 (707)
|+...+.. +.....+..+ ..+..+......+.|+..+..|.+..|... .- .+. .+ .|. ...
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d 198 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDD 198 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTC
T ss_pred EEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCC
Confidence 99988653 2222234443 345555444566788899999999999876 21 110 11 122 234
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235 625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704 (707)
Q Consensus 625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl 704 (707)
.|.++...+.+..|+.++..|.++.-.+..+.....+........+..-... +..+........|+..+.+|.+.-
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~----lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR----LVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS----EEEEEEECTTCEEEEEEGGGCEEE
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe----EEEEEEeCCCccEEEEcCCCeEEE
Confidence 5777766666678899999999998876644322121111111112111111 444444444456666666666544
Q ss_pred E
Q 005235 705 Y 705 (707)
Q Consensus 705 W 705 (707)
+
T Consensus 275 ~ 275 (327)
T 3uc1_A 275 T 275 (327)
T ss_dssp E
T ss_pred E
Confidence 3
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.67 E-value=33 Score=39.34 Aligned_cols=293 Identities=11% Similarity=0.028 Sum_probs=152.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc---------cc
Q 005235 389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR---------RV 458 (707)
Q Consensus 389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~---------~~ 458 (707)
..+..|.. +-|..++..+++....... ...|.++....+| .|.+++ ++-+.+++..+....... ..
T Consensus 203 ~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (758)
T 3ott_A 203 QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG--DLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTN 278 (758)
T ss_dssp TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC--CEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC--CEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCc
Confidence 34455553 3477888887764322111 4568888888888 577777 456888887654321110 01
Q ss_pred cceeeeccc----ccccCCCCcEEEEecCCccceEEe------ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC
Q 005235 459 KDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL------RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK 528 (707)
Q Consensus 459 ~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~------~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~ 528 (707)
..+.++..- +..+...| +.............. .....|.++.-..+|...+.. .+ .+..++..+
T Consensus 279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~----Gl~~~~~~~ 352 (758)
T 3ott_A 279 NIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-AN----GLIRFTDPA 352 (758)
T ss_dssp SCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TT----EEEEESCTT
T ss_pred CeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CC----cceeecccc
Confidence 112222110 22222223 222211111100000 112457888887788765543 32 466666554
Q ss_pred Cceee-eeec--------cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-C-----CCCCeEEEEEcCCCC
Q 005235 529 KLSHR-IPFK--------LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-T-----GLKEVSSIAIHPAGD 593 (707)
Q Consensus 529 ~~~~~-~~~~--------~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~-----~~~~I~sl~~spdg~ 593 (707)
+.... ..+. ....|.++.-..++.+- +|+++.|..||..+++...-.. . ....|.++...++|
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g- 430 (758)
T 3ott_A 353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG- 430 (758)
T ss_dssp SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS-
T ss_pred cccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-
Confidence 32110 1121 12357888887777654 4557789999998876543211 1 12458888887766
Q ss_pred EEEEEECCCcEEEEECCCC----Ccce---EEeec----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCC
Q 005235 594 NLIVGSREGKLCWFDMDLS----SKPY---RVLKC----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP 662 (707)
Q Consensus 594 ~L~sGs~Dg~I~vwDl~~~----~~~~---~~l~~----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~ 662 (707)
.|.+|+..+-|.++|..+. ...+ ..+.. ....|.++...++|.+.+.++..+-|..++.. +..
T Consensus 431 ~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~------~~~ 504 (758)
T 3ott_A 431 QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPR------TRE 504 (758)
T ss_dssp EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETT------TTE
T ss_pred CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCC------CCc
Confidence 5666887777889986521 0111 11111 12358999999999977644444457777532 221
Q ss_pred cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705 (707)
Q Consensus 663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW 705 (707)
+..+..........+.++....+|.+.++. ..| |..|
T Consensus 505 ----~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 505 ----VTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp ----EEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEE
T ss_pred ----eEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEE
Confidence 122211100001127777777777755443 444 4444
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.54 E-value=19 Score=36.28 Aligned_cols=105 Identities=9% Similarity=0.067 Sum_probs=54.7
Q ss_pred CCCEEEEEeCC--C--CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEEECCCCeE
Q 005235 505 RGDYLSTVMPA--G--ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVYDLLKQRL 572 (707)
Q Consensus 505 ~g~~lat~s~d--g--~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iwDl~~~~~ 572 (707)
++..++.|+.+ + ....+.++|+.+..-... ++.....-.+++. .++.+++.|+ + ..+.+||+.+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56666666653 1 124688889887654311 1111111112222 3455555553 1 4599999988753
Q ss_pred EEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 005235 573 IKK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLS 612 (707)
Q Consensus 573 ~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~ 612 (707)
... +........++.+ ++..++.|+.++ .+.+||+.+.
