Query 005238
Match_columns 706
No_of_seqs 116 out of 139
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vdy_A Hypothetical protein (R 100.0 1.3E-45 4.3E-50 348.4 13.3 136 3-138 2-137 (140)
2 3onk_A Epsin-3, ENT3; helix, p 99.8 5.3E-21 1.8E-25 182.6 9.5 124 5-133 3-131 (150)
3 1xgw_A Epsin 4; ENTH, enthopro 99.8 2.4E-20 8.1E-25 182.2 10.0 141 3-153 24-175 (176)
4 1inz_A EPS15-interacting porte 99.8 3.6E-20 1.2E-24 176.4 10.7 125 4-133 14-142 (148)
5 1eyh_A Epsin; superhelix of he 99.8 8.9E-20 3E-24 173.0 9.7 119 10-133 2-124 (144)
6 3zym_A Phosphatidylinositol-bi 98.5 9E-08 3.1E-12 100.7 7.1 121 8-131 24-144 (310)
7 3zyl_A Phosphatidylinositol-bi 98.5 2.5E-07 8.6E-12 95.7 8.2 123 5-130 21-143 (271)
8 3g2s_A C-terminal fragment of 98.0 2.2E-05 7.4E-10 74.8 10.8 114 14-131 13-126 (149)
9 1juq_A ADP-ribosylation factor 98.0 2.5E-05 8.4E-10 75.8 10.6 114 14-131 15-128 (171)
10 1x5b_A Signal transducing adap 98.0 1.7E-05 5.7E-10 76.3 9.1 106 15-131 18-125 (163)
11 1mhq_A ADP-ribosylation factor 98.0 3.2E-05 1.1E-09 73.4 10.7 113 15-131 4-116 (148)
12 3ldz_A STAM-1, signal transduc 98.0 4.5E-05 1.5E-09 71.6 11.1 104 15-130 8-113 (140)
13 1elk_A Target of MYB1; superhe 97.7 0.00016 5.4E-09 69.1 10.7 110 14-130 18-129 (157)
14 3zyq_A Hepatocyte growth facto 97.7 6.6E-05 2.2E-09 75.5 8.0 108 15-131 11-118 (226)
15 1hx8_A Synapse-enriched clathr 97.7 6.2E-05 2.1E-09 78.5 7.6 115 14-130 25-149 (299)
16 1dvp_A HRS, hepatocyte growth 97.7 7.5E-05 2.6E-09 74.4 7.8 109 14-131 7-115 (220)
17 1eyh_A Epsin; superhelix of he 97.6 0.00058 2E-08 64.8 12.7 105 270-380 7-123 (144)
18 1xgw_A Epsin 4; ENTH, enthopro 97.6 0.00081 2.8E-08 65.9 13.5 108 268-381 34-154 (176)
19 1inz_A EPS15-interacting porte 97.5 0.00044 1.5E-08 65.9 10.8 108 269-382 24-143 (148)
20 3onk_A Epsin-3, ENT3; helix, p 97.4 0.0011 3.8E-08 63.4 11.9 107 269-381 12-131 (150)
21 1vdy_A Hypothetical protein (R 97.4 0.00053 1.8E-08 64.9 9.1 109 273-387 16-138 (140)
22 2qk2_A LP04448P; mini spindles 97.3 0.012 4E-07 57.3 17.5 74 304-379 132-205 (242)
23 3rru_A TOM1L1 protein; structu 97.1 0.0014 4.7E-08 62.6 8.9 115 10-131 12-130 (152)
24 1x5b_A Signal transducing adap 96.0 0.089 3.1E-06 50.4 13.5 109 271-384 18-130 (163)
25 1mhq_A ADP-ribosylation factor 95.4 0.17 5.9E-06 47.8 12.6 109 271-384 4-121 (148)
26 1juq_A ADP-ribosylation factor 95.2 0.13 4.6E-06 49.6 11.3 109 270-383 15-132 (171)
27 2qk1_A Protein STU2; STU2P, XM 95.2 0.069 2.4E-06 53.4 9.5 90 288-378 125-219 (249)
28 3g2s_A C-terminal fragment of 95.1 0.2 7E-06 47.5 12.1 110 269-383 12-130 (149)
29 3ldz_A STAM-1, signal transduc 95.1 0.13 4.4E-06 48.1 10.3 110 270-384 7-119 (140)
30 1elk_A Target of MYB1; superhe 94.9 0.26 8.9E-06 46.8 12.2 111 269-383 17-134 (157)
31 3zyq_A Hepatocyte growth facto 94.6 0.21 7.2E-06 50.0 11.2 110 271-384 11-123 (226)
32 3rru_A TOM1L1 protein; structu 94.2 0.53 1.8E-05 44.8 12.5 114 267-384 15-135 (152)
33 1dvp_A HRS, hepatocyte growth 94.1 0.37 1.3E-05 47.7 11.6 109 270-383 7-119 (220)
34 2qk2_A LP04448P; mini spindles 92.0 0.82 2.8E-05 44.2 10.4 73 48-131 131-205 (242)
35 2qk1_A Protein STU2; STU2P, XM 90.4 0.8 2.7E-05 45.7 8.7 73 48-131 144-220 (249)
36 1sz9_A PCF11 protein; RNA poly 89.2 2.2 7.5E-05 40.0 10.1 95 286-384 22-119 (144)
37 4flb_A Regulation of nuclear P 87.9 3.3 0.00011 37.5 10.1 106 267-379 5-112 (132)
38 4ffb_C Protein STU2; tubulin f 85.4 1.6 5.5E-05 43.4 7.3 73 48-131 137-212 (278)
39 2b4j_C PC4 and SFRS1 interacti 83.6 3.3 0.00011 37.1 7.6 71 48-131 8-84 (98)
40 1sz9_A PCF11 protein; RNA poly 82.5 4.7 0.00016 37.8 8.6 86 1-94 2-87 (144)
41 2of3_A ZYG-9; multifunctional 82.2 6.3 0.00022 40.6 10.2 97 271-375 132-232 (266)
42 1ibr_B P95, importin beta-1 su 81.7 2.3 8E-05 43.5 6.8 75 304-381 365-439 (462)
43 4ffb_C Protein STU2; tubulin f 81.1 1.5 5.3E-05 43.5 5.1 68 310-377 14-82 (278)
44 3d9j_A RNA-binding protein 16; 80.2 9.6 0.00033 35.6 9.9 94 286-379 21-119 (145)
45 1qgr_A Protein (importin beta 79.7 7.7 0.00026 43.5 10.7 88 291-381 352-439 (876)
46 3clj_A Protein NRD1; CTD-inter 78.8 10 0.00034 36.5 9.6 92 287-378 21-128 (157)
47 4fu3_A Regulation of nuclear P 78.5 2.6 8.9E-05 38.2 5.3 105 269-379 6-113 (135)
48 2km4_A Regulator of TY1 transp 77.5 20 0.00067 33.2 11.1 106 269-379 5-115 (142)
49 2iw3_A Elongation factor 3A; a 76.5 6.7 0.00023 47.3 9.4 90 289-382 117-207 (986)
50 1z9e_A PC4 and SFRS1 interacti 75.7 4.1 0.00014 38.1 5.7 71 48-131 8-84 (127)
51 1b3u_A Protein (protein phosph 74.7 9.1 0.00031 40.5 9.0 71 47-130 516-586 (588)
52 2bpt_A Importin beta-1 subunit 74.5 14 0.00048 41.3 10.8 87 290-379 354-440 (861)
53 2bpt_A Importin beta-1 subunit 73.3 10 0.00034 42.4 9.3 95 33-131 663-763 (861)
54 4fdd_A Transportin-1; heat rep 71.3 11 0.00036 43.2 9.1 87 289-379 343-429 (852)
55 3ltj_A Alpharep-4; protein eng 71.1 12 0.00039 34.5 7.8 31 49-79 13-43 (201)
56 3ltj_A Alpharep-4; protein eng 70.0 13 0.00045 34.1 7.9 25 354-378 111-135 (201)
57 3ul1_B Importin subunit alpha- 69.9 7.8 0.00027 42.0 7.3 72 306-377 402-476 (510)
58 1te4_A Conserved protein MTH18 68.9 8 0.00027 33.8 5.9 76 287-376 55-130 (131)
59 3ltm_A Alpha-REP4; protein eng 68.2 14 0.00047 34.3 7.7 30 50-79 19-48 (211)
60 4b8j_A Importin subunit alpha- 66.9 14 0.00048 39.4 8.4 72 51-133 415-498 (528)
61 4db6_A Armadillo repeat protei 65.1 17 0.00057 33.4 7.5 70 51-130 139-208 (210)
62 3ltm_A Alpha-REP4; protein eng 64.5 19 0.00066 33.3 7.9 29 304-332 49-77 (211)
63 1wa5_B Importin alpha subunit; 63.6 15 0.00053 39.2 7.9 73 51-132 429-511 (530)
64 2jdq_A Importin alpha-1 subuni 63.2 7.4 0.00025 39.8 5.2 74 305-378 361-442 (450)
65 3b2a_A TON_1937, putative unch 62.2 36 0.0012 35.3 9.8 80 301-384 30-109 (265)
66 3tpo_A Importin subunit alpha- 61.2 14 0.00047 40.1 7.1 74 306-379 421-498 (529)
67 4b8j_A Importin subunit alpha- 61.1 17 0.00059 38.7 7.7 74 306-379 415-496 (528)
68 4hxt_A De novo protein OR329; 60.4 19 0.00064 33.5 7.0 73 51-133 171-243 (252)
69 2of3_A ZYG-9; multifunctional 60.2 11 0.00038 38.8 5.8 70 49-131 166-236 (266)
70 1wa5_B Importin alpha subunit; 59.9 13 0.00044 39.8 6.6 75 306-380 429-511 (530)
71 1te4_A Conserved protein MTH18 59.5 12 0.00042 32.6 5.2 58 308-379 45-102 (131)
72 3b2a_A TON_1937, putative unch 59.1 12 0.00042 38.6 5.8 84 30-129 54-142 (265)
73 4db6_A Armadillo repeat protei 58.9 38 0.0013 31.0 8.7 69 305-378 138-208 (210)
74 2jdq_A Importin alpha-1 subuni 57.8 13 0.00045 37.9 5.9 73 50-131 318-390 (450)
75 3d9j_A RNA-binding protein 16; 56.7 73 0.0025 29.6 10.3 68 26-94 19-93 (145)
76 4hxt_A De novo protein OR329; 55.0 1E+02 0.0034 28.5 11.0 75 305-384 170-246 (252)
77 1xqr_A HSPBP1 protein; armadil 54.8 29 0.00099 35.6 7.9 75 51-132 210-288 (296)
78 4db8_A Armadillo-repeat protei 54.1 20 0.00069 33.7 6.1 70 51-130 181-250 (252)
79 1b3u_A Protein (protein phosph 53.4 30 0.001 36.5 7.9 69 304-378 401-469 (588)
80 1oyz_A Hypothetical protein YI 53.0 42 0.0014 32.4 8.3 66 301-378 155-220 (280)
81 3zyl_A Phosphatidylinositol-bi 50.8 46 0.0016 34.2 8.6 72 284-360 42-115 (271)
82 1oyz_A Hypothetical protein YI 50.2 61 0.0021 31.3 9.0 61 303-379 190-250 (280)
83 3zym_A Phosphatidylinositol-bi 48.7 40 0.0014 35.3 7.8 72 284-360 42-115 (310)
84 1qgr_A Protein (importin beta 48.5 41 0.0014 37.6 8.4 99 32-131 673-774 (876)
85 1xqr_A HSPBP1 protein; armadil 47.9 52 0.0018 33.7 8.5 72 51-132 168-239 (296)
86 3eyy_A Putative iron uptake re 46.3 34 0.0011 31.5 6.1 58 276-333 9-66 (145)
87 2vgl_B AP-2 complex subunit be 45.2 64 0.0022 35.5 9.3 75 46-133 117-191 (591)
88 1ibr_B P95, importin beta-1 su 44.4 66 0.0022 32.7 8.6 89 31-130 111-202 (462)
89 4db8_A Armadillo-repeat protei 39.0 94 0.0032 29.1 8.2 70 306-379 139-209 (252)
90 4flb_A Regulation of nuclear P 37.3 74 0.0025 28.5 6.8 64 32-96 23-90 (132)
91 4fu3_A Regulation of nuclear P 36.3 1.2E+02 0.0039 27.2 7.9 62 32-94 22-86 (135)
92 3ul1_B Importin subunit alpha- 35.9 1.1E+02 0.0037 33.0 9.1 71 51-132 402-479 (510)
93 2ii0_A SOS-1, SON of sevenless 35.3 70 0.0024 35.1 7.5 78 6-87 40-147 (490)
94 3ksy_A SOS-1, SON of sevenless 34.1 89 0.003 37.7 8.7 77 7-87 600-706 (1049)
95 2kzs_A Death-associated protei 33.5 35 0.0012 30.2 3.8 52 32-97 16-67 (94)
96 1u6g_C TIP120 protein, CAND1; 32.1 74 0.0025 37.9 7.5 72 304-379 132-204 (1230)
97 1u6g_C TIP120 protein, CAND1; 31.1 1.5E+02 0.0053 35.2 10.0 89 31-130 456-547 (1230)
98 3tjz_B Coatomer subunit gamma; 30.1 63 0.0022 34.4 5.9 71 26-100 115-185 (355)
99 3grl_A General vesicular trans 30.0 78 0.0027 36.7 6.9 75 51-133 123-197 (651)
100 1hx8_A Synapse-enriched clathr 29.8 1.9E+02 0.0066 29.7 9.3 64 284-351 37-102 (299)
101 1w63_A Adapter-related protein 28.7 1.2E+02 0.004 33.8 8.0 81 30-130 90-170 (618)
102 4fdd_A Transportin-1; heat rep 28.4 84 0.0029 35.8 6.9 75 46-131 355-429 (852)
103 2fu4_A Ferric uptake regulatio 28.2 66 0.0023 26.0 4.5 55 278-332 9-65 (83)
104 1v54_E Cytochrome C oxidase po 27.4 2.7E+02 0.0092 25.4 8.5 51 276-326 33-89 (109)
105 1mzb_A Ferric uptake regulatio 27.4 65 0.0022 29.0 4.7 57 277-333 9-67 (136)
106 2f31_A Diaphanous protein homo 26.3 2E+02 0.0068 28.2 8.4 72 50-131 47-125 (233)
107 3oc3_A Helicase MOT1, MOT1; re 25.9 1.5E+02 0.005 34.7 8.0 68 306-377 175-255 (800)
108 2fe3_A Peroxide operon regulat 25.2 78 0.0027 28.9 4.8 59 275-333 11-70 (145)
109 3tpo_A Importin subunit alpha- 25.0 1.8E+02 0.0061 31.3 8.4 71 51-132 421-498 (529)
110 3zed_D Capsid protein VP3; vir 24.1 1.7E+02 0.0058 29.7 7.2 79 48-128 11-95 (242)
111 1jdh_A Beta-catenin; beta-cate 24.0 1.7E+02 0.0057 30.5 7.7 65 307-377 462-528 (529)
112 2z6h_A Catenin beta-1, beta-ca 23.5 1.8E+02 0.0063 32.0 8.3 70 306-381 458-529 (644)
113 4ets_A Ferric uptake regulatio 22.5 72 0.0025 29.9 4.1 61 273-333 20-83 (162)
114 4gmo_A Putative uncharacterize 22.2 1.9E+02 0.0067 32.6 8.3 66 55-133 39-107 (684)
115 1wq6_A AML1-ETO; NHR2, oncopro 20.6 2.1E+02 0.0072 24.2 6.0 56 26-94 12-67 (72)
116 2xig_A Ferric uptake regulatio 20.5 1.2E+02 0.0042 27.8 5.2 61 273-333 14-75 (150)
117 2z6g_A B-catenin; FULL-length, 20.4 2E+02 0.0067 33.1 8.0 71 51-134 594-666 (780)
No 1
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=1.3e-45 Score=348.37 Aligned_cols=136 Identities=79% Similarity=1.164 Sum_probs=131.1
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC
Q 005238 3 SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG 82 (706)
Q Consensus 3 ~~~~~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs 82 (706)
++|||||+|||.++|++||+||+||||||+|+|||++|+.+++++|+|||+||++||+++++|||+||||||+|||.+|+
T Consensus 2 ~~~~~~~~~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 2 SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp CCCCSCTHHHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCCC
Q 005238 83 TDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAP 138 (706)
Q Consensus 83 ~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~~~p~p 138 (706)
+.|++|+|+|+++||+|++|+|+|||++|+++|+.||++||||+++||+++..++|
T Consensus 82 ~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 82 SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP 137 (140)
T ss_dssp HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999997765443
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.83 E-value=5.3e-21 Score=182.55 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=110.8
Q ss_pred hhhhhhhhh-hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCC----CchHHHHHHHHHHHHh
Q 005238 5 RRAVESYWR-SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS----PVVKQKALRLIKYSVG 79 (706)
Q Consensus 5 ~~~v~~y~~-~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ks----phVKlKaLKILkyLc~ 79 (706)
.-.|-+|+. ..+|+.||++|+|+|++.+|.|||+.||... .+.+||++|.+||.++. +|| +|||.+|.||+.
