Query 005240
Match_columns 706
No_of_seqs 296 out of 3364
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 20:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 7.9E-42 1.7E-46 380.0 46.7 532 31-697 13-619 (620)
2 PRK10115 protease 2; Provision 100.0 6.9E-36 1.5E-40 333.8 52.5 521 40-697 79-678 (686)
3 KOG2281 Dipeptidyl aminopeptid 100.0 8.9E-34 1.9E-38 288.4 32.2 293 376-693 513-866 (867)
4 KOG2100 Dipeptidyl aminopeptid 100.0 1.2E-26 2.7E-31 259.6 46.3 346 304-695 345-748 (755)
5 COG1770 PtrB Protease II [Amin 99.9 1.1E-21 2.4E-26 204.2 46.3 468 40-638 83-563 (682)
6 PRK01029 tolB translocation pr 99.9 1.2E-23 2.6E-28 224.1 28.9 265 35-414 141-414 (428)
7 PRK01029 tolB translocation pr 99.9 7.8E-24 1.7E-28 225.6 26.7 237 4-343 164-412 (428)
8 PRK03629 tolB translocation pr 99.9 3.5E-23 7.7E-28 221.6 27.7 235 3-341 177-413 (429)
9 PRK05137 tolB translocation pr 99.9 9.9E-23 2.1E-27 219.7 29.3 254 42-411 165-420 (435)
10 PRK04043 tolB translocation pr 99.9 5.3E-23 1.2E-27 217.4 26.2 231 5-334 169-402 (419)
11 PRK05137 tolB translocation pr 99.9 5.8E-23 1.3E-27 221.5 27.0 235 4-341 181-419 (435)
12 PRK03629 tolB translocation pr 99.9 1.6E-22 3.5E-27 216.6 29.3 249 43-411 164-414 (429)
13 PRK04792 tolB translocation pr 99.9 3.1E-22 6.7E-27 215.2 27.4 228 5-334 198-427 (448)
14 PRK04043 tolB translocation pr 99.9 7.1E-22 1.5E-26 208.9 28.7 247 43-412 155-409 (419)
15 PRK02889 tolB translocation pr 99.9 8.4E-22 1.8E-26 211.4 29.1 226 43-373 164-391 (427)
16 PRK02889 tolB translocation pr 99.9 5.1E-22 1.1E-26 213.0 26.7 227 5-333 176-404 (427)
17 PRK04922 tolB translocation pr 99.9 1.2E-21 2.7E-26 210.8 28.7 252 42-412 167-420 (433)
18 PRK04792 tolB translocation pr 99.9 2E-21 4.3E-26 208.9 29.7 229 42-372 182-412 (448)
19 PRK00178 tolB translocation pr 99.9 2.6E-21 5.6E-26 209.2 29.3 252 41-411 161-414 (430)
20 PRK04922 tolB translocation pr 99.9 1.2E-21 2.7E-26 210.9 25.9 233 5-341 184-418 (433)
21 PRK00178 tolB translocation pr 99.9 1.8E-21 3.9E-26 210.3 26.7 226 7-334 181-408 (430)
22 PF00326 Peptidase_S9: Prolyl 99.9 3.2E-22 7E-27 194.5 11.7 152 546-697 5-212 (213)
23 PRK01742 tolB translocation pr 99.9 2.1E-19 4.6E-24 193.1 27.7 222 42-372 168-391 (429)
24 KOG2237 Predicted serine prote 99.9 4.8E-18 1E-22 175.6 35.3 244 437-695 392-706 (712)
25 PRK01742 tolB translocation pr 99.8 2.2E-19 4.9E-24 192.9 26.5 226 5-341 184-411 (429)
26 PF00930 DPPIV_N: Dipeptidyl p 99.8 1.4E-18 3E-23 181.7 27.1 303 39-452 1-353 (353)
27 COG4946 Uncharacterized protei 99.8 1.7E-17 3.6E-22 163.9 27.8 371 6-471 60-488 (668)
28 TIGR02800 propeller_TolB tol-p 99.8 1.1E-17 2.3E-22 180.8 28.8 232 39-373 152-385 (417)
29 COG1505 Serine proteases of th 99.8 5.8E-19 1.3E-23 181.6 16.1 245 433-695 346-647 (648)
30 TIGR02800 propeller_TolB tol-p 99.8 8.4E-18 1.8E-22 181.7 26.0 229 4-334 169-399 (417)
31 COG0823 TolB Periplasmic compo 99.8 1.3E-17 2.8E-22 174.9 22.4 211 30-334 192-404 (425)
32 PF14583 Pectate_lyase22: Olig 99.7 1.5E-15 3.3E-20 152.0 29.3 341 19-460 21-383 (386)
33 COG0823 TolB Periplasmic compo 99.7 2.9E-16 6.2E-21 164.8 25.0 218 59-372 170-389 (425)
34 PF00930 DPPIV_N: Dipeptidyl p 99.7 2.7E-16 6E-21 164.5 22.5 299 3-371 21-346 (353)
35 COG0412 Dienelactone hydrolase 99.7 4.4E-16 9.6E-21 151.4 20.2 192 483-696 3-235 (236)
36 PF01738 DLH: Dienelactone hyd 99.7 4.2E-16 9E-21 152.0 14.7 180 495-695 1-218 (218)
37 PF05448 AXE1: Acetyl xylan es 99.6 7.1E-15 1.5E-19 149.1 17.4 192 478-694 52-320 (320)
38 TIGR02821 fghA_ester_D S-formy 99.6 3E-14 6.5E-19 143.8 21.5 197 480-695 11-275 (275)
39 PRK10162 acetyl esterase; Prov 99.6 4.9E-14 1.1E-18 145.0 20.3 189 481-696 56-317 (318)
40 PLN02442 S-formylglutathione h 99.6 9E-14 1.9E-18 140.5 21.1 196 480-695 16-281 (283)
41 PRK10566 esterase; Provisional 99.6 7.5E-14 1.6E-18 139.4 20.1 175 494-695 11-249 (249)
42 PRK05077 frsA fermentation/res 99.6 1.7E-13 3.7E-18 145.4 21.1 189 480-695 166-413 (414)
43 PLN02298 hydrolase, alpha/beta 99.5 9E-13 1.9E-17 137.4 22.0 140 476-636 26-168 (330)
44 PF12715 Abhydrolase_7: Abhydr 99.5 1.2E-13 2.5E-18 137.9 12.1 154 478-636 84-259 (390)
45 COG2706 3-carboxymuconate cycl 99.5 4.2E-11 9E-16 116.6 27.9 291 5-411 16-331 (346)
46 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 5.3E-11 1.1E-15 122.3 31.0 267 5-411 11-287 (300)
47 PF14583 Pectate_lyase22: Olig 99.5 1.6E-11 3.4E-16 123.5 25.4 292 4-373 59-371 (386)
48 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.1E-10 2.3E-15 120.0 32.8 275 61-468 10-288 (300)
49 KOG0271 Notchless-like WD40 re 99.5 5.3E-12 1.2E-16 122.3 20.4 283 32-442 117-467 (480)
50 COG4946 Uncharacterized protei 99.5 5.4E-11 1.2E-15 118.4 26.1 280 22-452 219-514 (668)
51 PRK13604 luxD acyl transferase 99.4 4E-12 8.6E-17 125.8 17.7 129 485-638 12-142 (307)
52 PLN02385 hydrolase; alpha/beta 99.4 1.1E-11 2.3E-16 130.2 22.0 133 482-637 61-197 (349)
53 COG0657 Aes Esterase/lipase [L 99.4 5.1E-12 1.1E-16 130.4 17.0 183 489-693 58-309 (312)
54 KOG1515 Arylacetamide deacetyl 99.4 1.7E-11 3.6E-16 123.7 19.6 194 479-694 60-335 (336)
55 COG3458 Acetyl esterase (deace 99.4 2.3E-12 4.9E-17 120.4 11.8 140 478-638 52-211 (321)
56 KOG1455 Lysophospholipase [Lip 99.4 2.2E-11 4.7E-16 116.9 18.1 138 479-638 24-165 (313)
57 PHA02857 monoglyceride lipase; 99.4 3.9E-11 8.5E-16 121.8 20.9 124 489-638 7-133 (276)
58 PF10282 Lactonase: Lactonase, 99.4 1.8E-10 3.8E-15 120.3 25.6 291 5-410 13-331 (345)
59 COG4099 Predicted peptidase [G 99.4 4E-12 8.6E-17 119.9 10.5 188 491-693 170-384 (387)
60 TIGR01840 esterase_phb esteras 99.3 5.7E-12 1.2E-16 122.0 11.3 125 497-637 1-130 (212)
61 PRK10749 lysophospholipase L2; 99.3 6.6E-11 1.4E-15 123.1 20.0 130 481-637 29-166 (330)
62 PRK11460 putative hydrolase; P 99.3 4.7E-11 1E-15 116.9 17.8 112 581-697 82-211 (232)
63 PRK11028 6-phosphogluconolacto 99.3 1.2E-09 2.6E-14 113.9 29.6 265 4-371 11-292 (330)
64 PRK10439 enterobactin/ferric e 99.3 1.3E-10 2.7E-15 122.6 21.4 175 480-675 178-393 (411)
65 KOG4391 Predicted alpha/beta h 99.3 1.7E-11 3.6E-16 110.3 10.6 197 471-697 43-285 (300)
66 COG1647 Esterase/lipase [Gener 99.3 6E-11 1.3E-15 108.0 14.3 154 514-692 16-242 (243)
67 TIGR03101 hydr2_PEP hydrolase, 99.3 1.7E-10 3.6E-15 113.9 17.7 132 484-638 2-135 (266)
68 TIGR03100 hydr1_PEP hydrolase, 99.3 3.4E-10 7.3E-15 114.2 20.3 132 483-637 3-134 (274)
69 PF06500 DUF1100: Alpha/beta h 99.3 5.6E-11 1.2E-15 121.3 14.4 136 479-640 162-299 (411)
70 cd00200 WD40 WD40 domain, foun 99.3 4E-09 8.7E-14 106.5 28.2 264 32-445 11-280 (289)
71 PF10503 Esterase_phd: Esteras 99.3 2.1E-11 4.6E-16 115.8 10.3 126 496-637 2-132 (220)
72 TIGR00976 /NonD putative hydro 99.3 2.7E-11 5.8E-16 134.5 12.8 131 488-638 2-133 (550)
73 KOG3101 Esterase D [General fu 99.3 1.4E-11 2.9E-16 110.4 7.9 139 492-645 25-184 (283)
74 PF07859 Abhydrolase_3: alpha/ 99.3 1.1E-11 2.3E-16 120.4 8.0 140 516-675 1-210 (211)
75 PLN00021 chlorophyllase 99.3 3.2E-10 6.8E-15 115.2 18.6 176 493-699 37-288 (313)
76 KOG0318 WD40 repeat stress pro 99.3 8.7E-09 1.9E-13 104.4 28.3 280 5-371 39-339 (603)
77 PRK05371 x-prolyl-dipeptidyl a 99.2 5.7E-10 1.2E-14 126.5 20.8 150 546-699 270-524 (767)
78 PF02897 Peptidase_S9_N: Proly 99.2 7E-09 1.5E-13 111.8 28.2 319 40-469 76-413 (414)
79 COG3509 LpqC Poly(3-hydroxybut 99.2 2E-10 4.3E-15 109.7 14.0 130 491-637 43-179 (312)
80 KOG0318 WD40 repeat stress pro 99.2 1.1E-08 2.4E-13 103.7 26.9 63 32-105 192-254 (603)
81 PLN02652 hydrolase; alpha/beta 99.2 1.8E-09 3.9E-14 113.8 22.2 131 481-637 109-245 (395)
82 KOG0291 WD40-repeat-containing 99.2 8.3E-09 1.8E-13 108.8 26.5 296 32-465 309-617 (893)
83 KOG0293 WD40 repeat-containing 99.2 3.1E-10 6.7E-15 111.3 14.9 196 31-333 225-426 (519)
84 KOG4497 Uncharacterized conser 99.2 1.3E-09 2.8E-14 104.0 17.7 192 35-331 13-209 (447)
85 COG2267 PldB Lysophospholipase 99.2 1.2E-09 2.6E-14 110.6 18.8 190 481-696 8-296 (298)
86 KOG0272 U4/U6 small nuclear ri 99.2 1.5E-09 3.2E-14 107.0 18.5 193 32-330 177-375 (459)
87 PRK11028 6-phosphogluconolacto 99.2 4.4E-08 9.6E-13 102.1 31.0 157 175-371 80-246 (330)
88 KOG1407 WD40 repeat protein [F 99.2 5.8E-09 1.3E-13 96.7 20.7 271 32-450 22-296 (313)
89 COG2945 Predicted hydrolase of 99.2 4.6E-10 1E-14 100.0 13.0 187 482-692 4-205 (210)
90 KOG0279 G protein beta subunit 99.2 3.6E-08 7.8E-13 92.4 25.8 198 32-334 17-224 (315)
91 KOG0271 Notchless-like WD40 re 99.2 1.4E-09 2.9E-14 105.9 16.9 98 245-370 371-469 (480)
92 COG2706 3-carboxymuconate cycl 99.2 1E-07 2.2E-12 93.2 29.9 313 44-469 3-332 (346)
93 PF02129 Peptidase_S15: X-Pro 99.1 3.3E-10 7.1E-15 114.2 12.8 139 491-641 1-140 (272)
94 KOG0315 G-protein beta subunit 99.1 1.6E-08 3.5E-13 93.2 21.3 270 5-413 20-298 (311)
95 KOG0273 Beta-transducin family 99.1 3.2E-09 7E-14 106.1 18.0 267 27-372 232-513 (524)
96 PRK13616 lipoprotein LpqB; Pro 99.1 6.7E-09 1.4E-13 114.1 21.6 129 19-194 337-467 (591)
97 KOG0266 WD40 repeat-containing 99.1 2.4E-08 5.2E-13 108.2 25.7 180 32-317 161-353 (456)
98 PF10282 Lactonase: Lactonase, 99.1 4.8E-08 1E-12 102.1 27.1 302 62-469 15-333 (345)
99 KOG0286 G-protein beta subunit 99.1 8.3E-08 1.8E-12 90.6 25.1 228 32-371 57-292 (343)
100 PF02230 Abhydrolase_2: Phosph 99.1 2.3E-09 5E-14 104.1 15.2 109 581-695 85-216 (216)
101 KOG0293 WD40 repeat-containing 99.1 5.5E-09 1.2E-13 102.7 16.0 225 32-371 271-501 (519)
102 PF08662 eIF2A: Eukaryotic tra 99.0 8.2E-09 1.8E-13 97.7 16.6 122 155-317 37-162 (194)
103 PF00756 Esterase: Putative es 99.0 1.5E-10 3.3E-15 115.6 5.0 131 491-639 4-152 (251)
104 COG2382 Fes Enterochelin ester 99.0 3.3E-09 7.1E-14 102.5 13.6 189 481-695 68-296 (299)
105 KOG0305 Anaphase promoting com 99.0 3.3E-08 7.3E-13 103.2 21.9 249 5-371 197-450 (484)
106 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.4E-07 7.3E-12 93.4 28.5 93 5-104 27-122 (352)
107 TIGR01607 PST-A Plasmodium sub 99.0 8.7E-09 1.9E-13 106.8 17.5 136 487-636 2-184 (332)
108 PLN02872 triacylglycerol lipas 99.0 8.1E-09 1.8E-13 108.4 17.2 144 479-636 41-196 (395)
109 cd00312 Esterase_lipase Estera 99.0 1.8E-09 3.9E-14 119.2 12.9 132 489-638 75-214 (493)
110 KOG0315 G-protein beta subunit 99.0 1.2E-07 2.7E-12 87.4 22.4 270 59-467 17-295 (311)
111 KOG2055 WD40 repeat protein [G 99.0 3.1E-08 6.7E-13 99.0 19.7 258 5-371 235-501 (514)
112 PF08840 BAAT_C: BAAT / Acyl-C 99.0 1.6E-09 3.4E-14 104.2 10.6 111 585-696 5-212 (213)
113 PF02897 Peptidase_S9_N: Proly 99.0 1.3E-07 2.8E-12 101.9 25.6 267 35-410 128-411 (414)
114 KOG0279 G protein beta subunit 99.0 4.9E-08 1.1E-12 91.6 18.9 255 7-371 40-302 (315)
115 PF02239 Cytochrom_D1: Cytochr 99.0 4.1E-07 9E-12 95.0 27.7 194 43-333 5-203 (369)
116 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.6E-06 3.5E-11 88.5 30.8 291 62-466 27-336 (352)
117 KOG0973 Histone transcription 99.0 3.7E-08 7.9E-13 108.6 20.0 155 32-268 71-245 (942)
118 PF12740 Chlorophyllase2: Chlo 99.0 6.5E-09 1.4E-13 100.0 12.6 114 496-637 5-131 (259)
119 cd00200 WD40 WD40 domain, foun 99.0 4.2E-07 9E-12 91.7 26.3 244 5-371 31-280 (289)
120 PF08662 eIF2A: Eukaryotic tra 99.0 2.6E-08 5.7E-13 94.2 16.0 150 3-223 35-185 (194)
121 PF12695 Abhydrolase_5: Alpha/ 98.9 1.4E-08 3E-13 91.9 13.5 115 546-673 17-145 (145)
122 COG0400 Predicted esterase [Ge 98.9 4.1E-08 8.8E-13 92.4 16.2 108 582-695 79-206 (207)
123 KOG0272 U4/U6 small nuclear ri 98.9 1.4E-08 3E-13 100.3 13.1 213 6-328 242-458 (459)
124 COG2272 PnbA Carboxylesterase 98.9 6.6E-09 1.4E-13 107.0 10.0 131 490-638 77-218 (491)
125 KOG1446 Histone H3 (Lys4) meth 98.9 3.5E-06 7.6E-11 80.9 27.6 253 30-413 14-272 (311)
126 KOG2314 Translation initiation 98.9 9.4E-07 2E-11 90.5 25.1 305 31-448 250-559 (698)
127 KOG1552 Predicted alpha/beta h 98.9 5.1E-08 1.1E-12 92.1 14.7 182 481-695 34-253 (258)
128 KOG2096 WD40 repeat protein [G 98.9 4.7E-07 1E-11 86.5 20.6 194 179-448 192-395 (420)
129 KOG1407 WD40 repeat protein [F 98.8 3.9E-07 8.4E-12 84.8 18.8 204 6-321 88-295 (313)
130 KOG2055 WD40 repeat protein [G 98.8 3.5E-07 7.6E-12 91.6 19.1 235 29-371 212-454 (514)
131 PF03403 PAF-AH_p_II: Platelet 98.8 7E-08 1.5E-12 100.8 15.0 170 512-697 99-361 (379)
132 TIGR03343 biphenyl_bphD 2-hydr 98.8 7.3E-08 1.6E-12 98.1 15.0 79 549-636 54-135 (282)
133 PRK10673 acyl-CoA esterase; Pr 98.8 1.6E-07 3.4E-12 94.0 17.1 97 513-634 16-113 (255)
134 PF00135 COesterase: Carboxyle 98.8 1.8E-08 3.8E-13 112.9 11.2 134 489-637 105-245 (535)
135 KOG0973 Histone transcription 98.8 3.5E-07 7.6E-12 101.0 20.7 117 175-331 130-252 (942)
136 COG2936 Predicted acyl esteras 98.8 2.6E-08 5.5E-13 105.6 10.9 143 479-639 16-161 (563)
137 KOG0291 WD40-repeat-containing 98.8 1.5E-06 3.4E-11 92.1 23.8 183 32-317 352-539 (893)
138 PF02239 Cytochrom_D1: Cytochr 98.8 3.5E-07 7.6E-12 95.5 18.8 286 5-410 58-354 (369)
139 PRK10115 protease 2; Provision 98.8 3.3E-06 7.2E-11 95.7 28.0 208 32-333 128-347 (686)
140 KOG3043 Predicted hydrolase re 98.8 1.7E-08 3.7E-13 92.4 7.4 148 546-696 58-242 (242)
141 KOG0273 Beta-transducin family 98.8 1.3E-06 2.8E-11 87.9 21.2 298 32-466 180-488 (524)
142 TIGR03611 RutD pyrimidine util 98.8 1.9E-07 4.2E-12 93.2 15.9 99 513-636 13-114 (257)
143 TIGR03695 menH_SHCHC 2-succiny 98.8 1.8E-07 3.9E-12 92.7 15.2 99 514-636 2-104 (251)
144 KOG0266 WD40 repeat-containing 98.7 1.6E-06 3.5E-11 93.9 23.1 197 32-334 205-411 (456)
145 KOG0263 Transcription initiati 98.7 2.8E-07 6E-12 98.4 15.8 209 16-333 439-650 (707)
146 KOG0645 WD40 repeat protein [G 98.7 2.1E-05 4.7E-10 73.9 26.2 198 32-333 16-230 (312)
147 TIGR02427 protocat_pcaD 3-oxoa 98.7 2.6E-07 5.6E-12 91.7 14.9 75 552-635 36-112 (251)
148 PLN02824 hydrolase, alpha/beta 98.7 9.5E-07 2E-11 90.5 18.8 98 514-636 30-136 (294)
149 PRK10985 putative hydrolase; P 98.7 1.9E-07 4.2E-12 96.8 13.6 132 487-638 36-169 (324)
150 TIGR03056 bchO_mg_che_rel puta 98.7 6E-07 1.3E-11 91.0 17.1 98 514-636 29-129 (278)
151 COG5354 Uncharacterized protei 98.7 6.3E-06 1.4E-10 84.0 22.8 283 32-371 34-334 (561)
152 PTZ00421 coronin; Provisional 98.7 1.6E-05 3.5E-10 86.2 27.3 150 175-371 126-278 (493)
153 KOG0263 Transcription initiati 98.6 1.3E-06 2.9E-11 93.3 17.9 144 175-371 494-638 (707)
154 KOG0286 G-protein beta subunit 98.6 4.6E-06 1E-10 79.1 19.4 219 5-327 119-342 (343)
155 COG2819 Predicted hydrolase of 98.6 1.7E-06 3.8E-11 82.8 16.2 97 592-692 127-259 (264)
156 PF07224 Chlorophyllase: Chlor 98.6 3.7E-07 8.1E-12 85.7 11.3 117 493-637 31-157 (307)
157 KOG4178 Soluble epoxide hydrol 98.6 3.9E-06 8.6E-11 82.6 18.9 100 513-636 44-147 (322)
158 KOG0296 Angio-associated migra 98.6 3.9E-05 8.4E-10 75.2 25.2 249 31-371 107-387 (399)
159 PLN02511 hydrolase 98.6 7.4E-07 1.6E-11 94.5 14.4 138 481-638 70-211 (388)
160 KOG1446 Histone H3 (Lys4) meth 98.6 0.00019 4.2E-09 69.2 28.9 265 157-504 36-304 (311)
161 KOG0305 Anaphase promoting com 98.6 9.3E-06 2E-10 85.2 21.9 222 33-371 180-406 (484)
162 PLN00181 protein SPA1-RELATED; 98.6 6.1E-05 1.3E-09 88.2 31.5 163 157-371 555-727 (793)
163 KOG0772 Uncharacterized conser 98.6 1.6E-05 3.5E-10 81.0 22.4 245 32-371 169-428 (641)
164 PRK13616 lipoprotein LpqB; Pro 98.6 2.2E-06 4.7E-11 94.5 17.8 145 157-334 379-529 (591)
165 PTZ00421 coronin; Provisional 98.6 1.6E-05 3.4E-10 86.3 24.0 199 32-333 77-291 (493)
166 TIGR02240 PHA_depoly_arom poly 98.5 6.1E-06 1.3E-10 83.6 19.2 75 553-636 49-125 (276)
167 KOG3847 Phospholipase A2 (plat 98.5 9.2E-07 2E-11 84.9 12.0 171 510-696 115-373 (399)
168 KOG2314 Translation initiation 98.5 2.3E-05 5E-10 80.6 22.1 267 6-371 283-556 (698)
169 COG0627 Predicted esterase [Ge 98.5 2.5E-06 5.4E-11 86.0 14.8 100 595-697 143-314 (316)
170 PLN02679 hydrolase, alpha/beta 98.5 9.6E-06 2.1E-10 85.4 20.0 74 553-635 112-189 (360)
171 PTZ00420 coronin; Provisional 98.5 0.00016 3.4E-09 79.2 28.9 118 175-333 126-249 (568)
172 PRK14875 acetoin dehydrogenase 98.5 4.2E-06 9.2E-11 88.9 16.8 75 553-636 155-231 (371)
173 TIGR01836 PHA_synth_III_C poly 98.5 1.6E-06 3.5E-11 91.0 13.3 89 545-638 84-172 (350)
174 PRK00870 haloalkane dehalogena 98.5 2E-06 4.2E-11 88.5 13.4 125 481-635 20-148 (302)
175 PTZ00420 coronin; Provisional 98.5 4.5E-05 9.7E-10 83.4 24.1 114 32-221 76-201 (568)
176 KOG4409 Predicted hydrolase/ac 98.4 3.9E-06 8.5E-11 82.8 14.0 126 481-636 66-194 (365)
177 PF06433 Me-amine-dh_H: Methyl 98.4 0.0002 4.2E-09 71.6 25.4 218 177-467 97-327 (342)
178 PF12697 Abhydrolase_6: Alpha/ 98.4 1.2E-06 2.6E-11 85.3 10.0 82 547-638 17-102 (228)
179 TIGR01249 pro_imino_pep_1 prol 98.4 1.7E-06 3.8E-11 89.0 11.3 117 486-635 8-128 (306)
180 KOG2139 WD40 repeat protein [G 98.4 5.9E-06 1.3E-10 80.6 13.7 110 27-197 192-303 (445)
181 TIGR01738 bioH putative pimelo 98.4 5E-06 1.1E-10 82.1 13.9 72 553-636 28-99 (245)
182 KOG0275 Conserved WD40 repeat- 98.4 6.4E-06 1.4E-10 78.8 13.5 252 31-414 214-478 (508)
183 COG4188 Predicted dienelactone 98.4 1.8E-06 4E-11 86.4 10.2 126 482-623 38-180 (365)
184 PF08538 DUF1749: Protein of u 98.4 3.1E-06 6.8E-11 83.3 11.7 110 514-640 34-151 (303)
185 KOG2315 Predicted translation 98.4 5.5E-05 1.2E-09 78.3 20.7 236 4-330 145-390 (566)
186 KOG0265 U5 snRNP-specific prot 98.3 0.00021 4.5E-09 68.5 22.4 232 32-371 49-285 (338)
187 TIGR01250 pro_imino_pep_2 prol 98.3 6.3E-06 1.4E-10 83.7 13.5 78 550-636 48-130 (288)
188 KOG0282 mRNA splicing factor [ 98.3 7.2E-06 1.6E-10 82.9 13.0 221 6-334 238-464 (503)
189 KOG0284 Polyadenylation factor 98.3 1.2E-05 2.5E-10 79.7 14.1 193 32-333 98-295 (464)
190 PF08450 SGL: SMP-30/Gluconola 98.3 0.00017 3.7E-09 71.6 22.8 143 157-334 22-166 (246)
191 PLN00181 protein SPA1-RELATED; 98.3 0.00029 6.3E-09 82.6 27.8 194 32-333 534-739 (793)
192 KOG2315 Predicted translation 98.3 0.0013 2.9E-08 68.3 28.6 325 33-448 37-376 (566)
193 KOG4497 Uncharacterized conser 98.3 0.00015 3.2E-09 70.1 20.0 100 243-371 320-421 (447)
194 PRK11071 esterase YqiA; Provis 98.3 2.1E-05 4.6E-10 74.3 14.5 64 554-638 31-94 (190)
195 KOG1273 WD40 repeat protein [G 98.3 0.00031 6.7E-09 67.7 21.6 259 32-415 25-292 (405)
196 PLN03087 BODYGUARD 1 domain co 98.2 1.2E-05 2.5E-10 86.4 13.5 124 486-636 179-308 (481)
197 PLN02965 Probable pheophorbida 98.2 8.2E-06 1.8E-10 81.6 11.6 82 547-636 22-106 (255)
198 PF10647 Gmad1: Lipoprotein Lp 98.2 0.00023 5E-09 70.5 21.6 164 19-261 10-183 (253)
199 cd00707 Pancreat_lipase_like P 98.2 6.6E-06 1.4E-10 82.6 10.6 87 548-637 58-147 (275)
200 PLN02211 methyl indole-3-aceta 98.2 6.9E-06 1.5E-10 82.8 10.8 101 513-636 18-121 (273)
201 PLN02894 hydrolase, alpha/beta 98.2 1.7E-05 3.6E-10 84.6 14.2 102 513-636 105-210 (402)
202 KOG2096 WD40 repeat protein [G 98.2 7E-05 1.5E-09 72.0 16.6 167 157-371 209-392 (420)
203 PF08450 SGL: SMP-30/Gluconola 98.2 9.4E-05 2E-09 73.5 18.7 177 62-317 60-244 (246)
204 KOG1274 WD40 repeat protein [G 98.2 0.00017 3.7E-09 78.9 21.2 137 157-333 118-263 (933)
205 KOG0643 Translation initiation 98.2 0.00037 8E-09 65.7 20.3 215 157-440 74-301 (327)
206 KOG1274 WD40 repeat protein [G 98.2 9.4E-05 2E-09 80.9 18.9 203 5-318 76-290 (933)
207 KOG1445 Tumor-specific antigen 98.2 3.9E-05 8.4E-10 80.0 15.3 164 7-255 605-778 (1012)
208 PRK10349 carboxylesterase BioH 98.2 4.1E-05 8.8E-10 76.6 15.1 70 553-635 37-107 (256)
209 KOG0639 Transducin-like enhanc 98.2 3.2E-05 6.9E-10 78.6 13.8 222 6-332 441-665 (705)
210 KOG0772 Uncharacterized conser 98.2 0.00016 3.5E-09 74.0 18.7 236 6-333 190-446 (641)
211 KOG4627 Kynurenine formamidase 98.2 4.6E-06 1E-10 75.2 6.8 132 479-639 42-174 (270)
212 KOG0284 Polyadenylation factor 98.2 4.1E-05 8.8E-10 76.0 13.8 145 175-371 139-283 (464)
213 KOG0265 U5 snRNP-specific prot 98.2 0.00064 1.4E-08 65.2 21.1 220 6-333 70-297 (338)
214 KOG0645 WD40 repeat protein [G 98.1 0.00042 9.2E-09 65.4 19.3 150 175-371 62-214 (312)
215 KOG0296 Angio-associated migra 98.1 0.0024 5.2E-08 63.0 25.1 179 32-315 66-250 (399)
216 PF03583 LIP: Secretory lipase 98.1 3.6E-05 7.8E-10 77.8 13.4 90 546-638 17-114 (290)
217 KOG0639 Transducin-like enhanc 98.1 0.00018 3.9E-09 73.3 17.9 236 19-371 408-652 (705)
218 PRK03592 haloalkane dehalogena 98.1 1.7E-05 3.8E-10 81.2 11.3 97 514-635 28-126 (295)
219 PRK06489 hypothetical protein; 98.1 2.9E-05 6.2E-10 81.9 13.1 75 553-635 103-187 (360)
220 COG0429 Predicted hydrolase of 98.1 2.3E-05 4.9E-10 77.1 10.9 129 486-635 53-183 (345)
221 KOG1273 WD40 repeat protein [G 98.1 0.0032 6.9E-08 60.9 24.5 230 157-472 45-292 (405)
222 KOG2139 WD40 repeat protein [G 98.1 9.8E-05 2.1E-09 72.3 14.5 83 3-106 216-300 (445)
223 PLN02578 hydrolase 98.1 2.3E-05 5E-10 82.4 11.2 75 553-636 110-186 (354)
224 KOG2564 Predicted acetyltransf 98.1 2.8E-05 6E-10 73.9 10.1 115 481-623 49-167 (343)
225 PRK08775 homoserine O-acetyltr 98.0 2.2E-05 4.9E-10 82.2 10.5 77 551-636 95-172 (343)
226 PF07433 DUF1513: Protein of u 98.0 0.0018 3.8E-08 64.1 22.7 227 32-334 6-249 (305)
227 COG3386 Gluconolactonase [Carb 98.0 0.0038 8.3E-08 63.1 25.6 145 157-332 47-193 (307)
228 PLN02919 haloacid dehalogenase 98.0 0.0047 1E-07 73.7 30.2 126 177-334 685-835 (1057)
229 PRK11126 2-succinyl-6-hydroxy- 98.0 4.7E-05 1E-09 75.4 11.6 97 514-636 3-101 (242)
230 PF06433 Me-amine-dh_H: Methyl 98.0 0.0066 1.4E-07 60.9 26.3 92 6-104 18-112 (342)
231 KOG2919 Guanine nucleotide-bin 98.0 0.00046 9.9E-09 66.8 17.2 135 157-333 133-282 (406)
232 KOG0282 mRNA splicing factor [ 98.0 0.00016 3.4E-09 73.5 14.8 229 32-371 216-451 (503)
233 PRK03204 haloalkane dehalogena 98.0 4.1E-05 8.9E-10 77.9 11.2 79 552-636 57-135 (286)
234 KOG0640 mRNA cleavage stimulat 98.0 0.0011 2.4E-08 63.7 19.4 201 32-330 114-335 (430)
235 KOG2624 Triglyceride lipase-ch 98.0 4.8E-05 1E-09 79.0 11.3 141 479-637 45-199 (403)
236 KOG0306 WD40-repeat-containing 98.0 0.002 4.4E-08 69.3 22.9 198 32-333 375-583 (888)
237 KOG1838 Alpha/beta hydrolase [ 98.0 0.00014 3.1E-09 74.4 13.7 143 481-639 92-237 (409)
238 PF09752 DUF2048: Uncharacteri 97.9 0.00012 2.6E-09 73.4 12.8 123 495-636 77-209 (348)
239 TIGR03230 lipo_lipase lipoprot 97.9 0.00012 2.5E-09 77.3 13.3 79 555-636 73-153 (442)
240 PLN02980 2-oxoglutarate decarb 97.9 0.00037 8E-09 86.9 19.9 98 513-635 1371-1478(1655)
241 KOG0275 Conserved WD40 repeat- 97.9 0.00024 5.2E-09 68.3 14.0 114 175-333 264-379 (508)
242 COG5354 Uncharacterized protei 97.9 0.0014 3E-08 67.5 20.0 222 4-316 151-377 (561)
243 PLN02919 haloacid dehalogenase 97.9 0.0035 7.6E-08 74.7 26.9 128 176-335 741-891 (1057)
244 TIGR02171 Fb_sc_TIGR02171 Fibr 97.9 0.00075 1.6E-08 75.4 19.7 128 43-230 319-456 (912)
245 COG1770 PtrB Protease II [Amin 97.9 0.013 2.7E-07 63.4 27.8 121 32-217 130-256 (682)
246 COG3386 Gluconolactonase [Carb 97.9 0.0036 7.8E-08 63.3 23.0 49 157-217 143-193 (307)
247 TIGR01392 homoserO_Ac_trn homo 97.9 5.3E-05 1.1E-09 79.6 10.4 82 550-637 67-162 (351)
248 KOG1454 Predicted hydrolase/ac 97.9 0.00038 8.3E-09 71.5 16.3 44 650-694 281-324 (326)
249 KOG0283 WD40 repeat-containing 97.9 0.00098 2.1E-08 72.6 19.7 101 175-317 370-470 (712)
250 KOG1009 Chromatin assembly com 97.9 0.0007 1.5E-08 67.5 16.9 130 6-196 37-187 (434)
251 PLN03084 alpha/beta hydrolase 97.9 0.00013 2.9E-09 76.7 12.7 99 514-637 128-232 (383)
252 PF04762 IKI3: IKI3 family; I 97.9 0.01 2.2E-07 69.6 29.0 84 157-260 237-322 (928)
253 KOG1524 WD40 repeat-containing 97.9 0.00019 4.1E-09 73.8 12.8 165 33-317 107-275 (737)
254 KOG0319 WD40-repeat-containing 97.9 0.0014 3.1E-08 70.2 19.7 193 35-333 24-223 (775)
255 PRK07581 hypothetical protein; 97.9 5E-05 1.1E-09 79.5 9.3 82 550-636 66-158 (339)
256 KOG1516 Carboxylesterase and r 97.8 2.8E-05 6.1E-10 87.0 7.1 134 489-637 93-232 (545)
257 TIGR01838 PHA_synth_I poly(R)- 97.8 0.00024 5.1E-09 77.3 13.7 90 546-640 211-305 (532)
258 COG1506 DAP2 Dipeptidyl aminop 97.8 0.013 2.8E-07 66.3 27.8 179 27-262 56-235 (620)
259 PF07433 DUF1513: Protein of u 97.8 0.0034 7.3E-08 62.2 20.0 206 157-412 28-256 (305)
260 KOG1553 Predicted alpha/beta h 97.8 0.00018 3.9E-09 70.3 10.0 132 482-638 214-346 (517)
261 KOG0310 Conserved WD40 repeat- 97.7 0.0048 1E-07 63.2 20.3 196 30-334 26-227 (487)
262 KOG0278 Serine/threonine kinas 97.7 0.0005 1.1E-08 64.1 12.3 196 31-333 101-300 (334)
263 PF05728 UPF0227: Uncharacteri 97.7 0.0003 6.5E-09 65.6 11.1 35 601-638 58-92 (187)
264 KOG1524 WD40 repeat-containing 97.7 0.0077 1.7E-07 62.4 21.1 107 157-309 126-238 (737)
265 KOG0306 WD40-repeat-containing 97.7 0.0013 2.9E-08 70.6 16.3 200 32-330 456-664 (888)
266 TIGR02171 Fb_sc_TIGR02171 Fibr 97.7 0.0015 3.2E-08 73.1 17.1 86 6-107 330-420 (912)
267 PF07676 PD40: WD40-like Beta 97.7 8E-05 1.7E-09 49.7 4.6 38 22-66 2-39 (39)
268 KOG0771 Prolactin regulatory e 97.7 0.00064 1.4E-08 68.2 12.4 199 33-333 147-357 (398)
269 PF06342 DUF1057: Alpha/beta h 97.6 0.0018 3.9E-08 62.7 14.9 131 482-636 6-136 (297)
270 PF05577 Peptidase_S28: Serine 97.6 0.00032 6.9E-09 76.0 11.3 90 547-639 50-150 (434)
271 PRK00175 metX homoserine O-ace 97.6 0.00047 1E-08 73.2 12.3 78 553-636 89-181 (379)
272 KOG1445 Tumor-specific antigen 97.6 0.0021 4.5E-08 67.6 16.0 135 157-333 652-799 (1012)
273 PF10340 DUF2424: Protein of u 97.6 0.00023 4.9E-09 72.7 9.0 121 496-640 107-238 (374)
274 PF00561 Abhydrolase_1: alpha/ 97.6 0.00012 2.7E-09 71.5 6.9 76 556-636 1-78 (230)
275 KOG2919 Guanine nucleotide-bin 97.6 0.0066 1.4E-07 59.0 17.8 129 209-371 133-269 (406)
276 KOG0307 Vesicle coat complex C 97.6 0.00053 1.2E-08 77.1 12.0 235 5-334 39-286 (1049)
277 PRK05855 short chain dehydroge 97.6 0.00045 9.8E-09 78.3 11.9 102 489-622 9-114 (582)
278 KOG4667 Predicted esterase [Li 97.6 0.0013 2.8E-08 60.4 11.9 131 481-639 9-141 (269)
279 KOG0643 Translation initiation 97.5 0.012 2.6E-07 55.8 18.4 222 5-330 74-317 (327)
280 KOG2048 WD40 repeat protein [G 97.5 0.0045 9.8E-08 65.9 17.5 126 28-225 380-513 (691)
281 TIGR03502 lipase_Pla1_cef extr 97.5 0.00054 1.2E-08 77.1 11.4 93 513-623 449-576 (792)
282 KOG2106 Uncharacterized conser 97.5 0.11 2.3E-06 54.0 25.4 149 175-383 369-518 (626)
283 PF05677 DUF818: Chlamydia CHL 97.4 0.0029 6.3E-08 62.9 13.7 125 480-623 110-236 (365)
284 PF10647 Gmad1: Lipoprotein Lp 97.4 0.015 3.2E-07 57.6 18.5 166 89-334 26-199 (253)
285 KOG0640 mRNA cleavage stimulat 97.4 0.0051 1.1E-07 59.3 14.2 205 29-331 215-427 (430)
286 KOG0288 WD40 repeat protein Ti 97.4 0.003 6.5E-08 63.3 13.1 122 159-317 324-450 (459)
287 PF04762 IKI3: IKI3 family; I 97.4 0.071 1.5E-06 62.7 26.6 207 157-385 97-333 (928)
288 KOG0295 WD40 repeat-containing 97.4 0.0023 5.1E-08 63.0 11.8 226 6-330 131-364 (406)
289 KOG2112 Lysophospholipase [Lip 97.3 0.0025 5.4E-08 58.8 11.1 90 599-693 90-203 (206)
290 KOG2110 Uncharacterized conser 97.3 0.0039 8.4E-08 61.7 13.0 134 5-218 106-249 (391)
291 PRK02888 nitrous-oxide reducta 97.3 0.029 6.2E-07 61.1 20.6 212 33-333 127-352 (635)
292 KOG1539 WD repeat protein [Gen 97.3 0.24 5.1E-06 54.7 27.2 218 155-458 420-646 (910)
293 KOG2394 WD40 protein DMR-N9 [G 97.3 0.0063 1.4E-07 63.1 14.6 62 298-371 290-351 (636)
294 PF06977 SdiA-regulated: SdiA- 97.3 0.02 4.3E-07 56.0 17.5 58 32-102 23-80 (248)
295 KOG0288 WD40 repeat protein Ti 97.3 0.0031 6.8E-08 63.2 11.8 117 62-255 322-445 (459)
296 PF12146 Hydrolase_4: Putative 97.3 0.00079 1.7E-08 53.0 6.3 75 492-590 1-78 (79)
297 PRK07868 acyl-CoA synthetase; 97.3 0.003 6.6E-08 75.8 14.2 85 547-636 91-176 (994)
298 TIGR01839 PHA_synth_II poly(R) 97.3 0.0027 5.9E-08 68.5 12.2 90 545-640 237-331 (560)
299 KOG1332 Vesicle coat complex C 97.2 0.023 5.1E-07 53.2 16.3 239 6-333 34-289 (299)
300 KOG2382 Predicted alpha/beta h 97.2 0.0029 6.3E-08 62.7 11.2 44 650-694 270-313 (315)
301 KOG4389 Acetylcholinesterase/B 97.2 0.00042 9.2E-09 71.2 5.5 129 490-638 118-256 (601)
302 KOG0283 WD40 repeat-containing 97.2 0.016 3.5E-07 63.4 16.8 200 32-333 371-577 (712)
303 KOG0771 Prolactin regulatory e 97.2 0.0053 1.2E-07 61.8 12.1 149 30-255 186-338 (398)
304 KOG0289 mRNA splicing factor [ 97.1 0.027 5.9E-07 57.0 16.8 114 176-333 349-463 (506)
305 KOG0319 WD40-repeat-containing 97.1 0.013 2.9E-07 63.1 15.5 163 157-370 40-210 (775)
306 KOG0277 Peroxisomal targeting 97.1 0.098 2.1E-06 49.5 19.0 206 32-333 10-222 (311)
307 COG3391 Uncharacterized conser 97.1 0.094 2E-06 55.6 22.0 207 32-334 75-285 (381)
308 KOG0264 Nucleosome remodeling 97.1 0.053 1.1E-06 55.3 18.4 231 3-330 145-404 (422)
309 KOG0303 Actin-binding protein 97.0 0.075 1.6E-06 53.3 18.5 149 175-372 132-283 (472)
310 PRK02888 nitrous-oxide reducta 97.0 0.028 6E-07 61.2 16.7 145 36-218 198-352 (635)
311 KOG0316 Conserved WD40 repeat- 97.0 0.049 1.1E-06 50.9 15.8 126 175-345 18-144 (307)
312 KOG0277 Peroxisomal targeting 97.0 0.031 6.8E-07 52.7 14.5 222 6-330 39-265 (311)
313 KOG1063 RNA polymerase II elon 97.0 0.12 2.6E-06 55.7 20.6 49 276-329 552-601 (764)
314 COG3208 GrsT Predicted thioest 97.0 0.0065 1.4E-07 57.7 10.3 40 583-623 53-95 (244)
315 COG3571 Predicted hydrolase of 97.0 0.026 5.7E-07 49.4 13.0 140 547-693 35-210 (213)
316 KOG0307 Vesicle coat complex C 97.0 0.011 2.3E-07 67.0 13.6 152 175-371 117-272 (1049)
317 PF07676 PD40: WD40-like Beta 97.0 0.0014 3E-08 43.7 4.3 37 292-328 2-39 (39)
318 KOG2394 WD40 protein DMR-N9 [G 97.0 0.023 5E-07 59.1 14.7 37 157-193 312-351 (636)
319 KOG2110 Uncharacterized conser 96.9 0.1 2.2E-06 52.1 18.0 137 157-333 106-251 (391)
320 PTZ00472 serine carboxypeptida 96.9 0.011 2.4E-07 63.9 12.6 144 492-640 60-219 (462)
321 KOG0295 WD40 repeat-containing 96.8 0.022 4.8E-07 56.4 13.0 235 157-468 130-372 (406)
322 KOG0313 Microtubule binding pr 96.8 0.26 5.5E-06 49.5 20.2 239 31-373 106-366 (423)
323 KOG1538 Uncharacterized conser 96.8 0.032 6.9E-07 59.5 14.5 57 32-104 14-71 (1081)
324 KOG2048 WD40 repeat protein [G 96.8 1.1 2.3E-05 48.6 28.0 100 32-194 27-130 (691)
325 PF10230 DUF2305: Uncharacteri 96.8 0.012 2.6E-07 58.7 11.3 107 513-637 2-122 (266)
326 KOG1539 WD repeat protein [Gen 96.8 0.0076 1.6E-07 65.8 10.0 92 60-216 554-647 (910)
327 PLN02733 phosphatidylcholine-s 96.7 0.0058 1.3E-07 65.0 9.1 88 546-639 112-203 (440)
328 KOG0650 WD40 repeat nucleolar 96.7 0.047 1E-06 57.6 15.1 265 32-371 402-679 (733)
329 PF07819 PGAP1: PGAP1-like pro 96.7 0.027 5.9E-07 54.6 12.7 56 583-638 63-124 (225)
330 PRK06765 homoserine O-acetyltr 96.7 0.0033 7.1E-08 66.4 6.8 51 583-635 143-194 (389)
331 KOG0264 Nucleosome remodeling 96.7 0.25 5.5E-06 50.6 19.5 161 175-373 228-394 (422)
332 KOG1009 Chromatin assembly com 96.7 0.52 1.1E-05 47.8 21.2 37 175-224 124-160 (434)
333 COG4947 Uncharacterized protei 96.7 0.002 4.4E-08 56.6 4.0 49 590-640 91-139 (227)
334 KOG0278 Serine/threonine kinas 96.6 0.048 1E-06 51.3 13.0 130 5-218 165-298 (334)
335 KOG0289 mRNA splicing factor [ 96.6 0.3 6.6E-06 49.8 19.3 188 28-318 301-496 (506)
336 KOG1007 WD repeat protein TSSC 96.6 0.077 1.7E-06 51.1 14.3 113 32-217 125-245 (370)
337 COG2021 MET2 Homoserine acetyl 96.6 0.0069 1.5E-07 61.1 7.8 53 582-636 128-181 (368)
338 COG3391 Uncharacterized conser 96.6 0.34 7.5E-06 51.3 21.0 168 5-260 96-270 (381)
339 KOG2984 Predicted hydrolase [G 96.6 0.0055 1.2E-07 55.7 6.1 77 554-636 70-148 (277)
340 KOG1332 Vesicle coat complex C 96.6 0.48 1E-05 44.8 18.8 71 293-371 202-275 (299)
341 COG4757 Predicted alpha/beta h 96.5 0.0068 1.5E-07 56.5 6.6 113 485-624 8-126 (281)
342 KOG0290 Conserved WD40 repeat- 96.5 0.25 5.4E-06 47.8 16.9 221 3-317 71-306 (364)
343 PF06057 VirJ: Bacterial virul 96.5 0.012 2.6E-07 54.0 7.8 90 536-636 13-106 (192)
344 KOG1408 WD40 repeat protein [F 96.4 0.076 1.6E-06 57.3 14.6 57 396-464 619-675 (1080)
345 PF02273 Acyl_transf_2: Acyl t 96.4 0.086 1.9E-06 49.9 13.1 130 488-640 8-137 (294)
346 PF11144 DUF2920: Protein of u 96.4 0.021 4.5E-07 58.8 9.9 58 579-636 159-218 (403)
347 KOG2182 Hydrolytic enzymes of 96.4 0.026 5.7E-07 58.9 10.6 142 480-638 56-208 (514)
348 KOG2106 Uncharacterized conser 96.3 1.7 3.7E-05 45.5 25.9 57 33-101 203-261 (626)
349 KOG0641 WD40 repeat protein [G 96.3 0.95 2.1E-05 42.0 19.2 21 175-195 90-110 (350)
350 KOG1007 WD repeat protein TSSC 96.3 0.22 4.8E-06 48.1 15.2 195 32-317 65-277 (370)
351 KOG4378 Nuclear protein COP1 [ 96.3 0.15 3.3E-06 52.7 14.9 137 157-335 143-283 (673)
352 PF01674 Lipase_2: Lipase (cla 96.2 0.02 4.4E-07 54.7 8.4 71 546-623 20-96 (219)
353 KOG2183 Prolylcarboxypeptidase 96.2 0.029 6.4E-07 57.0 9.6 59 579-637 144-203 (492)
354 PF07082 DUF1350: Protein of u 96.2 0.049 1.1E-06 52.2 10.6 74 546-625 38-113 (250)
355 PRK04940 hypothetical protein; 96.2 0.08 1.7E-06 48.5 11.6 85 602-692 60-178 (180)
356 KOG0302 Ribosome Assembly prot 96.2 0.15 3.3E-06 51.0 14.0 126 169-332 251-380 (440)
357 KOG0269 WD40 repeat-containing 96.1 0.11 2.4E-06 56.7 13.9 202 6-308 111-319 (839)
358 KOG0268 Sof1-like rRNA process 96.1 0.014 3.1E-07 57.7 6.5 81 5-105 210-291 (433)
359 COG0596 MhpC Predicted hydrola 96.1 0.021 4.6E-07 56.3 8.3 36 602-637 88-123 (282)
360 KOG1538 Uncharacterized conser 96.1 0.048 1E-06 58.2 10.7 48 157-217 33-83 (1081)
361 KOG0641 WD40 repeat protein [G 96.0 1.3 2.8E-05 41.2 19.0 49 279-334 256-305 (350)
362 PRK13614 lipoprotein LpqB; Pro 96.0 0.7 1.5E-05 50.9 19.9 68 19-103 329-398 (573)
363 KOG0303 Actin-binding protein 96.0 0.44 9.6E-06 48.1 16.5 136 157-330 154-294 (472)
364 COG3490 Uncharacterized protei 96.0 1.7 3.7E-05 42.3 21.0 132 157-314 91-241 (366)
365 COG3490 Uncharacterized protei 96.0 1.7 3.7E-05 42.3 20.7 118 19-194 58-181 (366)
366 KOG0316 Conserved WD40 repeat- 96.0 0.51 1.1E-05 44.3 15.7 113 32-220 19-134 (307)
367 KOG2321 WD40 repeat protein [G 96.0 1.6 3.4E-05 46.5 20.9 39 300-344 230-268 (703)
368 KOG4283 Transcription-coupled 96.0 0.26 5.7E-06 47.7 14.1 152 4-222 123-281 (397)
369 KOG0647 mRNA export protein (c 96.0 1.1 2.3E-05 43.9 18.2 162 5-195 50-219 (347)
370 KOG0647 mRNA export protein (c 95.9 1.8 4E-05 42.3 25.7 123 22-219 20-147 (347)
371 KOG1523 Actin-related protein 95.9 0.97 2.1E-05 44.5 18.1 102 175-317 11-119 (361)
372 KOG0292 Vesicle coat complex C 95.9 4.1 8.8E-05 45.9 24.4 209 159-410 117-355 (1202)
373 KOG0294 WD40 repeat-containing 95.9 1 2.3E-05 44.2 17.9 140 157-343 149-293 (362)
374 PF00151 Lipase: Lipase; Inte 95.9 0.019 4.1E-07 59.0 6.8 55 582-636 130-186 (331)
375 KOG4328 WD40 protein [Function 95.8 0.97 2.1E-05 46.6 18.1 228 6-334 211-452 (498)
376 KOG0650 WD40 repeat nucleolar 95.8 0.97 2.1E-05 48.2 18.5 114 157-311 546-663 (733)
377 KOG0268 Sof1-like rRNA process 95.7 0.04 8.7E-07 54.6 8.0 155 7-255 169-329 (433)
378 KOG1523 Actin-related protein 95.7 0.36 7.9E-06 47.4 14.3 61 33-105 13-74 (361)
379 KOG0285 Pleiotropic regulator 95.7 2.5 5.5E-05 42.3 20.1 142 5-228 173-319 (460)
380 KOG4378 Nuclear protein COP1 [ 95.7 0.18 3.9E-06 52.2 12.7 137 6-219 144-282 (673)
381 KOG1920 IkappaB kinase complex 95.7 0.65 1.4E-05 53.7 18.2 60 32-106 70-129 (1265)
382 KOG0299 U3 snoRNP-associated p 95.7 0.71 1.5E-05 47.6 16.6 60 32-105 204-263 (479)
383 KOG0310 Conserved WD40 repeat- 95.6 0.45 9.8E-06 49.3 15.3 153 7-255 135-293 (487)
384 KOG1036 Mitotic spindle checkp 95.6 2.5 5.4E-05 41.5 24.1 120 20-218 4-125 (323)
385 COG3204 Uncharacterized protei 95.6 1.7 3.7E-05 42.6 18.3 58 32-102 87-144 (316)
386 COG3150 Predicted esterase [Ge 95.6 0.13 2.9E-06 45.6 9.9 27 603-631 60-86 (191)
387 PF12048 DUF3530: Protein of u 95.6 1.4 3.1E-05 44.9 19.2 111 579-694 173-309 (310)
388 PF06821 Ser_hydrolase: Serine 95.5 0.13 2.8E-06 47.5 10.2 49 589-638 42-92 (171)
389 PRK13613 lipoprotein LpqB; Pro 95.5 1.4 3.1E-05 49.1 20.1 68 19-102 349-423 (599)
390 KOG1920 IkappaB kinase complex 95.5 3.7 8E-05 47.9 23.0 82 158-259 223-306 (1265)
391 KOG1063 RNA polymerase II elon 95.4 0.091 2E-06 56.6 9.9 67 30-106 525-592 (764)
392 KOG0294 WD40 repeat-containing 95.4 2.7 5.8E-05 41.5 18.8 131 157-332 63-199 (362)
393 KOG4840 Predicted hydrolases o 95.4 0.066 1.4E-06 49.6 7.7 88 546-640 57-147 (299)
394 KOG0299 U3 snoRNP-associated p 95.4 1.5 3.3E-05 45.3 17.8 56 307-371 389-444 (479)
395 PF07519 Tannase: Tannase and 95.4 0.21 4.5E-06 54.3 12.7 127 494-639 16-152 (474)
396 PF00975 Thioesterase: Thioest 95.2 0.092 2E-06 51.2 9.0 82 546-635 18-102 (229)
397 PRK13615 lipoprotein LpqB; Pro 95.2 1.3 2.7E-05 48.8 18.0 143 33-261 336-487 (557)
398 PF15492 Nbas_N: Neuroblastoma 95.2 3 6.5E-05 40.7 18.4 39 175-226 44-82 (282)
399 TIGR03712 acc_sec_asp2 accesso 95.1 0.68 1.5E-05 48.8 14.9 114 492-638 275-391 (511)
400 KOG3967 Uncharacterized conser 95.1 0.15 3.2E-06 47.0 8.8 76 548-625 137-213 (297)
401 COG4782 Uncharacterized protei 95.1 0.2 4.3E-06 50.6 10.5 106 514-638 117-235 (377)
402 PF06977 SdiA-regulated: SdiA- 95.0 4 8.7E-05 40.0 21.1 123 169-331 15-148 (248)
403 KOG1034 Transcriptional repres 94.8 1.8 3.8E-05 42.9 15.8 51 158-221 159-215 (385)
404 KOG0276 Vesicle coat complex C 94.8 7.4 0.00016 42.1 24.2 119 158-316 120-245 (794)
405 KOG1034 Transcriptional repres 94.8 0.96 2.1E-05 44.7 13.8 66 29-104 134-199 (385)
406 PF15492 Nbas_N: Neuroblastoma 94.7 3.3 7.1E-05 40.4 17.2 32 175-219 230-261 (282)
407 PF10142 PhoPQ_related: PhoPQ- 94.6 3.2 7E-05 43.1 18.2 108 584-699 150-325 (367)
408 KOG0308 Conserved WD40 repeat- 94.5 1.4 3.1E-05 47.5 15.6 143 157-330 95-243 (735)
409 KOG4283 Transcription-coupled 94.3 4.1 9E-05 39.8 16.8 88 157-258 168-262 (397)
410 PF00450 Peptidase_S10: Serine 94.3 0.2 4.3E-06 54.0 9.4 150 486-640 17-184 (415)
411 KOG0302 Ribosome Assembly prot 94.3 0.56 1.2E-05 47.1 11.3 111 32-217 259-378 (440)
412 KOG2111 Uncharacterized conser 94.2 1.1 2.4E-05 44.1 12.9 92 61-218 158-257 (346)
413 KOG4328 WD40 protein [Function 94.2 8.2 0.00018 40.1 22.2 172 157-371 257-439 (498)
414 PF11339 DUF3141: Protein of u 94.1 0.84 1.8E-05 48.5 12.8 50 590-640 129-179 (581)
415 KOG1408 WD40 repeat protein [F 94.0 0.58 1.3E-05 50.8 11.5 116 176-331 598-714 (1080)
416 KOG0269 WD40 repeat-containing 94.0 1.1 2.3E-05 49.4 13.6 135 157-333 156-297 (839)
417 TIGR02604 Piru_Ver_Nterm putat 94.0 2.5 5.3E-05 44.6 16.6 131 157-314 47-199 (367)
418 KOG1520 Predicted alkaloid syn 93.9 0.86 1.9E-05 46.5 12.1 160 32-258 116-281 (376)
419 PF11187 DUF2974: Protein of u 93.9 0.097 2.1E-06 50.5 5.3 49 587-635 69-121 (224)
420 KOG0313 Microtubule binding pr 93.9 3 6.4E-05 42.2 15.4 118 157-315 281-405 (423)
421 KOG1214 Nidogen and related ba 93.8 4.9 0.00011 44.9 17.9 137 158-334 1048-1188(1289)
422 KOG2565 Predicted hydrolases o 93.6 0.28 6E-06 49.4 7.8 114 491-630 132-257 (469)
423 COG3204 Uncharacterized protei 93.6 7.3 0.00016 38.4 17.2 167 88-334 87-265 (316)
424 PRK13614 lipoprotein LpqB; Pro 93.5 4.4 9.6E-05 44.8 17.7 146 157-333 365-519 (573)
425 KOG2321 WD40 repeat protein [G 93.4 5.3 0.00012 42.7 17.1 86 277-371 156-247 (703)
426 KOG3253 Predicted alpha/beta h 93.4 1.4 3.1E-05 47.3 13.0 91 583-676 229-348 (784)
427 KOG2041 WD40 repeat protein [G 93.3 12 0.00025 41.3 19.7 62 32-105 73-134 (1189)
428 PF05990 DUF900: Alpha/beta hy 93.2 0.4 8.6E-06 46.8 8.3 54 583-638 76-138 (233)
429 COG3243 PhaC Poly(3-hydroxyalk 93.2 0.34 7.5E-06 50.0 7.9 88 546-638 130-218 (445)
430 KOG2551 Phospholipase/carboxyh 93.1 0.58 1.3E-05 43.9 8.7 100 586-697 92-223 (230)
431 KOG0646 WD40 repeat protein [G 93.1 3.4 7.4E-05 42.9 14.7 57 174-255 81-137 (476)
432 PF01764 Lipase_3: Lipase (cla 92.9 0.25 5.5E-06 43.8 6.2 53 581-635 45-104 (140)
433 PF07995 GSDH: Glucose / Sorbo 92.8 5.3 0.00011 41.4 16.5 82 244-330 116-212 (331)
434 KOG0646 WD40 repeat protein [G 92.7 6.5 0.00014 40.9 16.1 59 33-105 84-142 (476)
435 cd00741 Lipase Lipase. Lipase 92.7 0.39 8.4E-06 43.4 7.1 52 582-635 10-65 (153)
436 PF06028 DUF915: Alpha/beta hy 92.6 0.36 7.8E-06 47.5 7.1 60 579-640 82-146 (255)
437 KOG1963 WD40 repeat protein [G 92.5 0.85 1.8E-05 50.8 10.3 103 177-316 208-310 (792)
438 KOG0270 WD40 repeat-containing 92.4 15 0.00032 38.2 18.1 57 34-104 247-305 (463)
439 PF03088 Str_synth: Strictosid 92.1 1.5 3.3E-05 35.1 8.8 52 155-218 35-88 (89)
440 COG1073 Hydrolases of the alph 92.1 0.71 1.5E-05 46.7 9.1 44 650-695 253-298 (299)
441 PF11768 DUF3312: Protein of u 92.0 12 0.00025 40.5 17.7 143 157-333 184-330 (545)
442 KOG0308 Conserved WD40 repeat- 91.6 6.6 0.00014 42.7 15.2 49 157-218 193-244 (735)
443 TIGR02604 Piru_Ver_Nterm putat 91.6 2.6 5.7E-05 44.4 12.8 36 157-193 164-201 (367)