T Consensus 188 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 322 1111122233333 567777776543 4678888764
No 347
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.20 E-value=8.3 Score=38.87 Aligned_cols=105 Identities=9% Similarity=0.043 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235 505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK 575 (707)
Q Consensus 505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~ 575 (707)
++..++.|+.++. ...+.++|+.+..-... .+.....-.+++.. ++.+++.|+ + ..+.+||+.+.+-...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 5666777765542 24788999887754311 11111111222223 455666654 3 5699999988753321
Q ss_pred --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235 576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS 612 (707)
Q Consensus 576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~ 612 (707)
+........++.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 247 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 247 APMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111112233333 56777777754 34677777653
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.76 E-value=6.1 Score=43.08 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--CcceEEee---------cCCCCEEEEEEcCC----CCEEEEEeC
Q 005235 580 LKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS--SKPYRVLK---------CHPKDITNVAFHRS----YPLFASCSD 643 (707)
Q Consensus 580 ~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~--~~~~~~l~---------~h~~~I~~vafspd----g~llaSgs~ 643 (707)
-.....|+|.|+|. .|+++...|.|++++.+.. ..++..+. .....+..|+|+|+ +.++++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34568999999996 5666678899999975422 12333222 11356889999997 444444332
Q ss_pred --CC--------cEEEEeccccc---CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235 644 --DC--------TAYVFHGMVYS---DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700 (707)
Q Consensus 644 --Dg--------~I~Vwd~~~~~---Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg 700 (707)
++ ..+|..+.... +.........+..+.... .......|+|.|||.+.++.|..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~--~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH--RKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS--SSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC--CcccCCcEeECCCCcEEEEeCCCC
Confidence 11 13443322211 110000001122222100 011278899999998777777543
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.65 E-value=44 Score=36.19 Aligned_cols=30 Identities=10% Similarity=-0.106 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235 418 EAIQYVAWNPLPELPVLAVSVGQDVLILNT 447 (707)
Q Consensus 418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~ 447 (707)
...+.|+|.|+|...++++...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 566899999998335888899999999864
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.57 E-value=29 Score=34.75 Aligned_cols=122 Identities=7% Similarity=-0.038 Sum_probs=54.0
Q ss_pred EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235 520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sG 598 (707)
.|..|-.........+......|..++...... ++.. +|.|..|-... +++- .-......|..++.. ..+.++-
T Consensus 82 ~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs-~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G--~~~~~~l 156 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS-YALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGG--VYTALAV 156 (282)
T ss_dssp EEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE-EEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEEC--SSEEEEE
T ss_pred EEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE-EEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcc--cCEEEEE
Confidence 666666543322212333334566666554432 3334 77777776543 1110 000111335555543 2233333
Q ss_pred ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 599 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651 (707)
Q Consensus 599 s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd 651 (707)
+ ||.|+.|-.....++- .-..-...|..|+...... +|. .||.|..|=
T Consensus 157 ~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG 204 (282)
T 3qhy_B 157 K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWG 204 (282)
T ss_dssp E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEE
T ss_pred E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEE
Confidence 3 6777777654322211 0001123466665543322 222 477777773
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=79.42 E-value=29 Score=39.67 Aligned_cols=149 Identities=7% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCCEEEEEeCCCC---ccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-C--CeEEEEECCCCeEEEEEe
Q 005235 505 RGDYLSTVMPAGE---SRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-K--KNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 505 ~g~~lat~s~dg~---~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d--g~I~iwDl~~~~~~~~l~ 577 (707)
+|..++.|+.++. ...+.+||+.+..-.. .++.....-.+++...++.+++.|+ + +.+.+||+.+.+-...-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 6777777776542 2478899998865431 1122111222333334677777765 3 379999998875332211
Q ss_pred -----CCCCCeEEEEEcCC-CCEEEEEEC--C-----CcEEEEECCCCCc----ceEEeec---CCCCEEEEEEcCCCCE
Q 005235 578 -----TGLKEVSSIAIHPA-GDNLIVGSR--E-----GKLCWFDMDLSSK----PYRVLKC---HPKDITNVAFHRSYPL 637 (707)
Q Consensus 578 -----~~~~~I~sl~~spd-g~~L~sGs~--D-----g~I~vwDl~~~~~----~~~~l~~---h~~~I~~vafspdg~l 637 (707)
.......++.+..+ +..++.|+. + ..+.+||+.+..- ....+.. ....-.+++...++.+
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 11122334555655 667778876 2 3588999987630 0222221 1111112233333677
Q ss_pred EEEEeCC--------CcEEEEecc
Q 005235 638 FASCSDD--------CTAYVFHGM 653 (707)
Q Consensus 638 laSgs~D--------g~I~Vwd~~ 653 (707)
++.|+.+ ..|.+||..
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETT
T ss_pred EEECCccCCCCCCCCCeEEEEECC
Confidence 7777743 458888543
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.34 E-value=94 Score=35.57 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=70.4
Q ss_pred ccEEEEEECCCCceee-eee-ccCCCe-EEEEEeCCCC----EEEE-Ee-C---CeEEEEECCC--CeEEEEEeCCCCCe
Q 005235 518 SRAIFMHQLSKKLSHR-IPF-KLHGLP-VSSVFHPTRS----IFFV-ST-K---KNIRVYDLLK--QRLIKKLETGLKEV 583 (707)
Q Consensus 518 ~~~V~Iwdl~~~~~~~-~~~-~~~~~V-~~v~fspd~~----~l~v-~s-d---g~I~iwDl~~--~~~~~~l~~~~~~I 583 (707)
...|+.|.+-+....- ..| .....+ .++..++++. ++++ .+ + ..+.+.++.. ++. ..+......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-
Confidence 4689999988775441 234 323333 3445566665 2333 32 2 4567777653 432 333333221
Q ss_pred EEEEEcCCCCEEEEE----------ECCCcEEEEECCCC------CcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCC
Q 005235 584 SSIAIHPAGDNLIVG----------SREGKLCWFDMDLS------SKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDC 645 (707)
Q Consensus 584 ~sl~~spdg~~L~sG----------s~Dg~I~vwDl~~~------~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg 645 (707)
.+..+.++.+++.. ...++|.+.|+... ....+.+-.+ ...+..+.+..+ .++++...++
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~ 370 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV 370 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence 22334455555532 24678999998763 1223443223 346778888876 5777888887
Q ss_pred cEEEE
Q 005235 646 TAYVF 650 (707)
Q Consensus 646 ~I~Vw 650 (707)
.-+|+
T Consensus 371 ~~~l~ 375 (711)
T 4hvt_A 371 VAKVV 375 (711)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
No 353
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.26 E-value=58 Score=33.08 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=27.3
Q ss_pred CeEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEECC
Q 005235 560 KNIRVYDLLKQRLIKK--LETGLKEVSSIAIHPAGDNLIVGSR------EGKLCWFDMD 610 (707)
Q Consensus 560 g~I~iwDl~~~~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~------Dg~I~vwDl~ 610 (707)
..+.+||+.+.+-... +......-.+++.. ++..++.|+. ...+.+||++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d 225 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFT 225 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEec
Confidence 5799999988753322 22111111233332 5667777654 3457778873
No 354
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=76.29 E-value=70 Score=32.46 Aligned_cols=193 Identities=11% Similarity=0.063 Sum_probs=104.2
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCceee--------eeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC---CC-
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHR--------IPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL---KQ- 570 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--------~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~---~~- 570 (707)
++..++++.+.+| .|+--.+.....+. ..+.....+..+........++..+ .|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G---~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKG---FLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTC---BEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCC---EEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 3556778888877 66655543321110 1123334455554444444555444 7877666543 11
Q ss_pred -----eE---EEEEeCCCCCeEEE-EEcC--CCCEEEEEECCCcEEEEECCCCC------cceEEeecCCCCEEEEEEcC
Q 005235 571 -----RL---IKKLETGLKEVSSI-AIHP--AGDNLIVGSREGKLCWFDMDLSS------KPYRVLKCHPKDITNVAFHR 633 (707)
Q Consensus 571 -----~~---~~~l~~~~~~I~sl-~~sp--dg~~L~sGs~Dg~I~vwDl~~~~------~~~~~l~~h~~~I~~vafsp 633 (707)
.. .-.+.... .|.++ .+.. +..+|+..+..|.++...+..-. ...-.+.. ...+..+....
T Consensus 83 r~~~G~~i~~~l~l~~~e-~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 83 RASKGQNISELINLGDQE-EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp -----CBGGGTSCCCTTC-CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred ccCCCcChhhccCCCCCC-EEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence 10 01122332 34444 3321 46788899999999988874321 11112332 34566665555
Q ss_pred CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
....++..+.+|.+..+..........+...+..-.|... .. |.++....++..|++.+..|.++...