T Consensus 3 ~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~--~~~eIm~~l~kRL~d~~~k~WR~v-yKaL~lLeyLl~ 79 (150)
T 3onk_A 3 MSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFR--EREEILSMIFRRFTEKAGSEWRQI-YKALQLLDYLIK 79 (150)
T ss_dssp -----CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHH--HHHHHHHHHHHHHHSCCSTTHHHH-HHHHHHHHHHHH
T ss_pred hhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHcccccchHHHH-HHHHHHHHHHHH
Confidence 456788999 9999999999999999999999999999863 47999999999998753 778 999999999999
Q ss_pred cCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005238 80 KSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (706)
Q Consensus 80 ~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~ 133 (706)
+|++.|+.|++.|.+.|+++.+|.... + .|.+.+..||+.|++++++|-+++
T Consensus 80 nGse~vv~~~r~~~~~i~~L~~F~~~d-~-~G~D~G~~VR~kak~l~~LL~D~e 131 (150)
T 3onk_A 80 HGSERFIDDTRNSINLIRILETFHYID-S-QGRDQGINVRTRVKALIELLSDDN 131 (150)
T ss_dssp HSCHHHHHHHHTTHHHHHGGGGCCCBC-T-TSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhcccccC-C-CCCchHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999999999984 4 899999999999999999998854
No 3
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.82 E-value=2.4e-20 Score=182.15 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=113.1
Q ss_pred hhhhhhhhhhh-hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhh-ccC--C-CchHHHHHHHHHHH
Q 005238 3 SSRRAVESYWR-SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRL-EHK--S-PVVKQKALRLIKYS 77 (706)
Q Consensus 3 ~~~~~v~~y~~-~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL-~~k--s-phVKlKaLKILkyL 77 (706)
+.+-.|-+|+. ..+|+.||++|+|+|++.+|.|||+.||... .+.+||++|.+|| +++ . +|| +|||.||.||
T Consensus 24 ~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~--~~~~Im~~L~kRl~~~~~k~WR~v-yKaL~LLeYL 100 (176)
T 1xgw_A 24 KATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYE--QFPELMNMLWSRMLKDNKKNWRRV-YKSLLLLAYL 100 (176)
T ss_dssp ----CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTT--THHHHHHHHHHHHHSSCTTCHHHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChh--hHHHHHHHHHHHHhccCCchhHHH-HHHHHHHHHH
Confidence 34556778888 8999999999999999999999999999974 4799999999996 543 3 777 9999999999
Q ss_pred HhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCC------CCCCCCCcccccCcccc
Q 005238 78 VGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEEN------KPAPVEDLSLNKRIQGF 151 (706)
Q Consensus 78 c~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~~------~p~p~~g~g~~~riqGF 151 (706)
+.+|++.|+.|++.+++.||+|.+|.+. |+ .|.+.+..||+.|++++++|-+++- ++.- ...++.||
T Consensus 101 l~nGse~vv~~~r~~i~~I~~L~~F~y~-D~-~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k-----~r~k~~G~ 173 (176)
T 1xgw_A 101 IRNGSERVVTSAREHIYDLRSLENYHFV-DE-HGKDQGINIRQKVKELVEFAQDDDRLREERKKAKK-----NKDKYVGV 173 (176)
T ss_dssp HHHSCHHHHHHHHHTHHHHHGGGGCCCB-CT-TSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------------
T ss_pred HHhCCHHHHHHHHHhHHHHHhhccCeeE-CC-CCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHhhccCC
Confidence 9999999999999999999999999997 55 8999999999999999999999653 1211 23678888
Q ss_pred CC
Q 005238 152 GN 153 (706)
Q Consensus 152 Gn 153 (706)
|+
T Consensus 174 ~s 175 (176)
T 1xgw_A 174 SS 175 (176)
T ss_dssp --
T ss_pred CC
Confidence 85
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.81 E-value=3.6e-20 Score=176.40 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=114.0
Q ss_pred hhhhhhhhhh-hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCC---CchHHHHHHHHHHHHh
Q 005238 4 SRRAVESYWR-SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS---PVVKQKALRLIKYSVG 79 (706)
Q Consensus 4 ~~~~v~~y~~-~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ks---phVKlKaLKILkyLc~ 79 (706)
.+-.|-+|+. ..+|+.||++|+|+|++.+|+|||++||.. ..+.+||++|.+||.+++ +|| +|||.+|.||+.
T Consensus 14 ~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~--~~~~eIm~~l~kRL~d~~k~WR~v-yKaL~lleyLl~ 90 (148)
T 1inz_A 14 MKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV--VAFSEIMSMIWKRLNDHGKNWRHV-YKAMTLMEYLIK 90 (148)
T ss_dssp CCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS--HHHHHHHHHHHHGGGCCSSCTHHH-HHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH--hhHHHHHHHHHHHHccCCcchhHh-hHHHHHHHHHHH
Confidence 3445667887 889999999999999999999999999996 347999999999999864 677 999999999999
Q ss_pred cCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005238 80 KSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (706)
Q Consensus 80 ~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~ 133 (706)
+|++.|+.+++.+.+.|+++.+|...+ + .|.+.+..||+.|++|+++|-+++
T Consensus 91 nGse~vv~~~r~~~~~I~~L~~F~y~d-~-~g~D~G~nVR~kAk~l~~LL~D~e 142 (148)
T 1inz_A 91 TGSERVSQQCKENMYAVQTLKDFQYVD-R-DGKDQGVNVREKAKQLVALLRDED 142 (148)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHHCCCCC-S-SCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred hCCHHHHHHHHHhHHHHHhhcceeeeC-C-CCcCchHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999984 4 899999999999999999999865
No 5
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.80 E-value=8.9e-20 Score=172.98 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=109.6
Q ss_pred hhhh-hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCC---CchHHHHHHHHHHHHhcCChhH
Q 005238 10 SYWR-SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS---PVVKQKALRLIKYSVGKSGTDF 85 (706)
Q Consensus 10 ~y~~-~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ks---phVKlKaLKILkyLc~~Gs~~F 85 (706)
+|+. ..+|+.||++|+|+|++.+|.|||+.||.. ..+.+||++|.+||.+++ +|| +|||.+|.||+.+|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~--~~~~~Im~~l~kRL~d~~k~Wr~v-yKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV--VAFSEIMSMIWKRLNDHGKNWRHV-YKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH--HHHHHHHHHHHHHHSCCGGGHHHH-HHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH--hhHHHHHHHHHHHHccCCcchHHH-hHHHHHHHHHHHhCCHHH
Confidence 5666 789999999999999999999999999985 357999999999999864 678 999999999999999999
Q ss_pred HHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005238 86 RREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (706)
Q Consensus 86 ~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFsd~ 133 (706)
+.+++.+.+.|++|.+|...+ + .|.+.+..||..|++|+++|-+++
T Consensus 79 v~~~~~~~~~i~~L~~F~y~d-~-~g~D~G~~VR~kak~l~~Ll~D~~ 124 (144)
T 1eyh_A 79 SQQCKENMYAVQTLKDFQYVD-R-DGKDQGVNVREKAKQLVALLRDED 124 (144)
T ss_dssp HHHHHHTHHHHHGGGGCCCBC-T-TSCBCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhhHHHhhhccceeeC-C-CccchHHHHHHHHHHHHHHHCCHH
Confidence 999999999999999999874 4 899999999999999999998853
No 6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.53 E-value=9e-08 Score=100.66 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=101.9
Q ss_pred hhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHH
Q 005238 8 VESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRR 87 (706)
Q Consensus 8 v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r 87 (706)
|.+=.-...|.|||+.++.||-.--+++|...|+.+..+ +.+++..|.+||+.++..|=+|+|-+|-+|++.|++.|..
T Consensus 24 ~~~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~-~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~l~ 102 (310)
T 3zym_A 24 VTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVN-IPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQ 102 (310)
T ss_dssp CHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSC-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCc-HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 556222889999999999999998899999999988654 5799999999999888777799999999999999999999
Q ss_pred HHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 88 EMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 88 ~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
+++++.. |.++.+|++... ..|.+....||..|+-|.+.+..
T Consensus 103 ~~~~~~~-~~~Ls~f~d~~~-~~g~~~~~~Ir~Ya~yL~~Rl~~ 144 (310)
T 3zym_A 103 YLASRNT-LFNLSNFLDKSG-LQGYDMSTFIRRYSRYLNEKAVS 144 (310)
T ss_dssp HHHHCSC-CCCCTTCCCCSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-eeecccccCCCC-cCcccccHHHHHHHHHHHHHHHH
Confidence 9998874 558888885432 24667789999999999988764
No 7
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=98.46 E-value=2.5e-07 Score=95.67 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=103.2
Q ss_pred hhhhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChh
Q 005238 5 RRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTD 84 (706)
Q Consensus 5 ~~~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~ 84 (706)
|-.|.+=.-...|.|||+.++.||-.--+++|...|+.++.. +.+++..|.+||+.++..|=+|+|-+|-+|++.|++.
T Consensus 21 ~~~~~~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~-~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~ 99 (271)
T 3zyl_A 21 QHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVN-IPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNER 99 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSC-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhcccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCc-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHH
Confidence 334556223889999999999999998899999999987654 5899999999999888777799999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 85 FRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 85 F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
|.++++++.. |.++.+|++... ..|.+....||.-|+-|.+.+.
T Consensus 100 ~l~~~~~~~~-~~~Ls~f~d~~~-~~~~~~s~~Ir~Ya~yL~eRl~ 143 (271)
T 3zyl_A 100 FIQYLASRNT-LFNLSNFLDKSG-LQGYDMSTFIRRYSRYLNEKAV 143 (271)
T ss_dssp HHHHHHHCSC-CCCCTTCCCCSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-eechhccCCCCC-CCcccccHHHHHHHHHHHHHHH
Confidence 9999988874 678888886533 2566777999999999999874
No 8
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=98.04 E-value=2.2e-05 Score=74.76 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=91.7
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhH
Q 005238 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (706)
Q Consensus 14 ~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns 93 (706)
..+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.+|..|+.++...|.+++...-
T Consensus 13 ~~~IekATs~~l~~~dw~~ileicD~I~~~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 13 EARINRATNPLNKELDWASINGFCEQLNEDF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 3789999999988777788999999999987 467999999999999999999999999999999999999999886554
Q ss_pred HHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 94 AVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 94 ~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
++.++...-. +.+.|+.....||+..-+++..--.
T Consensus 92 -Fl~eL~kl~~--~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 92 -FLNELIKVVS--PKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp -HHHHHHHHHC--TTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHc--ccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3333332222 2234556678899998888876543
No 9
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=98.01 E-value=2.5e-05 Score=75.78 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=87.8
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhH
Q 005238 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (706)
Q Consensus 14 ~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns 93 (706)
..+|.+||+..-.-+---+.-|||.+...... ..++.+..|.|||+++.+||-+-||.||..|+.+++..|++++...
T Consensus 15 ~~~IekATs~~l~~~Dw~~ileicD~I~~~~~-~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~- 92 (171)
T 1juq_A 15 ESWLNKATNPSNRQEDWEYIIGFCDQINKELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF- 92 (171)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-
Confidence 48999999987655555566799999999874 5799999999999999999999999999999999999999988765
Q ss_pred HHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 94 AVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 94 ~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
.++.++...-.+ -..|......||+.+-+++..--.
T Consensus 93 ~Fl~eL~kl~~~--k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 93 RFLNELIKVVSP--KYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHCC--CCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 233332222211 112445667899999888877654
No 10
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=98.00 E-value=1.7e-05 Score=76.35 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=81.9
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhH-
Q 005238 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS- 93 (706)
Q Consensus 15 ~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns- 93 (706)
.+|.+||+....-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.||..|+.++...|++++...-
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~F 96 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTP-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDF 96 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 899999998765555556678999999887 467999999999999999999999999999999999999998886532
Q ss_pred -HHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 94 -AVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 94 -~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
..+..+.. ... ...||+.+.+++..--.
T Consensus 97 l~el~~l~~--~~~--------~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 97 ATEVRAVIK--NKA--------HPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHH--TTC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--cCC--------CHHHHHHHHHHHHHHHH
Confidence 22222222 111 23688888888776544
No 11
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.98 E-value=3.2e-05 Score=73.36 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=87.5
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH
Q 005238 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (706)
Q Consensus 15 ~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~ 94 (706)
.+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.+|..|+.+++..|.+++... .
T Consensus 4 ~~iekATs~~l~~~dw~~~leicD~I~~~~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~ 81 (148)
T 1mhq_A 4 LWLNKATDPSMSEQDWSAIQNFCEQVNTDP-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-R 81 (148)
T ss_dssp HHHHHHHCTTCSSCCHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-H
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-H
Confidence 689999998776555566779999999887 46799999999999999999999999999999999999999998654 4
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 95 ~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
++.++...-.+ -..|......||+.+-+++..--.
