Your job contains 1 sequence.
>005237
MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSA
TTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSSTTDTTGVAATNASSNPPSVDITNTEKC
GGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLG
FETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKP
QIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGQ
QELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEM
GNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKIS
AYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGP
PSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLE
NDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSY
SGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTF
SNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005237
(706 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126901 - symbol:HAM3 "AT4G00150" species:3702... 1078 2.8e-127 3
TAIR|locus:2055622 - symbol:HAM1 "AT2G45160" species:3702... 944 1.0e-107 2
TAIR|locus:2101801 - symbol:HAM2 "AT3G60630" species:3702... 957 4.0e-106 2
TAIR|locus:2115340 - symbol:HAM4 "AT4G36710" species:3702... 513 3.2e-49 1
UNIPROTKB|Q6DLS1 - symbol:SCL1 "SCARECROW-like protein" s... 493 4.2e-47 1
TAIR|locus:2174974 - symbol:AT5G66770 "AT5G66770" species... 349 3.6e-29 1
TAIR|locus:2006747 - symbol:GAI "GIBBERELLIC ACID INSENSI... 337 5.2e-28 1
TAIR|locus:2201557 - symbol:RGL1 "RGA-like 1" species:370... 332 1.5e-27 1
TAIR|locus:2005516 - symbol:RGA1 "REPRESSOR OF GA1-3 1" s... 327 1.2e-26 1
TAIR|locus:2157477 - symbol:RGL3 "RGA-like protein 3" spe... 323 2.0e-26 1
TAIR|locus:2080345 - symbol:SCR "SCARECROW" species:3702 ... 318 5.4e-26 2
TAIR|locus:2101694 - symbol:AT3G50650 "AT3G50650" species... 315 2.0e-25 1
TAIR|locus:2099624 - symbol:RGL2 "RGA-like 2" species:370... 307 8.2e-25 2
TAIR|locus:2132482 - symbol:AT4G08250 "AT4G08250" species... 295 2.2e-23 1
TAIR|locus:2164783 - symbol:PAT1 "AT5G48150" species:3702... 290 8.8e-23 1
TAIR|locus:2044973 - symbol:SCL21 "AT2G04890" species:370... 283 1.5e-22 1
TAIR|locus:2165685 - symbol:AT5G41920 "AT5G41920" species... 281 2.1e-22 1
TAIR|locus:2008086 - symbol:SCL3 "AT1G50420" species:3702... 183 3.2e-22 2
TAIR|locus:2008076 - symbol:SCL5 "AT1G50600" species:3702... 281 1.9e-21 1
UNIPROTKB|Q84MM9 - symbol:MOC1 "Protein MONOCULM 1" speci... 202 4.0e-19 2
TAIR|locus:2020487 - symbol:LAS "AT1G55580" species:3702 ... 249 2.7e-18 1
TAIR|locus:2015243 - symbol:AT1G63100 "AT1G63100" species... 252 3.8e-18 1
TAIR|locus:2026982 - symbol:SCL1 "AT1G21450" species:3702... 233 9.2e-18 2
TAIR|locus:2075155 - symbol:AT3G46600 species:3702 "Arabi... 226 2.1e-15 1
TAIR|locus:2148293 - symbol:AT5G59450 species:3702 "Arabi... 226 2.3e-15 1
TAIR|locus:2025022 - symbol:SCL14 "SCARECROW-like 14" spe... 181 2.8e-10 1
TAIR|locus:2184625 - symbol:SCL8 "AT5G52510" species:3702... 111 1.6e-08 2
TAIR|locus:2120106 - symbol:SHR "AT4G37650" species:3702 ... 147 2.5e-08 2
TAIR|locus:2025032 - symbol:AT1G07520 "AT1G07520" species... 160 4.7e-08 1
TAIR|locus:2083073 - symbol:AT3G49950 "AT3G49950" species... 110 6.0e-05 2
TAIR|locus:2040701 - symbol:AT2G37650 species:3702 "Arabi... 123 0.00051 1
>TAIR|locus:2126901 [details] [associations]
symbol:HAM3 "AT4G00150" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010492 "maintenance of shoot apical meristem identity"
evidence=IGI] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0048768 "root hair cell tip growth" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP] Pfam:PF03514 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0051301 GO:GO:0007623 GO:GO:0003700
GO:GO:0006351 GO:GO:0048768 GO:GO:0010492 EMBL:AL161471
EMBL:AF069299 InterPro:IPR005202 PROSITE:PS50985
HOGENOM:HOG000239326 eggNOG:NOG320780 EMBL:AF462831 EMBL:AY133537
EMBL:AF036303 EMBL:EU550755 EMBL:EU550756 EMBL:EU550757
EMBL:EU550758 EMBL:EU550759 EMBL:EU550760 EMBL:EU550761
EMBL:EU550762 EMBL:EU550763 EMBL:EU550764 EMBL:EU550765
EMBL:EU550766 EMBL:EU550767 EMBL:EU550768 EMBL:EU550769
EMBL:EU550770 EMBL:EU550771 EMBL:EU550772 EMBL:EU550773
EMBL:EU550774 EMBL:EU550775 EMBL:EU550776 EMBL:EU550777
IPI:IPI00542979 PIR:T01343 PIR:T51237 RefSeq:NP_191926.1
UniGene:At.3732 UniGene:At.67226 IntAct:O81316
EnsemblPlants:AT4G00150.1 GeneID:828208 KEGG:ath:AT4G00150
GeneFarm:4228 TAIR:At4g00150 InParanoid:O81316 OMA:KTPPWRA
PhylomeDB:O81316 ProtClustDB:CLSN2916162 Genevestigator:O81316
Uniprot:O81316
Length = 558
Score = 1078 (384.5 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
Identities = 219/363 (60%), Positives = 265/363 (73%)
Query: 347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLS-PVVKPFQRAAFYVKEALQLLLHMNMNT 405
+ +Q+ KAAE+IE + LAQGILARLN QLS PV KP +RAAFY KEAL LLH N+
Sbjct: 205 ITEQLVKAAEVIE-SDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLH-NV-- 260
Query: 406 PSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQ 465
S ++ Y++IFKI+AYKSFSEISP+LQFANFT NQALLE+F G +R+HIIDFDIGYGGQ
Sbjct: 261 -SQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQ 319
Query: 466 WASLMQELVFRSEGPP-SLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXX 524
WASLMQELV R P SLKIT F S + HD+ ELGFTQ+NLKHFASEINI
Sbjct: 320 WASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSL 379
Query: 525 XXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDR 584
SWP E + AVN+ FS+ PLVLRFVK L P I+V DR C+R
Sbjct: 380 DLLGSISWP---NSSEKEAVAVNISAASFSH----LPLVLRFVKHLSPTIIVCSDRGCER 432
Query: 585 PDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPER-L 643
D PF+ + H+L S++ L ESLD+VN NLDA+QKIERFL+ P IEK+VL R R ER +
Sbjct: 433 TDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPM 492
Query: 644 PPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATA 703
W+++F+Q GF+P+T SNF ESQA+CLVQRTPVRGFHVEK+ +SL+LCWQR EL+ +A
Sbjct: 493 MTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSA 552
Query: 704 WRC 706
WRC
Sbjct: 553 WRC 555
Score = 151 (58.2 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
Identities = 42/104 (40%), Positives = 59/104 (56%)
Query: 113 DITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILH-----QDTEF 167
D T E+CG +G+ DWE + + EQSIL LIMGD+ DPSL LN IL D+++
Sbjct: 83 DATTDEQCGAIGLGDWEEQVPH--DHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDY 140
Query: 168 NA-GFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQN 210
++ GFGVVD GF SV + ++N ++ + TQN
Sbjct: 141 SSPGFGVVDT---GFGLDHHSVPPSHVSGLLINQSQ--THYTQN 179
Score = 84 (34.6 bits), Expect = 3.1e-120, Sum P(3) = 3.1e-120
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 247 LIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGP 289
L++NQ+Q Y QNPA Y H +PPP KRLN GP
Sbjct: 167 LLINQSQTHYTQNPAAIF---YG----HHHHTPPPAKRLNPGP 202
Score = 56 (24.8 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 4 MPLAFEDFQGKG 15
MPL FE+FQGKG
Sbjct: 1 MPLPFEEFQGKG 12
>TAIR|locus:2055622 [details] [associations]
symbol:HAM1 "AT2G45160" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0048768 "root hair cell tip growth" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] Pfam:PF03514
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0051301
GO:GO:0003700 GO:GO:0006351 GO:GO:0048768 GO:GO:0010492
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000239326
ProtClustDB:CLSN2683334 EMBL:BT004053 EMBL:BT020591 IPI:IPI00534274
PIR:B84887 RefSeq:NP_182041.1 UniGene:At.27046 UniGene:At.67081
UniGene:At.74179 STRING:Q7XJM8 PaxDb:Q7XJM8 PRIDE:Q7XJM8
EnsemblPlants:AT2G45160.1 GeneID:819124 KEGG:ath:AT2G45160
GeneFarm:4226 TAIR:At2g45160 eggNOG:NOG320780 InParanoid:Q7XJM8
OMA:HRWIERS PhylomeDB:Q7XJM8 Genevestigator:Q7XJM8 Uniprot:Q7XJM8
Length = 640
Score = 944 (337.4 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
Identities = 208/383 (54%), Positives = 257/383 (67%)
Query: 344 QQAVIDQIFKAAELI-EMGN-----PVLAQGILARLNHQL---SPVVKPFQRAAFYVKEA 394
Q +I+Q+F AAELI GN VLAQGILARLNH L S PFQRAA ++ EA
Sbjct: 265 QSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARLNHHLNTSSNHKSPFQRAASHIAEA 324
Query: 395 LQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFE--GCNR 452
L L+H N ++P ++ N+I +I+AY+SFSE SP LQF NFT NQ++LE+ G +R
Sbjct: 325 LLSLIH-NESSPPL-ITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNESGFDR 382
Query: 453 IHIIDFDIGYGGQWASLMQELVF-----RSEGPPSLKITAFTS--SSTHDEFELGFTQEN 505
IHIIDFD+GYGGQW+SLMQEL R SLK+T F S+ DEFEL FT+EN
Sbjct: 383 IHIIDFDVGYGGQWSSLMQELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEEN 442
Query: 506 LKHFASEINIPFXXXXXXXXXXXX-ASWPLPLQGLENDVTAVNLPIG-VFSNYPATFPLV 563
LK FA E+ IPF A WPL L+ E + AVNLP+ V S Y PL+
Sbjct: 443 LKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPVNSVASGY---LPLI 499
Query: 564 LRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERF 623
LRF+KQL P IVV DR CDR D PF + ++H+LQ ++ LLESLD+ N N D IERF
Sbjct: 500 LRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDA-NQNQDD-SSIERF 557
Query: 624 LVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVE 683
V P IEK+++ RHR ER PPWR LF Q GF+P + S AE+QA+CL+QR PVRGFHVE
Sbjct: 558 WVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVE 617
Query: 684 KRQSSLVLCWQRKELISATAWRC 706
KRQSSLV+CWQRKEL++ +AW+C
Sbjct: 618 KRQSSLVMCWQRKELVTVSAWKC 640
Score = 141 (54.7 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 4 MPLAFEDFQGKGALXXXXXXXXXXXXXXXXXKEEQDWLLSNSNRGN-KKANCCYV-GSAT 61
MPL+FE FQG+G ++ W SN ++ K+ + YV G
Sbjct: 1 MPLSFERFQGEGVFGLSSSSFYSDS--------QKIW--SNQDKTEAKQEDLGYVVGGFL 50
Query: 62 TEPTSVLDNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXVAATNASSNPPSVDITNTEKCG 121
EPTSVLD R V T ++ D N KC
Sbjct: 51 PEPTSVLDALRSPSPLASYSSTTTTLSSSHGGGGTT--VTNTTVTAG----DDNNNNKCS 104