444 KOG0290 Conserved WD40 repeat- 91.5 2.8 6.1E-05 40.8 11.3 85 157-260 266-354 (364)
445 PF13360 PQQ_2: PQQ-like domai 91.5 14 0.00031 35.8 18.9 57 6-78 4-62 (238)
446 KOG4388 Hormone-sensitive lipa 91.4 0.24 5.2E-06 52.6 4.5 89 514-622 397-489 (880)
447 COG3319 Thioesterase domains o 91.4 0.49 1.1E-05 46.5 6.4 53 578-635 46-101 (257)
448 PLN02209 serine carboxypeptida 91.4 1.3 2.7E-05 47.6 10.1 153 483-640 42-215 (437)
449 PRK13615 lipoprotein LpqB; Pro 91.2 13 0.00028 41.1 17.7 142 158-334 356-504 (557)
450 PF02450 LCAT: Lecithin:choles 91.1 0.53 1.1E-05 49.9 6.9 86 546-638 69-161 (389)
451 PF03022 MRJP: Major royal jel 91.1 19 0.00041 36.4 17.7 65 4-80 33-106 (287)
452 TIGR03300 assembly_YfgL outer 90.9 24 0.00052 37.3 29.5 55 396-466 290-344 (377)
453 PF05057 DUF676: Putative seri 90.3 0.33 7.2E-06 46.8 4.2 21 601-621 77-97 (217)
454 KOG2111 Uncharacterized conser 90.3 13 0.00028 36.9 14.7 80 157-260 159-244 (346)
455 KOG2100 Dipeptidyl aminopeptid 90.2 35 0.00077 39.7 20.9 66 36-106 102-167 (755)
456 KOG1963 WD40 repeat protein [G 90.0 2.7 5.8E-05 47.0 11.1 101 33-194 208-312 (792)
457 PF13360 PQQ_2: PQQ-like domai 89.9 20 0.00042 34.8 20.2 12 396-407 223-234 (238)
458 PF04053 Coatomer_WDAD: Coatom 89.9 5.1 0.00011 43.1 13.0 77 210-317 127-213 (443)
459 COG4257 Vgb Streptogramin lyas 89.7 21 0.00047 34.9 19.3 81 9-105 85-165 (353)
460 KOG3621 WD40 repeat-containing 89.6 31 0.00068 38.2 18.3 55 37-104 40-94 (726)
461 KOG0285 Pleiotropic regulator 89.4 12 0.00027 37.6 13.9 179 32-315 153-336 (460)
462 PLN02454 triacylglycerol lipas 89.3 0.73 1.6E-05 48.2 5.9 41 582-622 208-248 (414)
463 PLN03016 sinapoylglucose-malat 89.1 2 4.3E-05 46.2 9.2 57 584-640 146-213 (433)
464 COG2319 FOG: WD40 repeat [Gene 88.7 33 0.00072 35.8 22.1 195 33-333 112-315 (466)
465 PF03959 FSH1: Serine hydrolas 88.6 1.1 2.3E-05 43.1 6.4 34 604-637 104-145 (212)
466 PF11288 DUF3089: Protein of u 88.5 1.2 2.6E-05 42.0 6.3 81 556-637 46-137 (207)
467 KOG0276 Vesicle coat complex C 88.5 38 0.00083 37.0 17.6 192 32-330 15-215 (794)
468 PF13449 Phytase-like: Esteras 88.4 28 0.00061 35.9 17.0 147 176-333 86-252 (326)
469 KOG4499 Ca2+-binding protein R 88.4 24 0.00052 33.7 16.3 180 248-473 115-301 (310)
470 PF05705 DUF829: Eukaryotic pr 88.1 8.7 0.00019 37.6 12.6 41 650-690 199-239 (240)
471 KOG4532 WD40-like repeat conta 87.9 20 0.00043 34.8 13.8 60 179-261 208-270 (344)
472 KOG1214 Nidogen and related ba 87.8 53 0.0012 37.2 18.5 150 156-347 998-1156(1289)
473 PF13449 Phytase-like: Esteras 87.2 39 0.00085 34.9 17.5 61 35-105 89-165 (326)
474 COG4814 Uncharacterized protei 86.7 5.3 0.00012 38.5 9.3 54 583-638 119-177 (288)
475 PLN02408 phospholipase A1 86.6 1.2 2.6E-05 45.9 5.5 38 585-622 183-220 (365)
476 KOG1282 Serine carboxypeptidas 86.6 9.5 0.00021 40.9 12.3 148 484-640 48-216 (454)
477 cd00519 Lipase_3 Lipase (class 86.1 1.7 3.6E-05 42.4 6.2 53 581-635 109-166 (229)
478 KOG0267 Microtubule severing p 85.8 2.2 4.7E-05 46.8 7.0 114 157-311 92-209 (825)
479 PLN02571 triacylglycerol lipas 85.7 1.4 3.1E-05 46.1 5.6 37 586-622 210-246 (413)
480 PF11768 DUF3312: Protein of u 85.6 13 0.00029 40.1 12.6 146 5-219 184-331 (545)
481 PRK10252 entF enterobactin syn 85.6 3.2 7E-05 52.1 9.8 75 553-635 1092-1169(1296)
482 KOG0267 Microtubule severing p 85.2 2.6 5.6E-05 46.2 7.2 79 6-104 93-172 (825)
483 KOG3724 Negative regulator of 85.2 1.6 3.5E-05 48.5 5.8 51 578-629 151-208 (973)
484 PF04083 Abhydro_lipase: Parti 85.0 3.8 8.2E-05 30.4 6.0 44 479-522 9-52 (63)
485 KOG2931 Differentiation-relate 84.8 26 0.00056 34.8 13.1 133 482-638 22-158 (326)
486 PF10605 3HBOH: 3HB-oligomer h 84.8 35 0.00075 37.5 15.2 40 602-641 285-325 (690)
487 PRK13613 lipoprotein LpqB; Pro 84.7 17 0.00036 40.8 13.6 67 29-106 407-474 (599)
488 COG1075 LipA Predicted acetylt 84.7 2.1 4.6E-05 44.3 6.4 37 601-637 126-164 (336)
489 PF05787 DUF839: Bacterial pro 84.6 13 0.00027 41.1 12.5 34 159-192 482-519 (524)
490 COG3946 VirJ Type IV secretory 84.5 2.9 6.4E-05 43.0 6.9 68 540-615 272-339 (456)
491 KOG0321 WD40 repeat-containing 84.3 66 0.0014 35.3 16.8 60 32-105 102-163 (720)
492 PLN02324 triacylglycerol lipas 84.2 1.9 4E-05 45.2 5.6 36 586-621 199-234 (415)
493 PF05096 Glu_cyclase_2: Glutam 84.1 45 0.00099 32.8 14.9 55 272-332 191-261 (264)
494 KOG1912 WD40 repeat protein [G 84.1 39 0.00085 38.0 15.3 60 23-98 8-67 (1062)
495 PF15390 DUF4613: Domain of un 83.6 30 0.00065 37.7 14.0 152 89-330 22-184 (671)
496 TIGR01849 PHB_depoly_PhaZ poly 83.5 5.8 0.00012 41.9 8.9 85 546-643 121-214 (406)
497 PF07250 Glyoxal_oxid_N: Glyox 83.4 36 0.00077 33.3 13.6 85 9-105 50-136 (243)
498 PLN02802 triacylglycerol lipas 82.9 1.9 4.1E-05 46.1 5.1 39 584-622 312-350 (509)
499 KOG2041 WD40 repeat protein [G 82.6 18 0.00039 39.9 12.1 58 32-104 117-174 (1189)
500 PF07995 GSDH: Glucose / Sorbo 82.6 35 0.00075 35.3 14.3 54 33-97 4-59 (331)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=380.00 Aligned_cols=532 Identities=19% Similarity=0.208 Sum_probs=348.3
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+..+..+|+|+.++|+.+.-+... ......+|+.+... .+.++.... ...+.|||||+.+++......
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~- 82 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFLK-PLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGG- 82 (620)
T ss_pred hcccCcccCCCCceeEEeeccccccc-cccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCC-
Confidence 35778999999999999987311111 24567899977554 444443332 678899999999999852111
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
...++|+++.+| .++.. ..+....|+|+|+.+
T Consensus 83 --------------------------------------------~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~ 115 (620)
T COG1506 83 --------------------------------------------RVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRI 115 (620)
T ss_pred --------------------------------------------CcceEEEEecCC---ceeeeecccccceeCCCCCeE
Confidence 126889888875 22222 456788999999999
Q ss_pred EEEeeccCccccccc-------------cc-ccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 190 LITSMHRPYSYKVPC-------------AR-FSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~-------------~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
++...........-. .. ....+++++.++ ....+.... .....+.+.++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~ 181 (620)
T COG1506 116 AFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGN-------------LDVVSFATDGDGRL 181 (620)
T ss_pred EEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCC-------------CceeeeeeCCCCce
Confidence 983322211000000 00 112333444333 111111111 11113344444443
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc----cceEEEEEcC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTWLVCP 331 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~----~~~~l~~~d~ 331 (706)
++.+.......... ...+.... .++.+..++.....+..+.|.+||+.+++...... ....++.++.
T Consensus 182 -~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~ 252 (620)
T COG1506 182 -VASIRLDDDADPWV-----TNLYVLIE---GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDG 252 (620)
T ss_pred -eEEeeeccccCCce-----EeeEEEec---CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEec
Confidence 33332222212211 11222222 35667777777777899999999998877654322 2334555552
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
..+. .... ....+ . ..+.......-++..+++..... .....++.++..++. ..+.
T Consensus 253 ~~~~--~d~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~ 308 (620)
T COG1506 253 ELGE--VDGD--LSSGD-D-TRGAWAVEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGL 308 (620)
T ss_pred cccc--ccee--eccCC-c-ccCcHHhccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeee
Confidence 2211 1110 00000 0 00111111223444555444220 112234444433332 2222
Q ss_pred cccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC-CCCCCCceEEEEEEcc
Q 005240 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRK 490 (706)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~~~~~ 490 (706)
..+. .....|+.+++.+++.++++..|+++|+++. ++..+++..+... ......++|.+++++.
T Consensus 309 ~~~~-------------~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 373 (620)
T COG1506 309 SGDD-------------GGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373 (620)
T ss_pred cCCC-------------ceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcC
Confidence 2221 1245677799999999999999999999986 6666666655443 4566789999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
||.+|++|+++|+++++.|+ ||+||++||||+.. +. + .....+|.|+++||+|+.+|+||+.|||
T Consensus 374 dG~~i~~~l~~P~~~~~~k~--yP~i~~~hGGP~~~------~~--~-----~~~~~~q~~~~~G~~V~~~n~RGS~GyG 438 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKK--YPLIVYIHGGPSAQ------VG--Y-----SFNPEIQVLASAGYAVLAPNYRGSTGYG 438 (620)
T ss_pred CCCEEEEEEecCCCCCCCCC--CCEEEEeCCCCccc------cc--c-----ccchhhHHHhcCCeEEEEeCCCCCCccH
Confidence 99999999999999988764 99999999999641 21 1 1235679999999999999999999999
Q ss_pred CCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC-----
Q 005240 571 DKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT----- 642 (706)
Q Consensus 571 ~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~----- 642 (706)
++|... .++...++|++++++++.+++.+|++||+|+|+|||||||++++++.| +|+|+++.+++.++..+
T Consensus 439 ~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~ 517 (620)
T COG1506 439 REFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGEST 517 (620)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccc
Confidence 998863 456678999999999999999999999999999999999999999996 99999999987664421
Q ss_pred -------------Cc----cc------------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 643 -------------PF----GF------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 643 -------------~~----~~------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
+. .| |+++|+++|+.+|+++++++||+++|++.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~ 597 (620)
T COG1506 518 EGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFS 597 (620)
T ss_pred hhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCC
Confidence 11 01 33499999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHhcc
Q 005240 676 ARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
.+.++...++++++||++|++.
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 598 RPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CchhHHHHHHHHHHHHHHHhcC
Confidence 9889999999999999999864
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=6.9e-36 Score=333.77 Aligned_cols=521 Identities=12% Similarity=0.043 Sum_probs=332.4
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcC-C---CceeecccCCC---ccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-T---GEAKPLFESPD---ICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~---g~~~~lt~~~~---~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..|.+++|..... ....-||..... + ++.+.|.+... ......+..+.|||||++|+|..+..+.+
T Consensus 79 ~~g~~~y~~~~~~------g~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E- 151 (686)
T PRK10115 79 IKNGYRYRHIYEP------GCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR- 151 (686)
T ss_pred EECCEEEEEEEcC------CCccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE-
Confidence 4577877776421 223556655532 2 22233332111 00112245788999999999986543332
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC--ceecCCCceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~--~~~lt~~~~~~~~~~SpDG~~i 189 (706)
..+|+++++ +|+ +..+.... ..++|++||+.|
T Consensus 152 -------------------------------------------~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~ 186 (686)
T PRK10115 152 -------------------------------------------QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTF 186 (686)
T ss_pred -------------------------------------------EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEE
Confidence 268999999 565 33343222 458999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEeccCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRG 266 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~ 266 (706)
+|+...... ....+++++++.+. +.+.|...... + ..-..|.+ |++. +. +....+.
T Consensus 187 ~y~~~~~~~-------~~~~~v~~h~lgt~~~~d~lv~~e~~~---~---------~~~~~~~s~d~~~-l~-i~~~~~~ 245 (686)
T PRK10115 187 YYVRKHPVT-------LLPYQVWRHTIGTPASQDELVYEEKDD---T---------FYVSLHKTTSKHY-VV-IHLASAT 245 (686)
T ss_pred EEEEecCCC-------CCCCEEEEEECCCChhHCeEEEeeCCC---C---------EEEEEEEcCCCCE-EE-EEEECCc
Confidence 999875311 11468999999977 44555443211 1 01113444 7776 44 3222221
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
+ ..+++++++ +..++++.+... ......+. ..+..+++.++......+|..+++.+. .+.+.+....
T Consensus 246 ~--------~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~ 313 (686)
T PRK10115 246 T--------SEVLLLDAE-LADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPR 313 (686)
T ss_pred c--------ccEEEEECc-CCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCC
Confidence 1 235555541 133444444322 22222222 224566666655556778999998742 3344443321
Q ss_pred cc-ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 346 FE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 346 ~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
-. .+. .+.++ +++|++.... .....|+.++..+++..+|...... .+
T Consensus 314 ~~~~i~------~~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~----~~-- 361 (686)
T PRK10115 314 ENIMLE------GFTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA----YV-- 361 (686)
T ss_pred CCCEEE------EEEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc----eE--
Confidence 10 110 12333 4566665532 2233577777765555555411110 00
Q ss_pred hccCCCceecc--cCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEec
Q 005240 425 LVFGQGEEDIN--LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502 (706)
Q Consensus 425 ~~~~~~~~~~s--~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P 502 (706)
....++ +++..++++.++..+|+++|.+|+.+++.+.|+..+.+........+|.+++++.||.+|+++|++|
T Consensus 362 -----~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~ 436 (686)
T PRK10115 362 -----TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYH 436 (686)
T ss_pred -----eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEE
Confidence 011233 6678899999999999999999999998888887654322223569999999999999999977776
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh---hH
Q 005240 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FV 579 (706)
Q Consensus 503 ~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~---~~ 579 (706)
++... .++.|+||++||||..+ ....+....+.|+++||+|+.+|.||+.|||+.|.... +.
T Consensus 437 ~~~~~--~~~~P~ll~~hGg~~~~-------------~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k 501 (686)
T PRK10115 437 RKHFR--KGHNPLLVYGYGSYGAS-------------IDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKK 501 (686)
T ss_pred CCCCC--CCCCCEEEEEECCCCCC-------------CCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcC
Confidence 54322 23479999999997532 11112244678999999999999999999999887532 22
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------CCcc--------
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------TPFG-------- 645 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------~~~~-------- 645 (706)
...++|++++++||++++++|++||+|+|+|+||+|+++++.++|++|+|+|+.+|+.|+.. .|..
T Consensus 502 ~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G 581 (686)
T PRK10115 502 KNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWG 581 (686)
T ss_pred CCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhC
Confidence 25799999999999999999999999999999999999999999999999999999988431 1100
Q ss_pred -----------------------------------------chHHHHHHHHHhCCCcEEEEEe---CCCCccCCCc-ccH
Q 005240 646 -----------------------------------------FQAERFFDALKGHGALSRLVLL---PFEHHVYAAR-ENV 680 (706)
Q Consensus 646 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~~~-~~~ 680 (706)
.++.+|+.+|++++++.++++| +++||+.... ...
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 1233999999999999999999 9999985322 223
Q ss_pred HHHHHHHHHHHHHHhcc
Q 005240 681 MHVIWETDRWLQKYCLS 697 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l~~ 697 (706)
.+.....+.|+-..+..
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 44455568888887654
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=288.41 Aligned_cols=293 Identities=18% Similarity=0.237 Sum_probs=229.2
Q ss_pred CcceEEEEecCCCCCCCCCCceeeeecC-CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEE
Q 005240 376 DEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQY 454 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v 454 (706)
.....+|+.+.-.+| -..+|+.+... .|++.+++...-. +...++.+=+.++.-+++...|+.+
T Consensus 513 E~~~LVYf~gt~d~P--lE~hLyvvsye~~g~~~rlt~~g~s-------------h~~~l~~~~d~fv~~~~sv~sP~cv 577 (867)
T KOG2281|consen 513 EVRKLVYFVGTKDTP--LEHHLYVVSYENPGEIARLTEPGYS-------------HSCELDQQCDHFVSYYSSVGSPPCV 577 (867)
T ss_pred ccceEEEEEccCCCC--ceeeEEEEEEecCCceeeccCCCcc-------------cchhhhhhhhhHhhhhhcCCCCceE
Confidence 456778887654443 34568888877 7888888765421 1223444444577788899999999
Q ss_pred EEEECCCCceeEeecC----C----CCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCC
Q 005240 455 HILSWPLKKSSQITNF----P----HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKS 526 (706)
Q Consensus 455 ~~~~~~~~~~~~lt~~----~----~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~ 526 (706)
.++.+.+++...+-.. + ...+..+...+|.+.+++..|..+.|.+|+|.+|+++++ ||+++++||||..
T Consensus 578 ~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk--Yptvl~VYGGP~V- 654 (867)
T KOG2281|consen 578 SLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK--YPTVLNVYGGPGV- 654 (867)
T ss_pred EEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC--CceEEEEcCCCce-
Confidence 9998877543333211 0 001223345668899999889999999999999999884 9999999999953
Q ss_pred cCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHc-CCCCCC
Q 005240 527 KDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRR-GVADPS 602 (706)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~-~~id~~ 602 (706)
|.|.+ +|....+...+.|+++||+|+..+.||+.-+|.+|.. ..++.-.++|+..++++|+++ ++||.+
T Consensus 655 ----QlVnn---sfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmd 727 (867)
T KOG2281|consen 655 ----QLVNN---SFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMD 727 (867)
T ss_pred ----EEeec---cccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccch
Confidence 55554 4555566778899999999999999999888887764 344556699999999999998 699999
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCCCcc---------------ch--------------------
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG---------------FQ-------------------- 647 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~~~~---------------~~-------------------- 647 (706)
||+|.||||||||+++.++++|+.|+|+|+.+|+.+|.+.... |.
T Consensus 728 rV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlL 807 (867)
T KOG2281|consen 728 RVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLL 807 (867)
T ss_pred heeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEE
Confidence 9999999999999999999999999999999999887642111 10
Q ss_pred -------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 648 -------------AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 648 -------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
-..+..+|.++|++.++++||++.|++.+++...+.-.+++.|+++
T Consensus 808 vHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 808 VHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 0199999999999999999999999999999999999999999986
No 4
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-26 Score=259.58 Aligned_cols=346 Identities=21% Similarity=0.224 Sum_probs=231.3
Q ss_pred ceecCCCceE-EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEE
Q 005240 304 VSWCDDSLAL-VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (706)
Q Consensus 304 ~~wspDg~~l-~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 382 (706)
+.++.|+... ++.....++..++..+....+. +++.++.+...-. ..+.++.+..+++|.....
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~-~~~~lt~g~w~v~------~i~~~~~~~~~i~f~~~~~-------- 409 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGS-EPRMLTSGNWEVT------SILGYDKDSNRIYFDAYEE-------- 409 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCC-ccccccccceEEE------EeccccCCCceEEEEecCC--------
Confidence 4455565333 3322222225566666655532 3444433222110 0122346777777765321
Q ss_pred EecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcE-EEEEECCC
Q 005240 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPL 461 (706)
Q Consensus 383 ~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~-v~~~~~~~ 461 (706)
+...++|+.+++.++..+.++-.... +.. ...++++++..+.++.....++.|.. +-+.....
T Consensus 410 --------~~~~~~ly~i~~~~~~~~~lt~~~~~---~~~-----~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 410 --------DPSERHLYSISLGSGTVESLTCSLIT---GPC-----TYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred --------CCCceEEEEEEccccccccccccCCC---Ccc-----eEEEEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 23456788899887766665433211 000 11246777778888888777766643 22222111
Q ss_pred Cc-eeEeecCCCCCCC----CCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCC
Q 005240 462 KK-SSQITNFPHPYPT----LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS 536 (706)
Q Consensus 462 ~~-~~~lt~~~~~~~~----~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~ 536 (706)
.+ ...|. .|....+ ......+..++.- ||......+++|++|++++ ++|+||.+||||.+ +.+...
T Consensus 474 ~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~~ 544 (755)
T KOG2100|consen 474 SKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTSK 544 (755)
T ss_pred ceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeeee
Confidence 12 22222 2333321 2223344444443 8999999999999999887 59999999999852 233322
Q ss_pred CCCcCCCCchHHHH-HHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechH
Q 005240 537 PNEFSGMTPTSSLI-FLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYG 612 (706)
Q Consensus 537 ~~~~~~~~~~~~~~-l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~G 612 (706)
+ ...+... +..+|++|+..++||+.|+|..+.. ...+...++|++.+++++++.+++|++||+|||+|||
T Consensus 545 ~------~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyG 618 (755)
T KOG2100|consen 545 F------SVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYG 618 (755)
T ss_pred E------EecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChH
Confidence 1 1233433 4569999999999999999998764 3455568999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CceeEEEeccCCCCCCCC-----------Cc----cc------------------------------
Q 005240 613 AFMTAHLLAHAP-HLFCCGIARSGSYNKTLT-----------PF----GF------------------------------ 646 (706)
Q Consensus 613 G~~a~~~~~~~p-~~~~a~v~~~~~~d~~~~-----------~~----~~------------------------------ 646 (706)
|||+++++..+| +.|+|+++++|++|+.+. |. .|
T Consensus 619 Gy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~ 698 (755)
T KOG2100|consen 619 GYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHF 698 (755)
T ss_pred HHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcCH
Confidence 999999999997 789999999999987631 10 01
Q ss_pred -hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 647 -QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 647 -~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
++.+++++|+.+|+++++++||+++|+++......+++..+..||...+
T Consensus 699 q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 699 QQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 1229999999999999999999999999988778899999999999433
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-21 Score=204.18 Aligned_cols=468 Identities=15% Similarity=0.109 Sum_probs=283.4
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEE-cCCCc-eeecccCCCcccc---ccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIAD-AETGE-AKPLFESPDICLN---AVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d-~~~g~-~~~lt~~~~~~~~---~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.+|.+-+|.+..+ ....-+|..- .+++. .+.|.+....... ..+..+.-|||+++|++..+..+.+
T Consensus 83 ~~~~~~Yy~r~~~------g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e--- 153 (682)
T COG1770 83 RKGPYEYYSRTEE------GKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDE--- 153 (682)
T ss_pred ccCCeeEEEEecC------CCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEeccccc---
Confidence 5788888877531 2233445442 34444 3444332211111 1134667899999999986543322
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCCceEeeeeeCCCCcEEEEEe
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~~~~~~~~~SpDG~~i~~~~ 193 (706)
+-.|...++ +|+...-.-.+....++|.+|++.++|+.
T Consensus 154 -----------------------------------------~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 154 -----------------------------------------QYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred -----------------------------------------EEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence 145666777 66322221113456899999999999998
Q ss_pred eccCcccccccccccceEEEEecCC--CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 194 MHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
...... +..++...+.+ ..-+.+..... +.++. .+.-|.+.+. |+ +...+
T Consensus 193 ~d~~~r--------p~kv~~h~~gt~~~~d~lvyeE~d----~~f~~-------~v~~s~s~~y-i~-i~~~~------- 244 (682)
T COG1770 193 LDENHR--------PDKVWRHRLGTPGSSDELVYEEKD----DRFFL-------SVGRSRSEAY-IV-ISLGS------- 244 (682)
T ss_pred EcCCCC--------cceEEEEecCCCCCcceEEEEcCC----CcEEE-------EeeeccCCce-EE-EEcCC-------
Confidence 875432 46788877775 43333433221 11111 1222333333 33 21111
Q ss_pred cCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccc
Q 005240 272 VSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY 350 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~ 350 (706)
....++++++++ ..+.+++.+..- .+....+.- -|..+++.++.++.+-+|+...+.......+.+. .
T Consensus 245 -~~tsE~~ll~a~-~p~~~p~vv~pr~~g~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I-------~ 313 (682)
T COG1770 245 -HITSEVRLLDAD-DPEAEPKVVLPRENGVEYSVEH--GGDRFYILSNADGKNFKLVRAPVSADKSNWRELI-------P 313 (682)
T ss_pred -CcceeEEEEecC-CCCCceEEEEEcCCCcEEeeee--cCcEEEEEecCCCcceEEEEccCCCChhcCeeee-------c
Confidence 123357788773 133445554432 233222221 2566777666665566788777621111112221 1
Q ss_pred cCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCC
Q 005240 351 SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQG 430 (706)
Q Consensus 351 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (706)
..++...-.++--.++|+.... ++..+.++..+.++|+...|.-.+.. ....+
T Consensus 314 h~~~~~l~~~~~f~~~lVl~eR------------------~~glp~v~v~~~~~~~~~~i~f~~~a----y~~~l----- 366 (682)
T COG1770 314 HREDVRLEGVDLFADHLVLLER------------------QEGLPRVVVRDRKTGEERGIAFDDEA----YSAGL----- 366 (682)
T ss_pred cCCCceeeeeeeeccEEEEEec------------------ccCCceEEEEecCCCceeeEEecchh----hhccc-----
Confidence 1112222223334445544432 13456788888888876554322221 01111
Q ss_pred ceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC-CCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCC
Q 005240 431 EEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSK 509 (706)
Q Consensus 431 ~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~ 509 (706)
..+--.|..+|.+.+++.+.|.+++-+|+.+++.+.|...+.+- -.......+.+..++.||+.||..|+.-+++. .
T Consensus 367 ~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~--~ 444 (682)
T COG1770 367 SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK--L 444 (682)
T ss_pred cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--C
Confidence 11223456789999999999999999999999999998754332 12345688999999899999999999988743 3
Q ss_pred CCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh-hHH--HHHHHH
Q 005240 510 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVE--QLVSSA 586 (706)
Q Consensus 510 ~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~--~~~~D~ 586 (706)
.++.|+||+.||..-. .-+..|+ .....|+.+||+-...+.||+.-.|+.|.... ..+ .-+.|+
T Consensus 445 ~g~~p~lLygYGaYG~---------s~~p~Fs----~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 445 DGSAPLLLYGYGAYGI---------SMDPSFS----IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred CCCCcEEEEEeccccc---------cCCcCcc----cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHH
Confidence 4568999999997421 1122232 22345788999877666676655666655321 111 348999
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+++.++|+++++.++++|+++|+|+||+|+..++...|++|+++|+..|..|
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVD 563 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563 (682)
T ss_pred HHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccc
Confidence 9999999999999999999999999999999999999999999999999876
No 6
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.2e-23 Score=224.10 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=184.7
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE--EEEEecCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSRRDP 112 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~--l~~~~~~~~~~~ 112 (706)
.+.++ +++|||+....+...+ ....+||++|.+|+..++||..... ..+|.|||||+. ++|.+...
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~-~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~~---- 208 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTE-LKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYKL---- 208 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccc-cccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEccC----
Confidence 35556 9999999874322211 2357999999999999999976543 468999999986 44565321
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (706)
+..+||+++++| +.++|+.. +....++|||||++|+
T Consensus 209 ------------------------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~La 246 (428)
T PRK01029 209 ------------------------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLA 246 (428)
T ss_pred ------------------------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEE
Confidence 126899999954 88888876 5566899999999999
Q ss_pred EEeeccCcccccccccccceEEE--EecCC---CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~---~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|++...+. .++++ +++.+ ++.++++...... ...+.|||||+. |+|++..++
T Consensus 247 f~s~~~g~----------~di~~~~~~~~~g~~g~~~~lt~~~~~~------------~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 247 FISDRYGN----------PDLFIQSFSLETGAIGKPRRLLNEAFGT------------QGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred EEECCCCC----------cceeEEEeecccCCCCcceEeecCCCCC------------cCCeEECCCCCE-EEEEECCCC
Confidence 99865331 35555 45553 4566776543110 125689999998 888864432
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
. ..||+++++ ..++..++|+........+.|||||+.|+|..... +..+||++|++++ +.+.++...
T Consensus 304 -~--------~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g--~~~~Lt~~~ 370 (428)
T PRK01029 304 -R--------PRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATG--RDYQLTTSP 370 (428)
T ss_pred -C--------ceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCC--CeEEccCCC
Confidence 1 248888772 12355677876666778899999999999986443 4568999999984 466665432
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.. ...+.|+|||++|++.... .....|+.+++++++.++|+...
T Consensus 371 ~~-------~~~p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 371 EN-------KESPSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred CC-------ccceEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCC
Confidence 11 1237899999999987632 12236889999999888887543
No 7
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=7.8e-24 Score=225.60 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=174.0
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe--EEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
...|++.|.+. +..++||. .......|+|||||++ ++|++.+ ++..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~dG----~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYDG----QNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCCC----CCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 45788888866 89999984 2334789999999998 5567653 56789999999999999998766
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
+. ...+.|||||++|+|.+...+ ..++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~g----------------------------------------------~~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRYG----------------------------------------------NPDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCCC----------------------------------------------CcceeE
Confidence 53 457899999999999864211 124444
Q ss_pred E--cc-C---CCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 162 G--SL-D---GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 162 ~--~l-~---g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
. ++ . |++++++.. .....++|||||++|+|++.... ..+||+++++ ++..++|+.....
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~~- 328 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYRN- 328 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCCC-
Confidence 3 44 2 366778765 34467899999999999886532 2479998886 3456677654322
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
...+.|||||+. |+|+....+ ...|+++|+ ++++.++|+........+.|+|||+
T Consensus 329 ------------~~~p~wSPDG~~-Laf~~~~~g---------~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 329 ------------SSCPAWSPDGKK-IAFCSVIKG---------VRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ------------ccceeECCCCCE-EEEEEcCCC---------CcEEEEEEC---CCCCeEEccCCCCCccceEECCCCC
Confidence 225589999998 888754322 125899998 7888899987666678899999999
Q ss_pred eEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
.|+|..... +...||.+|++++ +.+.|+.
T Consensus 384 ~L~f~~~~~-g~~~L~~vdl~~g--~~~~Lt~ 412 (428)
T PRK01029 384 HLVYSAGNS-NESELYLISLITK--KTRKIVI 412 (428)
T ss_pred EEEEEECCC-CCceEEEEECCCC--CEEEeec
Confidence 999876443 4578999999984 4566654
No 8
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3.5e-23 Score=221.64 Aligned_cols=235 Identities=15% Similarity=0.130 Sum_probs=177.6
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
+...|++.|.+. +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..++
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 356788888866 78888874 23358899999999999998742 456799999999999999986654
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ...+.|||||+.|+|..... +..+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~~----------------------------------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcCC----------------------------------------------CCcEEEEE
Confidence 3 56789999999999975311 12579999
Q ss_pred ccC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 163 SLD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 163 ~l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+++ |+.++++.. .....+.|||||++|+|++.+.. ..+||++++++++.++++.....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~~---------- 332 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ---------- 332 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCCC----------
Confidence 994 588888877 56678999999999999987542 24899999998888888654221
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
...+.|||||+. |+++....+ ...|+++|+ ++++.+.|+.. .....|.|||||+.|++.+...
T Consensus 333 ---~~~~~~SpDG~~-Ia~~~~~~g---------~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 333 ---NQDADVSSDGKF-MVMVSSNGG---------QQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ---ccCEEECCCCCE-EEEEEccCC---------CceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 125689999998 877653221 124888998 77888888743 3456899999999999987544
Q ss_pred ccceEEEEEcCCCCCCCceee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l 341 (706)
+...|+++++++. ..+.|
T Consensus 396 -~~~~l~~~~~~G~--~~~~l 413 (429)
T PRK03629 396 -MGSVLNLVSTDGR--FKARL 413 (429)
T ss_pred -CceEEEEEECCCC--CeEEC
Confidence 4567999999873 34445
No 9
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=9.9e-23 Score=219.68 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=185.2
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
..+|||++.... ......+||++|.+++..+++|.+... +..+.|||||++|+|.+...
T Consensus 165 ~~~iafv~~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~~------------- 223 (435)
T PRK05137 165 DTRIVYVAESGP---KNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYAN------------- 223 (435)
T ss_pred CCeEEEEEeeCC---CCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEecC-------------
Confidence 568999986311 001257999999999999999866543 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
+..+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 224 ---------------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 224 ---------------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 1268999999 5577888765 56678999999999999876532
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++|+...... ..+.|||||+. |+|.++..+ ...||
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~~-------------~~~~~spDG~~-i~f~s~~~g---------~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAID-------------TSPSYSPDGSQ-IVFESDRSG---------SPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCcc-------------CceeEcCCCCE-EEEEECCCC---------CCeEE
Confidence 358999999999999998765432 24589999998 888764322 12589
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
++|+ ++++.++|+........+.|||||+.|++..... +..+|+++|++++ ..+.++... ..-.++
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~--~~~~lt~~~--------~~~~p~ 383 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGS--GERILTSGF--------LVEGPT 383 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCC--ceEeccCCC--------CCCCCe
Confidence 9998 7888888887666677899999999999976433 4568999999774 345554321 112378
Q ss_pred eccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
|||||+.|++..... +. .....|+.+|+++++.+++.
T Consensus 384 ~spDG~~i~~~~~~~------------~~---~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTP------------GS---GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccC------------CC---CCcceEEEEECCCCceEEcc
Confidence 999999999876321 00 01146889999877766554
No 10
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=5.3e-23 Score=217.43 Aligned_cols=231 Identities=10% Similarity=0.045 Sum_probs=172.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe-EEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|++.|.+. ...++++. .+ ....|+|||||++ ++|++.. .+..+||++|+.+|+.++|+..++.
T Consensus 169 ~~l~~~d~dg----~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g~ 234 (419)
T PRK04043 169 SNIVLADYTL----TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQGM 234 (419)
T ss_pred ceEEEECCCC----CceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCCc
Confidence 4566766644 66777762 23 5678999999997 6666642 2457999999999999999865442
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 235 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 263 (419)
T PRK04043 235 -----LVVSDVSKDGSKLLLTMAPK----------------------------------------------GQPDIYLYD 263 (419)
T ss_pred -----EEeeEECCCCCEEEEEEccC----------------------------------------------CCcEEEEEE
Confidence 44678999999999875321 226899999
Q ss_pred cCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+++ +.++||.. .....+.|||||++|+|++.+.. ..+||++++++++.++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~------------ 321 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK------------ 321 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC------------
Confidence 954 88999877 44567889999999999997643 3589999999998888875421
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
....|||||+. |+|+........ ......|+++|+ ++++.++|+.. .....|.|||||+.|+|.+.. .
