Query 005237
Match_columns 706
No_of_seqs 141 out of 752
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 20:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 1.5E-98 3E-103 810.7 37.2 358 347-705 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.9 0.061 1.3E-06 55.7 17.5 189 427-658 34-226 (247)
3 TIGR00740 methyltransferase, p 95.8 0.4 8.8E-06 49.0 16.1 169 451-657 53-222 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.5 1.5 3.3E-05 44.2 18.8 179 441-660 35-216 (231)
5 TIGR02716 C20_methyl_CrtF C-20 95.1 0.71 1.5E-05 49.1 15.7 116 440-582 138-257 (306)
6 TIGR01934 MenG_MenH_UbiE ubiqu 90.3 17 0.00038 35.8 16.4 117 439-581 27-145 (223)
7 TIGR00477 tehB tellurite resis 90.1 3.2 7E-05 41.5 11.2 112 438-576 17-129 (195)
8 PLN02336 phosphoethanolamine N 89.0 29 0.00062 39.4 18.9 114 439-579 254-368 (475)
9 PRK08317 hypothetical protein; 88.6 26 0.00057 34.6 16.3 111 443-578 11-122 (241)
10 PRK12335 tellurite resistance 87.5 6 0.00013 42.0 11.6 97 454-577 123-220 (287)
11 PRK00216 ubiE ubiquinone/menaq 87.3 33 0.00072 34.2 17.9 113 443-578 43-156 (239)
12 PLN02233 ubiquinone biosynthes 87.2 38 0.00083 35.6 17.3 183 439-660 61-246 (261)
13 PF13847 Methyltransf_31: Meth 87.1 5 0.00011 38.0 9.7 106 450-579 2-109 (152)
14 PRK11207 tellurite resistance 87.0 9.3 0.0002 38.3 12.0 112 439-577 18-131 (197)
15 PF09243 Rsm22: Mitochondrial 86.9 4 8.6E-05 43.5 9.8 140 434-597 12-156 (274)
16 PTZ00098 phosphoethanolamine N 86.6 24 0.00051 37.2 15.3 116 437-578 38-154 (263)
17 PRK06202 hypothetical protein; 85.3 14 0.00029 37.7 12.4 111 447-579 56-166 (232)
18 PF01209 Ubie_methyltran: ubiE 83.0 3.6 7.9E-05 42.8 7.2 180 442-662 38-220 (233)
19 PRK14103 trans-aconitate 2-met 81.4 13 0.00028 38.5 10.6 107 441-580 19-126 (255)
20 PRK01683 trans-aconitate 2-met 79.1 23 0.0005 36.5 11.5 111 439-580 19-130 (258)
21 PF13489 Methyltransf_23: Meth 78.2 30 0.00065 32.0 11.0 96 449-581 20-117 (161)
22 PLN02244 tocopherol O-methyltr 77.7 1E+02 0.0023 33.7 16.6 101 451-578 118-221 (340)
23 TIGR00537 hemK_rel_arch HemK-r 75.3 57 0.0012 31.8 12.6 102 454-581 22-141 (179)
24 PF13649 Methyltransf_25: Meth 75.3 4.3 9.4E-05 35.7 4.3 97 455-572 1-99 (101)
25 PRK05134 bifunctional 3-demeth 75.2 94 0.002 31.4 14.5 104 449-579 46-150 (233)
26 PRK10909 rsmD 16S rRNA m(2)G96 73.9 52 0.0011 33.6 12.2 105 453-584 55-163 (199)
27 PRK09489 rsmC 16S ribosomal RN 73.1 49 0.0011 36.6 12.6 115 441-579 186-302 (342)
28 PRK11036 putative S-adenosyl-L 72.6 37 0.0008 35.2 11.0 110 441-578 35-147 (255)
29 PLN02336 phosphoethanolamine N 71.4 36 0.00079 38.5 11.5 115 441-580 27-142 (475)
30 TIGR00138 gidB 16S rRNA methyl 71.2 72 0.0016 31.9 12.3 97 453-580 44-142 (181)
31 smart00138 MeTrc Methyltransfe 70.8 22 0.00048 37.6 9.0 44 448-491 96-141 (264)
32 TIGR02021 BchM-ChlM magnesium 70.2 45 0.00098 33.6 10.8 116 434-578 36-156 (219)
33 PF12847 Methyltransf_18: Meth 69.6 12 0.00027 32.9 5.8 105 454-579 4-110 (112)
34 TIGR01983 UbiG ubiquinone bios 65.9 1.5E+02 0.0032 29.6 14.3 102 451-579 45-148 (224)
35 PRK05785 hypothetical protein; 64.5 1.4E+02 0.003 30.9 13.1 32 452-491 52-83 (226)
36 smart00650 rADc Ribosomal RNA 63.9 87 0.0019 30.4 11.0 110 441-581 3-114 (169)
37 PRK11705 cyclopropane fatty ac 63.4 76 0.0017 35.6 11.8 108 441-578 157-265 (383)
38 PRK00107 gidB 16S rRNA methylt 62.7 1.5E+02 0.0032 30.0 12.7 98 452-580 46-145 (187)
39 TIGR03587 Pse_Me-ase pseudamin 62.3 68 0.0015 32.6 10.3 99 454-581 46-144 (204)
40 TIGR02081 metW methionine bios 60.9 1.3E+02 0.0028 29.9 11.8 40 442-491 6-45 (194)
41 PRK15001 SAM-dependent 23S rib 60.8 68 0.0015 36.2 10.8 108 454-580 231-340 (378)
42 PF00891 Methyltransf_2: O-met 60.6 80 0.0017 32.3 10.6 108 441-581 90-201 (241)
43 TIGR02072 BioC biotin biosynth 60.3 60 0.0013 32.2 9.4 111 440-579 20-134 (240)
44 PRK07580 Mg-protoporphyrin IX 59.9 1.4E+02 0.0031 29.7 12.1 99 450-577 62-162 (230)
45 PF13679 Methyltransf_32: Meth 59.3 77 0.0017 30.1 9.5 42 447-491 21-62 (141)
46 PRK03522 rumB 23S rRNA methylu 59.1 1.3E+02 0.0027 32.6 12.2 99 453-580 175-274 (315)
47 TIGR03438 probable methyltrans 58.9 96 0.0021 33.3 11.2 118 443-580 57-177 (301)
48 TIGR03534 RF_mod_PrmC protein- 57.6 1.3E+02 0.0027 30.5 11.4 78 451-551 87-165 (251)
49 PLN02585 magnesium protoporphy 54.7 1.6E+02 0.0034 32.4 12.1 103 451-578 144-248 (315)
50 PRK00121 trmB tRNA (guanine-N( 54.3 1.3E+02 0.0027 30.4 10.6 127 451-601 40-173 (202)
51 smart00828 PKS_MT Methyltransf 53.5 1E+02 0.0022 30.9 9.8 100 454-578 2-102 (224)
52 PRK10258 biotin biosynthesis p 53.5 1.7E+02 0.0036 30.1 11.6 44 439-491 30-73 (251)
53 TIGR02085 meth_trns_rumB 23S r 53.2 1.7E+02 0.0036 32.7 12.2 98 454-580 236-334 (374)
54 TIGR00417 speE spermidine synt 52.5 2.5E+02 0.0055 29.6 12.9 132 454-608 75-211 (270)
55 PLN02396 hexaprenyldihydroxybe 49.4 1.2E+02 0.0026 33.4 10.2 100 452-579 132-234 (322)
56 PRK13168 rumA 23S rRNA m(5)U19 49.0 2.3E+02 0.0049 32.3 12.7 109 445-580 291-400 (443)
57 PF08241 Methyltransf_11: Meth 48.8 60 0.0013 27.0 6.3 91 456-577 1-94 (95)
58 PF08242 Methyltransf_12: Meth 48.4 10 0.00022 33.0 1.6 97 456-575 1-98 (99)
59 COG2227 UbiG 2-polyprenyl-3-me 48.0 48 0.001 35.4 6.6 100 451-578 59-159 (243)
60 PRK14968 putative methyltransf 47.9 2.4E+02 0.0052 27.0 11.1 32 451-491 23-54 (188)
61 PF02353 CMAS: Mycolic acid cy 47.8 1.9E+02 0.004 31.1 11.1 112 440-579 51-165 (273)
62 TIGR00452 methyltransferase, p 46.6 2.1E+02 0.0046 31.5 11.5 113 442-579 112-224 (314)
63 PRK15068 tRNA mo(5)U34 methylt 44.7 3.1E+02 0.0067 30.0 12.4 112 443-579 114-225 (322)
64 COG4106 Tam Trans-aconitate me 43.5 1E+02 0.0022 33.0 8.0 111 444-584 23-133 (257)
65 PRK06922 hypothetical protein; 43.0 2.6E+02 0.0056 34.2 12.3 106 453-578 420-535 (677)
66 PRK09328 N5-glutamine S-adenos 42.6 1.7E+02 0.0036 30.3 9.7 49 448-507 105-153 (275)
67 PF07521 RMMBL: RNA-metabolisi 41.6 45 0.00098 26.0 4.0 36 542-578 1-38 (43)
68 PRK13944 protein-L-isoaspartat 41.1 3.1E+02 0.0067 27.7 11.0 107 442-578 63-171 (205)
69 TIGR03439 methyl_EasF probable 40.4 3.1E+02 0.0067 30.4 11.6 150 442-606 69-234 (319)
70 PRK11873 arsM arsenite S-adeno 39.2 3.7E+02 0.0079 28.0 11.6 101 453-578 79-181 (272)
71 PRK00274 ksgA 16S ribosomal RN 37.8 2.3E+02 0.0049 30.1 9.9 40 443-491 34-73 (272)
72 COG2226 UbiE Methylase involve 36.9 5.5E+02 0.012 27.4 17.9 187 428-659 27-221 (238)
73 TIGR00536 hemK_fam HemK family 36.5 4.5E+02 0.0097 28.0 11.9 54 453-521 116-171 (284)
74 TIGR00755 ksgA dimethyladenosi 36.2 3.1E+02 0.0067 28.5 10.5 42 441-491 19-60 (253)
75 PLN02366 spermidine synthase 34.6 4.3E+02 0.0093 29.0 11.5 113 454-581 94-207 (308)
76 PRK00811 spermidine synthase; 32.8 3.3E+02 0.0072 29.1 10.2 133 454-606 79-214 (283)
77 TIGR00563 rsmB ribosomal RNA s 32.4 6.6E+02 0.014 28.4 13.0 69 439-522 226-294 (426)
78 COG1341 Predicted GTPase or GT 31.7 2.5E+02 0.0054 32.2 9.3 38 542-581 173-210 (398)
79 TIGR03533 L3_gln_methyl protei 31.5 6.5E+02 0.014 26.9 12.2 51 451-516 121-171 (284)
80 PLN02490 MPBQ/MSBQ methyltrans 31.0 3.2E+02 0.0068 30.5 9.9 100 451-578 113-213 (340)
81 PLN02446 (5-phosphoribosyl)-5- 30.9 53 0.0011 35.4 3.8 27 448-475 55-81 (262)
82 PTZ00338 dimethyladenosine tra 30.2 4.6E+02 0.01 28.5 10.8 41 442-491 27-67 (294)
83 PF03848 TehB: Tellurite resis 29.6 6.1E+02 0.013 26.1 11.0 111 441-578 20-131 (192)
84 PRK07402 precorrin-6B methylas 28.7 5.8E+02 0.013 25.2 12.7 114 437-580 26-142 (196)
85 PRK14121 tRNA (guanine-N(7)-)- 27.3 6E+02 0.013 29.1 11.4 118 442-580 113-235 (390)
86 COG2242 CobL Precorrin-6B meth 27.2 1.3E+02 0.0028 31.1 5.6 53 444-510 27-82 (187)
87 TIGR00091 tRNA (guanine-N(7)-) 26.9 4E+02 0.0088 26.5 9.1 126 451-599 16-147 (194)
88 cd02440 AdoMet_MTases S-adenos 26.8 3.4E+02 0.0073 21.8 8.8 102 454-579 1-103 (107)
89 TIGR00406 prmA ribosomal prote 26.7 5.6E+02 0.012 27.4 10.7 113 436-578 142-257 (288)
90 PRK04148 hypothetical protein; 25.5 2.7E+02 0.0058 27.2 7.2 75 443-525 8-113 (134)
91 TIGR01716 RGG_Cterm transcript 24.3 2E+02 0.0043 28.8 6.4 58 344-401 124-182 (220)
92 TIGR02129 hisA_euk phosphoribo 23.9 74 0.0016 34.1 3.4 26 448-477 50-75 (253)
93 PLN03075 nicotianamine synthas 23.5 8.1E+02 0.018 27.0 11.2 105 454-580 126-233 (296)
94 TIGR02469 CbiT precorrin-6Y C5 22.9 2.2E+02 0.0048 25.0 5.8 31 454-491 22-52 (124)
95 PF05175 MTS: Methyltransferas 21.8 3.7E+02 0.0079 26.2 7.5 117 439-577 19-137 (170)
96 PRK03612 spermidine synthase; 20.5 7.3E+02 0.016 29.1 10.8 112 454-581 300-416 (521)
97 COG2230 Cfa Cyclopropane fatty 20.1 5.2E+02 0.011 28.3 8.8 112 438-577 59-173 (283)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.5e-98 Score=810.68 Aligned_cols=358 Identities=36% Similarity=0.543 Sum_probs=323.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHhccCCCCccC-----CCchhHHHHHHH
Q 005237 347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAA-----MSGYNIIFKISA 421 (706)
Q Consensus 347 Lv~lLl~CAeAVesgn~~~A~~iLa~L~~~aSp~Gdp~QRlA~YFaeAL~~RL~~~~~~~~~~-----~sp~~~~~~i~A 421 (706)
|+++|++||+||++||.+.|+.+|++|++++||+|||+||+|+||++||.+||.+++...+.. .++.....++.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999976554421 122234567889
Q ss_pred HHHHHhhCCccchhHHHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHH
Q 005237 422 YKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGF 501 (706)
Q Consensus 422 yk~f~e~sP~lkFAhftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~ 501 (706)
|+.||++|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||+|++|.+.+..++++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986666678999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecccccccCCCCCCCCCCCceEEEecCc--ccccCC----CCCHHHHHHHHHhcCCcEE
Q 005237 502 TQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPI--GVFSNY----PATFPLVLRFVKQLQPKIV 575 (706)
Q Consensus 502 tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~--~~l~~~----p~~~~~vL~~IRsL~PkVV 575 (706)
||+||.+||+++||||||+.|..++++.... ..|++.+||+|||||++ |.+... ..+++.||+.||+|+|+||
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv 239 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV 239 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence 9999999999999999999975444433211 24677899999999986 444321 2468899999999999999
Q ss_pred EEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHhhhhhHhhhhc----cccCCCCChhhHHHHH
Q 005237 576 VSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNV-NLDALQKIERFLVYPCIEKIVL----GRHRSPERLPPWRSLF 650 (706)
Q Consensus 576 VlvEqeadhns~~F~~RF~EAL~yYsAlFDSLDa~~~-~~d~R~~IEr~llg~eI~nIVa----~R~ERhE~~~~Wr~Rm 650 (706)
|++|+|+|||+++|++||.|||+||+++|||||++.. ..++|.++|+.+|+++|+|||+ +|+||||++++|+.||
T Consensus 240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~ 319 (374)
T PF03514_consen 240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM 319 (374)
T ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence 9999999999999999999999999999999999753 4578999999999999999998 6999999999999999
Q ss_pred HhCCCccccCChhhHHHHHHHHhhCCCCCcEEEeeCCEEEEEECCceEEEEeeec
Q 005237 651 MQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWR 705 (706)
Q Consensus 651 ~rAGF~pvpLS~~a~~QAk~LL~~~~~~Gf~Veed~g~LlLgWk~rpLisvSAWr 705 (706)
++|||+++|+|.+++.||++||+++.++||+|++++|||+||||++||+++||||
T Consensus 320 ~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 320 RRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999998889999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.86 E-value=0.061 Score=55.66 Aligned_cols=189 Identities=10% Similarity=0.103 Sum_probs=98.4
Q ss_pred hhCCccchhHHHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHH
Q 005237 427 EISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENL 506 (706)
Q Consensus 427 e~sP~lkFAhftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL 506 (706)
...|.+...|-.++..+-.-+. ..-+|+|+|.|.|.--..|.+.+ ..|..++|||+.. +.-++.+.+++
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~S----~~ml~~A~~~~ 102 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDNS----PAMIERCRRHI 102 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeCC----HHHHHHHHHHH
Confidence 3466666666665543322222 23479999999987433332222 1346799999964 22355555555
Q ss_pred HHHHHhcCC--cEEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEE-EeecCC
Q 005237 507 KHFASEINI--PFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVV-SLDRSC 582 (706)
Q Consensus 507 ~~fA~~lgV--pFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVV-lvEqea 582 (706)
.+ .++ .++|..-.+.++ .+ .+.+++++|+.++.+.. ..+..+|+.| +.|+|...+ ++|.-.