Query: 122 GLGMEDWESVLSGS-PNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVV-----D 175
+G++D + VLS S P QEQSILRLIM DP + F +G G V D
Sbjct: 105 QMGLDDLDGVLSASSPGQEQSILRLIM----DPGSAFG-VFDPGFGFGSGSGPVSAPVSD 159
Query: 176 QASLGFETPFTSVSS 190
++L PF +++
Sbjct: 160 NSNLLCNFPFQEITN 174
>TAIR|locus:2101801 [details] [associations]
symbol:HAM2 "AT3G60630" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0048768 "root hair cell tip growth" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0007020 "microtubule
nucleation" evidence=RCA] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0051301 GO:GO:0003700 GO:GO:0006351
GO:GO:0048768 GO:GO:0010492 EMBL:AL162295 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY064062 EMBL:AY096372 EMBL:EU550731
EMBL:EU550732 EMBL:EU550733 EMBL:EU550734 EMBL:EU550735
EMBL:EU550736 EMBL:EU550737 EMBL:EU550738 EMBL:EU550739
EMBL:EU550740 EMBL:EU550741 EMBL:EU550742 EMBL:EU550743
EMBL:EU550744 EMBL:EU550745 EMBL:EU550746 EMBL:EU550747
EMBL:EU550748 EMBL:EU550749 EMBL:EU550750 EMBL:EU550752
EMBL:EU550754 EMBL:EU550751 EMBL:EU550753 IPI:IPI00520916
PIR:T47874 RefSeq:NP_191622.1 UniGene:At.27084 IntAct:Q9M000
EnsemblPlants:AT3G60630.1 GeneID:825234 KEGG:ath:AT3G60630
GeneFarm:4227 TAIR:At3g60630 eggNOG:NOG261649 HOGENOM:HOG000239326
InParanoid:Q9M000 OMA:ANQTILE PhylomeDB:Q9M000
ProtClustDB:CLSN2683334 Genevestigator:Q9M000 Uniprot:Q9M000
Length = 623
Score = 957 (341.9 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 212/402 (52%), Positives = 265/402 (65%)
Query: 329 TKQKMVNDELANQQLQQAVIDQIFKAA-ELIEMG---NPVLAQGILARLNHQLSP----- 379
T K+ ++ +Q +IDQ+F AA EL G NPVLAQGILARLNH L+
Sbjct: 225 TPPKIAGEDQNDQDQSAVIIDQLFSAAAELTTNGGDNNPVLAQGILARLNHNLNNNNDDT 284
Query: 380 ---VVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFAN 436
PF RAA Y+ EAL LL + +P + N+IF+I+AY++FSE SP LQF N
Sbjct: 285 NNNPKPPFHRAASYITEALHSLLQDSSLSPPSLSPPQNLIFRIAAYRAFSETSPFLQFVN 344
Query: 437 FTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVF---RSEGPPSLKITAFTSSST 493
FT NQ +LE+FEG +RIHI+DFDIGYGGQWASL+QEL RS PSLKITAF S ST
Sbjct: 345 FTANQTILESFEGFDRIHIVDFDIGYGGQWASLIQELAGKRNRSSSAPSLKITAFASPST 404
Query: 494 -HDEFELGFTQENLKHFASEINIPFXXXXXXXXXXXXAS-WPLPL-QGLENDVTAVNLPI 550
DEFEL FT+ENL+ FA E + F + WPL L + E + AVNLPI
Sbjct: 405 VSDEFELRFTEENLRSFAGETGVSFEIELLNMEILLNPTYWPLSLFRSSEKEAIAVNLPI 464
Query: 551 G-VFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRP-DFPFAHHMVHALQSYSGLLESLD 608
+ S Y PL+LRF+KQ+ P +VV DRSCDR D PF + +++ALQ Y+ LLESLD
Sbjct: 465 SSMVSGY---LPLILRFLKQISPNVVVCSDRSCDRNNDAPFPNGVINALQYYTSLLESLD 521
Query: 609 SVNVN-LDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQ 667
S N+N +A IERF V P I+K++ R+R ER PPWRSLF Q GF P+T S AE+Q
Sbjct: 522 SGNLNNAEAATSIERFCVQPSIQKLLTNRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQ 581
Query: 668 ADCLVQRTPVRGFHVEKRQSS---LVLCWQRKELISATAWRC 706
A+ L+QR P+RGFH+EKRQSS LVLCWQRKEL++ +AW+C
Sbjct: 582 AEYLLQRNPMRGFHLEKRQSSSPSLVLCWQRKELVTVSAWKC 623
Score = 113 (44.8 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 39/118 (33%), Positives = 49/118 (41%)
Query: 40 WLLSNSNRGNKKANCCYV--GSATTEPTSVLDNRRXXXXXXXXXXXXXXXXXXXXXXXXX 97
W G + + C+V +EPTSVLD+ R
Sbjct: 28 WANPEKLHGRVEEDLCFVVNNGGFSEPTSVLDSVRSPSPFVSSSTTTLSSSHGGPSGGGA 87
Query: 98 XXVAATNASSNPPSVDITNTEKCGGLGMEDWESVLSG-SPNQEQSILRLIM-GDTDDP 153
AAT + ++ KC +G ED + VLSG SP QEQSI RLIM GD DP
Sbjct: 88 A--AATFSGADG---------KCDQMGFEDLDGVLSGGSPGQEQSIFRLIMAGDVVDP 134
Score = 72 (30.4 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 23/71 (32%), Positives = 28/71 (39%)
Query: 4 MPLAFEDFQGKGALXXXXXXXXXXXXXXXXXKEEQDWLLSNSNRGNKKANCCYV--GSAT 61
MPL FE FQGKG L W G + + C+V
Sbjct: 1 MPLPFEQFQGKGVLGFLDSSSSPGYKI---------WANPEKLHGRVEEDLCFVVNNGGF 51
Query: 62 TEPTSVLDNRR 72
+EPTSVLD+ R
Sbjct: 52 SEPTSVLDSVR 62
>TAIR|locus:2115340 [details] [associations]
symbol:HAM4 "AT4G36710" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0048831 "regulation of shoot system development" evidence=IGI]
Pfam:PF03514 GO:GO:0005634 GO:GO:0030154 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0048831
EMBL:AL161589 EMBL:Z99708 InterPro:IPR005202 PROSITE:PS50985
EMBL:AK118497 IPI:IPI00538111 PIR:E85433 RefSeq:NP_195389.4
UniGene:At.31304 PaxDb:O23210 PRIDE:O23210 DNASU:829824
EnsemblPlants:AT4G36710.1 GeneID:829824 KEGG:ath:AT4G36710
GeneFarm:4264 TAIR:At4g36710 eggNOG:NOG271584 HOGENOM:HOG000090733
InParanoid:O23210 OMA:ELVLCWH ProtClustDB:CLSN2717261
Genevestigator:O23210 Uniprot:O23210
Length = 486
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 130/369 (35%), Positives = 197/369 (53%)
Query: 348 IDQIFKAAELIEMGNPVLAQGILARLNHQL-SPVVKPFQRAAFYVKEALQLLLHMNMNTP 406
I+ + + + +E LAQ +L+RLN +L SP +P QRAAFY KEAL L + P
Sbjct: 123 IEDLIRVVDCVESDELQLAQVVLSRLNQRLRSPAGRPLQRAAFYFKEALGSFLTGSNRNP 182
Query: 407 SAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNR---IHIIDFDIGYG 463
S I+ +I A K +S ISPI F++FT NQA+L++ + +H++DF+IG+G
Sbjct: 183 IRLSSWSEIVQRIRAIKEYSGISPIPLFSHFTANQAILDSLSSQSSSPFVHVVDFEIGFG 242
Query: 464 GQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXX 523
GQ+ASLM+E+ +S L++TA + E L +ENL FA+E+ I F
Sbjct: 243 GQYASLMREITEKSVSGGFLRVTAVVAEECAVETRL--VKENLTQFAAEMKIRFQIEFVL 300
Query: 524 XXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCD 583
S+ ++ +E + T V + +F V ++++ PK+VV +D
Sbjct: 301 MKTFEMLSFKA-IRFVEGERTVVLISPAIFRRLSGITDFVNN-LRRVSPKVVVFVDSEGW 358
Query: 584 RP---DFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI-ERFLVYPCIEKIV---LGR 636
F V AL+ Y+ +LESLD+ D ++KI E F++ P I V R
Sbjct: 359 TEIAGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADR 418
Query: 637 HRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRK 696
+ E WR F +G P+ S FA+ QA+CL+++ VRGFHV KRQ LVLCW +
Sbjct: 419 RHTGEMT--WREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGR 476
Query: 697 ELISATAWR 705
L++ +AWR
Sbjct: 477 ALVATSAWR 485
>UNIPROTKB|Q6DLS1 [details] [associations]
symbol:SCL1 "SCARECROW-like protein" species:3708 "Brassica
napus" [GO:0005515 "protein binding" evidence=IPI] Pfam:PF03514
GO:GO:0006355 GO:GO:0006351 InterPro:IPR005202 PROSITE:PS50985
EMBL:AY664405 IntAct:Q6DLS1 Uniprot:Q6DLS1
Length = 461
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 129/369 (34%), Positives = 195/369 (52%)
Query: 348 IDQIFKAAELIEMGNPVLAQGILARLNHQLSPVV-KPFQRAAFYVKEAL-QLLLHMNMNT 405
I+ + + + IE LA +L++LN +L +P QRAAFY KEAL LL N N
Sbjct: 100 IEDLIRVVDCIESDELHLAHVVLSQLNQRLQTSAGRPLQRAAFYFKEALGSLLTGTNRNQ 159
Query: 406 PSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNR---IHIIDFDIGY 462
S +I+ KI A K FS ISPI F++FT NQA+L++ + +H++DF+IG+
Sbjct: 160 ---LFSWSDIVQKIRAIKEFSGISPIPLFSHFTANQAILDSLSSQSSSPFVHVVDFEIGF 216
Query: 463 GGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXX 522
GGQ+ASLM+E+ +S L++TA + E L +ENL FA+E+ I F
Sbjct: 217 GGQYASLMREIAEKSANGGFLRVTAVVAEDCAVETRL--VKENLTQFAAEMKIRFQIEFV 274
Query: 523 XXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLD-RS 581
S+ ++ ++ + T V + +F V + ++ P +VV +D
Sbjct: 275 LMKTFEILSFKA-IRFVDGERTVVLISPAIFRRVIGIAEFVNN-LGRVSPNVVVFVDSEG 332
Query: 582 CDRP--DFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI-ERFLVYPCIEKIV--LGR 636
C F V A + Y+ +LESLD+ D ++KI E FL+ P I V
Sbjct: 333 CTETAGSGSFRREFVSAFEFYTMVLESLDAAAPPGDLVKKIVETFLLRPKISAAVETAAN 392
Query: 637 HRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRK 696
RS ++ WR + +G P+ S FA+ QA+CL+++ VRGFHV KRQ LVLCW +
Sbjct: 393 RRSAGQMT-WREMLCAAGMRPVQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGR 451
Query: 697 ELISATAWR 705
L++ +AWR
Sbjct: 452 ALVATSAWR 460
>TAIR|locus:2174974 [details] [associations]
symbol:AT5G66770 "AT5G66770" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 EMBL:AB010700
InterPro:IPR005202 PROSITE:PS50985 EMBL:AY062538 EMBL:BT002580
IPI:IPI00537848 RefSeq:NP_201478.1 UniGene:At.27307
ProteinModelPortal:Q9FL03 IntAct:Q9FL03 PRIDE:Q9FL03
EnsemblPlants:AT5G66770.1 GeneID:836810 KEGG:ath:AT5G66770
GeneFarm:4249 TAIR:At5g66770 eggNOG:NOG324692 HOGENOM:HOG000240374
InParanoid:Q9FL03 OMA:DASCSAP PhylomeDB:Q9FL03
ProtClustDB:CLSN2684429 Genevestigator:Q9FL03 Uniprot:Q9FL03
Length = 584
Score = 349 (127.9 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 109/380 (28%), Positives = 182/380 (47%)
Query: 343 LQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMN 402
L+ ++ I+ A + + +P A L ++ +S + P +R AFY EAL L +
Sbjct: 213 LEPPLLKAIYDCARISD-SDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRL--S 269
Query: 403 MNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGY 462
N+P+ + S + I +YK+ ++ P +FA+ T NQA+LEA E N+IHI+DF I
Sbjct: 270 PNSPATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQ 329
Query: 463 GGQWASLMQELVFRSEGPPS-LKITAFTSSSTHDEFE--LGFTQENLKHFAS--EINIPF 517
G QW +L+Q L R+ G P+ ++++ + S + E L T L+ FA ++N F
Sbjct: 330 GIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDF 389
Query: 518 XXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFS---NYPATFPLVLRFVKQLQPKI 574
+S+ + ++V AVN + ++ P LR K L P++
Sbjct: 390 IPILTPIHLLNGSSFRVD----PDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRV 445
Query: 575 VVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI--ERFLVYPCIEKI 632
V + FA+ + +ALQ YS + ESL+ N+ D+ +++ ER L I +
Sbjct: 446 VTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEP-NLGRDSEERVRVERELFGRRISGL 504
Query: 633 V----LGRHRSP-ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFH--VEKR 685
+ G HR E WR L +GF + SN+A SQA L+ + VE +
Sbjct: 505 IGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESK 564
Query: 686 QSSLVLCWQRKELISATAWR 705
+ L W L++ ++WR
Sbjct: 565 PGFISLAWNDLPLLTLSSWR 584
>TAIR|locus:2006747 [details] [associations]