T Consensus 322 ---~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~-~ 389 (419)
T PRK04043 322 ---NNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL-G 389 (419)
T ss_pred ---cCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc-C
Confidence 13489999999 887764322110 011246999998 78888999865 345579999999999998754 4
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
+...|+.+++++.
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 6678999999984
No 11
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=5.8e-23 Score=221.48 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=175.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.|.+. +..++++. ....+..|+|||||++|||++.. ++..+||++|+++|+.++++..++.
T Consensus 181 ~~~l~~~d~dg----~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDG----ANVRYLTD--GSSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCCC----CCcEEEec--CCCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 45788888755 88888874 23358899999999999998752 4558999999999999999865543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQG----------------------------------------------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEecC----------------------------------------------CCceEEEEE
Confidence 56789999999999875321 126899999
Q ss_pred cC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
++ ++.++|+.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~~----------- 335 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGGR----------- 335 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCCc-----------
Confidence 95 488889877 45667999999999999886543 25899999999888888765322
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
...+.|||||+. |++..... + ...|+++++ +++..+.++. ......+.|||||+.|+|.....+
T Consensus 336 --~~~~~~SpdG~~-ia~~~~~~-~--------~~~i~~~d~---~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 336 --YSTPVWSPRGDL-IAFTKQGG-G--------QFSIGVMKP---DGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred --ccCeEECCCCCE-EEEEEcCC-C--------ceEEEEEEC---CCCceEeccC-CCCCCCCeECCCCCEEEEEEccCC
Confidence 124589999998 87765221 1 125888888 6666666654 345788999999999999865433
Q ss_pred c--ceEEEEEcCCCCCCCceee
Q 005240 322 S--QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 322 ~--~~~l~~~d~~~~~~~~~~l 341 (706)
. ...||+++++++ ..+.+
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l 419 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREV 419 (435)
T ss_pred CCCcceEEEEECCCC--ceEEc
Confidence 2 157999999884 34444
No 12
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.6e-22 Score=216.61 Aligned_cols=249 Identities=18% Similarity=0.191 Sum_probs=181.7
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
++|||+....+ .....+||++|.+++..+++|.+... +..+.|||||+.|+|.+...
T Consensus 164 ~riayv~~~~~----~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~-------------- 220 (429)
T PRK03629 164 TRIAYVVQTNG----GQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES-------------- 220 (429)
T ss_pred CeEEEEEeeCC----CCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC--------------
Confidence 78999986321 13467999999999999999876543 67899999999999985321
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
...+||++++ +|+.+.++.. +....++|||||++|+|+.....
T Consensus 221 --------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 221 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 1268999999 4588888765 55668999999999999865432
Q ss_pred ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
..+|+++++++++.++++..... ...+.|||||+. |+|..+..+ ...||.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~~-------------~~~~~wSPDG~~-I~f~s~~~g---------~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAYTSDQAG---------RPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCCC-------------cCceEECCCCCE-EEEEeCCCC---------CceEEE
Confidence 24799999999888888766432 225689999998 888764322 125899
Q ss_pred ecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
+|+ ++++.++++........+.|||||+.|++..... +..+||++|++++ +.+.|++.. ....++|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g--~~~~Lt~~~--------~~~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLTDTF--------LDETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCC--CeEEeCCCC--------CCCCceE
Confidence 998 7788888876555667899999999999876443 4567999999884 456665321 1123679
Q ss_pred ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
||||++|++.... +....|+.++++.+..++|.
T Consensus 382 SpDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 382 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECc
Confidence 9999999998642 12234677787655555554
No 13
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.1e-22 Score=215.17 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=169.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. ...++++.. ...+..|+|||||++|||++.. ++..+||++|+++++.++++..+..
T Consensus 198 ~~l~i~d~dG----~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~- 263 (448)
T PRK04792 198 YQLMIADYDG----YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI- 263 (448)
T ss_pred eEEEEEeCCC----CCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC-
Confidence 3566666644 667777633 3357899999999999998752 4567999999999999889765542
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||++++
T Consensus 264 ----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~dl 293 (448)
T PRK04792 264 ----NGAPRFSPDGKKLALVLSKD----------------------------------------------GQPEIYVVDI 293 (448)
T ss_pred ----cCCeeECCCCCEEEEEEeCC----------------------------------------------CCeEEEEEEC
Confidence 35789999999999875321 1268999999
Q ss_pred C-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+ ++.++++.. .....++|||||++|+|++.... ..+||++++++++.++|+.....
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~~------------ 351 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGEQ------------ 351 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCCC------------
Confidence 5 588888876 45678999999999999886543 35899999998888888643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.....|||||+. |+|.....+ ...|+++|+ ++++++.|+... ....|.|+|||+.|+|..... +
T Consensus 352 -~~~~~~SpDG~~-l~~~~~~~g---------~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~-g 415 (448)
T PRK04792 352 -NLGGSITPDGRS-MIMVNRTNG---------KFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ-G 415 (448)
T ss_pred -CcCeeECCCCCE-EEEEEecCC---------ceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecC-C
Confidence 113489999998 887653221 124888988 778887777542 345789999999999987544 5
Q ss_pred ceEEEEEcCCCC
Q 005240 323 QTRTWLVCPGSK 334 (706)
Q Consensus 323 ~~~l~~~d~~~~ 334 (706)
...||.+++++.
T Consensus 416 ~~~l~~~~~~G~ 427 (448)
T PRK04792 416 KQVLAAVSIDGR 427 (448)
T ss_pred ceEEEEEECCCC
Confidence 667999998763
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=7.1e-22 Score=208.91 Aligned_cols=247 Identities=14% Similarity=0.123 Sum_probs=178.7
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE-EEEEecCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~-l~~~~~~~~~~~~~~~~~~~~ 121 (706)
.++||.+.. .+....+||++|.++...++++... . ...+.|||||+. ++|.+...
T Consensus 155 ~r~~~v~~~-----~~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKY-----TGPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEc-----cCCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccC-------------
Confidence 466776541 1123689999999999888888653 2 457899999986 66665321
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++|+ +|+.++|+.. +....+.|||||++|+|+.....
T Consensus 211 ---------------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 211 ---------------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 1258999999 5688888866 55667889999999999886543
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++|+.....+. ...|||||+. |+|+++..+ ...||
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~d~-------------~p~~SPDG~~-I~F~Sdr~g---------~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGIDV-------------NGNFVEDDKR-IVFVSDRLG---------YPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCccC-------------ccEECCCCCE-EEEEECCCC---------CceEE
Confidence 3689999999999999988765332 3379999999 999875422 12599
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc-----cceEEEEEcCCCCCCCceeeecCcccccccCCC
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 354 (706)
++|+ ++++.++++.... ..+.|||||+.|++...... +..+||++|++++ +.+.|+....
T Consensus 305 ~~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-------- 369 (419)
T PRK04043 305 MKKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-------- 369 (419)
T ss_pred EEEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC--------
Confidence 9999 7888888875422 24699999999999874331 2368999999984 5677765421
Q ss_pred CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 355 SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 355 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
...++|||||+.|+|.... +....|+.++++.....+|..
T Consensus 370 ~~~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred cCCeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeec
Confidence 1137899999999998642 223357788886655555543
No 15
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=8.4e-22 Score=211.36 Aligned_cols=226 Identities=17% Similarity=0.205 Sum_probs=166.6
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
.+|||+... .+..+||++|.++...++++..... +..+.|||||+.|+|.+...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~~-------------- 217 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFES-------------- 217 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEccC--------------
Confidence 679998742 4467999999988888888765543 67899999999999986421
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 218 --------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 218 --------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 1257999999 5577777754 55678999999999999765533
Q ss_pred ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
..+||+++++++..++|+.....+ ..+.|||||+. |+|.++..+ . ..||.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~wSpDG~~-l~f~s~~~g-~--------~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGID-------------TEPFFSPDGRS-IYFTSDRGG-A--------PQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCCC-------------cCeEEcCCCCE-EEEEecCCC-C--------cEEEE
Confidence 358999999988888887754322 24589999998 887754322 1 24888
Q ss_pred ecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
+++ ++++.++++........+.|||||+.|++.+... +..+|+++|++++ +.+.+++... .-.+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g--~~~~lt~~~~--------~~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATG--QVTALTDTTR--------DESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCC--CeEEccCCCC--------ccCceE
Confidence 887 6777777774444456789999999999876443 4568999999884 4566653321 123789
Q ss_pred ccCCCEEEEeeec
Q 005240 361 TSTGTNVIAKIKK 373 (706)
Q Consensus 361 s~dg~~l~~~~~~ 373 (706)
+|||+.|++....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998743
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=5.1e-22 Score=213.00 Aligned_cols=227 Identities=16% Similarity=0.143 Sum_probs=168.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. ...++++.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++..++.
T Consensus 176 ~~L~~~D~dG----~~~~~l~~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g~- 241 (427)
T PRK02889 176 YQLQISDADG----QNAQSALSS--PEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKGS- 241 (427)
T ss_pred cEEEEECCCC----CCceEeccC--CCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 3566666633 666777632 3357899999999999998752 4557899999999999888755442
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||.+++
T Consensus 242 ----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 242 ----NSAPAWSPDGRTLAVALSRD----------------------------------------------GNSQIYTVNA 271 (427)
T ss_pred ----ccceEECCCCCEEEEEEccC----------------------------------------------CCceEEEEEC
Confidence 45789999999999875321 2268999999
Q ss_pred CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
++ ..++|+.. .....+.|||||++|+|++.+.. ..+||+++++++..++++.....
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~~------------ 329 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGSY------------ 329 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCCC------------
Confidence 55 78888876 44567899999999999876532 25899999888877777643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.....|||||+. |+|.....+ ...|+++|+ ++++.++++.. .....|.|+|||+.|+|..... +
T Consensus 330 -~~~~~~SpDG~~-Ia~~s~~~g---------~~~I~v~d~---~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 330 -NTSPRISPDGKL-LAYISRVGG---------AFKLYVQDL---ATGQVTALTDT-TRDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred -cCceEECCCCCE-EEEEEccCC---------cEEEEEEEC---CCCCeEEccCC-CCccCceECCCCCEEEEEEecC-C
Confidence 114589999998 887753221 124899998 67788888754 3457899999999999987654 5
Q ss_pred ceEEEEEcCCC
Q 005240 323 QTRTWLVCPGS 333 (706)
Q Consensus 323 ~~~l~~~d~~~ 333 (706)
...||.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 67899999976
No 17
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.2e-21 Score=210.81 Aligned_cols=252 Identities=15% Similarity=0.174 Sum_probs=181.2
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
+.+|||+....+ ......+||++|.+++..++|+.+... +..+.|||||+.|+|.+...
T Consensus 167 ~~~ia~v~~~~~---~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~~------------- 225 (433)
T PRK04922 167 WTRIAYVTVSGA---GGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFER------------- 225 (433)
T ss_pred cceEEEEEEeCC---CCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecCC-------------
Confidence 567999876321 113356899999998889999876543 67899999999999985321
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||+++++ |+.++++.. +....++|||||++|+|+.....
T Consensus 226 ---------------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 226 ---------------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred ---------------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 12689999994 577777755 45568899999999999865432
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+|+++++++++.++++...... ..+.|||||+. |+|.++..+. ..||
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~~-------------~~~~~spDG~~-l~f~sd~~g~---------~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGID-------------TEPTWAPDGKS-IYFTSDRGGR---------PQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCCc-------------cceEECCCCCE-EEEEECCCCC---------ceEE
Confidence 258999999998888887654321 24589999998 8887644321 2489
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
.+++ ++++.++++........+.|||||+.|++... .++..+|+++|++++ +.+.|+.... ...+.
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g--~~~~Lt~~~~--------~~~p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTG--SVRTLTPGSL--------DESPS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCC--CeEECCCCCC--------CCCce
Confidence 9988 67788888755445567999999999999764 334568999999884 4566654321 12367
Q ss_pred eccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
|+|||++|++.... ..+..|+.++++++..+++..
T Consensus 386 ~spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 386 FAPNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEEccc
Confidence 99999999998642 123468888886665555643
No 18
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2e-21 Score=208.94 Aligned_cols=229 Identities=17% Similarity=0.149 Sum_probs=167.4
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
..+|||+.... ......+||++|.++...++++..... +..+.|||||++|+|.+...
T Consensus 182 ~~riayv~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~~------------- 239 (448)
T PRK04792 182 LTRIAYVVVND----KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFEN------------- 239 (448)
T ss_pred cCEEEEEEeeC----CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEecC-------------
Confidence 36888887531 112246899999999888889876653 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 240 ---------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-- 284 (448)
T PRK04792 240 ---------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-- 284 (448)
T ss_pred ---------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC--
Confidence 1268999999 4577778765 44567899999999999865532
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++++...... ..+.|||||+. |+|.....+. ..||
T Consensus 285 --------~~~Iy~~dl~tg~~~~lt~~~~~~-------------~~p~wSpDG~~-I~f~s~~~g~---------~~Iy 333 (448)
T PRK04792 285 --------QPEIYVVDIATKALTRITRHRAID-------------TEPSWHPDGKS-LIFTSERGGK---------PQIY 333 (448)
T ss_pred --------CeEEEEEECCCCCeEECccCCCCc-------------cceEECCCCCE-EEEEECCCCC---------ceEE
Confidence 358999999999888887754322 24589999998 8877543221 2599
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
++|+ ++++.++|+........+.|||||+.|++.... .+..+||++|++++ +.+.+++... ...++
T Consensus 334 ~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g--~~~~lt~~~~--------d~~ps 399 (448)
T PRK04792 334 RVNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG--AMQVLTSTRL--------DESPS 399 (448)
T ss_pred EEEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC--CeEEccCCCC--------CCCce
Confidence 9998 778888887444445568999999999997643 35668999999984 4556643321 11357
Q ss_pred eccCCCEEEEeee
Q 005240 360 RTSTGTNVIAKIK 372 (706)
Q Consensus 360 ~s~dg~~l~~~~~ 372 (706)
|+|||+.|++...
T Consensus 400 ~spdG~~I~~~~~ 412 (448)
T PRK04792 400 VAPNGTMVIYSTT 412 (448)
T ss_pred ECCCCCEEEEEEe
Confidence 9999999998764
No 19
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=2.6e-21 Score=209.16 Aligned_cols=252 Identities=15% Similarity=0.150 Sum_probs=180.7
Q ss_pred CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCC
Q 005240 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~ 120 (706)
-..+|||++.... ..++..+||++|.+++..++++..... +..+.|||||++|+|.+...
T Consensus 161 f~~~ia~v~~~~~---~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERF---SVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCC---CCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcCC------------
Confidence 5668999875321 113456899999999988888765443 67889999999999986421
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCc
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1258999999 4588888765 45567999999999999876532
Q ss_pred ccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCcccee
Q 005240 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l 278 (706)
..+|+++|+++++.++|+...... ..+.|||||+. |+|..+..+. ..|
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~~spDg~~-i~f~s~~~g~---------~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAID-------------TEPFWGKDGRT-LYFTSDRGGK---------PQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCCc-------------CCeEECCCCCE-EEEEECCCCC---------ceE
Confidence 258999999999888887654322 24589999998 8887543221 258
Q ss_pred eeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCce
Q 005240 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (706)
Q Consensus 279 ~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (706)
|++++ ++++.++++........+.|||||+.|++..... +..+||++|++++ +.+.|++.... -.+
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg--~~~~lt~~~~~--------~~p 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRG--SVRILTDTSLD--------ESP 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCC--CEEEccCCCCC--------CCc
Confidence 99998 7788888875444556789999999999986433 4567999999984 46666543211 125
Q ss_pred EeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 359 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 359 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
.|||||++|++.... +++..|+.++++.+..+++.
T Consensus 380 ~~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 380 SVAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 789999999998643 22345777887654444443
No 20
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.2e-21 Score=210.87 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=172.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. +..++|+.. +..+..|+|||||++|||++.. .+..+||++++++++.++++..++.
T Consensus 184 ~~l~i~D~~g----~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~- 249 (433)
T PRK04922 184 YALQVADSDG----YNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI- 249 (433)
T ss_pred EEEEEECCCC----CCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC-
Confidence 3577777754 777888743 3358899999999999998742 4567899999999999998765432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||++++
T Consensus 250 ----~~~~~~SpDG~~l~~~~s~~----------------------------------------------g~~~Iy~~d~ 279 (433)
T PRK04922 250 ----NGAPSFSPDGRRLALTLSRD----------------------------------------------GNPEIYVMDL 279 (433)
T ss_pred ----ccCceECCCCCEEEEEEeCC----------------------------------------------CCceEEEEEC
Confidence 45789999999999875321 1258999999
Q ss_pred -CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 -~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+|+.++++.. .....++|||||++|+|++.+.. ..+||++++++++.++++.....
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~~------------ 337 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGNY------------ 337 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCCC------------
Confidence 4588888876 44567899999999999986543 24899999998888887643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
...++|||||+. |++.... ++ ...|+++|+ ++++.+.|+... ....+.|+|||+.|+|.+... +
T Consensus 338 -~~~~~~SpDG~~-Ia~~~~~-~~--------~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~-g 401 (433)
T PRK04922 338 -NARASVSPDGKK-IAMVHGS-GG--------QYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREG-G 401 (433)
T ss_pred -ccCEEECCCCCE-EEEEECC-CC--------ceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecC-C
Confidence 124689999998 8776432 11 125899998 778888887543 456889999999999987553 5
Q ss_pred ceEEEEEcCCCCCCCceee
Q 005240 323 QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (706)
...||.+++++. ..+.+
T Consensus 402 ~~~L~~~~~~g~--~~~~l 418 (433)
T PRK04922 402 RGVLAAVSTDGR--VRQRL 418 (433)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 678999999873 34444
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.8e-21 Score=210.33 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=168.6
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcccc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 86 (706)
|++.|.+. +..++++. .+..+..|+|||||++|||++.. ++..+||++++++|+.++++...+.
T Consensus 181 l~~~d~~g----~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 181 LQRSDYDG----ARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEECCCC----CCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC---
Confidence 56666644 77777763 33357899999999999998752 4557999999999999999865542
Q ss_pred ccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-
Q 005240 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD- 165 (706)
Q Consensus 87 ~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~- 165 (706)
...+.|||||++|+|..... +..+||++|++
T Consensus 245 --~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECCC
Confidence 45789999999999875321 12589999995
Q ss_pred CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCC
Q 005240 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (706)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~ 244 (706)
++.++|+.. .....+.|||||++|+|++...+ ..+||++++++++.++++..... .
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~~-------------~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGNY-------------N 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC-------------c
Confidence 478888876 45567899999999999986543 25899999998888887643211 1
Q ss_pred cceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccce
Q 005240 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 245 ~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
....|||||+. |+|....++ ...|+++|+ ++++.+.|+... ....+.|||||+.|+|.+... +..
T Consensus 334 ~~~~~Spdg~~-i~~~~~~~~---------~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~~ 398 (430)
T PRK00178 334 ARPRLSADGKT-LVMVHRQDG---------NFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ-GRG 398 (430)
T ss_pred cceEECCCCCE-EEEEEccCC---------ceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecC-Cce
Confidence 14589999998 887753321 124889998 778888887543 445789999999999987544 567
Q ss_pred EEEEEcCCCC
Q 005240 325 RTWLVCPGSK 334 (706)
Q Consensus 325 ~l~~~d~~~~ 334 (706)
+||.+++++.
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999873
No 22
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.87 E-value=3.2e-22 Score=194.45 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=128.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
...+.|+++||+|+.+++||+.|+|..+.. ..+....++|+.+++++|+++..+|++||+|+|+|+||++|++++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 356888999999999999999999887654 35566789999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeccCCCCCCCCCcc---c--------------------------------------------------hHH
Q 005240 623 APHLFCCGIARSGSYNKTLTPFG---F--------------------------------------------------QAE 649 (706)
Q Consensus 623 ~p~~~~a~v~~~~~~d~~~~~~~---~--------------------------------------------------~~~ 649 (706)
+|++|+|+++.+|++|....... + ++.
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~ 164 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQSL 164 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHHH
Confidence 99999999999999885532100 0 122
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
+|+++|+++++++++++||+++|.+..+....+.++++++||+++|+.
T Consensus 165 ~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 165 RLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999988888889999999999999974
No 23
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.1e-19 Score=193.08 Aligned_cols=222 Identities=19% Similarity=0.155 Sum_probs=157.1
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
+++|||+..+.+ .....+||++|.++...++++.+... +..+.|||||++|+|.+...
T Consensus 168 ~~ria~v~~~~~----~~~~~~i~i~d~dg~~~~~lt~~~~~-----v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKNG----GSQPYEVRVADYDGFNQFIVNRSSQP-----LMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEcC----CCceEEEEEECCCCCCceEeccCCCc-----cccceEcCCCCEEEEEEecC-------------
Confidence 689999986321 12347999999999888888865543 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++++ +|+.+.++.. +....++|||||++|++......
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1258999999 4566666644 44557999999999999865432
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++++..... ...+.|||||+. |+|..+.++. ..||
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-i~f~s~~~g~---------~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAGN-------------NTEPSWSPDGQS-ILFTSDRSGS---------PQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCCC-------------cCCEEECCCCCE-EEEEECCCCC---------ceEE
Confidence 24799999998888888765432 225699999998 8877543321 2488
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
.++. .++..+.+. ... ..+.|||||+.|++... ..++.+|+.++ +.+.++... . ...+.
T Consensus 320 ~~~~---~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~~-~-------~~~~~ 378 (429)
T PRK01742 320 RMSA---SGGGASLVG-GRG--YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSSTF-L-------DESPS 378 (429)
T ss_pred EEEC---CCCCeEEec-CCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCCC-C-------CCCce
Confidence 8887 566555553 222 46889999999998652 34788999884 344543221 1 12367
Q ss_pred eccCCCEEEEeee
Q 005240 360 RTSTGTNVIAKIK 372 (706)
Q Consensus 360 ~s~dg~~l~~~~~ 372 (706)
|+|||++|++...
T Consensus 379 ~sPdG~~i~~~s~ 391 (429)
T PRK01742 379 ISPNGIMIIYSST 391 (429)
T ss_pred ECCCCCEEEEEEc
Confidence 8999999998763
No 24
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.8e-18 Score=175.59 Aligned_cols=244 Identities=19% Similarity=0.186 Sum_probs=177.5
Q ss_pred CCCEEEEEEecCCCCcEEEEEECCCCce--eEeecCCCCCCCC--CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCC
Q 005240 437 NQLKILTSKESKTEITQYHILSWPLKKS--SQITNFPHPYPTL--ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (706)
Q Consensus 437 Dg~~l~~~~~~~~~p~~v~~~~~~~~~~--~~lt~~~~~~~~~--~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~ 512 (706)
+.+.+.|..+|+..|+.||.||+..++. ..+.......+.. ....++.+.++++||+.||+.|+.-+.. +..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcCC
Confidence 4568999999999999999999998732 1222221222332 3468999999999999999999995442 22345
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~ 589 (706)
.|++||+|||.-.+ +.. +|.. .-..|..+|++....+.||+.++|+.|..... -...++|++++
T Consensus 470 ~P~LLygYGay~is------l~p---~f~~----srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~ 536 (712)
T KOG2237|consen 470 KPLLLYGYGAYGIS------LDP---SFRA----SRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIAC 536 (712)
T ss_pred CceEEEEeccccee------ecc---cccc----ceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHH
Confidence 79999999985321 111 2211 11235669999888899999899998875422 22469999999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC------C--------cc----------
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------P--------FG---------- 645 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~------~--------~~---------- 645 (706)
++||+++++.-|+++++.|+|.||.|+..++.+.|++|+|+++..|+.|..-+ | +.
T Consensus 537 AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~ 616 (712)
T KOG2237|consen 537 AEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIK 616 (712)
T ss_pred HHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999873310 0 00
Q ss_pred ---------------c-----------------hHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCcc-cHHHHHH
Q 005240 646 ---------------F-----------------QAERFFDALKGH-------GALSRLVLLPFEHHVYAARE-NVMHVIW 685 (706)
Q Consensus 646 ---------------~-----------------~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~-~~~~~~~ 685 (706)
| .+.++..+|+.. ..|+-+.+..++||...++. ..++-..
T Consensus 617 i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a 696 (712)
T KOG2237|consen 617 ISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAA 696 (712)
T ss_pred ecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHH
Confidence 0 111555555532 24688889999999886543 3456666
Q ss_pred HHHHHHHHHh
Q 005240 686 ETDRWLQKYC 695 (706)
Q Consensus 686 ~~~~f~~~~l 695 (706)
..++||.+-+
T Consensus 697 ~~yaFl~K~~ 706 (712)
T KOG2237|consen 697 FRYAFLAKML 706 (712)
T ss_pred HHHHHHHHHh
Confidence 7788888755
No 25
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.2e-19 Score=192.93 Aligned_cols=226 Identities=17% Similarity=0.147 Sum_probs=161.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|+|.|.+. +..++++. ....+..|+|||||++|||++.. ++..+||++|+++++.++++...+.
T Consensus 184 ~~i~i~d~dg----~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~- 249 (429)
T PRK01742 184 YEVRVADYDG----FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH- 249 (429)
T ss_pred EEEEEECCCC----CCceEecc--CCCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc-
Confidence 4677777654 56666663 22358899999999999998752 4457899999999988888755432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||++|++..... +..+||++++
T Consensus 250 ----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d~ 279 (429)
T PRK01742 250 ----NGAPAFSPDGSRLAFASSKD----------------------------------------------GVLNIYVMGA 279 (429)
T ss_pred ----cCceeECCCCCEEEEEEecC----------------------------------------------CcEEEEEEEC
Confidence 45789999999999875311 1257999999
Q ss_pred C-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+ ++.++++.. .....+.|||||++|+|++.... ..+||.++..++..+.+. ...
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~-~~~------------- 335 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVG-GRG------------- 335 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEec-CCC-------------
Confidence 5 488888876 56778999999999999876543 247888888877666552 111
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
....|||||+. |++... +.++++|+ .+++.+.++.. .....+.|+|||+.|++.+.+ +.
T Consensus 336 --~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~ 394 (429)
T PRK01742 336 --YSAQISADGKT-LVMING-------------DNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GL 394 (429)
T ss_pred --CCccCCCCCCE-EEEEcC-------------CCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CC
Confidence 13479999998 776631 13677888 67777777643 345689999999999998753 34
Q ss_pred ceEEEEEcCCCCCCCceee
Q 005240 323 QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (706)
...++.+++++. ..+.|
T Consensus 395 ~~~l~~~~~~G~--~~~~l 411 (429)
T PRK01742 395 GKVLQLVSADGR--FKARL 411 (429)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 455677777763 34444
No 26
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.83 E-value=1.4e-18 Score=181.74 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=195.0
Q ss_pred CCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCC
Q 005240 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (706)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~ 118 (706)
||||+++++..+..+..+. +....+|++|+++++.++++.... ....+.|||||+.|+|...
T Consensus 1 S~d~~~~l~~~~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH-SFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS-EEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEeeee-ccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999998874332222 556789999999999999975522 2678899999999999842
Q ss_pred CCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCCc-------------------eEe
Q 005240 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (706)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~~-------------------~~~ 178 (706)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 68999988 55777777541 124
Q ss_pred eeeeCCCCcEEEEEeeccCcc-------ccccc--------cc--------ccceEEEEecCCCeeEEcccCCCCCCCCc
Q 005240 179 AVEPSPDQKYVLITSMHRPYS-------YKVPC--------AR--------FSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~-------~~~~~--------~~--------~~~~i~~~~~~~~~~~~l~~~~~~~~~p~ 235 (706)
.+.|||||++|+|...+...- +.... .. -.-.++++++.+++...+........
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~--- 181 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP--- 181 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT---
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC---
Confidence 677999999999988765211 00000 00 11467888888776544322200000
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccc---cccceec-CC
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLR---FRSVSWC-DD 309 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~---~~~~~ws-pD 309 (706)
.......+.|++|++. |++... +. ..++..++++|+ .+++.+.+... ..- ...+.|. ++
T Consensus 182 ----~~~yl~~v~W~~d~~~-l~~~~~-nR------~q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 182 ----QDYYLTRVGWSPDGKR-LWVQWL-NR------DQNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp ----SSEEEEEEEEEETTEE-EEEEEE-ET------TSTEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred ----CccCcccceecCCCcE-EEEEEc-cc------CCCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 0011337899999985 544421 11 123335888888 66766655422 222 2345555 89
Q ss_pred CceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (706)
+..+++.+. .++..+||.++.++ +.+++|+.+...-.. ...++++++.|+|.+.. .
T Consensus 247 ~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a~~--------------~- 302 (353)
T PF00930_consen 247 GNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEVTS------ILGWDEDNNRIYFTANG--------------D- 302 (353)
T ss_dssp SSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-EEE------EEEEECTSSEEEEEESS--------------G-
T ss_pred CCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceeecc------cceEcCCCCEEEEEecC--------------C-
Confidence 988988876 66899999999999 456787665532210 14567888888887632 1
Q ss_pred CCCCCCceeeeecC-CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCc
Q 005240 390 PEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (706)
Q Consensus 390 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~ 452 (706)
+..+++||+++++ +|+.++|+...+. ...++||||+++++.+++.+..|+
T Consensus 303 -~p~~r~lY~v~~~~~~~~~~LT~~~~~------------~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 303 -NPGERHLYRVSLDSGGEPKCLTCEDGD------------HYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -GTTSBEEEEEETTETTEEEESSTTSST------------TEEEEE-TTSSEEEEEEESSSSCE
T ss_pred -CCCceEEEEEEeCCCCCeEeccCCCCC------------ceEEEECCCCCEEEEEEcCCCCCC
Confidence 1456789999999 8888889866542 026899999999999999998885
No 27
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.81 E-value=1.7e-17 Score=163.87 Aligned_cols=371 Identities=17% Similarity=0.119 Sum_probs=227.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|+.++|.. |+.++||+ .-.-+..|++||||++|||++-. ....-...+||+++.++|+++++|.....
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~---~~ss~~taDly~v~~e~Ge~kRiTyfGr~-- 128 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVM---LGSSLQTADLYVVPSEDGEAKRITYFGRR-- 128 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEE---ecCCCccccEEEEeCCCCcEEEEEEeccc--
Confidence 355667766 99999983 22246789999999999996632 11223457899999999999999987432
Q ss_pred ccccc-ceEEecCCcEEEEEecCCCCCC-------------CCCCCCCCCCcee-ecCCCcccccccchh----------
Q 005240 86 NAVFG-SFVWVNNSTLLIFTIPSSRRDP-------------PKKTMVPLGPKIQ-SNEQKNIIISRMTDN---------- 140 (706)
Q Consensus 86 ~~~~~-~~~wSpDg~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------- 140 (706)
+. -..|+|||+.|+.+- ....+ .....++.|+... ...++..+.+|.+.+
T Consensus 129 ---fT~VaG~~~dg~iiV~TD--~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 129 ---FTRVAGWIPDGEIIVSTD--FHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred ---cceeeccCCCCCEEEEec--cCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 33 346999999887651 11111 1111122232211 122334444443221
Q ss_pred ---ccCCchhhh-hh------------------------hhcccceEEEEccCC-CceecCCCceEeeeeeCCCCcEEEE
Q 005240 141 ---LLKDEYDES-LF------------------------DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 141 ---~~~~~~d~~-~~------------------------~~~~~~~l~~~~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~ 191 (706)
.++-+.++. .+ ...+.++||.+|++| ..++-|...++-.-..+.|||+|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 111111111 00 012457899999988 7888887744444446889999999
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeEEcccC-CCC--CCCCcccCccCCCCcceeeec-CCCceEEEEEeccCCC
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPA--EDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGD 267 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~--~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~ 267 (706)
... .+||++|.++..++.|.-+ +.. ...+.++. ....--.|++ +|.. +++++
T Consensus 284 q~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~---pskyledfa~~~Gd~-ia~VS------ 339 (668)
T COG4946 284 QNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVN---PSKYLEDFAVVNGDY-IALVS------ 339 (668)
T ss_pred ecC--------------CcEEEeCCCcCcceeeecCCccccccccccccC---HHHhhhhhccCCCcE-EEEEe------
Confidence 864 3799999998888877554 222 11222221 0011112333 3444 55552
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
|+..|+++. ..+-.-++. ..+.+....++-|+..++....+. -.|-++|.+++ +.+.+ +.+..
T Consensus 340 -------RGkaFi~~~---~~~~~iqv~-~~~~VrY~r~~~~~e~~vigt~dg---D~l~iyd~~~~--e~kr~-e~~lg 402 (668)
T COG4946 340 -------RGKAFIMRP---WDGYSIQVG-KKGGVRYRRIQVDPEGDVIGTNDG---DKLGIYDKDGG--EVKRI-EKDLG 402 (668)
T ss_pred -------cCcEEEECC---CCCeeEEcC-CCCceEEEEEccCCcceEEeccCC---ceEEEEecCCc--eEEEe-eCCcc
Confidence 334666665 333333333 344466677777877777654332 25778888884 33333 33332
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
.+ +.+..|+||+++++.. ++-+||.+|+++|+.+.+-....+ +
T Consensus 403 ~I------~av~vs~dGK~~vvaN---------------------dr~el~vididngnv~~idkS~~~--------l-- 445 (668)
T COG4946 403 NI------EAVKVSPDGKKVVVAN---------------------DRFELWVIDIDNGNVRLIDKSEYG--------L-- 445 (668)
T ss_pred ce------EEEEEcCCCcEEEEEc---------------------CceEEEEEEecCCCeeEecccccc--------e--
Confidence 22 3366799999887763 345799999999988777555432 1
Q ss_pred CCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~ 471 (706)
.....|||++++++|..-+.--.+.|.++|..+++...+|+.+
T Consensus 446 -Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t 488 (668)
T COG4946 446 -ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT 488 (668)
T ss_pred -eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc
Confidence 2257999999999998776666778999999999999999764
No 28
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=1.1e-17 Score=180.82 Aligned_cols=232 Identities=18% Similarity=0.201 Sum_probs=167.7
Q ss_pred CCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCC
Q 005240 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (706)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~ 118 (706)
.+.+.+++|++... ..+..+||++|.+++..++++..... +..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSG-----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeC-----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC----------
Confidence 34578899987531 14567899999998888989865432 56789999999999975321
Q ss_pred CCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeecc
Q 005240 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (706)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (706)
...+||++++ +|+.+.++.. +....++|||||++|+|+....
T Consensus 212 ------------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 212 ------------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ------------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 1257999999 5566666554 4556789999999999886543
Q ss_pred CcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccc
Q 005240 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (706)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~ 276 (706)
. ..+|+++++++++.++++...... ....|+|||+. |+|.....+. .
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~~-------------~~~~~s~dg~~-l~~~s~~~g~---------~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGID-------------TEPSWSPDGKS-IAFTSDRGGS---------P 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCCC-------------CCEEECCCCCE-EEEEECCCCC---------c
Confidence 2 258999999988888887654321 14589999998 8777543221 2
Q ss_pred eeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCC
Q 005240 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (706)
.||++++ ++++.++++........+.|+|||+.|++..... +..+|+.+|++++ ..+.+.+... ..
T Consensus 303 ~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~--------~~ 368 (417)
T TIGR02800 303 QIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL--------DE 368 (417)
T ss_pred eEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC--------CC
Confidence 5899998 6777777876666677899999999999876433 5668999999883 4455543211 12
Q ss_pred ceEeccCCCEEEEeeec
Q 005240 357 MMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 357 ~~~~s~dg~~l~~~~~~ 373 (706)
.+.|+|||++|++....
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 35789999999988743
No 29
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.80 E-value=5.8e-19 Score=181.57 Aligned_cols=245 Identities=18% Similarity=0.176 Sum_probs=193.7
Q ss_pred ecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCC
Q 005240 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (706)
Q Consensus 433 ~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~ 512 (706)
+-+.||..+.+..+++..|+.+|+.++.+++.+.+......+. ....+.|+...+++||+.||++|+. ++.+.. +
T Consensus 346 ~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~FD-a~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~ 420 (648)
T COG1505 346 SADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQFD-ADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---E 420 (648)
T ss_pred cCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCCcC-ccCceEEEEEEEcCCCccccEEEEe-cCCcCC---C
Confidence 3445688999999999999999999999998888876544333 2457889999999999999999998 764332 4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~ 589 (706)
.|++||.|||...+ -. ..|+ .....|.++|.+-+..|-||+..||.+|..... ....++|+.++
T Consensus 421 ~pTll~aYGGF~vs--------lt-P~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AV 487 (648)
T COG1505 421 NPTLLYAYGGFNIS--------LT-PRFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAV 487 (648)
T ss_pred CceEEEeccccccc--------cC-Cccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHH
Confidence 69999999995421 11 1232 223788999988877799998889988765433 33679999999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------Ccc---------
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------PFG--------- 645 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------~~~--------- 645 (706)
++.|+++++..|.++||+|.|-||.|+..++++.|+.|.|+++..|+.|+.-. |..
T Consensus 488 aedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~ 567 (648)
T COG1505 488 AEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLA 567 (648)
T ss_pred HHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999885421 000
Q ss_pred ------------c-----------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHHh
Q 005240 646 ------------F-----------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV-MHVIWETDRWLQKYC 695 (706)
Q Consensus 646 ------------~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~f~~~~l 695 (706)
| .+.+|+.+|+..+.++-+.+=-++||.-..+... ......++.||.+.|
T Consensus 568 YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 568 YSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred cCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 0 1119999999999998888878899987655443 456667888998876
No 30
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.80 E-value=8.4e-18 Score=181.67 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=165.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.+.+. +..++++.. +..+..|+|||||++|||+... .+..+||++++++++.++++.....
T Consensus 169 ~~~l~~~d~~g----~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~~ 235 (417)
T TIGR02800 169 RYELQVADYDG----ANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPGM 235 (417)
T ss_pred cceEEEEcCCC----CCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCCC
Confidence 34577777754 778888742 2247789999999999998742 3457899999999988887654432
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 236 -----~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d 264 (417)
T TIGR02800 236 -----NGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMD 264 (417)
T ss_pred -----ccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEE
Confidence 45689999999998874311 125799999
Q ss_pred cC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+. ++.++++.. .....+.|+|||++|+|.+.... ..+||++++++++.++++.....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~~~----------- 323 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRGGY----------- 323 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC-----------
Confidence 94 577778766 44457899999999999876542 24899999998887777644221
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
...+.|||||+. |++..... .+..|+++|+ +++..+.++.. .....+.|+|||+.|++.+...
T Consensus 324 --~~~~~~spdg~~-i~~~~~~~---------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 324 --NASPSWSPDGDL-IAFVHREG---------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred --ccCeEECCCCCE-EEEEEccC---------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 225689999987 77664321 1235899998 56666666543 3456789999999999987544
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
+...||+++.++.
T Consensus 387 ~~~~l~~~~~~g~ 399 (417)
T TIGR02800 387 GRGVLGLVSTDGR 399 (417)
T ss_pred CcEEEEEEECCCc
Confidence 4567888887763
No 31
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.3e-17 Score=174.89 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=159.5
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
......|+|||||+.|+|..... .+...+|++++++++..++....+. ...++|||||++|+|.....
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fspDG~~l~f~~~rd- 259 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN-----NGAPAFSPDGSKLAFSSSRD- 259 (425)
T ss_pred CcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-----cCCccCCCCCCEEEEEECCC-
Confidence 33577899999999999997531 2227899999999988888765543 46789999999999986432
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCc
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
+..+||++|+++ +..+|+.. +....+.|||||+
T Consensus 260 ---------------------------------------------g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 260 ---------------------------------------------GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ---------------------------------------------CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 226899999976 77778887 5666999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
+|+|++.+.. ..+|++++++++..++++...+... ...|||||+. |+|.... .+.
T Consensus 295 ~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~~-------------~p~~SpdG~~-i~~~~~~-~g~ 349 (425)
T COG0823 295 KIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGNS-------------NPVWSPDGDK-IVFESSS-GGQ 349 (425)
T ss_pred EEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCCc-------------CccCCCCCCE-EEEEecc-CCc
Confidence 9999988765 3599999999999999988765543 3389999998 8877522 222
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. .+...++ .++...++.........+.|++||+.|+|.+... +...|+.+..++.
T Consensus 350 -~-------~i~~~~~---~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~ 404 (425)
T COG0823 350 -W-------DIDKNDL---ASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGR 404 (425)
T ss_pred -e-------eeEEecc---CCCCcEEEccccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccce
Confidence 1 2566666 3333245555667778999999999999986444 5667888887773
No 32
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.75 E-value=1.5e-15 Score=152.02 Aligned_cols=341 Identities=11% Similarity=0.106 Sum_probs=174.8
Q ss_pred CCeeeeecCCCC---CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe
Q 005240 19 GPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 19 g~~~~i~~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS 95 (706)
-+.+|||..+.. ....+..|++||++|+|.+++ ++..+||++|+++++++|||.+++.. .-...+|
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s 89 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLS 89 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----ccceEEe
Confidence 355566533321 266789999999999998764 77899999999999999999876431 2256889
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP 174 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~ 174 (706)
|+++.|+|... ..+|+.++|+. +.+.|...
T Consensus 90 ~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 90 PDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--EEEEEE-
T ss_pred cCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcEEEEEEC
Confidence 99998877531 15799999944 65555433
Q ss_pred --ceE--eeeeeCCCCcEEEEEeeccCcccccc---------cccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 175 --AVY--TAVEPSPDQKYVLITSMHRPYSYKVP---------CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 175 --~~~--~~~~~SpDG~~i~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
... .......|++.++.....+......+ ...-.+.|+.+++.+++.+.+.....
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------------ 188 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------------ 188 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------------
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc------------
Confidence 222 33334578888877665443211000 11223789999999998888766542
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeec
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~ 319 (706)
....+.+||.....|.|+-. +.-. .+ ..+||.++. +++..+.+... ...+..-.|+|||..|.|.+-.
T Consensus 189 -wlgH~~fsP~dp~li~fCHE--Gpw~--~V--d~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 189 -WLGHVQFSPTDPTLIMFCHE--GPWD--LV--DQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp --EEEEEEETTEEEEEEEEE---S-TT--TS--S-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred -cccCcccCCCCCCEEEEecc--CCcc--ee--ceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 12367899988776777732 2111 11 126899998 77777777543 3445566799999999987542
Q ss_pred c-ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCcee
Q 005240 320 K-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 398 (706)
Q Consensus 320 ~-~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 398 (706)
. ....-|+.+|++++ +.+.+...+.. ..+.-++||+.++-.... . ...+- ...|..- ...+.|+
T Consensus 259 ~~~~~~~i~~~d~~t~--~~~~~~~~p~~--------~H~~ss~Dg~L~vGDG~d--~-p~~v~-~~~~~~~-~~~p~i~ 323 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG--ERRRLMEMPWC--------SHFMSSPDGKLFVGDGGD--A-PVDVA-DAGGYKI-ENDPWIY 323 (386)
T ss_dssp TTT--EEEEEE-TTT----EEEEEEE-SE--------EEEEE-TTSSEEEEEE------------------------EEE
T ss_pred CCCCceEEEeeCCCCC--CceEEEeCCce--------eeeEEcCCCCEEEecCCC--C-Ccccc-cccccee-cCCcEEE
Confidence 3 23456888999985 34444322211 124458999987665321 0 11110 0011111 2356788
Q ss_pred eeecCCCceeeeecccchhhhhhhhhh-ccCCC-ceecccCCCEEEEEEecCCCCcEEEEEECC
Q 005240 399 LFDINTGSKERIWESNREKYFETAVAL-VFGQG-EEDINLNQLKILTSKESKTEITQYHILSWP 460 (706)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~ 460 (706)
++++.++...+|-..... . .+... ....+ .++|||||++++|+. +...++.||++++.
T Consensus 324 ~~~~~~~~~~~l~~h~~s--w-~v~~~~~q~~hPhp~FSPDgk~VlF~S-d~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTS--W-KVLDGDRQVTHPHPSFSPDGKWVLFRS-DMEGPPAVYLVEIP 383 (386)
T ss_dssp EEETTTTEEEEEEE----------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred EeccccCceeeeeeccCc--c-eeecCCCccCCCCCccCCCCCEEEEEC-CCCCCccEEEEeCc
Confidence 899988877666443210 0 01000 00011 589999999999975 44688999998864
No 33
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.75 E-value=2.9e-16 Score=164.76 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=162.9
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
....+||+.|-++-..+.++..... +..+.|+||++.|+|.+-..+.
T Consensus 170 ~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~~~~---------------------------- 216 (425)
T COG0823 170 PLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFELGG---------------------------- 216 (425)
T ss_pred CCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEecCC----------------------------
Confidence 4568899999886666666654442 5678999999999987532111
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..++|++++ .| ..+.++..+....+.|||||++|+|...+.. ..+||++|+
T Consensus 217 -----------------~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----------~~~iy~~dl 269 (425)
T COG0823 217 -----------------CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----------SPDIYLMDL 269 (425)
T ss_pred -----------------CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----------CccEEEEcC
Confidence 157999999 55 4445554467779999999999999998764 469999999
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 296 (706)
.++..++|+...+.+..| .|||||+. |+|+++..+.- .||+++. +++..++++.
T Consensus 270 ~~~~~~~Lt~~~gi~~~P-------------s~spdG~~-ivf~Sdr~G~p---------~I~~~~~---~g~~~~riT~ 323 (425)
T COG0823 270 DGKNLPRLTNGFGINTSP-------------SWSPDGSK-IVFTSDRGGRP---------QIYLYDL---EGSQVTRLTF 323 (425)
T ss_pred CCCcceecccCCccccCc-------------cCCCCCCE-EEEEeCCCCCc---------ceEEECC---CCCceeEeec
Confidence 999988899888776555 89999999 99997554322 4999999 7888899987
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
..+....|.|||||++|++.... .+...+...++.++. ..+.+....... .++|.++|+.+.+...
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~-~~~~lt~~~~~e--------~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG-KIRILTSTYLNE--------SPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC-cEEEccccccCC--------CCCcCCCCceEEEecc
Confidence 77777799999999999998733 344678888887753 234443322211 2567999999988763
No 34
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.73 E-value=2.7e-16 Score=164.46 Aligned_cols=299 Identities=16% Similarity=0.187 Sum_probs=185.5
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
+...++|+++.. ++.++|... ......+.|||||++|||+.+ .+||+.++.+++.+|||..+.
T Consensus 21 ~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEeccccc
Confidence 456789999988 988888732 346889999999999999863 699999999999999997663
Q ss_pred cccc-c------------cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch--hccCCchh
Q 005240 83 ICLN-A------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD--NLLKDEYD 147 (706)
Q Consensus 83 ~~~~-~------------~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d 147 (706)
..+. + ....+-|||||++|+|..-+.+..... . .+.....+. .|. ..+.|+.-
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~-~------~~~~~~~~~-----~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY-P------LPDYSPPDS-----QYPEVESIRYPKA 151 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE-E------EEEESSSTE-----SS-EEEEEE--BT
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE-E------eeccCCccc-----cCCcccccccCCC
Confidence 3211 1 123567999999999985443332100 0 000000000 000 01111111
Q ss_pred hhhhhhcccceEEEEccC-CCceecCC------C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 148 ESLFDYYTTAQLVLGSLD-GTAKDFGT------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l~-g~~~~lt~------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
|.-. ....|+++++. ++...+.. . ..+..+.|++|+++|++....+... ...+.++|+.++
T Consensus 152 G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg 220 (353)
T PF00930_consen 152 GDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTG 220 (353)
T ss_dssp TS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTT
T ss_pred CCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCC
Confidence 1100 33689999994 45434321 1 5678999999999888777665432 357788888766
Q ss_pred eeEEcccCCCCCCCCcccCccCCCCcceeee-cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc
Q 005240 220 LVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (706)
Q Consensus 220 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s-pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 298 (706)
..+.+.... .+.|+. ....+.|. +++.. ++|+...++. ..||.++. +++.+++||...