T Consensus 103 ~~----~~~~~~v~~~~~d~~~~-------~~--~~~D~vv~~~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 103 DA----YKAPTPVDVIEGDIRDI-------AI--ENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred Hh----cCCCCCeEEEeCChhhC-------CC--CCCCEEehhhHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 43 333 344433222211 11 23457777877664432 2345677666 688998655 456432
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCccc
Q 005237 583 DRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPL 658 (706)
Q Consensus 583 dhns~~F~~RF~EAL~yYsAlFDSLDa~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pv 658 (706)
. .+......+.+..+.|. .....+.++ |++. ....++ +-++++......+|++|||..+
T Consensus 168 ~-~~~~~~~~~~~~~~~~~------~~~g~s~~e---i~~~--~~~~~~-----~~~~~~~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 168 F-EDAKVGELLFNMHHDFK------RANGYSELE---ISQK--RSMLEN-----VMLTDSVETHKARLHKAGFEHS 226 (247)
T ss_pred C-CcchhHHHHHHHHHHHH------HHcCCCHHH---HHHH--HHHHHh-----hcccCCHHHHHHHHHHcCchhH
Confidence 2 22333344444322221 211122221 2221 111233 3456889999999999999865
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.79 E-value=0.4 Score=49.01 Aligned_cols=169 Identities=13% Similarity=0.197 Sum_probs=85.9
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISA 530 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~ 530 (706)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.. +.-+..+.+++.++.. +..++|..-.+.++.
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s----~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNS----QPMVERCRQHIAAYHS--EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCC----HHHHHHHHHHHHhcCC--CCCeEEEECChhhCC--
Confidence 44579999999985 4455554321 246899999964 2235555556544321 223444432222211
Q ss_pred CCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhc
Q 005237 531 SWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDS 609 (706)
Q Consensus 531 ~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEqeadhns~~F~~RF~EAL~yYsAlFDSLDa 609 (706)
+. +.++|+++..++.+.. .....+|+.+ +.|+|.-++++-...-..+....+-+ ...|..... .+.
T Consensus 120 -----~~--~~d~v~~~~~l~~~~~--~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~---~~~~~~~~~-~~g 186 (239)
T TIGR00740 120 -----IK--NASMVILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL---IDLHHQFKR-ANG 186 (239)
T ss_pred -----CC--CCCEEeeecchhhCCH--HHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHH---HHHHHHHHH-HcC
Confidence 21 3457777776664422 2245666665 67899988775322111111111111 122222221 111
Q ss_pred CCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCcc
Q 005237 610 VNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAP 657 (706)
Q Consensus 610 ~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~p 657 (706)
.+.++ +++. ...+++ +.+..+.+.|..+++.|||..
T Consensus 187 --~~~~~---~~~~--~~~~~~-----~~~~~s~~~~~~~l~~aGF~~ 222 (239)
T TIGR00740 187 --YSELE---ISQK--RTALEN-----VMRTDSIETHKARLKNVGFSH 222 (239)
T ss_pred --CCHHH---HHHH--HHHHhc-----cCCCCCHHHHHHHHHHcCCch
Confidence 12221 1110 111223 346678899999999999974
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.47 E-value=1.5 Score=44.16 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FEL 519 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF 519 (706)
+.++..+.=.+.-+|+|+|.|.|.-. ..|+++- +|..+||||+.. +..++.+.+++. ..+++ .+|
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~~--~~~~~v~gvD~s----~~~~~~a~~~~~----~~~~~~v~~ 100 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEAV--GPEGHVIGLDFS----ENMLSVGRQKVK----DAGLHNVEL 100 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHHh--CCCCEEEEEECC----HHHHHHHHHHHH----hcCCCceEE
Confidence 45566555334457999999998732 3344321 235689999864 223444444443 33442 333
Q ss_pred EEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe-ecCCCCCCCChHHHHHHHH
Q 005237 520 EILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL-DRSCDRPDFPFAHHMVHAL 597 (706)
Q Consensus 520 ~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv-Eqeadhns~~F~~RF~EAL 597 (706)
..-..+++ .+....=+.|+.++.++.+. ....+|+. .+.|+|...+++ |.. ..+. ..+...+
T Consensus 101 ~~~d~~~~-------~~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~~-~~~~----~~~~~~~ 164 (231)
T TIGR02752 101 VHGNAMEL-------PFDDNSFDYVTIGFGLRNVP----DYMQVLREMYRVVKPGGKVVCLETS-QPTI----PGFKQLY 164 (231)
T ss_pred EEechhcC-------CCCCCCccEEEEecccccCC----CHHHHHHHHHHHcCcCeEEEEEECC-CCCC----hHHHHHH
Confidence 22111111 11111224676666554332 23455654 578899876654 433 2222 2233333
Q ss_pred HHHHHHhhhhhcCCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCccccC
Q 005237 598 QSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTF 660 (706)
Q Consensus 598 ~yYsAlFDSLDa~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pvpL 660 (706)
.+|...+-.+........ ..+...+...+ .+--+.+.++..|+.+||..+.+
T Consensus 165 ~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 165 FFYFKYIMPLFGKLFAKS---YKEYSWLQEST--------RDFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHcChhHHhhHHhcCC---HHHHHHHHHHH--------HHcCCHHHHHHHHHHcCCCeeEE
Confidence 333211111111000000 01111111122 22246678999999999987754
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.11 E-value=0.71 Score=49.13 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=65.3
Q ss_pred HHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc--E
Q 005237 440 NQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP--F 517 (706)
Q Consensus 440 NQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp--F 517 (706)
.+.|++.+.-.+.-+|+|+|-|.|. +..+++++. |.+++|+++.| ..++.+. +.++..|+. +
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-----~~~~~a~----~~~~~~gl~~rv 201 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-----GAIDLVN----ENAAEKGVADRM 201 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-----HHHHHHH----HHHHhCCccceE
Confidence 5678888765666799999999984 445555553 67899999853 1233333 344555654 4
Q ss_pred EEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEE-EeecCC
Q 005237 518 ELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVV-SLDRSC 582 (706)
Q Consensus 518 EF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVV-lvEqea 582 (706)
+|..- +-++. .+. +.+++.+...+|... +.....+|+.+ +.|+|.-.+ ++|.-.
T Consensus 202 ~~~~~--d~~~~-----~~~--~~D~v~~~~~lh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 202 RGIAV--DIYKE-----SYP--EADAVLFCRILYSAN--EQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEec--CccCC-----CCC--CCCEEEeEhhhhcCC--hHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 44332 22211 111 235555544344221 12234677766 689997655 456533
No 6
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=90.33 E-value=17 Score=35.76 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
.-..+++.+.-.+...|+|+|.|.|. +...++.+- +...++|+|+.. +..+..+.+++. .+-..+
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~----~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFS----SEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECC----HHHHHHHHHHhc-----cCCCce
Confidence 33456666655567899999999885 333444332 334789999853 222333434332 222344
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEE-eecC
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVS-LDRS 581 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVl-vEqe 581 (706)
|....+.++. +....=+.|+++..++.. .....+|+.+ +.|+|...++ ++..
T Consensus 92 ~~~~d~~~~~-------~~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 92 FIQADAEALP-------FEDNSFDAVTIAFGLRNV----TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEecchhcCC-------CCCCcEEEEEEeeeeCCc----ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4443222211 111122455556544432 2245566554 6788887665 4443
No 7
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.14 E-value=3.2 Score=41.54 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=66.4
Q ss_pred HHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcE
Q 005237 438 TCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPF 517 (706)
Q Consensus 438 tANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpF 517 (706)
++...|++++.-...-+|+|+|.|.|.--. .||.+ + .++|||+.. + .+-+.+.+.++..|++.
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s----~----~~l~~a~~~~~~~~~~v 79 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHN----P----ASIASVLDMKARENLPL 79 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECC----H----HHHHHHHHHHHHhCCCc
Confidence 456788888876556799999999987433 34434 2 489999864 1 12233444556667775
Q ss_pred EEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEE
Q 005237 518 ELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVV 576 (706)
Q Consensus 518 EF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVV 576 (706)
.+....++.+. +. ..=+.|+.+..++.+.. ..++.+++.+ +.|+|.-.+
T Consensus 80 ~~~~~d~~~~~-------~~-~~fD~I~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 80 RTDAYDINAAA-------LN-EDYDFIFSTVVFMFLQA--GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred eeEeccchhcc-------cc-CCCCEEEEecccccCCH--HHHHHHHHHHHHHhCCCcEE
Confidence 55443222111 11 12256766666654321 2456777775 678999863
No 8
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.04 E-value=29 Score=39.37 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+ +..+..+.++. ...+...+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS----~~~l~~A~~~~----~~~~~~v~ 317 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS----VNMISFALERA----IGRKCSVE 317 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC----HHHHHHHHHHh----hcCCCceE
Confidence 34556666543345689999999985 3445666552 389999964 22344333332 23344556
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
|....+.++ .+....=++|+.+..+..+ +. .+.+|+.+ |.|+|...+++.
T Consensus 318 ~~~~d~~~~-------~~~~~~fD~I~s~~~l~h~---~d-~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 318 FEVADCTKK-------TYPDNSFDVIYSRDTILHI---QD-KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEcCcccC-------CCCCCCEEEEEECCccccc---CC-HHHHHHHHHHHcCCCeEEEEE
Confidence 654322211 1110111344444333333 22 34555554 789999987765
No 9
>PRK08317 hypothetical protein; Provisional
Probab=88.57 E-value=26 Score=34.57 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEIL 522 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V 522 (706)
+++.+.-...-+|+|+|.|.|. |. ..++.+- +|.-++|+|+.. +..+..+.++ ....+...+|...
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~----~~~~~~a~~~----~~~~~~~~~~~~~ 76 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRS----EAMLALAKER----AAGLGPNVEFVRG 76 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCC----HHHHHHHHHH----hhCCCCceEEEec
Confidence 5566665566789999998874 33 3344332 245689999854 2223333333 1112333444432
Q ss_pred ecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe
Q 005237 523 SLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL 578 (706)
Q Consensus 523 ~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv 578 (706)
..+.+. +.-..-+.|+.+..++.+.+ ...+|+. .+.|+|.-.+++
T Consensus 77 d~~~~~-------~~~~~~D~v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 77 DADGLP-------FPDGSFDAVRSDRVLQHLED----PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred ccccCC-------CCCCCceEEEEechhhccCC----HHHHHHHHHHHhcCCcEEEE
Confidence 222111 11112245666655544322 3445554 468899987654
No 10
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.47 E-value=6 Score=42.00 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=57.2
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|.|.|. +...|+.+ + .++|||+.. + .+-+.+.+.|+..++.+++....+++..
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s----~----~ai~~~~~~~~~~~l~v~~~~~D~~~~~----- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN----Q----QSLENLQEIAEKENLNIRTGLYDINSAS----- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC----H----HHHHHHHHHHHHcCCceEEEEechhccc-----
Confidence 89999999987 33445554 2 589999864 1 2223455666777887666543322211
Q ss_pred CCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEE
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVS 577 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVl 577 (706)
+. ..=++|+.+..++.+. +..++.+|+.+ +.|+|.-+++
T Consensus 181 --~~-~~fD~I~~~~vl~~l~--~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 181 --IQ-EEYDFILSTVVLMFLN--RERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred --cc-CCccEEEEcchhhhCC--HHHHHHHHHHHHHhcCCCcEEE
Confidence 11 1124676666655332 13456777665 6889987643
No 11
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=87.32 E-value=33 Score=34.16 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEIL 522 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V 522 (706)
+++.+.-....+|+|+|.|.|. +...++.+- ++..++|+++.. +..++.+.+++... .+....+|...
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~~--~~~~~v~~~D~s----~~~~~~a~~~~~~~--~~~~~~~~~~~ 110 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKAV--GKTGEVVGLDFS----EGMLAVGREKLRDL--GLSGNVEFVQG 110 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHHc--CCCCeEEEEeCC----HHHHHHHHHhhccc--ccccCeEEEec
Confidence 3444433345789999999985 223333322 346899999864 11233333333210 02233444443
Q ss_pred ecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237 523 SLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 523 ~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
...++. +....-++|+.+..++... ..+.+|+.+ +.|+|.-++++
T Consensus 111 d~~~~~-------~~~~~~D~I~~~~~l~~~~----~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 111 DAEALP-------FPDNSFDAVTIAFGLRNVP----DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ccccCC-------CCCCCccEEEEecccccCC----CHHHHHHHHHHhccCCcEEEE
Confidence 222211 1111224665555444332 245666654 67888876654
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=87.25 E-value=38 Score=35.61 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=89.2
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+- +|.-+||||+.. +.-++.+.++....++...-..+
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S----~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS----SEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC----HHHHHHHHHHhhhhhhccCCCeE
Confidence 34444444443445689999999997 334555442 234589999964 22355555554322222222344
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEE-EeecCCCCCCCChHHHHHHH
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVV-SLDRSCDRPDFPFAHHMVHA 596 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVV-lvEqeadhns~~F~~RF~EA 596 (706)
|..-.++++ ++.-..=++|.+++.++.+. . ...+|+. .|-|+|.-.+ ++|-.. ....|...+.+
T Consensus 131 ~~~~d~~~l-------p~~~~sfD~V~~~~~l~~~~---d-~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~~~- 196 (261)
T PLN02233 131 WIEGDATDL-------PFDDCYFDAITMGYGLRNVV---D-RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSMQE- 196 (261)
T ss_pred EEEcccccC-------CCCCCCEeEEEEecccccCC---C-HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHHHH-
Confidence 443222222 12111124677776665442 2 4455555 4789998654 455442 23355555432
Q ss_pred HHHHHH-HhhhhhcCCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCccccC
Q 005237 597 LQSYSG-LLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTF 660 (706)
Q Consensus 597 L~yYsA-lFDSLDa~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pvpL 660 (706)
+|.. +.--+.......+ ..+ ++...| ++..+.+.....|+.+||+.+..