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-d~----vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-DL----FVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-CC----EEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-CE----EEEEEEECCCCeEEEEECCCceEEEE
Confidence 5567888899999999977633222222233223333332 22 67776666667788888888877654
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.06 E-value=74 Score=32.61 Aligned_cols=187 Identities=9% Similarity=0.021 Sum_probs=95.2
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCcee------eeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC--C------
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSH------RIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL--K------ 569 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~------~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~--~------ 569 (707)
+..++++++..| .++.-.+.....+ ...+.....+..+........|+..+ .|.+..+... .
T Consensus 108 ~e~~~v~~T~~G---~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 108 DAPYLVLATRNG---LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp SSSEEEEEETTS---EEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCT
T ss_pred CCCEEEEEcCCC---EEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCc
Confidence 577999999988 7777765442211 02233345566655554555555555 7888887766 2
Q ss_pred ---CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC------cceEEee--cCCCCEEEEEEcCCCCEE
Q 005235 570 ---QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS------KPYRVLK--CHPKDITNVAFHRSYPLF 638 (707)
Q Consensus 570 ---~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~------~~~~~l~--~h~~~I~~vafspdg~ll 638 (707)
|.....|... ..|.++...+.+.+|++.+..|.++.-.+..-. +-+..++ .-...+-.+........+
T Consensus 185 ~a~Gv~~i~L~~~-d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 185 ATSGVQGMRFNID-DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp TSBCEESSCCCTT-CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred CCCCeeeecCCCC-CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccE
Confidence 1111223322 446666666667799999999999888764311 1122222 112345555444445566
Q ss_pred EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCC
Q 005235 639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADS 700 (707)
Q Consensus 639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg 700 (707)
+..+.+|.+.-+.......+......+.+-.+... .. |.+++..+. ..-+++.+.+|
T Consensus 264 ~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~-d~----vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 264 YAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG-DT----LLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTT-CC----EEEEEECC-------------
T ss_pred EEEcCCCeEEEEehhhccccCCCCCCeEeEecCCC-CE----EEEEEEcCCCcceEEEEecCC
Confidence 66778888888866532222222222222222221 12 666665543 34466555544
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.94 E-value=76 Score=32.20 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc--eee------eeeccCCCeEEEEEeC---CCCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL--SHR------IPFKLHGLPVSSVFHP---TRSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~--~~~------~~~~~~~~V~~v~fsp---d~~~l~v~s-dg~I 562 (707)
..+..+......+.++..+..|.-..+.++++.... ... ..+.....|.++...+ +..+|+.++ .|.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 444455555556677777777722223333332221 100 1233344566554433 345555555 8999
Q ss_pred EEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----C--cceEEeec-CCCCEEE
Q 005235 563 RVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS----S--KPYRVLKC-HPKDITN 628 (707)
Q Consensus 563 ~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~----~--~~~~~l~~-h~~~I~~ 628 (707)
+...+.. |.....+... ..+-.+.....+..|+..+.+|.+..|.+..- . .=++.++- ....|.+
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~~-d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~ 205 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLNDK-DFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVK 205 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEE
T ss_pred EEEEHHHhhccCCCcEEEEecCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEE
Confidence 8888742 2223334443 44555555455678889999999999987531 0 11122211 1345666
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
+..-.++..+++.+..|..+.+.+..+
T Consensus 206 ~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 206 VLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEECCCCeEEEEECCCceEEEEHHHh
Confidence 655555667888899999999987654
No 357
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=73.89 E-value=80 Score=31.96 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=98.1
Q ss_pred CCCEEEEEeCCCCccEEEEEECCCCceee--------eeeccCCCeEEEEEeCCCCEEE-EEeCCeEEEEEC---CC---
Q 005235 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHR--------IPFKLHGLPVSSVFHPTRSIFF-VSTKKNIRVYDL---LK--- 569 (707)
Q Consensus 505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--------~~~~~~~~V~~v~fspd~~~l~-v~sdg~I~iwDl---~~--- 569 (707)
+..++++.+.+| .|+--.+.....+. ..+.....+..+........|+ ..+.|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G---~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 2 QEDVVVTLSHQG---YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCEEEEEEETTS---EEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCcEEEEEeCCC---EEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 345677777777 66655554322210 1122334444444433344444 444777655543 22
Q ss_pred ---CeEEE---EEeCCCCCeEEE-EEc--CCCCEEEEEECCCcEEEEECCCC---C-cceE--EeecCCCCEEEEEEcCC
Q 005235 570 ---QRLIK---KLETGLKEVSSI-AIH--PAGDNLIVGSREGKLCWFDMDLS---S-KPYR--VLKCHPKDITNVAFHRS 634 (707)
Q Consensus 570 ---~~~~~---~l~~~~~~I~sl-~~s--pdg~~L~sGs~Dg~I~vwDl~~~---~-~~~~--~l~~h~~~I~~vafspd 634 (707)
|..+. .+... ..|.++ .+. .++.+|+..+..|.++-..+..- . .-+. .+..+ ..+..+.....
T Consensus 79 ~a~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQD-ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp SSCCEEGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECT
T ss_pred CCCCeEhhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCC
Confidence 22221 23323 335554 332 35668999999999998876421 1 1111 12333 45555555555
Q ss_pred CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235 635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706 (707)
Q Consensus 635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd 706 (707)
...++..+.+|.+..+.......+......+..-.|... .. |.++....++..|++.+..|.++-..
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~-d~----Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG-DK----VVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-CC----EEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCC-CE----EEEEEEecCCCEEEEEEcCCceEEEE
Confidence 557778889999888876532222222222222223222 22 66666555667788888888877553
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.06 E-value=86 Score=31.14 Aligned_cols=140 Identities=8% Similarity=-0.048 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC-eEE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ-RLI 573 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~-~~~ 573 (707)
..|..|+... .+.+... +| .|..|-.........+......|..++...... ++.. ++.|..|-.... ++-
T Consensus 102 ~~v~~ia~G~--~hs~al~-~G---~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 102 SGVDAIAAGA--WASYALK-DG---KVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp SSEEEEEEET--TEEEEEE-TT---EEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEEE-TTEEEEEECCTTSTTS
T ss_pred CCeEEEECcC--CEEEEEe-CC---eEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEEE-CCEEEEecCCCCCCCC
Confidence 3566666543 3344444 77 888887655332212333345677776554332 3333 899999976532 211
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650 (707)
Q Consensus 574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw 650 (707)
.-..-...|..|+... .+.++- .+|.|+.|=.....++-... .....|..|+......++++ ||.|..|
T Consensus 174 -~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 174 -VPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp -CCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred -CceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence 0000123466666643 333333 58999999765432211000 11234667766544333333 9999999
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=70.81 E-value=97 Score=31.63 Aligned_cols=160 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc--eeee------eeccCCCeEEEEEeCC---CCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL--SHRI------PFKLHGLPVSSVFHPT---RSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~--~~~~------~~~~~~~V~~v~fspd---~~~l~v~s-dg~I 562 (707)
+.+..+......+.|+..+..|.--.+.++++.... .... .+.....|.++...++ ..+++.++ +|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 344444444556677777776622223334443221 1101 1233445665544332 55666667 8999
Q ss_pred EEEECC--------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------CcceEEeec-CCCCEE
Q 005235 563 RVYDLL--------KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS------SKPYRVLKC-HPKDIT 627 (707)
Q Consensus 563 ~iwDl~--------~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~------~~~~~~l~~-h~~~I~ 627 (707)
+...+. .+.....+... ..+-.+......+.|+..+.+|.+..|....- ..-++.++- -...|.