T Consensus 221 ~~~~~~~e~----~~~Wv~----~~~~~~~~~~~~~~-~l~~s~~~G~---------~hly~~~~---~~~~~~~lT~G~ 279 (353)
T PF00930_consen 221 ETRVVLEET----SDGWVD----VYDPPHFLGPDGNE-FLWISERDGY---------RHLYLYDL---DGGKPRQLTSGD 279 (353)
T ss_dssp TCEEEEEEE----SSSSSS----SSSEEEE-TTTSSE-EEEEEETTSS---------EEEEEEET---TSSEEEESS-SS
T ss_pred ceeEEEEec----CCccee----eecccccccCCCCE-EEEEEEcCCC---------cEEEEEcc---cccceeccccCc
Confidence 555444221 111211 01244555 88887 7777664431 25999998 788888999888
Q ss_pred cccc-cceecCCCceEEEEeeccc-cceEEEEEcCC-CCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 299 LRFR-SVSWCDDSLALVNETWYKT-SQTRTWLVCPG-SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 299 ~~~~-~~~wspDg~~l~~~~~~~~-~~~~l~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+. -+.|.++++.|+|.+.... ...+||+++++ + ++++.|+...... +.+++||||++++..-
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--~~~~~LT~~~~~~-------~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--GEPKCLTCEDGDH-------YSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--TEEEESSTTSSTT-------EEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--CCeEeccCCCCCc-------eEEEECCCCCEEEEEE
Confidence 7774 4679999999999876533 67799999999 6 5678886544322 3477899999988765
No 35
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=4.4e-16 Score=151.37 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=145.2
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+.+...| .++.+++.+|.. .++.|+||++|+-. +........+..|++.||+|+.++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 567788766 799999999986 23359999999731 112223466788999999999977
Q ss_pred CCCcCCCCCCCCc-h---h-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 563 SIPIIGEGDKLPN-D---R-------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 563 ~~~~~g~g~~~~~-~---~-------~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
-....|....... . . .......|+.++++||.+++.+|+.||+++|+||||.+|+.++.+.| .++|++
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 6654443222221 0 0 01467899999999999998899999999999999999999999986 899999
Q ss_pred eccCCCCCCC--------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----------cHH
Q 005240 632 ARSGSYNKTL--------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARE----------NVM 681 (706)
Q Consensus 632 ~~~~~~d~~~--------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----------~~~ 681 (706)
++.|..-... .|.. -..+.+.++|...++.+++.+|+++.|.|.+.. ...
T Consensus 141 ~fyg~~~~~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~ 220 (236)
T COG0412 141 AFYGGLIADDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAE 220 (236)
T ss_pred EecCCCCCCcccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHH
Confidence 9998654211 1111 122488899999989999999999999998542 146
Q ss_pred HHHHHHHHHHHHHhc
Q 005240 682 HVIWETDRWLQKYCL 696 (706)
Q Consensus 682 ~~~~~~~~f~~~~l~ 696 (706)
..++++++||++++.
T Consensus 221 ~a~~~~~~ff~~~~~ 235 (236)
T COG0412 221 DAWQRVLAFFKRLLG 235 (236)
T ss_pred HHHHHHHHHHHHhcc
Confidence 899999999999874
No 36
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.68 E-value=4.2e-16 Score=151.95 Aligned_cols=180 Identities=21% Similarity=0.192 Sum_probs=124.4
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~ 574 (706)
|.+++..|++- +|.|+||++|+- .+........+..|+++||.|+.++.....+......
T Consensus 1 ~~ay~~~P~~~-----~~~~~Vvv~~d~---------------~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEGG-----GPRPAVVVIHDI---------------FGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETTS-----SSEEEEEEE-BT---------------TBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCCC-----CCCCEEEEEcCC---------------CCCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 57899999862 358999999973 1121122356788999999999988865544101111
Q ss_pred -c-hhh--------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC-CC-----
Q 005240 575 -N-DRF--------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YN----- 638 (706)
Q Consensus 575 -~-~~~--------~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~-~d----- 638 (706)
. ... .+....|+.+++++|.+++.+++.||+++|+|+||.+++.++.+. ..++|+++..|. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~~~~~~~ 139 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSPPPPPLE 139 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSSGGGHHH
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCCCCcchh
Confidence 1 111 235678899999999998878999999999999999999998887 789999999992 11
Q ss_pred ---CCCCCcc---------ch---HHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-------HHHHHHHHHHHHHHHh
Q 005240 639 ---KTLTPFG---------FQ---AERFFDALKGHGALSRLVLLPFEHHVYAAREN-------VMHVIWETDRWLQKYC 695 (706)
Q Consensus 639 ---~~~~~~~---------~~---~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-------~~~~~~~~~~f~~~~l 695 (706)
....|.. +. -+++.++|++.++++++.+|||++|+|..+.. ..+.++++++||++||
T Consensus 140 ~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 140 DAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp HGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred hhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 0011211 11 23788999999999999999999999975432 4688999999999986
No 37
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.63 E-value=7.1e-15 Score=149.11 Aligned_cols=192 Identities=21% Similarity=0.178 Sum_probs=127.1
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..++...|+|.+.+|..|.|++++|.+- ++++|+||.+||.+-. .. .......+++.||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~-------------~~---~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR-------------SG---DPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT---------------GG---GHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC-------------CC---CcccccccccCCeE
Confidence 4467788999999999999999999851 3469999999985310 00 11223457899999
Q ss_pred EEEcCCCCcCCC------------------CCCC-CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 558 VLAGPSIPIIGE------------------GDKL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 558 v~~~~~~~~~g~------------------g~~~-~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
|+..+.+|..|. |... ....+...++.|...++++|.+++.+|++||+++|.|+||.++++
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 998555543321 1111 223356678899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCC-C------C--CCcc----c---------------------------------------
Q 005240 619 LLAHAPHLFCCGIARSGSYNK-T------L--TPFG----F--------------------------------------- 646 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~-~------~--~~~~----~--------------------------------------- 646 (706)
+++.+ ++++++++..|.+.. . . .|+. |
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 679999988885421 1 0 1110 0
Q ss_pred ------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 647 ------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 647 ------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.+.-.+.+......+.++++||..+|.... ....++.++||.+|
T Consensus 271 l~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCPPSTQFAAYNAIPGPKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS-HHHHHHHHCC--SSEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCCchhHHHHHhccCCCeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 000444444444557899999999997642 33367899999875
No 38
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.63 E-value=3e-14 Score=143.77 Aligned_cols=197 Identities=18% Similarity=0.216 Sum_probs=127.7
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeE
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~ 557 (706)
.+.+.+++.+. .+.+++..+|+|+++... ++|+|+++||.+.. . ..+. .....+.++ +.||+
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~--------~---~~~~--~~~~~~~la~~~g~~ 74 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCT--------H---ENFM--IKAGAQRFAAEHGLA 74 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCC--------c---cHHH--hhhHHHHHHhhcCcE
Confidence 35566666665 567899999999875332 48999999997421 1 1110 011233454 47999
Q ss_pred EEEcCC--CCcC--C--------CCCCCC-c---hhhH--HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHH
Q 005240 558 VLAGPS--IPII--G--------EGDKLP-N---DRFV--EQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 558 v~~~~~--~~~~--g--------~g~~~~-~---~~~~--~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~ 618 (706)
|++++. +|.. + .+..+. + ..+. ......+...+..+++. ..+|+++++|+|+||||++|+.
T Consensus 75 Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~ 154 (275)
T TIGR02821 75 LVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALV 154 (275)
T ss_pred EEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHH
Confidence 999776 2211 1 111110 0 0000 01122333333333343 3488999999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCCCC----------------------------------c-----------cc--hHHHH
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTLTP----------------------------------F-----------GF--QAERF 651 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~~~----------------------------------~-----------~~--~~~~~ 651 (706)
++.++|++|+++++.+|+.+....+ . .. +..++
T Consensus 155 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~ 234 (275)
T TIGR02821 155 IALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAF 234 (275)
T ss_pred HHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHH
Confidence 9999999999999999885432100 0 00 12379
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.++|+++++++++++|||++|.|.. .....++.++|+.+++
T Consensus 235 ~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 235 EQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999999999999999874 4566778888887753
No 39
>PRK10162 acetyl esterase; Provisional
Probab=99.60 E-value=4.9e-14 Score=145.00 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=137.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
..+.+.+++.+| .|+..+|+|.. . +.|+|||+|||++.. ++...+ ...+..|++ .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFIL--------GNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccC--------CCchhh----hHHHHHHHHHcCCEEE
Confidence 477788888777 69999999953 1 258999999997532 221111 134566776 699999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhC------CCceeEE
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCCG 630 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~------p~~~~a~ 630 (706)
.++++..... . ....++|+.++++|+.+. --+|++||+|+|+|+||.||+.++.+. +.+++++
T Consensus 117 ~vdYrlape~--~------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPEA--R------FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCCC--C------CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 9898754321 1 122478888999999764 237999999999999999999998652 3578889
Q ss_pred EeccCCCCCCCC----------------------------------Cc----------c---------------chHHHH
Q 005240 631 IARSGSYNKTLT----------------------------------PF----------G---------------FQAERF 651 (706)
Q Consensus 631 v~~~~~~d~~~~----------------------------------~~----------~---------------~~~~~~ 651 (706)
++.+|+++.... |. . -+.++|
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~de~~~~ 268 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLLDDSRLL 268 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCcChHHHH
Confidence 998887542100 00 0 023399
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhc
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~~l~ 696 (706)
.++|++.|+++++++|+|..|+|... ....+.++.+.+||+++++
T Consensus 269 ~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 269 YQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998632 2246788899999999874
No 40
>PLN02442 S-formylglutathione hydrolase
Probab=99.60 E-value=9e-14 Score=140.51 Aligned_cols=196 Identities=21% Similarity=0.206 Sum_probs=124.4
Q ss_pred CceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
...+.+++.+ .-|.+++..+|+|+. .++ +++|+|+++||.+.. ...|... ....+.+...||+|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~--------~~~~~~~----~~~~~~~~~~g~~V 80 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCT--------DENFIQK----SGAQRAAAARGIAL 80 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcC--------hHHHHHh----hhHHHHHhhcCeEE
Confidence 4556666666 367899999999984 222 359999999996421 0011100 11234456689999
Q ss_pred EEcCCC--CcC----------CCCCCCC----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 559 LAGPSI--PII----------GEGDKLP----N-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 559 ~~~~~~--~~~----------g~g~~~~----~-----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
+.++.. |.. +++..+. . ..+.....+++...++... ..+|+++++|+|+||||++|+
T Consensus 81 v~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 81 VAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred EecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 997753 211 1111110 0 0111223344433333322 236899999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCCCC-----------------------------------Cc-------------cchHH
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKTLT-----------------------------------PF-------------GFQAE 649 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~~~-----------------------------------~~-------------~~~~~ 649 (706)
.++.++|++|+++++.+|+++.... |. ..+..
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHH
Confidence 9999999999999999998763210 00 00234
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.++++|++.+.+++++++||++|.+. ......++.+.|..+++
T Consensus 239 ~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 239 NFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999865 23344445555555554
No 41
>PRK10566 esterase; Provisional
Probab=99.59 E-value=7.5e-14 Score=139.40 Aligned_cols=175 Identities=17% Similarity=0.215 Sum_probs=119.3
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (706)
.+..+.+.|..- . +++.|+||++||.+.. .. .....++.|+++||.|++++.++ +|.+.
T Consensus 11 ~~~~~~~~p~~~-~--~~~~p~vv~~HG~~~~-----------~~----~~~~~~~~l~~~G~~v~~~d~~g---~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ-R--DTPLPTVFFYHGFTSS-----------KL----VYSYFAVALAQAGFRVIMPDAPM---HGARF 69 (249)
T ss_pred CcceEEEcCCCC-C--CCCCCEEEEeCCCCcc-----------cc----hHHHHHHHHHhCCCEEEEecCCc---ccccC
Confidence 455677888641 1 2357999999996421 00 11245678889999999977764 33221
Q ss_pred C------chh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC--CCC----
Q 005240 574 P------NDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYN---- 638 (706)
Q Consensus 574 ~------~~~---~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~--~~d---- 638 (706)
. ... .....++|+.++++++.+++.+|++||+++|+|+||+++++++.+.|+.. +++.+.+ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVK-CVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCee-EEEEeeCcHHHHHHHH
Confidence 1 111 12345688889999999888899999999999999999999999987644 4333221 100
Q ss_pred ----C------------------------------C-CCCcc------------chHHHHHHHHHhCCCc--EEEEEeCC
Q 005240 639 ----K------------------------------T-LTPFG------------FQAERFFDALKGHGAL--SRLVLLPF 669 (706)
Q Consensus 639 ----~------------------------------~-~~~~~------------~~~~~~~~~l~~~~~~--~~~~~~~~ 669 (706)
. . ..|.. .+.++++++|+..+.+ ++++.|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~ 228 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPG 228 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCC
Confidence 0 0 01111 0234889999998864 78999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 670 EHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 670 ~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
++|.+. ...++.+.+||+++|
T Consensus 229 ~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 229 VRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCccC-----HHHHHHHHHHHHhhC
Confidence 999875 257899999999875
No 42
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.57 E-value=1.7e-13 Score=145.39 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=127.3
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...|.++++..+|..|+|+++.|+. .+|.|+||++||. . +.. .......++.|+++||+|+
T Consensus 166 ~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~-~-----------~~~--~~~~~~~~~~La~~Gy~vl 226 (414)
T PRK05077 166 GELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGL-D-----------SLQ--TDYYRLFRDYLAPRGIAML 226 (414)
T ss_pred CceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCc-c-----------cch--hhhHHHHHHHHHhCCCEEE
Confidence 4678999998888899999999973 1257988865542 1 100 0011134567889999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
+.+.+ |+|.+.... ...+......++++++.+.+.+|++||+++|+|+||++++.++.+.|++++|+|+.+|+++.
T Consensus 227 ~~D~p---G~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~ 302 (414)
T PRK05077 227 TIDMP---SVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHT 302 (414)
T ss_pred EECCC---CCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccch
Confidence 97665 344332211 00111222357789999988899999999999999999999999998999999999887641
Q ss_pred CC--------CCc---------------c----------c----h----------------------HHHHHHHHHhCCC
Q 005240 640 TL--------TPF---------------G----------F----Q----------------------AERFFDALKGHGA 660 (706)
Q Consensus 640 ~~--------~~~---------------~----------~----~----------------------~~~~~~~l~~~~~ 660 (706)
.. .|. . + + +.+..+.|.....
T Consensus 303 ~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~ 382 (414)
T PRK05077 303 LLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA 382 (414)
T ss_pred hhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC
Confidence 10 000 0 0 0 0034444444444
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 661 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 661 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
..+++++|+. |.+ .....+...+.+||+++|
T Consensus 383 ~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 383 DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 6788889986 333 256788999999999986
No 43
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.53 E-value=9e-13 Score=137.44 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=103.4
Q ss_pred CCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC
Q 005240 476 TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (706)
....++.+...+...||.+|++..+.|++. ..+.|+||++||.+.. ..+ ....++..|++.|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344567777788888999999999988641 1246899999995310 011 1113456688899
Q ss_pred eEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 556 FAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
|.|++.+.+ |+|.+... ....+..++|+.++++++......+..++.|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~~D~r---GhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFALDLE---GHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEEecCC---CCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 999996665 55655321 124567789999999999876444556899999999999999999999999999999
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
.+|.
T Consensus 165 ~~~~ 168 (330)
T PLN02298 165 VAPM 168 (330)
T ss_pred eccc
Confidence 8875
No 44
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.50 E-value=1.2e-13 Score=137.92 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=92.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCccc---CCCCCcCCCCchHHHHHHHC
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR---GSPNEFSGMTPTSSLIFLAR 554 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 554 (706)
...+.|.+.|...++..++++++.|++. ++|.|+||++||.+.......+... .............+..|+++
T Consensus 84 dGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 84 DGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp TTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred CCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4568899999999999999999999873 4579999999986432111111100 00001111123457889999
Q ss_pred CeEEEEcCCCCcCCCCCCCC-----c--------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 555 RFAVLAGPSIPIIGEGDKLP-----N--------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~-----~--------------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
||+|++++..+...++.... . ..+.....-|.+.+++||..++.||++|||++|+||||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999865543221111100 0 1112234567778999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.++++.+ ++++|+|+.+-+
T Consensus 240 a~~LaALD-dRIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAALD-DRIKATVANGYL 259 (390)
T ss_dssp HHHHHHH--TT--EEEEES-B
T ss_pred HHHHHHcc-hhhHhHhhhhhh
Confidence 99999999 788888876543
No 45
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.2e-11 Score=116.56 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=173.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
-+|++.+|++ +.|+...+....+....+.++|+|++++|+ +...++ ..+...-|.+|.+.|+...+-+....+
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY-~v~~~~----~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLY-VVNEPG----EEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEE-EEEecC----CcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4688888876 567777666555555788999999999994 444321 156677888887778877664322210
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...-.++.++||+.|+..... . +.|-+..+
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~-~-----------------------------------------------g~v~v~p~ 118 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYH-S-----------------------------------------------GSVSVYPL 118 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEcc-C-----------------------------------------------ceEEEEEc
Confidence 012356788999987765321 1 12222222
Q ss_pred --CCCceec---CC----------C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC
Q 005240 165 --DGTAKDF---GT----------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (706)
Q Consensus 165 --~g~~~~l---t~----------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 228 (706)
+|.+..+ .. . .......+.|||++|+...... .+|++|+++.++........
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCccccccccc
Confidence 2311111 00 0 2355778999999998776553 48999999866544433322
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---ec------cc
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KL------DL 299 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~------~~ 299 (706)
.. | ..|+|.+.|+|+++. +|.+...++.- .++.++. ..++.++|. .. ..
T Consensus 187 v~---~------G~GPRHi~FHpn~k~-aY~v~EL~stV---------~v~~y~~---~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 187 VK---P------GAGPRHIVFHPNGKY-AYLVNELNSTV---------DVLEYNP---AVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred cC---C------CCCcceEEEcCCCcE-EEEEeccCCEE---------EEEEEcC---CCceEEEeeeeccCccccCCCC
Confidence 21 1 156889999999995 55554433211 2444443 345555442 11 22
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcce
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 379 (706)
....+..++||+.|+.. ++......+|.+|.+++ ....+.-.+.+. ..|.. +.+++.|++|++....
T Consensus 245 ~~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg--~~PR~--F~i~~~g~~Liaa~q~------ 311 (346)
T COG2706 245 WAAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEG--QFPRD--FNINPSGRFLIAANQK------ 311 (346)
T ss_pred ceeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCC--cCCcc--ceeCCCCCEEEEEccC------
Confidence 34456679999977764 45445667888888874 333332112111 12444 4458999998887532
Q ss_pred EEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 380 YILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
++...++++|.+||+...+.
T Consensus 312 ------------sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 312 ------------SDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ------------CCcEEEEEEcCCCceEEecc
Confidence 44557888999999766553
No 46
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.49 E-value=5.3e-11 Score=122.29 Aligned_cols=267 Identities=13% Similarity=0.032 Sum_probs=156.5
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.++.. ++..+.. ........+.|+|||+.++.+. .....|+++|+.+++..+.......
T Consensus 11 ~~v~~~d~~t----~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~---------~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRTF--PVGQRPRGITLSKDGKLLYVCA---------SDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CEEEEEECCC----CceEEEE--ECCCCCCceEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEeccCCCC-
Confidence 4688888866 5543332 2333467799999999875543 2336789999988876543222221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|+|||+.|++... ....|+++|+
T Consensus 75 ----~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~ 102 (300)
T TIGR03866 75 ----PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDI 102 (300)
T ss_pred ----ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEEC
Confidence 456789999998766531 1146778888
Q ss_pred CC-C-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DG-T-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g-~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
.. + ...+........++|+|||+.+++..... ..+..|+..+.+........ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------Q 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------C
Confidence 43 3 22332223456789999999998765432 24666787755443211111 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeec-------ccccccceecCCCceEE
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-------DLRFRSVSWCDDSLALV 314 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~-------~~~~~~~~wspDg~~l~ 314 (706)
.+..+.|+|||+. |++.... .+.++++|+ ++++. +.+... ......+.|+|||+.++
T Consensus 158 ~~~~~~~s~dg~~-l~~~~~~-----------~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVSSEI-----------GGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CccEEEECCCCCE-EEEEcCC-----------CCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 1235789999986 5543211 124778888 44443 333211 11223577999999876
Q ss_pred EEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 394 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 394 (706)
.... ....|.++|+.+. +....... ......+.|+|||++|+.... ..
T Consensus 223 ~~~~---~~~~i~v~d~~~~--~~~~~~~~-------~~~~~~~~~~~~g~~l~~~~~--------------------~~ 270 (300)
T TIGR03866 223 VALG---PANRVAVVDAKTY--EVLDYLLV-------GQRVWQLAFTPDEKYLLTTNG--------------------VS 270 (300)
T ss_pred EEcC---CCCeEEEEECCCC--cEEEEEEe-------CCCcceEEECCCCCEEEEEcC--------------------CC
Confidence 5432 1235888888764 22221110 012234778999999876531 11
Q ss_pred CceeeeecCCCceeeee
Q 005240 395 PFLDLFDINTGSKERIW 411 (706)
Q Consensus 395 ~~l~~~d~~~g~~~~l~ 411 (706)
..|..+|+.+++..+-+
T Consensus 271 ~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSI 287 (300)
T ss_pred CeEEEEECCCCcEEEEE
Confidence 24777888888754433
No 47
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.48 E-value=1.6e-11 Score=123.49 Aligned_cols=292 Identities=17% Similarity=0.137 Sum_probs=148.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..++++.||++ ++++|||..+... .....+||+++.|+|..+ ..+|+.+|+++.+.+.|...+..
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~~-~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGDN-TFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCCC-ccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCcc
Confidence 46899999988 9999999655432 336889999999999752 26899999999999998876654
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~~~~~~~~~~wS--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
-...-.|+ .|++.++..... +... ..+-.+......+.-.....|+.
T Consensus 124 ----~~g~gt~v~n~d~t~~~g~e~~-~~d~--------------------------~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 ----WKGYGTWVANSDCTKLVGIEIS-REDW--------------------------KPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ----EEEEEEEEE-TTSSEEEEEEEE-GGG-------------------------------SHHHHHHHHHC---EEEEE
T ss_pred ----cccccceeeCCCccEEEEEEEe-ehhc--------------------------cCccccHHHHHHHhhCCCceEEE
Confidence 12245775 467766544211 1100 00000001111111124478999
Q ss_pred Ecc-CCCceecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l-~g~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+++ +|+.+.+... .-..-+-+|| |...|+|-... +. .....+||+++.+|+..+.+......+
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG-pw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e------- 238 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG-PW------DLVDQRIWTINTDGSNVKKVHRRMEGE------- 238 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S--T------TTSS-SEEEEETTS---EESS---TTE-------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEeccC-Cc------ceeceEEEEEEcCCCcceeeecCCCCc-------
Confidence 999 6788777655 4455667787 66677775543 32 222468999999999888886543111
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
....--|+|||+. |+|.....++..+. |+.+|+ ++++.+.+...+ ....+.-++||+.++--..
T Consensus 239 ----~~gHEfw~~DG~~-i~y~~~~~~~~~~~-------i~~~d~---~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 ----SVGHEFWVPDGST-IWYDSYTPGGQDFW-------IAGYDP---DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ----EEEEEEE-TTSS--EEEEEEETTT--EE-------EEEE-T---TT--EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred ----ccccccccCCCCE-EEEEeecCCCCceE-------EEeeCC---CCCCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 1123469999998 88776555544432 667777 667666664433 3445666889997764322
Q ss_pred cc------------ccceEEEEEcCCCCCCCceeeecCcccccc----cCCCCCceEeccCCCEEEEeeec
Q 005240 319 YK------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 319 ~~------------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
.. ....-||++++..+ ....|......... ..+.-+.++|||||++|+|.++.
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp ------------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred CCCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 11 01235788888763 44444322211110 01123568899999999999865
No 48
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.48 E-value=1.1e-10 Score=120.03 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=157.1
Q ss_pred ceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 61 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
...|+++|+++++..+....... +..+.|+|||+.++....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~---------------------------------- 50 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCAS---------------------------------- 50 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEEC----------------------------------
Confidence 35888999988876655433222 567899999998765531
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
....|+++++ +++.. .+........+.|+|||+.++++... ...+.+||+.+
T Consensus 51 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 51 --------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred --------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 1156788888 45443 34333345678899999988765432 24799999986
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 298 (706)
.+........ ..+..+.|+|||+. ++... .+ ...++.+|. .+++........
T Consensus 105 ~~~~~~~~~~-------------~~~~~~~~~~dg~~-l~~~~-~~----------~~~~~~~d~---~~~~~~~~~~~~ 156 (300)
T TIGR03866 105 RKVLAEIPVG-------------VEPEGMAVSPDGKI-VVNTS-ET----------TNMAHFIDT---KTYEIVDNVLVD 156 (300)
T ss_pred CeEEeEeeCC-------------CCcceEEECCCCCE-EEEEe-cC----------CCeEEEEeC---CCCeEEEEEEcC
Confidence 5432211110 11236799999986 54332 11 112445566 444332222223
Q ss_pred cccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCC-CCCceEeccCCCEEEEeeeccCCc
Q 005240 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKENDE 377 (706)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~ 377 (706)
.....+.|+|||+.|++.... ...|+++|+.+++ ....+. .......... ....+.++|||+++++....
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~---- 227 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP---- 227 (300)
T ss_pred CCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC----
Confidence 345568899999988765422 2358888888742 112221 1110000000 01136689999987654311
Q ss_pred ceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEE
Q 005240 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (706)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~ 457 (706)
...+..+|+.+++..+...... ....+.|+|||++|+.+.. .-..|.+|
T Consensus 228 ----------------~~~i~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~g~~l~~~~~---~~~~i~v~ 276 (300)
T TIGR03866 228 ----------------ANRVAVVDAKTYEVLDYLLVGQ------------RVWQLAFTPDEKYLLTTNG---VSNDVSVI 276 (300)
T ss_pred ----------------CCeEEEEECCCCcEEEEEEeCC------------CcceEEECCCCCEEEEEcC---CCCeEEEE
Confidence 1136677887776654332111 1224689999997765422 22369999
Q ss_pred ECCCCce-eEee
Q 005240 458 SWPLKKS-SQIT 468 (706)
Q Consensus 458 ~~~~~~~-~~lt 468 (706)
|+.+++. .++.
T Consensus 277 d~~~~~~~~~~~ 288 (300)
T TIGR03866 277 DVAALKVIKSIK 288 (300)
T ss_pred ECCCCcEEEEEE
Confidence 9988775 4443
No 49
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=5.3e-12 Score=122.27 Aligned_cols=283 Identities=16% Similarity=0.181 Sum_probs=157.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+-.++|||||++||.. .|...+.++|+.+..+.....+..+ -+..++|||||++|+..+.
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~----- 177 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSK----- 177 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCcc----EEEEEEECCCcchhhcccc-----
Confidence 57788999999999885 4556777778777665444333322 3778999999999996642
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC-ceEeeeee-----
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEP----- 182 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~-~~~~~~~~----- 182 (706)
.+.|-++|. +| ..+.|... ..+..++|
T Consensus 178 --------------------------------------------dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 178 --------------------------------------------DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred --------------------------------------------CCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 156777776 55 33445544 44555554
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeee--cCCCceEE-
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWR--ADKPSTLY- 258 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s--pdg~~~l~- 258 (706)
.|+.++|+-.+.+ ..+.+||+..+. ++.+..+..+-+ .+..|-..+-+| .|+.-.++
T Consensus 214 ~p~~r~las~skD-------------g~vrIWd~~~~~~~~~lsgHT~~VT------CvrwGG~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 214 VPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTLSGHTASVT------CVRWGGEGLIYSGSQDRTIKVWR 274 (480)
T ss_pred CCCccceecccCC-------------CCEEEEEccCceEEEEeccCccceE------EEEEcCCceEEecCCCceEEEEE
Confidence 5677777654433 378899988554 333333321110 011110011111 11110000
Q ss_pred ---------------EEEecc---------------------------------------CCCCccccCccceeeeecCC
Q 005240 259 ---------------WVEAQD---------------------------------------RGDANVEVSPRDIIYTQPAE 284 (706)
Q Consensus 259 ---------------~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~d~~ 284 (706)
|+...+ .++.-....+...+|+|+.
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p- 353 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP- 353 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc-
Confidence 000000 0000011123346888875
Q ss_pred CCCCC-CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccC
Q 005240 285 PAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST 363 (706)
Q Consensus 285 ~~~~~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~d 363 (706)
.... .+++++.+...+..+.||||+++|+.++-++ ..+|| +..++ +....+.+.+..+|. ++||.|
T Consensus 354 -~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk--SVkLW--~g~tG--k~lasfRGHv~~VYq------vawsaD 420 (480)
T KOG0271|consen 354 -FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK--SVKLW--DGRTG--KFLASFRGHVAAVYQ------VAWSAD 420 (480)
T ss_pred -cccccchhhhhchhhheeeEEECCCccEEEEeeccc--ceeee--eCCCc--chhhhhhhccceeEE------EEeccC
Confidence 2333 2346778888899999999999999876433 34454 44453 333334555555544 889999
Q ss_pred CCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEE
Q 005240 364 GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442 (706)
Q Consensus 364 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~ 442 (706)
.+.|+....+ ..|..+++.+.+...=..+.. +....++|||||.+++
T Consensus 421 sRLlVS~SkD---------------------sTLKvw~V~tkKl~~DLpGh~-----------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 421 SRLLVSGSKD---------------------STLKVWDVRTKKLKQDLPGHA-----------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccEEEEcCCC---------------------ceEEEEEeeeeeecccCCCCC-----------ceEEEEEecCCCceee
Confidence 9887765421 135566665544322111111 1122478999998776
No 50
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=5.4e-11 Score=118.44 Aligned_cols=280 Identities=9% Similarity=0.060 Sum_probs=179.6
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+.+-.++.. ++.|.+- |.+|+|+++. ++..+||..|++|...++=|+... .-.=.-+.||++|
T Consensus 219 eK~vdl~~~--vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtd------YY~R~~nsDGkrI 281 (668)
T COG4946 219 EKFVDLDGN--VSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTD------YYPRNANSDGKRI 281 (668)
T ss_pred eeeeecCCC--cCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchh------ccccccCCCCcEE
Confidence 334445555 7777776 8899998864 788999999999999888876543 1111346799999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC------
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP------ 174 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~------ 174 (706)
+|.. .+.||++|.+. ..+.|.-+
T Consensus 282 vFq~--------------------------------------------------~GdIylydP~td~lekldI~lpl~rk 311 (668)
T COG4946 282 VFQN--------------------------------------------------AGDIYLYDPETDSLEKLDIGLPLDRK 311 (668)
T ss_pred EEec--------------------------------------------------CCcEEEeCCCcCcceeeecCCccccc
Confidence 9862 25677777633 33333211
Q ss_pred ---c----eEeeee-eCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc
Q 005240 175 ---A----VYTAVE-PSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (706)
Q Consensus 175 ---~----~~~~~~-~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~ 245 (706)
. ....+. +|+ +|.+|++++.. +.++.+...+-.-++... .+++
T Consensus 312 ~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------------kaFi~~~~~~~~iqv~~~--------------~~Vr 363 (668)
T COG4946 312 KKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------------KAFIMRPWDGYSIQVGKK--------------GGVR 363 (668)
T ss_pred cccccccCHHHhhhhhccCCCcEEEEEecC--------------cEEEECCCCCeeEEcCCC--------------CceE
Confidence 0 000111 343 88999988865 456666555444443222 2233
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceE
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (706)
.-.++-|+.. ++.- ... .+.|-+.|. ++++++++...-+.+..+..++||+.++.+. ....
T Consensus 364 Y~r~~~~~e~-~vig--t~d---------gD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----dr~e 424 (668)
T COG4946 364 YRRIQVDPEG-DVIG--TND---------GDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----DRFE 424 (668)
T ss_pred EEEEccCCcc-eEEe--ccC---------CceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----CceE
Confidence 3345555554 3211 122 234777888 7899999988889999999999999888753 3457
Q ss_pred EEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCC
Q 005240 326 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (706)
Q Consensus 326 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g 405 (706)
||.+|++++ +++.+ +.+-... ...+.|+|++++|++.--. . .| ...+.++|.+++
T Consensus 425 l~vididng--nv~~i-dkS~~~l-----Itdf~~~~nsr~iAYafP~-----g-y~-----------tq~Iklydm~~~ 479 (668)
T COG4946 425 LWVIDIDNG--NVRLI-DKSEYGL-----ITDFDWHPNSRWIAYAFPE-----G-YY-----------TQSIKLYDMDGG 479 (668)
T ss_pred EEEEEecCC--CeeEe-cccccce-----eEEEEEcCCceeEEEecCc-----c-ee-----------eeeEEEEecCCC
Confidence 999999994 44544 3322211 2247899999999987411 1 11 125778999998
Q ss_pred ceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCc
Q 005240 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (706)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~ 452 (706)
+.-.++.... -+..++|.|||++|.|...+.-.|.
T Consensus 480 Kiy~vTT~ta------------~DfsPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 480 KIYDVTTPTA------------YDFSPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred eEEEecCCcc------------cccCcccCCCCcEEEEEeccccCCC
Confidence 8877764432 2336899999999999877666554
No 51
>PRK13604 luxD acyl transferase; Provisional
Probab=99.44 E-value=4e-12 Score=125.83 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=90.8
Q ss_pred EEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC
Q 005240 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (706)
Q Consensus 485 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (706)
-.+.+.||..|.||+..|++-+ ..|.|+||++||=. .. . .....++..|+++||+|+.-+.+
T Consensus 12 ~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~-----------~~-~---~~~~~~A~~La~~G~~vLrfD~r 73 (307)
T PRK13604 12 HVICLENGQSIRVWETLPKENS---PKKNNTILIASGFA-----------RR-M---DHFAGLAEYLSSNGFHVIRYDSL 73 (307)
T ss_pred heEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCC-----------CC-h---HHHHHHHHHHHHCCCEEEEecCC
Confidence 3456679999999999997522 22468999999831 11 0 11335678899999999996654
Q ss_pred CcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 565 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 565 ~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+..| ++... .........|+.++++|++++ +..+|+++||||||..++.++... .++++|+.+|..+
T Consensus 74 g~~G--eS~G~~~~~t~s~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~ 142 (307)
T PRK13604 74 HHVG--LSSGTIDEFTMSIGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVN 142 (307)
T ss_pred CCCC--CCCCccccCcccccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCccc
Confidence 4322 22111 111122368999999999886 346899999999999987666644 4899999999877
No 52
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.44 E-value=1.1e-11 Score=130.22 Aligned_cols=133 Identities=13% Similarity=0.043 Sum_probs=96.6
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC-chHHHHHHHCCeEEEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA 560 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~ 560 (706)
.++....+.||.+|.+..+.|++- .+.|+||++||.+.. .... ...+..|++.||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~-----~~~~~iv~lHG~~~~---------------~~~~~~~~~~~l~~~g~~v~~ 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS-----RPKAAVCFCHGYGDT---------------CTFFFEGIARKIASSGYGVFA 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC-----CCCeEEEEECCCCCc---------------cchHHHHHHHHHHhCCCEEEE
Confidence 444555567999999999999741 235899999995311 0111 1345677889999999
Q ss_pred cCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+.+ |+|.+... .......++|+.+.++++..+...++.++.++||||||.+++.++.++|++++++|+.+|..
T Consensus 121 ~D~~---G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~ 197 (349)
T PLN02385 121 MDYP---GFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMC 197 (349)
T ss_pred ecCC---CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccc
Confidence 6665 55555332 12346678888888888866544456789999999999999999999999999999988753
No 53
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.41 E-value=5.1e-12 Score=130.41 Aligned_cols=183 Identities=18% Similarity=0.170 Sum_probs=128.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
...+..++..+|.|.. ....+.|+|||+|||++.. ++.... .......++..|+.|+.++|+-...
T Consensus 58 ~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~--------g~~~~~---~~~~~~~~~~~g~~vv~vdYrlaPe 123 (312)
T COG0657 58 GPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVL--------GSLRTH---DALVARLAAAAGAVVVSVDYRLAPE 123 (312)
T ss_pred CCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeee--------cChhhh---HHHHHHHHHHcCCEEEecCCCCCCC
Confidence 3455568899999922 1123479999999997642 221111 1233455567999999999974433
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccCCCCCCC
Q 005240 569 EGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTL 641 (706)
Q Consensus 569 ~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~~~d~~~ 641 (706)
+ .+...+.|+.+++.|+.++. -+|+++|+|+|+|.||+|++.++..-.+ ..++.+...|..|...
T Consensus 124 ~--------~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 124 H--------PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred C--------CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 2 12345778889999999763 3899999999999999999999866533 5688888888876442
Q ss_pred -CC--------------------------------------cc---------------------chHHHHHHHHHhCCCc
Q 005240 642 -TP--------------------------------------FG---------------------FQAERFFDALKGHGAL 661 (706)
Q Consensus 642 -~~--------------------------------------~~---------------------~~~~~~~~~l~~~~~~ 661 (706)
.+ .. -+.+.+.++|++.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~ 275 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSGLPPTLIQTAEFDPLRDEGEAYAERLRAAGVP 275 (312)
T ss_pred cccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHcCCe
Confidence 00 00 0223999999999999
Q ss_pred EEEEEeCCCCccCCC--cccHHHHHHHHHHHHHH
Q 005240 662 SRLVLLPFEHHVYAA--RENVMHVIWETDRWLQK 693 (706)
Q Consensus 662 ~~~~~~~~~~H~~~~--~~~~~~~~~~~~~f~~~ 693 (706)
+++..||+..|.|.. .......+..+.+||++
T Consensus 276 ~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 276 VELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999999999843 22344556777777774
No 54
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.40 E-value=1.7e-11 Score=123.65 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=137.4
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~ 557 (706)
.+....+.+... ..++..||+|..-.+. .+.|+|||+|||++..++... ..+..+...++ +.+.+
T Consensus 60 ~v~~~dv~~~~~--~~l~vRly~P~~~~~~--~~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~v 125 (336)
T KOG1515|consen 60 GVTSKDVTIDPF--TNLPVRLYRPTSSSSE--TKLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCV 125 (336)
T ss_pred CceeeeeEecCC--CCeEEEEEcCCCCCcc--cCceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeE
Confidence 344556666643 4689999999875441 248999999999876432211 12234555665 58999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEechHHHHHHHHHHhC------CCce
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLF 627 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~----~~id~~~i~i~G~S~GG~~a~~~~~~~------p~~~ 627 (706)
|+.++||-.. +.. ....++|...|+.|+.++ ..+|++||+|+|.|.||.+|..++.+. +-.+
T Consensus 126 vvSVdYRLAP----Eh~----~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki 197 (336)
T KOG1515|consen 126 VVSVDYRLAP----EHP----FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKI 197 (336)
T ss_pred EEecCcccCC----CCC----CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcce
Confidence 9999987332 212 233478888999999885 448999999999999999999988553 3578
Q ss_pred eEEEeccCCCCCCC----------------------------CC-------------cc-c-------------------
Q 005240 628 CCGIARSGSYNKTL----------------------------TP-------------FG-F------------------- 646 (706)
Q Consensus 628 ~a~v~~~~~~d~~~----------------------------~~-------------~~-~------------------- 646 (706)
++.|+..|.+.... .| .. .
T Consensus 198 ~g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag 277 (336)
T KOG1515|consen 198 KGQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAG 277 (336)
T ss_pred EEEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeC
Confidence 99999999864221 01 00 0
Q ss_pred ------hHHHHHHHHHhCCCcEEEEEeCCCCccCCC--c--ccHHHHHHHHHHHHHHH
Q 005240 647 ------QAERFFDALKGHGALSRLVLLPFEHHVYAA--R--ENVMHVIWETDRWLQKY 694 (706)
Q Consensus 647 ------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~--~--~~~~~~~~~~~~f~~~~ 694 (706)
+...+.++|++.|++++++.++++.|.|.. + ........++.+|+++.
T Consensus 278 ~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 278 YDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred chhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 111899999999999999999999998852 2 24567888888888764
No 55
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=2.3e-12 Score=120.37 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=105.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+++=.++|++.+|..|.||+++|..- ++++|+||..||= ...++ .+.-...|+..||+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY----------~g~~g------~~~~~l~wa~~Gya 111 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGY----------GGRGG------EWHDMLHWAVAGYA 111 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeec----------cCCCC------Ccccccccccccee
Confidence 4467888999999999999999999861 2469999999972 11111 11123457889999
Q ss_pred EEEcCCCCcCCCCC---------CCC-----------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 558 VLAGPSIPIIGEGD---------KLP-----------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 558 v~~~~~~~~~g~g~---------~~~-----------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
|+.++.||-.+..+ ... ..-++...+.|+..+++-+.....+|+.||++.|+|.||.+++
T Consensus 112 vf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglal 191 (321)
T COG3458 112 VFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLAL 191 (321)
T ss_pred EEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhh
Confidence 99866665443311 000 0112345689999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCC
Q 005240 618 HLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+++.. .+++++++..|...
T Consensus 192 aaaal~-~rik~~~~~~Pfl~ 211 (321)
T COG3458 192 AAAALD-PRIKAVVADYPFLS 211 (321)
T ss_pred hhhhcC-hhhhcccccccccc
Confidence 999999 69999999999754
No 56
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.39 E-value=2.2e-11 Score=116.86 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=102.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCC-CCchHHHHHHHCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~ 557 (706)
.+....-.+.+.+|..+....+.|..-+ .|..+|+++||-+. ... .+...+..|++.||.
T Consensus 24 ~~~~~~~~~~n~rG~~lft~~W~p~~~~----~pr~lv~~~HG~g~---------------~~s~~~~~~a~~l~~~g~~ 84 (313)
T KOG1455|consen 24 GVTYSESFFTNPRGAKLFTQSWLPLSGT----EPRGLVFLCHGYGE---------------HSSWRYQSTAKRLAKSGFA 84 (313)
T ss_pred ccceeeeeEEcCCCCEeEEEecccCCCC----CCceEEEEEcCCcc---------------cchhhHHHHHHHHHhCCCe
Confidence 3455666677789999999999996521 24678999998531 111 122467889999999
Q ss_pred EEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 558 VLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
|+..+.. |+|.+... -...+..++|+..-++.+..+.---.....++|+||||.+++.++.+.|+.+.++|..+
T Consensus 85 v~a~D~~---GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilva 161 (313)
T KOG1455|consen 85 VYAIDYE---GHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVA 161 (313)
T ss_pred EEEeecc---CCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeee
Confidence 9995554 56666443 23456778999998888777643333589999999999999999999999999999999
Q ss_pred CCCC
Q 005240 635 GSYN 638 (706)
Q Consensus 635 ~~~d 638 (706)
|++-
T Consensus 162 Pmc~ 165 (313)
T KOG1455|consen 162 PMCK 165 (313)
T ss_pred cccc
Confidence 9753
No 57
>PHA02857 monoglyceride lipase; Provisional
Probab=99.38 E-value=3.9e-11 Score=121.81 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=90.5
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+.||..+++.+|.|.+ . +.|+|+++||.+.. .......+..|++.||.|++.+.+ |
T Consensus 7 ~~~g~~l~~~~~~~~~---~---~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via~D~~---G 62 (276)
T PHA02857 7 NLDNDYIYCKYWKPIT---Y---PKALVFISHGAGEH---------------SGRYEELAENISSLGILVFSHDHI---G 62 (276)
T ss_pred cCCCCEEEEEeccCCC---C---CCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEEccCC---C
Confidence 3499999999998852 1 35899999995311 111224567788899999996555 4
Q ss_pred CCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 569 EGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 569 ~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+|.+... .......++|+..+++++.+.. ...++.++|||+||.+++.++.++|++++++|+.+|..+
T Consensus 63 ~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 63 HGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred CCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 5554322 1233456788888888876542 236799999999999999999999999999999998643
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.8e-10 Score=120.32 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=161.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|++.+++. ..|+...+.........+.+.+|||+++|+.+... ....+....|.++.++|+.+.+......
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~----~~~~g~v~~~~i~~~~g~L~~~~~~~~~- 85 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG----SGDSGGVSSYRIDPDTGTLTLLNSVPSG- 85 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETT----SSTTTEEEEEEEETTTTEEEEEEEEEES-
T ss_pred CcEEEEEEcC--CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcc----ccCCCCEEEEEECCCcceeEEeeeeccC-
Confidence 4788888855 66877777655566678889999999988554321 0124555667777666777666432211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
....-.+..+|||++|+..-. ..+.+.++++
T Consensus 86 -g~~p~~i~~~~~g~~l~vany------------------------------------------------~~g~v~v~~l 116 (345)
T PF10282_consen 86 -GSSPCHIAVDPDGRFLYVANY------------------------------------------------GGGSVSVFPL 116 (345)
T ss_dssp -SSCEEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEE
T ss_pred -CCCcEEEEEecCCCEEEEEEc------------------------------------------------cCCeEEEEEc
Confidence 111345678899998877532 1134544444
Q ss_pred --CCCceec---C------------CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcc
Q 005240 165 --DGTAKDF---G------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (706)
Q Consensus 165 --~g~~~~l---t------------~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~ 225 (706)
+|.+... . .......+.++|||++|+..... ...|++|+++... +....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEee
Confidence 3422211 1 11456789999999999766543 2478888887443 33311
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee---cc----
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD---- 298 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~---- 298 (706)
..... ...|++.+.|+|||+. +|.+...+ ..|.+++.++ ..+..+.+.. .+
T Consensus 185 ~~~~~---------~G~GPRh~~f~pdg~~-~Yv~~e~s-----------~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIKVP---------PGSGPRHLAFSPDGKY-AYVVNELS-----------NTVSVFDYDP-SDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEECS---------TTSSEEEEEE-TTSSE-EEEEETTT-----------TEEEEEEEET-TTTEEEEEEEEESCETTSC
T ss_pred ccccc---------cCCCCcEEEEcCCcCE-EEEecCCC-----------CcEEEEeecc-cCCceeEEEEeeecccccc
Confidence 11110 0146789999999996 66553222 1244444410 2444433221 11
Q ss_pred --cccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCC
Q 005240 299 --LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (706)
Q Consensus 299 --~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 376 (706)
.....+..+|||+.|+.. ++......+|.+|.++ ++.+.+...... ...| ..+.++|||++|++....
T Consensus 243 ~~~~~~~i~ispdg~~lyvs-nr~~~sI~vf~~d~~~--g~l~~~~~~~~~--G~~P--r~~~~s~~g~~l~Va~~~--- 312 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVS-NRGSNSISVFDLDPAT--GTLTLVQTVPTG--GKFP--RHFAFSPDGRYLYVANQD--- 312 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEE-ECTTTEEEEEEECTTT--TTEEEEEEEEES--SSSE--EEEEE-TTSSEEEEEETT---
T ss_pred ccCCceeEEEecCCCEEEEE-eccCCEEEEEEEecCC--CceEEEEEEeCC--CCCc--cEEEEeCCCCEEEEEecC---
Confidence 134567899999988875 3444455566666555 344443211110 0011 136679999999887532
Q ss_pred cceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
.+...++.+|.++|..+.+
T Consensus 313 ---------------s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 313 ---------------SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ---------------TTEEEEEEEETTTTEEEEE
T ss_pred ---------------CCeEEEEEEeCCCCcEEEe
Confidence 2334567788888876554
No 59
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.35 E-value=4e-12 Score=119.90 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=116.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH--HCCeEEEEcCCCCcCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL--ARRFAVLAGPSIPIIG 568 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~G~~v~~~~~~~~~g 568 (706)
-|.++...+|.|++++++++. +|+||+.||+++.+....-.+..+.. +..++ +.+|.|++|.+..-..
T Consensus 170 tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~g---------aiawa~pedqcfVlAPQy~~if~ 239 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGIG---------AIAWAGPEDQCFVLAPQYNPIFA 239 (387)
T ss_pred cCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCcc---------ceeeecccCceEEEccccccccc
Confidence 578999999999999988752 49999999987654222222211111 11112 2446777755422111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------
Q 005240 569 EGDKLPNDRFVEQLVSSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------ 641 (706)
Q Consensus 569 ~g~~~~~~~~~~~~~~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------ 641 (706)
-.++ --.......+.+++ -|.++..||.+||.++|.|+||++++.++.++|+.|+|++.++|-.|...