T Consensus 197 --~~~~~~~~~~~~~~~~~~---~y~--~l~~s~--------~~f~s~~el~~ll~~aGF~~~~~ 246 (261)
T PLN02233 197 --WMIDNVVVPVATGYGLAK---EYE--YLKSSI--------NEYLTGEELEKLALEAGFSSAKH 246 (261)
T ss_pred --HHHhhhhhHHHHHhCChH---HHH--HHHHHH--------HhcCCHHHHHHHHHHCCCCEEEE
Confidence 1211 0001111000011 111 122122 33356678888999999987643
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=87.08 E-value=5 Score=38.01 Aligned_cols=106 Identities=25% Similarity=0.287 Sum_probs=62.6
Q ss_pred CceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeeccccc
Q 005237 450 CNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLI 528 (706)
Q Consensus 450 ~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~ 528 (706)
.+..+|+|+|.|.|.-=-.|.+.+ .|..+||||+.. + ++-+...+.+++.+++ .+|....++++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s----~----~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDIS----E----EMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESS----H----HHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECc----H----HHHHHhhcccccccccccceEEeehhccc
Confidence 356799999999986433333311 235569999854 2 2334556677788887 777765444433
Q ss_pred ccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEee
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSLD 579 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlvE 579 (706)
.. +. ..=+.|..+..++.+.. ...+|+. .+.|+|..++++.
T Consensus 68 ~~-----~~-~~~D~I~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 68 QE-----LE-EKFDIIISNGVLHHFPD----PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp GC-----SS-TTEEEEEEESTGGGTSH----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-----cC-CCeeEEEEcCchhhccC----HHHHHHHHHHHcCCCcEEEEE
Confidence 21 11 23356666766544322 3345555 6889999877653
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=86.95 E-value=9.3 Score=38.31 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=62.1
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-E
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-F 517 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-F 517 (706)
++..|++.+.....-.|+|+|.|.|. +.-.||.+ + .+||||+.+ +..++. +.+.++..++. .
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S----~~~i~~----a~~~~~~~~~~~v 80 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN----PMSIAN----LERIKAAENLDNL 80 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC----HHHHHH----HHHHHHHcCCCcc
Confidence 35566677665555689999999987 23445554 2 389999864 112332 23334444554 4
Q ss_pred EEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEE
Q 005237 518 ELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVS 577 (706)
Q Consensus 518 EF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVl 577 (706)
++....+.++. +. ..=++|+.+..++.+. +..++.+++.+ +.|+|.-+++
T Consensus 81 ~~~~~d~~~~~-------~~-~~fD~I~~~~~~~~~~--~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 81 HTAVVDLNNLT-------FD-GEYDFILSTVVLMFLE--AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred eEEecChhhCC-------cC-CCcCEEEEecchhhCC--HHHHHHHHHHHHHHcCCCcEEE
Confidence 44333222211 11 1224666665554322 23456777665 7889998743
No 15
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.91 E-value=4 Score=43.47 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHhhc----cCceeEEEeccccccc-chHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHH
Q 005237 434 FANFTCNQALLEAFE----GCNRIHIIDFDIGYGG-QWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKH 508 (706)
Q Consensus 434 FAhftANQAILEA~e----G~~rVHIIDFgIg~G~-QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~ 508 (706)
-+++++-..||+.+. +.+.-+|+|||.|-|. =|+. .+.+- -..++|.|+.+ ..+...+++|.+
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~~------~~~~~~~vd~s-----~~~~~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVWP------SLKEYTCVDRS-----PEMLELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHhc------CceeeeeecCC-----HHHHHHHHHHHh
Confidence 456677777777776 4566799999999884 4432 22221 25688999854 234455666654
Q ss_pred HHHhcCCcEEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeecCCCCCCCC
Q 005237 509 FASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFP 588 (706)
Q Consensus 509 fA~~lgVpFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEqeadhns~~ 588 (706)
-..... ..+... .+... .....+++.|++...+..+.. ..+..+++.+..+--.++|+||.+.- .+..
T Consensus 80 ~~~~~~-~~~~~~----~~~~~----~~~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~~LVlVEpGt~-~Gf~ 147 (274)
T PF09243_consen 80 AGPNNR-NAEWRR----VLYRD----FLPFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAPVLVLVEPGTP-AGFR 147 (274)
T ss_pred cccccc-cchhhh----hhhcc----cccCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccCcEEEEcCCCh-HHHH
Confidence 322111 011111 01110 012223456666655554433 45778888884434449999999833 3434
Q ss_pred hHHHHHHHH
Q 005237 589 FAHHMVHAL 597 (706)
Q Consensus 589 F~~RF~EAL 597 (706)
.+.+.++.|
T Consensus 148 ~i~~aR~~l 156 (274)
T PF09243_consen 148 RIAEARDQL 156 (274)
T ss_pred HHHHHHHHH
Confidence 466666655
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.57 E-value=24 Score=37.23 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc
Q 005237 437 FTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP 516 (706)
Q Consensus 437 ftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp 516 (706)
+-+...|++.+.=...-+|+|+|.|.|.-- ..|+.+. ..++|+|+.. +..+..+.++... .-.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s----~~~~~~a~~~~~~-----~~~ 100 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDIC----EKMVNIAKLRNSD-----KNK 100 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECC----HHHHHHHHHHcCc-----CCc
Confidence 345677777776566678999999998732 3444433 2489999854 2223333333221 112
Q ss_pred EEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237 517 FELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 517 FEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
++|....+ .. ..+....=++|..+..+..+. ...+..+|+.+ +.|+|.-.+++
T Consensus 101 i~~~~~D~---~~----~~~~~~~FD~V~s~~~l~h~~--~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 101 IEFEANDI---LK----KDFPENTFDMIYSRDAILHLS--YADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred eEEEECCc---cc----CCCCCCCeEEEEEhhhHHhCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 44433221 11 111111124555543332221 12356777665 78999987765
No 17
>PRK06202 hypothetical protein; Provisional
Probab=85.33 E-value=14 Score=37.75 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=57.9
Q ss_pred hccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccc
Q 005237 447 FEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLET 526 (706)
Q Consensus 447 ~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~les 526 (706)
+...+...|+|+|.|.|. +...|-.... ...|..+||||+... .-++.+.++. +..++.+. ....+.
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~--~~g~~~~v~gvD~s~----~~l~~a~~~~----~~~~~~~~--~~~~~~ 122 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWAR--RDGLRLEVTAIDPDP----RAVAFARANP----RRPGVTFR--QAVSDE 122 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHH--hCCCCcEEEEEcCCH----HHHHHHHhcc----ccCCCeEE--EEeccc
Confidence 333556789999999996 3333322221 123467999999641 1233333221 12244443 333333
Q ss_pred ccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEee
Q 005237 527 LISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLD 579 (706)
Q Consensus 527 L~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvE 579 (706)
+.. .-..=++|+.|..++.+.. ..+..+|+.++++.-.++++.+
T Consensus 123 l~~-------~~~~fD~V~~~~~lhh~~d--~~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 123 LVA-------EGERFDVVTSNHFLHHLDD--AEVVRLLADSAALARRLVLHND 166 (232)
T ss_pred ccc-------cCCCccEEEECCeeecCCh--HHHHHHHHHHHHhcCeeEEEec
Confidence 321 1112358888877765533 1245688777655545555443
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=83.01 E-value=3.6 Score=42.83 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=58.9
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEE
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEI 521 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~ 521 (706)
.+++.+...+..+|+|.+.|.|.-+.. |+++-+ |.-+||++|.+ +.-|+.+.+++.+.... ..+|..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s----~~ML~~a~~k~~~~~~~---~i~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDIS----PGMLEVARKKLKREGLQ---NIEFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-----HHHHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCC----HHHHHHHHHHHHhhCCC---CeeEEE
Confidence 455666666677999999999964443 443322 34599999964 22356666666654432 444443
Q ss_pred eecccccccCCCCCCCCCCC--ceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEE-EeecCCCCCCCChHHHHHHHHH
Q 005237 522 LSLETLISASWPLPLQGLEN--DVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVV-SLDRSCDRPDFPFAHHMVHALQ 598 (706)
Q Consensus 522 V~lesL~~~~~~l~Lr~~~d--EaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVV-lvEqeadhns~~F~~RF~EAL~ 598 (706)
-..+++ ++ .++ ++|.+-+.++ +.+.....+=+..|-|+|.-.+ ++|-.-- ..+++. ..+.
T Consensus 105 ~da~~l-------p~--~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile~~~p--~~~~~~---~~~~ 167 (233)
T PF01209_consen 105 GDAEDL-------PF--PDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILEFSKP--RNPLLR---ALYK 167 (233)
T ss_dssp -BTTB---------S---TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEEEEB---SSHHHH---HHHH
T ss_pred cCHHHh-------cC--CCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEeeccCC--CCchhh---ceee
Confidence 222222 12 233 2444343333 3343333444456889998744 4554321 122333 3333
Q ss_pred HHHHHhhhhhcCCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCccccCCh
Q 005237 599 SYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSN 662 (706)
Q Consensus 599 yYsAlFDSLDa~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pvpLS~ 662 (706)
+|...+-=+=+.....+ .-+..+|.+-|++- -..+.-.++|+++||+.+....
T Consensus 168 ~y~~~ilP~~g~l~~~~---~~~Y~yL~~Si~~f--------~~~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGD---REAYRYLPESIRRF--------PSPEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp H---------------------------------------------------------------
T ss_pred eeecccccccccccccc---cccccccccccccc--------cccccccccccccccccccccc
Confidence 44442211111111111 11223444444433 3345666778999998776544
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=81.39 E-value=13 Score=38.54 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=63.0
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+- |..++|||+.. + ...+.|+..++.| .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s----~--------~~~~~a~~~~~~~--~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS----P--------EMVAAARERGVDA--R 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC----H--------HHHHHHHhcCCcE--E
Confidence 356676665556789999999984 456677653 34689999864 1 2223344445543 3
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEeec
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSLDR 580 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlvEq 580 (706)
...++++.. ...=++|+.|..++.+. . .+.+|+. .+.|+|.-.+++..
T Consensus 78 ~~d~~~~~~--------~~~fD~v~~~~~l~~~~---d-~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 78 TGDVRDWKP--------KPDTDVVVSNAALQWVP---E-HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EcChhhCCC--------CCCceEEEEehhhhhCC---C-HHHHHHHHHHhCCCCcEEEEEc
Confidence 222222211 11235788887776542 2 3455555 47899998777653
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=79.06 E-value=23 Score=36.45 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.. +.-++.+.+++ -..+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s----~~~i~~a~~~~--------~~~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSS----PAMLAEARSRL--------PDCQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHhC--------CCCe
Confidence 35667777765566789999999983 345566553 34689999864 11233333321 1234
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
|....++++.. ...=++|+.|..++.+. . ...+|+.+ +.|+|...+++.-
T Consensus 80 ~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~---d-~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVEADIASWQP--------PQALDLIFANASLQWLP---D-HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEECchhccCC--------CCCccEEEEccChhhCC---C-HHHHHHHHHHhcCCCcEEEEEC
Confidence 43322222211 01225777777665442 2 33455554 7889999887753
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=78.19 E-value=30 Score=32.04 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=51.3
Q ss_pred cCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccc
Q 005237 449 GCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLI 528 (706)
Q Consensus 449 G~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~ 528 (706)
..+.-.|+|+|-|.| .| ...|+.+ |. ++||++.. +..+.. ..+.+.-... ....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~----~~~~~~-----------~~~~~~~~~~--~~~~ 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS----PQMIEK-----------RNVVFDNFDA--QDPP 73 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS----HHHHHH-----------TTSEEEEEEC--HTHH
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC----HHHHhh-----------hhhhhhhhhh--hhhh
Confidence 456679999999999 34 4555544 22 99999864 111211 2232222211 1110
Q ss_pred ccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe-ecC
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL-DRS 581 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv-Eqe 581 (706)
. .-..=++|..+..++.+.+ ...+|+.| +.|+|.-++++ +..
T Consensus 74 ~-------~~~~fD~i~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 74 F-------PDGSFDLIICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp C-------HSSSEEEEEEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred c-------cccchhhHhhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 0 0011246666666665542 45677666 56889776654 443
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=77.69 E-value=1e+02 Score=33.74 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=52.9
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC--cEEEEEeeccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI--PFELEILSLETLI 528 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV--pFEF~~V~lesL~ 528 (706)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.. +..++ +..+.++..|+ ..+|..-...++
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s----~~~i~----~a~~~~~~~g~~~~v~~~~~D~~~~- 180 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS----PVQAA----RANALAAAQGLSDKVSFQVADALNQ- 180 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC----HHHHH----HHHHHHHhcCCCCceEEEEcCcccC-
Confidence 34579999999985 4456665542 389999854 11222 33334455555 355544222111
Q ss_pred ccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL 578 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv 578 (706)
.+....=++|+.+..++++ +. ...+|+. .|-|+|.-.+++
T Consensus 181 ------~~~~~~FD~V~s~~~~~h~---~d-~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 181 ------PFEDGQFDLVWSMESGEHM---PD-KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ------CCCCCCccEEEECCchhcc---CC-HHHHHHHHHHHcCCCcEEEE
Confidence 1211112455555444433 22 4455554 578999865554
No 23
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=75.33 E-value=57 Score=31.81 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
.|+|+|.|.|. +...++.+ ++ ++|+|+.. +..++.+.+++. ..++..+|... +..+.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s----~~~~~~a~~~~~----~~~~~~~~~~~--d~~~~---- 78 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDIN----PFAVKELRENAK----LNNVGLDVVMT--DLFKG---- 78 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECC----HHHHHHHHHHHH----HcCCceEEEEc--ccccc----
Confidence 49999999984 45556654 22 89999853 233455555553 34554444332 21111
Q ss_pred CCCCCCCCceEEEecCcccccCCC--------------C---CHHHHHHHH-HhcCCcEEEEeecC
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYP--------------A---TFPLVLRFV-KQLQPKIVVSLDRS 581 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p--------------~---~~~~vL~~I-RsL~PkVVVlvEqe 581 (706)
+. ..-+.|+.|.+++...... . ..+.+|+.+ +-|+|.-.+++...