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 998874 12222234434 44555545455678889999999999987421 011222221 123466
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEecccc
Q 005235 628 NVAFHRSYP-LFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 628 ~vafspdg~-llaSgs~Dg~I~Vwd~~~~ 655 (707)
++..-+.+. .|++.+..|..+..++..+
T Consensus 198 ~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 198 SGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 665444444 7888888998888876643
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.51 E-value=1.1e+02 Score=30.77 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce--eee------eeccCCCeEEEEEe---CCCCEEEEEe-CCeE
Q 005235 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS--HRI------PFKLHGLPVSSVFH---PTRSIFFVST-KKNI 562 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~--~~~------~~~~~~~V~~v~fs---pd~~~l~v~s-dg~I 562 (707)
+.+..+......+.|+..+..|..-.+.++++..... ... .+.....|.++..- .+..+++.++ .|.+
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 121 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 121 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 4444444455566777777777222233344433211 101 23334456665442 3455666666 8999
Q ss_pred EEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---C---cceEEeec-CCCCEEE
Q 005235 563 RVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---S---KPYRVLKC-HPKDITN 628 (707)
Q Consensus 563 ~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---~---~~~~~l~~-h~~~I~~ 628 (707)
+...+.. +.....+..+ ..+-.+......+.|+..+..|.+..|....- . .-++.+.- -...|.+
T Consensus 122 Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~ 200 (307)
T 1zi0_A 122 KKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVS 200 (307)
T ss_dssp EEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEE
Confidence 9987642 2222234444 44545444445668888999999998887421 0 11111111 2345666
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235 629 VAFHRSYPLFASCSDDCTAYVFHGMVY 655 (707)
Q Consensus 629 vafspdg~llaSgs~Dg~I~Vwd~~~~ 655 (707)
+....++..+++.+..|.++-..+..|
T Consensus 201 ~~~~~~~~~ll~~T~~G~~Kr~~~~e~ 227 (307)
T 1zi0_A 201 LIVPRGDGAILTATQNGYGKRTAVAEY 227 (307)
T ss_dssp EECCCSSCEEEEEETTSEEEEECGGGS
T ss_pred EEEecCCCEEEEEEcCCceEEEEHHHh
Confidence 655555667888899999998876543
No 361
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.45 E-value=1.1e+02 Score=30.31 Aligned_cols=143 Identities=8% Similarity=0.030 Sum_probs=69.8
Q ss_pred cCCCCEEEEEeCC----CC----ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-------CeEEEE
Q 005235 503 HRRGDYLSTVMPA----GE----SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-------KNIRVY 565 (707)
Q Consensus 503 sp~g~~lat~s~d----g~----~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-------g~I~iw 565 (707)
..++..++.|+.. +. ...+.++|..+..-... ++.....-.+++.. ++.+++.|+ + ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 4567777777731 11 11377888877655311 12111111222222 455555554 3 358899
Q ss_pred ECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEECCCCCcceEEeecC---CCCEEEEEEcCC
Q 005235 566 DLLKQRLIKK--LETGLKEVSSIAIHPAGDNLIVGSR------EGKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRS 634 (707)
Q Consensus 566 Dl~~~~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~------Dg~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspd 634 (707)
|+.+.+-... +........++. .++..++.|+. -..+.+||+.+. + ...+... .....++.+ +
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~ 206 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG-D-WKDLAPMKTPRSMFGVAIH--K 206 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--T
T ss_pred eCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC-E-EEECCCCCCCcccceEEEE--C
Confidence 9988754322 111111112222 35677777764 235889998764 2 3333211 111122222 5
Q ss_pred CCEEEEEeCCC-----cEEEEec
Q 005235 635 YPLFASCSDDC-----TAYVFHG 652 (707)
Q Consensus 635 g~llaSgs~Dg-----~I~Vwd~ 652 (707)
+.+++.|+.++ .+.+||.
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEET
T ss_pred CEEEEEcCcCCCCccceEEEEEC
Confidence 67777776543 3556643
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=63.68 E-value=1.5e+02 Score=31.10 Aligned_cols=180 Identities=10% Similarity=0.069 Sum_probs=96.6
Q ss_pred cEEEEeCCCC--eEEEEEec-------CCcEEEEEEc---cC--C-CccEEEEE-eCCeEEEEECCCCCchhccccccee
Q 005235 399 TVRIWEVESG--RCLRVLEI-------GEAIQYVAWN---PL--P-ELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLL 462 (707)
Q Consensus 399 tVrIWd~~tg--~~l~~l~~-------~~~V~~v~~s---pd--g-~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~ 462 (707)
.|.+||+.|+ +.++++.. .+.+..+++. |. . +...+.+- ....|.|+|+.++...-..+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~---- 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP---- 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG----
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC----
Confidence 4789999999 99999887 3457888887 22 1 12333333 456899999888743211110
Q ss_pred eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC----CCEEEEEeCCCCccEEEEEECC-----CCcee-
Q 005235 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR----GDYLSTVMPAGESRAIFMHQLS-----KKLSH- 532 (707)
Q Consensus 463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~----g~~lat~s~dg~~~~V~Iwdl~-----~~~~~- 532 (707)
.+. .+ .-..+...+. ...-...|..|+++|+ ++.|......+ -.+|.+. .....