T Consensus 82 Fl~eL~kl~~~--k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 82 FLNELIKVLSP--KYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHTTCC--STTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44444432221 112334567899888888776543
No 12
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.96 E-value=4.5e-05 Score=71.55 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=82.7
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHH--HHh
Q 005238 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREM--QRH 92 (706)
Q Consensus 15 ~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~l--qrn 92 (706)
.+|.+||+..-.-.---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.+|..|+.++...|.+++ ++-
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~F 86 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQSR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDF 86 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTTST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 789999999877666777889999999887 46799999999999999999999999999999999999999887 333
Q ss_pred HHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 93 SAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 93 s~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
...++.+.. + ....||+...+++...-
T Consensus 87 l~el~~l~~-~----------~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 87 ASEVSNVLN-K----------GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHH-H----------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-c----------CCHHHHHHHHHHHHHHH
Confidence 333333331 1 12468888888877653
No 13
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.73 E-value=0.00016 Score=69.06 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=81.5
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhc-cCCCchHHHHHHHHHHHHhcCChhHHHHHHHh
Q 005238 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE-HKSPVVKQKALRLIKYSVGKSGTDFRREMQRH 92 (706)
Q Consensus 14 ~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~-~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrn 92 (706)
..+|.+||+..-.-+---+.-|||.+..... ...++.+..|.|||+ ++.+||-+-||.||..|+.++...|.+++...
T Consensus 18 ~~~IekATs~~l~~~Dw~~~leicD~I~~~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 18 GQRIEKATDGSLQSEDWALNMEICDIINETE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 5899999998765555556679999999886 467999999999998 47899999999999999999999999988653
Q ss_pred HHHHHH-hhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 93 SAVVRQ-LFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 93 s~~Ik~-~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
.++.+ +...-.+ ++ .+...||+.+-+++..--
T Consensus 97 -~fl~e~Lvk~~~~----k~-~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 97 -DFVESVLVRTILP----KN-NPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp -HHHHHHTHHHHST----TT-CCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcc----CC-CCcHHHHHHHHHHHHHHH
Confidence 23333 2111111 11 123578888877776543
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.70 E-value=6.6e-05 Score=75.46 Aligned_cols=108 Identities=24% Similarity=0.278 Sum_probs=84.6
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH
Q 005238 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (706)
Q Consensus 15 ~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~ 94 (706)
.+|.+||+..-..+---+.-||+.+...... ..++.+..|.|||+++.|||-+-||.||..|+.++...|.+++...-
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~~~~-~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~- 88 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQGDT-QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ- 88 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH-
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH-
Confidence 6999999998877777788899999988764 57999999999999999999999999999999999999999986553
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 95 ~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
++.++...-+ ......||+.+-+++...-.
T Consensus 89 fl~~l~~l~~-------~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 89 TMEELKDLLK-------RQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHH
Confidence 2222222111 12336688888887776543
No 15
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=97.67 E-value=6.2e-05 Score=78.53 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=93.2
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhH
Q 005238 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (706)
Q Consensus 14 ~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns 93 (706)
...|.|||+.++.||----.++|...|.++..+ +.+++..|.+|+..++..|=+|+|=+|-+|++.|++.|..+++++.
T Consensus 25 ~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~-~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l~~~~ 103 (299)
T 1hx8_A 25 AKSVCKATTEECIGPKKKHLDYLVHCANEPNVS-IPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSN 103 (299)
T ss_dssp HHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCC-HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence 578999999999999888889999999888765 4789999999998888888899999999999999999999997753
Q ss_pred HHHHHhhcccCCCC--------C--CCCchhhHHHHHHHHHHHHHhh
Q 005238 94 AVVRQLFHYKGQLD--------P--LKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 94 ~~Ik~~~~f~GppD--------p--l~Gd~l~q~VR~aAqEll~aLF 130 (706)
-|.++.+|+-... + ..|.+....||.-|+=|.+.+.
T Consensus 104 -~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~~ 149 (299)
T 1hx8_A 104 -STFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSL 149 (299)
T ss_dssp -CCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 3555566753221 1 1344577899999999999753
No 16
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.66 E-value=7.5e-05 Score=74.36 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=83.1
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhH
Q 005238 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (706)
Q Consensus 14 ~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns 93 (706)
..+|.+||+..-.-+---+.-||+.+...... ..++.+..|.|||+++.|||-+-||.||..|+.++...|+.++...-
T Consensus 7 ~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~-~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 7 CKNLENATSHLRLEPDWPSILLICDEINQKDV-TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 37899999987655555567889999998764 57999999999999999999999999999999999999988876543
Q ss_pred HHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 94 AVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 94 ~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
++.++...... ..+..||+.+.|++...-.
T Consensus 86 -fl~~l~~l~~~-------~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 86 -NCEMFSSFLES-------TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp -HHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHH
Confidence 33333322211 1245788888877766543
No 17
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.62 E-value=0.00058 Score=64.82 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHhccCchhHHHHHH
Q 005238 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS--PLWQVRMKAICVLESILRKKDDEKFSIILS 346 (706)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~KL~~--~~WQvrlKALcvLEaLl~s~~~d~~~~v~~ 346 (706)
...|++ +|. .-..-|+...|++-+..+-. -++..|...|..+|.+ ..|.+-+|||.+||.|++.+.. .|..
T Consensus 7 E~~Vre-AT~-~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse----~vv~ 80 (144)
T 1eyh_A 7 EIKVRE-ATS-NDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE----RVSQ 80 (144)
T ss_dssp HHHHHH-HTC-SSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCH----HHHH
T ss_pred HHHHHH-HhC-CCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCH----HHHH
Confidence 445666 555 33467888888888877644 3467899999999965 5899999999999999998763 5678
Q ss_pred HHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhccc
Q 005238 347 YFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEE 380 (706)
Q Consensus 347 yF~eN~~~L~r~~~s~Q---------~sLReKA~KVL~lLg~~ 380 (706)
.+++|...|..|.+-.- ..||+||+.|+.||.-+
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~ 123 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDE 123 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCH
Confidence 89999988888776321 26899999999999754
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.58 E-value=0.00081 Score=65.88 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=86.2
Q ss_pred hHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-CCHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHhccCchhHHH
Q 005238 268 REEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKL-Q--SPLWQVRMKAICVLESILRKKDDEKFSI 343 (706)
Q Consensus 268 ~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~KL-~--~~~WQvrlKALcvLEaLl~s~~~d~~~~ 343 (706)
.....|++ +|..- .--|+...|..-.+.+-. -++..|...|.++| + ...|..-+|||.+||.||+.+.. .
T Consensus 34 ~~E~kVre-ATnnd-~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse----~ 107 (176)
T 1xgw_A 34 EIESKVRE-ATNDD-PWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSE----R 107 (176)
T ss_dssp HHHHHHHH-HTCSC-SSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCH----H
T ss_pred HHHHHHHH-HcCCC-CCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCH----H
Confidence 44555777 66543 467899999988887654 57899999999996 4 58999999999999999998863 6
Q ss_pred HHHHHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhcccc
Q 005238 344 ILSYFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEEQ 381 (706)
Q Consensus 344 v~~yF~eN~~~L~r~~~s~Q---------~sLReKA~KVL~lLg~~~ 381 (706)
|.+.+++|...|+.|.+-.- ..||+||+.|+.||.-+.
T Consensus 108 vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e 154 (176)
T 1xgw_A 108 VVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDD 154 (176)
T ss_dssp HHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHH
Confidence 67888999988888775522 359999999999998654
No 19
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.54 E-value=0.00044 Score=65.91 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=83.4
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHhccCchhHHHHH
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS--PLWQVRMKAICVLESILRKKDDEKFSIIL 345 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~KL~~--~~WQvrlKALcvLEaLl~s~~~d~~~~v~ 345 (706)
-...|++ +|..- ..-|+...|++-+..+-. -++..|...|..+|.+ ..|.+-+|||.+||.|++.+.. .|.
T Consensus 24 ~E~~Vre-AT~~d-~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse----~vv 97 (148)
T 1inz_A 24 AEIKVRE-ATSND-PWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE----RVS 97 (148)
T ss_dssp HHHHHHH-HSCCC-SCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCH----HHH
T ss_pred HHHHHHH-HhCCC-CCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCH----HHH
Confidence 3455666 56533 356777788888877755 3467899999999965 5899999999999999998763 567
Q ss_pred HHHHhhhHHHhhhhcC--C--C-----hhHHHHHHHHHHHhccccc
Q 005238 346 SYFCENNDVVVKCSES--P--Q-----SSLREKANKVLSLLGEEQA 382 (706)
Q Consensus 346 ~yF~eN~~~L~r~~~s--~--Q-----~sLReKA~KVL~lLg~~~~ 382 (706)
..+++|...|+.|.+- . + ..||+||+.|+.||.-+..
T Consensus 98 ~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~ 143 (148)
T 1inz_A 98 QQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDR 143 (148)
T ss_dssp HHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHH
Confidence 8889998888887751 1 1 2789999999999987653
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.42 E-value=0.0011 Score=63.36 Aligned_cols=107 Identities=8% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHhccCchhHHHH
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS---PLWQVRMKAICVLESILRKKDDEKFSII 344 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~KL~~---~~WQvrlKALcvLEaLl~s~~~d~~~~v 344 (706)
-...|++ +|. .-.--|+...|++-.+..-. -++..|.+.|..+|.+ ..|..-+|||.+||.|++.+.. .|
T Consensus 12 ~E~kVre-AT~-nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse----~v 85 (150)
T 3onk_A 12 MEGKVRE-ATN-NEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSE----RF 85 (150)
T ss_dssp HHHHHHH-HTS-SCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCH----HH
T ss_pred HHHHHHH-HhC-CCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCH----HH
Confidence 3445666 565 34467888888887776543 3457899999999953 3899999999999999998863 56
Q ss_pred HHHHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhcccc
Q 005238 345 LSYFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEEQ 381 (706)
Q Consensus 345 ~~yF~eN~~~L~r~~~s~Q---------~sLReKA~KVL~lLg~~~ 381 (706)
.+.+++|...|+.|.+-.- ..||+||+.|+.||.-+.
T Consensus 86 v~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e 131 (150)
T 3onk_A 86 IDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDN 131 (150)
T ss_dssp HHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHH
Confidence 7889999998888776211 389999999999998654
No 21
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.39 E-value=0.00053 Score=64.91 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=82.0
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHHhhC--C-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 005238 273 LETIVTYGGVRLQPTRDAIQVFLVEAAKL--D-ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFC 349 (706)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c~~L--d-~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~ 349 (706)
|.+ .|.--. --|+--.+++..+..-.- + +..|.+.|.+||.+..|-+.+|||-+|+.|++.+.. .+.+..+
T Consensus 16 V~~-ATs~d~-~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~----~f~~~~r 89 (140)
T 1vdy_A 16 IDA-VTSDED-KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS----EFRREMQ 89 (140)
T ss_dssp HHH-TTCSCS-SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH----HHHHHHH
T ss_pred HHH-HhcCCC-CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH----HHHHHHH
Confidence 666 444222 334455555555555443 3 589999999999999999999999999999988763 4578889
Q ss_pred hhhHHHhhhhcCC-----------ChhHHHHHHHHHHHhcccccCCccc
Q 005238 350 ENNDVVVKCSESP-----------QSSLREKANKVLSLLGEEQAGGLVS 387 (706)
Q Consensus 350 eN~~~L~r~~~s~-----------Q~sLReKA~KVL~lLg~~~~~~~~~ 387 (706)
+|...|+.|.+-. -..||++|+.++.+|-.+.....++
T Consensus 90 ~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~~ 138 (140)
T 1vdy_A 90 RNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGPS 138 (140)
T ss_dssp HTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCCC
T ss_pred HhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 9999999887421 1579999999999999887776543
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.27 E-value=0.012 Score=57.28 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 304 e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
+.|++.|...|++..|++|..+|..|..++.....+. ....|+..-.+.|..|.+.....||+.|...|..|..
T Consensus 132 ~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~--~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA--LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC--ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3566667777888999999999999999887754332 1246777777899999999999999999998887654
No 23
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.12 E-value=0.0014 Score=62.61 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=87.3
Q ss_pred hhhh--hhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhcc-CCCchHHHHHHHHHHHHhcCChhHH
Q 005238 10 SYWR--SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEH-KSPVVKQKALRLIKYSVGKSGTDFR 86 (706)
Q Consensus 10 ~y~~--~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~-ksphVKlKaLKILkyLc~~Gs~~F~ 86 (706)
.|+. ..+|.|||+..-..+---+.-|||.+..... ...++.+..|.|||++ +.++|-+-||.+|.-|+.++...|.
T Consensus 12 ~~~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh 90 (152)
T 3rru_A 12 PYATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQ 90 (152)
T ss_dssp GGGSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 4544 6899999999988777788899999999986 4679999999999995 4677878899999999999999999
Q ss_pred HHHHHhHHHHHH-hhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 87 REMQRHSAVVRQ-LFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 87 r~lqrns~~Ik~-~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
+++...- ++.+ +...-- ++ . .....||+.+.+++...-.
T Consensus 91 ~eiask~-Fl~e~L~kl~~--~~--~-~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 91 SLIVKKE-FVKENLVKLLN--PR--Y-NLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHSSHH-HHTTTTGGGGS--GG--G-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhhH-hHHHHHHHHhc--CC--C-CCcHHHHHHHHHHHHHHHH
Confidence 9987543 3333 222111 11 0 1335799888888877654
No 24
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=96.04 E-value=0.089 Score=50.43 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHH-HH
Q 005238 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-SY 347 (706)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~-~y 347 (706)
.+|+. +|. ..-..|--+.+-.++..+.. -.+...+.+|.+||....-.++++||.+||++++..+......|. .=
T Consensus 18 ~~Iek-ATs-~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 18 QDVEK-ATN-EYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp HHHHH-HTC-TTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 78888 444 22345555555555555544 245678899999998777789999999999999988765443333 22
Q ss_pred HHhhhHHHhhhh-cCCChhHHHHHHHHHHHhcccccCC
Q 005238 348 FCENNDVVVKCS-ESPQSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 348 F~eN~~~L~r~~-~s~Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
|. +.+.++. ...+..||+|+..++..|.......
T Consensus 96 Fl---~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 96 FA---TEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HH---HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH---HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33 2233333 3366799999999999999876643
No 25
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.45 E-value=0.17 Score=47.79 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhhCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHH-HH
Q 005238 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAKLD--ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-SY 347 (706)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~Ld--~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~-~y 347 (706)
.+|+. +|. ..-..|--+.+-.++..++.-. +...+.+|..||++..-.++++||.+||++++..+......|. .=
T Consensus 4 ~~iek-ATs-~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 4 LWLNK-ATD-PSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHH-HHC-TTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 45666 343 2223555555555655555533 5778899999999888889999999999999998865443332 22
Q ss_pred HHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccCC
Q 005238 348 FCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 348 F~eN~~~L~r~~~------s~Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
|. +.|.++.. ..+..||+|+..++..|.....+.
T Consensus 82 Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (148)
T 1mhq_A 82 FL---NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 121 (148)
T ss_dssp HH---HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HH---HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 22 34555443 246899999999999998877543
No 26
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.20 E-value=0.13 Score=49.60 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=74.6
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhhC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHH-
Q 005238 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILS- 346 (706)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~L--d~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~- 346 (706)
..+|+. +|... -..|--..+..++..++.- .+...+.+|.+||.+.+-.++++||.+||++++..+......|..