T Consensus 79 --~~-~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 79 --VR-GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred --cC-CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 10 1235777887764332100 0 023455554 68888776655443
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=75.27 E-value=4.3 Score=35.73 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=48.9
Q ss_pred EEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCCC
Q 005237 455 IIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPL 534 (706)
Q Consensus 455 IIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~l 534 (706)
|+|+|.|.|.-=..|.+.+ ..+ |..++|+|+.. +..|..+.++ .++.+++.+|..-.+.++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~~--~~~~~~gvD~s----~~~l~~~~~~----~~~~~~~~~~~~~D~~~l~~----- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DAG--PSSRVIGVDIS----PEMLELAKKR----FSEDGPKVRFVQADARDLPF----- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-----HHHHHHHHHH----SHHTTTTSEEEESCTTCHHH-----
T ss_pred CEEeecCCcHHHHHHHHHh--hhc--ccceEEEEECC----HHHHHHHHHh----chhcCCceEEEECCHhHCcc-----
Confidence 7999999998777777665 111 56999999854 2234433333 33356777775433333321
Q ss_pred CCCCCCCceEEE-ecCcccccCCCCCHHHHHHHHH-hcCC
Q 005237 535 PLQGLENDVTAV-NLPIGVFSNYPATFPLVLRFVK-QLQP 572 (706)
Q Consensus 535 ~Lr~~~dEaLAV-N~~~~~l~~~p~~~~~vL~~IR-sL~P 572 (706)
....=++|+. ++.++.+.. ..+..+|+.+. -|+|
T Consensus 64 --~~~~~D~v~~~~~~~~~~~~--~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 64 --SDGKFDLVVCSGLSLHHLSP--EELEALLRRIARLLRP 99 (101)
T ss_dssp --HSSSEEEEEE-TTGGGGSSH--HHHHHHHHHHHHTEEE
T ss_pred --cCCCeeEEEEcCCccCCCCH--HHHHHHHHHHHHHhCC
Confidence 1111134444 343554432 34567777664 3444
No 25
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=75.16 E-value=94 Score=31.41 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=53.3
Q ss_pred cCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccc
Q 005237 449 GCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLI 528 (706)
Q Consensus 449 G~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~ 528 (706)
..+..+|+|+|.|.|. +...++.+ + .++|+|+.. +..+..+.+++ ...++..+|.....+++.
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s----~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~ 108 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS----EENIEVARLHA----LESGLKIDYRQTTAEELA 108 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC----HHHHHHHHHHH----HHcCCceEEEecCHHHhh
Confidence 3456789999998876 23344443 2 479999854 12233333333 334555555544333221
Q ss_pred ccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
. .....-+.|+.+..++.. + ....+|+.+ +.|+|.-.+++.
T Consensus 109 ~------~~~~~fD~Ii~~~~l~~~---~-~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 109 A------EHPGQFDVVTCMEMLEHV---P-DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred h------hcCCCccEEEEhhHhhcc---C-CHHHHHHHHHHHcCCCcEEEEE
Confidence 1 011122455554433322 2 234565554 678898766654
No 26
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=73.86 E-value=52 Score=33.64 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=59.2
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccccC
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLISAS 531 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~~~ 531 (706)
-.|+|++.|.|. --|.+|+ |. .-+||+|+.. +..++.+.+++ +.+|+. .+|.. .+ +...
T Consensus 55 ~~vLDl~~GsG~---l~l~~ls-r~----a~~V~~vE~~----~~a~~~a~~Nl----~~~~~~~v~~~~--~D-~~~~- 114 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALS-RY----AAGATLLEMD----RAVAQQLIKNL----ATLKAGNARVVN--TN-ALSF- 114 (199)
T ss_pred CEEEEcCCCccH---HHHHHHH-cC----CCEEEEEECC----HHHHHHHHHHH----HHhCCCcEEEEE--ch-HHHH-
Confidence 479999999883 2234555 32 1389999743 33344444443 334543 33322 11 1110
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHh---cCCcEEEEeecCCCC
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQ---LQPKIVVSLDRSCDR 584 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRs---L~PkVVVlvEqeadh 584 (706)
+......-+.|++|=|+.. +..+.+++.|.. |+|+-+|.+|...+.
T Consensus 115 --l~~~~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 115 --LAQPGTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred --HhhcCCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 0001112368899987531 335678888877 699999999976543
No 27
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=73.06 E-value=49 Score=36.59 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=64.9
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+.. +..++.+.+++.+ .++..++.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis----~~Al~~A~~nl~~----n~l~~~~~ 250 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS----AAALESSRATLAA----NGLEGEVF 250 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC----HHHHHHHHHHHHH----cCCCCEEE
Confidence 445555543323369999999997 344555442 35789999854 3345555555543 45655554
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCC-CCCHHHHHHH-HHhcCCcEEEEee
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNY-PATFPLVLRF-VKQLQPKIVVSLD 579 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~-p~~~~~vL~~-IRsL~PkVVVlvE 579 (706)
.. +-++. + ...=+.|+.|.+||..... ......+++. .+.|+|.-.+.+.
T Consensus 251 ~~--D~~~~------~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 251 AS--NVFSD------I-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred Ec--ccccc------c-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 32 21111 1 1133689999998743211 1223455555 4679998876553
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=72.59 E-value=37 Score=35.22 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc--EE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP--FE 518 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp--FE 518 (706)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|+|+.. +.-++.+.++ ++..|+. ++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s----~~~l~~a~~~----~~~~g~~~~v~ 96 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS----AEMIQRAKQA----AEAKGVSDNMQ 96 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC----HHHHHHHHHH----HHhcCCccceE
Confidence 34666665 344699999999994 45566654 2 489999854 2234433333 4445553 34
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL 578 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv 578 (706)
|..-.++++.. .....=++|+.+..++.+. . ...+|+. .+-|+|.-.+++
T Consensus 97 ~~~~d~~~l~~------~~~~~fD~V~~~~vl~~~~---~-~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIHCAAQDIAQ------HLETPVDLILFHAVLEWVA---D-PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEcCHHHHhh------hcCCCCCEEEehhHHHhhC---C-HHHHHHHHHHHcCCCeEEEE
Confidence 43322333321 1111224666665554332 2 2344544 578999988765
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=71.36 E-value=36 Score=38.53 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=58.9
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..|++.+.....-+|+|+|.|.|.-- ..|+.+. -+||||+.. +..++...+ ..+ ..-..+|.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s----~~~l~~a~~----~~~-~~~~i~~~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFI----ESVIKKNES----ING-HYKNVKFM 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCC----HHHHHHHHH----Hhc-cCCceEEE
Confidence 45666666544458999999999543 4455442 178999853 112322111 111 11123333
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
...+++. . +.+....=+.|+.++.++.+.. ..+..+|+.+ |.|+|..+++...
T Consensus 89 ~~d~~~~---~--~~~~~~~fD~I~~~~~l~~l~~--~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 89 CADVTSP---D--LNISDGSVDLIFSNWLLMYLSD--KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred Eeccccc---c--cCCCCCCEEEEehhhhHHhCCH--HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3222111 1 1121112257777776664432 2356677666 5589999877643
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=71.23 E-value=72 Score=31.85 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=52.5
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccccC
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLISAS 531 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~~~ 531 (706)
-+|+|+|.|.|.- ++. |+.+. |..++|+|+.. +..++ .+.+.+++.|++ ++|..-.++++..
T Consensus 44 ~~vLDiGcGtG~~--s~~--la~~~---~~~~V~~iD~s----~~~~~----~a~~~~~~~~~~~i~~i~~d~~~~~~-- 106 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIP--LAIAR---PELKLTLLESN----HKKVA----FLREVKAELGLNNVEIVNGRAEDFQH-- 106 (181)
T ss_pred CeEEEecCCCCcc--HHH--HHHHC---CCCeEEEEeCc----HHHHH----HHHHHHHHhCCCCeEEEecchhhccc--
Confidence 4899999999832 221 12111 34689999854 11222 333445556664 5554433333211
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
...=++|+.|. ++ ..+.+++.+ +.|+|.-++++..
T Consensus 107 ------~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 ------EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ------cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 01224666664 21 245666664 5589999988764
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=70.76 E-value=22 Score=37.58 Aligned_cols=44 Identities=23% Similarity=0.125 Sum_probs=31.1
Q ss_pred ccCceeEEEecccccccchHHHHHHHhcCCC--CCCcEEEEEecCC
Q 005237 448 EGCNRIHIIDFDIGYGGQWASLMQELVFRSE--GPPSLKITAFTSS 491 (706)
Q Consensus 448 eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~g--GPPsLRITgI~~p 491 (706)
...+.++|.|.|.+.|--.-+|--.|++.-. ..+..+|||+|..
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 3456799999999999876666555554321 2347899999965
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=70.18 E-value=45 Score=33.56 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhhc--cCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 005237 434 FANFTCNQALLEAFE--GCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFAS 511 (706)
Q Consensus 434 FAhftANQAILEA~e--G~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~ 511 (706)
.++-.....+++.+. -.+.-+|+|+|.|.|. +...|+.+. .+||||+.. +..+..+.+++.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s----~~~i~~a~~~~~---- 98 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS----EQMVQMARNRAQ---- 98 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC----HHHHHHHHHHHH----
Confidence 445566677777776 2456799999999985 555666542 389999854 223444444443
Q ss_pred hcCC--cEEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHH-hcCCcEEEEe
Q 005237 512 EINI--PFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVK-QLQPKIVVSL 578 (706)
Q Consensus 512 ~lgV--pFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IR-sL~PkVVVlv 578 (706)
..++ .++|....++++. ..-++|+.+..+..+.. ..+..+++.+. .++|.+++.+
T Consensus 99 ~~~~~~~i~~~~~d~~~~~----------~~fD~ii~~~~l~~~~~--~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 99 GRDVAGNVEFEVNDLLSLC----------GEFDIVVCMDVLIHYPA--SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hcCCCCceEEEECChhhCC----------CCcCEEEEhhHHHhCCH--HHHHHHHHHHHHHhCCCEEEEE
Confidence 2333 4555543332221 12245544433322211 22456666664 4566666554
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=69.62 E-value=12 Score=32.86 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=56.1
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|.|.|.- ...|+++ -|..+||||+.. +..++.+.+++.+. ..+-..+|..-.+ .... .
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~---~~~~~v~gvD~s----~~~~~~a~~~~~~~--~~~~~i~~~~~d~-~~~~---~ 66 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARL---FPGARVVGVDIS----PEMLEIARERAAEE--GLSDRITFVQGDA-EFDP---D 66 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHH---HTTSEEEEEESS----HHHHHHHHHHHHHT--TTTTTEEEEESCC-HGGT---T
T ss_pred EEEEEcCcCCHH----HHHHHhc---CCCCEEEEEeCC----HHHHHHHHHHHHhc--CCCCCeEEEECcc-ccCc---c
Confidence 689999999853 3344431 135789999853 33466666666332 2334455544222 0111 0
Q ss_pred CCCCCCCCceEEEec-CcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 534 LPLQGLENDVTAVNL-PIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~-~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
. ..+=++|..+. .++.+... ..+..+|+.+ +.|+|.-+++++
T Consensus 67 --~-~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 67 --F-LEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp --T-SSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --c-CCCCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 11234666665 22212111 2345677766 588999888764
No 34
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=65.87 E-value=1.5e+02 Score=29.60 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC-cEEEEEeecccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI-PFELEILSLETLIS 529 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV-pFEF~~V~lesL~~ 529 (706)
+...|+|+|.+.|. +...++.. + .++|+++.. +..+..+.+++ ...++ .+.|.....+++..
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~-~----~~v~~iD~s----~~~~~~a~~~~----~~~~~~~~~~~~~d~~~~~~ 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL-G----ANVTGIDAS----EENIEVAKLHA----KKDPLLKIEYRCTSVEDLAE 107 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc-C----CeEEEEeCC----HHHHHHHHHHH----HHcCCCceEEEeCCHHHhhc
Confidence 36789999998884 33344432 2 248999853 22233333333 23445 35554432222211
Q ss_pred cCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 530 ASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 530 ~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
.. ...-++|+.+..++.+. ....+|+.+ +.|+|.-++++.
T Consensus 108 -----~~-~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 108 -----KG-AKSFDVVTCMEVLEHVP----DPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred -----CC-CCCccEEEehhHHHhCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 00 11235666665444332 245666665 678898776653
No 35
>PRK05785 hypothetical protein; Provisional
Probab=64.49 E-value=1.4e+02 Score=30.88 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=22.1
Q ss_pred eeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 452 RIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 452 rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
.-.|+|+|.|.|.- ...|+.+.+ .+||||+..
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S 83 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA 83 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC
Confidence 34799999999943 344554431 489999964
No 36
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=63.94 E-value=87 Score=30.38 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
+.|++.+.-...=+|+|+|.|.|. |...|+.| + -++|+|+.. +..++.+.+++.. . -.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~----~~~~~~~~~~~~~----~-~~v~ii 64 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID----PRLAPRLREKFAA----A-DNLTVI 64 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC----HHHHHHHHHHhcc----C-CCEEEE
Confidence 346666653334489999999886 55556655 2 389999854 2233444444321 1 123332
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHh--cCCcEEEEeecC
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQ--LQPKIVVSLDRS 581 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRs--L~PkVVVlvEqe 581 (706)
.-.+.++. +....-..|+-|.+++.. .+.+.+.++. +.+..+++++.|
T Consensus 65 ~~D~~~~~-------~~~~~~d~vi~n~Py~~~------~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 65 HGDALKFD-------LPKLQPYKVVGNLPYNIS------TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECchhcCC-------ccccCCCEEEECCCcccH------HHHHHHHHhcCCCcceEEEEEEHH
Confidence 21111111 111113577778876521 1233333433 347778888776
No 37
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=63.42 E-value=76 Score=35.59 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=55.8
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..|++.+.=...=+|+|+|.|.|. +...++.+.+ .+||||+.. +..++.+.++. + ++.++|.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS----~~~l~~A~~~~----~--~l~v~~~ 218 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS----AEQQKLAQERC----A--GLPVEIR 218 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC----HHHHHHHHHHh----c--cCeEEEE
Confidence 445555543444589999987775 4455565543 489999854 22344444443 2 3334443
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
.....++ . ..=+.|+.+..++.+.. ...+.+++.+ +-|+|.-.+++
T Consensus 219 ~~D~~~l---------~-~~fD~Ivs~~~~ehvg~--~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 219 LQDYRDL---------N-GQFDRIVSVGMFEHVGP--KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred ECchhhc---------C-CCCCEEEEeCchhhCCh--HHHHHHHHHHHHHcCCCcEEEE
Confidence 3221111 1 01134444433433211 2345666655 67899987765
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=62.71 E-value=1.5e+02 Score=29.98 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=55.9
Q ss_pred eeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeeccccccc
Q 005237 452 RIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLISA 530 (706)
Q Consensus 452 rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~~ 530 (706)
.-.|+|+|.|.|.. ++ .++.+. |..++|+|+.. +..+. ...+.++..+++ ++|..-..+++..
T Consensus 46 g~~VLDiGcGtG~~--al--~la~~~---~~~~V~giD~s----~~~l~----~A~~~~~~~~l~~i~~~~~d~~~~~~- 109 (187)
T PRK00107 46 GERVLDVGSGAGFP--GI--PLAIAR---PELKVTLVDSL----GKKIA----FLREVAAELGLKNVTVVHGRAEEFGQ- 109 (187)
T ss_pred CCeEEEEcCCCCHH--HH--HHHHHC---CCCeEEEEeCc----HHHHH----HHHHHHHHcCCCCEEEEeccHhhCCC-
Confidence 34699999999842 22 222221 34699999864 11233 334445556764 5555433333211
Q ss_pred CCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 531 SWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 531 ~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
...-++|..|.. ..++.+++.+ +.|+|.-.+++..
T Consensus 110 -------~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 -------EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -------CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 112356766641 2356777765 7999999888764
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=62.33 E-value=68 Score=32.65 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
.|+|+|.|.|.--..| +.+- |..++|||+.. +..++.+.+++ -++ ++....+ .++
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS----~~~l~~A~~~~------~~~--~~~~~d~--~~~---- 100 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEIN----EYAVEKAKAYL------PNI--NIIQGSL--FDP---- 100 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEECC----HHHHHHHHhhC------CCC--cEEEeec--cCC----
Confidence 5999999999554444 3321 24689999854 22344333322 122 2222111 111
Q ss_pred CCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeecC
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRS 581 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEqe 581 (706)
+.-..=++|+.|..++.+. |..+..+++.+.+..=+.++++|..