symbol:GAI "GIBBERELLIC ACID INSENSITIVE" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA;TAS] [GO:0009938 "negative regulation of gibberellic
acid mediated signaling pathway" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010233 "phloem transport"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IGI]
[GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA]
[GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
[GO:2000033 "regulation of seed dormancy process" evidence=IGI]
[GO:0009739 "response to gibberellin stimulus" evidence=IEP]
[GO:0010187 "negative regulation of seed germination" evidence=IGI]
[GO:0010218 "response to far red light" evidence=IEP] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=IGI] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] [GO:0006808 "regulation of nitrogen utilization"
evidence=IMP] Pfam:PF03514 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634 GO:GO:0009723
GO:GO:0003700 GO:GO:0006351 GO:GO:0010218 GO:GO:0010187
GO:GO:0006808 GO:GO:0042538 GO:GO:2000377 EMBL:AC006917
GO:GO:0010233 GO:GO:0040029 GO:GO:0009867 GO:GO:0009863
GO:GO:0009740 EMBL:Y11337 EMBL:Y15193 EMBL:AY058194 EMBL:AY142002
IPI:IPI00535232 PIR:H86282 RefSeq:NP_172945.1 UniGene:At.15032
UniGene:At.75604 PDB:2ZSH PDB:2ZSI PDBsum:2ZSH PDBsum:2ZSI
ProteinModelPortal:Q9LQT8 SMR:Q9LQT8 DIP:DIP-32985N IntAct:Q9LQT8
STRING:Q9LQT8 EnsemblPlants:AT1G14920.1 GeneID:838057
KEGG:ath:AT1G14920 GeneFarm:4235 TAIR:At1g14920 eggNOG:NOG243696
HOGENOM:HOG000238577 InParanoid:Q9LQT8 KO:K14494 OMA:RRVYRFR
PhylomeDB:Q9LQT8 ProtClustDB:CLSN2682993 EvolutionaryTrace:Q9LQT8
Genevestigator:Q9LQT8 GermOnline:AT1G14920 GO:GO:0009938
GO:GO:2000033 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 Uniprot:Q9LQT8
Length = 533
Score = 337 (123.7 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 110/394 (27%), Positives = 177/394 (44%)
Query: 325 TATATKQKMVNDELANQQLQQA-VIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKP 383
T TAT + + L + Q ++ + AE ++ N +A+ ++ ++ +
Sbjct: 146 TTTATAESTRHVVLVDSQENGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGA 205
Query: 384 FQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQAL 443
++ A Y EAL ++ +PS + +++ + + F E P L+FA+FT NQA+
Sbjct: 206 MRKVATYFAEALARRIYRL--SPSQSPIDHSLSDTLQMH--FYETCPYLKFAHFTANQAI 261
Query: 444 LEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFE-LGFT 502
LEAF+G R+H+IDF + G QW +LMQ L R GPP ++T + D F+ L
Sbjct: 262 LEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAP-DNFDYLHEV 320
Query: 503 QENLKHFASEINIPFXXXXXXXXXXXX--ASWPLPLQGLENDVTAVN--LPIGVFSNYPA 558
L H A I++ F AS L L+ E + AVN + P
Sbjct: 321 GCKLAHLAEAIHVEFEYRGFVANTLADLDASM-LELRPSEIESVAVNSVFELHKLLGRPG 379
Query: 559 TFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQ 618
VL V Q++P+I +++ + F +L YS L +SL+ V D +
Sbjct: 380 AIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQDKVM 439
Query: 619 KIERFL------VYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLV 672
E +L V C + RH E L WR+ F +GFA + A QA L+
Sbjct: 440 S-EVYLGKQICNVVACDGPDRVERH---ETLSQWRNRFGSAGFAAAHIGSNAFKQASMLL 495
Query: 673 QR-TPVRGFHVEKRQSSLVLCWQRKELISATAWR 705
G+ VE+ L+L W + LI+ +AW+
Sbjct: 496 ALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWK 529
>TAIR|locus:2201557 [details] [associations]
symbol:RGL1 "RGA-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;TAS] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA;TAS] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IGI] [GO:0009723
"response to ethylene stimulus" evidence=IGI;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IGI;RCA] [GO:0042538
"hyperosmotic salinity response" evidence=IGI;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=IGI] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009737 GO:GO:0005634 GO:GO:0030154 GO:GO:0009723
GO:GO:0003700 GO:GO:0006351 GO:GO:0009908 GO:GO:0042538
GO:GO:2000377 EMBL:AC020665 GO:GO:0040029 GO:GO:0009867
GO:GO:0009863 GO:GO:0009740 HOGENOM:HOG000238577 KO:K14494
GO:GO:0009938 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 EMBL:AJ224957 EMBL:AY048749 EMBL:AY070035
EMBL:AY096506 IPI:IPI00518407 PIR:G96688 RefSeq:NP_176809.1
UniGene:At.26400 UniGene:At.75607 ProteinModelPortal:Q9C8Y3
SMR:Q9C8Y3 IntAct:Q9C8Y3 STRING:Q9C8Y3 EnsemblPlants:AT1G66350.1
GeneID:842953 KEGG:ath:AT1G66350 GeneFarm:4239 TAIR:At1g66350
eggNOG:NOG314007 InParanoid:Q9C8Y3 OMA:TSAWRIN PhylomeDB:Q9C8Y3
ProtClustDB:CLSN2914366 Genevestigator:Q9C8Y3 GermOnline:AT1G66350
Uniprot:Q9C8Y3
Length = 511
Score = 332 (121.9 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 103/377 (27%), Positives = 169/377 (44%)
Query: 338 LANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQL 397
L +Q+ ++ + AE ++ N LA ++ + S ++ A Y E L
Sbjct: 143 LDSQETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLAR 202
Query: 398 LLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIID 457
++ A+S ++ +I Y+S P L+FA+FT NQA+LE F ++H+ID
Sbjct: 203 RIYRIYPRDDVALSSFSDTLQIHFYES----CPYLKFAHFTANQAILEVFATAEKVHVID 258
Query: 458 FDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPF 517
+ +G QW +L+Q L R GPP ++T S T D E+G+ L AS I + F
Sbjct: 259 LGLNHGLQWPALIQALALRPNGPPDFRLTGIGYSLT-DIQEVGW---KLGQLASTIGVNF 314
Query: 518 XXXXXXXXXXXXASWPLPLQ---GLENDVTAVN--LPIGVFSNYPATFPLVLRFVKQLQP 572
P L GLE+ AVN + +P + L +K ++P
Sbjct: 315 EFKSIALNNLSDLK-PEMLDIRPGLES--VAVNSVFELHRLLAHPGSIDKFLSTIKSIRP 371
Query: 573 KIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKI 632
I+ +++ + F +L YS L +SL+ + D + E FL + +
Sbjct: 372 DIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPP-SQDRVMS-ELFLGRQILNLV 429
Query: 633 VL-GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQR-TPVRGFHVEKRQSS 688
G R E L WR+ F GF P++ + A QA L+ G++VE+ +
Sbjct: 430 ACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEGC 489
Query: 689 LVLCWQRKELISATAWR 705
L+L WQ + LI+ +AWR
Sbjct: 490 LLLGWQTRPLIATSAWR 506
>TAIR|locus:2005516 [details] [associations]
symbol:RGA1 "REPRESSOR OF GA1-3 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0009740
"gibberellic acid mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009651 "response
to salt stress" evidence=IGI;RCA] [GO:0009723 "response to ethylene
stimulus" evidence=IGI;RCA] [GO:0009737 "response to abscisic acid
stimulus" evidence=IGI;RCA] [GO:0042538 "hyperosmotic salinity
response" evidence=IGI;RCA] [GO:0010029 "regulation of seed
germination" evidence=IGI] [GO:2000033 "regulation of seed dormancy
process" evidence=IGI] [GO:0010187 "negative regulation of seed
germination" evidence=IGI] [GO:0010218 "response to far red light"
evidence=IEP] [GO:2000377 "regulation of reactive oxygen species
metabolic process" evidence=IGI] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=IGI;RCA] [GO:0042176
"regulation of protein catabolic process" evidence=IMP] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010325 "raffinose family
oligosaccharide biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] [GO:0046686
"response to cadmium ion" evidence=RCA] [GO:0048444 "floral organ
morphogenesis" evidence=RCA] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=IGI]
Pfam:PF03514 GO:GO:0007275 GO:GO:0009737 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009723 GO:GO:0003700
GO:GO:0006351 GO:GO:0010218 GO:GO:0010187 GO:GO:0042176
GO:GO:0042538 EMBL:AC005560 GO:GO:2000377 GO:GO:0040029
GO:GO:0009867 GO:GO:0009740 eggNOG:NOG243696 HOGENOM:HOG000238577
KO:K14494 ProtClustDB:CLSN2682993 GO:GO:0009938 GO:GO:2000033
InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041 PROSITE:PS50985
EMBL:Y11336 EMBL:Y15194 EMBL:AY052239 EMBL:AY054160 EMBL:BT010467
IPI:IPI00523272 PIR:D84426 RefSeq:NP_178266.1 UniGene:At.24012
ProteinModelPortal:Q9SLH3 SMR:Q9SLH3 IntAct:Q9SLH3 STRING:Q9SLH3
PRIDE:Q9SLH3 EnsemblPlants:AT2G01570.1 GeneID:814686
KEGG:ath:AT2G01570 GeneFarm:4238 TAIR:At2g01570 InParanoid:Q9SLH3
OMA:VHALMAC PhylomeDB:Q9SLH3 Genevestigator:Q9SLH3
GermOnline:AT2G01570 Uniprot:Q9SLH3
Length = 587
Score = 327 (120.2 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 107/394 (27%), Positives = 169/394 (42%)
Query: 321 TMGVTATATKQKMVNDELANQQLQQA-VIDQIFKAAELIEMGNPVLAQGILARLNHQLSP 379
T T TA + + L + Q ++ + AE I+ N LA+ ++ ++
Sbjct: 194 TTTTTTTAAGESTRSVILVDSQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVS 253
Query: 380 VVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTC 439
++ A Y EAL ++ ++ P + + F E P L+FA+FT
Sbjct: 254 QAGAMRKVATYFAEALARRIY-RLSPPQNQIDH---CLSDTLQMHFYETCPYLKFAHFTA 309
Query: 440 NQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFEL 499
NQA+LEAFEG R+H+IDF + G QW +LMQ L R GPP+ ++T + + L
Sbjct: 310 NQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHL 369
Query: 500 GFTQENLKHFASEINIPFXXXXXXXXXXXX--ASWPLPLQGLENDVTAVN--LPIGVFSN 555
L A I++ F AS L L+ + + AVN +
Sbjct: 370 HEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASM-LELRPSDTEAVAVNSVFELHKLLG 428
Query: 556 YPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLD 615
P VL VKQ++P I +++ + F +L YS L +SL+ V + D
Sbjct: 429 RPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQD 488
Query: 616 ALQKIERFLVYPCIEKIVL-GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLV 672
+ E +L + G R E L W + F SG AP + A QA L+
Sbjct: 489 KVMS-EVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLL 547
Query: 673 QR-TPVRGFHVEKRQSSLVLCWQRKELISATAWR 705
+G+ VE+ L+L W + LI+ +AW+
Sbjct: 548 SVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWK 581
>TAIR|locus:2157477 [details] [associations]
symbol:RGL3 "RGA-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP;ISS] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;TAS] [GO:0009686 "gibberellin