T Consensus 200 --~~~-----pd-~~~~~~i~G~----~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss----~~ly~V~T~~L~~~~~~~ 263 (381)
T 3q6k_A 200 --TFK-----AE-RPTKFDYGGK----EYEFKAGIFGITLGDRDSEGNRPAYYLAGSA----IKVYSVNTKELKQKGGKL 263 (381)
T ss_dssp --GGS-----CC-SCEEEEETTE----EEEECCCEEEEEECCCCTTSCCEEEEEESSC----SEEEEEEHHHHSSTTCCC
T ss_pred --CCc-----cc-cCcceEECCE----EeEeccCceEEEecCCcCCCCeEEEEEECCC----CcEEEEEHHHhhCcchhh
Confidence 000 00 0001111111 1112457889999997 67777666543 2333332 11111
Q ss_pred -eeeeccCC---CeEEEEEe-CCCCEEEEEe-CCeEEEEECCC-C---eEEEEEe--CCCCCeEEEEEcCCCCEEEEE
Q 005235 533 -RIPFKLHG---LPVSSVFH-PTRSIFFVST-KKNIRVYDLLK-Q---RLIKKLE--TGLKEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 533 -~~~~~~~~---~V~~v~fs-pd~~~l~v~s-dg~I~iwDl~~-~---~~~~~l~--~~~~~I~sl~~spdg~~L~sG 598 (707)
...++..+ ....+++. .+|.++++-- .+.|..|+..+ . .....+. ..-.++..+.+.++|.+.++.
T Consensus 264 ~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 264 NPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 02233333 33456675 4565555544 78999999876 1 1112221 233568888887777655544
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=63.54 E-value=1.3e+02 Score=30.55 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=99.6
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCCCcee---eeeeccCCCeEEEEEeCCCCE-EEEEeCCeEEEEEC---C------CC
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSH---RIPFKLHGLPVSSVFHPTRSI-FFVSTKKNIRVYDL---L------KQ 570 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~---~~~~~~~~~V~~v~fspd~~~-l~v~sdg~I~iwDl---~------~~ 570 (707)
++..++++.+.+| .|+--.+.....+ ...+.....+..+........ |+..+.|.+.-+.. . .|
T Consensus 3 ~~e~~~v~lT~~G---~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDG---YVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTC---EEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCC---EEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 4556777888877 6665443311100 022333444444444444444 44444777665543 2 13
Q ss_pred eEEE---EEeCCCCCeEE-EEEcC--CCCEEEEEECCCcEEEEECCCCC-----cceEE--eecCCCCEEEEEEcCCCCE
Q 005235 571 RLIK---KLETGLKEVSS-IAIHP--AGDNLIVGSREGKLCWFDMDLSS-----KPYRV--LKCHPKDITNVAFHRSYPL 637 (707)
Q Consensus 571 ~~~~---~l~~~~~~I~s-l~~sp--dg~~L~sGs~Dg~I~vwDl~~~~-----~~~~~--l~~h~~~I~~vafspdg~l 637 (707)
.++. .+... ..|.+ +.+.. ++.+|+..+..|.++-..+..-. .-+.. +.. ...+-.+........
T Consensus 80 ~~i~~~i~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 80 QHIANIIPIDRD-EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNE 157 (323)
T ss_dssp EEGGGTSCCCTT-CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSE
T ss_pred cChhhccCCCCC-CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCE
Confidence 3221 12222 23544 44433 26689999999999988874211 11221 222 245555555555567
Q ss_pred EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEE
Q 005235 638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLY 705 (707)
Q Consensus 638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlW 705 (707)
++..+.+|.+..|.......+......+..-.|... .. |.++...+++. .|++.+..|..+.-
T Consensus 158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~-d~----Vv~~~~~~~~~~~ll~vt~~G~gKr~ 221 (323)
T 1wp5_A 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG-DY----IVSGQLITSKDESIVVATQRGAVKKM 221 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT-CC----EEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC-CE----EEEEEEEcCCCcEEEEEECCCceEEE
Confidence 788889999988876532222222222222233222 12 66665544445 78888888876653
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=61.29 E-value=1.3e+02 Score=29.76 Aligned_cols=155 Identities=14% Similarity=0.050 Sum_probs=88.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCc-----eeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235 494 FKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKL-----SHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYD 566 (707)
Q Consensus 494 ~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~-----~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD 566 (707)
...|..+.... +..+++.++..| .++...+..-. .....+.....+..+........++..+ .|.+..+.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G---~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKG---YVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTS---EEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCC---EEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 34455443321 467899999988 77777664431 1102234445666665555555555555 78888887
Q ss_pred CCC---------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------CcceEEeecCCCCEEEEEE
Q 005235 567 LLK---------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS------SKPYRVLKCHPKDITNVAF 631 (707)
Q Consensus 567 l~~---------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~------~~~~~~l~~h~~~I~~vaf 631 (707)
... |.....|... ..|.++...+++..|+..+..|.++...+..- .+-+..+ ...+.+..+..
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~ 221 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIP 221 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEE
T ss_pred hhhCCCcCCCCCCEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEE
Confidence 532 2222233333 44656555556778999999999998876421 1122333 22344555544
Q ss_pred cCCCCEEEEEeCCCcEEE--Eecc
Q 005235 632 HRSYPLFASCSDDCTAYV--FHGM 653 (707)
Q Consensus 632 spdg~llaSgs~Dg~I~V--wd~~ 653 (707)
......++..+.+|.+.. ++..
T Consensus 222 ~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 222 IKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp ESSEEEEEEEETTSCEEEEEEEGG
T ss_pred eCCCCEEEEEcCCCeEEEeeeCHH
Confidence 333446667778888887 8654
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.22 E-value=1.7e+02 Score=30.53 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCCCEEEEEeCCCCccEEEEEECCC---------CceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE---CC--
Q 005235 504 RRGDYLSTVMPAGESRAIFMHQLSK---------KLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYD---LL-- 568 (707)
Q Consensus 504 p~g~~lat~s~dg~~~~V~Iwdl~~---------~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD---l~-- 568 (707)
++..++++.+.+| .|+--.++. +... ..++....+..+........|+..+ .|.++-+. +.
T Consensus 5 ~~e~~~v~lT~~G---yIKr~~l~~y~~~~r~g~g~~~-~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 5 APEDVVVTLSHAG---YAKRQPVSAYRAQRRGGRGRSA-ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCEEEEEESSC---EEEEEEHHHHHHTCCCCCCSEE-EECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cCCCEEEEEeCCC---EEEEeeHHHhhhhccCCCCcee-cccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 5667888888888 776554321 1111 2334455666665555555555444 67766554 32
Q ss_pred ----CCeEEE---EEeCCCCCeEEE-EEcC--CCCEEEEEECCCcEEEEECCCCC----cceE--EeecCCCCEEEEEEc
Q 005235 569 ----KQRLIK---KLETGLKEVSSI-AIHP--AGDNLIVGSREGKLCWFDMDLSS----KPYR--VLKCHPKDITNVAFH 632 (707)
Q Consensus 569 ----~~~~~~---~l~~~~~~I~sl-~~sp--dg~~L~sGs~Dg~I~vwDl~~~~----~~~~--~l~~h~~~I~~vafs 632 (707)
.|..+. .|... ..|.++ .+.. .+.+|+.++..|.++...+..-. .-+. .+.. ...+-.+...