T Consensus 101 --~~~~sfD~V~~~~vL~hl~--p~~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 101 --FKDNFFDLVLTKGVLIHIN--PDNLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred --CCCCCEEEEEECChhhhCC--HHHHHHHHHHHHhhcCcEEEEEEee
Confidence 1111124666666655442 4456788888877776778888764
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=60.91 E-value=1.3e+02 Score=29.85 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
.|.+.+... -+|+|+|.|.|. ++..|+.+. ..+++||+..
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~----~~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEK----QVRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhcc----CCcEEEEeCC
Confidence 345555432 379999999985 456676543 2356899753
No 41
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=60.81 E-value=68 Score=36.21 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=59.3
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|.|.|. +--.|+.+. |..+||+|+.+ +..++.+.+++......-...++|.. .+.++.
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S----~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~---- 293 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES----PMAVASSRLNVETNMPEALDRCEFMI--NNALSG---- 293 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC----HHHHHHHHHHHHHcCcccCceEEEEE--cccccc----
Confidence 79999999997 334555543 56899999854 33466666666433211011344432 111211
Q ss_pred CCCCCCCCceEEEecCcccccCCCC-CHHHHHH-HHHhcCCcEEEEeec
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPA-TFPLVLR-FVKQLQPKIVVSLDR 580 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~-~~~~vL~-~IRsL~PkVVVlvEq 580 (706)
+....=+.|+.|-|+|....... ....+++ .-+.|+|.-.+.++-
T Consensus 294 --~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 294 --VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred --CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 11112368888988874322111 1233444 346889998777663
No 42
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=60.65 E-value=80 Score=32.29 Aligned_cols=108 Identities=21% Similarity=0.237 Sum_probs=58.1
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..++++..=.+.-+|||+|-|.|. +..+|+++. |.||+|.++.|.. ++.+.+ .=..+|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~v-----~~~~~~---------~~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPEV-----IEQAKE---------ADRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HHH-----HCCHHH---------TTTEEEE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHhh-----hhcccc---------ccccccc
Confidence 345555554444589999999983 344444443 6889999997621 111111 2234444
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCc---EEEEeecC
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPK---IVVSLDRS 581 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~Pk---VVVlvEqe 581 (706)
.-.+ +++ +.. .+++.+.-.+|.... .....+|+.+ ++|+|. .++++|.=
T Consensus 149 ~gd~--f~~------~P~--~D~~~l~~vLh~~~d--~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 149 PGDF--FDP------LPV--ADVYLLRHVLHDWSD--EDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp ES-T--TTC------CSS--ESEEEEESSGGGS-H--HHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cccH--Hhh------hcc--ccceeeehhhhhcch--HHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 4221 221 222 457777666665432 2345677776 578876 55566654
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=60.31 E-value=60 Score=32.16 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=56.6
Q ss_pred HHHHHHhhcc---CceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc
Q 005237 440 NQALLEAFEG---CNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP 516 (706)
Q Consensus 440 NQAILEA~eG---~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp 516 (706)
...|++.+.. .+..+|+|+|.|.|.-. ..|+.+- |..++|+|+.. +..+..+.+++. -.
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~----~~l~~~~---~~~~~~~~D~~----~~~~~~~~~~~~-------~~ 81 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLT----RALLKRF---PQAEFIALDIS----AGMLAQAKTKLS-------EN 81 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHH----HHHHHhC---CCCcEEEEeCh----HHHHHHHHHhcC-------CC
Confidence 3344444442 33468999999999633 3333331 45679999853 112333333222 12
Q ss_pred EEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 517 FELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 517 FEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
++|....++++. +.-..-++|+.+..++.+. ....+|+.+ +.|+|.-++++.
T Consensus 82 ~~~~~~d~~~~~-------~~~~~fD~vi~~~~l~~~~----~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 82 VQFICGDAEKLP-------LEDSSFDLIVSNLALQWCD----DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CeEEecchhhCC-------CCCCceeEEEEhhhhhhcc----CHHHHHHHHHHHcCCCcEEEEE
Confidence 333322222111 1111225666666555432 245666666 578998877764
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=59.86 E-value=1.4e+02 Score=29.74 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=49.4
Q ss_pred CceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC--cEEEEEeecccc
Q 005237 450 CNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI--PFELEILSLETL 527 (706)
Q Consensus 450 ~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV--pFEF~~V~lesL 527 (706)
.+.-.|+|+|.|.|.- ...|+.+ + .++|+|+.. +.-++.+.+++ ...++ ..+|.... +
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s----~~~i~~a~~~~----~~~~~~~~i~~~~~d---~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS----PQMVEEARERA----PEAGLAGNITFEVGD---L 121 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC----HHHHHHHHHHH----HhcCCccCcEEEEcC---c
Confidence 3456899999998853 3445543 2 349999864 22344444443 33344 34444422 2
Q ss_pred cccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEE
Q 005237 528 ISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVS 577 (706)
Q Consensus 528 ~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVl 577 (706)
+.. . ..=+.|+.+..++.+.. .....+++.++++.+..+++
T Consensus 122 ~~~------~-~~fD~v~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 122 ESL------L-GRFDTVVCLDVLIHYPQ--EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhc------c-CCcCEEEEcchhhcCCH--HHHHHHHHHHHhhcCCeEEE
Confidence 210 0 11245555544433321 23567777776554444333
No 45
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=59.32 E-value=77 Score=30.10 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=27.9
Q ss_pred hccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 447 FEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 447 ~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
-...+.++|||||-|.|.==..|-..|... .+.++|++|+..
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~ 62 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCN 62 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECC
Confidence 445789999999999885222222222212 278999999864
No 46
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=59.14 E-value=1.3e+02 Score=32.63 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=58.8
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccccC
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLISAS 531 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~~~ 531 (706)
-+|+|++-|.|. +--.||.+ + -+++||+.. +..++.+.++ |+..|++ .+|..-.++++...
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s----~~av~~A~~n----~~~~~l~~v~~~~~D~~~~~~~- 236 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIEIS----AEAIACAKQS----AAELGLTNVQFQALDSTQFATA- 236 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCC----HHHHHHHHHH----HHHcCCCceEEEEcCHHHHHHh-
Confidence 579999999985 33445543 2 279999854 2234444333 4555664 66655433332210
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeec
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDR 580 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEq 580 (706)
.. ..-++|++|-|-. +.-+.+++.|..++|+.+|.+.-
T Consensus 237 ----~~-~~~D~Vv~dPPr~------G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 237 ----QG-EVPDLVLVNPPRR------GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred ----cC-CCCeEEEECCCCC------CccHHHHHHHHHcCCCeEEEEEC
Confidence 10 1236888885521 22357888899999998887754
No 47
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=58.87 E-value=96 Score=33.35 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=62.9
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEIL 522 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V 522 (706)
|.+++. ....|||+|.|.|.-=..|++++.. ..++|+|+.+ +.-|+.+.++|.+- .-++.+++ +
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS----~~mL~~a~~~l~~~--~p~~~v~~--i 120 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS----ADALKESAAALAAD--YPQLEVHG--I 120 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC----HHHHHHHHHHHHhh--CCCceEEE--E
Confidence 444453 2357999999999777778887743 4789999865 22466677776541 12344443 3
Q ss_pred ecccccccCCCCCCCCCCCceEEEec--CcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 523 SLETLISASWPLPLQGLENDVTAVNL--PIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 523 ~lesL~~~~~~l~Lr~~~dEaLAVN~--~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
..+-.+...+. -.......+++.+ .++.+. +.....+|+.+ +.|+|.-.+++.-
T Consensus 121 ~gD~~~~~~~~--~~~~~~~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 121 CADFTQPLALP--PEPAAGRRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEcccchhhhh--cccccCCeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 22111111110 0111112444432 233221 23345678877 5789987766543
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=57.60 E-value=1.3e+02 Score=30.53 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=42.0
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLIS 529 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~ 529 (706)
+..+|+|+|.|.|. +.-.++.+. |..++|+|+.. +..++.+. +.++..++. ++|.. .+-++.
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~----~~~~~~a~----~~~~~~~~~~~~~~~--~d~~~~ 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDIS----PEALAVAR----KNAARLGLDNVTFLQ--SDWFEP 149 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHH----HHHHHcCCCeEEEEE--Cchhcc
Confidence 34689999999983 344444432 35689999853 22333333 334455665 44433 221221
Q ss_pred cCCCCCCCCCCCceEEEecCcc
Q 005237 530 ASWPLPLQGLENDVTAVNLPIG 551 (706)
Q Consensus 530 ~~~~l~Lr~~~dEaLAVN~~~~ 551 (706)
+....-+.|+.|.|+.
T Consensus 150 ------~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 150 ------LPGGKFDLIVSNPPYI 165 (251)
T ss_pred ------CcCCceeEEEECCCCC
Confidence 1111236888887754
No 49
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=54.69 E-value=1.6e+02 Score=32.39 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHH-hc-CCcEEEEEeeccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFAS-EI-NIPFELEILSLETLI 528 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~-~l-gVpFEF~~V~lesL~ 528 (706)
+...|+|+|.|.|. +...|+.+ + .+||||+.. +.-|+.+.++..+.-. .. +...+|....+++++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S----~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS----AAMVAEAERRAKEALAALPPEVLPKFEANDLESLS 210 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC----HHHHHHHHHHHHhcccccccccceEEEEcchhhcC
Confidence 45689999999886 44556544 2 489999864 2235555555432100 01 234555543332221
Q ss_pred ccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEe
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSL 578 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlv 578 (706)
. .=++|+.+..++++.. .....+++.++.+.++.+++.
T Consensus 211 ~----------~fD~Vv~~~vL~H~p~--~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 211 G----------KYDTVTCLDVLIHYPQ--DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred C----------CcCEEEEcCEEEecCH--HHHHHHHHHHHhhcCCEEEEE
Confidence 0 1134443333332211 234567888888888877774
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=54.26 E-value=1.3e+02 Score=30.45 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=64.2
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC-cEEEEEeec-cccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI-PFELEILSL-ETLI 528 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV-pFEF~~V~l-esL~ 528 (706)
+.-.|+|+|.|.|.-...|.+ +. |.-+||+|+.. +..++.+.+++ +..++ .++|..-.+ +.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s----~~~i~~a~~~~----~~~~~~~v~~~~~d~~~~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVH----EPGVGKALKKI----EEEGLTNLRLLCGDAVEVLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEec----hHHHHHHHHHH----HHcCCCCEEEEecCHHHHHH
Confidence 446799999999876554433 31 35689999864 22344333333 33344 355544333 3222
Q ss_pred ccCCCCCCCCCCCceEEEecCccccc---C-CCCCHHHHHHHH-HhcCCcEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 005237 529 SASWPLPLQGLENDVTAVNLPIGVFS---N-YPATFPLVLRFV-KQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYS 601 (706)
Q Consensus 529 ~~~~~l~Lr~~~dEaLAVN~~~~~l~---~-~p~~~~~vL~~I-RsL~PkVVVlvEqeadhns~~F~~RF~EAL~yYs 601 (706)
.. +....=+.|++|++..... . .....+.+|+.+ +.|+|.-++++--+ ...+...+.+.+.-|.
T Consensus 105 ~~-----~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~~~~~~~~~~g 173 (202)
T PRK00121 105 DM-----FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAEYMLEVLSAEG 173 (202)
T ss_pred HH-----cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHHHHHHHHHhCc
Confidence 10 1111124677776432110 0 001135677776 58999887765322 2234444444444433
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=53.54 E-value=1e+02 Score=30.92 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=51.5
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|.|.|. +...++.+. |..++|||+.. +..+..+.++ ++..|+.-..+.+..+ +....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s----~~~~~~a~~~----~~~~gl~~~i~~~~~d-~~~~~-- 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS----PEQAEVGRER----IRALGLQGRIRIFYRD-SAKDP-- 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHH----HHhcCCCcceEEEecc-cccCC--
Confidence 68999988875 344555543 24689999863 2223333333 3344554333333221 11110
Q ss_pred CCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
+. ..-+.|+.+..++.+. ..+.+|+.+ +.|+|.-.+++
T Consensus 64 --~~-~~fD~I~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 64 --FP-DTYDLVFGFEVIHHIK----DKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred --CC-CCCCEeehHHHHHhCC----CHHHHHHHHHHHcCCCCEEEE
Confidence 11 1123554444444332 256777777 56899987664
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=53.46 E-value=1.7e+02 Score=30.07 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
.-..+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|+++..
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 34555666654444579999999984 55666653 2 479999854
No 53
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=53.17 E-value=1.7e+02 Score=32.71 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=57.9
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC-cEEEEEeecccccccCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI-PFELEILSLETLISASW 532 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV-pFEF~~V~lesL~~~~~ 532 (706)
+|+|++-|.|. +--.||.+ + -+++||+.. +..++.+.++ |+..|+ ..+|..-.++++...
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~----~~av~~a~~N----~~~~~~~~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIE----SEAIACAQQS----AQMLGLDNLSFAALDSAKFATA-- 296 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECC----HHHHHHHHHH----HHHcCCCcEEEEECCHHHHHHh--
Confidence 68999998883 23344432 2 279999843 3345555544 344566 355544333222111
Q ss_pred CCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeec
Q 005237 533 PLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDR 580 (706)
Q Consensus 533 ~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEq 580 (706)
+. ..-++|++|=|.. +.-+.++..|..++|+-+|.++-
T Consensus 297 ---~~-~~~D~vi~DPPr~------G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 297 ---QM-SAPELVLVNPPRR------GIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred ---cC-CCCCEEEECCCCC------CCcHHHHHHHHhcCCCeEEEEEe
Confidence 11 1236888996632 33468889999999988888764
No 54
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=52.49 E-value=2.5e+02 Score=29.64 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=64.1
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC-cEEEEEeecccccccCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI-PFELEILSLETLISASW 532 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV-pFEF~~V~lesL~~~~~ 532 (706)
+|+|+|.|.|. +..++..+. +.-++|+|+.. +.-++.+.+.+......+.- .+++.. .+...-..
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid----~~vi~~a~~~~~~~~~~~~~~~v~i~~--~D~~~~l~- 140 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---SVEKATLVDID----EKVIELSKKFLPSLAGSYDDPRVDLQI--DDGFKFLA- 140 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCC----HHHHHHHHHHhHhhcccccCCceEEEE--CchHHHHH-
Confidence 88999998876 344444433 34578999753 22344455555444322211 122222 12111000
Q ss_pred CCCCCCCCCceEEEecCcccccCCCCC--HHHHHHHH-HhcCCcEEEEeecCCCCCCCCh-HHHHHHHHHHHHHHhhhhh
Q 005237 533 PLPLQGLENDVTAVNLPIGVFSNYPAT--FPLVLRFV-KQLQPKIVVSLDRSCDRPDFPF-AHHMVHALQSYSGLLESLD 608 (706)
Q Consensus 533 ~l~Lr~~~dEaLAVN~~~~~l~~~p~~--~~~vL~~I-RsL~PkVVVlvEqeadhns~~F-~~RF~EAL~yYsAlFDSLD 608 (706)
.. ...=++|+++..... ..... ...+++.+ +.|+|.-++++.-+ ++.+ ...|....+....+|....