biosynthetic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009723 "response to ethylene
stimulus" evidence=RCA] [GO:0009737 "response to abscisic acid
stimulus" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009863 "salicylic acid mediated signaling
pathway" evidence=RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010325 "raffinose family
oligosaccharide biosynthetic process" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0048444 "floral
organ morphogenesis" evidence=RCA] Pfam:PF03514 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0040029 EMBL:AL391150 GO:GO:0009740
HOGENOM:HOG000238577 KO:K14494 InterPro:IPR021914
InterPro:IPR005202 Pfam:PF12041 PROSITE:PS50985
ProtClustDB:CLSN2684085 EMBL:AK117226 EMBL:BT005905 IPI:IPI00544591
PIR:T51475 RefSeq:NP_197251.1 UniGene:At.31541
ProteinModelPortal:Q9LF53 SMR:Q9LF53 PaxDb:Q9LF53 PRIDE:Q9LF53
EnsemblPlants:AT5G17490.1 GeneID:831615 KEGG:ath:AT5G17490
GeneFarm:4241 TAIR:At5g17490 eggNOG:NOG300920 InParanoid:Q9LF53
OMA:RRIYRIH PhylomeDB:Q9LF53 Genevestigator:Q9LF53
GermOnline:AT5G17490 Uniprot:Q9LF53
Length = 523
Score = 323 (118.8 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 105/391 (26%), Positives = 177/391 (45%)
Query: 324 VTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKP 383
VT+ +T+ ++ +E +L QA++ AE +++ N LA ++ R+ +
Sbjct: 139 VTSESTRSVVLIEE-TGVRLVQALV----ACAEAVQLENLSLADALVKRVGLLAASQAGA 193
Query: 384 FQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQAL 443
+ A Y EAL ++ + +A + I +++ Y S P L+FA+FT NQA+
Sbjct: 194 MGKVATYFAEALARRIYRIHPSAAAIDPSFEEILQMNFYDS----CPYLKFAHFTANQAI 249
Query: 444 LEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEF-ELGFT 502
LEA +H+ID + G QW +LMQ L R GPPS ++T + S + ELG+
Sbjct: 250 LEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGNPSNREGIQELGW- 308
Query: 503 QENLKHFASEINIPFXXXXXXXXXXXXASWPLPLQGLENDVTAVN--LPIGVFSNYPATF 560
L A I + F + E++ VN + + P +
Sbjct: 309 --KLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVFELHPVLSQPGSI 366
Query: 561 PLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI 620
+L VK ++P +V +++ + F AL YS L +SL+ V + + ++
Sbjct: 367 EKLLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLED-GVVIPSQDRV 425
Query: 621 --ERFLVYPCIEKIVL-GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRT 675
E +L + + G R E L WR +GF P+ + A QA L+ +
Sbjct: 426 MSEVYLGRQILNLVATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALS 485
Query: 676 PVR-GFHVEKRQSSLVLCWQRKELISATAWR 705
G+ VE+ SL+L WQ K LI+A+AW+
Sbjct: 486 GGGDGYRVEENDGSLMLAWQTKPLIAASAWK 516
>TAIR|locus:2080345 [details] [associations]
symbol:SCR "SCARECROW" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009630
"gravitropism" evidence=IMP] [GO:0009956 "radial pattern formation"
evidence=IMP] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042803 "protein homodimerization
activity" evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0051457 "maintenance of protein location in
nucleus" evidence=IMP] [GO:0008356 "asymmetric cell division"
evidence=IMP] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006351
GO:GO:0009630 GO:GO:0008356 GO:GO:0051457 EMBL:AL132957
GO:GO:0010103 GO:GO:0009956 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:U62798 EMBL:AY056315 EMBL:AY080840
EMBL:AY113991 IPI:IPI00524888 PIR:T47581 PIR:T51244
RefSeq:NP_190990.1 UniGene:At.71814 UniGene:At.932 IntAct:Q9M384
STRING:Q9M384 EnsemblPlants:AT3G54220.1 GeneID:824589
KEGG:ath:AT3G54220 GeneFarm:4242 TAIR:At3g54220 eggNOG:NOG311437
InParanoid:Q9M384 OMA:QERENSS PhylomeDB:Q9M384
ProtClustDB:CLSN2915643 Genevestigator:Q9M384 Uniprot:Q9M384
Length = 653
Score = 318 (117.0 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 123/480 (25%), Positives = 205/480 (42%)
Query: 237 DEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLS 296
D PQ F P Q + NP+ P Q Q+ Q PPP P Q+
Sbjct: 198 DPSPQTFEPLY-------QISNNPSP--PQQQQQHQQQQQQHKPPPP-----PIQQQERE 243
Query: 297 DSGXXXXXXXXXXXXXXXXXXXXXTMGVTATATKQKMVNDELANQQLQQA---VIDQIFK 353
+S TA A +++ +E+ Q+ + ++ + +
Sbjct: 244 NSSTDAPPQPETVTATVPAVQTN-----TAEALRER--KEEIKRQKQDEEGLHLLTLLLQ 296
Query: 354 AAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEAL--QLL---LHMNMNTPSA 408
AE + N A +L ++ +P QR A Y EA+ +LL L + PS
Sbjct: 297 CAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSR 356
Query: 409 AMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWAS 468
M + + +SA++ F+ ISP+++F++FT NQA+ EAFE + +HIID DI G QW
Sbjct: 357 WMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPG 416
Query: 469 LMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXXXXXX 528
L L R GPP +++T +S L T + L FA ++ +PF
Sbjct: 417 LFHILASRPGGPPHVRLTGLGTSME----ALQATGKRLSDFADKLGLPFEFCPLAEKVGN 472
Query: 529 XASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFP 588
+ L ++ + + AV+ + + L +++L PK+V +++
Sbjct: 473 LDTERLNVR--KREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAG-S 529
Query: 589 FAHHMVHALQSYSGLLESLD-SVNVNLDALQKIERFLVYPCIEKIVL--GRHRSPE-RLP 644
F V A+ YS L +SL S + +E+ L+ I ++ G RS E +
Sbjct: 530 FLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFE 589
Query: 645 PWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAW 704
WR Q GF ++ + A +QA L+ P G+ + +L L W+ L++A+AW
Sbjct: 590 SWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAW 649
Score = 49 (22.3 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 245 PQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSP 279
PQLI N + + NP L L Y +++ LL P
Sbjct: 160 PQLIQNVRDIIFPCNPNLGALLEY-RLRSLMLLDP 193
>TAIR|locus:2101694 [details] [associations]
symbol:AT3G50650 "AT3G50650" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003700 GO:GO:0006351 EMBL:AL132979
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000240374
ProtClustDB:CLSN2684429 EMBL:AK229252 EMBL:AF036304 IPI:IPI00542878
PIR:T46142 PIR:T51238 RefSeq:NP_190634.1 UniGene:At.42939
PaxDb:Q9SCR0 PRIDE:Q9SCR0 EnsemblPlants:AT3G50650.1 GeneID:824228
KEGG:ath:AT3G50650 GeneFarm:4248 TAIR:At3g50650 eggNOG:NOG329237
InParanoid:Q9SCR0 OMA:LIRIKES PhylomeDB:Q9SCR0
Genevestigator:Q9SCR0 Uniprot:Q9SCR0
Length = 542
Score = 315 (115.9 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 109/376 (28%), Positives = 172/376 (45%)
Query: 351 IFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAM 410
IFKA P L R+ +S P QR +Y EAL H +PS++
Sbjct: 177 IFKAIHDYAR-KPETKPDTLIRIKESVSESGDPIQRVGYYFAEALS---HKETESPSSSS 232
Query: 411 SGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLM 470
S F +S YK+ ++ P +FA+ T NQA+LEA N IHI+DF I G QW++L+
Sbjct: 233 SSSLEDFILS-YKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQWSALL 291
Query: 471 QELVFRSEGPPS-LKITAFTSSSTHDEF--ELGFTQENLKHFAS--EINIPFXXXXXXXX 525
Q L RS G P+ ++I+ + S D L T L+ FA+ ++N F
Sbjct: 292 QALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVLTPIQ 351
Query: 526 XXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLV---LRFVKQLQPKIVVSLDRSC 582
+S+ + ++V VN + ++ T V LR + L P+IV +
Sbjct: 352 LLNGSSFRVD----PDEVLVVNFMLELYKLLDETATTVGTALRLARSLNPRIVTLGEYEV 407
Query: 583 DRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQK--IERFLVYPCIEKIVLGR--HR 638
FA+ + ++L+ YS + ESL+ N++ D+ ++ +ER L I +V +
Sbjct: 408 SLNRVEFANRVKNSLRFYSAVFESLEP-NLDRDSKERLRVERVLFGRRIMDLVRSDDDNN 466
Query: 639 SP-------ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFH--VEKRQSSL 689
P E WR L ++GF P+ SN+A SQA L+ + VE +
Sbjct: 467 KPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFI 526
Query: 690 VLCWQRKELISATAWR 705
L W L++ ++WR
Sbjct: 527 SLAWNNVPLLTVSSWR 542
>TAIR|locus:2099624 [details] [associations]
symbol:RGL2 "RGA-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;TAS] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA;TAS] [GO:0010187 "negative regulation of seed
germination" evidence=IMP] [GO:0009938 "negative regulation of
gibberellic acid mediated signaling pathway" evidence=TAS]
[GO:0009651 "response to salt stress" evidence=IGI] [GO:0009723
"response to ethylene stimulus" evidence=IGI;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;IGI;RCA]
[GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
[GO:2000033 "regulation of seed dormancy process" evidence=IGI]
[GO:0009739 "response to gibberellin stimulus" evidence=IEP]
[GO:2000377 "regulation of reactive oxygen species metabolic
process" evidence=IGI] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=IGI;RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=IGI;RCA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009062 "fatty acid catabolic process"
evidence=RCA] [GO:0009686 "gibberellin biosynthetic process"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010325 "raffinose family oligosaccharide biosynthetic process"
evidence=RCA] [GO:0048444 "floral organ morphogenesis"
evidence=RCA] [GO:0048608 "reproductive structure development"
evidence=RCA] Pfam:PF03514 GO:GO:0009737 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0030154 GO:GO:0006952
GO:GO:0009723 GO:GO:0003700 GO:GO:0006351 GO:GO:0010187
GO:GO:0009908 GO:GO:0042538 EMBL:AC009895 GO:GO:2000377
GO:GO:0040029 GO:GO:0009867 GO:GO:0009863 GO:GO:0009740
eggNOG:NOG243696 HOGENOM:HOG000238577 KO:K14494 GO:GO:0009938
GO:GO:2000033 InterPro:IPR021914 InterPro:IPR005202 Pfam:PF12041
PROSITE:PS50985 EMBL:AK118009 IPI:IPI00521981 RefSeq:NP_186995.1
UniGene:At.18489 UniGene:At.67027 ProteinModelPortal:Q8GXW1
SMR:Q8GXW1 IntAct:Q8GXW1 STRING:Q8GXW1 EnsemblPlants:AT3G03450.1
GeneID:821251 KEGG:ath:AT3G03450 GeneFarm:4240 TAIR:At3g03450
InParanoid:Q8GXW1 OMA:MLSELNN PhylomeDB:Q8GXW1