T Consensus 240 d~e~-----~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~lv~~lk 314 (387)
T COG4099 240 DSEE-----KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYLVRTLK 314 (387)
T ss_pred cccc-----ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhhhhhhc
Confidence 1111 11122333445555 55667779999999999999999999999999999999999999887321
Q ss_pred -CCcc-ch-----------HHHHHHHHHhCCCcEEEEEeC---CCCccCCCcccH--HHHHHHHHHHHHH
Q 005240 642 -TPFG-FQ-----------AERFFDALKGHGALSRLVLLP---FEHHVYAARENV--MHVIWETDRWLQK 693 (706)
Q Consensus 642 -~~~~-~~-----------~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~~~~~--~~~~~~~~~f~~~ 693 (706)
.|.+ +. +.-++..|+...+++.+..|. -..|++.....+ ..-..++.+||-+
T Consensus 315 ~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 315 KAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred cCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhccccccccCCCCcceeecCCHHHHHHHHh
Confidence 2221 11 116677888887777777665 223443322222 2233456777654
No 60
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.34 E-value=5.7e-12 Score=122.02 Aligned_cols=125 Identities=20% Similarity=0.173 Sum_probs=88.2
Q ss_pred EEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC--C
Q 005240 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--P 574 (706)
Q Consensus 497 ~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~--~ 574 (706)
+++|.|+++. +++|+||++||++... ..+. ....+...+.+.||+|+.++.++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~-----------~~~~-~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTA-----------SAYV-IDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCH-----------HHHh-hhcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 4789998752 2479999999986321 0010 0011344445689999998887654322111 1
Q ss_pred ch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 575 ND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 575 ~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.. ........|+..+++++.++..+|++||+|+|+|+||++++.++.++|++|+++++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 11 0112346778889999988877999999999999999999999999999999999988754
No 61
>PRK10749 lysophospholipase L2; Provisional
Probab=99.34 E-value=6.6e-11 Score=123.06 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=93.4
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+...+...||..+....+.|+. +.|+||++||-.. ........+..|++.||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE
Confidence 456677777799999999887742 1367899999421 111112345567889999999
Q ss_pred cCCCCcCCCCCCCCc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 561 GPSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
.+.+ |+|.+... .......++|+.++++.+.+. .+..++.++||||||.+++.++.++|++++++|+
T Consensus 87 ~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl 161 (330)
T PRK10749 87 IDHR---GQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIAL 161 (330)
T ss_pred EcCC---CCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEE
Confidence 6665 44544221 123567788888888877654 2447899999999999999999999999999999
Q ss_pred ccCCC
Q 005240 633 RSGSY 637 (706)
Q Consensus 633 ~~~~~ 637 (706)
.+|..
T Consensus 162 ~~p~~ 166 (330)
T PRK10749 162 CAPMF 166 (330)
T ss_pred ECchh
Confidence 98753
No 62
>PRK11460 putative hydrolase; Provisional
Probab=99.34 E-value=4.7e-11 Score=116.88 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC------CCCcc---------
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------LTPFG--------- 645 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------~~~~~--------- 645 (706)
.....+.+.++++.++..++++||+++|+|+||.+++.++.+.|+.+.++++++|.+... ..|..
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~~~~~~~~~pvli~hG~~D~v 161 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASLPETAPTATTIHLIHGGEDPV 161 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccccccccccCCCcEEEEecCCCCc
Confidence 345566677777777766889999999999999999999999999889888888764311 11111
Q ss_pred ---chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 ---FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 ---~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
...++++++|++.+.++++++||+++|.+.. +..+.+.+||.++|.+
T Consensus 162 vp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l~~ 211 (232)
T PRK11460 162 IDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTVPK 211 (232)
T ss_pred cCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHcch
Confidence 1234899999999999999999999999863 6778888888887743
No 63
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=1.2e-09 Score=113.87 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=141.3
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-CCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~ 82 (706)
..+|++.+++.+ |+.+.+..++.+.......+||||++|+.... ....|.+++.+ .|+...+.....
T Consensus 11 ~~~I~~~~~~~~---g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 11 SQQIHVWNLNHE---GALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred CCCEEEEEECCC---CceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecC
Confidence 457899999642 55555555555555778899999999855432 22455555544 454433321111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
...+..+.++|||++|+..... .+.|.++
T Consensus 79 ---~~~p~~i~~~~~g~~l~v~~~~------------------------------------------------~~~v~v~ 107 (330)
T PRK11028 79 ---PGSPTHISTDHQGRFLFSASYN------------------------------------------------ANCVSVS 107 (330)
T ss_pred ---CCCceEEEECCCCCEEEEEEcC------------------------------------------------CCeEEEE
Confidence 1124578899999988766321 1455555
Q ss_pred cc--CCCc-eec--CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCc
Q 005240 163 SL--DGTA-KDF--GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPV 235 (706)
Q Consensus 163 ~l--~g~~-~~l--t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~ 235 (706)
++ +|.. +.+ ... .....++++|||++|++.... ...|.+|+++. +.......... ..+
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~- 172 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV- 172 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC-
Confidence 55 3421 111 112 345667899999999766544 24799999975 32211100000 000
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---cc------cccccee
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DL------RFRSVSW 306 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~------~~~~~~w 306 (706)
...+++.+.|+|||+. ||.. +.. .+.|.++++++ .+++.+.+... +. ....+.+
T Consensus 173 ----~g~~p~~~~~~pdg~~-lyv~-~~~----------~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 173 ----EGAGPRHMVFHPNQQY-AYCV-NEL----------NSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred ----CCCCCceEEECCCCCE-EEEE-ecC----------CCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 0133567899999996 5544 221 12466666621 23343322111 11 1123678
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+|||++++.. +.......+|.++.++ ...+.+-..... ..|. .+.++|||++|+...
T Consensus 236 ~pdg~~lyv~-~~~~~~I~v~~i~~~~--~~~~~~~~~~~~---~~p~--~~~~~~dg~~l~va~ 292 (330)
T PRK11028 236 TPDGRHLYAC-DRTASLISVFSVSEDG--SVLSFEGHQPTE---TQPR--GFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCCEEEEe-cCCCCeEEEEEEeCCC--CeEEEeEEEecc---ccCC--ceEECCCCCEEEEEE
Confidence 9999988875 3333344455554443 222222110101 1222 367899999998865
No 64
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.33 E-value=1.3e-10 Score=122.56 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=114.0
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC---
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--- 555 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--- 555 (706)
...+.+++.+. -|.+...++|+|++++ .+ ++|+|+++||..+. ... ........|.+.|
T Consensus 178 g~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~-------------~~~-~~~~~ld~li~~g~i~ 240 (411)
T PRK10439 178 SPAKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWA-------------ESM-PVWPALDSLTHRGQLP 240 (411)
T ss_pred CceEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhh-------------hcC-CHHHHHHHHHHcCCCC
Confidence 34566777764 5778999999999886 22 59999999996431 110 0112344566677
Q ss_pred -eEEEEcCCCCcCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 556 -FAVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 556 -~~v~~~~~~~~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
++|++++..+...+..+.. ...+...+.++++. ++.++.. .|+++.+|+|+||||+.|++++.++|++|.+++
T Consensus 241 P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP---~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~ 317 (411)
T PRK10439 241 PAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLP---QVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVL 317 (411)
T ss_pred ceEEEEECCCCcccccccCCchHHHHHHHHHHHHH---HHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEE
Confidence 3445544422211222222 22333334444444 4444422 588999999999999999999999999999999
Q ss_pred eccCCCCCCC------------------C--C-c-----c-c------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 632 ARSGSYNKTL------------------T--P-F-----G-F------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 632 ~~~~~~d~~~------------------~--~-~-----~-~------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
+++|.+-+.. . + . + . ...+|.+.|+++|+++.+.+|+| +|.+.
T Consensus 318 s~Sgs~ww~~~~~~~~~~l~~~l~~~~~~~~~lr~~i~~G~~E~~~~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~~ 393 (411)
T PRK10439 318 SQSGSFWWPHRGGQQEGVLLEQLKAGEVSARGLRIVLEAGRREPMIMRANQALYAQLHPAGHSVFWRQVDG-GHDAL 393 (411)
T ss_pred EeccceecCCccCCchhHHHHHHHhcccCCCCceEEEeCCCCCchHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHH
Confidence 9998752210 0 0 0 0 0 12389999999999999999998 69654
No 65
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.30 E-value=1.7e-11 Score=110.35 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=138.4
Q ss_pred CCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-H
Q 005240 471 PHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-L 549 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 549 (706)
+.+.|..-.++.|.+++++.|.+++++|+++-+. . .|+++|+|+. +++. ..+...+ -
T Consensus 43 ~vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~----S---~pTlLyfh~N-----------AGNm----Ghr~~i~~~ 100 (300)
T KOG4391|consen 43 NVPTPKEFNMPYERIELRTRDKVTLDAYLMLSES----S---RPTLLYFHAN-----------AGNM----GHRLPIARV 100 (300)
T ss_pred CCCCccccCCCceEEEEEcCcceeEeeeeecccC----C---CceEEEEccC-----------CCcc----cchhhHHHH
Confidence 3445666678899999999999999999998332 2 6999999985 1111 1111122 2
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.+.++.|+...+| |||.+.... .-+...-|..++++||..++..|+.+|.++|.|.||..|+.+++.+.+++.|
T Consensus 101 fy~~l~mnv~ivsYR---GYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 101 FYVNLKMNVLIVSYR---GYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred HHHHcCceEEEEEee---ccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 456799999996666 677664432 2344567888999999999999999999999999999999999999889999
Q ss_pred EEeccCCCCCC-C--------------------------------CCccch------------HHHHHHHHHhCCCcEEE
Q 005240 630 GIARSGSYNKT-L--------------------------------TPFGFQ------------AERFFDALKGHGALSRL 664 (706)
Q Consensus 630 ~v~~~~~~d~~-~--------------------------------~~~~~~------------~~~~~~~l~~~~~~~~~ 664 (706)
++.-.-...-. . +|..+- ..+++..+-.. ..++
T Consensus 177 ~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl 254 (300)
T KOG4391|consen 177 IIVENTFLSIPHMAIPLVFPFPMKYIPLLCYKNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRL 254 (300)
T ss_pred eeeechhccchhhhhheeccchhhHHHHHHHHhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhh
Confidence 98876543210 0 011110 01444444333 3478
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 665 ~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
..||+..|.-+.- .+-.++.|.+|+.+.-+.
T Consensus 255 ~eFP~gtHNDT~i--~dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 255 AEFPDGTHNDTWI--CDGYFQAIEDFLAEVVKS 285 (300)
T ss_pred eeCCCCccCceEE--eccHHHHHHHHHHHhccC
Confidence 9999999976532 234688899999996553
No 66
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.30 E-value=6e-11 Score=108.02 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVE 591 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~ 591 (706)
-+||++|| ..+++.. ...+...|...||.|.+|++. |+|..-. -....++...|+.++.+
T Consensus 16 ~AVLllHG-----------FTGt~~D----vr~Lgr~L~e~GyTv~aP~yp---GHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHG-----------FTGTPRD----VRMLGRYLNENGYTVYAPRYP---GHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEec-----------cCCCcHH----HHHHHHHHHHCCceEecCCCC---CCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 57888998 2332221 234567788899999998886 4443311 11234566888999999
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----CCc----------------------
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----TPF---------------------- 644 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----~~~---------------------- 644 (706)
+|.+.++ +.|+|.|.||||-+|+.++.+.| .+..|.+|+..+... .+.
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998877 78999999999999999999997 677777766544211 000
Q ss_pred -cch-------------------------------------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 645 -GFQ-------------------------------------------AERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 645 -~~~-------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
.+. +.-+++.... .+.++.+|++.+|.++....+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Er 230 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKER 230 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhH
Confidence 000 0034444433 356999999999999998889
Q ss_pred HHHHHHHHHHHH
Q 005240 681 MHVIWETDRWLQ 692 (706)
Q Consensus 681 ~~~~~~~~~f~~ 692 (706)
.++.+.++.||+
T Consensus 231 d~v~e~V~~FL~ 242 (243)
T COG1647 231 DQVEEDVITFLE 242 (243)
T ss_pred HHHHHHHHHHhh
Confidence 999999999996
No 67
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.28 E-value=1.7e-10 Score=113.93 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=92.6
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
.+.+++..| .+.++++.|++ ..+.|+||++||-+. ............+..|+++||.|+..+.
T Consensus 2 ~~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~-----------~~~~~~~~~~~la~~La~~Gy~Vl~~Dl 64 (266)
T TIGR03101 2 PFFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAE-----------EMNKSRRMVALQARAFAAGGFGVLQIDL 64 (266)
T ss_pred CEEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcc-----------cccchhHHHHHHHHHHHHCCCEEEEECC
Confidence 355666555 57788887865 124689999998421 0000100011235678889999999777
Q ss_pred CCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 564 IPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 564 ~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+ |+|.+.. .........+|+..+++++.+++ ..+|.++|+||||.+++.++.++|+.++++|..+|+..
T Consensus 65 ~---G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 65 Y---GCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred C---CCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 6 4454422 12234566899999999998764 46899999999999999999999999999999998754
No 68
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.28 E-value=3.4e-10 Score=114.24 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=91.4
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+.+.. +|..+.|+++.|.+- . .|.||++|||+.. ..++.. .....+..|+++||.|+.++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~--~----~~~vv~i~gg~~~--------~~g~~~---~~~~la~~l~~~G~~v~~~D 64 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS--H----TTGVLIVVGGPQY--------RVGSHR---QFVLLARRLAEAGFPVLRFD 64 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC--C----CCeEEEEeCCccc--------cCCchh---HHHHHHHHHHHCCCEEEEeC
Confidence 4577775 678999999999751 1 2456666776421 111111 11245677889999999966
Q ss_pred CCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 563 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 563 ~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+ |+|.+............|+.++++++.++.. .-++|.++|+|+||.+++.++.+. .+++++|+.+|.+
T Consensus 65 l~---G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~ 134 (274)
T TIGR03100 65 YR---GMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWV 134 (274)
T ss_pred CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCcc
Confidence 65 5665533322345678899999999987521 236799999999999999987765 7899999998864
No 69
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.27 E-value=5.6e-11 Score=121.27 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=86.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHHHCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~G~~ 557 (706)
....+.+.++-. |..|+|++..|+. .+|+|+||++-|- ++ .....+... ..|+.+|++
T Consensus 162 ~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGl------------Ds---~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGL------------DS---LQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--T------------TS----GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCc------------ch---hHHHHHHHHHHHHHhCCCE
Confidence 346788888864 5899999999984 3479988876441 11 211112222 346789999
Q ss_pred EEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 558 VLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++..+. ++.|+...+.- .+. ... ..++++||...+.||.+||+++|.|+||+.|..++...+++++|+|+..|+
T Consensus 221 ~LtvDm-PG~G~s~~~~l~~D~-~~l---~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 221 MLTVDM-PGQGESPKWPLTQDS-SRL---HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EEEE---TTSGGGTTT-S-S-C-CHH---HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EEEEcc-CCCcccccCCCCcCH-HHH---HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCch
Confidence 987443 33343222221 111 111 236799999999999999999999999999999998777899999999987
Q ss_pred CCCC
Q 005240 637 YNKT 640 (706)
Q Consensus 637 ~d~~ 640 (706)
....
T Consensus 296 vh~~ 299 (411)
T PF06500_consen 296 VHHF 299 (411)
T ss_dssp -SCG
T ss_pred Hhhh
Confidence 5543
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.27 E-value=4e-09 Score=106.53 Aligned_cols=264 Identities=15% Similarity=0.122 Sum_probs=156.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+.|+|||+.|++... ...+.+++..+++... +..... .+..+.|+|+++.|++...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~---- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSS---- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcC----
Confidence 5888999999999988642 3567777777664333 322222 1457899999988777632
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.|+++++.. ....+... ..+..+.|+|+++
T Consensus 72 ---------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 72 ---------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred ---------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 15777888843 44444444 4788999999977
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
.|+..... ..+.+|++...+.. .+.... .....+.|+|+++. |+ ...
T Consensus 107 ~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~-l~-~~~---- 154 (289)
T cd00200 107 ILSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTF-VA-SSS---- 154 (289)
T ss_pred EEEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCE-EE-EEc----
Confidence 66544422 37999999844433 332111 12447899999663 33 321
Q ss_pred CCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
..+.++++|+ ..++. ..+......+..+.|+|+++.|++... ...|.++|+.++ +....+...
T Consensus 155 -------~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~~~~~~~~ 218 (289)
T cd00200 155 -------QDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTG--KCLGTLRGH 218 (289)
T ss_pred -------CCCcEEEEEc---cccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCC--ceecchhhc
Confidence 1124778887 43443 334444557889999999988887653 234677777653 222222111
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhh
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 425 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 425 (706)
.. ....+.|++++..++.... ...+..+++.+++.........
T Consensus 219 ~~------~i~~~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~~~~---------- 261 (289)
T cd00200 219 EN------GVNSVAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLSGHT---------- 261 (289)
T ss_pred CC------ceEEEEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEccccC----------
Confidence 00 1223667888666554421 1135566766555433332211
Q ss_pred ccCCCceecccCCCEEEEEE
Q 005240 426 VFGQGEEDINLNQLKILTSK 445 (706)
Q Consensus 426 ~~~~~~~~~s~Dg~~l~~~~ 445 (706)
.....+.|+++++.++...
T Consensus 262 -~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 262 -NSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred -CcEEEEEECCCCCEEEEec
Confidence 1123468999987766543
No 71
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.27 E-value=2.1e-11 Score=115.85 Aligned_cols=126 Identities=25% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcC--CCCCC
Q 005240 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPII--GEGDK 572 (706)
Q Consensus 496 ~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~--g~g~~ 572 (706)
...||.|+.... ++.|+||++||+.... ..+.. ......+++ .||+|+.|...... .....
T Consensus 2 ~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a-----------~~~~~--~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~ 65 (220)
T PF10503_consen 2 SYRLYVPPGAPR---GPVPLVVVLHGCGQSA-----------EDFAA--GSGWNALADREGFIVVYPEQSRRANPQGCWN 65 (220)
T ss_pred cEEEecCCCCCC---CCCCEEEEeCCCCCCH-----------HHHHh--hcCHHHHhhcCCeEEEcccccccCCCCCccc
Confidence 467999997532 3589999999985321 11110 011234564 89999986543211 11111
Q ss_pred CCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 573 LPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.. ..........+...++++.++..||++||.++|+|.||+|+..+++.+|++|+|+..++|..
T Consensus 66 w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 66 WFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred ccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 111 11112335567788899988888999999999999999999999999999999999998863
No 72
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.27 E-value=2.7e-11 Score=134.50 Aligned_cols=131 Identities=20% Similarity=0.307 Sum_probs=97.2
Q ss_pred EccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcC
Q 005240 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (706)
Q Consensus 488 ~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (706)
+..||.+|.+.+++|.+ .+++|+||++||-.... .. ........++.|+++||+|+..+.+|
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~----~~-------~~~~~~~~~~~l~~~Gy~vv~~D~RG-- 63 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDA----GL-------RWGLDKTEPAWFVAQGYAVVIQDTRG-- 63 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCch----hh-------ccccccccHHHHHhCCcEEEEEeccc--
Confidence 45699999999999975 22589999999742110 00 00011224567899999999977764
Q ss_pred CCCCCCCchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 568 GEGDKLPNDRFV-EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~~~~~~~-~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+|.+....... ....+|+.++++|+.++++.+ .||+++|+||||++++.++.+.|+.++|++..++..+
T Consensus 64 -~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 64 -RGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred -cccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 44443322222 567899999999999998776 6999999999999999999999999999999887754
No 73
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=110.37 Aligned_cols=139 Identities=19% Similarity=0.293 Sum_probs=89.2
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCc----
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI---- 566 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~---- 566 (706)
+..+.--+|+|+.+..+| +.|+|+|+.|= +.....|. .....|..| ..|++|+.|+..+.
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGL-----------TCT~~Nfi--~Ksg~qq~As~hgl~vV~PDTSPRG~~v 89 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGL-----------TCTHENFI--EKSGFQQQASKHGLAVVAPDTSPRGVEV 89 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCC-----------cccchhhH--hhhhHHHhHhhcCeEEECCCCCCCcccc
Confidence 456777899999876555 58999999872 22222221 123445555 48999998655432
Q ss_pred CCC--------CCCCCc----hhhHH--HHHHHHHHHHHHHHHc--CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 567 IGE--------GDKLPN----DRFVE--QLVSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 567 ~g~--------g~~~~~----~~~~~--~~~~D~~~~~~~l~~~--~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
.|. |-.|.- +.|.+ .+++-+..-+-.++.. -.+|+.+++|+||||||+.|+....++|.+++.+
T Consensus 90 ~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSv 169 (283)
T KOG3101|consen 90 AGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSV 169 (283)
T ss_pred CCCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccce
Confidence 121 111111 12222 1222222212122221 2389999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCcc
Q 005240 631 IARSGSYNKTLTPFG 645 (706)
Q Consensus 631 v~~~~~~d~~~~~~~ 645 (706)
.+++|++|...+||+
T Consensus 170 SAFAPI~NP~~cpWG 184 (283)
T KOG3101|consen 170 SAFAPICNPINCPWG 184 (283)
T ss_pred eccccccCcccCcch
Confidence 999999998877764
No 74
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.26 E-value=1.1e-11 Score=120.37 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=98.7
Q ss_pred EEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 005240 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 594 (706)
Q Consensus 516 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~ 594 (706)
|||+|||++..+.. .........+++ .|++|+.++|+-... .-....++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~------------~~~~~~~~~la~~~g~~v~~~~Yrl~p~--------~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSK------------ESHWPFAARLAAERGFVVVSIDYRLAPE--------APFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGT------------TTHHHHHHHHHHHHTSEEEEEE---TTT--------SSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCCh------------HHHHHHHHHHHhhccEEEEEeecccccc--------ccccccccccccceeeec
Confidence 78999997643111 112345566775 999999988874311 123567899999999999
Q ss_pred Hc---CCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccCCCCC-CCC-------------Ccc--------
Q 005240 595 RR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNK-TLT-------------PFG-------- 645 (706)
Q Consensus 595 ~~---~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~~~d~-~~~-------------~~~-------- 645 (706)
++ ..+|++||+|+|+|.||+|++.++.+..+ .++++++.+|..|. ... +..
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 23789999999999999999999965433 48999999998765 210 000
Q ss_pred ----------------------c------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 646 ----------------------F------------------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 646 ----------------------~------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
. +..+|+++|++.|+++++++++|..|.|.
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNASDLKGLPPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGSSCCTTCHEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccccccccCCCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 11299999999999999999999999873
No 75
>PLN00021 chlorophyllase
Probab=99.25 E-value=3.2e-10 Score=115.24 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=116.6
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
..+++.+++|.. .+++|+||++||.... .......+..|+++||+|++++..+..+. .
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~--~ 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGP--D 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCC--C
Confidence 478999999975 2358999999996421 11112455678899999999776543221 1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCCC
Q 005240 573 LPNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 639 (706)
Q Consensus 573 ~~~~~~~~~~~~D~~~~~~~l~~~--------~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d~ 639 (706)
. ...+.|..++++|+.+. ..+|.+|++++|||+||++++.++.+.++ +|+++++..|+...
T Consensus 95 -~-----~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 -G-----TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred -c-----hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 1 12345566667777652 23678999999999999999999998864 68899988875422
Q ss_pred CC-------------------CC----------------------ccchHHHHHHHHHhCCCcEEEEEeCCCCccCC-Cc
Q 005240 640 TL-------------------TP----------------------FGFQAERFFDALKGHGALSRLVLLPFEHHVYA-AR 677 (706)
Q Consensus 640 ~~-------------------~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~-~~ 677 (706)
.. .| ......+|+++++. +..+++.++.+|.-. ..
T Consensus 169 ~~~~~~~p~il~~~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~~~gH~~~~~~ 245 (313)
T PLN00021 169 SKGKQTPPPVLTYAPHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAKDYGHMDMLDD 245 (313)
T ss_pred ccccCCCCcccccCcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---CeeeeeecCCCcceeecC
Confidence 10 01 01112367777654 678889999999532 10
Q ss_pred ---------------------ccHHHHHHHHHHHHHHHhccCC
Q 005240 678 ---------------------ENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 678 ---------------------~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
..+......++.||+.+|..+.
T Consensus 246 ~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 246 DTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred CCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 1134555678999999886543
No 76
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.25 E-value=8.7e-09 Score=104.39 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=138.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|.+++|+.. ..+.+-+.+ ...+.-+++||.|-+||-. +...+|.+++....+. +...+...
T Consensus 39 ksv~ir~i~~~---~~~~iYtEH--~~~vtVAkySPsG~yiASG----------D~sG~vRIWdtt~~~h--iLKnef~v 101 (603)
T KOG0318|consen 39 KSVIIRNIDNP---ASVDIYTEH--AHQVTVAKYSPSGFYIASG----------DVSGKVRIWDTTQKEH--ILKNEFQV 101 (603)
T ss_pred CEEEEEECCCc---cceeeeccc--cceeEEEEeCCCceEEeec----------CCcCcEEEEeccCcce--eeeeeeee
Confidence 46778888662 233333422 2246778999999988764 4456677777544321 21112223
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCcee-ecCCCcccccccchhccCCchhhhhhhhcccceEEEE-
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQ-SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG- 162 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~- 162 (706)
+.+.+.+++|++||++|+..... +..+.-...-..|..+. ...+.+.+..+.++ ..+-|++
T Consensus 102 ~aG~I~Di~Wd~ds~RI~avGEG-rerfg~~F~~DSG~SvGei~GhSr~ins~~~K----------------psRPfRi~ 164 (603)
T KOG0318|consen 102 LAGPIKDISWDFDSKRIAAVGEG-RERFGHVFLWDSGNSVGEITGHSRRINSVDFK----------------PSRPFRIA 164 (603)
T ss_pred cccccccceeCCCCcEEEEEecC-ccceeEEEEecCCCccceeeccceeEeeeecc----------------CCCceEEE
Confidence 34448899999999998876421 21110000000000000 00011111111110 0111111
Q ss_pred --------cc-CCCceec--CC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccC
Q 005240 163 --------SL-DGTAKDF--GT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDL 227 (706)
Q Consensus 163 --------~l-~g~~~~l--t~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~ 227 (706)
.+ .|.|-+. +. . ..+.++++||||++++-...+ ..+++||-.++ ++..|.+.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-------------gki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-------------GKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC-------------ccEEEEcCCCccEEEEecCC
Confidence 11 2211111 11 1 356789999999998766554 37999998744 45555543
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eeec---cccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL---DLRFRS 303 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~---~~~~~~ 303 (706)
.... .++..++||||+++ ++-++ ++. .+.+||+ .+.+..+ +.-. ..+.-.
T Consensus 232 ~aHk----------GsIfalsWsPDs~~-~~T~S----aDk--------t~KIWdV---s~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 232 DAHK----------GSIFALSWSPDSTQ-FLTVS----ADK--------TIKIWDV---STNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CCcc----------ccEEEEEECCCCce-EEEec----CCc--------eEEEEEe---eccceEEEeecCCchhceEEE
Confidence 3221 34668999999998 65443 222 3567777 4444333 3211 122334
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|..| .|+..+ .. ..|-.++++..+ +..+..+.... ...++.++||++|+...
T Consensus 286 ~lWqkd--~lItVS-l~---G~in~ln~~d~~--~~~~i~GHnK~------ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 286 CLWQKD--HLITVS-LS---GTINYLNPSDPS--VLKVISGHNKS------ITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEeCC--eEEEEE-cC---cEEEEecccCCC--hhheecccccc------eeEEEEcCCCCEEEeec
Confidence 457633 344333 11 235566666642 33332222221 22366789998887654
No 77
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.23 E-value=5.7e-10 Score=126.52 Aligned_cols=150 Identities=20% Similarity=0.186 Sum_probs=111.3
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHc--CCCC------------CCcEEEEEec
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR--GVAD------------PSRIAVGGHS 610 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~--~~id------------~~~i~i~G~S 610 (706)
...+.|+++||+|+..+.+|.. .+... ..+.....+|..++|+||..+ .+.| ..|||++|.|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg---~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTR---GSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCC---CCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 4567899999999996666443 33222 223366789999999999964 2334 5799999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEeccCCCCCCC---------CCc-------------------------------------
Q 005240 611 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------TPF------------------------------------- 644 (706)
Q Consensus 611 ~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~---------~~~------------------------------------- 644 (706)
|||++++.+|+..|..++|+|+.+++.++.. .|.
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~ 426 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAE 426 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhh
Confidence 9999999999999999999999988754310 000
Q ss_pred ----------cc----------------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 645 ----------GF----------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 645 ----------~~----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
.+ +..+++++|++.+++.++++.++ +|........
T Consensus 427 ~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~~ 505 (767)
T PRK05371 427 LTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQS 505 (767)
T ss_pred hhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchhH
Confidence 00 01188999999999999988876 6866544456
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 005240 681 MHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l~~~~ 699 (706)
.++.+.+.+||++||+...
T Consensus 506 ~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 506 IDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred HHHHHHHHHHHHhccccCC
Confidence 7888999999999997543
No 78
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.22 E-value=7e-09 Score=111.76 Aligned_cols=319 Identities=13% Similarity=0.081 Sum_probs=174.0
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcC--CCce-eecccCCCcccc---ccccceEEecCCcEEEEEecCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICLN---AVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~--~g~~-~~lt~~~~~~~~---~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..|.+.+|....+ .....-+|+.... .++. +.|.....-.-. .....+.+||||++|+|.....+.+
T Consensus 76 ~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e-- 148 (414)
T PF02897_consen 76 RRGGYYYYSRNQG-----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE-- 148 (414)
T ss_dssp EETTEEEEEEE-S-----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS--
T ss_pred EECCeEEEEEEcC-----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCc--
Confidence 4677887776521 1233456666655 3443 334322111000 1123577899999999986543332
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecC-CCceEeeeeeCCCCcEEEE
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG-TPAVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt-~~~~~~~~~~SpDG~~i~~ 191 (706)
...|+++|+ +|+...-. .......+.|++||+.++|
T Consensus 149 ------------------------------------------~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 149 ------------------------------------------WYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp ------------------------------------------EEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred ------------------------------------------eEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence 268999999 66322111 1112224999999999999
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+......... ......+|+++.+.+.... .+....... .+ ...+..|+|++. |+....... .
T Consensus 187 ~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---~~-------~~~~~~s~d~~~-l~i~~~~~~-~-- 250 (414)
T PF02897_consen 187 TRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP---FW-------FVSVSRSKDGRY-LFISSSSGT-S-- 250 (414)
T ss_dssp EECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---TS-------EEEEEE-TTSSE-EEEEEESSS-S--
T ss_pred EEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC---cE-------EEEEEecCcccE-EEEEEEccc-c--
Confidence 9876532100 1123578999999865432 444333211 00 115678999997 543332221 1
Q ss_pred cccCccceeeeecCCCCCCC-----CceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC-Cce-ee
Q 005240 270 VEVSPRDIIYTQPAEPAEGE-----KPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APR-VL 341 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~l 341 (706)
...+|++++ ..+ +++.|... ......+... |..+++.++......+|+.++++.... ... .+
T Consensus 251 -----~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l 320 (414)
T PF02897_consen 251 -----ESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL 320 (414)
T ss_dssp -----EEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE
T ss_pred -----CCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEE
Confidence 135889988 332 55666543 3343444444 556666666666788999999998541 112 22
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC-CCceeeeecccchhhhh
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFE 420 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~ 420 (706)
....- +...-.++..+.+|++.... .....|..+++. +.....+......
T Consensus 321 ~~~~~-------~~~l~~~~~~~~~Lvl~~~~------------------~~~~~l~v~~~~~~~~~~~~~~p~~g---- 371 (414)
T PF02897_consen 321 IPEDE-------DVSLEDVSLFKDYLVLSYRE------------------NGSSRLRVYDLDDGKESREIPLPEAG---- 371 (414)
T ss_dssp E--SS-------SEEEEEEEEETTEEEEEEEE------------------TTEEEEEEEETT-TEEEEEEESSSSS----
T ss_pred cCCCC-------ceeEEEEEEECCEEEEEEEE------------------CCccEEEEEECCCCcEEeeecCCcce----
Confidence 22110 00112234556666665533 223467778887 3333333222211
Q ss_pred hhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 421 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.+ ...+..+++..+.|.+++..+|+.+|.+|+++++.+.|..
T Consensus 372 ~v-------~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 372 SV-------SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EE-------EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred EE-------eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 01 1245567889999999999999999999999999988863
No 79
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=2e-10 Score=109.75 Aligned_cols=130 Identities=25% Similarity=0.287 Sum_probs=91.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcC--
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPII-- 567 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~-- 567 (706)
+|...+++||.|+..+.+ .|+||++||+.... .++... + -...++ ..||.|+.++..+..
T Consensus 43 ~g~~r~y~l~vP~g~~~~----apLvv~LHG~~~sg---ag~~~~-----s-----g~d~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 43 NGLKRSYRLYVPPGLPSG----APLVVVLHGSGGSG---AGQLHG-----T-----GWDALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred CCCccceEEEcCCCCCCC----CCEEEEEecCCCCh---HHhhcc-----c-----chhhhhcccCcEEECcCccccccC
Confidence 678899999999986543 39999999985321 111110 0 123345 489999986443221
Q ss_pred --CCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 568 --GEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 568 --g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.+..+... .-..+.+..+.+.+..|+.+.-|||.||.|.|.|.||.|+..+++.+|++|.|+..+++..
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 111111111 1223557778888888988888999999999999999999999999999999999988765
No 80
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.21 E-value=1.1e-08 Score=103.65 Aligned_cols=63 Identities=27% Similarity=0.389 Sum_probs=46.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..+++||||+++|-+.. ...++++|-++|+..-.... ...-.+.+-.+.||||+++|+..+
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEec
Confidence 6788999999999988743 46899999888876554332 112233466889999999988764
No 81
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.21 E-value=1.8e-09 Score=113.83 Aligned_cols=131 Identities=16% Similarity=0.048 Sum_probs=92.2
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
......+...++..+....+.|..- .+.|+||++||.+.. ......++..|+++||.|+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~~-----~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~ 168 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAAG-----EMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA 168 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCCC-----CCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE
Confidence 4566667777888999999999641 124789999995311 00112456678889999999
Q ss_pred cCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC---ceeEEEecc
Q 005240 561 GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---LFCCGIARS 634 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~---~~~a~v~~~ 634 (706)
.+.+ |+|.+... ....+...+|+..+++++..+. +..++.|+||||||.+++.++. +|+ +++++|+.+
T Consensus 169 ~D~r---GhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~s 242 (395)
T PLN02652 169 MDWI---GHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTS 242 (395)
T ss_pred eCCC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEEC
Confidence 6665 45544332 2245667889999999987652 2347999999999999987764 554 788999888
Q ss_pred CCC
Q 005240 635 GSY 637 (706)
Q Consensus 635 ~~~ 637 (706)
|..
T Consensus 243 P~l 245 (395)
T PLN02652 243 PAL 245 (395)
T ss_pred ccc
Confidence 853
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.21 E-value=8.3e-09 Score=108.83 Aligned_cols=296 Identities=18% Similarity=0.174 Sum_probs=176.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC--ceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+..+.|+--|.||||.+. +-.+|-+++-.+. -.+|-.+.. .+...+.||||++|+....+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsEsYVlKQQgH~~------~i~~l~YSpDgq~iaTG~eD-- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSESYVLKQQGHSD------RITSLAYSPDGQLIATGAED-- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCC---------ccceEEEEEeeccceeeecccccc------ceeeEEECCCCcEEEeccCC--
Confidence 5778899999999999763 3456665554433 233332222 26788999999998865421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG 186 (706)
+.+-++|. .|- ....+++ ..++.+.|+..|
T Consensus 372 -----------------------------------------------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 372 -----------------------------------------------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG 404 (893)
T ss_pred -----------------------------------------------CcEEEEeccCceEEEEeccCCCceEEEEEEecC
Confidence 34556676 552 3345555 678899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+.|+-.+.++ .+..||+. ....|.++... |.++. .++--|.|. |+++...+
T Consensus 405 ~~llssSLDG-------------tVRAwDlkRYrNfRTft~P~-----p~Qfs-------cvavD~sGe--lV~AG~~d- 456 (893)
T KOG0291|consen 405 NVLLSSSLDG-------------TVRAWDLKRYRNFRTFTSPE-----PIQFS-------CVAVDPSGE--LVCAGAQD- 456 (893)
T ss_pred CEEEEeecCC-------------eEEeeeecccceeeeecCCC-----ceeee-------EEEEcCCCC--EEEeeccc-
Confidence 9887666653 78889987 45566655432 11111 223334454 55443221
Q ss_pred CCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
.-.||+|++ .+|+.-. |..+.+.+..+.|+|+|..|+..+++. ..++|-+=-..++.++..+
T Consensus 457 ---------~F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i--- 519 (893)
T KOG0291|consen 457 ---------SFEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK--TVRIWDIFSSSGTVETLEI--- 519 (893)
T ss_pred ---------eEEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeEEeccccc--eEEEEEeeccCceeeeEee---
Confidence 124999999 6776654 567788999999999999999887654 4567755333322333333
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCcee----eeecCCCce--eeeecccchhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD----LFDINTGSK--ERIWESNREKY 418 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~----~~d~~~g~~--~~l~~~~~~~~ 418 (706)
..++..++++|||+.|++.... +...+|-...+. .+. +-|+..|.. .+++.....
T Consensus 520 -------~sdvl~vsfrPdG~elaVaTld---gqItf~d~~~~~-------q~~~IdgrkD~~~gR~~~D~~ta~~sa-- 580 (893)
T KOG0291|consen 520 -------RSDVLAVSFRPDGKELAVATLD---GQITFFDIKEAV-------QVGSIDGRKDLSGGRKETDRITAENSA-- 580 (893)
T ss_pred -------ccceeEEEEcCCCCeEEEEEec---ceEEEEEhhhce-------eeccccchhhccccccccceeehhhcc--
Confidence 1233457889999999887642 222233222221 111 223333321 122211100
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
.- .-.....+|+||+.|+..+.+.. |.+|+..++-..
T Consensus 581 --~~----K~Ftti~ySaDG~~IlAgG~sn~----iCiY~v~~~vll 617 (893)
T KOG0291|consen 581 --KG----KTFTTICYSADGKCILAGGESNS----ICIYDVPEGVLL 617 (893)
T ss_pred --cC----CceEEEEEcCCCCEEEecCCccc----EEEEECchhhee
Confidence 00 01124689999999987665554 889998887443
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=3.1e-10 Score=111.28 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=123.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
..+++.+|||+|++||.++. +...-+|.+..++.- .+.+..+ ...+.-+.||||.++|+.-..
T Consensus 225 dEVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh-----~~~V~yi~wSPDdryLlaCg~-- 289 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGH-----SQPVSYIMWSPDDRYLLACGF-- 289 (519)
T ss_pred CcEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecc-----cCceEEEEECCCCCeEEecCc--
Confidence 36999999999999999874 445667887766551 1112111 123778899999998764321
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCC-C--ceEeeeeeCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P--AVYTAVEPSP 184 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~-~--~~~~~~~~Sp 184 (706)
...++++|+ +|..+.+.. + ..+.+.+|-|
T Consensus 290 -----------------------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 290 -----------------------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred -----------------------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 134778888 665444332 2 4677899999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
||.+++..+.+ ..++.|+++|........... | -+..++.++||+. ++.+.
T Consensus 323 Dg~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gvr~----~--------~v~dlait~Dgk~-vl~v~--- 373 (519)
T KOG0293|consen 323 DGFRFVTGSPD-------------RTIIMWDLDGNILGNWEGVRD----P--------KVHDLAITYDGKY-VLLVT--- 373 (519)
T ss_pred CCceeEecCCC-------------CcEEEecCCcchhhccccccc----c--------eeEEEEEcCCCcE-EEEEe---
Confidence 99998755543 479999999875332221111 1 1347889999998 44332
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.+. .+++++. +...-+.+......+.++..|.||+.++..- .... +.++|++.
T Consensus 374 -~d~--------~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL--~~qe--i~LWDl~e 426 (519)
T KOG0293|consen 374 -VDK--------KIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNL--QDQE--IHLWDLEE 426 (519)
T ss_pred -ccc--------ceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEc--ccCe--eEEeecch
Confidence 111 3556665 3323333555667788899999999877643 3333 44555554
No 84
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.19 E-value=1.3e-09 Score=103.99 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=119.0
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
...+||+|++||..+. ..|.+.|.++-+..|+...-.. +..+.|+.|...+.+....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeeec-------
Confidence 5689999999998753 5899999888887777533221 6678999999988887431
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C-ceecCCC-ceEeeeeeCCCCcEEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~-~~~lt~~-~~~~~~~~SpDG~~i~~ 191 (706)
..-+.++++.. + .-.+.++ .......|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 13455556533 2 2245555 67789999999999987
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
++.= ..+|-+|.+.+.+...+.... .+...++|.|||+. .+..+..+=.+....
T Consensus 109 tseF------------~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 109 TSEF------------DLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQF-CAILSRRDCKDYVQI 162 (447)
T ss_pred eecc------------eeEEEEEEeccceeEEecccc-------------cCceeEEECCCCce-eeeeecccHHHHHHH
Confidence 7632 358899999987765553332 23457899999996 444432221111000
Q ss_pred c--CccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 272 V--SPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 272 ~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
. ...-.+.-.++ ..-....+.|||||..|++-. .--...+|.+.-
T Consensus 163 ~~c~~W~ll~~f~~-------------dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~ 209 (447)
T KOG4497|consen 163 SSCKAWILLKEFKL-------------DTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYER 209 (447)
T ss_pred HhhHHHHHHHhcCC-------------CcccccCceECCCCcEEEEec--chhhheeeeeee
Confidence 0 00000111111 123456789999999998743 223445665554
No 85
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.19 E-value=1.2e-09 Score=110.60 Aligned_cols=190 Identities=18% Similarity=0.148 Sum_probs=133.4
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
...+..+.+.||..+....+.++.- +..+||++||... +.......+..|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~E---------------h~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLGE---------------HSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCC------CCcEEEEecCchH---------------HHHHHHHHHHHHHhCCCEEEE
Confidence 3445667778999999999988751 1268999999632 111122456788999999998
Q ss_pred cCCCCcCCCCCCC-Cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 561 GPSIPIIGEGDKL-PN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~-~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
..-+|+|.+. .. -........|+...++.+.+.. . ..++.++||||||.+++..+.+++..+.++|+.+|.
T Consensus 67 ---~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~-~-~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~ 141 (298)
T COG2267 67 ---LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD-P-GLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPA 141 (298)
T ss_pred ---ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC-C-CCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcc
Confidence 3444566553 21 1224566777777777665541 1 368999999999999999999999999999999998
Q ss_pred CCCCC------------------------CC----cc-c-----------------------------------------
Q 005240 637 YNKTL------------------------TP----FG-F----------------------------------------- 646 (706)
Q Consensus 637 ~d~~~------------------------~~----~~-~----------------------------------------- 646 (706)
+.... .+ .. .
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~ 221 (298)
T COG2267 142 LGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPAL 221 (298)
T ss_pred ccCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccch
Confidence 65330 01 00 0
Q ss_pred ---------------------h-HHHHHHHHHhCCCc-EEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhc
Q 005240 647 ---------------------Q-AERFFDALKGHGAL-SRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 696 (706)
Q Consensus 647 ---------------------~-~~~~~~~l~~~~~~-~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f~~~~l~ 696 (706)
. .+...+.+++.+.+ .++++|||+.|........ .++++.+.+||.+++.
T Consensus 222 ~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 222 RDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred hccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 0 00333344455554 6999999999999877776 8999999999999764
No 86
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.18 E-value=1.5e-09 Score=107.03 Aligned_cols=193 Identities=18% Similarity=0.161 Sum_probs=122.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC--CcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~~~~~ 109 (706)
.+....||+|++.||..+- +|...||-++ .....+...+... .+....|+|. +..|+..+.+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEecccc----ceeeEEEccCCCccceeeeccC--
Confidence 4667899999999998764 6667787654 4454444433322 2778899997 4456654321
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG 186 (706)
+.+-++++++ ....|+.. ..+..++|.|+|
T Consensus 241 -----------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 241 -----------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred -----------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 2333444433 44555555 677899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
++|.-.+.+. .-.+||+.++..-.+ ..+.. .++..++|.+||. |+.. .+-
T Consensus 274 ~~L~TasfD~-------------tWRlWD~~tk~ElL~--QEGHs----------~~v~~iaf~~DGS--L~~t---GGl 323 (459)
T KOG0272|consen 274 KFLGTASFDS-------------TWRLWDLETKSELLL--QEGHS----------KGVFSIAFQPDGS--LAAT---GGL 323 (459)
T ss_pred ceeeeccccc-------------chhhcccccchhhHh--hcccc----------cccceeEecCCCc--eeec---cCc
Confidence 9998776654 345789887643222 22221 4567899999998 4422 222
Q ss_pred CCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
+. .-.+||+ .+|. +-.|..+...+..+.|||+|-.|+..+.+ ..-+||.+-
T Consensus 324 D~--------~~RvWDl---Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D--nt~kVWDLR 375 (459)
T KOG0272|consen 324 DS--------LGRVWDL---RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD--NTCKVWDLR 375 (459)
T ss_pred cc--------hhheeec---ccCcEEEEecccccceeeEeECCCceEEeecCCC--CcEEEeeec
Confidence 22 1346777 4443 33345678889999999999999976532 345566554
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=4.4e-08 Score=102.14 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=81.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-Cee-EEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
.....++++|||++|+..... ...+.+|+++. +.. +.+....+. .++..+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEGL-----------EGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccCC-----------CcccEeEeCCC
Confidence 356689999999999766543 24788888862 211 111111110 12335689999
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-----Ee-ecccccccceecCCCceEEEEeeccccceEE
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-----LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l 326 (706)
|+. |+.. +. ..+.|.++|++ ..+.+.. +. ........+.|+|||++++... +.++...+
T Consensus 137 g~~-l~v~-~~----------~~~~v~v~d~~--~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-~~~~~v~v 201 (330)
T PRK11028 137 NRT-LWVP-CL----------KEDRIRLFTLS--DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-ELNSSVDV 201 (330)
T ss_pred CCE-EEEe-eC----------CCCEEEEEEEC--CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe-cCCCEEEE
Confidence 986 5533 22 11247777773 2233221 11 1123345689999999888764 33344445
Q ss_pred EEEcCCCCCCCceeeecCccc-ccccCCC-CCceEeccCCCEEEEee
Q 005240 327 WLVCPGSKDVAPRVLFDRVFE-NVYSDPG-SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~s~dg~~l~~~~ 371 (706)
|.++..++ +.+.+..-... .-...+. ...+.++|||++++...
T Consensus 202 ~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 202 WQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred EEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 55543332 22222111100 0000111 11366799999988763
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=5.8e-09 Score=96.68 Aligned_cols=271 Identities=14% Similarity=0.209 Sum_probs=154.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|+-||.+||-.+. ++...+|.++.. +.+......+....+..+.|+|-..-+++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~~----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLERD----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecch----hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 4788999999999998764 455566655543 222222222222236788998755433443211
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
...+-++|. .+++..-++. ...-.+.|||||+++
T Consensus 86 --------------------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 86 --------------------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred --------------------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 134556677 5655443333 556688999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
++..... .|-.+|...-++..-.. .+++ .-.+.|+.++. ++|+.+-. |...
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~------~~~e-------~ne~~w~~~nd--~Fflt~Gl-G~v~ 172 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQ------FKFE-------VNEISWNNSND--LFFLTNGL-GCVE 172 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhc------ccce-------eeeeeecCCCC--EEEEecCC-ceEE
Confidence 9877653 45555554333222111 1111 22678886655 77774321 2111
Q ss_pred cccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCccc
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFE 347 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~ 347 (706)
|..++. -..++.|..++....-+.|+|+|++++..+.+ ....|| |++.- ...+.+ .++++.
T Consensus 173 --------ILsyps----Lkpv~si~AH~snCicI~f~p~GryfA~GsAD--AlvSLW--D~~EL-iC~R~isRldwpVR 235 (313)
T KOG1407|consen 173 --------ILSYPS----LKPVQSIKAHPSNCICIEFDPDGRYFATGSAD--ALVSLW--DVDEL-ICERCISRLDWPVR 235 (313)
T ss_pred --------EEeccc----cccccccccCCcceEEEEECCCCceEeecccc--ceeecc--ChhHh-hhheeeccccCceE
Confidence 222221 12233456667777788999999999987632 233344 44331 123333 244433
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
. ++||.||++|+.... ..++...+..||. ++|+.+-. +
T Consensus 236 T---------lSFS~dg~~lASaSE---------------------Dh~IDIA~vetGd--~~~eI~~~----------~ 273 (313)
T KOG1407|consen 236 T---------LSFSHDGRMLASASE---------------------DHFIDIAEVETGD--RVWEIPCE----------G 273 (313)
T ss_pred E---------EEeccCcceeeccCc---------------------cceEEeEecccCC--eEEEeecc----------C
Confidence 2 678999999876541 1234455666774 56665422 2
Q ss_pred CCCceecccCCCEEEEEEecCCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTE 450 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~ 450 (706)
....++|.|....|+|+.++.+.