T Consensus 81 ~r~a~G~~i~~ll~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESG-ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp CTTSCCEEGGGSCCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred CcccCCcCHhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 122221 12333 334444 4432 45699999999999988764321 1111 2222 3445555555
Q ss_pred CCCCEEEEEeCCCcEEEEecc
Q 005235 633 RSYPLFASCSDDCTAYVFHGM 653 (707)
Q Consensus 633 pdg~llaSgs~Dg~I~Vwd~~ 653 (707)
.....++..+..|.+..|...
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 555677788889988888765
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=57.70 E-value=1.7e+02 Score=30.00 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=58.0
Q ss_pred CeEEEEEeCC-CCEEEEEeCCeEEEEECCCCeEEEEEeC--CC---CCeEEEEEcCC-CCEEEEEEC-----------CC
Q 005235 541 LPVSSVFHPT-RSIFFVSTKKNIRVYDLLKQRLIKKLET--GL---KEVSSIAIHPA-GDNLIVGSR-----------EG 602 (707)
Q Consensus 541 ~V~~v~fspd-~~~l~v~sdg~I~iwDl~~~~~~~~l~~--~~---~~I~sl~~spd-g~~L~sGs~-----------Dg 602 (707)
.+.+++++|. ...|++++.+.|...+-. ++.-..+.. .. ..+.+++++|. ...|.+++. ++
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~ 311 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGG 311 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCS
T ss_pred ceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCC
Confidence 4889999986 357777776666665532 333333321 11 34678888873 344555532 33
Q ss_pred cEEEEECCCCCcceEEeec-CCC------C-EEEEEEcCCC-CEEEEEeCCCcEEEE
Q 005235 603 KLCWFDMDLSSKPYRVLKC-HPK------D-ITNVAFHRSY-PLFASCSDDCTAYVF 650 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~-h~~------~-I~~vafspdg-~llaSgs~Dg~I~Vw 650 (707)
...+|....+......+.. -.. . ..+++++|.. ..|+.++.++.|..-
T Consensus 312 ~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 312 KPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp SCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred ceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3455655443344444321 110 1 1357888753 345566666665543
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.94 E-value=2.1e+02 Score=29.75 Aligned_cols=164 Identities=12% Similarity=0.168 Sum_probs=90.3
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC------ceee--eeeccCCCeEEEEEeC---CCCEEEEEe-C
Q 005235 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK------LSHR--IPFKLHGLPVSSVFHP---TRSIFFVST-K 559 (707)
Q Consensus 492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~------~~~~--~~~~~~~~V~~v~fsp---d~~~l~v~s-d 559 (707)
.....+..+......+.|+..+..|.--.+.+|++... .... .++.....|.++.... ...+|+.++ .
T Consensus 43 ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 43 KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 34556666666666677777777772222333444322 1110 1223345666655432 345677777 8
Q ss_pred CeEEEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---C---cceEEeec-CCCC
Q 005235 560 KNIRVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---S---KPYRVLKC-HPKD 625 (707)
Q Consensus 560 g~I~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---~---~~~~~l~~-h~~~ 625 (707)
|.++...+.. +.....+... ..+-.+......+.|+..+..|.+..|....- + .=++.++- ....
T Consensus 123 G~vKrt~l~e~~~~~~~G~~ai~L~~~-d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~ 201 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRLARGKIAINLDEG-DALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEE 201 (370)
T ss_dssp SEEEEEEGGGGCSCCTTCEESSCCCTT-CCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCC
T ss_pred CeEEEeEHHHhhcccCCceEEEEeCCC-CEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCE
Confidence 9999888642 2222234333 34444444455678888999999988876421 0 01111111 1234
Q ss_pred EEEEEEcC-----------------------------------CCCEEEEEeCCCcEEEEeccccc
Q 005235 626 ITNVAFHR-----------------------------------SYPLFASCSDDCTAYVFHGMVYS 656 (707)
Q Consensus 626 I~~vafsp-----------------------------------dg~llaSgs~Dg~I~Vwd~~~~~ 656 (707)
|.++...+ .+..+++.+..|..+...+..|.
T Consensus 202 Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 202 VVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp EEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSC
T ss_pred EEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 55554443 34578899999999998776553
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.95 E-value=2.4e+02 Score=29.51 Aligned_cols=169 Identities=9% Similarity=0.088 Sum_probs=96.5
Q ss_pred EEEEEECCCC--ceeeeee-------ccCCCeEEEEEe---CC----CCEEEEEe--CCeEEEEECCCCeEEEEEe----
Q 005235 520 AIFMHQLSKK--LSHRIPF-------KLHGLPVSSVFH---PT----RSIFFVST--KKNIRVYDLLKQRLIKKLE---- 577 (707)
Q Consensus 520 ~V~Iwdl~~~--~~~~~~~-------~~~~~V~~v~fs---pd----~~~l~v~s--dg~I~iwDl~~~~~~~~l~---- 577 (707)
.|.+||+.+. +.. ..+ .....+..+++. |. +.+++++. ...|.|||+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li-~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEV-VRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEE-EEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeE-EEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 6777777777 554 333 123567788887 32 34555554 5889999999987665542
Q ss_pred CC--------------CCCeEEEEEcCC----CCEEEEEECCCcEEEEECC-----CC--CcceEEeecC--CCCEEEEE
Q 005235 578 TG--------------LKEVSSIAIHPA----GDNLIVGSREGKLCWFDMD-----LS--SKPYRVLKCH--PKDITNVA 630 (707)
Q Consensus 578 ~~--------------~~~I~sl~~spd----g~~L~sGs~Dg~I~vwDl~-----~~--~~~~~~l~~h--~~~I~~va 630 (707)
.. ...|..|+++|+ ++.|......+. .+|.+. .. ...++.+-.- ...-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 10 135788999998 778877766542 233322 11 1223333221 13344567
Q ss_pred Ec-CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235 631 FH-RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG 697 (707)
Q Consensus 631 fs-pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g 697 (707)
+. .+|.++++--....|..|+.... .+.. . -+..+.... .-..+.++.+.++|.+.++++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~-~~~~-~---n~~~l~~d~--~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKM-PLRM-K---NTDVVYTSS--RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSC-SBCG-G---GEEEEEECT--TCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCC-cccc-C---ceEEEEECC--CccccCeEEECCCCeEEEEEC
Confidence 75 67888888888999999965310 0000 0 122222111 122377788877776555443
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.47 E-value=45 Score=37.33 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCEEEEEeCC--------------eEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEE
Q 005235 542 PVSSVFHPTRSIFFVSTKK--------------NIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVG 598 (707)
Q Consensus 542 V~~v~fspd~~~l~v~sdg--------------~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sG 598 (707)
.--|+|+|.|.++ ++.|+ .+.+++..++++..-+.++. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~Lw-I~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLW-ILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEE-EEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEE-EEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999844 44432 46777777787776666543 459999999999888775
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.26 E-value=68 Score=38.17 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=31.7
Q ss_pred CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe
Q 005235 541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~ 577 (707)
.+.+++..++..++++-+ |+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 567788888888988877 9999999999999988754
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.48 E-value=84 Score=34.97 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCCCEEEEEeC-------------CeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEE
Q 005235 540 GLPVSSVFHPTRSIFFVSTK-------------KNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGS 599 (707)
Q Consensus 540 ~~V~~v~fspd~~~l~v~sd-------------g~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs 599 (707)
.....|+|.++|.+.++... +.|..++..++++...+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34668999999987664321 26777888778776666543 24689999999999888764
No 372
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=43.33 E-value=2.1e+02 Score=27.92 Aligned_cols=144 Identities=11% Similarity=0.032 Sum_probs=76.9
Q ss_pred EEEEe-CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------CCcce---EEeecC
Q 005235 554 FFVST-KKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL------SSKPY---RVLKCH 622 (707)
Q Consensus 554 l~v~s-dg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~------~~~~~---~~l~~h 622 (707)
+++.+ +|.|+--.+..-. ....+..+ ..+..+......+.|+..+..|+++.+.... .+.++ -.|. .