T Consensus 141 --~~-~~~yDvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~----~~~~~~~~~~~~~~tl~~~F~~v~ 211 (270)
T TIGR00417 141 --DT-ENTFDVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSE----SPWIQLELITDLKRDVKEAFPITE 211 (270)
T ss_pred --hC-CCCccEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCC----CcccCHHHHHHHHHHHHHHCCCeE
Confidence 00 112357887764221 10111 35666665 67999999888532 1222 3344444444455555443
No 55
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=49.43 E-value=1.2e+02 Score=33.42 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=53.9
Q ss_pred eeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC--cEEEEEeecccccc
Q 005237 452 RIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI--PFELEILSLETLIS 529 (706)
Q Consensus 452 rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV--pFEF~~V~lesL~~ 529 (706)
...|+|+|.|.|. +...|+. .+ .++|||+.. +..++.+.++ ++..++ ..+|..-.++++..
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s----~~~i~~Ar~~----~~~~~~~~~i~~~~~dae~l~~ 194 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAV----DKNVKIARLH----ADMDPVTSTIEYLCTTAEKLAD 194 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCC----HHHHHHHHHH----HHhcCcccceeEEecCHHHhhh
Confidence 3479999999997 4556764 33 489999864 2223333332 222222 34554433333321
Q ss_pred cCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 530 ASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 530 ~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
....=++|+....++.+.+ .+.+|+.+ +-|+|.-.+++.
T Consensus 195 -------~~~~FD~Vi~~~vLeHv~d----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 195 -------EGRKFDAVLSLEVIEHVAN----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred -------ccCCCCEEEEhhHHHhcCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 1011235554444554432 35677666 567999888765
No 56
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=48.97 E-value=2.3e+02 Score=32.27 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=61.1
Q ss_pred HhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEee
Q 005237 445 EAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILS 523 (706)
Q Consensus 445 EA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~ 523 (706)
+.+.-.+.-+|+|+|.|.|. +--.||.+. -+++||+.. +..++.+.+++ +..|+. .+|..-.
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s----~~al~~A~~n~----~~~~~~~v~~~~~d 353 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGV----EAMVERARENA----RRNGLDNVTFYHAN 353 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCC----HHHHHHHHHHH----HHcCCCceEEEEeC
Confidence 33333344589999999985 333456442 389999854 23355554443 344553 5554433
Q ss_pred cccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeec
Q 005237 524 LETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDR 580 (706)
Q Consensus 524 lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEq 580 (706)
+++.... ..+....-++|++|-|.. ....++..|.+++|+.+|.+.-
T Consensus 354 ~~~~l~~---~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTD---QPWALGGFDKVLLDPPRA-------GAAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hHHhhhh---hhhhcCCCCEEEECcCCc-------ChHHHHHHHHhcCCCeEEEEEe
Confidence 2221110 001111236888886532 2457788999999999888754
No 57
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=48.83 E-value=60 Score=26.97 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=47.0
Q ss_pred EecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCCCC
Q 005237 456 IDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLP 535 (706)
Q Consensus 456 IDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~l~ 535 (706)
+|+|.|.|.-...|.+. +-.++|+++.. +..++ ...+..+..++. |.....+++ .
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~----~~~~~----~~~~~~~~~~~~--~~~~d~~~l-------~ 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS----EEMLE----QARKRLKNEGVS--FRQGDAEDL-------P 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-----HHHHH----HHHHHTTTSTEE--EEESBTTSS-------S
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC----HHHHH----HHHhcccccCch--heeehHHhC-------c
Confidence 58888888766555553 46789999853 11222 333333444444 333222222 1
Q ss_pred CCCCCC--ceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEE
Q 005237 536 LQGLEN--DVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVS 577 (706)
Q Consensus 536 Lr~~~d--EaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVl 577 (706)
+. ++ ++|..+..++.+ ..+..+|+-+ |-|+|.-+++
T Consensus 56 ~~--~~sfD~v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 56 FP--DNSFDVVFSNSVLHHL----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp S---TT-EEEEEEESHGGGS----SHHHHHHHHHHHHEEEEEEEE
T ss_pred cc--cccccccccccceeec----cCHHHHHHHHHHHcCcCeEEe
Confidence 22 22 345555555544 2345555554 7888887765
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=48.42 E-value=10 Score=32.97 Aligned_cols=97 Identities=23% Similarity=0.279 Sum_probs=41.9
Q ss_pred EecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCCCC
Q 005237 456 IDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLP 535 (706)
Q Consensus 456 IDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~l~ 535 (706)
+|+|-|.|.==..|++.+ |..++|+++.+.+. +..+.+|+.+.- +..+++..+ ...+....
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~----l~~a~~~~~~~~---~~~~~~~~~--~~~~~~~~--- 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM----LERARERLAELG---NDNFERLRF--DVLDLFDY--- 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST----TSTTCCCHHHCT------EEEEE----SSS---C---
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH----HHHHHHHhhhcC---CcceeEEEe--ecCChhhc---
Confidence 477777776555556555 79999999976331 222223333222 222222222 21111100
Q ss_pred CCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEE
Q 005237 536 LQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIV 575 (706)
Q Consensus 536 Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVV 575 (706)
.....=+.|+.+..++.+ ..++.+|+.+ +.|+|.-+
T Consensus 62 ~~~~~fD~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHL----EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp CC----SEEEEE-TTS------S-HHHHHHHHTTT-TSS-E
T ss_pred ccccccceehhhhhHhhh----hhHHHHHHHHHHHcCCCCC
Confidence 000122466666666655 3467888877 46677543
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=47.96 E-value=48 Score=35.40 Aligned_cols=100 Identities=24% Similarity=0.248 Sum_probs=62.1
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISA 530 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~ 530 (706)
...-|+|+|.|-| .|-+.|| |.| .++||||.. +..++ -=...|.+-|+..+|....+++|...
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mA-r~G----a~VtgiD~s----e~~I~----~Ak~ha~e~gv~i~y~~~~~edl~~~ 121 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLA-RLG----ASVTGIDAS----EKPIE----VAKLHALESGVNIDYRQATVEDLASA 121 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHH-HCC----CeeEEecCC----hHHHH----HHHHhhhhccccccchhhhHHHHHhc
Confidence 4567999999888 7888888 444 899999854 11222 12335667789999998887777552
Q ss_pred CCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe
Q 005237 531 SWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL 578 (706)
Q Consensus 531 ~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv 578 (706)
. ..=++|+..=++.+ .|.+. .|++. .+-++|.-+++.
T Consensus 122 ~-------~~FDvV~cmEVlEH---v~dp~-~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 122 G-------GQFDVVTCMEVLEH---VPDPE-SFLRACAKLVKPGGILFL 159 (243)
T ss_pred C-------CCccEEEEhhHHHc---cCCHH-HHHHHHHHHcCCCcEEEE
Confidence 1 11134433323333 33333 45554 578899877764
No 60
>PRK14968 putative methyltransferase; Provisional
Probab=47.88 E-value=2.4e+02 Score=27.02 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=23.2
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
+.-.|+|+|.|.|. +...|+.+ ..+||+++..
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s 54 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDIN 54 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-----cceEEEEECC
Confidence 34469999999998 45556655 2589999853
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=47.81 E-value=1.9e+02 Score=31.11 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=62.4
Q ss_pred HHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc--E
Q 005237 440 NQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP--F 517 (706)
Q Consensus 440 NQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp--F 517 (706)
...|+|.+.=+.-=||+|+|.| |=.++..+|+|.| .++|||..+ .+-.+...+.++..|++ .
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS--------~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS--------EEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES---------HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC--------HHHHHHHHHHHHhcCCCCce
Confidence 4456676664555589999855 7788899998863 589999753 11223455667788886 4
Q ss_pred EEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 518 ELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 518 EF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
++......+++. .=|-+|.|- ++..+- +...+.+++.+ +-|+|.-.+++.
T Consensus 115 ~v~~~D~~~~~~---------~fD~IvSi~-~~Ehvg--~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EVRLQDYRDLPG---------KFDRIVSIE-MFEHVG--RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEES-GGG------------S-SEEEEES-EGGGTC--GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEeeccccCC---------CCCEEEEEe-chhhcC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 443322222221 112234443 233231 13467889888 678999887764
No 62
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=46.59 E-value=2.1e+02 Score=31.46 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEE
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEI 521 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~ 521 (706)
+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ -+++||+... .-+.+ .+...+++.. .-...+..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~----~ml~q-~~~~~~~~~~-~~~v~~~~ 177 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTV----LFLCQ-FEAVRKLLDN-DKRAILEP 177 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCH----HHHHH-HHHHHHHhcc-CCCeEEEE
Confidence 45555443333489999999986 34445433 32 2789998642 11211 1222222221 12344444
Q ss_pred eecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEee
Q 005237 522 LSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLD 579 (706)
Q Consensus 522 V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvE 579 (706)
..++++.. .. .=++|..+..+.+. +++.+.+-+.-+.|+|.-.++++
T Consensus 178 ~~ie~lp~------~~--~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHE------LY--AFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCCC------CC--CcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 44444422 01 22466656544332 33444444444779999777654
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=44.67 E-value=3.1e+02 Score=30.01 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=53.3
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEIL 522 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V 522 (706)
|++.+..-+.-+|+|+|.|.|.. +..++.+ |+ . +++||+... ..+.. .+...++++ .....+|...
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~-~-~V~GiD~S~----~~l~q-~~a~~~~~~-~~~~i~~~~~ 179 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GA-K-LVVGIDPSQ----LFLCQ-FEAVRKLLG-NDQRAHLLPL 179 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CC-C-EEEEEcCCH----HHHHH-HHHHHHhcC-CCCCeEEEeC
Confidence 34444322224799999998843 2345544 22 2 599998541 11211 011122221 1234555554
Q ss_pred ecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEee
Q 005237 523 SLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLD 579 (706)
Q Consensus 523 ~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvE 579 (706)
.++++. + ...=++|+.+..+++. .++...+-+.-+.|+|...++++
T Consensus 180 d~e~lp-------~-~~~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 180 GIEQLP-------A-LKAFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CHHHCC-------C-cCCcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 444332 1 0112455555444432 23344444445788999877765
No 64
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=43.47 E-value=1e+02 Score=32.99 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=69.1
Q ss_pred HHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEee
Q 005237 444 LEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILS 523 (706)
Q Consensus 444 LEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~ 523 (706)
|.-+.-+.--.|+|+|.|-|.+= +-|+.|= |-=.||||+++. + .|.+ |++..+..+|..-.
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~-----~------Mla~-Aa~rlp~~~f~~aD 83 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSP-----A------MLAK-AAQRLPDATFEEAD 83 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCH-----H------HHHH-HHHhCCCCceeccc
Confidence 33344455667999999999764 3445454 355799999651 1 2333 45555667776543
Q ss_pred cccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeecCCCC
Q 005237 524 LETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDR 584 (706)
Q Consensus 524 lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEqeadh 584 (706)
+.++.+. .+-+.|.-|..++-+ |...+.+-+.+-.|.|.-+.-|-.-.|+
T Consensus 84 l~~w~p~--------~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 84 LRTWKPE--------QPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred HhhcCCC--------Cccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 3333331 133466778776543 4456677788899999999888654454
No 65
>PRK06922 hypothetical protein; Provisional
Probab=43.01 E-value=2.6e+02 Score=34.18 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=55.7
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCC
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASW 532 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~ 532 (706)
-.|+|+|.|.|. ++..|+.+. |..++|||+.+. .-++.+.+++ ...+..+++..-...++..
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~----~MLe~Ararl----~~~g~~ie~I~gDa~dLp~--- 481 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISE----NVIDTLKKKK----QNEGRSWNVIKGDAINLSS--- 481 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCH----HHHHHHHHHh----hhcCCCeEEEEcchHhCcc---
Confidence 479999999984 445666543 468999999652 2244444332 2335555543222111110
Q ss_pred CCCCCCCCCceEEEecCcccccC-C--------CCCHHHHHHHH-HhcCCcEEEEe
Q 005237 533 PLPLQGLENDVTAVNLPIGVFSN-Y--------PATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 533 ~l~Lr~~~dEaLAVN~~~~~l~~-~--------p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
.+....=++|+.|..+|.+.. . ......+|+.+ +.|+|.-.+++
T Consensus 482 --~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 --SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred --ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 011111246666766653311 0 11234566554 79999876654
No 66
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=42.63 E-value=1.7e+02 Score=30.28 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHH
Q 005237 448 EGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLK 507 (706)
Q Consensus 448 eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~ 507 (706)
...+..+|+|+|.|.|.=- -.|+... |..++|+++.. +..++.+.+++.
T Consensus 105 ~~~~~~~vLDiG~GsG~~~----~~la~~~---~~~~v~~iDis----~~~l~~a~~n~~ 153 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIA----LALAKER---PDAEVTAVDIS----PEALAVARRNAK 153 (275)
T ss_pred cccCCCEEEEEcCcHHHHH----HHHHHHC---CCCEEEEEECC----HHHHHHHHHHHH
Confidence 3455678999999998533 3333322 45789999853 223555555544
No 67
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=41.64 E-value=45 Score=25.96 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=23.6
Q ss_pred ceEEEecCccc--ccCCCCCHHHHHHHHHhcCCcEEEEe
Q 005237 542 DVTAVNLPIGV--FSNYPATFPLVLRFVKQLQPKIVVSL 578 (706)
Q Consensus 542 EaLAVN~~~~~--l~~~p~~~~~vL~~IRsL~PkVVVlv 578 (706)
|.+-|||.+.. ++. ....+.++.+|+.++|+.+++|
T Consensus 1 e~i~v~a~v~~~~fSg-Had~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG-HADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSS-S-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecC-CCCHHHHHHHHHhcCCCEEEEe
Confidence 34566665432 222 2458899999999999999987
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=41.11 E-value=3.1e+02 Score=27.65 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=54.5
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc--EEE
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP--FEL 519 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp--FEF 519 (706)
.++++++-...-+|+|+|.|.|..=..|.+.+ .+ .-++++|+.. +..++.+.+++. ..|+. .+|
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~~-----~g~V~~iD~~----~~~~~~a~~~l~----~~~~~~~v~~ 128 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-ER-----RGKVYTVEIV----KELAIYAAQNIE----RLGYWGVVEV 128 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-CC-----CCEEEEEeCC----HHHHHHHHHHHH----HcCCCCcEEE
Confidence 45566654445679999998887533333332 11 2279999853 223444555553 34553 444
Q ss_pred EEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEe
Q 005237 520 EILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSL 578 (706)
Q Consensus 520 ~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlv 578 (706)
..-...+. +. ....-++|+++.....+ | +. ..+.|+|.-.+++
T Consensus 129 ~~~d~~~~----~~---~~~~fD~Ii~~~~~~~~---~---~~---l~~~L~~gG~lvi 171 (205)
T PRK13944 129 YHGDGKRG----LE---KHAPFDAIIVTAAASTI---P---SA---LVRQLKDGGVLVI 171 (205)
T ss_pred EECCcccC----Cc---cCCCccEEEEccCcchh---h---HH---HHHhcCcCcEEEE
Confidence 33211110 10 11234678888654321 1 22 3467888665544
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=40.42 E-value=3.1e+02 Score=30.36 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=81.7
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEE
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELE 520 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~ 520 (706)
.|..++. ....|||||.|.|..=..||++|..+ +. ..+..+|+.+ ...|+.+.++|. .-..| .+++
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS----~~~L~~a~~~L~----~~~~p~l~v~ 135 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVS----RSELQRTLAELP----LGNFSHVRCA 135 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECC----HHHHHHHHHhhh----hccCCCeEEE
Confidence 4445553 23479999999999999999999732 22 4677899865 235777777776 11234 6677
Q ss_pred Eeeccccccc-CCCCCCCCCCCceEEEecCcccccCCC-CCHHHHHHHHHh--cCCcEEEEeecCCC---------CCCC
Q 005237 521 ILSLETLISA-SWPLPLQGLENDVTAVNLPIGVFSNYP-ATFPLVLRFVKQ--LQPKIVVSLDRSCD---------RPDF 587 (706)
Q Consensus 521 ~V~lesL~~~-~~~l~Lr~~~dEaLAVN~~~~~l~~~p-~~~~~vL~~IRs--L~PkVVVlvEqead---------hns~ 587 (706)
+|.. +.+.. .|... ....+...+|-++=.++-+.+ .....||+.+++ |+|.-..++--|.. .|++
T Consensus 136 ~l~g-dy~~~l~~l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~ 213 (319)
T TIGR03439 136 GLLG-TYDDGLAWLKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDP 213 (319)
T ss_pred EEEe-cHHHHHhhccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCC
Confidence 6632 22211 11000 000122333333212333322 234478999977 89977666543322 2222
Q ss_pred -ChHHH-HHHHHHHHHHHhhh
Q 005237 588 -PFAHH-MVHALQSYSGLLES 606 (706)
Q Consensus 588 -~F~~R-F~EAL~yYsAlFDS 606 (706)
....+ ..+.|.+.-..++.