ProtClustDB:CLSN2684085 Genevestigator:Q8GXW1 GermOnline:AT3G03450
Uniprot:Q8GXW1
Length = 547
Score = 307 (113.1 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 95/377 (25%), Positives = 157/377 (41%)
Query: 340 NQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLL 399
+Q+ ++ + AE I N LA ++ R+ + A Y +AL +
Sbjct: 173 SQETGVRLVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRI 232
Query: 400 HMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFD 459
+ + + + N F+ F E P L+FA+FT NQA+LEA R+H+ID
Sbjct: 233 YRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLG 292
Query: 460 IGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXX 519
+ G QW +LMQ L R GPPS ++T T + L L FA + + F
Sbjct: 293 LNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEF 352
Query: 520 XXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNY-----PATFPLVLRFVKQLQPKI 574
+ E++ VN VF + + +L VK ++P I
Sbjct: 353 KGLAAESLSDLEPEMFETRPESETLVVN---SVFELHRLLARSGSIEKLLNTVKAIKPSI 409
Query: 575 VVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI--ERFLVYPCIEKI 632
V +++ + F AL YS L +SL+ + +L + ++ E +L + +
Sbjct: 410 VTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLED-SYSLPSQDRVMSEVYLGRQILNVV 468
Query: 633 VL-GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVR-GFHVEKRQSS 688
G R E WR +GF P+ + A QA L+ G+ VE+
Sbjct: 469 AAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGC 528
Query: 689 LVLCWQRKELISATAWR 705
L++ WQ + LI+ +AW+
Sbjct: 529 LMIGWQTRPLITTSAWK 545
Score = 45 (20.9 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 107 SNPPSVDITNTEKCGGLGMEDWESV--LSGSPNQEQ 140
+NP S D+ T C D ++ LS P +E+
Sbjct: 106 NNPASSDLDTTRSCVDRSEYDLRAIPGLSAFPKEEE 141
>TAIR|locus:2132482 [details] [associations]
symbol:AT4G08250 "AT4G08250" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 EMBL:AL080252 EMBL:AL161510
EMBL:BT011797 IPI:IPI00529829 PIR:T10552 RefSeq:NP_192565.1
UniGene:At.50325 DNASU:826375 EnsemblPlants:AT4G08250.1
GeneID:826375 KEGG:ath:AT4G08250 GeneFarm:4263 TAIR:At4g08250
eggNOG:NOG320032 HOGENOM:HOG000239937 InParanoid:Q9SUF5 OMA:SLEAGFP
PhylomeDB:Q9SUF5 ProtClustDB:CLSN2685964 Genevestigator:Q9SUF5
Uniprot:Q9SUF5
Length = 483
Score = 295 (108.9 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 107/355 (30%), Positives = 161/355 (45%)
Query: 365 LAQGILARLNHQLSPVVKP-FQRAAFYVKEALQLLLHMN-MNTPSAAMSG-YNIIFKISA 421
L + ILARL +SP + +R A + L LL + + P Y+ ISA
Sbjct: 124 LTRVILARLKDLVSPGDRTNMERLAAHFTNGLSKLLERDSVLCPQQHRDDVYDQADVISA 183
Query: 422 YKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPP 481
++ +SP + F T QA+LEA + RIHI+D+DI G QWASLMQ LV R+ GP
Sbjct: 184 FELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPS 243
Query: 482 S--LKITAFTSSSTHDEFELGFTQEN---LKHFASEINIPFXXXXXXXXXXXXASWPLPL 536
+ L+ITA S +T+ + + QE L FA I PF ++ L L
Sbjct: 244 AQHLRITAL-SRATNGKKSVAAVQETGRRLTAFADSIGQPFSYQHCKLDTNAFSTSSLKL 302
Query: 537 QGLENDVTAVNLPIGVFSNY-PATFPLVLRFVKQLQPKIVVSLDRSCD-RPDFPFAHHMV 594
E V L + FS+ P++ L K L PK+V + + F + +
Sbjct: 303 VRGEAVVINCMLHLPRFSHQTPSSVISFLSEAKTLNPKLVTLVHEEVGLMGNQGFLYRFM 362
Query: 595 HALQSYSGLLESLDS-VNVNLDALQKIERFLVYPCIEKI---VLGRHRSPERLPPWRSLF 650
L +S + +SL++ +++ A +ER + P + + E W
Sbjct: 363 DLLHQFSAIFDSLEAGLSIANPARGFVERVFIGPWVANWLTRITANDAEVESFASWPQWL 422
Query: 651 MQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKR-QSSLVLCWQRKELISATAW 704
+GF PL S QA L+ GF VE+ Q+ LVL W+ + L+SA+ W
Sbjct: 423 ETNGFKPLEVSFTNRCQAKLLLSLFN-DGFRVEELGQNGLVLGWKSRRLVSASFW 476
>TAIR|locus:2164783 [details] [associations]
symbol:PAT1 "AT5G48150" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0004871 "signal transducer activity" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009640 "photomorphogenesis"
evidence=IMP] Pfam:PF03514 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0009640
GO:GO:0004871 EMBL:AB023039 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AF153443 EMBL:BT025326 EMBL:AK117483
IPI:IPI00517897 RefSeq:NP_199626.1 RefSeq:NP_974903.1
UniGene:At.7076 PRIDE:Q9LDL7 EnsemblPlants:AT5G48150.1
EnsemblPlants:AT5G48150.2 GeneID:834867 KEGG:ath:AT5G48150
GeneFarm:4233 TAIR:At5g48150 eggNOG:NOG287245 InParanoid:Q9LDL7
OMA:NSAHARG PhylomeDB:Q9LDL7 ProtClustDB:CLSN2686580
Genevestigator:Q9LDL7 Uniprot:Q9LDL7
Length = 490
Score = 290 (107.1 bits), Expect = 8.8e-23, P = 8.8e-23
Identities = 96/373 (25%), Positives = 164/373 (43%)
Query: 351 IFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAM 410
+ A+ + + ++A ++ +L +S +P QR Y+ E L L + ++ A+
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182
Query: 411 SGYN--IIFKISAYKSFS-EISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWA 467
+ ++ +Y E+ P +F + N A+ EA + NR+HIIDF IG G QW
Sbjct: 183 NRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWV 242
Query: 468 SLMQELVFRSEGPPSLKITAFTS-SSTHDEFE-LGFTQENLKHFASEINIPFXXXXXXXX 525
+L+Q R GPP ++IT +S + L L A + N+PF
Sbjct: 243 TLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVS 302
Query: 526 XXXXASWPLPLQGLENDVTAVNLPIGVFSNYP----ATF---PLVLRFVKQLQPKIVVSL 578
P L + AVN V + P +T +LR VK L PK+V +
Sbjct: 303 VSEVK--PKNLGVRPGEALAVNFAF-VLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLV 359
Query: 579 DRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI--ERFLVYPCIEKIVL-- 634
++ + F + + Y+ + ES+D V + D Q+I E+ + + I+
Sbjct: 360 EQESNTNTAAFFPRFMETMNYYAAMFESID-VTLPRDHKQRINVEQHCLARDVVNIIACE 418
Query: 635 GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLC 692
G R E L WRS F +GF P S S L++ + + +E+R +L L
Sbjct: 419 GADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDK-YRLEERDGALYLG 477
Query: 693 WQRKELISATAWR 705
W ++L+++ AW+
Sbjct: 478 WMHRDLVASCAWK 490
>TAIR|locus:2044973 [details] [associations]
symbol:SCL21 "AT2G04890" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003700 GO:GO:0006351 EMBL:AC006955 EMBL:AC007211
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
EMBL:AF210732 EMBL:AK175210 EMBL:AK175990 EMBL:AK176099
EMBL:AK221099 EMBL:BT026455 IPI:IPI00534889 PIR:G84462
RefSeq:NP_178566.1 UniGene:At.48419 UniGene:At.71110 IntAct:Q9S7H5
EnsemblPlants:AT2G04890.1 GeneID:815036 KEGG:ath:AT2G04890
GeneFarm:4231 TAIR:At2g04890 eggNOG:NOG292869 InParanoid:Q9S7H5
OMA:HKERINI PhylomeDB:Q9S7H5 ProtClustDB:CLSN2912915
Genevestigator:Q9S7H5 Uniprot:Q9S7H5
Length = 413
Score = 283 (104.7 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 91/364 (25%), Positives = 159/364 (43%)
Query: 355 AELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYN 414
A+ + N ++A+ + L +S +P QR Y+ E L L + ++ ++
Sbjct: 58 AKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSRE 117
Query: 415 I-IFKISAYKS-FSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQE 472
++ +Y E+ P +F + N A+ EA + RIHIIDF IG G QW +L+Q
Sbjct: 118 PESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQA 177
Query: 473 LVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXXXXXXXASW 532
R G P+++IT S L ++ L+ A + ++PF
Sbjct: 178 FAARPGGAPNIRITGVGDGSV-----LVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVE 232
Query: 533 PLPLQGLENDVTAVNLPIGVFSNYPATFPL------VLRFVKQLQPKIVVSLDRSCDRPD 586
L ++ + + VN + + + +LR VK L PK+V +++ C+
Sbjct: 233 NLDVR--DGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNT 290
Query: 587 FPFAHHMVHALQSYSGLLESLD-SVNVNLDALQKIERFLVYPCIEKIVL--GRHRSP--E 641
PF + L Y+ + ES+D + N IE+ + + I+ G R E
Sbjct: 291 SPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHE 350
Query: 642 RLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISA 701
L W+S F +GF P S+ + L+ R G+ +E+R +L L W + L+S+
Sbjct: 351 LLGKWKSRFSMAGFEPYPLSSIISATIRALL-RDYSNGYAIEERDGALYLGWMDRILVSS 409
Query: 702 TAWR 705
AW+
Sbjct: 410 CAWK 413
>TAIR|locus:2165685 [details] [associations]
symbol:AT5G41920 "AT5G41920" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351 EMBL:AB017067
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
EMBL:BT029760 IPI:IPI00535918 RefSeq:NP_199007.1 UniGene:At.67848
UniGene:At.72727 IntAct:Q9FHZ1 DNASU:834197
EnsemblPlants:AT5G41920.1 GeneID:834197 KEGG:ath:AT5G41920
GeneFarm:4246 TAIR:At5g41920 eggNOG:NOG72098 InParanoid:Q9FHZ1
OMA:PWKGYTL PhylomeDB:Q9FHZ1 ProtClustDB:CLSN2686419
Genevestigator:Q9FHZ1 Uniprot:Q9FHZ1
Length = 405
Score = 281 (104.0 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 90/367 (24%), Positives = 167/367 (45%)
Query: 347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQL-LLHMNMNT 405
++ + + AE + + A +L+ ++ SP +R Y +ALQ ++ ++
Sbjct: 40 LLSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSG 99
Query: 406 PSAAMSGYNIIF----KI-SAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDI 460
+ +S + KI SA ++++ +SP+++F++FT NQA+ +A +G + +HIID D+
Sbjct: 100 ACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDV 159
Query: 461 GYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXX 520
G QW +L L R S++IT F SSS L T L FAS +N+PF
Sbjct: 160 MQGLQWPALFHILASRPRKLRSIRITGFGSSSDL----LASTGRRLADFASSLNLPFEFH 215
Query: 521 XXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDR 580
P L + + V+ + L +++L+P ++ +++
Sbjct: 216 PIEGIIGNLID-PSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQ 274
Query: 581 SCDRPDF-PFAHHMVHALQSYSGLLESL-DSVNVNLDALQKIERFLVYPCIEKIVLGRHR 638
D F V AL YS L ++L D + +E+ ++ I IV
Sbjct: 275 ELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGG 334
Query: 639 SPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKEL 698
+R+ W+ + GF P++ +QA L+ P G+ + + +L L W+ L
Sbjct: 335 RRKRMK-WKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSL 393
Query: 699 ISATAWR 705
++A+AW+
Sbjct: 394 LTASAWK 400
>TAIR|locus:2008086 [details] [associations]
