BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005237
         (706 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
 pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
           Aquifex Aeolicus Vf5
          Length = 345

 Score = 32.7 bits (73), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 7/49 (14%)

Query: 530 ASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSL 578
           ASW L   G+ENDV  +++ +  FSN       ++R ++++QP  V +L
Sbjct: 41  ASWRLKELGIENDVKIIHMDLLEFSN-------IIRTIEKVQPDEVYNL 82


>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
          Length = 297

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 579 DRSCDRPDFPFAHHMVHALQSYSGL 603
           DR  D PDFP+A H +  L  + GL
Sbjct: 9   DRFADLPDFPYAPHYLEGLPGFEGL 33


>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
          Hydrolase (Family 31) From Ruminococcus Obeum Atcc
          29174
 pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
          Hydrolase (Family 31) From Ruminococcus Obeum Atcc
          29174
          Length = 666

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 42 LSNSNRGNKKANCCYVGSATTEPTSVLDNR 71
          L  SNRG  K   CY+ + T +P    D R
Sbjct: 56 LGESNRGINKRGYCYISNCTADPIHTEDKR 85


>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
           From Corynebacterium Glutamicum
 pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
           From Corynebacterium Glutamicum
          Length = 239

 Score = 28.9 bits (63), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 25/106 (23%)

Query: 113 DITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFG 172
           DI  T +     +E W ++ S +   +  +   ++   DDPSL L   L  D EF+    
Sbjct: 97  DIYETRQL----LEGWAALHSSAERGDWDVAEALLEKMDDPSLPLEDFLRFDAEFHVVI- 151

Query: 173 VVDQASLGFETPFTSV---------------SSNIDPDFVVNSARL 203
                S G E P  S                 +   PD+   SARL
Sbjct: 152 -----SKGAENPLISTLMEALRLSVADHTVARARALPDWRATSARL 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,493,566
Number of Sequences: 62578
Number of extensions: 625353
Number of successful extensions: 981
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 4
length of query: 706
length of database: 14,973,337
effective HSP length: 106
effective length of query: 600
effective length of database: 8,340,069
effective search space: 5004041400
effective search space used: 5004041400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)