T Consensus 214 ~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 214 GGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred cchhHHHHHHHHHHHHHHhCc
Confidence 23333 35666666666664
No 70
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=39.15 E-value=3.7e+02 Score=28.02 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=50.1
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccccC
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLISAS 531 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~~~ 531 (706)
=+|+|+|.|.|.- ..++ +.+. .+.-+||+|+.. +..++.+.++ ++..+++ .+|..-.++++
T Consensus 79 ~~VLDiG~G~G~~-~~~~---a~~~--g~~~~v~gvD~s----~~~l~~A~~~----~~~~g~~~v~~~~~d~~~l---- 140 (272)
T PRK11873 79 ETVLDLGSGGGFD-CFLA---ARRV--GPTGKVIGVDMT----PEMLAKARAN----ARKAGYTNVEFRLGEIEAL---- 140 (272)
T ss_pred CEEEEeCCCCCHH-HHHH---HHHh--CCCCEEEEECCC----HHHHHHHHHH----HHHcCCCCEEEEEcchhhC----
Confidence 4899999988742 2222 2211 134589999854 2224444333 3344542 33333222221
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHH-HHHhcCCcEEEEe
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLR-FVKQLQPKIVVSL 578 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~-~IRsL~PkVVVlv 578 (706)
.+.-..=++|+.|+.++.. ++ .+.+|+ ..|-|+|.-.+++
T Consensus 141 ---~~~~~~fD~Vi~~~v~~~~---~d-~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 141 ---PVADNSVDVIISNCVINLS---PD-KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred ---CCCCCceeEEEEcCcccCC---CC-HHHHHHHHHHHcCCCcEEEE
Confidence 1110011466667766532 22 334444 4588999976654
No 71
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=37.85 E-value=2.3e+02 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=26.9
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
|++.+.-.+.-+|+|+|.|.|. +...|+.+. + ++|||+..
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~avE~d 73 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGA----LTEPLLERA--A---KVTAVEID 73 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccH----HHHHHHHhC--C---cEEEEECC
Confidence 3444443455689999999884 556666552 2 89999854
No 72
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=36.90 E-value=5.5e+02 Score=27.38 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=98.9
Q ss_pred hCCccchh-HHHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHH
Q 005237 428 ISPILQFA-NFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENL 506 (706)
Q Consensus 428 ~sP~lkFA-hftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL 506 (706)
...++.|+ |.+=+++..+.+.-.+--+|+|.+.|-|- |. -.|+++-+ .-+||++|.+. .-|..+.+|+
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~a---~~~~k~~g---~g~v~~~D~s~----~ML~~a~~k~ 95 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-MA---LLLAKSVG---TGEVVGLDISE----SMLEVAREKL 95 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-HH---HHHHHhcC---CceEEEEECCH----HHHHHHHHHh
Confidence 34555555 34556666665543468899999988874 23 33343333 78999999652 2355555554
Q ss_pred HHHHHhcCCc-EEEEEeecccccccCCCCCCCCCCC--ceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeecCC
Q 005237 507 KHFASEINIP-FELEILSLETLISASWPLPLQGLEN--DVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDRSC 582 (706)
Q Consensus 507 ~~fA~~lgVp-FEF~~V~lesL~~~~~~l~Lr~~~d--EaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEqea 582 (706)
. +.|+. ++|..-..+.| ++ .++ +++.+.+.++.+. ..+.+|+-+ |=|+|...+++-.=.
T Consensus 96 ~----~~~~~~i~fv~~dAe~L-------Pf--~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 96 K----KKGVQNVEFVVGDAENL-------PF--PDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred h----ccCccceEEEEechhhC-------CC--CCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 4 33333 55543222222 22 232 4666666555443 355666554 778999977653332
Q ss_pred CCCCCChHHHHHHHHH-HHHH-HhhhhhcCCC-ChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCcccc
Q 005237 583 DRPDFPFAHHMVHALQ-SYSG-LLESLDSVNV-NLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLT 659 (706)
Q Consensus 583 dhns~~F~~RF~EAL~-yYsA-lFDSLDa~~~-~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pvp 659 (706)
....+.| ..+++ ||.. ++=.+..... +.++. .++..-|+. +-..+.-...|+.+||..+.
T Consensus 159 ~p~~~~~----~~~~~~~~~~~v~P~~g~~~~~~~~~y-----~yL~eSi~~--------~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 159 KPDNPVL----RKAYILYYFKYVLPLIGKLVAKDAEAY-----EYLAESIRR--------FPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CCCchhh----HHHHHHHHHHhHhhhhceeeecChHHH-----HHHHHHHHh--------CCCHHHHHHHHHhcCceEEe
Confidence 3333222 23333 4444 4444444211 23322 233333333 34556777788889998765
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=36.48 E-value=4.5e+02 Score=27.96 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=32.2
Q ss_pred eEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc--EEEEE
Q 005237 453 IHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP--FELEI 521 (706)
Q Consensus 453 VHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp--FEF~~ 521 (706)
.+|+|+|.|.|.--.. |+.+. |..+||+++.. +..++.+.++ ++..++. ++|..
T Consensus 116 ~~vLDlG~GsG~i~l~----la~~~---~~~~v~avDis----~~al~~a~~n----~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 116 LHILDLGTGSGCIALA----LAYEF---PNAEVIAVDIS----PDALAVAEEN----AEKNQLEHRVEFIQ 171 (284)
T ss_pred CEEEEEeccHhHHHHH----HHHHC---CCCEEEEEECC----HHHHHHHHHH----HHHcCCCCcEEEEE
Confidence 5899999999954433 34322 24689999854 2235444444 4455664 44443
No 74
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=36.22 E-value=3.1e+02 Score=28.54 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=28.7
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
+.|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+..
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d 60 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEID 60 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECC
Confidence 456666655556689999999987 556666554 1 39999753
No 75
>PLN02366 spermidine synthase
Probab=34.57 E-value=4.3e+02 Score=28.98 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=55.2
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|.|.|. +..++++. |+.-+||.|+.. +.-++.+.+.+.+....+. .=.++.+..+...-.
T Consensus 94 rVLiIGgG~G~----~~rellk~---~~v~~V~~VEiD----~~Vi~~ar~~f~~~~~~~~-dpRv~vi~~Da~~~l--- 158 (308)
T PLN02366 94 KVLVVGGGDGG----VLREIARH---SSVEQIDICEID----KMVIDVSKKFFPDLAVGFD-DPRVNLHIGDGVEFL--- 158 (308)
T ss_pred eEEEEcCCccH----HHHHHHhC---CCCCeEEEEECC----HHHHHHHHHhhhhhccccC-CCceEEEEChHHHHH---
Confidence 56888888776 56677654 446799999843 2224444454443321110 001222222211100
Q ss_pred CCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeecC
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDRS 581 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEqe 581 (706)
....-..=++|++.+.........-....|++.+ +.|+|..++++--+
T Consensus 159 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 159 KNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred hhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 0010112368888764321100000124677776 68999999876433
No 76
>PRK00811 spermidine synthase; Provisional
Probab=32.76 E-value=3.3e+02 Score=29.12 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=63.5
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhc--CCcEEEEEeecccccccC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEI--NIPFELEILSLETLISAS 531 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~l--gVpFEF~~V~lesL~~~~ 531 (706)
+|+|+|.|.|.= ..++.++ ++.-+||+|+.. +.-++.+.+.+.++.... +-.+++.. .+...
T Consensus 79 ~VL~iG~G~G~~----~~~~l~~---~~~~~V~~VEid----~~vv~~a~~~~~~~~~~~~~d~rv~v~~--~Da~~--- 142 (283)
T PRK00811 79 RVLIIGGGDGGT----LREVLKH---PSVEKITLVEID----ERVVEVCRKYLPEIAGGAYDDPRVELVI--GDGIK--- 142 (283)
T ss_pred EEEEEecCchHH----HHHHHcC---CCCCEEEEEeCC----HHHHHHHHHHhHHhccccccCCceEEEE--CchHH---
Confidence 678888887643 3444433 234589999853 333455555555544322 11233322 22111
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLES 606 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEqeadhns~~F~~RF~EAL~yYsAlFDS 606 (706)
+... ....=++|++++.........-....|++.+ +.|+|..++++..++.... ...+...+.....+|.-
T Consensus 143 ~l~~-~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~---~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 143 FVAE-TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQ---ADEIKDMHRKLKEVFPI 214 (283)
T ss_pred HHhh-CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccC---HHHHHHHHHHHHHHCCC
Confidence 0000 0112368888764221000000125677654 7899999988754432211 23444444444444543
No 77
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=32.38 E-value=6.6e+02 Score=28.43 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
+-+.+..++.-.+.-.|+|++.+.|.--..+.+.+- .-+|++++.. +..++.+.++ ++++|+..+
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~----~~~l~~~~~n----~~r~g~~~~ 290 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIH----EHRLKRVYEN----LKRLGLTIK 290 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCC----HHHHHHHHHH----HHHcCCCeE
Confidence 455666666644445899999999977666655431 3489999853 2234444444 456788754
Q ss_pred EEEe
Q 005237 519 LEIL 522 (706)
Q Consensus 519 F~~V 522 (706)
+..+
T Consensus 291 v~~~ 294 (426)
T TIGR00563 291 AETK 294 (426)
T ss_pred EEEe
Confidence 4333
No 78
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=31.72 E-value=2.5e+02 Score=32.23 Aligned_cols=38 Identities=13% Similarity=0.389 Sum_probs=26.4
Q ss_pred ceEEEecCcccccCCCCCHHHHHHHHHhcCCcEEEEeecC
Q 005237 542 DVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRS 581 (706)
Q Consensus 542 EaLAVN~~~~~l~~~p~~~~~vL~~IRsL~PkVVVlvEqe 581 (706)
+.++||++=+ +... ..++.....|...+|+.|+.+|.+
T Consensus 173 ~~ilIdT~GW-i~G~-~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 173 DFILIDTDGW-IKGW-GGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CEEEEcCCCc-eeCc-hHHHHHHHHHhhcCCCEEEEeccc
Confidence 4667776522 1111 346777888999999999999886
No 79
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=31.54 E-value=6.5e+02 Score=26.94 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.9
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP 516 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp 516 (706)
+..+|+|+|.|.|. +.-.|+.+. |..++|+|+.. +..++.+.++ |+..|+.
T Consensus 121 ~~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis----~~al~~A~~n----~~~~~~~ 171 (284)
T TIGR03533 121 PVKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDIS----PDALAVAEIN----IERHGLE 171 (284)
T ss_pred CCCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECC----HHHHHHHHHH----HHHcCCC
Confidence 34589999999986 344455432 35699999854 2345555555 4455654
No 80
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=30.98 E-value=3.2e+02 Score=30.55 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=50.9
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISA 530 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~ 530 (706)
...+|+|+|.|.|.-. ..|+++.+ ..++|+|+.. +.-++.+.++. ..-++ +|.. .++..
T Consensus 113 ~~~~VLDLGcGtG~~~----l~La~~~~---~~~VtgVD~S----~~mL~~A~~k~----~~~~i--~~i~---gD~e~- 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTT----LGIVKHVD---AKNVTILDQS----PHQLAKAKQKE----PLKEC--KIIE---GDAED- 171 (340)
T ss_pred CCCEEEEEecCCcHHH----HHHHHHCC---CCEEEEEECC----HHHHHHHHHhh----hccCC--eEEe---ccHHh-
Confidence 4568999999998733 33443332 2589999853 22233333332 11233 2322 11211
Q ss_pred CCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237 531 SWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL 578 (706)
Q Consensus 531 ~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv 578 (706)
+.+....-++|+.|..++.+. . .+.+|+.+ |.|+|.-.+++
T Consensus 172 ---lp~~~~sFDvVIs~~~L~~~~---d-~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 172 ---LPFPTDYADRYVSAGSIEYWP---D-PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---CCCCCCceeEEEEcChhhhCC---C-HHHHHHHHHHhcCCCcEEEE
Confidence 112111224676666555332 2 34556554 78999877654
No 81
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=30.90 E-value=53 Score=35.42 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.0
Q ss_pred ccCceeEEEecccccccchHHHHHHHhc
Q 005237 448 EGCNRIHIIDFDIGYGGQWASLMQELVF 475 (706)
Q Consensus 448 eG~~rVHIIDFgIg~G~QWpsLIQaLA~ 475 (706)
.|.+.|||||+|-+.+.+ ..+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 599999999999866677 556777876
No 82
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=30.25 E-value=4.6e+02 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
.|++++.-.+.=.|+|+|.|.|.-- ..|+.+. -++++|+..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEID 67 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECC
Confidence 3444444334447999999988744 4444442 268999843
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=29.59 E-value=6.1e+02 Score=26.10 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEE
Q 005237 441 QALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELE 520 (706)
Q Consensus 441 QAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~ 520 (706)
..|++|+.--+.-.++|+|-|.|.= + --||++ -+.+|+++.. + ..-++|.+.|+.-+++++..
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~-----G~~VtAvD~s----~----~al~~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ-----GFDVTAVDIS----P----VALEKLQRLAEEEGLDIRTR 82 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT-----T-EEEEEESS----H----HHHHHHHHHHHHTT-TEEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC-----CCeEEEEECC----H----HHHHHHHHHHhhcCceeEEE
Confidence 4577777766667899999998852 1 124433 3689999854 2 23357899999999998877
Q ss_pred EeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHH-hcCCcEEEEe
Q 005237 521 ILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVK-QLQPKIVVSL 578 (706)
Q Consensus 521 ~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IR-sL~PkVVVlv 578 (706)
...+++.+ +. ..-++|+-...++.+. +..++.+++.|+ .++|-.+.+.