T Consensus 15 ~~~Iek-ATs~~-l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 15 ESWLNK-ATNPS-NRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp HHHHHH-HTCTT-CSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred HHHHHH-HcCCC-CCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 567777 44312 2345555555555555442 446788999999988888899999999999999877544323322
Q ss_pred HHHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccC
Q 005238 347 YFCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAG 383 (706)
Q Consensus 347 yF~eN~~~L~r~~~------s~Q~sLReKA~KVL~lLg~~~~~ 383 (706)
=|. +.|.++.. ..+..||+|+..++..|......
T Consensus 93 ~Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 93 RFL---NELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHH---HHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHH---HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 233 44555543 34678999999999999987764
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.069 Score=53.43 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhCC----HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHH-HhhhHHHhhhhcCC
Q 005238 288 RDAIQVFLVEAAKLD----ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYF-CENNDVVVKCSESP 362 (706)
Q Consensus 288 reeLq~Fl~~c~~Ld----~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF-~eN~~~L~r~~~s~ 362 (706)
...|..|++.|.... .+.|.+.|..-|+++.||+|.-+|..|..++...... ...+..|+ .+-.+.|.+|....
T Consensus 125 ~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~-~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 125 RKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG-YSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC-SHHHHHHHTTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHhcCC
Confidence 456777777763221 4578888888899999999999999999999876531 12345688 88889999999999
Q ss_pred ChhHHHHHHHHHHHhc
Q 005238 363 QSSLREKANKVLSLLG 378 (706)
Q Consensus 363 Q~sLReKA~KVL~lLg 378 (706)
+..||++|...|..|.
T Consensus 204 ~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 204 QPAIRTIGFESFAILI 219 (249)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 28
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.15 E-value=0.2 Score=47.47 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhhCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHH-H
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLD--ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII-L 345 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~Ld--~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v-~ 345 (706)
=..+|+. +|. ..-..|--+.+-.|...+..-. +...+.+|..||.+..-.++++||.+||++++..+..+...| .
T Consensus 12 ~~~~Iek-ATs-~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias 89 (149)
T 3g2s_A 12 LEARINR-ATN-PLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK 89 (149)
T ss_dssp HHHHHHH-HSC-TTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS
T ss_pred HHHHHHH-HcC-CCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 3567777 444 2224455555555555555432 578889999999988888999999999999999887554323 2
Q ss_pred HHHHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccC
Q 005238 346 SYFCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAG 383 (706)
Q Consensus 346 ~yF~eN~~~L~r~~~------s~Q~sLReKA~KVL~lLg~~~~~ 383 (706)
.=|. +.|.++.. ..+..||+|...++..|.....+
T Consensus 90 ~~Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 90 FRFL---NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHH---HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH---HHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2333 33554443 36789999999999999887654
No 29
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.05 E-value=0.13 Score=48.05 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=74.5
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhhC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHH-HH
Q 005238 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII-LS 346 (706)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~L--d~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v-~~ 346 (706)
..+|+. +|. ..-..|--+-+-.++..+..- .+...+.+|.+||....-.++++||.+||++++..+......| ..
T Consensus 7 d~~iek-AT~-~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~ 84 (140)
T 3ldz_A 7 DQDVEK-ATS-EMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR 84 (140)
T ss_dssp HHHHHH-HTC-TTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHH-HcC-CCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 466777 454 233455555555555555432 3577889999999877778999999999999999886544333 12
Q ss_pred HHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcccccCC
Q 005238 347 YFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 347 yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
=|. +.+.++....+..||+|...++..|.....+.
T Consensus 85 ~Fl---~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 85 DFA---SEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 233 22344444467899999999999998766543
No 30
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=94.91 E-value=0.26 Score=46.82 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHhccCchhHHHHH
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSIIL 345 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~-~~~WQvrlKALcvLEaLl~s~~~d~~~~v~ 345 (706)
-..+|+. +|. ..-..|--+.+-.++..++. -.+...+.+|.+||+ .++.+++++||.+||++++..+......|.
T Consensus 17 ~~~~Iek-ATs-~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva 94 (157)
T 1elk_A 17 VGQRIEK-ATD-GSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA 94 (157)
T ss_dssp HHHHHHH-HTC-TTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 4567877 443 23345555555555555543 245788899999997 588899999999999999988765443332
Q ss_pred HHHHhhhHH-Hhhhh---cCCChhHHHHHHHHHHHhcccccC
Q 005238 346 SYFCENNDV-VVKCS---ESPQSSLREKANKVLSLLGEEQAG 383 (706)
Q Consensus 346 ~yF~eN~~~-L~r~~---~s~Q~sLReKA~KVL~lLg~~~~~ 383 (706)
+ ++-.+. +.++. ..++..||+|+..++..|......
T Consensus 95 ~--~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 95 S--QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp S--HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred h--HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 2 111233 33333 235568999999999999886643
No 31
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.60 E-value=0.21 Score=50.00 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHH-HHH
Q 005238 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII-LSY 347 (706)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v-~~y 347 (706)
.+|+. +|. ..-..|--+.+-.+...+.. -.+...+.+|.+||.+..-.++++||.+||++++..+......| ..=
T Consensus 11 ~~i~k-AT~-~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 11 RLLDK-ATS-QLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp HHHHH-HTC-TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 37777 454 23346666667777766665 56788999999999888888999999999999999887544333 223
Q ss_pred HHhhhHHHhhhhcCCChhHHHHHHHHHHHhcccccCC
Q 005238 348 FCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 348 F~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
|.+....| +....+..||+|+..++..|.....+.
T Consensus 89 fl~~l~~l--~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 89 TMEELKDL--LKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33222222 234567889999999999998876554
No 32
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=94.23 E-value=0.53 Score=44.78 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=75.3
Q ss_pred hhHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHhccCchhHHH
Q 005238 267 TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSI 343 (706)
Q Consensus 267 t~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~-~~~WQvrlKALcvLEaLl~s~~~d~~~~ 343 (706)
+.-..+|+. +|. ..-..|--+.+-.+...+.. -.+...+.+|..||. .++-.++++||.+||++++..+......
T Consensus 15 t~~~~~Iek-ATs-~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEK-ATF-AGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHH-HTC-SSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHH-HcC-CCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 455677887 454 23345555555555555543 335788899999997 4678899999999999999998755433
Q ss_pred HH-HHHHhhhHHHhhhhc---CCChhHHHHHHHHHHHhcccccCC
Q 005238 344 IL-SYFCENNDVVVKCSE---SPQSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 344 v~-~yF~eN~~~L~r~~~---s~Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
|. .=|.+ +.|.++.. ..+..||+|+..++..|.....+.
T Consensus 93 iask~Fl~--e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 93 IVKKEFVK--ENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp HSSHHHHT--TTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHhhHhHH--HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 33 11221 22333332 234579999999999998877653
No 33
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.09 E-value=0.37 Score=47.74 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=73.5
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHH-H
Q 005238 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-S 346 (706)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~-~ 346 (706)
..+|+. +|. ..-..|--..+-.+...+.. -.+...+.+|..||....-.++++||.+||++++..+......|. .
T Consensus 7 ~~~ie~-AT~-~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~ 84 (220)
T 1dvp_A 7 CKNLEN-ATS-HLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK 84 (220)
T ss_dssp HHHHHH-HHC-TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH
T ss_pred HHHHHH-HcC-CCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH
Confidence 356777 443 23345555555555555543 356788889999998888899999999999999987654333222 2
Q ss_pred HHHhhhHHHhhh-hcCCChhHHHHHHHHHHHhcccccC
Q 005238 347 YFCENNDVVVKC-SESPQSSLREKANKVLSLLGEEQAG 383 (706)
Q Consensus 347 yF~eN~~~L~r~-~~s~Q~sLReKA~KVL~lLg~~~~~ 383 (706)
-|. +.|.++ .......||+|+..++..|......
T Consensus 85 ~fl---~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 85 ENC---EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHH---HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHH---HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 233 223332 2345678999999999999987654
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.02 E-value=0.82 Score=44.17 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcC-Ch-hHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 005238 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKS-GT-DFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEA 125 (706)
Q Consensus 48 ~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~G-s~-~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEl 125 (706)
...+++.|...|+++.+.||.-+|.+|..++.+- +. .|...+..-...+..|.+ +....||++|.++
T Consensus 131 ~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-----------D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 131 LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-----------EPDPTVRDSSAEA 199 (242)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT-----------SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHH
Confidence 4789999999999999999999999999976553 33 467777777777777772 2356799999999
Q ss_pred HHHhhc
Q 005238 126 ISAIFS 131 (706)
Q Consensus 126 l~aLFs 131 (706)
+..|..
T Consensus 200 l~~l~~ 205 (242)
T 2qk2_A 200 LGTLIK 205 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.8 Score=45.68 Aligned_cols=73 Identities=18% Similarity=0.392 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC---hhHHHHH-HHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005238 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG---TDFRREM-QRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (706)
Q Consensus 48 ~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs---~~F~r~l-qrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAq 123 (706)
...+++.|..-|+++.|.||.=+|++|..++.... ..|...+ ..-...+..|. ++-...||++|.
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-----------~D~~~~VR~aA~ 212 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-----------NDTQPAIRTIGF 212 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-----------TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHH
Confidence 46899999999999999999999999999997765 5687777 77777777777 122677999999
Q ss_pred HHHHHhhc
Q 005238 124 EAISAIFS 131 (706)
Q Consensus 124 Ell~aLFs 131 (706)
|++..|+.
T Consensus 213 ~~l~~i~~ 220 (249)
T 2qk1_A 213 ESFAILIK 220 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 36
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=89.16 E-value=2.2 Score=40.01 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhh-HHHhhhhcCC
Q 005238 286 PTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENN-DVVVKCSESP 362 (706)
Q Consensus 286 PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~-~~L~r~~~s~ 362 (706)
+|+..|+.-..-|.. -....|+++++++|...+=..++=+||+++++++..+. +| ..+|..+. +.+.......
T Consensus 22 nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~-~y---~~~F~~~l~~~f~~~~~~~ 97 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS-PY---TIYFSRNLFNLYKRTYLLV 97 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT-TH---HHHHHTTHHHHHHHHHHTS
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc-hH---HHHHHHHHHHHHHHHHHhC
Confidence 677777776666654 34689999999999766667899999999999998764 44 56777763 5555555556
Q ss_pred ChhHHHHHHHHHHHhcccccCC
Q 005238 363 QSSLREKANKVLSLLGEEQAGG 384 (706)
Q Consensus 363 Q~sLReKA~KVL~lLg~~~~~~ 384 (706)
....|.|-.|+++.+....+.+
T Consensus 98 d~~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 98 DNTTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp CHHHHHHHHHHHHHHTSGGGCS
T ss_pred CHHHHHHHHHHHHHHhCcccCC
Confidence 7899999999999999876665
No 37
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=87.90 E-value=3.3 Score=37.52 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHH
Q 005238 267 TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII 344 (706)
Q Consensus 267 t~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v 344 (706)
.-|..|.+.+-. +.++++.|+.-..-|-. -.++.|++++.++|...+=..|+-.|+++..+++......-..+
T Consensus 5 ~~e~~l~~~L~~-----L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 5 ALESSLDRKFQS-----VTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHHHHH-----CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 346666555443 45688888887777765 45689999999999654446799999999999986532111123
Q ss_pred HHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 345 LSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 345 ~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
...|...-..+...+. ....|.|..|||+.+..
T Consensus 80 ~~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 80 RESFADVLPEAAALVK--DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHHHTTHHHHHHTTC--STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcc
Confidence 4455554433332222 35689999999998864
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=85.41 E-value=1.6 Score=43.38 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhc-CChh--HHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHH
Q 005238 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGK-SGTD--FRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHE 124 (706)
Q Consensus 48 ~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~-Gs~~--F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqE 124 (706)
...++++|..-|++|.|.|+.-||.+|..++.+ |... ....+..-...+..|.. +-...||++|.+
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~-----------d~~~~VR~aA~~ 205 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG-----------HGDRNVRSQTMN 205 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT-----------CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh-----------CCcHHHHHHHHH
Confidence 357889999999999999999999999998764 4322 23333333334444442 224679999999
Q ss_pred HHHHhhc
Q 005238 125 AISAIFS 131 (706)
Q Consensus 125 ll~aLFs 131 (706)
++-.||-
T Consensus 206 l~~~ly~ 212 (278)
T 4ffb_C 206 LIVEIYK 212 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999997
No 39
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=83.63 E-value=3.3 Score=37.14 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH---HHHHhhcccCCCCCCCCchhhHHHHHHHHH
Q 005238 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA---VVRQLFHYKGQLDPLKGDALNKAVRDMAHE 124 (706)
Q Consensus 48 ~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~---~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqE 124 (706)
+.+|-..|-.-|.-.++.| -|||.+|+-|-.-- -=...|+||.. .||.|+.|.|. +.||+.|.+
T Consensus 8 l~~L~~~ik~~L~~~~~Dv-~kcl~~L~~l~~l~--~T~~mL~rnpe~V~t~kklRry~g~----------q~Ir~kA~~ 74 (98)
T 2b4j_C 8 LQRIHAEIKNSLKIDNLDV-NRCIEALDELASLQ--VTMQQAQKHTEMITTLKKIRRFKVS----------QVIMEKSTM 74 (98)
T ss_dssp HHHHHHHHHHHTCTTSCCH-HHHHHHHHHHHTCC--CCHHHHHTTHHHHHHHHHHTTCTTC----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCH-HHHHHHHHHHhccc--ccHHHHhhChHHHHHHHHHHHHhch----------HHHHHHHHH
Confidence 4566667777788788999 89999999875421 12456888887 67888888884 889999999
Q ss_pred HHH---Hhhc
Q 005238 125 AIS---AIFS 131 (706)
Q Consensus 125 ll~---aLFs 131 (706)
+-+ .+|.
T Consensus 75 iY~kfK~~f~ 84 (98)
T 2b4j_C 75 LYNKFKNMFL 84 (98)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 864 4554
No 40
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=82.47 E-value=4.7 Score=37.76 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=70.8
Q ss_pred CchhhhhhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhc
Q 005238 1 MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGK 80 (706)
Q Consensus 1 ~~~~~~~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~ 80 (706)
|+++.+.++.|. ..|..-|. ..+.....|..++.+.. +....|++.+.+++.+..|.-|+=+|=||+.+|.+
T Consensus 2 ~~~~~~~~~~f~--~~L~~L~~-----nSk~~I~~LT~~a~~~~-~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN 73 (144)
T 1sz9_A 2 DHDTEVIVKDFN--SILEELTF-----NSRPIITTLTKLAEENI-SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKN 73 (144)
T ss_dssp CHHHHHHHHHHH--HHHTTCSS-----CCHHHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHH--HHHHHhcc-----ccHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHh
Confidence 477889999998 44444442 46778888888887764 56789999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHH
Q 005238 81 SGTDFRREMQRHSA 94 (706)
Q Consensus 81 Gs~~F~r~lqrns~ 94 (706)
....|.....++..