T Consensus 274 ~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred CceeEEecCCCceeeEEecCCCC
Confidence 34468999998888888766653
No 89
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.17 E-value=4.6e-10 Score=99.98 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=120.5
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
++++.+.+.-| .+++. +.|.. . ...|+.|.+|..|...|. ..+..-...+..|.++||+++..
T Consensus 4 ~~~v~i~Gp~G-~le~~-~~~~~-~----~~~~iAli~HPHPl~gGt----------m~nkvv~~la~~l~~~G~atlRf 66 (210)
T COG2945 4 MPTVIINGPAG-RLEGR-YEPAK-T----PAAPIALICHPHPLFGGT----------MNNKVVQTLARALVKRGFATLRF 66 (210)
T ss_pred CCcEEecCCcc-cceec-cCCCC-C----CCCceEEecCCCccccCc----------cCCHHHHHHHHHHHhCCceEEee
Confidence 34555655444 44443 44543 1 136888889988754211 22222334566788899999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC---
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN--- 638 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d--- 638 (706)
|+|| -|++....+.+-.+.+|..++++|++++.. +..-..++|+|+|++++..++.+.|+. ...++..|..+
T Consensus 67 NfRg---VG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~d 141 (210)
T COG2945 67 NFRG---VGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAYD 141 (210)
T ss_pred cccc---cccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCchh
Confidence 7764 444544444445568999999999999854 333458899999999999999999653 33344444444
Q ss_pred CC-CC--Cc--c-c-----hHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 639 KT-LT--PF--G-F-----QAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 639 ~~-~~--~~--~-~-----~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
.. .. |. . . +-..+..+|+. ++.+.++++.++++|.|.. +...+.+.+.+|+.
T Consensus 142 fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~~~~~~i~i~~a~HFF~g--Kl~~l~~~i~~~l~ 205 (210)
T COG2945 142 FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQESIKITVITIPGADHFFHG--KLIELRDTIADFLE 205 (210)
T ss_pred hhhccCCCCCceeEecChhhhhcHHHHHHhhcCCCCceEEecCCCceecc--cHHHHHHHHHHHhh
Confidence 11 11 21 1 1 11266666664 3478899999999999975 45677788888884
No 90
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.17 E-value=3.6e-08 Score=92.45 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=130.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-----CCceee-cccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-----TGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-----~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+...+..+.+..+.+.+.+| ..+.++++. .|.+.+ ++-+.+ .+.....|+||.+.+..+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEecc
Confidence 577888889988898887653 344444443 344444 443222 377899999999644332
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC--ceEeeeee
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEP 182 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~--~~~~~~~~ 182 (706)
. ...|.++|+ .|+.++...+ .++.++++
T Consensus 83 w-------------------------------------------------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 83 W-------------------------------------------------DGTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred c-------------------------------------------------cceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 1 156788899 5666655555 78999999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||.++|+-.+.+ ..|.+|+.-|...-++...... +.+..+.|+|+... .+.++
T Consensus 114 s~dn~qivSGSrD-------------kTiklwnt~g~ck~t~~~~~~~-----------~WVscvrfsP~~~~-p~Ivs- 167 (315)
T KOG0279|consen 114 STDNRQIVSGSRD-------------KTIKLWNTLGVCKYTIHEDSHR-----------EWVSCVRFSPNESN-PIIVS- 167 (315)
T ss_pred cCCCceeecCCCc-------------ceeeeeeecccEEEEEecCCCc-----------CcEEEEEEcCCCCC-cEEEE-
Confidence 9999999754433 4799999988776655544211 22447799999754 33332
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.+ +...+.+||+ ++-+.+. ...+.+.+..+++||||..+++.. + ...++++|++.+
T Consensus 168 -~s--------~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg--k--dg~~~LwdL~~~ 224 (315)
T KOG0279|consen 168 -AS--------WDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG--K--DGEAMLWDLNEG 224 (315)
T ss_pred -cc--------CCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecCC--C--CceEEEEEccCC
Confidence 11 2235888998 5555544 346688899999999999888632 2 345677777774
No 91
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=1.4e-09 Score=105.88 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred cceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccc
Q 005240 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 245 ~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
..+.||||++. |+-.+ .+. -|.+|+. .+|+. ..+-.+-..++.++||.|.+.|+..+ .+..
T Consensus 371 n~V~fSPd~r~-IASaS----FDk--------SVkLW~g---~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S--kDsT 432 (480)
T KOG0271|consen 371 NHVSFSPDGRY-IASAS----FDK--------SVKLWDG---RTGKFLASFRGHVAAVYQVAWSADSRLLVSGS--KDST 432 (480)
T ss_pred eeEEECCCccE-EEEee----ccc--------ceeeeeC---CCcchhhhhhhccceeEEEEeccCccEEEEcC--CCce
Confidence 36799999986 54222 122 2566766 44443 33445677889999999999888654 2234
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
.++| ++.+.+ ...|-.. ...-+|.+-|||||..++..
T Consensus 433 LKvw--~V~tkK----l~~DLpG----h~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 433 LKVW--DVRTKK----LKQDLPG----HADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred EEEE--Eeeeee----ecccCCC----CCceEEEEEecCCCceeecC
Confidence 4444 444421 1112110 01123457799999987653
No 92
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1e-07 Score=93.23 Aligned_cols=313 Identities=12% Similarity=0.051 Sum_probs=171.3
Q ss_pred eEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCc
Q 005240 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPK 123 (706)
Q Consensus 44 ~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (706)
..+|+.+..+ ..+..-.+|.+|.++|+...+-..... ..+.-++|+|+++.||........
T Consensus 3 ~~~YiGtyT~---~~s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~~~~~~~LY~v~~~~~~------------- 63 (346)
T COG2706 3 QTVYIGTYTK---RESQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAVNPDQRHLYVVNEPGEE------------- 63 (346)
T ss_pred eEEEEeeecc---cCCCceEEEEEeCcccccchhhhcccc---CCCceEEECCCCCEEEEEEecCCc-------------
Confidence 4456655321 113334455555556655433211110 125677899999998876432110
Q ss_pred eeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC----ceEeeeeeCCCCcEEEEEeeccCc
Q 005240 124 IQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
+.-.-|.+|- +|+.+.+... .....+++++||++|+...-..
T Consensus 64 -------------------------------ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-- 110 (346)
T COG2706 64 -------------------------------GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-- 110 (346)
T ss_pred -------------------------------CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence 1234566665 4765555332 3346788999998886544332
Q ss_pred ccccccccccceEEEEecCC-CeeEEc---ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCc
Q 005240 199 SYKVPCARFSQKVQVWTTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~-~~~~~l---~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~ 274 (706)
..|.++.++. +.+..+ ..+.+..-.+.+.. ...-...+.||++. |+.+ +-+.
T Consensus 111 ----------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~---~h~H~a~~tP~~~~-l~v~---DLG~------- 166 (346)
T COG2706 111 ----------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES---PHVHSANFTPDGRY-LVVP---DLGT------- 166 (346)
T ss_pred ----------ceEEEEEcccCCccccceeeeecCCCCCCccccC---CccceeeeCCCCCE-EEEe---ecCC-------
Confidence 3566666642 322222 11111100010000 01224578899986 4433 2222
Q ss_pred cceeeeecCCCCCCCCceEEe----ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCcccc
Q 005240 275 RDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFEN 348 (706)
Q Consensus 275 ~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~ 348 (706)
++|+++++ +.|..+... ........+.|+|+++..+...+. +....+|.++...+ +...| ...--++
T Consensus 167 -Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g--~~~~lQ~i~tlP~d 239 (346)
T COG2706 167 -DRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVG--KFEELQTIDTLPED 239 (346)
T ss_pred -ceEEEEEc---ccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCc--eEEEeeeeccCccc
Confidence 34777777 345444322 334456778999999987776533 35667888887754 33333 1111122
Q ss_pred cccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee--ecccchhhhhhhhhhc
Q 005240 349 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI--WESNREKYFETAVALV 426 (706)
Q Consensus 349 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~ 426 (706)
.....+...+..++||++|+++... -+...++.+|.++|+.+-+ +...+. .
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg------------------~dsI~~f~V~~~~g~L~~~~~~~teg~-----~---- 292 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRG------------------HDSIAVFSVDPDGGKLELVGITPTEGQ-----F---- 292 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCC------------------CCeEEEEEEcCCCCEEEEEEEeccCCc-----C----
Confidence 2223344568889999999887521 1233467788887764333 222210 0
Q ss_pred cCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 427 ~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
+ +.+.++++|+.|+.+.....+ -.+|..|.++|+.+.+..
T Consensus 293 P--R~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 293 P--RDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred C--ccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 1 246899999888877665554 668888888888777764
No 93
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.15 E-value=3.3e-10 Score=114.24 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=90.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
||+.|.+.+|+| +.+. .+|+|+||..|+=.... + ................+.|+++||+|+..+.| |.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~----~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~R---G~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGD----Q-TASDLAGANPGPPSARRPFAERGYAVVVQDVR---GTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC------HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-T---TST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCC----C-cccchhhhhcccchhHHHHHhCCCEEEEECCc---ccc
Confidence 799999999999 3222 34799999987521100 0 00000000000000112389999999986665 444
Q ss_pred CCCCchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC
Q 005240 571 DKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 641 (706)
Q Consensus 571 ~~~~~~~~-~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~ 641 (706)
.+...... .....+|..++|+|+.++++- ..|||++|.||+|+.++.++...|..++|++...+..|...
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 45444333 667899999999999999654 47999999999999999999988899999999999887554
No 94
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.13 E-value=1.6e-08 Score=93.16 Aligned_cols=270 Identities=14% Similarity=0.159 Sum_probs=161.7
Q ss_pred cceeEeecCCCCCCCCee-eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
-+|.+..+.+ |.-. .|. .+++ .+....++||++.||.+ +...|.++|+.++.+.++....+.
T Consensus 20 hTIRfWqa~t----G~C~rTiq-h~ds-qVNrLeiTpdk~~LAaa-----------~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQ-HPDS-QVNRLEITPDKKDLAAA-----------GNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEe-cCcc-ceeeEEEcCCcchhhhc-----------cCCeeEEEEccCCCCCceeEEecc
Confidence 3566666666 5433 343 3443 58889999999999984 457888899998887666433322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|.-||+++|..+.+ +.+-++|
T Consensus 83 --~kNVtaVgF~~dgrWMyTgseD-------------------------------------------------gt~kIWd 111 (311)
T KOG0315|consen 83 --TKNVTAVGFQCDGRWMYTGSED-------------------------------------------------GTVKIWD 111 (311)
T ss_pred --CCceEEEEEeecCeEEEecCCC-------------------------------------------------ceEEEEe
Confidence 1236788899999998865421 4556667
Q ss_pred cCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCcc
Q 005240 164 LDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+.. ..+++... ..+..+...|+...|+... . ...|++||+... -..+|...+.
T Consensus 112 lR~~~~qR~~~~~spVn~vvlhpnQteLis~d-q------------sg~irvWDl~~~~c~~~liPe~~----------- 167 (311)
T KOG0315|consen 112 LRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-Q------------SGNIRVWDLGENSCTHELIPEDD----------- 167 (311)
T ss_pred ccCcccchhccCCCCcceEEecCCcceEEeec-C------------CCcEEEEEccCCccccccCCCCC-----------
Confidence 744 55555544 6778889999988886433 3 248999999854 3333433322
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCC-CCCceEE---eecccccccceecCCCceEEEE
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GEKPEIL---HKLDLRFRSVSWCDDSLALVNE 316 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l---~~~~~~~~~~~wspDg~~l~~~ 316 (706)
..+..++.-|||+. |+-+ .+++..|+|++-... -.+.+.+ ....+..-.-.+|||+++|+..
T Consensus 168 -~~i~sl~v~~dgsm-l~a~------------nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 168 -TSIQSLTVMPDGSM-LAAA------------NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred -cceeeEEEcCCCcE-EEEe------------cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 11446788899987 4422 234557788772100 0122223 2345666777899999999987
Q ss_pred eeccccceEEEEEcCCCC-CCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCC
Q 005240 317 TWYKTSQTRTWLVCPGSK-DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 395 (706)
Q Consensus 317 ~~~~~~~~~l~~~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 395 (706)
+.++ ...|| +.++- +.+ +.| +..-..+ ..-.||.||+||+....+ .
T Consensus 234 ssdk--tv~iw--n~~~~~kle-~~l-~gh~rWv------Wdc~FS~dg~YlvTassd---------------------~ 280 (311)
T KOG0315|consen 234 SSDK--TVKIW--NTDDFFKLE-LVL-TGHQRWV------WDCAFSADGEYLVTASSD---------------------H 280 (311)
T ss_pred cCCc--eEEEE--ecCCceeeE-EEe-ecCCceE------EeeeeccCccEEEecCCC---------------------C
Confidence 6443 33444 44442 111 122 1111111 012368999988665311 1
Q ss_pred ceeeeecCCCceeeeecc
Q 005240 396 FLDLFDINTGSKERIWES 413 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~ 413 (706)
...+.+++.|+..+.+++
T Consensus 281 ~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceeecccccCceeeecCC
Confidence 344567777877666654
No 95
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.12 E-value=3.2e-09 Score=106.06 Aligned_cols=267 Identities=12% Similarity=0.114 Sum_probs=155.4
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+....++.+.|+-||..||+... ...+.+++..|+...-+..+.+. +-++.|+-+|.+|+....
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~----------~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSE----------DGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeec----------CcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEeccC
Confidence 344557899999999999999753 35666667778877777666554 778999999998886543
Q ss_pred CCCCCC-CC-------CCCCCCCC--ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc-eecCCC
Q 005240 107 SSRRDP-PK-------KTMVPLGP--KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTP 174 (706)
Q Consensus 107 ~~~~~~-~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~-~~lt~~ 174 (706)
+..... .. .......+ .+.|..... +. .....+.|+++-+++ .| ..+...
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~---------F~---------ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE---------FA---------TSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEecCce---------Ee---------ecCCCceEEEEEecCCCcceeeecc
Confidence 322110 00 00000000 011111000 00 011224566666644 33 333334
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
+.+..+.|.|.|+.|+-.+.+ ..+.+|+.... ....|-.+. ..+..+.|||+
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~Hs-------------kei~t~~wsp~ 412 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDD-------------GTLKIWSMGQSNSVHDLQAHS-------------KEIYTIKWSPT 412 (524)
T ss_pred cCceEEEEECCCCceEEEecCC-------------CeeEeeecCCCcchhhhhhhc-------------cceeeEeecCC
Confidence 789999999999988766554 37888886532 222222111 12457789988
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
|.- ..+...+.......-...+.+||+ ..+. +-.++.+...+++++|||||+++++.+-+ + .|.+.+.
T Consensus 413 g~v----~~n~~~~~~l~sas~dstV~lwdv---~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d--g--~V~iws~ 481 (524)
T KOG0273|consen 413 GPV----TSNPNMNLMLASASFDSTVKLWDV---ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD--G--CVHIWST 481 (524)
T ss_pred CCc----cCCCcCCceEEEeecCCeEEEEEc---cCCceeEeeccCCCceEEEEecCCCcEEEecCCC--C--eeEeccc
Confidence 863 212222222222223346888888 4444 44567888999999999999999987522 2 3445554
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
.++ +...-. ..+.+.|++.|+.+|.+|.....
T Consensus 482 ~~~--~l~~s~-------~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 482 KTG--KLVKSY-------QGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred cch--heeEee-------cCCCeEEEEEEcCCCCEEEEEec
Confidence 442 111111 11224578999999999887763
No 96
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.11 E-value=6.7e-09 Score=114.07 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=87.3
Q ss_pred CCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC
Q 005240 19 GPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
+...++.+.. ....+.+|++||||+++||+....++. .++..+||+.+. +++.++++.+.. ...+.||||
T Consensus 337 ~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~--~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspD 407 (591)
T PRK13616 337 QGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGA--PDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLD 407 (591)
T ss_pred CCeeeCCCccccccCcccceECCCCCEEEEEEeecCCC--CCcceEEEEEeC-CCcceeeecCCC------CCCceECCC
Confidence 3444554332 123678999999999999999643211 145679999996 556688876542 678999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCCce
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAV 176 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~~~ 176 (706)
|+.|+|.++...-.. ... ....++||++++++ +.++ .....
T Consensus 408 G~~lw~v~dg~~~~~-------------v~~------------------------~~~~gql~~~~vd~ge~~~-~~~g~ 449 (591)
T PRK13616 408 ADAVWVVVDGNTVVR-------------VIR------------------------DPATGQLARTPVDASAVAS-RVPGP 449 (591)
T ss_pred CCceEEEecCcceEE-------------Eec------------------------cCCCceEEEEeccCchhhh-ccCCC
Confidence 999999864211000 000 00236899999965 6654 32356
Q ss_pred EeeeeeCCCCcEEEEEee
Q 005240 177 YTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~ 194 (706)
+..++|||||++|+|...
T Consensus 450 Issl~wSpDG~RiA~i~~ 467 (591)
T PRK13616 450 ISELQLSRDGVRAAMIIG 467 (591)
T ss_pred cCeEEECCCCCEEEEEEC
Confidence 889999999999999873
No 97
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.4e-08 Score=108.15 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=116.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc---eeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+....+||||+.++.... ++ .+.+.++.+++ .+.+..+ ...+..+.|||||++|+-.+.+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~~--~i~~~~~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------DG--LIRIWKLEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------CC--cEEEeecccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5667899999999988753 33 34444444444 2222111 2247899999999977765421
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC-ceEeeeeeCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~-~~~~~~~~Sp 184 (706)
.+|.++++ +. ..+.+... ..+..++|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 56777777 43 34445444 7889999999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
+|+.|+..+.+ ..|.+|++.+++ .+.|..+. .++..++|++||.. |+-.
T Consensus 257 ~g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~-l~s~--- 306 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------------GTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNL-LVSA--- 306 (456)
T ss_pred CCCEEEEecCC-------------CcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCE-EEEc---
Confidence 99666544443 379999999654 44444443 23457799999986 4322
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCc---eEEeeccc--ccccceecCCCceEEEEe
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNET 317 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~--~~~~~~wspDg~~l~~~~ 317 (706)
. ....|.+||+ .++.. +.+..... .+..+.|+|++++|+...
T Consensus 307 -s--------~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 307 -S--------YDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred -C--------CCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 1 1235889998 66662 23433322 478889999999998765
No 98
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=4.8e-08 Score=102.06 Aligned_cols=302 Identities=11% Similarity=0.065 Sum_probs=153.0
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
-.+|.+|.++++...+..... ......+.++|++++||...... .
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~---~~~Ps~l~~~~~~~~LY~~~e~~-~------------------------------- 59 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAE---GENPSWLAVSPDGRRLYVVNEGS-G------------------------------- 59 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEE---SSSECCEEE-TTSSEEEEEETTS-S-------------------------------
T ss_pred EEEEEEcCCCCCceEeeeecC---CCCCceEEEEeCCCEEEEEEccc-c-------------------------------
Confidence 344455557787765532111 11256788999999988875321 0
Q ss_pred cCCchhhhhhhhcccceEEEEcc--C-CCceecC----CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSL--D-GTAKDFG----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l--~-g~~~~lt----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
..+.|..+.+ + |+.+.+. .+.....++++|||++|+...... ..+.++
T Consensus 60 -------------~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~------------g~v~v~ 114 (345)
T PF10282_consen 60 -------------DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG------------GSVSVF 114 (345)
T ss_dssp -------------TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT------------TEEEEE
T ss_pred -------------CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC------------CeEEEE
Confidence 1134444444 4 5554442 234566789999999997655432 467888
Q ss_pred ecCC-CeeEEc---ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC
Q 005240 215 TTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK 290 (706)
Q Consensus 215 ~~~~-~~~~~l---~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 290 (706)
+++. +.+... ....+. .|............+.++|||+. ++ +.+. +. +.|++++.+. .+++
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~-v~-v~dl--G~--------D~v~~~~~~~-~~~~ 179 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRF-VY-VPDL--GA--------DRVYVYDIDD-DTGK 179 (345)
T ss_dssp EECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSE-EE-EEET--TT--------TEEEEEEE-T-TS-T
T ss_pred EccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCE-EE-EEec--CC--------CEEEEEEEeC-CCce
Confidence 8874 333332 111110 00000000012336789999997 54 4332 22 2366666621 2333
Q ss_pred ceEEe----ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc--cccccCCCCCceEeccCC
Q 005240 291 PEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF--ENVYSDPGSPMMTRTSTG 364 (706)
Q Consensus 291 ~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~s~dg 364 (706)
+.... ........+.|+|||++++... +.+....++.++..+ +....+..... ...........+..||||
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDPSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCCcEEEEeecccC--CceeEEEEeeeccccccccCCceeEEEecCC
Confidence 43321 2233456789999999888764 443444455555334 33333311111 010000112347789999
Q ss_pred CEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEE
Q 005240 365 TNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 444 (706)
Q Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~ 444 (706)
++|+++... .+...++.+|.++|+.+.+-...-. ...+ +.+.++|||++|+.+
T Consensus 257 ~~lyvsnr~------------------~~sI~vf~~d~~~g~l~~~~~~~~~--G~~P-------r~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 257 RFLYVSNRG------------------SNSISVFDLDPATGTLTLVQTVPTG--GKFP-------RHFAFSPDGRYLYVA 309 (345)
T ss_dssp SEEEEEECT------------------TTEEEEEEECTTTTTEEEEEEEEES--SSSE-------EEEEE-TTSSEEEEE
T ss_pred CEEEEEecc------------------CCEEEEEEEecCCCceEEEEEEeCC--CCCc-------cEEEEeCCCCEEEEE
Confidence 999887632 1222344555566776555322110 0001 246889999877765
Q ss_pred EecCCCCcEEEEEECCCCceeEeec
Q 005240 445 KESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 445 ~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.. ...--.++.+|.++|+.+.+..
T Consensus 310 ~~-~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 310 NQ-DSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp ET-TTTEEEEEEEETTTTEEEEEEE
T ss_pred ec-CCCeEEEEEEeCCCCcEEEecc
Confidence 43 3344557777888888777653
No 99
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.10 E-value=8.3e-08 Score=90.62 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=143.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....||+|+++|+-++. + ..|.++|.-+.........+.. -+-..++||.|..+++..-+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSq--------D--GklIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLd---- 118 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQ--------D--GKLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLD---- 118 (343)
T ss_pred ceeeeEecCCcCeEEeecc--------C--CeEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcC----
Confidence 5889999999999988764 2 5788889876544443322322 25578999999999986321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CC--C-ceecCCC-ceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG--T-AKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g--~-~~~lt~~-~~~~~~~~Sp 184 (706)
+...||-+.. +| . .+.|... ++++...|-+
T Consensus 119 -------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d 155 (343)
T KOG0286|consen 119 -------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD 155 (343)
T ss_pred -------------------------------------------ceeEEEecccccccccceeeeeecCccceeEEEEEcC
Confidence 1245555543 23 1 2334444 7888999998
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~ 263 (706)
|+..| -.+.+ ....+||+++++..+...+...+ +-.++.+| +++. |++
T Consensus 156 D~~il-T~SGD-------------~TCalWDie~g~~~~~f~GH~gD------------V~slsl~p~~~nt---FvS-- 204 (343)
T KOG0286|consen 156 DNHIL-TGSGD-------------MTCALWDIETGQQTQVFHGHTGD------------VMSLSLSPSDGNT---FVS-- 204 (343)
T ss_pred CCceE-ecCCC-------------ceEEEEEcccceEEEEecCCccc------------EEEEecCCCCCCe---EEe--
Confidence 87544 33332 47899999977665554443222 33678888 7775 342
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
.+-+. .-++||+. ++...+..+.+...+..+.|.|+|-.|+..+++ +.-++|-+-.+. ...++.
T Consensus 205 g~cD~--------~aklWD~R--~~~c~qtF~ghesDINsv~ffP~G~afatGSDD--~tcRlyDlRaD~----~~a~ys 268 (343)
T KOG0286|consen 205 GGCDK--------SAKLWDVR--SGQCVQTFEGHESDINSVRFFPSGDAFATGSDD--ATCRLYDLRADQ----ELAVYS 268 (343)
T ss_pred ccccc--------ceeeeecc--CcceeEeecccccccceEEEccCCCeeeecCCC--ceeEEEeecCCc----EEeeec
Confidence 11121 35678884 455556667788899999999999998877632 445555554332 233443
Q ss_pred CcccccccCCCCCceEeccCCCEEEEee
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+.. .-+...+.||..|+.|+...
T Consensus 269 ~~~~----~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 269 HDSI----ICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred cCcc----cCCceeEEEcccccEEEeee
Confidence 2211 11445678899999887754
No 100
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.09 E-value=2.3e-09 Score=104.07 Aligned_cols=109 Identities=29% Similarity=0.326 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----------CCcc----
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----------TPFG---- 645 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----------~~~~---- 645 (706)
....-+...++...+.+ ++++||.++|+|.||.||+.++.++|..|.++++++|...... +|..
T Consensus 85 ~s~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~~~~~~~~~~pi~~~hG 163 (216)
T PF02230_consen 85 ESAERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELEDRPEALAKTPILIIHG 163 (216)
T ss_dssp HHHHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCHCCHCCCCTS-EEEEEE
T ss_pred HHHHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccccccccccCCCcEEEEec
Confidence 33444555555555544 8999999999999999999999999999999999998753211 1211
Q ss_pred -------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 646 -------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 646 -------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
+ ..++.++.|++.+.++++..|||.+|.+. .+.+..+.+||++++
T Consensus 164 ~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 164 DEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp TT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred CCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 0 23489999999999999999999999886 367888999999864
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=5.5e-09 Score=102.68 Aligned_cols=225 Identities=15% Similarity=0.231 Sum_probs=133.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....||||.++|+.-.. ...++++|+.+|+.+...... ....+.+.+|-|||..++..+++
T Consensus 271 ~V~yi~wSPDdryLlaCg~----------~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGF----------DEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecCc----------hHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC----
Confidence 6889999999999976432 234899999999988775332 11236789999999998776432
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc-eecC--CCceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA-KDFG--TPAVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~-~~lt--~~~~~~~~~~SpDG~~ 188 (706)
.+++.++++|+. .... ....+..++.++||++
T Consensus 334 ---------------------------------------------r~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 334 ---------------------------------------------RTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred ---------------------------------------------CcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 688999998833 1111 1146789999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
++.+... ..|.+++.+....+.+.... .+...+..|.||+. +.+ +..
T Consensus 369 vl~v~~d-------------~~i~l~~~e~~~dr~lise~-------------~~its~~iS~d~k~--~Lv-nL~---- 415 (519)
T KOG0293|consen 369 VLLVTVD-------------KKIRLYNREARVDRGLISEE-------------QPITSFSISKDGKL--ALV-NLQ---- 415 (519)
T ss_pred EEEEecc-------------cceeeechhhhhhhcccccc-------------CceeEEEEcCCCcE--EEE-Ecc----
Confidence 9876643 37888888765544333322 22447789999985 323 111
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccc--cccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
...+++||++ +...+++....... +-.-.|..-. +.|+..+ ...++|+++..++ ++.....+.
T Consensus 416 ------~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS----ED~kvyIWhr~sg--kll~~LsGH 481 (519)
T KOG0293|consen 416 ------DQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS----EDSKVYIWHRISG--KLLAVLSGH 481 (519)
T ss_pred ------cCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecC----CCceEEEEEccCC--ceeEeecCC
Confidence 1247888882 21111222221111 1111233222 3333332 3357999998884 444443333
Q ss_pred ccccccCCCCCceEeccCCCEEEEee
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+ .-++|+|...+..+++
T Consensus 482 s~~v------NcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 482 SKTV------NCVSWNPADPEMFASA 501 (519)
T ss_pred ccee------eEEecCCCCHHHhhcc
Confidence 2222 1266777776655554
No 102
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=8.2e-09 Score=97.67 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=81.2
Q ss_pred ccceEEEEccCC-CceecC--CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 155 TTAQLVLGSLDG-TAKDFG--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 155 ~~~~l~~~~l~g-~~~~lt--~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
+...||.++..+ ....+. ..+.+..++|||+|+++++..... +..+.+|++++..+..+....
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----------~~~v~lyd~~~~~i~~~~~~~--- 102 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----------PAKVTLYDVKGKKIFSFGTQP--- 102 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----------CcccEEEcCcccEeEeecCCC---
Confidence 457899998854 444443 335699999999999998876543 247899999866665553221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee-cccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~wspDg 310 (706)
...+.|||+|+. |+... ..+ ..+.|.+||+ . +.+.+.. .......+.|||||
T Consensus 103 ------------~n~i~wsP~G~~-l~~~g-~~n--------~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 103 ------------RNTISWSPDGRF-LVLAG-FGN--------LNGDLEFWDV---R--KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred ------------ceEEEECCCCCE-EEEEE-ccC--------CCcEEEEEEC---C--CCEEeeccccCcEEEEEEcCCC
Confidence 226799999997 55432 111 1134778888 3 3444432 23456788999999
Q ss_pred ceEEEEe
Q 005240 311 LALVNET 317 (706)
Q Consensus 311 ~~l~~~~ 317 (706)
++|+...
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999765
No 103
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.04 E-value=1.5e-10 Score=115.63 Aligned_cols=131 Identities=25% Similarity=0.294 Sum_probs=79.9
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC----eE-EEEcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----FA-VLAGPSIP 565 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~~-v~~~~~~~ 565 (706)
-|.++..++|+|++|++.+ ++|+|++.||- ..|..... .......+++.| .+ |+.++...
T Consensus 4 Lg~~~~~~VylP~~y~~~~--~~PvlylldG~------------~~~~~~~~-~~~~~~~~~~~~~~~~~iiV~i~~~~~ 68 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGYDPSK--PYPVLYLLDGQ------------SGWFRNGN-AQEALDRLIAEGKIPPMIIVVIPNGDN 68 (251)
T ss_dssp TTEEEEEEEEECTTGGTTT--TEEEEEEESHT------------THHHHHHH-HHHHHHHHHHHHTSEEEEEEEEESSST
T ss_pred cCCeEEEEEEECCCCCCCC--CCEEEEEccCC------------ccccccch-HHHHHHHHHHhCCCCceEEEEEecccc
Confidence 4678999999999985444 69999999992 01110000 011222334443 33 33333221
Q ss_pred cCCCCC---------C----CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 566 IIGEGD---------K----LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 566 ~~g~g~---------~----~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
...++. . .....+..-+.+ +.+.++.++..+++.+.+|+|+||||+.|++++.++|+.|.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~ 145 (251)
T PF00756_consen 69 SRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIA 145 (251)
T ss_dssp SSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEE
T ss_pred cccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccc
Confidence 111110 0 001122222233 445566676667777799999999999999999999999999999
Q ss_pred ccCCCCC
Q 005240 633 RSGSYNK 639 (706)
Q Consensus 633 ~~~~~d~ 639 (706)
++|.++.
T Consensus 146 ~S~~~~~ 152 (251)
T PF00756_consen 146 FSGALDP 152 (251)
T ss_dssp ESEESET
T ss_pred cCccccc
Confidence 9987543
No 104
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=99.04 E-value=3.3e-09 Score=102.52 Aligned_cols=189 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC----e
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----F 556 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~ 556 (706)
..+.+.+.+.-..+...++|+|+++.+.. +||+++..||-- |..+... ......|++.| -
T Consensus 68 ~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~-------------~~~~g~i-~~~~dsli~~g~i~pa 131 (299)
T COG2382 68 PVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQD-------------WFRSGRI-PRILDSLIAAGEIPPA 131 (299)
T ss_pred chhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHH-------------HHhcCCh-HHHHHHHHHcCCCCCc
Confidence 44555565554467888999999987655 599999999841 1111111 12233455555 3
Q ss_pred EEEEcCCCCcCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 557 AVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
+++.+++-.-.-+.+++. +..+......++ +=|+.+... -++++.+++|.|+||..+++++.++|++|.++++.
T Consensus 132 i~vgid~~d~~~R~~~~~~n~~~~~~L~~eL---lP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~ 208 (299)
T COG2382 132 ILVGIDYIDVKKRREELHCNEAYWRFLAQEL---LPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQ 208 (299)
T ss_pred eEEecCCCCHHHHHHHhcccHHHHHHHHHHh---hhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeecc
Confidence 444433322111111222 122323333322 334444422 46788999999999999999999999999999999
Q ss_pred cCCCCCCCCC-------cc-------------------------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 634 SGSYNKTLTP-------FG-------------------------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 634 ~~~~d~~~~~-------~~-------------------------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
+|.+++.... .. + ...++++.|+..++++.+..|+| ||.+.
T Consensus 209 Sps~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~G-gHdw~----- 282 (299)
T COG2382 209 SGSFWWTPLDTQPQGEVAESLKILHAIGTDERIVLTTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPG-GHDWA----- 282 (299)
T ss_pred CCccccCccccccccchhhhhhhhhccCccceEEeecCCccccccchhHHHHHHHHhcCCcceeeecCC-CCchh-----
Confidence 9988765210 00 0 12299999999999999999999 99764
Q ss_pred HHHHHHHHHHHHHHh
Q 005240 681 MHVIWETDRWLQKYC 695 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l 695 (706)
.+...+.++|...+
T Consensus 283 -~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 -WWRPALAEGLQLLL 296 (299)
T ss_pred -HhHHHHHHHHHHhh
Confidence 34445555555543
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.3e-08 Score=103.21 Aligned_cols=249 Identities=14% Similarity=0.195 Sum_probs=157.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..||+++... |+.+++..+- ...++.+.|+|+|+.||... ....+.++|.+..+..+-..+.+
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~----------~~g~v~iwD~~~~k~~~~~~~~h-- 259 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT----------SDGTVQIWDVKEQKKTRTLRGSH-- 259 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee----------cCCeEEEEehhhccccccccCCc--
Confidence 4689999988 8888887554 44699999999999999864 33567777876654333322211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+..++|. +..+...+. ...|...|+
T Consensus 260 -~~rvg~laW~--~~~lssGsr-------------------------------------------------~~~I~~~dv 287 (484)
T KOG0305|consen 260 -ASRVGSLAWN--SSVLSSGSR-------------------------------------------------DGKILNHDV 287 (484)
T ss_pred -CceeEEEecc--CceEEEecC-------------------------------------------------CCcEEEEEE
Confidence 1137788997 444444321 133444454
Q ss_pred -CC--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCc
Q 005240 165 -DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 165 -~g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~ 239 (706)
.. ....+... ..+..++|++||++++-..++ +.+.+||.... ....++.+..+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H~aA--------- 345 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEHTAA--------- 345 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecccee---------
Confidence 22 12223333 688899999999999744433 57999998533 33445444433
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeec
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
+..++|+|-.+..|+ + .+|.. ...|..||. .+++.........++.++.|++..+.|+.+...
T Consensus 346 ----VKA~awcP~q~~lLA-s---GGGs~------D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 346 ----VKALAWCPWQSGLLA-T---GGGSA------DRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred ----eeEeeeCCCccCceE-E---cCCCc------ccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 568899999888443 2 22222 124778888 566655555667889999999999999987644
Q ss_pred cccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
......||.+..-. ....+... ...+..+++||||..|+..+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~gH-------~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELLGH-------TSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred CCCcEEEEeccccc---eeeeecCC-------cceeEEEEECCCCCEEEEec
Confidence 44556777775321 11122111 11233478999999998776
No 106
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=3.4e-07 Score=93.37 Aligned_cols=93 Identities=14% Similarity=-0.058 Sum_probs=56.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~ 83 (706)
+.|++.|.+. ++ .+..++.+..... .+||||+.|+-+...-.....+.....|-++|+++.+... |.-.+..
T Consensus 27 ~~v~ViD~~~----~~--v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GR--VLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CE--EEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 6788888855 33 3334567765665 4999999996655411112223455778999999876543 3211110
Q ss_pred c--ccccccceEEecCCcEEEEE
Q 005240 84 C--LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 84 ~--~~~~~~~~~wSpDg~~l~~~ 104 (706)
- .......++.||||++|++.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred hhhccCccceEEECCCCCEEEEe
Confidence 0 00112378999999988864
No 107
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.03 E-value=8.7e-09 Score=106.83 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=86.0
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCccc--C-------------CCCCcCCCCchHHHHH
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR--G-------------SPNEFSGMTPTSSLIF 551 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~l 551 (706)
+.+.||..|..+.+.|++ |..+|+++||=. +|..... . ....+..+...++..|
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~----eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l 70 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLK----SHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENF 70 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCc----hhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHH
Confidence 456789999999998853 247999999942 2221000 0 0000000001467889
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCc------hhhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRR------------------GVADPSRIAVG 607 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~------~~~~~~~~~D~~~~~~~l~~~------------------~~id~~~i~i~ 607 (706)
+++||.|+..+-+ |+|.+... -...+..++|+...++.+.++ .+-...++.|+
T Consensus 71 ~~~G~~V~~~D~r---GHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 147 (332)
T TIGR01607 71 NKNGYSVYGLDLQ---GHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYII 147 (332)
T ss_pred HHCCCcEEEeccc---ccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEe
Confidence 9999999985554 44443211 123567788898888887652 11113579999
Q ss_pred EechHHHHHHHHHHhCCC--------ceeEEEeccCC
Q 005240 608 GHSYGAFMTAHLLAHAPH--------LFCCGIARSGS 636 (706)
Q Consensus 608 G~S~GG~~a~~~~~~~p~--------~~~a~v~~~~~ 636 (706)
||||||.+++.++.+.++ .++++|+.+|.
T Consensus 148 GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~ 184 (332)
T TIGR01607 148 GLSMGGNIALRLLELLGKSNENNDKLNIKGCISLSGM 184 (332)
T ss_pred eccCccHHHHHHHHHhccccccccccccceEEEeccc
Confidence 999999999988865432 57888877765
No 108
>PLN02872 triacylglycerol lipase
Probab=99.03 E-value=8.1e-09 Score=108.37 Aligned_cols=144 Identities=16% Similarity=0.034 Sum_probs=92.4
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
....|+..+++.||..+....+.+..-..+ ..+.|.||++||.... ...|.... .....+..|+++||.|
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~-~~~~~~Vll~HGl~~s--------s~~w~~~~-~~~sla~~La~~GydV 110 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLG-SQRGPPVLLQHGLFMA--------GDAWFLNS-PEQSLGFILADHGFDV 110 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCC-CCCCCeEEEeCccccc--------ccceeecC-cccchHHHHHhCCCCc
Confidence 568899999999998888877744321111 1124678899996432 12221111 1123455688899999
Q ss_pred EEcCCCCcCC-CCCCC--------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC---c
Q 005240 559 LAGPSIPIIG-EGDKL--------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---L 626 (706)
Q Consensus 559 ~~~~~~~~~g-~g~~~--------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~---~ 626 (706)
+.+|.||... +|... ....+-+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+ +
T Consensus 111 ~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~ 186 (395)
T PLN02872 111 WVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEM 186 (395)
T ss_pred ccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHH
Confidence 9988876531 22111 112233444589999999998652 36899999999999998555 4566 4
Q ss_pred eeEEEeccCC
Q 005240 627 FCCGIARSGS 636 (706)
Q Consensus 627 ~~a~v~~~~~ 636 (706)
++++++.+|+
T Consensus 187 v~~~~~l~P~ 196 (395)
T PLN02872 187 VEAAALLCPI 196 (395)
T ss_pred HHHHHHhcch
Confidence 6666666665
No 109
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.02 E-value=1.8e-09 Score=119.15 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=93.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CC-eEEEEcCCC-C
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RR-FAVLAGPSI-P 565 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G-~~v~~~~~~-~ 565 (706)
++|. +..-++.|....+.+ ++|+||++|||++..|+. ... ....|++ .+ ++|+.+++| +
T Consensus 75 sEdc--l~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~g~~--------~~~------~~~~~~~~~~~~~vv~~~yRlg 136 (493)
T cd00312 75 SEDC--LYLNVYTPKNTKPGN--SLPVMVWIHGGGFMFGSG--------SLY------PGDGLAREGDNVIVVSINYRLG 136 (493)
T ss_pred CCcC--CeEEEEeCCCCCCCC--CCCEEEEEcCCccccCCC--------CCC------ChHHHHhcCCCEEEEEeccccc
Confidence 4465 455588897643223 489999999998643221 111 1234454 43 899988888 7
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
..|+.........++..+.|+..|++|+.+. .+ .||+||.|+|+|+||+++.+++.. .+.+|+++|+.+|...
T Consensus 137 ~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 137 VLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 7777544332333455689999999999885 33 799999999999999999999877 3458999999998654
No 110
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.02 E-value=1.2e-07 Score=87.40 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=159.8
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.....|..+.+.+|...+-...++. .+..+...||++.|+...
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~ds----qVNrLeiTpdk~~LAaa~--------------------------------- 59 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDS----QVNRLEITPDKKDLAAAG--------------------------------- 59 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcc----ceeeEEEcCCcchhhhcc---------------------------------
Confidence 4557788888889988766544432 377788999999888652
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CCCceecC--CC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG--TP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt--~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
..+|-++|+ ++.+.++. ++ ..+..+.|--||++++-.+.+ ..+.+
T Consensus 60 -----------------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~kI 109 (311)
T KOG0315|consen 60 -----------------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVKI 109 (311)
T ss_pred -----------------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEEE
Confidence 146667788 44444432 22 578899999999999754443 37889
Q ss_pred EecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE
Q 005240 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (706)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 293 (706)
||+..-...++...... +..+...|+... |+.. ...+.|++||+. +.....+
T Consensus 110 WdlR~~~~qR~~~~~sp-------------Vn~vvlhpnQte-Lis~------------dqsg~irvWDl~--~~~c~~~ 161 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSP-------------VNTVVLHPNQTE-LISG------------DQSGNIRVWDLG--ENSCTHE 161 (311)
T ss_pred EeccCcccchhccCCCC-------------cceEEecCCcce-EEee------------cCCCcEEEEEcc--CCccccc
Confidence 99886555555544321 225566777665 4422 123358899983 2334455
Q ss_pred Ee-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC--CceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 294 LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV--APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 294 l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
|. .....+.++...|||+.++...+ ....|..++-+++. +..++.+-..... ....-.+|||+++|+..
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~----~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG----HILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc----eEEEEEECCCCcEEEee
Confidence 54 44677889999999999887642 23466666655432 2222222111111 12234579999999887
Q ss_pred eeccCCcceEEEEecCCCCCCCCCCceeeeecCCC-ceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCC
Q 005240 371 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (706)
Q Consensus 371 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~ 449 (706)
..+ .. ++.+..++- +.++.+.+... . .+.-.||.||++|+.. ++.
T Consensus 234 ssd----kt-----------------v~iwn~~~~~kle~~l~gh~r----W-------vWdc~FS~dg~YlvTa-ssd- 279 (311)
T KOG0315|consen 234 SSD----KT-----------------VKIWNTDDFFKLELVLTGHQR----W-------VWDCAFSADGEYLVTA-SSD- 279 (311)
T ss_pred cCC----ce-----------------EEEEecCCceeeEEEeecCCc----e-------EEeeeeccCccEEEec-CCC-
Confidence 532 21 222222222 22222222110 0 2456899999776654 444
Q ss_pred CCcEEEEEECCCCceeEe
Q 005240 450 EITQYHILSWPLKKSSQI 467 (706)
Q Consensus 450 ~p~~v~~~~~~~~~~~~l 467 (706)
....+|+++.++..+.
T Consensus 280 --~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 280 --HTARLWDLSAGKEVRQ 295 (311)
T ss_pred --CceeecccccCceeee
Confidence 3466888888775544
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=3.1e-08 Score=99.00 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=152.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..+.|..++. ..-..|+++- ....+....|+|+|+..+|++. .+.-+|.+|+++.+..++....+.
T Consensus 235 ~~lrifqvDG----k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~---------rrky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 235 GTLRIFQVDG----KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG---------RRKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred CcEEEEEecC----ccChhheeeeeccCccceeeecCCCceEEEecc---------cceEEEEeeccccccccccCCCCc
Confidence 3456666644 2222333321 2224667899999996666653 346799999999988777543322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
-...+..|.-|+|+.+|++... .+.|+++.
T Consensus 302 -e~~~~e~FeVShd~~fia~~G~-------------------------------------------------~G~I~lLh 331 (514)
T KOG2055|consen 302 -EEKSMERFEVSHDSNFIAIAGN-------------------------------------------------NGHIHLLH 331 (514)
T ss_pred -ccchhheeEecCCCCeEEEccc-------------------------------------------------CceEEeeh
Confidence 1223668899999998887632 26788887
Q ss_pred c-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 L-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
. +++ ...+--.+.+..+.||.||+.|+..... .+||+||+............+..
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCcc----------
Confidence 7 443 2223223688899999999998766543 38999999855433322222221
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCC-CCCCCCceEEee---cccccccceecCCCceEEEEe
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHK---LDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~~---~~~~~~~~~wspDg~~l~~~~ 317 (706)
+-..++-|++|+. |+.- .+ ++.+-++|.+ -+.+..++.+.. ....+.+++|++|++.|+..+
T Consensus 389 -~gts~~~S~ng~y-lA~G--S~----------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 389 -HGTSLCISLNGSY-LATG--SD----------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred -ceeeeeecCCCce-EEec--cC----------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 1125677888874 4321 12 2223344421 134556666543 356788999999999888876
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCC--CCCceEeccCCCEEEEee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP--GSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~ 371 (706)
..... .|-++.+.+- ...-.++..+ .+ ....+.|||.|.++++..
T Consensus 455 ~~~kn--alrLVHvPS~----TVFsNfP~~n---~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKN--ALRLVHVPSC----TVFSNFPTSN---TKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hcccc--ceEEEeccce----eeeccCCCCC---CcccceEEEEecCCCceEEeec
Confidence 44333 3444544441 1221111111 11 122467899999988864
No 112
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.02 E-value=1.6e-09 Score=104.19 Aligned_cols=111 Identities=23% Similarity=0.171 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-----------CCC---c------
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-----------LTP---F------ 644 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~-----------~~~---~------ 644 (706)
-+..|++||++++.+++++|||+|.|.||.+|+.++++.| .++|+|+.+|..-.. ..| .
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4568999999999999999999999999999999999996 999999999752100 000 0
Q ss_pred --------------------------------------------cch----HHHHHHHHHhCCCc--EEEEEeCCCCccC
Q 005240 645 --------------------------------------------GFQ----AERFFDALKGHGAL--SRLVLLPFEHHVY 674 (706)
Q Consensus 645 --------------------------------------------~~~----~~~~~~~l~~~~~~--~~~~~~~~~~H~~ 674 (706)
.+. .+++.+.|++++.+ ++++.||++||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 001 11667788888865 8899999999987
Q ss_pred CCc---------------------------ccHHHHHHHHHHHHHHHhc
Q 005240 675 AAR---------------------------ENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 675 ~~~---------------------------~~~~~~~~~~~~f~~~~l~ 696 (706)
.-+ ....+.+.++++||++||.
T Consensus 164 ~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 164 EPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp -STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 421 0246889999999999985
No 113
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.99 E-value=1.3e-07 Score=101.94 Aligned_cols=267 Identities=18% Similarity=0.131 Sum_probs=145.5
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
...+||||++|||+.+. .++....|+++|+++|+...-.. .. .....+.|++||+.|+|..........
T Consensus 128 ~~~~Spdg~~la~~~s~-----~G~e~~~l~v~Dl~tg~~l~d~i-~~----~~~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSD-----GGSEWYTLRVFDLETGKFLPDGI-EN----PKFSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEETTTSSEEEEEEEE-----TTSSEEEEEEEETTTTEEEEEEE-EE----EESEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeECCCCCEEEEEecC-----CCCceEEEEEEECCCCcCcCCcc-cc----cccceEEEeCCCCEEEEEEeCcccccc-
Confidence 57899999999999863 23566889999999995433210 11 012248999999999888643221100
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC---ce-EeeeeeCCCCc
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP---AV-YTAVEPSPDQK 187 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~---~~-~~~~~~SpDG~ 187 (706)
. .....+||++.+ ++ +...|.+. .. ...+.+|+||+
T Consensus 197 ------~-------------------------------~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 ------D-------------------------------SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ------C-------------------------------CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred ------c-------------------------------CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0 001268999998 44 22344433 23 56788999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCC-----eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
+|++.+..... .+.+++.++... +.+.|..... +...+ ....|.. +++..+
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~-~yi~Tn 295 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDR-LYILTN 295 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTE-EEEEE-
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCE-EEEeeC
Confidence 99887766431 268999999864 4555543221 11111 1122444 666655
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCC---ce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCC-CCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK---PE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG-SKDVA 337 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~-~~~~~ 337 (706)
.+. .+..|+.++++ ... .+ .+........--.++..+.+|++... .++..+|.++++. +. .
