BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005238
(706 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana
GN=At3g16270 PE=1 SV=1
Length = 690
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/712 (59%), Positives = 513/712 (72%), Gaps = 28/712 (3%)
Query: 1 MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
MD+SRRAVESYWRSRMID TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL+
Sbjct: 1 MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60
Query: 61 HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
+KSP+VKQKALRLIKY+VGKSG++FRREMQR+S VR LFHYKG DPLKGDALNKAVR+
Sbjct: 61 NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120
Query: 121 MAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQ 180
AHE ISAIFSEEN P S+N+RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQ
Sbjct: 121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQ 180
Query: 181 GLSSFAQGNSMRKNENG--SYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVA 238
G+S+FAQG+ +KNENG SYR PNL RSLT+EN+ RY+PV+L + G Y SKN
Sbjct: 181 GISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKD--GNYGTSKNTT 238
Query: 239 GGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEA 298
GGSW S E S++ SKTREEKLLETIVT GGVRLQPTRDA+ VF++EA
Sbjct: 239 GGSWGHASGEASE-----SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEA 293
Query: 299 AKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC 358
AK+DA+A+S AL+ KL SP+WQVRMKA+CVLE+ILRKK+DE FSI+ +YF EN D + +C
Sbjct: 294 AKMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRC 353
Query: 359 SESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSET 418
+ESPQSSLREKANKVLSLL Q+ GL+S S+ +VK E V +PDLIDT D +D
Sbjct: 354 AESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKRE--AAVDLPDLIDTGDSDD--TL 409
Query: 419 NNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEH 478
NN N D S ++T+ + DD F DS G ++SE+K DDPFADV FH +E KE
Sbjct: 410 NNL--NAIDTG-STVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPNEEKES 466
Query: 479 VEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFS 538
+DLFSGMTV K A G D D+FGS ++ + ++ K N NDLM FS
Sbjct: 467 ADDLFSGMTVGEKSAAVGGNHVPD------LFDMFGSTAKLEAEPKDAK-NINDLMGSFS 519
Query: 539 INEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANP-FPFGTMP 597
I+E+ +GSS+ + +F+ S+ S Q + + +LGSQ+ G N P G MP
Sbjct: 520 IDENNSNQKGSSSSTLPQDLFAMPSTT-SHQAPENPVGGILGSQNPGFIQNTMLPGGVMP 578
Query: 598 YNIPAGMTLNPSIASQPMNYSAMGNLFA-QQQFLAAMSNLQHIGNLNVHNSGAANLVGGN 656
+N P GM +NP+ ASQP+NY+AM +L A QQQ+L MSN Q GNLN SG +G +
Sbjct: 579 FNFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTS 638
Query: 657 GG--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISDHLASARDSKRVA 706
GG S LPDIFQPNF QA +N SKKEDTRAFDFISDHL SARD+KRV+
Sbjct: 639 GGNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHLTSARDTKRVS 690
>sp|G3V8Y7|AP4AT_RAT AP-4 complex accessory subunit tepsin OS=Rattus norvegicus
GN=Enthd2 PE=2 SV=1
Length = 569
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 13 RSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIG--KEVSDFILKRLEHKSPVVKQKA 70
R ++ TSD+D P Y EEI ++ SH S+G + + +++L RL+ S VK K
Sbjct: 16 RLPILLKGTSDDDIPCPGYLFEEIAKI---SHESLGSSQCLLEYLLNRLDSSSGHVKLKV 72
Query: 71 LRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130
L+++ Y + F ++R+SA++++ + G DPL G++L + VR A + S +F
Sbjct: 73 LKILLYLCSHGSSSFMLILRRNSALIQEATAFAGPPDPLHGNSLYQKVRAAAQDLGSTLF 132
Query: 131 SE 132
S+
Sbjct: 133 SD 134
>sp|Q3U3N6|AP4AT_MOUSE AP-4 complex accessory subunit tepsin OS=Mus musculus GN=Enthd2
PE=1 SV=1
Length = 573
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 13 RSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIG--KEVSDFILKRLEHKSPVVKQKA 70
R ++ TSD+ P Y EEI ++ SH S+G + + +++L RL+ S VK K
Sbjct: 16 RLPILLKGTSDDSIPCPGYLFEEIAKI---SHESLGSSQCLLEYLLNRLDSSSGHVKLKV 72
Query: 71 LRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130
L+++ Y G + F ++R+SA++++ + G DPL G++L + VR A + S +F
Sbjct: 73 LKILLYLCGHGSSSFLLILRRNSALIQEATAFSGPPDPLHGNSLYQKVRAAAQDLGSTLF 132
Query: 131 SE 132
S+
Sbjct: 133 SD 134
>sp|Q4V832|AP4AT_XENLA AP-4 complex accessory subunit tepsin OS=Xenopus laevis GN=enthd2
PE=2 SV=2