T Consensus 83 ~~Dl~~~~-------~~-~~yD~I~st~v~~fL~--~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 83 VADLNDFD-------FP-EEYDFIVSTVVFMFLQ--RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp E-BGCCBS--------T-TTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred Eecchhcc-------cc-CCcCEEEEEEEeccCC--HHHHHHHHHHHHhhcCCcEEEEE
Confidence 75543322 11 1113333223333332 245778888875 5789865544
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=28.74 E-value=5.8e+02 Score=25.21 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc
Q 005237 437 FTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP 516 (706)
Q Consensus 437 ftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp 516 (706)
--....|++.+.-...=.|+|+|-|.|. +.. .++.+. |.-+||+|+.. +..++.+.+++ +.+++.
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~---~la~~~---~~~~V~~vD~s----~~~~~~a~~n~----~~~~~~ 90 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGT-IPV---EAGLLC---PKGRVIAIERD----EEVVNLIRRNC----DRFGVK 90 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHH---HHHHHC---CCCEEEEEeCC----HHHHHHHHHHH----HHhCCC
Confidence 3345556666653444479999999997 222 223221 23589999853 22344444444 344553
Q ss_pred -EEEEEeeccc-ccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 517 -FELEILSLET-LISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 517 -FEF~~V~les-L~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
++|..-.+.+ ++. +.. ..+.+.+.. ....+.+|+.+ +.|+|.-.+++..
T Consensus 91 ~v~~~~~d~~~~~~~------~~~-~~d~v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 91 NVEVIEGSAPECLAQ------LAP-APDRVCIEG--------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CeEEEECchHHHHhh------CCC-CCCEEEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 4433221111 111 111 113343321 12355677765 5899997777654
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=27.30 E-value=6e+02 Score=29.08 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEE
Q 005237 442 ALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEI 521 (706)
Q Consensus 442 AILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~ 521 (706)
-+++.+.+.+.-.|||+|.|.| .++-.||.+. |...++||+.. ...+.. +.+-|+..|+.= +..
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI~----~~~i~~----a~~ka~~~gL~N-V~~ 176 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEIH----TPSIEQ----VLKQIELLNLKN-LLI 176 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEECC----HHHHHH----HHHHHHHcCCCc-EEE
Confidence 3556677777778999999998 4556677654 56789999853 112333 333344556531 333
Q ss_pred eecc--cccccCCCCCCCCCCCceEEEecCcccccCC--CCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 522 LSLE--TLISASWPLPLQGLENDVTAVNLPIGVFSNY--PATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 522 V~le--sL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~--p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
+..+ .+.. .+.-..=+.|.+|++..-.... .-..+.+|+.+ |-|+|...+.+--
T Consensus 177 i~~DA~~ll~-----~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 177 INYDARLLLE-----LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EECCHHHhhh-----hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3222 1111 0111111467788764211000 00124666665 7889998776543
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.18 E-value=1.3e+02 Score=31.07 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=34.8
Q ss_pred HHhhccCceeEEEecccccc---cchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHH
Q 005237 444 LEAFEGCNRIHIIDFDIGYG---GQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFA 510 (706)
Q Consensus 444 LEA~eG~~rVHIIDFgIg~G---~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA 510 (706)
|-+++=.+.=|++|+|-|.| .+|. ++ .|..|+++|+. ++..++.+.+|+.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~----~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIER----DEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEec----CHHHHHHHHHHHHHhC
Confidence 44455444449999999987 5776 22 46889999983 3445666666655543
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=26.92 E-value=4e+02 Score=26.51 Aligned_cols=126 Identities=11% Similarity=0.099 Sum_probs=62.8
Q ss_pred ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-EEEEEeecccccc
Q 005237 451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP-FELEILSLETLIS 529 (706)
Q Consensus 451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp-FEF~~V~lesL~~ 529 (706)
+.--|+|+|.|.|.= +-.||.+. |...++||+.. ...++.+.+++ +..|+. .+|....+.++..
T Consensus 16 ~~~~ilDiGcG~G~~----~~~la~~~---p~~~v~gvD~~----~~~l~~a~~~~----~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRF----LIDMAKQN---PDKNFLGIEIH----TPIVLAANNKA----NKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CCceEEEeCCCccHH----HHHHHHhC---CCCCEEEEEee----HHHHHHHHHHH----HHhCCCCEEEEccCHHHHHH
Confidence 344799999998854 34455443 45689999854 22244333333 344553 3443322222211
Q ss_pred cCCCCCCCCCCCceEEEecCcccccCC----CCCHHHHHHHH-HhcCCcEEEEeecCCCCCCCChHHHHHHHHHH
Q 005237 530 ASWPLPLQGLENDVTAVNLPIGVFSNY----PATFPLVLRFV-KQLQPKIVVSLDRSCDRPDFPFAHHMVHALQS 599 (706)
Q Consensus 530 ~~~~l~Lr~~~dEaLAVN~~~~~l~~~----p~~~~~vL~~I-RsL~PkVVVlvEqeadhns~~F~~RF~EAL~y 599 (706)
.. +....=+.|.+|++....... .-..+.+|+.+ +.|+|.-.+.+.-+. ..+...+.+++..
T Consensus 81 ~~----~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~~~~~~~ 147 (194)
T TIGR00091 81 KF----FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDMLKVLSE 147 (194)
T ss_pred hh----CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 00 110011477788764211100 00125677765 678999888765432 2234444444444
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=26.77 E-value=3.4e+02 Score=21.82 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=51.2
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccCCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWP 533 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~ 533 (706)
+|+|+|-+.|. +...++. .+..++++++... ..+..+.+ ..........+|......+...
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 61 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISP----VALELARK---AAAALLADNVEVLKGDAEELPP---- 61 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCH----HHHHHHHH---HHhcccccceEEEEcChhhhcc----
Confidence 47899988874 4555554 2367999998541 12222221 1111112234443322221111
Q ss_pred CCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEee
Q 005237 534 LPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLD 579 (706)
Q Consensus 534 l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvE 579 (706)
.....-+.+.+|.+++.+ ......+++.+ +.++|...+++.
T Consensus 62 --~~~~~~d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 --EADESFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --ccCCceEEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 111223577777665432 12345666664 568888887765
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=26.68 E-value=5.6e+02 Score=27.36 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhc--cCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 005237 436 NFTCNQALLEAFE--GCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEI 513 (706)
Q Consensus 436 hftANQAILEA~e--G~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~l 513 (706)
+..+.+..++.++ ....-.|+|+|.|.|. |..+++.+ + . -++++|+.. +..++.+.+++ +..
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid----~~al~~a~~n~----~~n 205 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDID----PLAVESARKNA----ELN 205 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECC----HHHHHHHHHHH----HHc
Confidence 4455566666655 2234579999999984 33445543 2 1 389999853 33455555554 334
Q ss_pred CCcEEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHH-HHhcCCcEEEEe
Q 005237 514 NIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRF-VKQLQPKIVVSL 578 (706)
Q Consensus 514 gVpFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~-IRsL~PkVVVlv 578 (706)
++...+..+..+ +.. .....=+.|+.|.... .+..++.. .+.|+|.-.+++
T Consensus 206 ~~~~~~~~~~~~-~~~------~~~~~fDlVvan~~~~-------~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 206 QVSDRLQVKLIY-LEQ------PIEGKADVIVANILAE-------VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred CCCcceEEEecc-ccc------ccCCCceEEEEecCHH-------HHHHHHHHHHHHcCCCcEEEE
Confidence 555433332111 111 1001225777775321 23344444 478899876665
No 90
>PRK04148 hypothetical protein; Provisional
Probab=25.54 E-value=2.7e+02 Score=27.24 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=43.4
Q ss_pred HHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCC------------------CChhhH-----
Q 005237 443 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSST------------------HDEFEL----- 499 (706)
Q Consensus 443 ILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss------------------~~~~eL----- 499 (706)
|.+.....+.-.|+|.|+|+|..-. ..|+++ | ..+|+|+.... ....++
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA---~~L~~~-G----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVA---KKLKES-G----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHH---HHHHHC-C----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCC
Confidence 4455554455679999999886444 344432 2 37777774310 000000
Q ss_pred --------HHHHHHHHHHHHhcCCcEEEEEeecc
Q 005237 500 --------GFTQENLKHFASEINIPFELEILSLE 525 (706)
Q Consensus 500 --------~~tg~rL~~fA~~lgVpFEF~~V~le 525 (706)
.+..+-|.+.|++.|.++=+.++.-|
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 24456677777777777777776544
No 91
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=24.27 E-value=2e+02 Score=28.82 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHH-HHHhcCChHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHhc
Q 005237 344 QQAVIDQIFKAA-ELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHM 401 (706)
Q Consensus 344 ~~~Lv~lLl~CA-eAVesgn~~~A~~iLa~L~~~aSp~Gdp~QRlA~YFaeAL~~RL~~ 401 (706)
+..+...|+.|. ..+..++...|..++..|..+..|..+-..|+..-|.+|+..-..|
T Consensus 124 ~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 124 RRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 345667777765 7788899999999999999998777788899999999999865544
No 92
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=23.91 E-value=74 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred ccCceeEEEecccccccchHHHHHHHhcCC
Q 005237 448 EGCNRIHIIDFDIGYGGQWASLMQELVFRS 477 (706)
Q Consensus 448 eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~ 477 (706)
.|.+.|||||+ +.+ ++ .+|.++++..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 49999999999 444 65 6677776543
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=23.55 E-value=8.1e+02 Score=26.99 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=57.8
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC--cEEEEEeecccccccC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINI--PFELEILSLETLISAS 531 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgV--pFEF~~V~lesL~~~~ 531 (706)
.|+|.|.|.|.=|..++.+-. .|.-++|+|+.. +..++.+.+.+.. ..|+ ..+|+..++.++..
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d----~~ai~~Ar~~~~~---~~gL~~rV~F~~~Da~~~~~-- 191 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDID----PSANDVARRLVSS---DPDLSKRMFFHTADVMDVTE-- 191 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCC----HHHHHHHHHHhhh---ccCccCCcEEEECchhhccc--
Confidence 389999998877776665443 234499999854 3233333322222 2333 36666643322211
Q ss_pred CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEeec
Q 005237 532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSLDR 580 (706)
Q Consensus 532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlvEq 580 (706)
...+=++|.+. .++.+.. .....+|+.| +.|+|.-++++.-
T Consensus 192 -----~l~~FDlVF~~-ALi~~dk--~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -----SLKEYDVVFLA-ALVGMDK--EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -----ccCCcCEEEEe-ccccccc--ccHHHHHHHHHHhcCCCcEEEEec
Confidence 01133566666 4333321 2345666666 5699999999865
No 94
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=22.87 E-value=2.2e+02 Score=25.02 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=21.5
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCC
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSS 491 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~p 491 (706)
+|+|+|.|.|.. ...|+++. |..++|+|+..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999988754 33444442 24789999864
No 95
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.75 E-value=3.7e+02 Score=26.23 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=62.5
Q ss_pred HHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEE
Q 005237 439 CNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFE 518 (706)
Q Consensus 439 ANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFE 518 (706)
+-..|++.+...+.=+|+|+|.|.|.-=- .|+.+ -|..+||+++.. +..++.+.++ ++..++.-
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~----~~a~~~a~~n----~~~n~~~~- 82 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDIN----PDALELAKRN----AERNGLEN- 82 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESB----HHHHHHHHHH----HHHTTCTT-
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCC----HHHHHHHHHH----HHhcCccc-
Confidence 45577777776566779999999995322 33333 357889999853 3344444444 45556662
Q ss_pred EEEeecccccccCCCCCCCCCCCceEEEecCcccccCCC-CCHHHHH-HHHHhcCCcEEEE
Q 005237 519 LEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYP-ATFPLVL-RFVKQLQPKIVVS 577 (706)
Q Consensus 519 F~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p-~~~~~vL-~~IRsL~PkVVVl 577 (706)
++.+..+-++. +....=+.|+.|-|++.-...- ..+..++ ..-+-|+|.-.+.
T Consensus 83 v~~~~~d~~~~------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 83 VEVVQSDLFEA------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp EEEEESSTTTT------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccc------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 33333332222 1212336889998865321100 0123333 3347899998664
No 96
>PRK03612 spermidine synthase; Provisional
Probab=20.53 E-value=7.3e+02 Score=29.11 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=53.1
Q ss_pred EEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHH--HHHHHHH-hcCCcEEEEEeeccccccc
Q 005237 454 HIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQE--NLKHFAS-EINIPFELEILSLETLISA 530 (706)
Q Consensus 454 HIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~--rL~~fA~-~lgVpFEF~~V~lesL~~~ 530 (706)
.|+|+|.|.|. +..++.++ ++--+||+|+.. +.-++.+.+ .+.++.+ .++=| +++.+..|..+
T Consensus 300 rVL~IG~G~G~----~~~~ll~~---~~v~~v~~VEid----~~vi~~ar~~~~l~~~~~~~~~dp-rv~vi~~Da~~-- 365 (521)
T PRK03612 300 RVLVLGGGDGL----ALREVLKY---PDVEQVTLVDLD----PAMTELARTSPALRALNGGALDDP-RVTVVNDDAFN-- 365 (521)
T ss_pred eEEEEcCCccH----HHHHHHhC---CCcCeEEEEECC----HHHHHHHHhCCcchhhhccccCCC-ceEEEEChHHH--
Confidence 57999988885 44555543 233699999843 222232222 1222111 01101 12222222111
Q ss_pred CCCCCCCCCCCceEEEecCcccccC-CCCCHHHHHHHH-HhcCCcEEEEeecC
Q 005237 531 SWPLPLQGLENDVTAVNLPIGVFSN-YPATFPLVLRFV-KQLQPKIVVSLDRS 581 (706)
Q Consensus 531 ~~~l~Lr~~~dEaLAVN~~~~~l~~-~p~~~~~vL~~I-RsL~PkVVVlvEqe 581 (706)
+ +.-....=++|++|++...... ..-...++++.+ +.|+|+-++++.-+
T Consensus 366 -~-l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 366 -W-LRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred -H-HHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 0 0000123479999976432100 001124577654 68999999887654
No 97
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.07 E-value=5.2e+02 Score=28.34 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCc-
Q 005237 438 TCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIP- 516 (706)
Q Consensus 438 tANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVp- 516 (706)
..-..|++-+.=+.--||+|+| +.|=.|+.-.|++-+ .++|||..+.+ .+ +...+-++..|+.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiG----CGWG~l~~~aA~~y~----v~V~GvTlS~~----Q~----~~~~~r~~~~gl~~ 122 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIG----CGWGGLAIYAAEEYG----VTVVGVTLSEE----QL----AYAEKRIAARGLED 122 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeC----CChhHHHHHHHHHcC----CEEEEeeCCHH----HH----HHHHHHHHHcCCCc
Confidence 3344455555556778999997 567789999998773 68999976521 12 2333445566666
Q ss_pred -EEEEEeecccccccCCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHHH-hcCCcEEEE
Q 005237 517 -FELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVK-QLQPKIVVS 577 (706)
Q Consensus 517 -FEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~IR-sL~PkVVVl 577 (706)
.++.....+++.. . =|-+|.|=. |..+.. ...+.++++++ -|+|+-.++
T Consensus 123 ~v~v~l~d~rd~~e-------~--fDrIvSvgm-fEhvg~--~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 123 NVEVRLQDYRDFEE-------P--FDRIVSVGM-FEHVGK--ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccEEEecccccccc-------c--cceeeehhh-HHHhCc--ccHHHHHHHHHhhcCCCceEE
Confidence 3333322222221 0 122343332 333322 34678999885 567776554
Done!