T Consensus 296 ~~a--------~~~~l~~~~l~---~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~-~~~~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 296 DDA--------PNGRLVAVDLA---DPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR-ENGSSRLRVYDLDDGK--E 361 (414)
T ss_dssp TT---------TT-EEEEEETT---STSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE-ETTEEEEEEEETT-TE--E
T ss_pred CCC--------CCcEEEEeccc---ccccccceeEEcCCCCceeEEEEEEECCEEEEEEE-ECCccEEEEEECCCCc--E
Confidence 322 23357788873 332 22 34444332222334445556666543 4467889999999 52 2
Q ss_pred ceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
...+.-.....+ ......+++..+.+.... . -.-+.+|.+|+++|+.+.+
T Consensus 362 ~~~~~~p~~g~v------~~~~~~~~~~~~~~~~ss--------------~---~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 362 SREIPLPEAGSV------SGVSGDFDSDELRFSYSS--------------F---TTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEESSSSSEE------EEEES-TT-SEEEEEEEE--------------T---TEEEEEEEEETTTTCEEEE
T ss_pred EeeecCCcceEE------eccCCCCCCCEEEEEEeC--------------C---CCCCEEEEEECCCCCEEEE
Confidence 222211111111 112234556666555421 1 1123688999999987665
No 114
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.99 E-value=4.9e-08 Score=91.56 Aligned_cols=255 Identities=18% Similarity=0.146 Sum_probs=147.5
Q ss_pred eeEeecCCCC-CCC-CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 7 IGIHRLLPDD-SLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~-~~g-~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
|.+.+|..|+ +-| ..++++++ ...+.....||||++..-. .....|.++|+++|+.++...+...
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GH--sH~v~dv~~s~dg~~alS~----------swD~~lrlWDl~~g~~t~~f~GH~~- 106 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGH--SHFVSDVVLSSDGNFALSA----------SWDGTLRLWDLATGESTRRFVGHTK- 106 (315)
T ss_pred EEEEEeccCccccCceeeeeecc--ceEecceEEccCCceEEec----------cccceEEEEEecCCcEEEEEEecCC-
Confidence 4455555531 112 23444432 2368899999999877443 2336788889999887776544432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+-++++|||.+.|+..+.+ ..|-+++.
T Consensus 107 ---dVlsva~s~dn~qivSGSrD-------------------------------------------------kTiklwnt 134 (315)
T KOG0279|consen 107 ---DVLSVAFSTDNRQIVSGSRD-------------------------------------------------KTIKLWNT 134 (315)
T ss_pred ---ceEEEEecCCCceeecCCCc-------------------------------------------------ceeeeeee
Confidence 27789999999998865431 35666676
Q ss_pred CCC-ceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 DGT-AKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~g~-~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
-|. ...+... +-+..+.|||.....++.+... ...+.+||+++-+++.-.-+ ..
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----------DktvKvWnl~~~~l~~~~~g--h~--------- 192 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----------DKTVKVWNLRNCQLRTTFIG--HS--------- 192 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----------CceEEEEccCCcchhhcccc--cc---------
Confidence 442 2222222 5678999999964443333322 24799999997665442222 11
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
.....+.+||||.. ++ .++.. ..+++||++ ++.....+ .....+.+..|+|+--.|....
T Consensus 193 -~~v~t~~vSpDGsl-ca-----sGgkd-------g~~~LwdL~--~~k~lysl-~a~~~v~sl~fspnrywL~~at--- 252 (315)
T KOG0279|consen 193 -GYVNTVTVSPDGSL-CA-----SGGKD-------GEAMLWDLN--EGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT--- 252 (315)
T ss_pred -ccEEEEEECCCCCE-Ee-----cCCCC-------ceEEEEEcc--CCceeEec-cCCCeEeeEEecCCceeEeecc---
Confidence 11337799999985 32 12322 258889984 33332222 3456778899999966665432
Q ss_pred ccceEEEEEcCCCCCCCceee-ecCccc-ccccCCCCCceEeccCCCEEEEee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVL-FDRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l-~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...|-+.|++++. ....| .+.... .....|.-..++||+||.+|+...
T Consensus 253 --~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 --ATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred --CCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1125566666632 11111 111100 111123334588999999987654
No 115
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.98 E-value=4.1e-07 Score=94.98 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=102.9
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
+.|+|+.. .+...|.++|.++.+.......... ......+||||+++|....
T Consensus 5 ~~l~~V~~--------~~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r---------------- 56 (369)
T PF02239_consen 5 GNLFYVVE--------RGSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR---------------- 56 (369)
T ss_dssp GGEEEEEE--------GGGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET----------------
T ss_pred ccEEEEEe--------cCCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC----------------
Confidence 34556554 3457999999888764433221221 0234678999999887632
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
.+.|.++|+ ++ ...++..+....++++||||++|+.....
T Consensus 57 ---------------------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----- 98 (369)
T PF02239_consen 57 ---------------------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----- 98 (369)
T ss_dssp ---------------------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE-----
T ss_pred ---------------------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC-----
Confidence 157888999 55 45566666677899999999999766544
Q ss_pred ccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 201 KVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
+..+.++|..+.++ +.+.........+ ......+.-+|++.. .+ + +.. +.+.++
T Consensus 99 -------~~~v~v~D~~tle~v~~I~~~~~~~~~~------~~Rv~aIv~s~~~~~-fV-v-~lk---------d~~~I~ 153 (369)
T PF02239_consen 99 -------PGTVSVIDAETLEPVKTIPTGGMPVDGP------ESRVAAIVASPGRPE-FV-V-NLK---------DTGEIW 153 (369)
T ss_dssp -------TTEEEEEETTT--EEEEEE--EE-TTTS---------EEEEEE-SSSSE-EE-E-EET---------TTTEEE
T ss_pred -------CCceeEeccccccceeeccccccccccc------CCCceeEEecCCCCE-EE-E-EEc---------cCCeEE
Confidence 35889999876543 4443321111000 011224556677664 22 2 111 234578
Q ss_pred eecCCCCCCCCceE--EeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 280 TQPAEPAEGEKPEI--LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 280 ~~d~~~~~~~~~~~--l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
++|.. ..+... .........+..|+||+++++...... ..|-.+|+.+
T Consensus 154 vVdy~---d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~ 203 (369)
T PF02239_consen 154 VVDYS---DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKT 203 (369)
T ss_dssp EEETT---TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTT
T ss_pred EEEec---cccccceeeecccccccccccCcccceeeeccccc---ceeEEEeecc
Confidence 88862 222222 223345566789999999987754322 2455555554
No 116
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.97 E-value=1.6e-06 Score=88.50 Aligned_cols=291 Identities=12% Similarity=0.048 Sum_probs=147.7
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec-CCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
.+++++|.++++.......... ... ..||||+.||.... -.+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~~---------------------------- 72 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIAR---------------------------- 72 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecccccccc----------------------------
Confidence 7999999998875443222221 233 49999999887632 011110
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC--------ceEeeeeeCCCCcEEEEEeeccCcccccccccccce
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK 210 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~ 210 (706)
......|-++|+ ++ ....+.-+ .....+++|||||+|++..... ...
T Consensus 73 ------------G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~~ 129 (352)
T TIGR02658 73 ------------GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SPA 129 (352)
T ss_pred ------------CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CCE
Confidence 002256777787 55 33344322 2344889999999998655332 257
Q ss_pred EEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC
Q 005240 211 VQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (706)
Q Consensus 211 i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 289 (706)
+-++|+.++++.. +.-.......+. .....+..+.||+. +.+....++. . ...
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t------~e~~~~~~~~Dg~~-~~v~~d~~g~-~----------~~~-------- 183 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPT------ANDTFFMHCRDGSL-AKVGYGTKGN-P----------KIK-------- 183 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEe------cCCccEEEeecCce-EEEEecCCCc-e----------EEe--------
Confidence 8999999766543 332211110010 00113344566654 3222111111 0 000
Q ss_pred CceEEeec--ccccccceecC-CCceEEEEeeccccceEEEEEcCCCCCCCceeeecC-ccccc--ccCCCCCc-eEecc
Q 005240 290 KPEILHKL--DLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENV--YSDPGSPM-MTRTS 362 (706)
Q Consensus 290 ~~~~l~~~--~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~--~~~~~~~~-~~~s~ 362 (706)
...++.. ..-...|.+++ ||++++.+. + ..|+.+|+.+.+......++. ..... .-.|+..+ +++++
T Consensus 184 -~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 184 -PTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred -eeeeecCCccccccCCceEcCCCcEEEEec-C----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 0011111 11223345566 787666543 2 579999987643111111110 00000 11344432 55688
Q ss_pred CCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEE
Q 005240 363 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442 (706)
Q Consensus 363 dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~ 442 (706)
||+++++.... + +.|.+. ..-.+++.+|.++++..+.+.... ..+.+.+|||++.++
T Consensus 258 dg~~lyV~~~~---~-------~~~thk-~~~~~V~ViD~~t~kvi~~i~vG~------------~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 ARDRIYLLADQ---R-------AKWTHK-TASRFLFVVDAKTGKRLRKIELGH------------EIDSINVSQDAKPLL 314 (352)
T ss_pred CCCEEEEEecC---C-------cccccc-CCCCEEEEEECCCCeEEEEEeCCC------------ceeeEEECCCCCeEE
Confidence 88887774311 0 011111 122379999999988765544332 123578999999566
Q ss_pred EEEecCCCCcEEEEEECCCCceeE
Q 005240 443 TSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 443 ~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
|+.+.. ...|.++|..+++..+
T Consensus 315 yvtn~~--s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 315 YALSTG--DKTLYIFDAETGKELS 336 (352)
T ss_pred EEeCCC--CCcEEEEECcCCeEEe
Confidence 554432 3448899988875443
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.97 E-value=3.7e-08 Score=108.59 Aligned_cols=155 Identities=20% Similarity=0.288 Sum_probs=94.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc------C--CCc--------eeecccCCCccccccccceEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGE--------AKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~------~--~g~--------~~~lt~~~~~~~~~~~~~~~wS 95 (706)
.+..++|||||++||+.++ +....||-+.. - +|. ...+..+. ...+.++.||
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H----~~DV~Dv~Ws 138 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH----DSDVLDVNWS 138 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecC----CCccceeccC
Confidence 5778999999999999764 44455676652 0 011 11111111 1127789999
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCC
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT 173 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~ 173 (706)
||+.+|+..+.+ ..+.+++. +.+ .+.+-.
T Consensus 139 p~~~~lvS~s~D-------------------------------------------------nsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 139 PDDSLLVSVSLD-------------------------------------------------NSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred CCccEEEEeccc-------------------------------------------------ceEEEEccccceeeeeeec
Confidence 999998876421 45666676 333 333333
Q ss_pred C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
. ..+-.+.|.|-|++++-.+.++ .|.+|+... +-.+.++ .+..+..-. ...+.++|||
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It-~pf~~~~~~------T~f~RlSWSP 229 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSIT-KPFEESPLT------TFFLRLSWSP 229 (942)
T ss_pred ccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeec-cchhhCCCc------ceeeecccCC
Confidence 3 6778999999999999777654 688888653 3333333 322211100 1134789999
Q ss_pred CCCceEEEEEeccCCCC
Q 005240 252 DKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~ 268 (706)
||.. |+...+-+++..
T Consensus 230 DG~~-las~nA~n~~~~ 245 (942)
T KOG0973|consen 230 DGHH-LASPNAVNGGKS 245 (942)
T ss_pred CcCe-ecchhhccCCcc
Confidence 9998 765544444443
No 118
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.97 E-value=6.5e-09 Score=100.02 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred EEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc
Q 005240 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 575 (706)
Q Consensus 496 ~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~ 575 (706)
+-.++.|.. .+.||+||+.||-. +..+ + +....+.+++.||+|+.++.....+.+
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~~~s---~---Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------LINS---W---YSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------CCHH---H---HHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456788876 45699999999831 1111 1 234567789999999997743322211
Q ss_pred hhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccCCC
Q 005240 576 DRFVEQLVSSAEAAVEEVVRR--G------VADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSY 637 (706)
Q Consensus 576 ~~~~~~~~~D~~~~~~~l~~~--~------~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~~~ 637 (706)
.....+++.+.++|+.+. . .+|-+||+|+|||.||-++..++... +.+|+|++...|+-
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 133466777888898762 1 15888999999999999999998887 45899999999986
No 119
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.95 E-value=4.2e-07 Score=91.65 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=144.5
Q ss_pred cceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCC
Q 005240 5 TGIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~ 82 (706)
..|.++++.. ++ ...+.. ....+..+.|+|+++.|+.... ...|++++..+++. ..+.....
T Consensus 31 g~i~i~~~~~----~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 31 GTIKVWDLET----GELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred cEEEEEEeeC----CCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC
Confidence 3577888865 43 233321 2224568999999998887642 36788888877543 33332222
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+..+.|+|+++.|+.... .+.|.++
T Consensus 95 -----~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~ 120 (289)
T cd00200 95 -----YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVW 120 (289)
T ss_pred -----cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEE
Confidence 2678899999876665421 1567777
Q ss_pred ccC-CC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 163 SLD-GT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 163 ~l~-g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
++. ++ ...+... ..+..+.|+|+++.|+..... ..+.+|++...+.........
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~~---------- 177 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-------------GTIKLWDLRTGKCVATLTGHT---------- 177 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-------------CcEEEEEccccccceeEecCc----------
Confidence 874 53 3333333 568899999998877655422 378999998544322222110
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
.....+.|+|+++. |+.... .+.+.++|. ..++... +......+..+.|+|++..++...
T Consensus 178 --~~i~~~~~~~~~~~-l~~~~~------------~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 238 (289)
T cd00200 178 --GEVNSVAFSPDGEK-LLSSSS------------DGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS- 238 (289)
T ss_pred --cccceEEECCCcCE-EEEecC------------CCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc-
Confidence 12447899999976 554421 124778887 4444333 334556788899999976666543
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
....|+++++.++ +........ ......+.|+++++.++...
T Consensus 239 ---~~~~i~i~~~~~~--~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 ---EDGTIRVWDLRTG--ECVQTLSGH------TNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred ---CCCcEEEEEcCCc--eeEEEcccc------CCcEEEEEECCCCCEEEEec
Confidence 1234677777653 222222211 01123467889988776653
No 120
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.95 E-value=2.6e-08 Score=94.23 Aligned_cols=150 Identities=17% Similarity=0.268 Sum_probs=91.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
++.+..|..++. ++.+...+. +.....+..++|||+|+++|.+.. .....+.++|+++.....+ +.
T Consensus 35 ~~~~~~l~~~~~--~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g--------~~~~~v~lyd~~~~~i~~~---~~ 100 (194)
T PF08662_consen 35 YYGEFELFYLNE--KNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYG--------SMPAKVTLYDVKGKKIFSF---GT 100 (194)
T ss_pred EEeeEEEEEEec--CCCccceee-ccCCCceEEEEECcCCCEEEEEEc--------cCCcccEEEcCcccEeEee---cC
Confidence 344455555544 335555554 333335899999999999988753 2223677777764443433 22
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ....+.|||+|++|++..-. . ..+.|..+
T Consensus 101 ~----~~n~i~wsP~G~~l~~~g~~--n--------------------------------------------~~G~l~~w 130 (194)
T PF08662_consen 101 Q----PRNTISWSPDGRFLVLAGFG--N--------------------------------------------LNGDLEFW 130 (194)
T ss_pred C----CceEEEECCCCCEEEEEEcc--C--------------------------------------------CCcEEEEE
Confidence 1 14578999999998886421 0 11567778
Q ss_pred ccCC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE
Q 005240 163 SLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (706)
Q Consensus 163 ~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (706)
|... +............++|||||++|+...... ..+..+.+.+|+..|..+.+
T Consensus 131 d~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~-------r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 131 DVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP-------RLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc-------ceeccccEEEEEecCeEeEe
Confidence 8853 222222224677999999999998765431 11123678888888776544
No 121
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.95 E-value=1.4e-08 Score=91.88 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=74.8
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+++.|+++||.|+..+.+ +.+.. ....++..+++++.+.. .|+++|+++|+|+||.+++.++.+. .
T Consensus 17 ~~~~~l~~~G~~v~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~i~l~G~S~Gg~~a~~~~~~~-~ 83 (145)
T PF12695_consen 17 PLAEALAEQGYAVVAFDYP---GHGDS--------DGADAVERVLADIRAGY-PDPDRIILIGHSMGGAIAANLAARN-P 83 (145)
T ss_dssp HHHHHHHHTTEEEEEESCT---TSTTS--------HHSHHHHHHHHHHHHHH-CTCCEEEEEEETHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHCCCEEEEEecC---CCCcc--------chhHHHHHHHHHHHhhc-CCCCcEEEEEEccCcHHHHHHhhhc-c
Confidence 4567889999999996664 33332 11124445555543322 2889999999999999999999999 8
Q ss_pred ceeEEEeccCCCCCC-----CCCc---------cchHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 005240 626 LFCCGIARSGSYNKT-----LTPF---------GFQAERFFDALKGHGALSRLVLLPFEHHV 673 (706)
Q Consensus 626 ~~~a~v~~~~~~d~~-----~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 673 (706)
.++++|+++|..+.. ..|. ....+...+..++...+.+++++||++|.
T Consensus 84 ~v~~~v~~~~~~~~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 84 RVKAVVLLSPYPDSEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TESEEEEESESSGCHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred ceeEEEEecCccchhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 999999999943211 0111 11122222223333467899999999994
No 122
>COG0400 Predicted esterase [General function prediction only]
Probab=98.93 E-value=4.1e-08 Score=92.44 Aligned_cols=108 Identities=25% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCc---------
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPF--------- 644 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~--------- 644 (706)
....+.+.++.+.++.-+|.+|+.+.|+|.|+.+++.++.+.|+.|+++++++|.+-... .|.
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~~~~~~~~pill~hG~~Dp 158 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPELLPDLAGTPILLSHGTEDP 158 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCccccccCCCeEEEeccCcCC
Confidence 345556666666666779999999999999999999999999999999999999764332 111
Q ss_pred ---cchHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 645 ---GFQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 645 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.....++.+.|++.|.+++...++ .+|.+. .+.++.+.+|+.+.+
T Consensus 159 vvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~~ 206 (207)
T COG0400 159 VVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANTL 206 (207)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhcc
Confidence 013349999999999999999999 799986 367788888988754
No 123
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.92 E-value=1.4e-08 Score=100.31 Aligned_cols=213 Identities=16% Similarity=0.190 Sum_probs=130.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
++.+++++. ++.|..+... .++..++|.|+|++|+.++. +....|| |+.+++...+-.+..
T Consensus 242 tvklw~~~~------e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGHs-- 303 (459)
T KOG0272|consen 242 TVKLWKLSQ------ETPLQDLEGHLARVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGHS-- 303 (459)
T ss_pred ceeeeccCC------CcchhhhhcchhhheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhcccc--
Confidence 455556544 2444333322 47999999999999998775 4446665 666665444433322
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.++.+++|.|||..++....+ ..++|| |+
T Consensus 304 --~~v~~iaf~~DGSL~~tGGlD-----------------------------------------------~~~RvW--Dl 332 (459)
T KOG0272|consen 304 --KGVFSIAFQPDGSLAATGGLD-----------------------------------------------SLGRVW--DL 332 (459)
T ss_pred --cccceeEecCCCceeeccCcc-----------------------------------------------chhhee--ec
Confidence 247899999999976543211 114554 77
Q ss_pred -CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 165 -DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 -~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+|....+..+ ..+..++|||+|-.|+-.+.+ +.+.+||+..... +...+...
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH~---------- 387 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAHS---------- 387 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceeccccc----------
Confidence 6744443333 678899999999988755433 4788999974432 22222211
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
+-+..+.|+|+....|+-.. .+. .+.+|.-. .....+.|..+...+.++..|+||..|+..+.+
T Consensus 388 nlVS~Vk~~p~~g~fL~Tas----yD~--------t~kiWs~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D-- 451 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTAS----YDN--------TVKIWSTR--TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD-- 451 (459)
T ss_pred chhhheEecccCCeEEEEcc----cCc--------ceeeecCC--CcccchhhcCCccceEEEEeccCCceEEEeccC--
Confidence 11346789996655344221 111 23344431 334556778889999999999999999876532
Q ss_pred cceEEEE
Q 005240 322 SQTRTWL 328 (706)
Q Consensus 322 ~~~~l~~ 328 (706)
..-+||.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 4456663
No 124
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.89 E-value=6.6e-09 Score=106.99 Aligned_cols=131 Identities=23% Similarity=0.209 Sum_probs=89.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-eEEEEcCCC-CcC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PII 567 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~~-~~~ 567 (706)
+|...+ =|+.|+ .... +.||+||+|||.+..|+.+.. ....+.|+++| ++|+..|+| |--
T Consensus 77 EDCL~L--NIwaP~-~~a~---~~PVmV~IHGG~y~~Gs~s~~------------~ydgs~La~~g~vVvVSvNYRLG~l 138 (491)
T COG2272 77 EDCLYL--NIWAPE-VPAE---KLPVMVYIHGGGYIMGSGSEP------------LYDGSALAARGDVVVVSVNYRLGAL 138 (491)
T ss_pred ccceeE--EeeccC-CCCC---CCcEEEEEeccccccCCCccc------------ccChHHHHhcCCEEEEEeCcccccc
Confidence 466444 488898 2222 389999999997754332211 12346788888 888887776 444
Q ss_pred CCCCC--CC--chhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 568 GEGDK--LP--NDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~--~~--~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
|+=.- +. ....-+.-+.|++.|++|+.+. .| -||++|.|+|.|.|++.++.+++. ....|+-+|+.+|..-
T Consensus 139 GfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 139 GFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred eeeehhhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 43110 00 0111224589999999999985 34 799999999999999999888765 2237888888888665
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.5e-06 Score=80.90 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=153.0
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
...+..+.||+||..++..+. ...|.++|...|+..+....+. +++....+.-....+...+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk-- 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTK-- 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCC--
Confidence 336888999999999988542 2477788888777666544432 235666676555444444320
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC--ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~--~~~~~~~~SpDG 186 (706)
....|-.+++ +.+-.+...+ ..+..++.||-+
T Consensus 78 ---------------------------------------------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~ 112 (311)
T KOG1446|consen 78 ---------------------------------------------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD 112 (311)
T ss_pred ---------------------------------------------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCC
Confidence 0145666777 5655555555 678899999988
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
...+-.+.+ ..|++||+...+-+-+....+ ..-.+|.|.| |+|+....+
T Consensus 113 d~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~G---LifA~~~~~- 161 (311)
T KOG1446|consen 113 DTFLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEG---LIFALANGS- 161 (311)
T ss_pred CeEEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCC---cEEEEecCC-
Confidence 665544333 489999998555444333321 1145899998 555543221
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEe---ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
..|.+.|+.-++.|--+... ........+.|||||+.|+... ....++++|.=.|. ...-+.
T Consensus 162 ---------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G~--~~~tfs 226 (311)
T KOG1446|consen 162 ---------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDGT--VKSTFS 226 (311)
T ss_pred ---------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCCc--EeeeEe
Confidence 24777777544444434332 2245677899999999999865 34468899987743 222221
Q ss_pred CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
.....- ..| .+-.++|||+.|+..++. + +|..+++++|+....+..
T Consensus 227 ~~~~~~-~~~--~~a~ftPds~Fvl~gs~d----g-----------------~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 227 GYPNAG-NLP--LSATFTPDSKFVLSGSDD----G-----------------TIHVWNLETGKKVAVLRG 272 (311)
T ss_pred eccCCC-Ccc--eeEEECCCCcEEEEecCC----C-----------------cEEEEEcCCCcEeeEecC
Confidence 111100 001 135579999998877631 1 355566678876666655
No 126
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=9.4e-07 Score=90.54 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=164.2
Q ss_pred CcccceeeCCCCCeEEEEeecccc-ccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
..+....|||.-++|+.-+..+.. ..+.+...+|.++|..+|...+-......... ....+.||-|++++|....
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~-~WP~frWS~DdKy~Arm~~--- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL-KWPIFRWSHDDKYFARMTG--- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc-ccceEEeccCCceeEEecc---
Confidence 357778899999988765542211 11124668899999999976654322111000 1346799999999886531
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCCceEeeeeeCCCCcEE
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i 189 (706)
.. +.+ | ....+.+++ ++.-.+ ..+..+.|||.+..|
T Consensus 326 ~s------------isI-----------y----------------Etpsf~lld--~Kslki---~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 326 NS------------ISI-----------Y----------------ETPSFMLLD--KKSLKI---SGIRDFSWSPTSNLL 361 (698)
T ss_pred ce------------EEE-----------E----------------ecCceeeec--ccccCC---ccccCcccCCCcceE
Confidence 00 000 0 001122222 222222 367789999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
||-....... +.++-+..+.++.. |...-.. .....+.|..+|.. |.+-.+.-....
T Consensus 362 AYwtpe~~~~--------parvtL~evPs~~~iRt~nlfn-------------VsDckLhWQk~gdy-LcvkvdR~tK~~ 419 (698)
T KOG2314|consen 362 AYWTPETNNI--------PARVTLMEVPSKREIRTKNLFN-------------VSDCKLHWQKSGDY-LCVKVDRHTKSK 419 (698)
T ss_pred EEEcccccCC--------cceEEEEecCccceeeecccee-------------eeccEEEeccCCcE-EEEEEEeecccc
Confidence 9987654322 35666666664432 2110011 01226789999998 655443311111
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee-ccccceEEEEEcCCCCCCCceee--ecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW-YKTSQTRTWLVCPGSKDVAPRVL--FDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~l~~~d~~~~~~~~~~l--~~~~ 345 (706)
......+-.||.++- -.-+.........+-.++|-|.|..++..+. ......++|.+.... +++.++ ++..
T Consensus 420 ~~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDKK 493 (698)
T ss_pred ccceEeeEEEEEeec----cCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhccc
Confidence 001111124555543 1222333345667788999999988876653 223455677776544 345554 2222
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhh
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 425 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 425 (706)
.. ..+.|||.|++++...... .+..|.-+|.+-...+.+-..+.
T Consensus 494 ~~--------N~vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~eh---------- 537 (698)
T KOG2314|consen 494 FA--------NTVFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPEH---------- 537 (698)
T ss_pred cc--------ceEEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCccc----------
Confidence 11 1367999999998876431 11235556654322222211111
Q ss_pred ccCCCceecccCCCEEEEEEecC
Q 005240 426 VFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 426 ~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.......|.|.|++++...+..
T Consensus 538 -~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 -FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -cccccceECCCCCEEEEeeehh
Confidence 1233578999999888665444
No 127
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.88 E-value=5.1e-08 Score=92.09 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=125.5
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
..+.+..++..|..+....+.|+.. ..++|+|.||.-... + ....+...|.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dl------------g---q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADL------------G---QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccch------------H---HHHHHHHHHhhcccceEE
Confidence 5566777777788888888888763 258999999952110 0 00122233433 688998
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
. ..++|||.+.... .-....+|+.++.+||++..- .+++|++||+|+|..-++.++++.| .+|+|+.+|+.+.
T Consensus 93 ~---~DYSGyG~S~G~p-sE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKP-SERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCc-ccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 8 4555777775432 223578999999999999754 6789999999999999999999997 9999999998652
Q ss_pred C--CCC-----cc---c---------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 005240 640 T--LTP-----FG---F---------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682 (706)
Q Consensus 640 ~--~~~-----~~---~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 682 (706)
. ..| +. | .+.+++++++.. ++-++..|++|.... ...+
T Consensus 166 ~rv~~~~~~~~~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~--~~~~ 240 (258)
T KOG1552|consen 166 MRVAFPDTKTTYCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE--LYPE 240 (258)
T ss_pred hhhhccCcceEEeeccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc--cCHH
Confidence 2 111 00 0 122888887764 566788889997542 2346
Q ss_pred HHHHHHHHHHHHh
Q 005240 683 VIWETDRWLQKYC 695 (706)
Q Consensus 683 ~~~~~~~f~~~~l 695 (706)
..+.+.+|+..-+
T Consensus 241 yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 241 YIEHLRRFISSVL 253 (258)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777776543
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=4.7e-07 Score=86.48 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=105.2
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
++-..-.+++|+-.+.. ..|.+|++.|..+..+-..... ....+.||||+. |+
T Consensus 192 ~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRF-ia 244 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRF-IA 244 (420)
T ss_pred EEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeCCCCcE-EE
Confidence 45566677777644433 4899999997655544322111 225589999997 55
Q ss_pred EEEeccCCCCccccCccceeeeecCCCC-CCCC---ceE---EeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPA-EGEK---PEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~---~~~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
...... .+++|.+ -+ ..|. ..+ |..+...+..++||+++.+++..+ +++.-+||-.|+
T Consensus 245 ~~gFTp------------DVkVwE~-~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtdV 309 (420)
T KOG2096|consen 245 VSGFTP------------DVKVWEP-IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTDV 309 (420)
T ss_pred EecCCC------------CceEEEE-EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeeccc
Confidence 332211 1222222 00 1232 222 344566788889999999998875 335667888776
Q ss_pred CCCC-CCceeeecCc--ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCcee
Q 005240 332 GSKD-VAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 408 (706)
Q Consensus 332 ~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~ 408 (706)
.=.. ..|..|-..+ .......| ..+..||.|+.++.+... .|..+...+|+..
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDY 365 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccc
Confidence 4321 1244442221 11111111 146679999998887511 1344444455421
Q ss_pred eeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecC
Q 005240 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.- .|.+ ....+...+|++||++++.+....
T Consensus 366 ~~--------~e~~--h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 366 PE--------LEDI--HSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred hh--------HHHh--hcCceeeEEecCCCcEEeeeccee
Confidence 11 1111 011233679999999999876543
No 129
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.84 E-value=3.9e-07 Score=84.83 Aligned_cols=204 Identities=20% Similarity=0.185 Sum_probs=117.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|-+.++-. ++-...+.... ......|||||+++++..+ ...|-.+|..+-+...--...
T Consensus 88 ~ir~wd~r~----~k~~~~i~~~~--eni~i~wsp~g~~~~~~~k----------dD~it~id~r~~~~~~~~~~~---- 147 (313)
T KOG1407|consen 88 TIRIWDIRS----GKCTARIETKG--ENINITWSPDGEYIAVGNK----------DDRITFIDARTYKIVNEEQFK---- 147 (313)
T ss_pred eEEEEEecc----CcEEEEeeccC--cceEEEEcCCCCEEEEecC----------cccEEEEEecccceeehhccc----
Confidence 456666655 55555442222 3678999999999999742 356666776544322211111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
..+....|+-++.. +|..... +.+-++..-
T Consensus 148 -~e~ne~~w~~~nd~-Fflt~Gl------------------------------------------------G~v~ILsyp 177 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDL-FFLTNGL------------------------------------------------GCVEILSYP 177 (313)
T ss_pred -ceeeeeeecCCCCE-EEEecCC------------------------------------------------ceEEEEecc
Confidence 12557789966664 5543210 122222211
Q ss_pred C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCcccCccC
Q 005240 166 G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 166 g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
. ..+.|... ..=-.++|+|||++++..+.+ ..+-+||++. -.+|.++..+.
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsAD-------------AlvSLWD~~ELiC~R~isRldw------------ 232 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD-------------ALVSLWDVDELICERCISRLDW------------ 232 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeecccc-------------ceeeccChhHhhhheeeccccC------------
Confidence 1 12223333 233478899999999876644 3678899873 23455555543
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
.++.++||.||+. |+-. ..+. .|=+.++ ++|....-....+....++|.|....|+|+-++++
T Consensus 233 -pVRTlSFS~dg~~-lASa----SEDh--------~IDIA~v---etGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 233 -PVRTLSFSHDGRM-LASA----SEDH--------FIDIAEV---ETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred -ceEEEEeccCcce-eecc----Cccc--------eEEeEec---ccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 3779999999996 5422 1122 1334444 44433222234667788999999999999865543
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3.5e-07 Score=91.62 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=136.2
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
....++.+.|.|--..| .+... ++.-+||.+|-+.....+=.+...- .+....++|+|+..+|.+.
T Consensus 212 s~~~I~sv~FHp~~pll-lvaG~-------d~~lrifqvDGk~N~~lqS~~l~~f----Pi~~a~f~p~G~~~i~~s~-- 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLL-LVAGL-------DGTLRIFQVDGKVNPKLQSIHLEKF----PIQKAEFAPNGHSVIFTSG-- 277 (514)
T ss_pred CcCCceEEEecCCCceE-EEecC-------CCcEEEEEecCccChhheeeeeccC----ccceeeecCCCceEEEecc--
Confidence 33468889999966555 44432 5667788777555542222122211 1556789999995455431
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-----ceEeeeee
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEP 182 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-----~~~~~~~~ 182 (706)
...-+|.+|+ +.+..++... .....+.+
T Consensus 278 ----------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 278 ----------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred ----------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 1146888898 5566666443 25678999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||++.|++....+ .|.+....+++. ++..... ..+..+.|+.||+. |+.+ .
T Consensus 312 Shd~~fia~~G~~G-------------~I~lLhakT~el--i~s~Kie-----------G~v~~~~fsSdsk~-l~~~-~ 363 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNG-------------HIHLLHAKTKEL--ITSFKIE-----------GVVSDFTFSSDSKE-LLAS-G 363 (514)
T ss_pred cCCCCeEEEcccCc-------------eEEeehhhhhhh--hheeeec-----------cEEeeEEEecCCcE-EEEE-c
Confidence 99999998876553 577766665542 2211110 12458899999976 5433 1
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEeeccc--ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
..+.||+||+ ............+ .-..+.-|++|.+|+..+. .+...||-.+-.-....|++
T Consensus 364 -----------~~GeV~v~nl---~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~--~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 364 -----------GTGEVYVWNL---RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD--SGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred -----------CCceEEEEec---CCcceEEEEeecCccceeeeeecCCCceEEeccC--cceEEEeccchhhccCCCCc
Confidence 1225899998 2222222222233 3456677899998887652 24556666543222244555
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+..- .++ .-....+.|++|+..|+...
T Consensus 428 ik~~--dNL--tt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 428 IKTV--DNL--TTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred hhhh--hhh--heeeeeeeeCcchhhhhhhh
Confidence 5211 111 11233477899999887765
No 131
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.82 E-value=7e-08 Score=100.76 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC-------------------
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK------------------- 572 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~------------------- 572 (706)
++|+||+-||-. +....+...+..||++||+|+++..+...+....
T Consensus 99 ~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~ 163 (379)
T PF03403_consen 99 KFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLE 163 (379)
T ss_dssp -EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT--------
T ss_pred CCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccc
Confidence 499999999842 1222233567889999999999666543321000
Q ss_pred -----CC----ch------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEechHHHHHH
Q 005240 573 -----LP----ND------RFVEQLVSSAEAAVEEVVRR--------------------GVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 573 -----~~----~~------~~~~~~~~D~~~~~~~l~~~--------------------~~id~~~i~i~G~S~GG~~a~ 617 (706)
.. .. ...+.-..|+..+++.|.+. +.+|.++|+++|||+||..++
T Consensus 164 ~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~ 243 (379)
T PF03403_consen 164 EEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATAL 243 (379)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHH
T ss_pred cceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHH
Confidence 00 00 11223367777788777641 236788999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCC--------CCCc------cchHH-HHH--HHHHhCCCcEEEEEeCCCCccCCC----
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKT--------LTPF------GFQAE-RFF--DALKGHGALSRLVLLPFEHHVYAA---- 676 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~--------~~~~------~~~~~-~~~--~~l~~~~~~~~~~~~~~~~H~~~~---- 676 (706)
.++.+. .+|+|+|+..|..-.. ..|. .++.. .+. +.+...+....++.+.|..|....
T Consensus 244 ~~l~~d-~r~~~~I~LD~W~~Pl~~~~~~~i~~P~L~InSe~f~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~l 322 (379)
T PF03403_consen 244 QALRQD-TRFKAGILLDPWMFPLGDEIYSKIPQPLLFINSESFQWWENIFRMKKVISNNKESRMLTIKGTAHLSFSDFPL 322 (379)
T ss_dssp HHHHH--TT--EEEEES---TTS-GGGGGG--S-EEEEEETTT--HHHHHHHHTT--TTS-EEEEEETT--GGGGSGGGG
T ss_pred HHHhhc-cCcceEEEeCCcccCCCcccccCCCCCEEEEECcccCChhhHHHHHHHhccCCCcEEEEECCCcCCCcchhhh
Confidence 999998 8999999998754311 1121 11111 111 123334567789999999994311
Q ss_pred --c------------cc----HHHHHHHHHHHHHHHhcc
Q 005240 677 --R------------EN----VMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 677 --~------------~~----~~~~~~~~~~f~~~~l~~ 697 (706)
+ -+ .....+.+++||++||..
T Consensus 323 l~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~ 361 (379)
T PF03403_consen 323 LSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGL 361 (379)
T ss_dssp TS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 01 124456689999999874
No 132
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.82 E-value=7.3e-08 Score=98.11 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=56.0
Q ss_pred HHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..+++.||.|++++.+ |+|.+.... .......+|+.++++.+ +.+++.++||||||++++.++.++|+
T Consensus 54 ~~l~~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~ 124 (282)
T TIGR03343 54 GPFVDAGYRVILKDSP---GFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYPD 124 (282)
T ss_pred HHHHhCCCEEEEECCC---CCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhChH
Confidence 4566789999996665 455554321 11112345555544443 55799999999999999999999999
Q ss_pred ceeEEEeccCC
Q 005240 626 LFCCGIARSGS 636 (706)
Q Consensus 626 ~~~a~v~~~~~ 636 (706)
+++++|+.+|.
T Consensus 125 ~v~~lvl~~~~ 135 (282)
T TIGR03343 125 RIGKLILMGPG 135 (282)
T ss_pred hhceEEEECCC
Confidence 99999988753
No 133
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.81 E-value=1.6e-07 Score=94.01 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVE 591 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~ 591 (706)
.|.||++||.+.. ...+ ...+..| +.+|.|+..+.+ |+|.+... ........+|+.++++
T Consensus 16 ~~~iv~lhG~~~~-----------~~~~----~~~~~~l-~~~~~vi~~D~~---G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGS-----------LDNL----GVLARDL-VNDHDIIQVDMR---NHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCc-----------hhHH----HHHHHHH-hhCCeEEEECCC---CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3679999996421 0111 1223333 467888885555 45544332 2234566778888777
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
++ ...++.++|||+||.+++.++.++|+++++++..+
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 65 33679999999999999999999999999998864
No 134
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.81 E-value=1.8e-08 Score=112.92 Aligned_cols=134 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|. +.--|+.|.....+. ++||+|++|||.+..|+. .. ..+.....++..+++|+..||| |.-
T Consensus 105 sEDC--L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~---------~~--~~~~~~~~~~~~~vivVt~nYRlg~~ 169 (535)
T PF00135_consen 105 SEDC--LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSG---------SF--PPYDGASLAASKDVIVVTINYRLGAF 169 (535)
T ss_dssp ES-----EEEEEEETSSSSTT--SEEEEEEE--STTTSSCT---------TS--GGGHTHHHHHHHTSEEEEE----HHH
T ss_pred CchH--HHHhhhhcccccccc--ccceEEEeecccccCCCc---------cc--ccccccccccCCCEEEEEeccccccc
Confidence 4566 445599999854432 599999999998754322 00 1122345567799999987876 333
Q ss_pred CCCCCCCchh-hHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCC
Q 005240 568 GEGDKLPNDR-FVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (706)
Q Consensus 568 g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~ 637 (706)
|+-....... .++..+.|+..|++|+++. .| -||+||-|+|+|.||..+..++..- ..+|+.+|+.+|..
T Consensus 170 Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 170 GFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp HH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred ccccccccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 4321111111 2567789999999999985 33 6999999999999999998888663 35899999999943
No 135
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.81 E-value=3.5e-07 Score=101.03 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=69.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.++..+.||||+.+++-.+.+ +.|.+||..+-+..+...+. . .-+..+.|-|=|+
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H--~----------s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGH--Q----------SLVKGVSWDPIGK 184 (942)
T ss_pred CccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeecc--c----------ccccceEECCccC
Confidence 688899999999999866654 47999998755332222221 1 1144779999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec------ccccccceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
. ++-.+ + |. .|.+|... +-+-.+.++.. ...+..+.|||||++|+....-.++...+-+
T Consensus 185 y-~ASqs--d--Dr--------tikvwrt~--dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 185 Y-FASQS--D--DR--------TLKVWRTS--DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred e-eeeec--C--Cc--------eEEEEEcc--cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 7 54331 1 11 24444431 22333444432 2346678999999999865322223333444
Q ss_pred EcC
Q 005240 329 VCP 331 (706)
Q Consensus 329 ~d~ 331 (706)
++.
T Consensus 250 ieR 252 (942)
T KOG0973|consen 250 IER 252 (942)
T ss_pred Eec
Confidence 444
No 136
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.80 E-value=2.6e-08 Score=105.58 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=103.7
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH--HHHHHCCe
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRF 556 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~G~ 556 (706)
.+....+.++-.||+.|..-||+|.+ .+|+|+|+..+=.|+.- ... .+........ ..++++||
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k--------~~~-~~~~~~~~~p~~~~~aa~GY 81 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRK--------RNG-TFGPQLSALPQPAWFAAQGY 81 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccc--------ccc-cCcchhhcccccceeecCce
Confidence 35666778888899999999999986 24689999876333321 000 0000001111 26899999
Q ss_pred EEEEcCCCCcCCCCCCCCch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 557 AVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+|+..+-|| .|.+.... .+.....+|-.+.|+|+.++++-+ .+||++|.||+|+..+++|+..|.-.||++...+
T Consensus 82 avV~qDvRG---~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~ 157 (563)
T COG2936 82 AVVNQDVRG---RGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEG 157 (563)
T ss_pred EEEEecccc---cccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccc
Confidence 999866654 44444432 222357889999999999998876 7999999999999999999999999999999998
Q ss_pred CCCC
Q 005240 636 SYNK 639 (706)
Q Consensus 636 ~~d~ 639 (706)
..|.
T Consensus 158 ~~D~ 161 (563)
T COG2936 158 LVDR 161 (563)
T ss_pred cccc
Confidence 8763
No 137
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=1.5e-06 Score=92.14 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=118.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....+.+||||++||.... ++ .+-++|...|-+.. .+.+.. ++..+.|+.+|+.|+..+-+
T Consensus 352 ~i~~l~YSpDgq~iaTG~e--------Dg--KVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAE--------DG--KVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEeccC--------CC--cEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecC---
Confidence 5778899999999998653 44 44555766766542 233332 37889999999988776421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC--ceEeeeeeCCCC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQ 186 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~--~~~~~~~~SpDG 186 (706)
+.+-.+|+ .. .-+.++.+ .....++..|-|
T Consensus 414 ----------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 414 ----------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ----------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 56666777 33 45555555 456788888889
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
..+...+.+ ..+|++|++++++...+..+. + .| +..++|+|+|.. |+-.
T Consensus 448 elV~AG~~d------------~F~IfvWS~qTGqllDiLsGH--E-gP---------Vs~l~f~~~~~~-LaS~------ 496 (893)
T KOG0291|consen 448 ELVCAGAQD------------SFEIFVWSVQTGQLLDILSGH--E-GP---------VSGLSFSPDGSL-LASG------ 496 (893)
T ss_pred CEEEeeccc------------eEEEEEEEeecCeeeehhcCC--C-Cc---------ceeeEEccccCe-EEec------
Confidence 766543332 368999999988765544432 1 11 346789999986 5522
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
.+..+|.+||+= -..++.+.| .....+..++|+|||+.|+...
T Consensus 497 ------SWDkTVRiW~if-~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 497 ------SWDKTVRIWDIF-SSSGTVETL-EIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ------cccceEEEEEee-ccCceeeeE-eeccceeEEEEcCCCCeEEEEE
Confidence 122357777761 012233333 3455667889999999999875
No 138
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.78 E-value=3.5e-07 Score=95.52 Aligned_cols=286 Identities=14% Similarity=0.100 Sum_probs=139.6
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 83 (706)
..|.+.|+.. ++ .+..++.+....+.++||||++|+-+. ....++-++|.++.+..+.......
T Consensus 58 g~vsviD~~~----~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n---------~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 58 GTVSVIDLAT----GK--VVATIKVGGNPRGIAVSPDGKYVYVAN---------YEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp SEEEEEETTS----SS--EEEEEE-SSEEEEEEE--TTTEEEEEE---------EETTEEEEEETTT--EEEEEE--EE-
T ss_pred CeEEEEECCc----cc--EEEEEecCCCcceEEEcCCCCEEEEEe---------cCCCceeEeccccccceeeccccccc
Confidence 3577888855 43 444455777788999999999996544 2346899999988776543211110
Q ss_pred --cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 --~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.....+..+.-||+...+++... ..+++|+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lk------------------------------------------------d~~~I~v 154 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLK------------------------------------------------DTGEIWV 154 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEET------------------------------------------------TTTEEEE
T ss_pred ccccCCCceeEEecCCCCEEEEEEc------------------------------------------------cCCeEEE
Confidence 00111334455677765555432 2278999
Q ss_pred EccCC-Cc---eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcc
Q 005240 162 GSLDG-TA---KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVC 236 (706)
Q Consensus 162 ~~l~g-~~---~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~ 236 (706)
+|... +. +.+..+.......|+|||++++...... ..+.++|...++...+... ......+..
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccccc------------ceeEEEeeccceEEEEeeccccccccccc
Confidence 99733 22 2232234566789999999997765542 4788899887766554332 111100100
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEE
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~ 315 (706)
..++-.....|.-.+....+ +... +.+ .+.++|. ..-+ .+++... +.-.-+.-+||+++++.
T Consensus 223 --~~php~~g~vw~~~~~~~~~-~~~i-g~~---------~v~v~d~---~~wkvv~~I~~~-G~glFi~thP~s~~vwv 285 (369)
T PF02239_consen 223 --NFPHPGFGPVWATSGLGYFA-IPLI-GTD---------PVSVHDD---YAWKVVKTIPTQ-GGGLFIKTHPDSRYVWV 285 (369)
T ss_dssp --EEEETTTEEEEEEEBSSSSE-EEEE-E-----------TTT-STT---TBTSEEEEEE-S-SSS--EE--TT-SEEEE
T ss_pred --cccCCCcceEEeecccccee-cccc-cCC---------ccccchh---hcCeEEEEEECC-CCcceeecCCCCccEEe
Confidence 00011112345433322011 1111 111 1222333 2222 2334332 22255677999999988
Q ss_pred EeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC--CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCC
Q 005240 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG--SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (706)
..........|.++|.++-+ ....+... ++ ...+.|++||++++++.-.. +
T Consensus 286 d~~~~~~~~~v~viD~~tl~-~~~~i~~~--------~~~~~~h~ef~~dG~~v~vS~~~~------------------~ 338 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLK-VVKTITPG--------PGKRVVHMEFNPDGKEVWVSVWDG------------------N 338 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTE-EEE-HHHH--------HT--EEEEEE-TTSSEEEEEEE--------------------T
T ss_pred eccCCCCCceEEEEECcCcc-eeEEEecc--------CCCcEeccEECCCCCEEEEEEecC------------------C
Confidence 62222235579999988831 11122111 12 23477899999999987321 0
Q ss_pred CCceeeeecCCCceeee
Q 005240 394 IPFLDLFDINTGSKERI 410 (706)
Q Consensus 394 ~~~l~~~d~~~g~~~~l 410 (706)
-.|..+|.+|.+..+.
T Consensus 339 -~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 339 -GAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TEEEEEETTTTEEEEE
T ss_pred -CEEEEEECCCcEEEEE
Confidence 0466788888765443
No 139
>PRK10115 protease 2; Provisional
Probab=98.78 E-value=3.3e-06 Score=95.67 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=121.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
......|||||++|||+.+ ..++...+|+++++++|+ ...+. .. ...+.|++||+.|+|......
T Consensus 128 ~l~~~~~Spdg~~la~~~d-----~~G~E~~~l~v~d~~tg~~l~~~i~---~~-----~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAED-----FLSRRQYGIRFRNLETGNWYPELLD---NV-----EPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEec-----CCCcEEEEEEEEECCCCCCCCcccc---Cc-----ceEEEEeeCCCEEEEEEecCC
Confidence 3556789999999999974 334667889999999887 33332 11 135899999999998864211
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC--ceEe-eeeeC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYT-AVEPS 183 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~--~~~~-~~~~S 183 (706)
.. ...+||+.++ ++ +.+.|... .... ....+
T Consensus 195 ~~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s 231 (686)
T PRK10115 195 TL-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT 231 (686)
T ss_pred CC-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Confidence 00 1168999999 66 44555443 2122 33345
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
.|++++++...... .+++++++.+ .++.+.+...... . .+.....+.. +++..