Length = 559
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 20 ATSDEDKVTPVYKLEEICELLRSSHVSIG--KEVSDFILKRLEHKSPVVKQKALRLIKYS 77
TSD+D P Y EE ++ S+ S+G + + +++L RL+ S VK K L+++
Sbjct: 17 GTSDDDTPCPGYLYEEFAKI---SYESVGSCQCLLEYLLNRLQTSSCHVKLKVLKILLSL 73
Query: 78 VGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPA 137
F ++++R+SA +++ G DPL G +L + VR A E + +FS E+ P+
Sbjct: 74 CFHGSPQFIQDLRRNSAYIQEAAAVSGPPDPLHGISLYQKVRVTAQEIVGNLFS-ESIPS 132
Query: 138 PVEDLSLNKRIQ-GFGNTNFEMPSEDKKSFLSEVVGLGSA 176
P +S +R Q G G+ P+ + E LG++
Sbjct: 133 PSHTVSAKERSQSGMGSQASSAPALHGFGYSQEEKNLGNS 172
>sp|Q96N21|AP4AT_HUMAN AP-4 complex accessory subunit tepsin OS=Homo sapiens GN=ENTHD2
PE=1 SV=1
Length = 525
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 21 TSDEDKVTPVYKLEEICELLRSSHVSIG--KEVSDFILKRLEHKSPVVKQKALRLIKYSV 78
TSD+D P Y EEI ++ SH S G + + +++L RL S K K L+++ Y
Sbjct: 24 TSDDDVPCPGYLFEEIAKI---SHESPGSSQCLLEYLLSRLHSSSGHGKLKVLKILLYLC 80
Query: 79 GKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKP-A 137
+ F ++R+SA +++ + G DPL G++L + VR A + S +FS+ P A
Sbjct: 81 SHGSSFFLLILKRNSAFIQEAAAFAGPPDPLHGNSLYQKVRAAAQDLGSTLFSDTVLPLA 140
Query: 138 PVEDLSL------------NKRIQGFG 152
P + L + +QGFG
Sbjct: 141 PSQPLGTPPATGMGSQARPHSTLQGFG 167
>sp|Q5BBK9|VPS27_EMENI Vacuolar protein sorting-associated protein 27 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=vps27 PE=3 SV=1
Length = 715
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 35 EICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94
EI +L+RS V K+ + +RLE+K+P ++ L+L V GT F E+
Sbjct: 31 EISDLIRSKGVQ-PKDAMRSLKRRLENKNPNIQIATLKLTDTCVKNGGTHFLAEI----- 84
Query: 95 VVRQLFHYKGQLDPLKGDALNKAVRDM 121
R+ L +G LN +VRD+
Sbjct: 85 ASREFMDNLVSLLKAEGVPLNSSVRDL 111
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top2 PE=1 SV=2
Length = 1485
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 124 EAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSED---KKSFLSEVVGLGS 175
+AI + +ENK APV+ + +Q F N E PS D K++ ++V GS
Sbjct: 381 DAIDEVVKKENKKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGS 435
>sp|P15320|HLYA_SERMA Hemolysin OS=Serratia marcescens GN=shlA PE=1 SV=1
Length = 1608
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 253 RLNGDSSASYTGSKTREEKLLETIVTYGGVRL 284
RLNG + TGSK R +K E T+GG+R+
Sbjct: 570 RLNGQQGVTITGSKARGQKGGEVTATHGGLRI 601
>sp|Q8R5Z1|IF2_FUSNN Translation initiation factor IF-2 OS=Fusobacterium nucleatum
subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM
8532 / LMG 13131) GN=infB PE=3 SV=1
Length = 737
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 52 SDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA-VVRQLFHYKGQL 106
+DFILK +E VV++ +++IK+ + DF ++ +SA ++++LF KGQ+
Sbjct: 133 TDFILKTVEATPDVVEEDGIKIIKFRGELTLGDFAEKLGVNSAEIIKKLF-LKGQM 187
>sp|Q0CJV3|VPS27_ASPTN Vacuolar protein sorting-associated protein 27 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=vps27 PE=3
SV=1
Length = 556
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 35 EICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREM 89
EI +L+RS V KE + +RLE+K+P V+ L+L V GT F E+
Sbjct: 31 EISDLIRSKSVQ-PKEAMRSLKRRLENKNPNVQLATLKLTDTCVKNGGTHFLAEI 84
>sp|A1CEK1|VPS27_ASPCL Vacuolar protein sorting-associated protein 27 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1) GN=vps27 PE=3 SV=1
Length = 714
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 35 EICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREM 89
EI +L+RS V KE + +RLE+++P V+ L+L V GT F E+
Sbjct: 31 EISDLIRSKSVQ-PKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGTHFLAEI 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,952,625
Number of Sequences: 539616
Number of extensions: 11663922
Number of successful extensions: 26816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 26402
Number of HSP's gapped (non-prelim): 395
length of query: 706
length of database: 191,569,459
effective HSP length: 125
effective length of query: 581
effective length of database: 124,117,459
effective search space: 72112243679
effective search space used: 72112243679
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)