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~-~ 82 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP-P 82 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-T
T ss_pred EEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-C
Confidence 34444 6777665543211 00112333 3344443434455777778889988776532 11111 0122 1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeCCCc
Q 005235 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGADSV 701 (707)
Q Consensus 623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~Dg~ 701 (707)
...|.++....++..|+.++..|.++...+..+.....+.. .+..|... .. +..+... ..+..|+..+.+|.
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~--~~i~L~~~-d~----lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPEN-AH----VMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCE--ECBCCCTT-CC----BCCCEECCCTTCEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCce--EEEEECCC-CE----EEEEEEecCCCCEEEEEcCCCe
Confidence 34566664434566788899999999998765532222221 12233322 22 5555555 34567888888888
Q ss_pred EEEEe
Q 005235 702 IRLYC 706 (707)
Q Consensus 702 IrlWd 706 (707)
+..+.
T Consensus 156 ~lrf~ 160 (256)
T 1zvt_A 156 MLMFP 160 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 373
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=40.45 E-value=4.6e+02 Score=29.79 Aligned_cols=197 Identities=11% Similarity=-0.002 Sum_probs=97.8
Q ss_pred EEE-EcCCCCEEEEE-eCCCC-ccEEEEEECCCCceeeeeec--cCC------CeEEEEEeCCCCEEEEE-------e--
Q 005235 499 SVE-WHRRGDYLSTV-MPAGE-SRAIFMHQLSKKLSHRIPFK--LHG------LPVSSVFHPTRSIFFVS-------T-- 558 (707)
Q Consensus 499 ~v~-~sp~g~~lat~-s~dg~-~~~V~Iwdl~~~~~~~~~~~--~~~------~V~~v~fspd~~~l~v~-------s-- 558 (707)
.+. ++|++++++.+ |..|. -..|+++|+.+++...-.|. .++ ....++|..+..++++. +
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 78898876654 43332 35899999998866522232 011 11344776444333331 1
Q ss_pred --CCeEEEEECCCC--eEEEEEeCCCCC-eEEEEEcCCCCE-----EEEEEC---CCcEEEEECCCCCcceEEeecCCCC
Q 005235 559 --KKNIRVYDLLKQ--RLIKKLETGLKE-VSSIAIHPAGDN-----LIVGSR---EGKLCWFDMDLSSKPYRVLKCHPKD 625 (707)
Q Consensus 559 --dg~I~iwDl~~~--~~~~~l~~~~~~-I~sl~~spdg~~-----L~sGs~---Dg~I~vwDl~~~~~~~~~l~~h~~~ 625 (707)
...|+.|.+-+. +-...+.+.... -.+...++++.+ +++.+. ...+.+.|++.....+..+......
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 256899988764 222334443333 234556677662 444332 2446777765432333444322222
Q ss_pred EEEEEEcCCCCEEEEE----------eCCCcEEEEecccccCCC-CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235 626 ITNVAFHRSYPLFASC----------SDDCTAYVFHGMVYSDLN-QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694 (707)
Q Consensus 626 I~~vafspdg~llaSg----------s~Dg~I~Vwd~~~~~Dl~-~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~ 694 (707)
.+..+.++.+++.. ...+.|.+.++..+..-. .... ...+-.+.. ...+.++.|..+ .+++
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTS---LKILFTPTA--NEVFNFISTTKD-RVFL 364 (711)
T ss_dssp --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTT---CEEEECCCT--TEEEEEEEECSS-CEEE
T ss_pred --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccccccc---ceEEECCCC--CCeEEEEEEECC-EEEE
Confidence 23445566665532 245678888654321000 0011 222222211 112778888876 5667
Q ss_pred EEeCCCcEE
Q 005235 695 TAGADSVIR 703 (707)
Q Consensus 695 s~g~Dg~Ir 703 (707)
+...++.-+
T Consensus 365 ~~~~~~~~~ 373 (711)
T 4hvt_A 365 ATYDNVVAK 373 (711)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 777776543
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.57 E-value=4.1e+02 Score=30.47 Aligned_cols=158 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeC-------CCCCeEEEEEcC-CCCEEEEEECCCc----E
Q 005235 539 HGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLET-------GLKEVSSIAIHP-AGDNLIVGSREGK----L 604 (707)
Q Consensus 539 ~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-------~~~~I~sl~~sp-dg~~L~sGs~Dg~----I 604 (707)
.+.|.+++++|. ...+++++ .+.|...+ ..++.-..+.. ....|.+|+++| +...++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Q ss_pred EEEECCCCCcceEEeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235 605 CWFDMDLSSKPYRVLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675 (707)
Q Consensus 605 ~vwDl~~~~~~~~~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~ 675 (707)
.||--..+.+-...+..... .+..++++|..+-.+-++......+. ....+.....+..+.....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~------S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK------SSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE------ESSTTSSCEEETTSCCCCS
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE------ECCCCcccCCCccCccccC
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCC-CcEEE
Q 005235 676 SNGRGVMDCKFHP-RQPWLFTAGAD-SVIRL 704 (707)
Q Consensus 676 ~~~~gV~~l~fsp-dg~~L~s~g~D-g~Irl 704 (707)
.. .++..+.++| +...|+.+..+ +.|..