T Consensus 74 ~g~~y~~~F~~~l~ 87 (144)
T 1sz9_A 74 VGSPYTIYFSRNLF 87 (144)
T ss_dssp TCTTHHHHHHTTHH
T ss_pred ccchHHHHHHHHHH
Confidence 88889888877764
No 41
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=82.15 E-value=6.3 Score=40.60 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 005238 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFC 349 (706)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~ 349 (706)
.+|-.++--.|-.-..-|+.++.-++.... .-...|.+.|.+.+.+++|++|.-+|-.|..++...+..+ .
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--------~ 203 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--------L 203 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--------G
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--------c
Confidence 344444444454333336666655554443 4567789999999999999999999999999999887642 2
Q ss_pred hhh---HHHhhhhcCCChhHHHHHHHHHH
Q 005238 350 ENN---DVVVKCSESPQSSLREKANKVLS 375 (706)
Q Consensus 350 eN~---~~L~r~~~s~Q~sLReKA~KVL~ 375 (706)
.-. ..|.+|-+++...||+.|..++-
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234 77889999999999999976543
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.73 E-value=2.3 Score=43.52 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcccc
Q 005238 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQ 381 (706)
Q Consensus 304 e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~~~ 381 (706)
..|+..|...|.++.|++|.-||.+|-+|......+.. ..+..+-...|.++..++...||..|-..|..+....
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~---~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL---KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT---CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 56778888888999999999999999999874332211 1222333467777778888999999999998887644
No 43
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.06 E-value=1.5 Score=43.52 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=47.9
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHhccCchhH-HHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHh
Q 005238 310 LEAKLQSPLWQVRMKAICVLESILRKKDDEKF-SIILSYFCENNDVVVKCSESPQSSLREKANKVLSLL 377 (706)
Q Consensus 310 L~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~-~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lL 377 (706)
|++||.+..|+.|+.||=.|..++.....+.. ..+...|.+....+.++.......+..+|-.+|..|
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~ 82 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSL 82 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 67899999999999999888888876432211 112223455567777888888889999988888765
No 44
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=80.22 E-value=9.6 Score=35.60 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHhhC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhH---HHHHHHHHhhhHHHhhhhc
Q 005238 286 PTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKF---SIILSYFCENNDVVVKCSE 360 (706)
Q Consensus 286 PSreeLq~Fl~~c~~L--d~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~---~~v~~yF~eN~~~L~r~~~ 360 (706)
-|+..|+....-|..- ....|++++++++...+=..++=+||++.+|++.-..... .....+|..+...+...+-
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 4778888777777752 4689999999999544444789999999999997653110 0235667766544333222
Q ss_pred CCChhHHHHHHHHHHHhcc
Q 005238 361 SPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 361 s~Q~sLReKA~KVL~lLg~ 379 (706)
......|.|..|||..+.-
T Consensus 101 ~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 101 RCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp SSCGGGHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcC
Confidence 2237899999999999963
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=79.71 E-value=7.7 Score=43.46 Aligned_cols=88 Identities=11% Similarity=0.182 Sum_probs=64.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHH
Q 005238 291 IQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKA 370 (706)
Q Consensus 291 Lq~Fl~~c~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA 370 (706)
|..+.+.+...-...|+..|...|.++.|++|..|+.+|-.|......+ .+..|+.+-.+.|..+..++...||..|
T Consensus 352 l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS---QLKPLVIQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH---HHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444444443335678888888889999999999999999888644322 2345666666777777788889999999
Q ss_pred HHHHHHhcccc
Q 005238 371 NKVLSLLGEEQ 381 (706)
Q Consensus 371 ~KVL~lLg~~~ 381 (706)
-.+|..|....
T Consensus 429 ~~~l~~~~~~~ 439 (876)
T 1qgr_A 429 AWTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99988877643
No 46
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=78.78 E-value=10 Score=36.50 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcc-------Cc------hhHHHHHHHHHhh
Q 005238 287 TRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKK-------DD------EKFSIILSYFCEN 351 (706)
Q Consensus 287 SreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~-------~~------d~~~~v~~yF~eN 351 (706)
|+..|..-.+.|.. -....|++.|+..++..+=..++=+||||.++++.- ++ .-|-.-...|.++
T Consensus 21 S~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~ 100 (157)
T 3clj_A 21 SGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEV 100 (157)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHH
Confidence 78888888887776 233679999999996444458999999999999982 11 1132112345666
Q ss_pred hHHHhh-hhcCCChhHHHHHHHHHHHhc
Q 005238 352 NDVVVK-CSESPQSSLREKANKVLSLLG 378 (706)
Q Consensus 352 ~~~L~r-~~~s~Q~sLReKA~KVL~lLg 378 (706)
.+.+.. +.......-|+|-.|||.+|.
T Consensus 101 i~~l~~~~~~~~~~~~k~Ki~klldiW~ 128 (157)
T 3clj_A 101 IQELLSDAIAKSNQDHKEKIRMLLDIWD 128 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 544422 233334678999999999998
No 47
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=78.46 E-value=2.6 Score=38.19 Aligned_cols=105 Identities=8% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHH
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILS 346 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~ 346 (706)
|..|.+.|-.. .++++.|+.-..-|-. -.++.|++++.++|...+=..|+-.||++..|++...... ..+..
T Consensus 6 ~~~l~~~L~~L-----~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~-~~y~~ 79 (135)
T 4fu3_A 6 ESALEKKLSEL-----SNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKG-PEFTR 79 (135)
T ss_dssp HHHHHHHHHHC-----CSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTC-SHHHH
T ss_pred HHHHHHHHHHc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcC-HHHHH
Confidence 55565554443 3455555554444433 3468899999999943222468999999999986442110 12355
Q ss_pred HHHhhhHHHh-hhhcCCChhHHHHHHHHHHHhcc
Q 005238 347 YFCENNDVVV-KCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 347 yF~eN~~~L~-r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
.|..+...+. ..........|+|..|||+.+..
T Consensus 80 ~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 80 EFESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 6665543322 22222234578899999998874
No 48
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=77.50 E-value=20 Score=33.18 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHhccCchhHHHH
Q 005238 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSP--LWQVRMKAICVLESILRKKDDEKFSII 344 (706)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~--~WQvrlKALcvLEaLl~s~~~d~~~~v 344 (706)
|..|.+.+-. +.++++.|+.-..-|-. -.++.|++++.+.|... +=.-|+-.|+++..+++......-..+
T Consensus 5 ~~~l~~kL~~-----L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f 79 (142)
T 2km4_A 5 SEQFTTKLNT-----LEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF 79 (142)
T ss_dssp HHHHHHHHHT-----CCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH
T ss_pred HHHHHHHHHh-----ccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH
Confidence 5556555433 56789999987777765 46689999999999653 456789999999999975421100122
Q ss_pred HHHHHhhh-HHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 345 LSYFCENN-DVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 345 ~~yF~eN~-~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
..-|.... +.+...........|.|..|||+.++.
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWee 115 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKE 115 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Confidence 34444443 333333333457799999999999864
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.51 E-value=6.7 Score=47.29 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHH
Q 005238 289 DAIQVFLVEAAKLDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLR 367 (706)
Q Consensus 289 eeLq~Fl~~c~~Ld~e~V~elL~~KL~-~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLR 367 (706)
..+..+++.+.---...|+..|...|. ...||.++-||-+|+.|.... + ..+..++-+-.+.|..|+-.-+.-|+
T Consensus 117 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~---~-~~~~~~~~~~~p~~~~~~~d~k~~v~ 192 (986)
T 2iw3_A 117 ETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA---K-DQVALRMPELIPVLSETMWDTKKEVK 192 (986)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS---H-HHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh---H-HHHHHhccchhcchHhhcccCcHHHH
Confidence 345555555554445677888888884 458999999999999999854 2 35678888889999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 005238 368 EKANKVLSLLGEEQA 382 (706)
Q Consensus 368 eKA~KVL~lLg~~~~ 382 (706)
..|.+.|..+..--.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 193 AAATAAMTKATETVD 207 (986)
T ss_dssp HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988876433
No 50
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=75.72 E-value=4.1 Score=38.12 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH---HHHHhhcccCCCCCCCCchhhHHHHHHHHH
Q 005238 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA---VVRQLFHYKGQLDPLKGDALNKAVRDMAHE 124 (706)
Q Consensus 48 ~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~---~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqE 124 (706)
+.+|-..|-.-|.-.++.| -|||.+|+-|-.-- -=...|+||.. .||.|+.|.|. +.||+.|.+
T Consensus 8 L~~L~~~Ik~~L~v~~~Dv-~kCl~~Leel~~l~--vT~~mL~Rnpe~V~TlkklRrY~gn----------q~Ir~kA~~ 74 (127)
T 1z9e_A 8 LQRIHAEIKNSLKIDNLDV-NRCIEALDELASLQ--VTMQQAQKHTEMITTLKKIRRFKVS----------QVIMEKSTM 74 (127)
T ss_dssp HHHHHHHHHHHTCGGGCCH-HHHHHHHHHHHHSC--CCHHHHGGGHHHHHHHHHHTTCTTC----------SSHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCH-HHHHHHHHHHcccc--ccHHHHhhChHHHHHHHHHHHHhcc----------HHHHHHHHH
Confidence 4566666777788778999 89999998875431 12456888887 67888888886 669999999
Q ss_pred HH---HHhhc
Q 005238 125 AI---SAIFS 131 (706)
Q Consensus 125 ll---~aLFs 131 (706)
+- ..||.
T Consensus 75 iY~kFK~lf~ 84 (127)
T 1z9e_A 75 LYNKFKNMFL 84 (127)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 85 45675
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.74 E-value=9.1 Score=40.49 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHH
Q 005238 47 IGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAI 126 (706)
Q Consensus 47 ~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll 126 (706)
++..++..|.+.|++..+.||..+++.|..++..-..+|.. ..-...+..+. . | ....||..|.+++
T Consensus 516 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~---~--d------~d~~vr~~a~~al 582 (588)
T 1b3u_A 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLT---Q--D------QDVDVKYFAQEAL 582 (588)
T ss_dssp HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHT---T--C------SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHc---C--C------CchhHHHHHHHHH
Confidence 45678899999999999999999999999999876666542 11122333332 1 2 2357999999999
Q ss_pred HHhh
Q 005238 127 SAIF 130 (706)
Q Consensus 127 ~aLF 130 (706)
..|-
T Consensus 583 ~~l~ 586 (588)
T 1b3u_A 583 TVLS 586 (588)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8774
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=74.53 E-value=14 Score=41.29 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHH
Q 005238 290 AIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREK 369 (706)
Q Consensus 290 eLq~Fl~~c~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReK 369 (706)
.|..+...+...-...|.+.|.+.|.+..|++|..|+.+|..|......+ .+..|+..-...|.++...+...||..
T Consensus 354 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~il~~l~~~l~d~~~~vr~~ 430 (861)
T 2bpt_A 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV---QRTYYVHQALPSILNLMNDQSLQVKET 430 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH---HHHHHHHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444445678888888888999999999999999998643312 234555554566667777788999999
Q ss_pred HHHHHHHhcc
Q 005238 370 ANKVLSLLGE 379 (706)
Q Consensus 370 A~KVL~lLg~ 379 (706)
|-.+|..|..
T Consensus 431 a~~~l~~l~~ 440 (861)
T 2bpt_A 431 TAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=73.25 E-value=10 Score=42.44 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHhhCccchhHHHHHHHHHhhccCC--CchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCC
Q 005238 33 LEEICELLRSSHVSIGKEVSDFILKRLEHKS--PVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLK 110 (706)
Q Consensus 33 ~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ks--phVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~ 110 (706)
+.+|++.........+..|+..|.+.|++.. +.||..++++|..++......|...+..-...+.++..+.-.+
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~---- 738 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN---- 738 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS----
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC----
Confidence 3444444332222235678888999998765 8899999999999999888889888877777666666543211
Q ss_pred Cch----hhHHHHHHHHHHHHHhhc
Q 005238 111 GDA----LNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 111 Gd~----l~q~VR~aAqEll~aLFs 131 (706)
+|. ....||..+-+++..|..
T Consensus 739 ~d~d~~~~~~~vr~~~l~~~~~i~~ 763 (861)
T 2bpt_A 739 GTLEALDYQIKVLEAVLDAYVGIVA 763 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 336799988888888775
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=71.31 E-value=11 Score=43.15 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHH
Q 005238 289 DAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLRE 368 (706)
Q Consensus 289 eeLq~Fl~~c~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLRe 368 (706)
..|..+.+.+...-...+...|.+.|.++.|++|.-|+.+|-.|...... .+..|+.+-...|.++..++...||.
T Consensus 343 ~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~----~~~~~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 343 AALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ----GMIPYLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH----HHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH----HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 44555555555444567888898889999999999999999999875431 22345555567788888889999999
Q ss_pred HHHHHHHHhcc
Q 005238 369 KANKVLSLLGE 379 (706)
Q Consensus 369 KA~KVL~lLg~ 379 (706)
.|-..|..+..
T Consensus 419 ~a~~~l~~l~~ 429 (852)
T 4fdd_A 419 ITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99888887665
No 55
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=71.08 E-value=12 Score=34.52 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHh
Q 005238 49 KEVSDFILKRLEHKSPVVKQKALRLIKYSVG 79 (706)
Q Consensus 49 ~eI~dyLlkRL~~ksphVKlKaLKILkyLc~ 79 (706)
....+++++.|++.++.|+..|++.|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999998876543
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.03 E-value=13 Score=34.10 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=13.2
Q ss_pred HHhhhhcCCChhHHHHHHHHHHHhc
Q 005238 354 VVVKCSESPQSSLREKANKVLSLLG 378 (706)
Q Consensus 354 ~L~r~~~s~Q~sLReKA~KVL~lLg 378 (706)
.|.++..++...||..|-..|..++
T Consensus 111 ~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 111 PLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3344444555556666665555554
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.89 E-value=7.8 Score=41.96 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHh
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDE-KFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLL 377 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d-~~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lL 377 (706)
+++.|.+-|..+.++++..+|.+|+.|++..... ....+..+|.|. .+.|+.|..+....|++||.+||...
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566777778889999999999999999754221 123456677666 48899999999999999999999654
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=68.91 E-value=8 Score=33.83 Aligned_cols=76 Identities=17% Similarity=-0.003 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhH
Q 005238 287 TRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSL 366 (706)
Q Consensus 287 SreeLq~Fl~~c~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sL 366 (706)
....-..=+.....+.....++.|...|.++.|.||..|+-+|..+... + -.+.|..+..+....|
T Consensus 55 ~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~---~-----------a~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE---R-----------VRAAMEKLAETGTGFA 120 (131)
T ss_dssp CHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH---H-----------HHHHHHHHTTSCCTHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---H-----------HHHHHHHHHhCCCHHH
Confidence 3333334444555565566677888888899999999998877766421 1 1244555556677889
Q ss_pred HHHHHHHHHH
Q 005238 367 REKANKVLSL 376 (706)
Q Consensus 367 ReKA~KVL~l 376 (706)
|..|...|..