symbol:SCL3 "AT1G50420" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP] Pfam:PF03514 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
GO:GO:0009739 EMBL:AC012561 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY056154 EMBL:AY091260 EMBL:AF036301
IPI:IPI00539428 PIR:E96540 PIR:T51235 RefSeq:NP_175459.1
UniGene:At.14826 IntAct:Q9LPR8 STRING:Q9LPR8
EnsemblPlants:AT1G50420.1 GeneID:841464 KEGG:ath:AT1G50420
GeneFarm:4258 TAIR:At1g50420 eggNOG:NOG310008 InParanoid:Q9LPR8
OMA:MVHVIDL PhylomeDB:Q9LPR8 ProtClustDB:CLSN2913643
Genevestigator:Q9LPR8 Uniprot:Q9LPR8
Length = 482
Score = 183 (69.5 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 56/178 (31%), Positives = 84/178 (47%)
Query: 347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEAL--QLL-----L 399
+I + A + G+ A L +L+H SP QR A Y EAL ++L L
Sbjct: 54 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGL 113
Query: 400 HMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFD 459
+ +N + N+ +I + F E+ PIL+ + N+A+LEA EG +H+ID D
Sbjct: 114 YKALNATQTRTN--NVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLD 171
Query: 460 IGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPF 517
QW +L+Q R EGPP L+IT H + L L A +++IPF
Sbjct: 172 ASEPAQWLALLQAFNSRPEGPPHLRITGVH----HQKEVLEQMAHRLIEEAEKLDIPF 225
Score = 154 (59.3 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 38/143 (26%), Positives = 68/143 (47%)
Query: 570 LQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSV--NVNLDALQKIERFLVYP 627
L PK++V ++ D ++ +L +Y+ L + L++ + D + K+E+ L
Sbjct: 339 LSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRI-KVEKMLFGE 397
Query: 628 CIEKIV----LGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVE 683
I+ I+ R E+L W +GF + S +A QA L+Q G+ ++
Sbjct: 398 EIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIK 457
Query: 684 KRQSSLVLCWQRKELISATAWRC 706
+ V+CWQ + L S +AWRC
Sbjct: 458 EESGCAVICWQDRPLYSVSAWRC 480
>TAIR|locus:2008076 [details] [associations]
symbol:SCL5 "AT1G50600" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005829 "cytosol" evidence=IDA] Pfam:PF03514
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 EMBL:AC079279 EMBL:AC012561
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
eggNOG:NOG287245 EMBL:AY034929 EMBL:AY039611 EMBL:BT000883
EMBL:AF036302 IPI:IPI00519165 PIR:E96542 PIR:T51236
RefSeq:NP_175475.2 UniGene:At.14827 STRING:Q8H125 PaxDb:Q8H125
PRIDE:Q8H125 EnsemblPlants:AT1G50600.1 GeneID:841482
KEGG:ath:AT1G50600 GeneFarm:4229 TAIR:At1g50600 InParanoid:Q8H125
OMA:REERHEP PhylomeDB:Q8H125 ProtClustDB:CLSN2918355
ArrayExpress:Q8H125 Genevestigator:Q8H125 Uniprot:Q8H125
Length = 597
Score = 281 (104.0 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 97/373 (26%), Positives = 165/373 (44%)
Query: 351 IFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAM 410
+++ A+ +E + + ++++L +S +P QR Y+ E L L + ++ A+
Sbjct: 231 LYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKAL 290
Query: 411 SGYNIIF-KISAYKSFS-EISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWAS 468
+ ++ Y E P +F + N A+ EA + + +HIIDF I GGQW S
Sbjct: 291 RCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVS 350
Query: 469 LMQELVFRSEGPPSLKITAFTS--SSTHDEFELGFTQENLKHFASEINIPFXXXXXXXXX 526
L++ L R GPP+++IT SS + L + L A +PF
Sbjct: 351 LIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCC 410
Query: 527 XXXASWPLPLQGLEN-DVTAVNLPIGVFSNYPATFPLV-------LRFVKQLQPKIVVSL 578
L G+ N + AVN P+ V + P V LR VK L P +V +
Sbjct: 411 TEVEIEKL---GVRNGEALAVNFPL-VLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLV 466
Query: 579 DRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI---ERFLVYPCIEKIV-- 633
++ + PF V + Y + ES+D V + D ++I + L + I
Sbjct: 467 EQEANTNTAPFLPRFVETMNHYLAVFESID-VKLARDHKERINVEQHCLAREVVNLIACE 525
Query: 634 -LGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLC 692
+ R E L WRS F +GF P S++ + L++ + + +E+R +L L
Sbjct: 526 GVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLG 584
Query: 693 WQRKELISATAWR 705
W+ + LI++ AWR
Sbjct: 585 WKNQPLITSCAWR 597
>UNIPROTKB|Q84MM9 [details] [associations]
symbol:MOC1 "Protein MONOCULM 1" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IDA]
[GO:0010014 "meristem initiation" evidence=IMP] Pfam:PF03514
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 InterPro:IPR005202
PROSITE:PS50985 EMBL:AY242058 EMBL:AP003616 Gramene:Q84MM9
eggNOG:NOG323432 GO:GO:0010014 Uniprot:Q84MM9
Length = 441
Score = 202 (76.2 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 349 DQIFKAAELIEMGN-PVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPS 407
D + A+L++ G+ P + L SP R A++ AL L +
Sbjct: 52 DLLLACADLLQRGDLPAARRAAEIVLAAAASPRGDAADRLAYHFARALALRVDAKAGHGH 111
Query: 408 AAMSGYNIIFKIS-AYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQW 466
+ G S AY +F++I+P L+FA+ T NQA+LEA +G R+HI+D D +G QW
Sbjct: 112 VVVGGGAARPASSGAYLAFNQIAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQW 171
Query: 467 ASLMQELVFRSE---GPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPF 517
L+Q + R++ GPP +++T + D L T L+ FA I++PF
Sbjct: 172 PPLLQAIAERADPALGPPEVRVTGAGA----DRDTLLRTGNRLRAFARSIHLPF 221
Score = 102 (41.0 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 44/156 (28%), Positives = 74/156 (47%)
Query: 564 LRFVKQLQPKIVVSLDRSC-------DRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDA 616
L++VK + P +V +R D D + A+ YS + E+L++ V +
Sbjct: 287 LKWVKAMSPAVVTIAEREAGGGGGGGDHID-DLPRRVGVAMDHYSAVFEALEAT-VPPGS 344
Query: 617 LQK--IERFLVYPCIEKIVL---GRH-RSPERLPPWRSLFMQSGFAPLTFSNFAESQADC 670
++ +E+ ++ IE V GR R ER W +GFA S FA SQA
Sbjct: 345 RERLAVEQEVLGREIEAAVGPSGGRWWRGIER---WGGAARAAGFAARPLSAFAVSQARL 401
Query: 671 LVQ-RTPVRGFHVEKRQSSLVLCWQRKELISATAWR 705
L++ P G+ V++ + + L WQ + L+S +AW+
Sbjct: 402 LLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAWQ 437
>TAIR|locus:2020487 [details] [associations]
symbol:LAS "AT1G55580" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010223 "secondary shoot formation" evidence=IMP]
Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 EMBL:AC002328 GO:GO:0010223
HOGENOM:HOG000238577 InterPro:IPR005202 PROSITE:PS50985
eggNOG:NOG323432 EMBL:AY196482 EMBL:BT026519 EMBL:EF598379
EMBL:EF598380 EMBL:EF598381 EMBL:EF598382 EMBL:EF598383
EMBL:EF598384 EMBL:EF598385 EMBL:EF598386 EMBL:EF598387
EMBL:EF598388 EMBL:EF598389 EMBL:EF598390 EMBL:EF598391
EMBL:EF598392 EMBL:EF598393 EMBL:EF598394 EMBL:EF598395
EMBL:EF598396 EMBL:EF598397 EMBL:EF598398 EMBL:EF598399
EMBL:EF598400 EMBL:EF598401 EMBL:EF598402 IPI:IPI00532485
RefSeq:NP_175954.1 UniGene:At.45199 STRING:Q9ZWC5
EnsemblPlants:AT1G55580.1 GeneID:842007 KEGG:ath:AT1G55580
GeneFarm:4247 TAIR:At1g55580 InParanoid:Q9ZWC5 OMA:EREANHG
PhylomeDB:Q9ZWC5 ProtClustDB:CLSN2682663 Genevestigator:Q9ZWC5
Uniprot:Q9ZWC5
Length = 445
Score = 249 (92.7 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 81/312 (25%), Positives = 137/312 (43%)
Query: 414 NIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNR--IHIIDFDIGYGGQWASLMQ 471
N F+ Y ++++P ++F + T NQA+L+A E + +HI+D DI G QW LMQ
Sbjct: 138 NSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQ 197
Query: 472 ELVFRSEGP----PSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXXXXX 527
L RS P PSL+IT D L T + L FA + + F
Sbjct: 198 ALAERSSNPSSPPPSLRITG----CGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEE 253
Query: 528 XXASWPLP-----LQGLENDVTAVNLPI---GVFSNYPATFPLVLRFVKQLQPKIVVSLD 579
A L L ++ + AVN +F++ L +K L +IV +
Sbjct: 254 DLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGHFLSAIKSLNSRIVTMAE 313
Query: 580 RSCDRPDFPFAHHMVHALQSYSGLLESLDSVNV--NLDALQKIERFLVYPCIEKIVLG-- 635
R + D F + A+ Y + +SL++ + + L +R+ ++ +
Sbjct: 314 REANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEET 373
Query: 636 -RHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQ-RTPVRGFHVEKRQSSLVLCW 693
R + R W + + GF + +FA SQA L++ P G++++ +SL L W
Sbjct: 374 ERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGW 433
Query: 694 QRKELISATAWR 705
Q + L S ++W+
Sbjct: 434 QNRPLFSVSSWK 445
>TAIR|locus:2015243 [details] [associations]
symbol:AT1G63100 "AT1G63100" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0048451 "petal formation" evidence=RCA]
[GO:0048453 "sepal formation" evidence=RCA] Pfam:PF03514
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700
GO:GO:0006351 EMBL:AC010795 InterPro:IPR005202 PROSITE:PS50985
IPI:IPI00520577 PIR:D96656 RefSeq:NP_176498.1 UniGene:At.66082
ProteinModelPortal:Q9CAN3 SMR:Q9CAN3 PRIDE:Q9CAN3
EnsemblPlants:AT1G63100.1 GeneID:842613 KEGG:ath:AT1G63100
GeneFarm:4261 TAIR:At1g63100 eggNOG:NOG286854 HOGENOM:HOG000241666
InParanoid:Q9CAN3 OMA:RTKCENE PhylomeDB:Q9CAN3
ProtClustDB:CLSN2682380 Genevestigator:Q9CAN3 Uniprot:Q9CAN3
Length = 658
Score = 252 (93.8 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 106/412 (25%), Positives = 169/412 (41%)
Query: 323 GVTATATKQKMVNDELANQ-QLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVV 381
G T T + N+ N Q +++ + + I N +AR SP
Sbjct: 249 GATEERTTGNINNNNNRNDLQRDFELVNLLTGCLDAIRSRNIAAINHFIARTGDLASPRG 308
Query: 382 K-PFQRAAFYVKEALQLLL-----HMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFA 435
+ P R Y EAL L + H+ P +A + ++++PI +F
Sbjct: 309 RTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFI 368
Query: 436 NFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHD 495
+FT N+ LL AFEG R+HIIDFDI G QW S Q L R P ++IT S
Sbjct: 369 HFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGES---- 424
Query: 496 EFELGFTQENLKHFASEINIPFXXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSN 555
+ EL T + L FA +N+ F W L ++ E + AVN + +
Sbjct: 425 KLELNETGDRLHGFAEAMNLQFEFHPVVDRLEDVRLWMLHVK--EGESVAVNCVMQMHKT 482