T Consensus 167 ~~-~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 167 NG-IGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp TT-TCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CC-CCeEEEEECCCCCCEEEEEEcCCCeEEE
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.55 E-value=2e+02 Score=34.03 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654 (707)
Q Consensus 624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~ 654 (707)
..+.+++.+++..++++-+.|+++|||++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t 266 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLST 266 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTT
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCC
Confidence 3577888888889999999999999997543
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.25 E-value=1.2e+02 Score=33.85 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=42.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---------CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe
Q 005235 496 MVSSVEWHRRGDYLSTVMPAG---------ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 496 ~V~~v~~sp~g~~lat~s~dg---------~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s 558 (707)
..-.|+|++.|+++++-..+. .+..+.+.+..++... .-+ .....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~-rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE-EEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE-EEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 346799999999666543321 1345666676666654 333 5567899999999999988864
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.67 E-value=5.7e+02 Score=28.92 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCC-------CCCeEEEEEcCCC-CEEEEEECC-------C
Q 005235 540 GLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETG-------LKEVSSIAIHPAG-DNLIVGSRE-------G 602 (707)
Q Consensus 540 ~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-------~~~I~sl~~spdg-~~L~sGs~D-------g 602 (707)
+.|..++|+|.. ..+++++ .+.|...+- .++.-..+..+ ...|.+|+++|.. +.|+++... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 489999999974 4566666 566666653 34333333322 1358999999843 444444321 1
Q ss_pred cEEEEECCCCCcceEEeec-CC--------CCEEEEEEcCCC-CEEEEEe
Q 005235 603 KLCWFDMDLSSKPYRVLKC-HP--------KDITNVAFHRSY-PLFASCS 642 (707)
Q Consensus 603 ~I~vwDl~~~~~~~~~l~~-h~--------~~I~~vafspdg-~llaSgs 642 (707)
...||--..+.+-...+.. .. ..+.+|+++|.. ..|..+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2344444333343433321 11 124679999864 3454454
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.71 E-value=5.4e+02 Score=26.10 Aligned_cols=108 Identities=6% Similarity=-0.045 Sum_probs=54.7
Q ss_pred CCCeEEEEEeC--CCCEEEEEeCC----eEEEEECCCCeEEEEEeC--------------CCCCeEEEEEcCC--CCEEE
Q 005235 539 HGLPVSSVFHP--TRSIFFVSTKK----NIRVYDLLKQRLIKKLET--------------GLKEVSSIAIHPA--GDNLI 596 (707)
Q Consensus 539 ~~~V~~v~fsp--d~~~l~v~sdg----~I~iwDl~~~~~~~~l~~--------------~~~~I~sl~~spd--g~~L~ 596 (707)
...|.+|++.| .+.+++.+..+ .|...+ ..++.-..+.. ....|.+|+++|. ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 45555544454 444432 22322222211 1124778999872 45666
Q ss_pred EEECCCcEEEEECCCCCcceEEeec-------------------CCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Q 005235 597 VGSREGKLCWFDMDLSSKPYRVLKC-------------------HPKDITNVAFHRS-YPLFASCSDDCTAYV 649 (707)
Q Consensus 597 sGs~Dg~I~vwDl~~~~~~~~~l~~-------------------h~~~I~~vafspd-g~llaSgs~Dg~I~V 649 (707)
+++..+.|...+ .+......+.. ....|.+|.++|. ...|..+..++.|..
T Consensus 133 ~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~ 203 (394)
T 3b7f_A 133 AGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFE 203 (394)
T ss_dssp EEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEE
T ss_pred EEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEE
Confidence 666666555443 22233333321 1235889999984 233333433443433
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.53 E-value=60 Score=39.47 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=30.8
Q ss_pred CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe
Q 005235 541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE 577 (707)
Q Consensus 541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~ 577 (707)
.+.+++..++..++++-+ |+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445566778888998888 9999999999999988764
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.13 E-value=2.3e+02 Score=31.45 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-C--------CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe
Q 005235 495 KMVSSVEWHRRGDYLSTVMPA-G--------ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST 558 (707)
Q Consensus 495 ~~V~~v~~sp~g~~lat~s~d-g--------~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s 558 (707)
.....|+|.++|.+.++.... + ....|..++..++... ..+ .....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~-~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE-EEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEE-EEEeCCCCccccCCEECCCCCEEEEEE
Confidence 446789999999877743321 0 1236667777666654 333 2346789999999999999875
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.56 E-value=57 Score=39.65 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 005235 386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI 416 (707)
Q Consensus 386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~ 416 (707)
.+..++++-+.|+++|||++.+|+|+.+...
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred CCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 4557899999999999999999999998776
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.08 E-value=85 Score=35.90 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=26.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 005235 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI 416 (707)
Q Consensus 388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~ 416 (707)
..++++-+.|+++|+|++.+++++.+...
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45889999999999999999999988876
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.95 E-value=1.3e+02 Score=34.41 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC
Q 005235 542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET 578 (707)
Q Consensus 542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~ 578 (707)
|.++.+ +..++++-+ |.++|+||+.+++++.+..-
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444444 356777777 99999999999999887764
No 384
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.17 E-value=9.5e+02 Score=26.98 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-cc-------CCCeEEEEEeCC-CCEEEEEe-CC---
Q 005235 495 KMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL-------HGLPVSSVFHPT-RSIFFVST-KK--- 560 (707)
Q Consensus 495 ~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~-------~~~V~~v~fspd-~~~l~v~s-dg--- 560 (707)
+.|..|+++|.. ..+.++...+ .|...+-. +..- ..+ .. ...|.+++++|. ...++++. ..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~g---gv~rS~D~-G~tW-~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~ 97 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIG---GAYRWDPS-TETW-IPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTND 97 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSS---CEEEEETT-TTEE-EECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSS
T ss_pred ceeeEEEECCCCCCEEEEEecCC---cEEEeCCC-CCCE-EECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccc
Confidence 389999999864 4455555444 45444432 2222 233 21 245889999984 34455544 21
Q ss_pred ----eEEEEECC-CCeEEEEEeCC---------CCCeEEEEEcCCC-CEEEEEECC
Q 005235 561 ----NIRVYDLL-KQRLIKKLETG---------LKEVSSIAIHPAG-DNLIVGSRE 601 (707)
Q Consensus 561 ----~I~iwDl~-~~~~~~~l~~~---------~~~I~sl~~spdg-~~L~sGs~D 601 (707)
...||-.. .++.-..+... ...+.+|+++|.. +.|+++...
T Consensus 98 ~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 98 WLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 24455433 33322222211 1124689999864 566666533
Done!