T Consensus 121 r~~A~~aL~~ 130 (131)
T 1te4_A 121 RKVAVNYLET 130 (131)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.17 E-value=14 Score=34.26 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=24.4
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHh
Q 005238 50 EVSDFILKRLEHKSPVVKQKALRLIKYSVG 79 (706)
Q Consensus 50 eI~dyLlkRL~~ksphVKlKaLKILkyLc~ 79 (706)
+.++.|.+.|++.++.|+..|++.|..+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 456788889999999999999988877543
No 60
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=66.85 E-value=14 Score=39.37 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=50.8
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh----------hHHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT----------DFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAV 118 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~----------~F~r~lqrn--s~~Ik~~~~f~GppDpl~Gd~l~q~V 118 (706)
++..|..-|+...+.|+..||.+|..||..+.. .|...+... ...|..+.+ . .+..|
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~---~--------~~~~v 483 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS---H--------DNNEI 483 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG---C--------SSHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc---C--------CCHHH
Confidence 467888889999999999999999999987644 234333333 234444442 1 14569
Q ss_pred HHHHHHHHHHhhcCC
Q 005238 119 RDMAHEAISAIFSEE 133 (706)
Q Consensus 119 R~aAqEll~aLFsd~ 133 (706)
|+.|..+++.+|+++
T Consensus 484 ~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 484 YEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHCCCc
Confidence 999999999999943
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.15 E-value=17 Score=33.42 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
++..|.+-|++.++.|+..|+.+|..||.. +++.+..+.+. ..|..+...-... ...||+.|-.+|..|-
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~-g~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEA-GALEKLEQLQSHE--------NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHT-THHHHHHHGGGCS--------CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHC-CCHHHHHHHHhCC--------CHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999985 45555555443 3444444333221 3469999999998774
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.47 E-value=19 Score=33.27 Aligned_cols=29 Identities=24% Similarity=0.039 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 005238 304 LAMSRALEAKLQSPLWQVRMKAICVLESI 332 (706)
Q Consensus 304 e~V~elL~~KL~~~~WQvrlKALcvLEaL 332 (706)
......|.+.|.++.|.+|..|+.+|-.+
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34445555555566666666665554443
No 63
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=63.56 E-value=15 Score=39.24 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=50.8
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh----------hHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT----------DFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~----------~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~ 120 (706)
++..|..-|++..+.|+..||.+|..|+..+.. .+...+.+. ..+..+...... .+..||+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~L~~L~~~--------~~~~v~~ 499 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA-GGMEKIFNCQQN--------ENDKIYE 499 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT-THHHHHHGGGGC--------SCHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc-CcHHHHHHHHcC--------CCHHHHH
Confidence 567788888888899999999999999976543 244434332 233333333322 2456999
Q ss_pred HHHHHHHHhhcC
Q 005238 121 MAHEAISAIFSE 132 (706)
Q Consensus 121 aAqEll~aLFsd 132 (706)
.|..+|+.+|.+
T Consensus 500 ~a~~il~~~~~~ 511 (530)
T 1wa5_B 500 KAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHCCc
Confidence 999999999983
No 64
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=63.21 E-value=7.4 Score=39.84 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchh------HHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHH
Q 005238 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEK------FSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSL 376 (706)
Q Consensus 305 ~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~------~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~l 376 (706)
.+++.|.+-|.+..|.+|..|+.+|+.|+....... ...+.+.|.+. .+.|..+..++...+|++|..+|..
T Consensus 361 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp TCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356677777788899999999999999998543210 01234555544 3678888888888999999999986
Q ss_pred hc
Q 005238 377 LG 378 (706)
Q Consensus 377 Lg 378 (706)
+=
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 54
No 65
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=62.17 E-value=36 Score=35.29 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhccc
Q 005238 301 LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEE 380 (706)
Q Consensus 301 Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~~ 380 (706)
.+.+ .+.+|..=|.+..-.++.|||.+||-+++.....-- ..-+.+--+.+.++.-+..-.+.=+|.|+|+.|=..
T Consensus 30 ~~e~-~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 30 EDKR-ALFLILELAGEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HCHH-HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred hchh-HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 4444 666777777888999999999999999998532211 112233346777777788888999999999987655
Q ss_pred ccCC
Q 005238 381 QAGG 384 (706)
Q Consensus 381 ~~~~ 384 (706)
.+-+
T Consensus 106 vpL~ 109 (265)
T 3b2a_A 106 VPMG 109 (265)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 4443
No 66
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=61.16 E-value=14 Score=40.06 Aligned_cols=74 Identities=8% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHH-hcc
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDE-KFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSL-LGE 379 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d-~~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~l-Lg~ 379 (706)
+++.|.+-|..+.++++..+|-+|+.|++..... ....+..+|.|. .+.|+.|..+....|++||.+||.. ++.
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 3556777778899999999999999999754211 123445677666 5889999999999999999999965 443
No 67
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.05 E-value=17 Score=38.66 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhH------HHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHh
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKF------SIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLL 377 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~------~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lL 377 (706)
+++.|..-|..+.+.++..||.+|..|++....+.. ..+..++.+. .+.|..+..+....++++|.+||..+
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777789999999999999999986533110 1245566555 47788899999999999999999866
Q ss_pred cc
Q 005238 378 GE 379 (706)
Q Consensus 378 g~ 379 (706)
-.
T Consensus 495 ~~ 496 (528)
T 4b8j_A 495 WM 496 (528)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=60.37 E-value=19 Score=33.51 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
++..|.+-|.+.++.|+..|+++|..||. ++++.+..+.+ ...|..+..+-..+| ..||..|-.++..|.
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~--------~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVD-AGGVEVLQKLLTSTD--------SEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHH-TTHHHHHHHGGGCSC--------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHH-CCCHHHHHHHHCCCc--------HHHHHHHHHHHHHHH
Confidence 77889999999999999999999999997 46666655554 345555555443222 369999999999998
Q ss_pred cCC
Q 005238 131 SEE 133 (706)
Q Consensus 131 sd~ 133 (706)
...
T Consensus 241 ~~~ 243 (252)
T 4hxt_A 241 SGG 243 (252)
T ss_dssp HTC
T ss_pred cCC
Confidence 844
No 69
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.18 E-value=11 Score=38.76 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHh-cCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHH
Q 005238 49 KEVSDFILKRLEHKSPVVKQKALRLIKYSVG-KSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAIS 127 (706)
Q Consensus 49 ~eI~dyLlkRL~~ksphVKlKaLKILkyLc~-~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~ 127 (706)
..|.+||++-+++|+..+|.-||.+|-+|+. +|-. + .+....-+.....-+.+| ..||++|-.++.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~----~~~l~~~~~ia~ll~D~d--------~~VR~aAl~~lv 232 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P----LKSLSVEKTVAPFVGDKD--------VNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G----GGGGCHHHHHGGGGGCSS--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c----cccccchHHHHHHHcCCC--------HHHHHHHHHHHH
Confidence 4688888888888888888889998888885 4544 2 222200155555444434 569999999999
Q ss_pred Hhhc
Q 005238 128 AIFS 131 (706)
Q Consensus 128 aLFs 131 (706)
.+|.
T Consensus 233 e~y~ 236 (266)
T 2of3_A 233 ACFK 236 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 70
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=59.95 E-value=13 Score=39.81 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchh------HHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHh
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEK------FSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLL 377 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~------~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lL 377 (706)
+++.|..-|.+..+.++..|+.+|+.|+.....+. ...+..+|.+. .+.|+.+..++...|+++|..+|..+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56677777778899999999999999998653210 01234566555 57888899999999999999999866
Q ss_pred ccc
Q 005238 378 GEE 380 (706)
Q Consensus 378 g~~ 380 (706)
-..
T Consensus 509 ~~~ 511 (530)
T 1wa5_B 509 FGE 511 (530)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 71
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=59.50 E-value=12 Score=32.65 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=41.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 308 RALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 308 elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
+.|...|.++.|.||..|+.+|..+.. .+. .+.|.++..++...||..|-..|..++.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~---~~a-----------~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD---ERA-----------VEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS---HHH-----------HHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC---HHH-----------HHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 566677788999999998887766542 111 2444455556778899999999999873
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=59.13 E-value=12 Score=38.65 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred hhhHHHHHHHH--hhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC---hhHHHHHHHhHHHHHHhhcccC
Q 005238 30 VYKLEEICELL--RSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG---TDFRREMQRHSAVVRQLFHYKG 104 (706)
Q Consensus 30 GYl~~EIa~~t--~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs---~~F~r~lqrns~~Ik~~~~f~G 104 (706)
-+.++|+-+.. .-+. ..+++++|-+.+=+.++.-.|.+||+|||++|+.... ..|.+-+. .++....
T Consensus 54 L~~LeellK~~~~~l~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~----aL~dlik--- 125 (265)
T 3b2a_A 54 FVALGEILKRADSDLRM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAK----TLVSLLE--- 125 (265)
T ss_dssp HHHHHHHHHHSCHHHHH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHH----HHHHHTT---
T ss_pred HHHHHHHHHhccccccH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHHhc---
Confidence 36777777662 1111 2467888888888889999999999999999998763 55554433 3333321
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHh
Q 005238 105 QLDPLKGDALNKAVRDMAHEAISAI 129 (706)
Q Consensus 105 ppDpl~Gd~l~q~VR~aAqEll~aL 129 (706)
..+..+|.+|-|.+.-|
T Consensus 126 --------~~~~il~~eaae~Lgkl 142 (265)
T 3b2a_A 126 --------SPDDMMRIETIDVLSKL 142 (265)
T ss_dssp --------SCCHHHHHHHHHHHHHC
T ss_pred --------CCCchHHHHHHHHhCcC
Confidence 22446899999999888
No 73
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=58.86 E-value=38 Score=30.98 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005238 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLLG 378 (706)
Q Consensus 305 ~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lLg 378 (706)
.+++.|.+-|+++...+|..|+.+|-.|..... . ....+.+. .+.|.++..+....+|++|..+|+.|.
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~---~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGN--E---QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--H---HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc--H---HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 356677777778899999999999999987532 1 12333333 477888888889999999999998875
No 74
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=57.82 E-value=13 Score=37.93 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHh
Q 005238 50 EVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI 129 (706)
Q Consensus 50 eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aL 129 (706)
.++..|.+.|++..+.|+..|+.+|-.|+..+.++..+.+.+ ..+|..+...-...| ..||..|-+++..|
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~--------~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMD--------SKIVQVALNGLENI 388 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSC--------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCC--------HHHHHHHHHHHHHH
Confidence 366788999999999999999999999999887776665552 234444444432222 36899888888877
Q ss_pred hc
Q 005238 130 FS 131 (706)
Q Consensus 130 Fs 131 (706)
..
T Consensus 389 ~~ 390 (450)
T 2jdq_A 389 LR 390 (450)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 75
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=56.72 E-value=73 Score=29.58 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=56.5
Q ss_pred CCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh-------hHHHHHHHhHH
Q 005238 26 KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT-------DFRREMQRHSA 94 (706)
Q Consensus 26 ~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~-------~F~r~lqrns~ 94 (706)
.|..+-....|..++.+.. .....|++.+.+++.+..|.-|+=+|=|++-+|.+... .|.....+++.
T Consensus 19 ~~~S~~~I~~LT~~a~~~~-~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~ 93 (145)
T 3d9j_A 19 PPISKAKMTQITKAAIKAI-KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNII 93 (145)
T ss_dssp SSCCHHHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHH
Confidence 3577889999999998865 45789999999999999999999999999999987654 68877766664
No 76
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=55.01 E-value=1e+02 Score=28.46 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHh-h-hHHHhhhhcCCChhHHHHHHHHHHHhccccc
Q 005238 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCE-N-NDVVVKCSESPQSSLREKANKVLSLLGEEQA 382 (706)
Q Consensus 305 ~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~e-N-~~~L~r~~~s~Q~sLReKA~KVL~lLg~~~~ 382 (706)
.+++.|..-|.++.+.+|..|+.+|..|..... . ..+++.+ . .+.|.++..+....+|+.|..+|..|....+
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPT--S---AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH--H---HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--H---HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 366777777888899999999999999987321 1 1233322 2 4777888888889999999999999987554
Q ss_pred CC
Q 005238 383 GG 384 (706)
Q Consensus 383 ~~ 384 (706)
..
T Consensus 245 ~~ 246 (252)
T 4hxt_A 245 LE 246 (252)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=54.80 E-value=29 Score=35.61 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHh----HHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRH----SAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAI 126 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrn----s~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll 126 (706)
++..|.+-|.++++.|+.+||+.|..|+.. .+..+..++.. ...|+++.+- +.+..-|+.+++.|.+++
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~------lq~~e~~~e~~~~~~~il 282 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQL------LQQHEEYQEELEFCEKLL 282 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHH------HTTCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHH------ccchHHHHHHHHHHHHHH
Confidence 567788889999999999999999998866 34433433321 2334333211 122334788999999999
Q ss_pred HHhhcC
Q 005238 127 SAIFSE 132 (706)
Q Consensus 127 ~aLFsd 132 (706)
+..|++
T Consensus 283 ~~~f~~ 288 (296)
T 1xqr_A 283 QTCFSS 288 (296)
T ss_dssp HHHCC-
T ss_pred HHHcCC
Confidence 999984
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=54.07 E-value=20 Score=33.74 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
++..|.+-|++.++.|+..|+.+|..||.. +++.+..+.+ ...|..+...-...| ..||..|-.+|..|.
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~g~i~~L~~ll~~~~--------~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 181 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKE-AGALEKLEQLQSHEN--------EKIQKEAQEALEKLQ 250 (252)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHH-TTHHHHHHTTTTCSS--------SHHHHTHHHHHHTTC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHH-CCcHHHHHHHhCCCC--------HHHHHHHHHHHHHHh
Confidence 467889999999999999999999999954 5555555543 345555555443333 269999988887765
No 79
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=53.37 E-value=30 Score=36.52 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005238 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLG 378 (706)
Q Consensus 304 e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg 378 (706)
..+...|...+.++.|.+|..++.+|..|.+.-+.+.+. +++ .+.+.++.......||+.|.+.|..|.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l---~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD---EKL---NSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC---HHH---HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHH---HHH---HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 456667777778999999999999998888765443221 111 244445555666789998888776654
No 80
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.00 E-value=42 Score=32.43 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005238 301 LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLG 378 (706)
Q Consensus 301 Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg 378 (706)
+....++..|...|.++.|.||..|+.+|-.+.. ... +-.+.|.++.......||..|-..|..++
T Consensus 155 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~-----------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 155 INDKATIPLLINLLKDPNGDVRNWAAFAININKY-DNS-----------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp C---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-CCH-----------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-CcH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3333455566666667777777777766655421 111 01134555556667788888888888887
No 81
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=50.79 E-value=46 Score=34.19 Aligned_cols=72 Identities=11% Similarity=0.320 Sum_probs=52.8
Q ss_pred cCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhc
Q 005238 284 LQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSE 360 (706)
Q Consensus 284 ~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~ 360 (706)
..|.+.-++.-+..... -....+...|..||+...|.|-+|+|.+|-.|++.+.. .+.+|...|.. +..|+.
T Consensus 42 ~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~----~~l~~~~~~~~-~~~Ls~ 115 (271)
T 3zyl_A 42 MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNE----RFIQYLASRNT-LFNLSN 115 (271)
T ss_dssp SCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHCSC-CCCCTT
T ss_pred CCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCH----HHHHHHHhCCC-eechhc
Confidence 55666666655554443 34579999999999999999999999999999998763 35667766653 434443
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.18 E-value=61 Score=31.27 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 303 ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 303 ~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
...+.+.|...|.++.|.||..|+.+|..+.... . .+.|.++...+. +|..|.+.|..+|.