Query: 556 -YPATFPLVLRF---VKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVN 611
Y T + F ++ P +V ++ + + ++L+ YS + +++ + N
Sbjct: 483 LYDGTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHT-N 541
Query: 612 VNLDALQ--KIERFLVYPCIEKIVL--GRHRSPERLP--PWRSLFMQSGFAPLTFSNFAE 665
+ D+L K+E L I IV G HR + WR + Q GF L S
Sbjct: 542 LATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREV 601
Query: 666 SQADCLVQR--TPVRGF-HVEK----------RQSSLVLCWQRKELISATAW 704
Q+ L++ + GF +VE+ R + L W + L + +AW
Sbjct: 602 LQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653
>TAIR|locus:2026982 [details] [associations]
symbol:SCL1 "AT1G21450" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] Pfam:PF03514 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
EMBL:AC015447 HOGENOM:HOG000238577 InterPro:IPR005202
PROSITE:PS50985 EMBL:AF210731 EMBL:AY045833 EMBL:AY096626
EMBL:AY084492 EMBL:AF036300 IPI:IPI00538394 PIR:E86347 PIR:T51234
RefSeq:NP_173566.1 UniGene:At.14825 ProteinModelPortal:Q9SDQ3
STRING:Q9SDQ3 PaxDb:Q9SDQ3 PRIDE:Q9SDQ3 EnsemblPlants:AT1G21450.1
GeneID:838743 KEGG:ath:AT1G21450 GeneFarm:4232 TAIR:At1g21450
eggNOG:NOG324880 InParanoid:Q9SDQ3 OMA:SINDEWA PhylomeDB:Q9SDQ3
ProtClustDB:CLSN2913658 Genevestigator:Q9SDQ3 Uniprot:Q9SDQ3
Length = 593
Score = 233 (87.1 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
Identities = 92/389 (23%), Positives = 158/389 (40%)
Query: 335 NDELANQQL-QQAVIDQIF-KAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVK 392
N ++++++ QA QI A + G A ++ L +S P QR A Y+
Sbjct: 208 NSHVSSKEVVSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMV 267
Query: 393 EALQLLLHMNMNTPSAAMSGYNIIF--KISAYKSFSEISPILQFANFTCNQALLEAFEGC 450
E L + + A+ +++A + E+ P +F N A+LEA +G
Sbjct: 268 EGLAARMAASGKFIYRALKCKEPPSDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGE 327
Query: 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEF--ELGFTQENLKH 508
+HIIDFDI G Q+ +L++ + P L++T + L L+
Sbjct: 328 EEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQ 387
Query: 509 FASEINIPFXXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLV----- 563
A + + F + P L + VN + + V
Sbjct: 388 LAEDNGVSFKFKAMPSKTSIVS--PSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDE 445
Query: 564 -LRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQK--I 620
L VK L PK+V +++ + PF + A + YS + ESLD + + ++ ++ +
Sbjct: 446 LLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLD-MTLPRESQERMNV 504
Query: 621 ERFLVYPCIEKIVL--GRHRSP--ERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTP 676
ER + I IV G R E WR+ M +GF P S + L+++
Sbjct: 505 ERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQY 564
Query: 677 VRGFHVEKRQSSLVLCWQRKELISATAWR 705
+ +++ L CW+ K LI A+AWR
Sbjct: 565 CNKYKLKEEMGELHFCWEEKSLIVASAWR 593
Score = 61 (26.5 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 140 QSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVN 199
Q + R ++GD DD +G++ ++ D+E++ +++ ++P SS+ D + V+
Sbjct: 159 QELERALLGDEDDKMVGIDNLMEIDSEWS----YQNESEQHQDSP--KESSSADSNSHVS 212
Query: 200 SARLGSVSTQNHIFSMAA 217
S + S +T I A
Sbjct: 213 SKEVVSQATPKQILISCA 230
>TAIR|locus:2075155 [details] [associations]
symbol:AT3G46600 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016671 "oxidoreductase
activity, acting on a sulfur group of donors, disulfide as
acceptor" evidence=IEA] [GO:0019538 "protein metabolic process"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003700 GO:GO:0006351 GO:GO:0010200 EMBL:AL133314
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000238576
ProtClustDB:CLSN2685117 EMBL:AK226419 EMBL:AY087418 IPI:IPI00537144
PIR:T45597 RefSeq:NP_190244.1 UniGene:At.595 STRING:Q9SNB8
EnsemblPlants:AT3G46600.1 GeneID:823813 KEGG:ath:AT3G46600
GeneFarm:4254 TAIR:At3g46600 eggNOG:NOG304481 InParanoid:Q9SNB8
OMA:FNESESQ PhylomeDB:Q9SNB8 Genevestigator:Q9SNB8 Uniprot:Q9SNB8
Length = 583
Score = 226 (84.6 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 83/338 (24%), Positives = 136/338 (40%)
Query: 385 QRAAFYVKEALQLLLHMNMNTP-SAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQAL 443
QR ++ EAL+ + M TP SA S +++ + AYK F + P L FT N+ +
Sbjct: 247 QRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTI 306
Query: 444 LEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFT--SSSTHDEFELGF 501
E +HIIDF I YG QW L+Q L R GPP L++T S +
Sbjct: 307 NELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEE 366
Query: 502 TQENLKHFASEINIPFXXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFP 561
T LK F + N+PF L + + T VN + + T
Sbjct: 367 TGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINS--GETTVVNCILRLQYTPDETVS 424
Query: 562 L------VLRFVKQLQPKIVV--SLDRSCDRPDF--PFAHHMVHALQSYSGLLESLDSVN 611
L L+ + + P + V ++ + + P F F + H S + E+ S +
Sbjct: 425 LNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHC-SSLFDMYETTLSED 483
Query: 612 VNLDALQKIERFLVYPCIEKIVL--GRHR--SPERLPPWRSLFMQSGFAPLTFSNFAESQ 667
N L +ER L+ ++ G R PE W+ +++GF P S
Sbjct: 484 DNCRTL--VERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKD 541
Query: 668 ADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWR 705
+V+ + F ++ + W+ + L + + W+
Sbjct: 542 GKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 579
>TAIR|locus:2148293 [details] [associations]
symbol:AT5G59450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0010200 "response to chitin" evidence=IEP;RCA]
Pfam:PF03514 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003700 GO:GO:0006351 GO:GO:0010200 EMBL:AB025604
InterPro:IPR005202 PROSITE:PS50985 EMBL:AY035001 EMBL:AY062942
EMBL:AF036307 IPI:IPI00541926 PIR:T51233 RefSeq:NP_200753.1
UniGene:At.29225 UniGene:At.63919 UniGene:At.72775 STRING:Q9LTI5
EnsemblPlants:AT5G59450.1 GeneID:836064 KEGG:ath:AT5G59450
GeneFarm:4255 TAIR:At5g59450 eggNOG:NOG254902 HOGENOM:HOG000238576
InParanoid:Q9LTI5 OMA:KPATISK PhylomeDB:Q9LTI5
ProtClustDB:CLSN2685117 Genevestigator:Q9LTI5 Uniprot:Q9LTI5
Length = 610
Score = 226 (84.6 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 85/341 (24%), Positives = 142/341 (41%)
Query: 385 QRAAFYVKEALQLLLHMNMNTPSA---AMSGYNIIFKISAYKSFSEISPILQFANFTCNQ 441
QR AFY EAL+ + N++ P + S +++ + AYK F PI F N+
Sbjct: 262 QRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANK 321
Query: 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFT--SSSTHDEFEL 499
++ E ++HI+DF + YG QW L++ L R GPP L++T + +
Sbjct: 322 SIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRV 381
Query: 500 GFTQENLKHFASEINIPFXXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPAT 559
T LK F + N+PF L + + T VN + T
Sbjct: 382 EETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELMIN--PGETTVVNCIHRLQYTPDET 439
Query: 560 FPL------VLRFVKQLQPKIVV--SLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVN 611
L VL+ + + P + V ++ + P F F AL YS L + D+
Sbjct: 440 VSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSP-F-FMTRFREALFHYSSLFDMFDTTI 497
Query: 612 VNLDALQK---IER-FLVYPCIEKIVL-GRHR--SPERLPPWRSLFMQSGFAPLTFSNFA 664
D + +ER LV + I G R PE WR +++GF P T S
Sbjct: 498 HAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQI 557
Query: 665 ESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWR 705
+A +V++ R F ++ + ++ W+ + + + + W+
Sbjct: 558 MKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 598
>TAIR|locus:2025022 [details] [associations]
symbol:SCL14 "SCARECROW-like 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009410 "response to xenobiotic stimulus" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0005634 GO:GO:0045893 GO:GO:0003700
GO:GO:0006351 GO:GO:0009410 EMBL:AC022464 InterPro:IPR005202
PROSITE:PS50985 HOGENOM:HOG000238576 EMBL:AF036309 IPI:IPI00525012
PIR:T51232 RefSeq:NP_172233.1 UniGene:At.21921 STRING:Q9XE58
PaxDb:Q9XE58 PRIDE:Q9XE58 EnsemblPlants:AT1G07530.1 GeneID:837267
KEGG:ath:AT1G07530 GeneFarm:4250 TAIR:At1g07530 eggNOG:NOG319005
OMA:HEDFVVD PhylomeDB:Q9XE58 Genevestigator:Q9XE58 Uniprot:Q9XE58
Length = 769
Score = 181 (68.8 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 79/370 (21%), Positives = 145/370 (39%)
Query: 355 AELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGY- 413
A+ + + + A +L ++ SP+ +R A Y +L+ L A+S
Sbjct: 401 AQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKK 460
Query: 414 -NIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQE 472
+ + AY+++ + P + A N +++ N IHIIDF I YG QW +L+
Sbjct: 461 TSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHR 520
Query: 473 L-VFRSEGPPSLKITAFTSSSTHDEFELGF--TQENLKHFASEINIPFXXXXXXXXXXXX 529
L + R G P L+IT G T L + N+PF
Sbjct: 521 LSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETI 580
Query: 530 ASWPLPLQGLENDVTAVN--------LPIGVFSNYPATFPLVLRFVKQLQPKIVVS--LD 579
L L+ + + VN L V N P VL+ ++++ P + + L
Sbjct: 581 QVEDLKLR--QGEYVVVNSLFRFRNLLDETVLVNSPRD--AVLKLIRKINPNVFIPAILS 636
Query: 580 RSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKI--ERFLVYPCIEKIVL-GR 636
+ + P F F AL YS + + DS D ++ + + F + + G
Sbjct: 637 GNYNAP-F-FVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGT 694
Query: 637 HR--SPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQ 694
R PE W++ +++GF L ++ + F V++ + L+ W+
Sbjct: 695 ERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWK 754
Query: 695 RKELISATAW 704
+ + +++ W
Sbjct: 755 GRIVYASSLW 764
>TAIR|locus:2184625 [details] [associations]
symbol:SCL8 "AT5G52510" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
Pfam:PF03514 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 EMBL:AP000378 EMBL:AF036305
EMBL:AY099686 EMBL:AY128868 IPI:IPI00531227 PIR:T51239
RefSeq:NP_200064.3 UniGene:At.22412 UniGene:At.71617 STRING:Q9FYR7
PRIDE:Q9FYR7 EnsemblPlants:AT5G52510.1 GeneID:835327