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~---~-----------~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR---V-----------LSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG---G-----------HHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh---h-----------HHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 4566788888899999999999988887765221 1 133334444433 89999999999876
No 83
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=48.67 E-value=40 Score=35.27 Aligned_cols=72 Identities=11% Similarity=0.320 Sum_probs=52.6
Q ss_pred cCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhc
Q 005238 284 LQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSE 360 (706)
Q Consensus 284 ~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~ 360 (706)
..|.+.-++.-+..... -....+...|..||+...|.|-+|+|.+|-.|++.+.. .+.+|+.+|.. +..|+.
T Consensus 42 ~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~----~~l~~~~~~~~-~~~Ls~ 115 (310)
T 3zym_A 42 MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNE----RFIQYLASRNT-LFNLSN 115 (310)
T ss_dssp SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHCSC-CCCCTT
T ss_pred CCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCH----HHHHHHHhCCC-eeeccc
Confidence 56666666655554443 34578999999999999999999999999999998763 45677776653 334444
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=48.54 E-value=41 Score=37.59 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=64.2
Q ss_pred hHHHHHHHHhhCccchhHHHHHHHHHhhcc--CCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCC-CC
Q 005238 32 KLEEICELLRSSHVSIGKEVSDFILKRLEH--KSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQL-DP 108 (706)
Q Consensus 32 l~~EIa~~t~~S~~s~~~eI~dyLlkRL~~--ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~Gpp-Dp 108 (706)
.+.+|++.....-...+.+|+..|++.|+. .+..||.-++.+|-.++....++|...+..-...+..+..-+-.+ |+
T Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~ 752 (876)
T 1qgr_A 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDY 752 (876)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCCh
Confidence 344555443322222356899999999987 356799999999999988767778887777777776665433111 11
Q ss_pred CCCchhhHHHHHHHHHHHHHhhc
Q 005238 109 LKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 109 l~Gd~l~q~VR~aAqEll~aLFs 131 (706)
.-.+.-..||..+-+++..|+.
T Consensus 753 -~~~~~~~~~r~~~~~~~~~i~~ 774 (876)
T 1qgr_A 753 -DMVDYLNELRESCLEAYTGIVQ 774 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 0001124789888888887765
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=47.86 E-value=52 Score=33.69 Aligned_cols=72 Identities=10% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
.+..|.+-|++.++.||.+|+.+|.|||.. +++.++.+.+. .+|+.+...=..+|+ .||+.|-.++..|.
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~-g~i~~Lv~LL~~~d~--------~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM-GMVQQLVALVRTEHS--------PFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT-THHHHHHHHHTSCCS--------THHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHc-CCHHHHHHHHcCCCh--------hHHHHHHHHHHHHH
Confidence 566888888988999999999999999987 67777777653 566666555444442 48888888888887
Q ss_pred cC
Q 005238 131 SE 132 (706)
Q Consensus 131 sd 132 (706)
..
T Consensus 238 ~~ 239 (296)
T 1xqr_A 238 TD 239 (296)
T ss_dssp TT
T ss_pred hC
Confidence 64
No 86
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.30 E-value=34 Score=31.46 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=47.7
Q ss_pred HhhcCCcccCCCHHHHHHHHHHHhhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 005238 276 IVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (706)
Q Consensus 276 i~T~gGvr~~PSreeLq~Fl~~c~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl 333 (706)
++..-|.|.+|.|..|-.++.+..-+.++.|.+.|..+...-.--+-+|+|-.++...
T Consensus 9 ~L~~~g~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445699999999999998888778999999999988776666778899997776543
No 87
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=45.21 E-value=64 Score=35.53 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 005238 46 SIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEA 125 (706)
Q Consensus 46 s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEl 125 (706)
+.+..++..|.+.|.+.+|+|+.||...|-+++...+..+.. ..-...++++. ..+| ..||..|=.+
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL---~d~d--------~~V~~~A~~a 183 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLI---ADSN--------PMVVANAVAA 183 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTT---SCSC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHh---CCCC--------hhHHHHHHHH
Confidence 456677777999999999999999999999999976553321 11223444444 2333 3588888777
Q ss_pred HHHhhcCC
Q 005238 126 ISAIFSEE 133 (706)
Q Consensus 126 l~aLFsd~ 133 (706)
+.-|..+.
T Consensus 184 L~~i~~~~ 191 (591)
T 2vgl_B 184 LSEISESH 191 (591)
T ss_dssp HHHHTTSC
T ss_pred HHHHHhhC
Confidence 77776644
No 88
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=44.37 E-value=66 Score=32.70 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=54.8
Q ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHhhccC--CCchHHHHHHHHHHHHhcCChhHHHHHHHhHH-HHHHhhcccCCCC
Q 005238 31 YKLEEICELLRSSHVSIGKEVSDFILKRLEHK--SPVVKQKALRLIKYSVGKSGTDFRREMQRHSA-VVRQLFHYKGQLD 107 (706)
Q Consensus 31 Yl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~k--sphVKlKaLKILkyLc~~Gs~~F~r~lqrns~-~Ik~~~~f~GppD 107 (706)
..+.+|+...+. ...+.+++..|...+++. ++.++.-+|++|.++|..-.+++ +..+.. ++..+..+-..+
T Consensus 111 ~~i~~ia~~~~~--~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~- 184 (462)
T 1ibr_B 111 QCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKE- 184 (462)
T ss_dssp HHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG---TGGGHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHhcc--ccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh---hHhHHHHHHHHHHHHhCCC-
Confidence 344555554322 123568999999999988 89999999999999998653332 222222 223233222211
Q ss_pred CCCCchhhHHHHHHHHHHHHHhh
Q 005238 108 PLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 108 pl~Gd~l~q~VR~aAqEll~aLF 130 (706)
.....||.+|-+++..+.
T Consensus 185 -----~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 185 -----EPSNNVKLAATNALLNSL 202 (462)
T ss_dssp -----CCCHHHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHHHH
Confidence 124679998888777654
No 89
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=39.03 E-value=94 Score=29.07 Aligned_cols=70 Identities=23% Similarity=0.195 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh-hHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN-NDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN-~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
+++.|.+-|.+..|.+|..|+.+|-.|..... +.. ....... .+.|.++..+....+|..|-.+|..|-.
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~---~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI---QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHH---HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HHH---HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 45667777778899999999999999986432 111 1122222 4677777778889999999999998863
No 90
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=37.28 E-value=74 Score=28.47 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcC----ChhHHHHHHHhHHHH
Q 005238 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKS----GTDFRREMQRHSAVV 96 (706)
Q Consensus 32 l~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~G----s~~F~r~lqrns~~I 96 (706)
-...+..++.... +.+.+|++.+.++|.+..+.-|+-.|=++..+|.+. ...|+..+.+....+
T Consensus 23 sI~~~s~w~l~h~-~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~ 90 (132)
T 4flb_A 23 SIQGLSSWCIENK-KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA 90 (132)
T ss_dssp HHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 3556667776654 457899999999999999888999999999888643 567888888776533
No 91
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=36.27 E-value=1.2e+02 Score=27.19 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=48.4
Q ss_pred hHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhc---CChhHHHHHHHhHH
Q 005238 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGK---SGTDFRREMQRHSA 94 (706)
Q Consensus 32 l~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~---Gs~~F~r~lqrns~ 94 (706)
-...+..++.... +...+|++.+.++|.+..+.-|+=.|=++..++.+ -..+|+..+.+...
T Consensus 22 sI~~~s~w~l~~~-~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~ 86 (135)
T 4fu3_A 22 SVQTLSLWLIHHR-KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLV 86 (135)
T ss_dssp HHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3566777776654 45789999999999999888899999888888543 35678888888775
No 92
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=35.91 E-value=1.1e+02 Score=32.97 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=50.1
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcC----C-hhHHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKS----G-TDFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~G----s-~~F~r~lqrn--s~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAq 123 (706)
+++.|.+-|+.+.+.|...+|..|..++..+ . ..+.+.+.+. ...|..|+++ .+..|++.|.
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~-----------~n~~i~~~A~ 470 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-----------ENESVYKASL 470 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC-----------SSHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC-----------CCHHHHHHHH
Confidence 3567888888888888899999999888533 2 3444444332 2456666642 2557999999
Q ss_pred HHHHHhhcC
Q 005238 124 EAISAIFSE 132 (706)
Q Consensus 124 Ell~aLFsd 132 (706)
++|+--|++
T Consensus 471 ~iie~yf~~ 479 (510)
T 3ul1_B 471 NLIEKYFSV 479 (510)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHCCC
Confidence 999999983
No 93
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=35.27 E-value=70 Score=35.14 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCC---------------------
Q 005238 6 RAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSP--------------------- 64 (706)
Q Consensus 6 ~~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksp--------------------- 64 (706)
+.|.+-+--.||.+.|... .+-|. |..+-=+||.+-.+ -.++++.|+.|.+...|
T Consensus 40 ~~IkagTL~~LVe~Lt~~~-~~D~~--f~~~FLlTyRsF~t-p~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~ 115 (490)
T 2ii0_A 40 PIIKAGTVIKLIERLTYHM-YADPN--FVRTFLTTYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAEL 115 (490)
T ss_dssp CCEEEECHHHHHHHHTCSS-SCCHH--HHHHHHHHGGGTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHH
T ss_pred ceeeecCHHHHHHHHccCC-CCCHH--HHHHHHHHHHhhCC-HHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHH
Confidence 3455556678899998753 33343 45566678887654 47999999999975322
Q ss_pred ---------chHHHHHHHHHHHHhcCChhHHH
Q 005238 65 ---------VVKQKALRLIKYSVGKSGTDFRR 87 (706)
Q Consensus 65 ---------hVKlKaLKILkyLc~~Gs~~F~r 87 (706)
-|+++++.+|++-+++-..+|.+
T Consensus 116 ~~~~~~~~~~iq~rV~~vl~~Wv~~~~~DF~~ 147 (490)
T 2ii0_A 116 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFER 147 (490)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhCcccccc
Confidence 26688999999999887888875
No 94
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=34.14 E-value=89 Score=37.72 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhcccCCCCCCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCc---------------------
Q 005238 7 AVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPV--------------------- 65 (706)
Q Consensus 7 ~v~~y~~~~lv~kATSddd~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksph--------------------- 65 (706)
-|.+=+--+||..-|+++ .+- +.|-.+==+||.+-.+ -.++++.|+.|.+...|.
T Consensus 600 ~IkagTL~~LVe~Lt~~~-~~D--~~f~~~FLlTyRsF~t-p~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~ 675 (1049)
T 3ksy_A 600 IIKAGTVIKLIERLTYHM-YAD--PNFVRTFLTTYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELK 675 (1049)
T ss_dssp CEEEECHHHHHHHHTCSS-CCC--HHHHHHHHHSCTTTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHH
T ss_pred eeeccCHHHHHHHHcccc-CCC--HHHHHHHHHHhhccCC-HHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHH
Confidence 344445567888888864 344 4455556678887754 489999999998755443
Q ss_pred ---------hHHHHHHHHHHHHhcCChhHHH
Q 005238 66 ---------VKQKALRLIKYSVGKSGTDFRR 87 (706)
Q Consensus 66 ---------VKlKaLKILkyLc~~Gs~~F~r 87 (706)
|+++++.||++-+.+-..+|..
T Consensus 676 ~~~~~~~~~ir~rV~~vLk~Wle~~~~DF~~ 706 (1049)
T 3ksy_A 676 RFRKEYIQPVQLRVLNVCRHWVEHHFYDFER 706 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhhccchhhhHHHHHHHHHHhCcccccC
Confidence 6788999999999887788874
No 95
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=33.53 E-value=35 Score=30.20 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHH
Q 005238 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVR 97 (706)
Q Consensus 32 l~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik 97 (706)
+|+|..+.+..-. .-+-|++.||-+|..+.+|.. | .+.+|+..|.|+....+
T Consensus 16 LfeEFv~~C~~~t-~d~PeV~~fL~~r~~kas~~f----------L---~SveF~n~L~rcL~Raq 67 (94)
T 2kzs_A 16 LFEEFLELCKMQT-ADHPEVVPFLYNRQQRAHSLF----------L---ASAEFCNILSRVLSRAR 67 (94)
T ss_dssp HHHHHHHHHHHHC-TTCTTHHHHHHHHHHTBCHHH----------H---TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHhccCCchh----------h---hHHHHHHHHHHHHHHHh
Confidence 7888888876432 235689999999999887654 1 37888888888876554
No 96
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=32.09 E-value=74 Score=37.90 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005238 304 LAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (706)
Q Consensus 304 e~V~elL~~KL~-~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r~~~s~Q~sLReKA~KVL~lLg~ 379 (706)
..|+..|.+.|. ++.|.+|..||.++-.++...+.. +..|+.+-.+.|..+..++...+|.+|.+.|..|..
T Consensus 132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 467788888887 589999999998888887643221 123444445666667777888999999888877764
No 97
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=31.13 E-value=1.5e+02 Score=35.18 Aligned_cols=89 Identities=18% Similarity=0.071 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHhhccCCC--chHHHHHHHHHHHHh-cCChhHHHHHHHhHHHHHHhhcccCCCC
Q 005238 31 YKLEEICELLRSSHVSIGKEVSDFILKRLEHKSP--VVKQKALRLIKYSVG-KSGTDFRREMQRHSAVVRQLFHYKGQLD 107 (706)
Q Consensus 31 Yl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksp--hVKlKaLKILkyLc~-~Gs~~F~r~lqrns~~Ik~~~~f~GppD 107 (706)
+.+.+|++............|+..|++.|+++.+ .|+..+++.|..++. .|...|...+..-...+-.+.. |
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~-----d 530 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG-----D 530 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHT-----C
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHc-----c
Confidence 3455555543222223467899999999998875 899999999999986 4555587777666655544431 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhh
Q 005238 108 PLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 108 pl~Gd~l~q~VR~aAqEll~aLF 130 (706)
.+..||.+|-.++..|.
T Consensus 531 ------~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 531 ------PFYKITSEALLVTQQLV 547 (1230)
T ss_dssp ------SSHHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHH
Confidence 13467777766666555
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=30.13 E-value=63 Score=34.40 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=48.4
Q ss_pred CCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhh
Q 005238 26 KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLF 100 (706)
Q Consensus 26 ~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~ 100 (706)
.|-|-|-=.=|.-++.--..+.++.|..+|.+-|.+++|+|+.||+=..-||+...++-.++| ...++++.