KEGG:ath:AT5G52510 GeneFarm:4234 TAIR:At5g52510 eggNOG:NOG240925
HOGENOM:HOG000239354 InParanoid:Q9FYR7 OMA:PGAPWRD PhylomeDB:Q9FYR7
ProtClustDB:CLSN2680518 Genevestigator:Q9FYR7 Uniprot:Q9FYR7
Length = 640
Score = 111 (44.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 39/149 (26%), Positives = 65/149 (43%)
Query: 563 VLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSV--NVNLDALQKI 620
+LR VK L+P++V +++ + PF + + Y LLES++S + N D K+
Sbjct: 495 LLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRA-KV 553
Query: 621 ERFLVYPCIEKIV---LGRHRSPERLPPWRSLFMQSGFAPLTFSN-FAESQADCLVQRTP 676
E + + + + R E WR +GF + S AES + P
Sbjct: 554 EEGIGRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNRVHP 613
Query: 677 VRGFHVEKRQSSLVLCWQRKELISATAWR 705
GF V++ + W + L A+AWR
Sbjct: 614 --GFTVKEDNGGVCFGWMGRALTVASAWR 640
Score = 102 (41.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 351 IFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAM 410
+ + A I G +A ILAR++ +P ++ + + + + + L + +P +
Sbjct: 269 VMEIATAIAEGKTEIATEILARVSQ--TPNLE--RNSEEKLVDFMVAALRSRIASPVTEL 324
Query: 411 SGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFE---GCNRI-HIIDFDIGYGGQW 466
G + IS + E+SP + N A+L+A + G I H+IDFDIG GGQ+
Sbjct: 325 YGKEHL--ISTQLLY-ELSPCFKLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQY 381
Query: 467 ASLMQELVFR------SEGPPSLKITAFTSS 491
+L++ L R S+ P +KITA ++
Sbjct: 382 VNLLRTLSTRRNGKSQSQNSPVVKITAVANN 412
>TAIR|locus:2120106 [details] [associations]
symbol:SHR "AT4G37650" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008356 "asymmetric cell division"
evidence=IMP] [GO:0009956 "radial pattern formation" evidence=IMP]
[GO:0032350 "regulation of hormone metabolic process" evidence=NAS]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0055072 "iron ion
homeostasis" evidence=IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] Pfam:PF03514 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 GO:GO:0007049 EMBL:AL035605 EMBL:AL161591
GO:GO:0048366 GO:GO:0008356 GO:GO:0055072 GO:GO:0009956
GO:GO:0032350 InterPro:IPR005202 PROSITE:PS50985 EMBL:AF233752
EMBL:BT033026 EMBL:AY074547 IPI:IPI00525426 PIR:T04722
RefSeq:NP_195480.1 UniGene:At.2816 UniGene:At.71893 IntAct:Q9SZF7
STRING:Q9SZF7 PaxDb:Q9SZF7 PRIDE:Q9SZF7 EnsemblPlants:AT4G37650.1
GeneID:829919 KEGG:ath:AT4G37650 GeneFarm:4260 TAIR:At4g37650
eggNOG:NOG301144 HOGENOM:HOG000078767 InParanoid:Q9SZF7 OMA:EIGNRME
PhylomeDB:Q9SZF7 ProtClustDB:CLSN2685807 Genevestigator:Q9SZF7
Uniprot:Q9SZF7
Length = 531
Score = 147 (56.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 60/249 (24%), Positives = 100/249 (40%)
Query: 351 IFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLL-------HMNM 403
+ +AA + AQ IL LN SP Q+ A Y +AL + + M
Sbjct: 147 LLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTM 206
Query: 404 NTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYG 463
T +A + F E+SP F + N A+LEA +G +IHI+D +
Sbjct: 207 VTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFC 266
Query: 464 GQWASLMQELVFRSEGPPSLKITA------FTSSSTHDEFELGFTQENLKHFASEINIPF 517
QW +L++ L RS+ P L++T F + T + ++ FA + +PF
Sbjct: 267 TQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPF 326
Query: 518 XXXXXXXXXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPAT-FP--LVLRFVKQLQPKI 574
L ++V A+N +G + P V+ ++L+P+I
Sbjct: 327 KFNIIHHVGDLSEFDLNELDVKPDEVLAINC-VGAMHGIASRGSPRDAVISSFRRLRPRI 385
Query: 575 VVSLDRSCD 583
V ++ D
Sbjct: 386 VTVVEEEAD 394
Score = 60 (26.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 646 WRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEK--RQSSLVLCWQRKELISATA 703
W SGF + +S+ L++R + + + + + LCW+ + ++ A+A
Sbjct: 468 WSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASA 527
Query: 704 WR 705
WR
Sbjct: 528 WR 529
>TAIR|locus:2025032 [details] [associations]
symbol:AT1G07520 "AT1G07520" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
Pfam:PF03514 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0006355 GO:GO:0006351 GO:GO:0010200 EMBL:AC022464
InterPro:IPR005202 PROSITE:PS50985 PIR:T51232 eggNOG:NOG319005
EMBL:AB493440 EMBL:BX839686 IPI:IPI00525480 IPI:IPI01019456
RefSeq:NP_172232.1 UniGene:At.63938 UniGene:At.71785 STRING:Q3EDH0
PRIDE:Q3EDH0 GeneID:837266 KEGG:ath:AT1G07520 GeneFarm:4253
TAIR:At1g07520 InParanoid:Q3EDH0 OMA:VRIENEV Genevestigator:Q3EDH0
Uniprot:Q3EDH0
Length = 695
Score = 160 (61.4 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 86/380 (22%), Positives = 145/380 (38%)
Query: 355 AELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYN 414
A+ + G+ + A +L ++ Q SPV QR A + AL+ L + T S Y+
Sbjct: 323 AQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGT--MIQSYYD 380
Query: 415 IIFK--------ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQW 466
I + +Y F SP + F N+ +L+A + + +HI+DF I YG QW
Sbjct: 381 SISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASVLHIVDFGILYGFQW 440
Query: 467 ASLMQELVFRSEGPPSLKITAFT--SSSTHDEFELGFTQENLKHFASEINIPFXXXXXXX 524
+Q L + G L+IT + T L + +PF
Sbjct: 441 PMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIAS 500
Query: 525 XXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPL--------VLRFVKQLQPKIVV 576
+ N+V AVN + F N P L+ ++ + P + +
Sbjct: 501 KNWETIKME-EFKIRPNEVLAVNAVLR-FKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFL 558
Query: 577 S--LDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIE---RFLVYPCIEK 631
S ++ S + P F F AL YS L + L ++ + ++I F +
Sbjct: 559 SSTVNGSFNAP-F-FTTRFKEALFHYSALFD-LFGATLSKENPERIHFEGEFYGREVMNV 615
Query: 632 IV---LGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFH---VEKR 685
I + R PE W+ +++GF AE ++ G+H V
Sbjct: 616 IACEGVDRVERPETYKQWQVRMIRAGFKQKPVE--AEL-VQLFREKMKKWGYHKDFVLDE 672
Query: 686 QSSLVLC-WQRKELISATAW 704
S+ L W+ + L S++ W
Sbjct: 673 DSNWFLQGWKGRILFSSSCW 692
>TAIR|locus:2083073 [details] [associations]
symbol:AT3G49950 "AT3G49950" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03514 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003700 GO:GO:0006351 EMBL:AL132978
InterPro:IPR005202 PROSITE:PS50985 eggNOG:NOG309215 EMBL:BT012553
EMBL:AK226623 IPI:IPI00534186 PIR:T45848 RefSeq:NP_190564.1
UniGene:At.50260 EnsemblPlants:AT3G49950.1 GeneID:824157
KEGG:ath:AT3G49950 GeneFarm:4259 TAIR:At3g49950
HOGENOM:HOG000241523 InParanoid:Q9SN22 OMA:MSMDFRV PhylomeDB:Q9SN22
ProtClustDB:CLSN2684384 Genevestigator:Q9SN22 Uniprot:Q9SN22
Length = 410
Score = 110 (43.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 417 FKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFR 476
F + +F +++P +F N A+L A EG + +HI+D + + Q +L+ + R
Sbjct: 102 FSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASR 161
Query: 477 -SEGPPSLKITAFTSSSTHDEF-ELGFTQ--ENLKHFASEINI 515
++ PP LK+T +SS F + + + L +FA+ NI
Sbjct: 162 LNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNI 204
Score = 63 (27.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 30/147 (20%), Positives = 60/147 (40%)
Query: 564 LRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQS-YSGLLESLDSVNVNLDALQKIER 622
L+ ++ L P+IV ++ D + ++V+ L+S ++ D+ + + ++
Sbjct: 265 LKQLRSLNPRIVTLIEEDVDLT----SENLVNRLKSAFNYFWIPFDTTDTFMSEQRRWYE 320
Query: 623 FLVYPCIEKIVL--GRHR--SPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVR 678
+ IE +V G R E W ++ F + A + +++ V
Sbjct: 321 AEISWKIENVVAKEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVG 380
Query: 679 -GFHVEKRQSSLVLCWQRKELISATAW 704
G E SLVL W+ ++ AT W
Sbjct: 381 WGMKKEDDDESLVLTWKGHSVVFATVW 407
>TAIR|locus:2040701 [details] [associations]
symbol:AT2G37650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] EMBL:AC004684 Pfam:PF03514 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003700 GO:GO:0006351
InterPro:IPR005202 PROSITE:PS50985 HOGENOM:HOG000238576
eggNOG:NOG319005 EMBL:AF036306 IPI:IPI00536640 PIR:T02531
PIR:T51240 RefSeq:NP_181301.1 UniGene:At.26205 UniGene:At.66411
PaxDb:O80933 PRIDE:O80933 EnsemblPlants:AT2G37650.1 GeneID:818342
KEGG:ath:AT2G37650 GeneFarm:4256 TAIR:At2g37650 InParanoid:O80933
OMA:WERVERP PhylomeDB:O80933 ProtClustDB:CLSN2912903
Genevestigator:O80933 Uniprot:O80933
Length = 718
Score = 123 (48.4 bits), Expect = 0.00051, P = 0.00051
Identities = 58/301 (19%), Positives = 113/301 (37%)
Query: 419 ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSE 478
+ A++ F P + + F N+ + + R+H+IDF I YG QW +L+ F
Sbjct: 418 LKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHR--FSMY 475
Query: 479 GPPSLKITA--FTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXXXXXXXASWPLPL 536
G P ++IT F + T + L +A +PF L +
Sbjct: 476 GSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDI 535
Query: 537 QGLENDVTAVNLPIGVFSNYPATFPL------VLRFVKQLQPKIVV-SLDRSCDRPDFPF 589
+++T VN + + + + VL + ++ P + V + F F
Sbjct: 536 D--RDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPF-F 592
Query: 590 AHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVY--PCIEKIVL-GRHR--SPERLP 644
AL +S + + L+++ D + V+ + I G R PE
Sbjct: 593 VTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYK 652
Query: 645 PWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAW 704
W M+SG + F + V + F +++ L+ W+ + +++ + W
Sbjct: 653 QWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVW 712
Query: 705 R 705
+
Sbjct: 713 K 713
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 706 617 0.00089 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 626 (67 KB)
Total size of DFA: 331 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.21u 0.12s 46.33t Elapsed: 00:00:02
Total cpu time: 46.22u 0.12s 46.34t Elapsed: 00:00:02
Start: Tue May 21 03:19:33 2013 End: Tue May 21 03:19:35 2013