T Consensus 115 ~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~----~~~l~~ll 185 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW----VNEAQEAA 185 (355)
T ss_dssp SSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT----HHHHHHHT
T ss_pred CCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH----HHHHHHHh
Confidence 344544434444444333346788999999999999999999999999999998865544433 33445554
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=29.95 E-value=78 Score=36.65 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLF 130 (706)
-+.-|+.-|+..+-||++-+|++|..||.......+..+.....-|-.+..+=. +-.+.||.+|--+|..|-
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~--------d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA--------DSREVIRNDGVLLLQALT 194 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG--------CSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh--------CchHHHHHHHHHHHHHHh
Confidence 345566677889999999999999999999888888888887777777775442 226889999999998887
Q ss_pred cCC
Q 005238 131 SEE 133 (706)
Q Consensus 131 sd~ 133 (706)
.++
T Consensus 195 ~~n 197 (651)
T 3grl_A 195 RSN 197 (651)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 100
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=29.80 E-value=1.9e+02 Score=29.74 Aligned_cols=64 Identities=13% Similarity=0.310 Sum_probs=45.0
Q ss_pred cCCCHHHHHHHHHHHhh--CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh
Q 005238 284 LQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN 351 (706)
Q Consensus 284 ~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN 351 (706)
..|.+.-++.-+..... -+...+..+|..++....|.|-+|+|.+|-.||+.+.. .+.+|...+
T Consensus 37 ~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~----~~~~~l~~~ 102 (299)
T 1hx8_A 37 IGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNE----RFMQYLASS 102 (299)
T ss_dssp SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----HHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCH----HHHHHHHhC
Confidence 44555444444433222 44578899999999999999999999999999998763 345555443
No 101
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=28.68 E-value=1.2e+02 Score=33.84 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCC
Q 005238 30 VYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPL 109 (706)
Q Consensus 30 GYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl 109 (706)
||+ .|..+....+ +.+.-+...|.+-|+++++.|+.-|||.|-.+... ..+..-...|+.|.
T Consensus 90 ~Yl--~~~~~~~~~~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L--------- 151 (618)
T 1w63_A 90 GYL--GAMLLLDERQ-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLL--------- 151 (618)
T ss_dssp HHH--HHHHHCCCCH-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---------
T ss_pred HHH--HHHHHhCCCc-HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHH---------
Q ss_pred CCchhhHHHHHHHHHHHHHhh
Q 005238 110 KGDALNKAVRDMAHEAISAIF 130 (706)
Q Consensus 110 ~Gd~l~q~VR~aAqEll~aLF 130 (706)
.+....||.+|-.++-.||
T Consensus 152 --~~~~~~VRk~A~~al~~l~ 170 (618)
T 1w63_A 152 --KTSNSYLRKKAALCAVHVI 170 (618)
T ss_dssp --HSCCHHHHHHHHHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHHH
No 102
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=28.39 E-value=84 Score=35.78 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 005238 46 SIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEA 125 (706)
Q Consensus 46 s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEl 125 (706)
..+..++.+|.+.|++.++.||.-|++.|-.++......+...+. .+|..+...-. | ....||.+|-.+
T Consensus 355 ~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~---~~l~~l~~~l~--d------~~~~Vr~~a~~~ 423 (852)
T 4fdd_A 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP---ELIPHLIQCLS--D------KKALVRSITCWT 423 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH---HHHHHHHHHTT--C------SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHcC--C------CCHHHHHHHHHH
Confidence 456789999999999999999999999999988654443332222 23333333221 3 256799999998
Q ss_pred HHHhhc
Q 005238 126 ISAIFS 131 (706)
Q Consensus 126 l~aLFs 131 (706)
+..+..
T Consensus 424 l~~l~~ 429 (852)
T 4fdd_A 424 LSRYAH 429 (852)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 887765
No 103
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.20 E-value=66 Score=26.01 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=43.7
Q ss_pred hcCCcccCCCHHHHHHHHHHH--hhCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 005238 278 TYGGVRLQPTRDAIQVFLVEA--AKLDALAMSRALEAKLQSPLWQVRMKAICVLESI 332 (706)
Q Consensus 278 T~gGvr~~PSreeLq~Fl~~c--~~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaL 332 (706)
..-|.|..|.|..|-.++.+. ..+.++.|++.|.++...-+--+-.|.|-.||..
T Consensus 9 ~~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 9 KKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 345999999999999999876 4699999999998776555667778888777654
No 104
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=27.40 E-value=2.7e+02 Score=25.41 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=38.7
Q ss_pred HhhcCCcccCCCHHHHHHHHHHHhhCC----HHHHHHHHHHHhCC--chHHHHHHHH
Q 005238 276 IVTYGGVRLQPTRDAIQVFLVEAAKLD----ALAMSRALEAKLQS--PLWQVRMKAI 326 (706)
Q Consensus 276 i~T~gGvr~~PSreeLq~Fl~~c~~Ld----~e~V~elL~~KL~~--~~WQvrlKAL 326 (706)
|....|.-+.|+++.|..=+++|..+| +-+++|.+-.|... ..|+.-+.-|
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 334568899999999999999999999 67888888888732 2355544444
No 105
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.37 E-value=65 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=46.1
Q ss_pred hhcCCcccCCCHHHHHHHHHHHh--hCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 005238 277 VTYGGVRLQPTRDAIQVFLVEAA--KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (706)
Q Consensus 277 ~T~gGvr~~PSreeLq~Fl~~c~--~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl 333 (706)
+..-|.|.+|.|..|-.++.+.. -+.++.|.+.|..+...-..-+-+|.|-.|+...
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33469999999999998887654 5999999999998877777788999997776543
No 106
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=26.32 E-value=2e+02 Score=28.21 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHHHHHHhhccCCC-------chHHHHHHHHHHHHhcCChhHHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHH
Q 005238 50 EVSDFILKRLEHKSP-------VVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMA 122 (706)
Q Consensus 50 eI~dyLlkRL~~ksp-------hVKlKaLKILkyLc~~Gs~~F~r~lqrns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aA 122 (706)
.|+++|.+-..++.+ -.-..||||||.|+.. ...+..-+ .+...|..+...=. ..+-++|..|
T Consensus 47 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl-~~~~~i~~l~~~L~--------s~~~~~r~~~ 116 (233)
T 2f31_A 47 SLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTML-ETEEGILLLVRAMD--------PAVPNMMIDA 116 (233)
T ss_dssp HHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHH-TSSSHHHHHHTTCC--------TTSHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHH-cCcHHHHHHHHHhC--------CCCchHHHHH
Confidence 466666444333321 2346899999998865 34555544 34445555544332 3344899999
Q ss_pred HHHHHHhhc
Q 005238 123 HEAISAIFS 131 (706)
Q Consensus 123 qEll~aLFs 131 (706)
=|++.+|.-
T Consensus 117 leLL~~lc~ 125 (233)
T 2f31_A 117 AKLLSALCI 125 (233)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999887
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=25.90 E-value=1.5e+02 Score=34.66 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhh-------------hhcCCChhHHHHHHH
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVK-------------CSESPQSSLREKANK 372 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN~~~L~r-------------~~~s~Q~sLReKA~K 372 (706)
+|+.|..-|=++.|.+|.=|..+|=.|++..+.-. .. .-..|.+...| .++.+=+||||.|-+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-GR---~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-DI---QIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----C---CCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-ce---eccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 99999999999999999999999999998875210 00 01122333333 245677899999999
Q ss_pred HHHHh
Q 005238 373 VLSLL 377 (706)
Q Consensus 373 VL~lL 377 (706)
+|..|
T Consensus 251 tLGaL 255 (800)
T 3oc3_A 251 LLSRI 255 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99888
No 108
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.16 E-value=78 Score=28.86 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=47.0
Q ss_pred HHhhcCCcccCCCHHHHHHHHHHHh-hCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 005238 275 TIVTYGGVRLQPTRDAIQVFLVEAA-KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (706)
Q Consensus 275 ~i~T~gGvr~~PSreeLq~Fl~~c~-~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl 333 (706)
+++..-|.|.+|.|..|-.++.+.. -+.++.|.+.|..+...-..-+-+|.|-.|+...
T Consensus 11 ~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3345569999999999999988753 4899999999988776677789999997776543
No 109
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=25.02 E-value=1.8e+02 Score=31.35 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=47.1
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcC----C-hhHHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKS----G-TDFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~G----s-~~F~r~lqrn--s~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAq 123 (706)
++..|.+-|+.+.+.|..-+|..|..|+..+ . ..|.+.+.+. ...|..|+++ .+..|++.|.
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~-----------~n~~i~~~A~ 489 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-----------ENESVYKASL 489 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC-----------SSHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC-----------CCHHHHHHHH
Confidence 3567888888888888888999988887532 2 3333333221 2345555532 2567999999
Q ss_pred HHHHHhhcC
Q 005238 124 EAISAIFSE 132 (706)
Q Consensus 124 Ell~aLFsd 132 (706)
++|+--|++
T Consensus 490 ~iie~yf~~ 498 (529)
T 3tpo_A 490 NLIEKYFSV 498 (529)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHCCC
Confidence 999999983
No 110
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=24.10 E-value=1.7e+02 Score=29.72 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhc-cCCCchHHHHHHHHHHHHhcCC-hhHHHHHHHhHHHHHHhhcccCC----CCCCCCchhhHHHHHH
Q 005238 48 GKEVSDFILKRLE-HKSPVVKQKALRLIKYSVGKSG-TDFRREMQRHSAVVRQLFHYKGQ----LDPLKGDALNKAVRDM 121 (706)
Q Consensus 48 ~~eI~dyLlkRL~-~ksphVKlKaLKILkyLc~~Gs-~~F~r~lqrns~~Ik~~~~f~Gp----pDpl~Gd~l~q~VR~a 121 (706)
.+.+|..++.|.+ -++|-+ .|.|+|+.|+-.+|- .....|+++-...||=-+-.+-+ ..| +|-+++++=|+.
T Consensus 11 l~~~~~a~ma~A~~~kDp~~-~KlL~v~~W~~knGl~D~mynfs~~Dp~g~Km~r~ist~P~~a~kp-~GPtq~~AQ~~K 88 (242)
T 3zed_D 11 LQGLLQATMARAKEVKDAEV-FKLLKLMSWTRKNDLTDHMYEWSKEDPDAIKFGRLVSTPPKHQEKP-KGPDQHTAQEAK 88 (242)
T ss_pred HHHHHHHHHHHHhhccCHHH-HHHHHHHHHHhccCHHHHHHHHHhhCccHHHHHHHhcCCccccCCC-CCCCHHHHHHHH
Confidence 4677888888877 466888 999999999999985 45566777666544432222222 234 777888887777
Q ss_pred HHHHHHH
Q 005238 122 AHEAISA 128 (706)
Q Consensus 122 AqEll~a 128 (706)
|.-+-.-
T Consensus 89 AvRIS~d 95 (242)
T 3zed_D 89 ATRISLD 95 (242)
T ss_pred HHHHHHH
Confidence 7665443
No 111
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=24.02 E-value=1.7e+02 Score=30.52 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHh
Q 005238 307 SRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLL 377 (706)
Q Consensus 307 ~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lL 377 (706)
++.|..-|.+....++..|..+|..|... . .+...+.+. .+.|+++..++...||.+|..+|..|
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---~---~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELAQD---K---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTS---H---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHhcC---H---HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 35566666788888999998888887642 1 223445444 48899999999999999999999865
No 112
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=23.51 E-value=1.8e+02 Score=31.96 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHhcccc
Q 005238 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLLGEEQ 381 (706)
Q Consensus 306 V~elL~~KL~~~~WQvrlKALcvLEaLl~s~~~d~~~~v~~yF~eN--~~~L~r~~~s~Q~sLReKA~KVL~lLg~~~ 381 (706)
+++.|.+-|.+....++..|+++|..|... . .+.+.+.+. .+.|+++..+....+|..|.++|..|....
T Consensus 458 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~---~---~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQD---K---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---H---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---H---HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 455666666778888999999999998753 1 234555554 478889999999999999999999986654
No 113
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.47 E-value=72 Score=29.91 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHH-hhCCHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHH
Q 005238 273 LETIVTYGGVRLQPTRDAIQVFLVEA-AKLDALAMSRALEAK--LQSPLWQVRMKAICVLESIL 333 (706)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c-~~Ld~e~V~elL~~K--L~~~~WQvrlKALcvLEaLl 333 (706)
+++++..-|.|.+|.|..|-.++.+. .-+.++.|.+.|..+ ...-.--+-+|+|-.|+...
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 45556667999999999998888776 459999999999988 65666678899997776543
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.20 E-value=1.9e+02 Score=32.64 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=47.9
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH---HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005238 55 ILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA---VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (706)
Q Consensus 55 LlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~---~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~aLFs 131 (706)
|+++|++.++.+|..|+..|..||. .+..++.+.+.-- +|+.+.. | ....||.+|-.++..|..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~-----D------~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLT-----D------NNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTT-----C------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcC-----C------CCHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999995 5666666665543 3444431 2 245699999999988766
Q ss_pred CC
Q 005238 132 EE 133 (706)
Q Consensus 132 d~ 133 (706)
++
T Consensus 106 ~~ 107 (684)
T 4gmo_A 106 EE 107 (684)
T ss_dssp HS
T ss_pred hc
Confidence 43
No 115
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=20.64 E-value=2.1e+02 Score=24.24 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCCchhhHHHHHHHHhhCccchhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHHhHH
Q 005238 26 KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (706)
Q Consensus 26 ~PtPGYl~~EIa~~t~~S~~s~~~eI~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqrns~ 94 (706)
..-||+.+.|=-+... ..+.|||+|+.|- ..+|.||.-|.+.-.++.--|++|.++
T Consensus 12 ~~~~~~~~~eeWkhi~----~mLnCI~~MVEKT---------rRsltvLrRcQe~dReeln~W~Rr~~d 67 (72)
T 1wq6_A 12 HRLTDREWAEEWKHLD----HLLNCIMDMVEKT---------RRSLTVLRRCQEADREELNYWIRRYSD 67 (72)
T ss_dssp CSCCHHHHHHHHHHHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccHHHHHHhHH----HHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4456777766444432 3678999998752 457888886555468889999999875
No 116
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.47 E-value=1.2e+02 Score=27.80 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHHh-hCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 005238 273 LETIVTYGGVRLQPTRDAIQVFLVEAA-KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (706)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c~-~Ld~e~V~elL~~KL~~~~WQvrlKALcvLEaLl 333 (706)
+++++..-|.|.+|.|..|-.++.+.. -+.++.|.+.|..+...-.--+-+|.|-.|+...
T Consensus 14 ~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455679999999999999988763 4999999999988876666778899997776543
No 117
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=20.39 E-value=2e+02 Score=33.06 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhHHHHHHH--hHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHH
Q 005238 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQR--HSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISA 128 (706)
Q Consensus 51 I~dyLlkRL~~ksphVKlKaLKILkyLc~~Gs~~F~r~lqr--ns~~Ik~~~~f~GppDpl~Gd~l~q~VR~aAqEll~a 128 (706)
++..|.+-|.+..+.|+..|+++|..|+ ..++.+..+.+ -...+..+. ...+..||..|..+|..
T Consensus 594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~--~~~~~~~~i~~~g~i~~L~~Ll-----------~~~~~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 594 TIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELL-----------HSRNEGVATYAAAVLFR 660 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHGG-----------GCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHCCCHHHHHHHH-----------cCCCHHHHHHHHHHHHH
Q ss_pred hhcCCC
Q 005238 129 IFSEEN 134 (706)
Q Consensus 129 LFsd~~ 134 (706)
|..+..
T Consensus 661 l~~~~~ 666 (780)
T 2z6g_A 661 MSEDKP 666 (780)
T ss_dssp HHTTSC
T ss_pred HHcCCh
Done!