T Consensus 232 ~d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-ly~~t 286 (686)
T PRK10115 232 TSKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRRKD-------------H-EYSLDHYQHR-FYLRS 286 (686)
T ss_pred CCCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECCCC-------------C-EEEEEeCCCE-EEEEE
Confidence 59999876555432 3577887753 2222322222111 0 1122222333 66665
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.+.. +..|+.++++ +.++.+.|... ...+..+.|+. ..|++.... .+..+|+.+++.+
T Consensus 287 n~~~~--------~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~-~g~~~l~~~~~~~ 347 (686)
T PRK10115 287 NRHGK--------NFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQ-RGLTSLRQINRKT 347 (686)
T ss_pred cCCCC--------CceEEEecCC--CcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEe-CCEEEEEEEcCCC
Confidence 44221 2246676762 13455666544 34667777773 466665433 4677899999875
No 140
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.77 E-value=1.7e-08 Score=92.43 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=103.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCC---CCchhhHH-----HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDK---LPNDRFVE-----QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~---~~~~~~~~-----~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
..+..++..||.|+.|+...+..+..+ .....|++ ....|+...++||+.++ ++.+||++|+|+||-.+.
T Consensus 58 ~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv 135 (242)
T KOG3043|consen 58 EGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVV 135 (242)
T ss_pred HHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEE
Confidence 456677789999999888754332222 11223433 45789999999999665 468999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCC------CCCccc---------hH---HHHHHHHHhCC-CcEEEEEeCCCCccCCC--
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKT------LTPFGF---------QA---ERFFDALKGHG-ALSRLVLLPFEHHVYAA-- 676 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~------~~~~~~---------~~---~~~~~~l~~~~-~~~~~~~~~~~~H~~~~-- 676 (706)
.+....| .|.|+++..|..-.. -.|..+ .. .++-++|+... ...++.+|+|.+|+|..
T Consensus 136 ~~~~~~~-~f~a~v~~hps~~d~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r 214 (242)
T KOG3043|consen 136 TLSAKDP-EFDAGVSFHPSFVDSADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARR 214 (242)
T ss_pred Eeeccch-hheeeeEecCCcCChhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhc
Confidence 9999886 899999998865322 123221 11 14555555543 23579999999999973
Q ss_pred -----cc---cHHHHHHHHHHHHHHHhc
Q 005240 677 -----RE---NVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 677 -----~~---~~~~~~~~~~~f~~~~l~ 696 (706)
++ ...+.++.++.||++||.
T Consensus 215 ~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 215 ANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 11 235888999999999873
No 141
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.77 E-value=1.3e-06 Score=87.87 Aligned_cols=298 Identities=14% Similarity=0.179 Sum_probs=161.4
Q ss_pred cccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCC----cc--ccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPD----IC--LNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~----~~--~~~~~~~~~wSpDg~~l~ 102 (706)
.+..-+|+|--. .+|+.+. +....+|.+.-+. +....+.++.. .. -+..+..++|+.||..|+
T Consensus 180 ~V~~~~WnP~~~~llasg~~--------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSG--------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred ceEEEecCchhhhhhhccCC--------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 456678999666 5555432 4446666654322 22111111110 01 122367899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeee
Q 005240 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAV 180 (706)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~ 180 (706)
+.+.. +.+-+++.+| ....|... +.+.++
T Consensus 252 tG~~~-------------------------------------------------G~~riw~~~G~l~~tl~~HkgPI~sl 282 (524)
T KOG0273|consen 252 TGSED-------------------------------------------------GEARIWNKDGNLISTLGQHKGPIFSL 282 (524)
T ss_pred EeecC-------------------------------------------------cEEEEEecCchhhhhhhccCCceEEE
Confidence 87421 5666678878 56666666 889999
Q ss_pred eeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+|+.+|.+|+-...+ ..+.+||.-++..++.....-. | .-++.|..+... +
T Consensus 283 KWnk~G~yilS~~vD-------------~ttilwd~~~g~~~q~f~~~s~---~---------~lDVdW~~~~~F----~ 333 (524)
T KOG0273|consen 283 KWNKKGTYILSGGVD-------------GTTILWDAHTGTVKQQFEFHSA---P---------ALDVDWQSNDEF----A 333 (524)
T ss_pred EEcCCCCEEEeccCC-------------ccEEEEeccCceEEEeeeeccC---C---------ccceEEecCceE----e
Confidence 999999999855443 3788999987776654433211 0 114566655431 1
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
. ... ...|+++-++ ...-...+..+.+.+..+.|.|-|+.|+..++ ++..+||.+...+. ...
T Consensus 334 t--s~t--------d~~i~V~kv~--~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd--D~TlkiWs~~~~~~---~~~ 396 (524)
T KOG0273|consen 334 T--SST--------DGCIHVCKVG--EDRPVKTFIGHHGEVNALKWNPTGSLLASCSD--DGTLKIWSMGQSNS---VHD 396 (524)
T ss_pred e--cCC--------CceEEEEEec--CCCcceeeecccCceEEEEECCCCceEEEecC--CCeeEeeecCCCcc---hhh
Confidence 1 111 1123343331 12334456678889999999999998887653 35678888765442 112
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhh
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (706)
|.. ....++ .+.|||+|...--.- . +. +...+ .-...+..+|+..|...-.+
T Consensus 397 l~~-Hskei~------t~~wsp~g~v~~n~~----~-~~-~l~sa------s~dstV~lwdv~~gv~i~~f--------- 448 (524)
T KOG0273|consen 397 LQA-HSKEIY------TIKWSPTGPVTSNPN----M-NL-MLASA------SFDSTVKLWDVESGVPIHTL--------- 448 (524)
T ss_pred hhh-hcccee------eEeecCCCCccCCCc----C-Cc-eEEEe------ecCCeEEEEEccCCceeEee---------
Confidence 211 111111 255677765321100 0 00 00000 00113444555555432222
Q ss_pred hhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 421 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
..+....-.++|||||++++.- +.-.-|..|+..+++..+
T Consensus 449 --~kH~~pVysvafS~~g~ylAsG----s~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 449 --MKHQEPVYSVAFSPNGRYLASG----SLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred --ccCCCceEEEEecCCCcEEEec----CCCCeeEeccccchheeE
Confidence 1222222357999999988853 333457788766665444
No 142
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.77 E-value=1.9e-07 Score=93.22 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. .. .+.........||.|++.+.+ |+|.+... .....+..+|+.+.
T Consensus 13 ~~~iv~lhG~~~~-----------~~-----~~~~~~~~l~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGS-----------GS-----YWAPQLDVLTQRFHVVTYDHR---GTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcc-----------hh-----HHHHHHHHHHhccEEEEEcCC---CCCCCCCCCcccCCHHHHHHHHHHH
Confidence 4789999996311 11 111122233568999996665 44544321 12344555666665
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++++ +..++.++|+||||++++.++.++|++++++|..++.
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~ 114 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAW 114 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCC
Confidence 5543 3468999999999999999999999999998887753
No 143
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.75 E-value=1.8e-07 Score=92.68 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch----hhHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEAA 589 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~D~~~~ 589 (706)
|+||++||.+.. ...+ ......|+ .||.|+.++.+ |+|.+.... ......+.|+
T Consensus 2 ~~vv~~hG~~~~-----------~~~~----~~~~~~L~-~~~~v~~~d~~---g~G~s~~~~~~~~~~~~~~~~~~--- 59 (251)
T TIGR03695 2 PVLVFLHGFLGS-----------GADW----QALIELLG-PHFRCLAIDLP---GHGSSQSPDEIERYDFEEAAQDI--- 59 (251)
T ss_pred CEEEEEcCCCCc-----------hhhH----HHHHHHhc-ccCeEEEEcCC---CCCCCCCCCccChhhHHHHHHHH---
Confidence 578999995321 0111 12334455 89999986665 445443211 1122223331
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+..+.+. .+.+++.++|||+||++++.++.++|+.++++++.++.
T Consensus 60 ~~~~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~ 104 (251)
T TIGR03695 60 LATLLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGS 104 (251)
T ss_pred HHHHHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCC
Confidence 3333332 24578999999999999999999999999999888764
No 144
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.6e-06 Score=93.92 Aligned_cols=197 Identities=12% Similarity=0.123 Sum_probs=124.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc-CCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+...+|||||+.|+-.+ ....|+++|+ +.+...+...+... .+..+.|+|+|+.|+..+.+
T Consensus 205 ~v~~~~fs~d~~~l~s~s----------~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p~g~~i~Sgs~D--- 267 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGS----------DDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSPDGNLLVSGSDD--- 267 (456)
T ss_pred ceeeeEECCCCcEEEEec----------CCceEEEeeccCCCeEEEEecCCCC----ceEEEEecCCCCEEEEecCC---
Confidence 688999999999877654 3367888887 44455444332222 26789999999776665421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~ 187 (706)
..+.++++ +|++.+ |... ..+..+++++||+
T Consensus 268 ----------------------------------------------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 268 ----------------------------------------------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred ----------------------------------------------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 46777788 455554 4444 7889999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
.|+..+.+ ..|.+||+.++..+ .......... | ...+.|+|+++. |+.. .
T Consensus 302 ~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~-~---------~~~~~fsp~~~~-ll~~-~--- 353 (456)
T KOG0266|consen 302 LLVSASYD-------------GTIRVWDLETGSKLCLKLLSGAENSA-P---------VTSVQFSPNGKY-LLSA-S--- 353 (456)
T ss_pred EEEEcCCC-------------ccEEEEECCCCceeeeecccCCCCCC-c---------eeEEEECCCCcE-EEEe-c---
Confidence 99866432 48999999987743 2222111111 2 346799999986 4322 1
Q ss_pred CCCccccCccceeeeecCCCCCCC-CceEEeecc---cccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLD---LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~---~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
....+.+||+ ..+ .+....... .....+..+++|+.++..+. ...|+.+|+.+.
T Consensus 354 --------~d~~~~~w~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 354 --------LDRTLKLWDL---RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSG 411 (456)
T ss_pred --------CCCeEEEEEc---cCCcceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCcc
Confidence 1124667777 333 233333222 23445566888998887652 235788888773
No 145
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.72 E-value=2.8e-07 Score=98.39 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=135.4
Q ss_pred CCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe
Q 005240 16 DSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 16 ~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS 95 (706)
..++..+.+.++.. .+...+||||-+.|.-.+. +....||.++.. ....+..+.. ..+-.++|+
T Consensus 439 ~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t~--s~~V~y~GH~----~PVwdV~F~ 502 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDTW--SCLVIYKGHL----APVWDVQFA 502 (707)
T ss_pred cCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeecccc--eeEEEecCCC----cceeeEEec
Confidence 34455555554333 4888999999999977653 566778877643 3333332221 125677899
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP- 174 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~- 174 (706)
|-|-+++..+.+ ...+||..|- ..+.++..+
T Consensus 503 P~GyYFatas~D-----------------------------------------------~tArLWs~d~-~~PlRifagh 534 (707)
T KOG0263|consen 503 PRGYYFATASHD-----------------------------------------------QTARLWSTDH-NKPLRIFAGH 534 (707)
T ss_pred CCceEEEecCCC-----------------------------------------------ceeeeeeccc-CCchhhhccc
Confidence 999665543211 2256776654 245555555
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.++.++.|.|++.+++-.+.+ ..+.+||+.++..+++..+.- .| +..++|||+|
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~GH~---~~---------V~al~~Sp~G 589 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTGHK---GP---------VTALAFSPCG 589 (707)
T ss_pred ccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecCCC---Cc---------eEEEEEcCCC
Confidence 788899999999999754332 479999999766666654421 12 4478999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
+. |+- ++.. ..|.+||+ .++.+ .++..+.+.+.++.||.||..|+.... +...+|| |+.
T Consensus 590 r~-LaS-----g~ed-------~~I~iWDl---~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW--D~~ 649 (707)
T KOG0263|consen 590 RY-LAS-----GDED-------GLIKIWDL---ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW--DLT 649 (707)
T ss_pred ce-Eee-----cccC-------CcEEEEEc---CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE--Ech
Confidence 97 552 1222 24889999 56554 455667888999999999998887542 2344555 544
Q ss_pred C
Q 005240 333 S 333 (706)
Q Consensus 333 ~ 333 (706)
.
T Consensus 650 ~ 650 (707)
T KOG0263|consen 650 K 650 (707)
T ss_pred h
Confidence 3
No 146
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.1e-05 Score=73.91 Aligned_cols=198 Identities=16% Similarity=0.223 Sum_probs=114.3
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCc---eeecccCCCccccccccceEEecCCcEEEEEecC
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
++..++|+|- |..||. . .....|.+++..++. .+.++... -...+++++|||.|++|+..+-+
T Consensus 16 r~W~~awhp~~g~ilAs-c---------g~Dk~vriw~~~~~~s~~ck~vld~~---hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILAS-C---------GTDKAVRIWSTSSGDSWTCKTVLDDG---HKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCceEEEe-e---------cCCceEEEEecCCCCcEEEEEecccc---chheeeeeeecCCCcEEEEeecc
Confidence 5899999997 665544 3 223556666665332 23232211 12348899999999999887532
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC--ceEeeeeeC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~--~~~~~~~~S 183 (706)
.. .-||.- -++ +.....++ ..+..++||
T Consensus 83 ~t-----------------------------------------------~~Iw~k-~~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 AT-----------------------------------------------VVIWKK-EDGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred ce-----------------------------------------------EEEeec-CCCceeEEeeeeccccceeEEEEc
Confidence 11 122211 133 22222233 678899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeE---EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~---~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
++|.+||.-+.. ..+++|.++.. +.. .|..+. .-+....|.|... |.+
T Consensus 115 ~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~~Ht-------------qDVK~V~WHPt~d--lL~ 166 (312)
T KOG0645|consen 115 ASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQEHT-------------QDVKHVIWHPTED--LLF 166 (312)
T ss_pred CCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeecccc-------------ccccEEEEcCCcc--eeE
Confidence 999999976654 37899988833 222 122211 1144678998665 443
Q ss_pred EEeccCCCCccccCccceeeeecCCCCCCCC---ceEEeecccccccceecCCCceEEEEeeccccceEEEE--EcCCC
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL--VCPGS 333 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~--~d~~~ 333 (706)
...-++ .|.++.-+ +++. ...|.....-+..+.|.+.|.+++..++ ++..+||+ .++..
T Consensus 167 S~SYDn-----------TIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd--D~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 167 SCSYDN-----------TIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD--DGTVSIWRLYTDLSG 230 (312)
T ss_pred EeccCC-----------eEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecC--CcceEeeeeccCcch
Confidence 322111 23333331 1221 3345445557888899999999987653 36778888 55554
No 147
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.71 E-value=2.6e-07 Score=91.71 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.||.|+..+.+ |+|.+... ....+...+|+...++.+ +.+++.++|||+||++++.++.++|+++++
T Consensus 36 l~~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~i~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~ 106 (251)
T TIGR02427 36 LTPDFRVLRYDKR---GHGLSDAPEGPYSIEDLADDVLALLDHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRA 106 (251)
T ss_pred hhcccEEEEecCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHH
Confidence 4579999986665 44444222 123445556665555543 346899999999999999999999999998
Q ss_pred EEeccC
Q 005240 630 GIARSG 635 (706)
Q Consensus 630 ~v~~~~ 635 (706)
+++.++
T Consensus 107 li~~~~ 112 (251)
T TIGR02427 107 LVLSNT 112 (251)
T ss_pred HhhccC
Confidence 887764
No 148
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.70 E-value=9.5e-07 Score=90.50 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---------hhHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVS 584 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~ 584 (706)
|.||++||.+..+ ..| ......|+.. |.|++++.+ |+|.+.... ...++..+
T Consensus 30 ~~vlllHG~~~~~-----------~~w----~~~~~~L~~~-~~vi~~Dlp---G~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHW----RKNTPVLAKS-HRVYAIDLL---GYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHH----HHHHHHHHhC-CeEEEEcCC---CCCCCCCCccccccccccCCHHHHHH
Confidence 5689999964210 111 1234556655 577775554 555553321 22445566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+.+.++.+ + .+++.++||||||++++.++.++|++++++|+.++.
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence 666666544 2 368999999999999999999999999999998764
No 149
>PRK10985 putative hydrolase; Provisional
Probab=98.69 E-value=1.9e-07 Score=96.78 Aligned_cols=132 Identities=17% Similarity=0.012 Sum_probs=81.3
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
++..||..+...+...+. .+ .+.|+||++||-+- +. ...+....+..|+++||.|+..+.+|.
T Consensus 36 ~~~~dg~~~~l~w~~~~~-~~---~~~p~vll~HG~~g-----------~~--~~~~~~~~~~~l~~~G~~v~~~d~rG~ 98 (324)
T PRK10985 36 LELPDGDFVDLAWSEDPA-QA---RHKPRLVLFHGLEG-----------SF--NSPYAHGLLEAAQKRGWLGVVMHFRGC 98 (324)
T ss_pred EECCCCCEEEEecCCCCc-cC---CCCCEEEEeCCCCC-----------CC--cCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 455678665443322211 11 12589999998531 10 111112355678899999999777754
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc--eeEEEeccCCCC
Q 005240 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~--~~a~v~~~~~~d 638 (706)
.+..... ...+......|+..+++++.++. ...++.++||||||.+++.++.++++. ++++++.++.++
T Consensus 99 g~~~~~~-~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 99 SGEPNRL-HRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred CCCccCC-cceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 3221111 11111234688999999998763 236799999999999888888776543 788888877654
No 150
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.69 E-value=6e-07 Score=91.05 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~ 590 (706)
|+||++||.+.. ...+ ......| +.+|.|+..+.+ |+|.+... ....+...+|+.+++
T Consensus 29 ~~vv~~hG~~~~-----------~~~~----~~~~~~l-~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~i 89 (278)
T TIGR03056 29 PLLLLLHGTGAS-----------THSW----RDLMPPL-ARSFRVVAPDLP---GHGFTRAPFRFRFTLPSMAEDLSALC 89 (278)
T ss_pred CeEEEEcCCCCC-----------HHHH----HHHHHHH-hhCcEEEeecCC---CCCCCCCccccCCCHHHHHHHHHHHH
Confidence 689999995311 0111 1223333 457999986665 55655332 223455566666554
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+ +.+++.++||||||.+++.++.+.|++++++++.++.
T Consensus 90 ~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~ 129 (278)
T TIGR03056 90 AAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAA 129 (278)
T ss_pred HHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCc
Confidence 432 2357899999999999999999999988888877653
No 151
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.67 E-value=6.3e-06 Score=83.99 Aligned_cols=283 Identities=11% Similarity=0.071 Sum_probs=147.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....|||-|++|++.- ....++|-.+.. +...++ ... .+..+.+||.|++|...+.+...+
T Consensus 34 p~~~~~~SP~G~~l~~~~---------~~~V~~~~g~~~-~~l~~~---~~~----~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 34 PVAYVSESPLGTYLFSEH---------AAGVECWGGPSK-AKLVRF---RHP----DVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred chhheeecCcchheehhh---------ccceEEccccch-hheeee---ecC----CceecccCcccceeeeeccCCccC
Confidence 577889999999998743 222344432221 133333 221 277889999999988776443311
Q ss_pred CCCCCCCCCCCc---eeecC-CCcccccc-----c--chhccCCchhhhhhhhcccceEEEEccCCCceecCCC----ce
Q 005240 112 PPKKTMVPLGPK---IQSNE-QKNIIISR-----M--TDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AV 176 (706)
Q Consensus 112 ~~~~~~~~~~~~---~~~~~-~~~~~~~~-----~--~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~----~~ 176 (706)
+.....+.+.+ -.|.. .+..+... . ....+.++.+.++.++.-...|+++++++...+.... ..
T Consensus 97 -pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~g 175 (561)
T COG5354 97 -PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVG 175 (561)
T ss_pred -hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccc
Confidence 11111111110 00111 01111111 1 1123445555555555566788888875433322221 46
Q ss_pred EeeeeeCCCC--cEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 177 YTAVEPSPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 177 ~~~~~~SpDG--~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
+..+.|||-| ..|+|........ +..+.+|.+. ++.++..+-... ..-.+.|.+.|
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~k--------pa~~~i~sIp~~s~l~tk~lfk~-------------~~~qLkW~~~g 234 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNK--------PAMVRILSIPKNSVLVTKNLFKV-------------SGVQLKWQVLG 234 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCC--------CcEEEEEEccCCCeeeeeeeEee-------------cccEEEEecCC
Confidence 7889999964 4566655433221 4577777776 232222211111 12267999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+. |.+...... ......-....||++++ .....+......+.+-++.|.|++++++..+... ...+-..|+.+
T Consensus 235 ~~-ll~l~~t~~-ksnKsyfgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~--pa~~s~~~lr~ 307 (561)
T COG5354 235 KY-LLVLVMTHT-KSNKSYFGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM--PASVSVFDLRG 307 (561)
T ss_pred ce-EEEEEEEee-ecccceeccceEEEEee---cccccceeccccccceeeeecccCCceeEEeccc--ccceeeccccc
Confidence 98 544444332 11111112245888887 3333333224467788999999999988765332 23455566665
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ .+-..-..-.+ .+.|||.++++++..
T Consensus 308 N---l~~~~Pe~~rN--------T~~fsp~~r~il~ag 334 (561)
T COG5354 308 N---LRFYFPEQKRN--------TIFFSPHERYILFAG 334 (561)
T ss_pred c---eEEecCCcccc--------cccccCcccEEEEec
Confidence 2 22221111111 144789999988864
No 152
>PTZ00421 coronin; Provisional
Probab=98.65 E-value=1.6e-05 Score=86.16 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=83.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|+|++..++++.... ..|.+||+..++.. .+.... ..+..+.|+|||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~D------------gtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spdG 180 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGAD------------MVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLDG 180 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCC------------CEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECCC
Confidence 5678999999976554444332 47999999865433 332221 224578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccc-ccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+. |+.. .. ...|.+||+ ..++. ..+..+.. ......|.+++..|+...........|.++|+
T Consensus 181 ~l-Latg-s~-----------Dg~IrIwD~---rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 181 SL-LCTT-SK-----------DKKLNIIDP---RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CE-EEEe-cC-----------CCEEEEEEC---CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 85 4422 11 124788888 44443 33433322 33467899998777654322222345666676
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.... .+....+.+. ......+.+++|+..|+...
T Consensus 245 r~~~-~p~~~~~~d~-----~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 245 RKMA-SPYSTVDLDQ-----SSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCCC-CceeEeccCC-----CCceEEEEEcCCCCEEEEEE
Confidence 6532 2332222111 11222355788998776653
No 153
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.64 E-value=1.3e-06 Score=93.29 Aligned_cols=144 Identities=9% Similarity=0.021 Sum_probs=91.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..+.|+|-|-+.+-.+.+ ....+|..+....-++..+..++ +.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D-------------~tArLWs~d~~~PlRifaghlsD------------V~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHD-------------QTARLWSTDHNKPLRIFAGHLSD------------VDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCC-------------ceeeeeecccCCchhhhcccccc------------cceEEECCccc
Confidence 466778899998655433222 35578888866666666665543 33578999987
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. ++ ..+.+. .+.+||+ .+|..++++ .+.+.+..+.+||+|++|+..+. ...|-++|+.+
T Consensus 549 Y-~a----TGSsD~--------tVRlWDv---~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~ 608 (707)
T KOG0263|consen 549 Y-VA----TGSSDR--------TVRLWDV---STGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLAN 608 (707)
T ss_pred c-cc----cCCCCc--------eEEEEEc---CCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCC
Confidence 5 32 112222 4778888 566666654 66889999999999999997642 23466677777
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ .......+.-.. ...++||.||..|+...
T Consensus 609 ~--~~v~~l~~Ht~t------i~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 609 G--SLVKQLKGHTGT------IYSLSFSRDGNVLASGG 638 (707)
T ss_pred C--cchhhhhcccCc------eeEEEEecCCCEEEecC
Confidence 4 222222222222 23488999999887754
No 154
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.64 E-value=4.6e-06 Score=79.10 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=142.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
+.-.|++|...++.|.++..+.++... ..+.-+|-+|+..|.- .|....-++|+++|+..+...+...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~-----------SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG-----------SGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec-----------CCCceEEEEEcccceEEEEecCCcc
Confidence 445788888755566655555555443 5677788887766633 4445666779999987776544332
Q ss_pred cccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 84 CLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 84 ~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+-.+..+| |++.++..+-+ ...+++
T Consensus 188 ----DV~slsl~p~~~ntFvSg~cD-------------------------------------------------~~aklW 214 (343)
T KOG0286|consen 188 ----DVMSLSLSPSDGNTFVSGGCD-------------------------------------------------KSAKLW 214 (343)
T ss_pred ----cEEEEecCCCCCCeEEecccc-------------------------------------------------cceeee
Confidence 266888899 88876543211 345566
Q ss_pred cc-CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 163 SL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 163 ~l-~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
|+ +|..++-..+ .++..+.|-|+|..++-.+.+ ....+||+.......+...+.
T Consensus 215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~---------- 271 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDS---------- 271 (343)
T ss_pred eccCcceeEeecccccccceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCc----------
Confidence 88 6666666555 688999999999888755543 256677776543333333221
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeec
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
...|+..++||..|+ |.|.-..+ ....+||. +.+...-.|..+..++.-+..+|||..+...+++
T Consensus 272 ~~~gitSv~FS~SGR--lLfagy~d-----------~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 272 IICGITSVAFSKSGR--LLFAGYDD-----------FTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccCCceeEEEccccc--EEEeeecC-----------CceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 113455889999998 45442211 13667776 2444455677888899999999999999987765
Q ss_pred cccceEEE
Q 005240 320 KTSQTRTW 327 (706)
Q Consensus 320 ~~~~~~l~ 327 (706)
. ..+||
T Consensus 337 s--~lriW 342 (343)
T KOG0286|consen 337 S--TLRIW 342 (343)
T ss_pred H--heeec
Confidence 3 45565
No 155
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.61 E-value=1.7e-06 Score=82.84 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=68.2
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CCc----cc---------
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TPF----GF--------- 646 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~~----~~--------- 646 (706)
|+.+...+|+++.+|+|||+||..++.++..+|+.|.+..+.+|.+-|.- .+. .|
T Consensus 127 ~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~~~l~~~~~~~~~~~~~i~l~iG~~e~~~~ 206 (264)
T COG2819 127 FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIESLKLLKTKRICLYIGSGELDSS 206 (264)
T ss_pred HHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCHHHhccccccccCCCcceEEEecccccCcc
Confidence 33344568999999999999999999999999999999999999754331 110 00
Q ss_pred ----------hHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 647 ----------QAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 647 ----------~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
+..+....+++ .+....+..+|+++|+-. ....+..++.|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 207 RSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 01155555666 778888889999999643 2334455555554
No 156
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.61 E-value=3.7e-07 Score=85.71 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=82.9
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
-+.+..|+.|.. +|.||+|+++||=. . .+.++....+.++++||+|+++.-....+
T Consensus 31 pPkpLlI~tP~~-----~G~yPVilF~HG~~---------l------~ns~Ys~lL~HIASHGfIVVAPQl~~~~~---- 86 (307)
T PF07224_consen 31 PPKPLLIVTPSE-----AGTYPVILFLHGFN---------L------YNSFYSQLLAHIASHGFIVVAPQLYTLFP---- 86 (307)
T ss_pred CCCCeEEecCCc-----CCCccEEEEeechh---------h------hhHHHHHHHHHHhhcCeEEEechhhcccC----
Confidence 356788898876 45699999999831 1 11122344566778999999966543222
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHc--CC------CCCCcEEEEEechHHHHHHHHHHhCC-C-ceeEEEeccCCC
Q 005240 573 LPNDRFVEQLVSSAEAAVEEVVRR--GV------ADPSRIAVGGHSYGAFMTAHLLAHAP-H-LFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~~~~~~~~~~D~~~~~~~l~~~--~~------id~~~i~i~G~S~GG~~a~~~~~~~p-~-~~~a~v~~~~~~ 637 (706)
....+.+++..++++||.+. .. .+-++++++|||.||..|..++..+. + .|.|+|...|+.
T Consensus 87 ----p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~ 157 (307)
T PF07224_consen 87 ----PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVA 157 (307)
T ss_pred ----CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccC
Confidence 12245577888899999763 11 46679999999999999999998772 2 588888888774
No 157
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.61 E-value=3.9e-06 Score=82.56 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch----hhHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEA 588 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~D~~~ 588 (706)
-|+|+++||=|. .|.++. .....|+++||.|++++- +|||.+.... ........|+.+
T Consensus 44 gP~illlHGfPe-----------~wyswr----~q~~~la~~~~rviA~Dl---rGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPE-----------SWYSWR----HQIPGLASRGYRVIAPDL---RGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCc-----------cchhhh----hhhhhhhhcceEEEecCC---CCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 489999999653 344332 234568889999999544 4788776543 235567888888
Q ss_pred HHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 589 ~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.++.|- -+|+.+.||++|+.+|..++..+|+++.+.|.....
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~ 147 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVP 147 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCC
Confidence 888774 379999999999999999999999999999988754
No 158
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.60 E-value=3.9e-05 Score=75.16 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=136.1
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+....||.||.+||.. +-...|.+....+|..+.....+.. .+..+.|.|-+..|++.+.
T Consensus 107 DSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~illAG~~---- 168 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAHILLAGST---- 168 (399)
T ss_pred CceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEecccccEEEeecC----
Confidence 369999999999999874 2224455555555544433221111 1667889998888877642
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.+|++.+ ++ ..+.+... .....-.|.||||
T Consensus 169 ---------------------------------------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 169 ---------------------------------------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred ---------------------------------------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 167999988 43 34444333 4556778999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCcc----CCCC--cceeeecCCCceEEEE
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSV----REGM--RSISWRADKPSTLYWV 260 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~----~~g~--~~~~~spdg~~~l~~~ 260 (706)
+|+-.... ..|.+|++.++. .-+++...+.+..+...+.. ..+. ..+.....+...+..+
T Consensus 204 r~~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 204 RILTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred eEEEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 99866654 378999998653 33343222111111111000 0000 0122222222212222
Q ss_pred EeccC---------CCCcc-------------ccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee
Q 005240 261 EAQDR---------GDANV-------------EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 261 ~~~~~---------~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
.+... ...-. .-...++|.++|. +...+|.+-.+...+....|.+ ..+|+...
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c- 345 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTAC- 345 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeec-
Confidence 21000 00000 0012346888887 6667777766777788899988 55555433
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+..|+.+|..+++ .+...-+... +...++.+|+++.++...
T Consensus 346 ---~~g~v~~wDaRtG~--l~~~y~GH~~------~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 346 ---ANGKVRQWDARTGQ--LKFTYTGHQM------GILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---cCceEEeeeccccc--eEEEEecCch------heeEEEEcCCCcEEEEec
Confidence 34468889988853 2222222211 233467789988876654
No 159
>PLN02511 hydrolase
Probab=98.58 E-value=7.4e-07 Score=94.50 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=86.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+...+...||..+...++.+..-... ...|+||++||..- + +...+....+..+.+.||.|+.
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~--~~~p~vvllHG~~g-----------~--s~~~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALP--ADAPVLILLPGLTG-----------G--SDDSYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCC--CCCCEEEEECCCCC-----------C--CCCHHHHHHHHHHHHCCCEEEE
Confidence 3344456667887777555543211111 12488999999521 1 0110111234456689999999
Q ss_pred cCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc--eeEEEeccCC
Q 005240 561 GPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~--~~a~v~~~~~ 636 (706)
.+.+| +|.+.. ...+.....+|+..+++++..+. ...++.++|+|+||.+++.++.++|+. +.+++++++.
T Consensus 135 ~d~rG---~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p 209 (388)
T PLN02511 135 FNSRG---CADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNP 209 (388)
T ss_pred EecCC---CCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCC
Confidence 77764 444321 11223345789999999998753 235899999999999999999999886 7777766654
Q ss_pred CC
Q 005240 637 YN 638 (706)
Q Consensus 637 ~d 638 (706)
++
T Consensus 210 ~~ 211 (388)
T PLN02511 210 FD 211 (388)
T ss_pred cC
Confidence 43
No 160
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00019 Score=69.24 Aligned_cols=265 Identities=12% Similarity=0.102 Sum_probs=141.9
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|.++|. +| +.+.+... -.+..+.|......+++.++... ..|...++...+--+...+..
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----------~tIryLsl~dNkylRYF~GH~---- 100 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----------DTIRYLSLHDNKYLRYFPGHK---- 100 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----------CceEEEEeecCceEEEcCCCC----
Confidence 35666677 66 55555544 44556677777777777776432 467777777655444333321
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
.-+-.+.-||-+.. |++. .....|.+||+ ...+-+-+.... ...-+++.|.|..+
T Consensus 101 --------~~V~sL~~sP~~d~---FlS~----------S~D~tvrLWDl---R~~~cqg~l~~~-~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 101 --------KRVNSLSVSPKDDT---FLSS----------SLDKTVRLWDL---RVKKCQGLLNLS-GRPIAAFDPEGLIF 155 (311)
T ss_pred --------ceEEEEEecCCCCe---EEec----------ccCCeEEeeEe---cCCCCceEEecC-CCcceeECCCCcEE
Confidence 11235666776653 3321 11125788888 333333333222 22345789999877
Q ss_pred EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (706)
+.... ...|.++|+..-++.|...+.-.... ...-..+.+||||++|+.+...
T Consensus 156 A~~~~----~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~-------------------- 208 (311)
T KOG1446|consen 156 ALANG----SELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNA-------------------- 208 (311)
T ss_pred EEecC----CCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCC--------------------
Confidence 76541 22577777766433444432211100 0111236689999999887521
Q ss_pred CCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCC
Q 005240 394 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP 473 (706)
Q Consensus 394 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~ 473 (706)
..++++|+=+|....-+..... +.-. .....|+|||+.++-...+. .|..|++++|+..-...-+..
T Consensus 209 -s~~~~lDAf~G~~~~tfs~~~~---~~~~-----~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 209 -SFIYLLDAFDGTVKSTFSGYPN---AGNL-----PLSATFTPDSKFVLSGSDDG----TIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred -CcEEEEEccCCcEeeeEeeccC---CCCc-----ceeEEECCCCcEEEEecCCC----cEEEEEcCCCcEeeEecCCCC
Confidence 1356677767754332222110 0000 12578999998666544444 499999998865554443212
Q ss_pred CCCC-CCCceEEEEEEccCCeEEEEEEEecCC
Q 005240 474 YPTL-ASLQKEMIKYQRKDGVPLTATLYLPPG 504 (706)
Q Consensus 474 ~~~~-~~~~~~~~~~~~~dg~~i~~~l~~P~~ 504 (706)
.+.. ....+...++.+.+. .+- ++.|..
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s-~l~--fw~p~~ 304 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASS-NLV--FWLPDE 304 (311)
T ss_pred CCccccccCCceeeeeecCc-eEE--EEeccc
Confidence 2221 235667777776553 333 455653
No 161
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9.3e-06 Score=85.23 Aligned_cols=222 Identities=12% Similarity=0.170 Sum_probs=136.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..-+.|| -...||.+. ...+|+++..+++..+|..... ..+.++.|+++|..|+....
T Consensus 180 ~nlldWs-s~n~laVal-----------g~~vylW~~~s~~v~~l~~~~~----~~vtSv~ws~~G~~LavG~~------ 237 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-----------GQSVYLWSASSGSVTELCSFGE----ELVTSVKWSPDGSHLAVGTS------ 237 (484)
T ss_pred hhHhhcc-cCCeEEEEe-----------cceEEEEecCCCceEEeEecCC----CceEEEEECCCCCEEEEeec------
Confidence 3446799 455666643 3689999999999988876532 23789999999999998642
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-C-CceecCC-C-ceEeeeeeCCCCcE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G-TAKDFGT-P-AVYTAVEPSPDQKY 188 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g-~~~~lt~-~-~~~~~~~~SpDG~~ 188 (706)
.+.+.++|.. . .++.+.. . ..+..++|. + .
T Consensus 238 -------------------------------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~-~ 271 (484)
T KOG0305|consen 238 -------------------------------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S-S 271 (484)
T ss_pred -------------------------------------------CCeEEEEehhhccccccccCCcCceeEEEecc--C-c
Confidence 1567777873 3 5666666 3 788899998 2 2
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
++ ++..+. ..|..+|+...+ ......+.. ..+-.+.|++|++. ++ .++.
T Consensus 272 ~l-ssGsr~-----------~~I~~~dvR~~~~~~~~~~~H~------------qeVCgLkws~d~~~-lA-----SGgn 321 (484)
T KOG0305|consen 272 VL-SSGSRD-----------GKILNHDVRISQHVVSTLQGHR------------QEVCGLKWSPDGNQ-LA-----SGGN 321 (484)
T ss_pred eE-EEecCC-----------CcEEEEEEecchhhhhhhhccc------------ceeeeeEECCCCCe-ec-----cCCC
Confidence 32 222221 245556654221 111011110 11447899999987 43 3333
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
. +.+++||.. ....+..++.+...+-.++|+|=..-|+... .......|...|..++ +.....+..
T Consensus 322 D-------N~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~~g--~~i~~vdtg-- 387 (484)
T KOG0305|consen 322 D-------NVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTNTG--ARIDSVDTG-- 387 (484)
T ss_pred c-------cceEeccCC--CccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcCCC--cEecccccC--
Confidence 2 248888872 3344556778889999999999765555443 2334456777777764 222222211
Q ss_pred ccccCCCCCceEeccCCCEEEEee
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+-.+.||+..+-|+.+.
T Consensus 388 -----sQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 388 -----SQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred -----CceeeEEEcCCCCEEEEec
Confidence 1122478999998887764
No 162
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.58 E-value=6.1e-05 Score=88.21 Aligned_cols=163 Identities=10% Similarity=0.113 Sum_probs=87.9
Q ss_pred ceEEEEcc-CCC-ceecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCC
Q 005240 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~-~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~ 231 (706)
+.|.++|+ +++ ...+... ..+..++|+| |+..|+-.+.+ ..|.+||+..+.. ..+.. .
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~-~--- 617 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT-K--- 617 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec-C---
Confidence 56777888 443 3444444 6788999997 77777655433 3799999985432 22221 1
Q ss_pred CCCcccCccCCCCcceeeec-CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC--ceEEeecccccccceecC
Q 005240 232 DIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK--PEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~wsp 308 (706)
..+..+.|++ +|.. |+... . .+.|++||+ .... ...+..+...+..+.|+
T Consensus 618 ----------~~v~~v~~~~~~g~~-latgs-~-----------dg~I~iwD~---~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 618 ----------ANICCVQFPSESGRS-LAFGS-A-----------DHKVYYYDL---RNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ----------CCeEEEEEeCCCCCE-EEEEe-C-----------CCeEEEEEC---CCCCccceEecCCCCCEEEEEEe-
Confidence 1123567754 5654 44321 1 125888888 3332 23344556677888897
Q ss_pred CCceEEEEeeccccceEEEEEcCCCC--CCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 309 DSLALVNETWYKTSQTRTWLVCPGSK--DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++..|+..+. ++..+||-+..... ...+...+... ......+.++++|.+|+...
T Consensus 671 ~~~~lvs~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh------~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 DSSTLVSSST--DNTLKLWDLSMSISGINETPLHSFMGH------TNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCEEEEEEC--CCEEEEEeCCCCccccCCcceEEEcCC------CCCeeEEEEcCCCCEEEEEe
Confidence 6677766542 23445554432110 01111111111 01122366899998877665
No 163
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.57 E-value=1.6e-05 Score=80.99 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=128.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-----eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.++..++-|.|.+++.. .....+..+|..+... ++|--... ..+.+++||+.|..|++.+-
T Consensus 169 ~Vsal~~Dp~GaR~~sG----------s~Dy~v~~wDf~gMdas~~~fr~l~P~E~----h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSG----------SLDYTVKFWDFQGMDASMRSFRQLQPCET----HQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EEEEeeecCCCceeeec----------cccceEEEEecccccccchhhhccCcccc----cccceeeecCCCCeEEEEec
Confidence 47788899999999664 3345677778776433 33321222 23778999999998887642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CCCceecCCCceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGTPAVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g~~~~lt~~~~~~~~~~S 183 (706)
...... .. -||..+..-..++-|+.|+ .|.. ..+.+-+|.
T Consensus 235 ~aqakl---------------------~D----------RdG~~~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~wh 277 (641)
T KOG0772|consen 235 SAQAKL---------------------LD----------RDGFEIVEFSKGDQYIRDMYNTKGHI------AELTCGCWH 277 (641)
T ss_pred CcceeE---------------------Ec----------cCCceeeeeeccchhhhhhhccCCce------eeeeccccc
Confidence 111100 00 0000000001133444444 1222 244577899
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCC--CCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAE--DIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~--~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|+.+..+.+.... ..+.+|+++ .++.+++....... ..| +...+|++||+. |+-.
T Consensus 278 P~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~---------~tsC~~nrdg~~-iAag 335 (641)
T KOG0772|consen 278 PDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKTKPAGGKRVP---------VTSCAWNRDGKL-IAAG 335 (641)
T ss_pred cCcccceEEecCC------------CcEEEEecCCchhheeEEeeccCCCcccC---------ceeeecCCCcch-hhhc
Confidence 9999998877653 478999998 33334443332221 112 336799999996 4321
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCceEEe--ec--ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 336 (706)
. .++ -|-+|+.. -.+-.+.-.. .+ ...+..+.||+||++|+.-+. +.. |-++|+...+
T Consensus 336 c-~DG-----------SIQ~W~~~-~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~--D~t--LKvWDLrq~k- 397 (641)
T KOG0772|consen 336 C-LDG-----------SIQIWDKG-SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF--DDT--LKVWDLRQFK- 397 (641)
T ss_pred c-cCC-----------ceeeeecC-CcccccceEeeeccCCCCceeEEEeccccchhhhccC--CCc--eeeeeccccc-
Confidence 1 122 24455430 0011111111 12 336889999999999986432 233 4455555532
Q ss_pred CceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++..... .....+ ....-.||||.+.|+...
T Consensus 398 kpL~~~t-gL~t~~---~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 398 KPLNVRT-GLPTPF---PGTDCCFSPDDKLILTGT 428 (641)
T ss_pred cchhhhc-CCCccC---CCCccccCCCceEEEecc
Confidence 2222211 111110 112345799999877654
No 164
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.56 E-value=2.2e-06 Score=94.51 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=90.5
Q ss_pred ceEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcc
Q 005240 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~ 236 (706)
.+||+.+..|..++++.+.....+.|||||++|+|........+. .......++++.++++++.++ ...
T Consensus 379 s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v-~~~~~~gql~~~~vd~ge~~~--~~~-------- 447 (591)
T PRK13616 379 SSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRV-IRDPATGQLARTPVDASAVAS--RVP-------- 447 (591)
T ss_pred eEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEE-eccCCCceEEEEeccCchhhh--ccC--------
Confidence 689999987777888877558899999999999998754211000 000113577777777766544 111
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEeecc-cccccceecCCC
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLD-LRFRSVSWCDDS 310 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~-~~~~~~~wspDg 310 (706)
.++..+.|||||++ |+|+.. + .|++.-+...++|+. +.|.... ....++.|.+|+
T Consensus 448 -----g~Issl~wSpDG~R-iA~i~~---g----------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 448 -----GPISELQLSRDGVR-AAMIIG---G----------KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred -----CCcCeEEECCCCCE-EEEEEC---C----------EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 22558899999999 888751 1 245521111144542 2244332 335788999999
Q ss_pred ceEEEEeeccccceEEEEEcCCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+ .... +....+|.+++++.
T Consensus 509 ~L~-V~~~--~~~~~v~~v~vDG~ 529 (591)
T PRK13616 509 SLV-VGRS--DPEHPVWYVNLDGS 529 (591)
T ss_pred EEE-EEec--CCCCceEEEecCCc
Confidence 844 4332 24456999999984
No 165
>PTZ00421 coronin; Provisional
Probab=98.56 E-value=1.6e-05 Score=86.27 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=113.9
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCc--------eeecccCCCccccccccceEEecCCc-EE
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--------AKPLFESPDICLNAVFGSFVWVNNST-LL 101 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~wSpDg~-~l 101 (706)
.+..+.||| |++.||..+. + ..|.++++.++. ...+..+.. .+..+.|+|++. .|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~--------D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~~-----~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE--------D--GTIMGWGIPEEGLTQNISDPIVHLQGHTK-----KVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------C--CEEEEEecCCCccccccCcceEEecCCCC-----cEEEEEeCcCCCCEE
Confidence 588999999 8888877643 3 455555654432 112221211 367899999874 55
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEe
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYT 178 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~ 178 (706)
+..+. .+.|.++|+ +++ ...+... ..+.
T Consensus 142 aSgs~-------------------------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAGA-------------------------------------------------DMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEeC-------------------------------------------------CCEEEEEECCCCeEEEEEcCCCCceE
Confidence 54431 156778888 553 3344433 5788
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceE
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l 257 (706)
.++|+|||+.|+..+.+ ..|.+||+..++ +..+..+.... .....|.+++.. |
T Consensus 173 sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~~~~~~-i 226 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWAKRKDL-I 226 (493)
T ss_pred EEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCCCc------------ceEEEEcCCCCe-E
Confidence 99999999988765543 379999998554 33332221110 114578888775 4
Q ss_pred EEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.+. .+... ...|.+||+. ....+..+.. .......+.|++|+..|+.... .++ .|..+|+.+
T Consensus 227 vt~G-~s~s~-------Dr~VklWDlr--~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk-gDg--~Iriwdl~~ 291 (493)
T PTZ00421 227 ITLG-CSKSQ-------QRQIMLWDTR--KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK-GEG--NIRCFELMN 291 (493)
T ss_pred EEEe-cCCCC-------CCeEEEEeCC--CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe-CCC--eEEEEEeeC
Confidence 4222 11111 1247888883 2222322221 2233455779999998776542 123 455566655
No 166
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.54 E-value=6.1e-06 Score=83.63 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=55.0
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+.+|.|++.+.+ |+|.+... ....+...+|+.+.++++ +.+++.++||||||++++.++.++|++++.+
T Consensus 49 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 49 DPDLEVIAFDVP---GVGGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred ccCceEEEECCC---CCCCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 357888885554 56655332 123455566776666665 3467999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
|+.++.
T Consensus 120 vl~~~~ 125 (276)
T TIGR02240 120 ILAATA 125 (276)
T ss_pred EEeccC
Confidence 888754
No 167
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.54 E-value=9.2e-07 Score=84.87 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=103.3
Q ss_pred CCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC-------------CCC-CC-
Q 005240 510 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE-------------GDK-LP- 574 (706)
Q Consensus 510 ~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~-------------g~~-~~- 574 (706)
.++||+||+-||=+ ++...+......||++||+|.++..|+.... ..+ +.
T Consensus 115 ~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45699999999831 1222223456778999999998666554420 000 00
Q ss_pred ------c-------hhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEechHHHHHHHHH
Q 005240 575 ------N-------DRFVEQLVSSAEAAVEEVVRR---------------------GVADPSRIAVGGHSYGAFMTAHLL 620 (706)
Q Consensus 575 ------~-------~~~~~~~~~D~~~~~~~l~~~---------------------~~id~~~i~i~G~S~GG~~a~~~~ 620 (706)
+ ..-...-.+....|++-|.+. +.+|.++++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 0 001112244445555544321 237788999999999999999999
Q ss_pred HhCCCceeEEEeccCCCC----CCC----CCc------cch---HHHHHHHHHhCCCcEEEEEeCCCCccCCC-------
Q 005240 621 AHAPHLFCCGIARSGSYN----KTL----TPF------GFQ---AERFFDALKGHGALSRLVLLPFEHHVYAA------- 676 (706)
Q Consensus 621 ~~~p~~~~a~v~~~~~~d----~~~----~~~------~~~---~~~~~~~l~~~~~~~~~~~~~~~~H~~~~------- 676 (706)
+.+ ..|+|+|+..+-.- ..+ .|. .|| ...+.++....+..-.++.+.|.-|....
T Consensus 260 s~~-t~FrcaI~lD~WM~Pl~~~~~~~arqP~~finv~~fQ~~en~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p 338 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAWMFPLDQLQYSQARQPTLFINVEDFQWNENLLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTP 338 (399)
T ss_pred ccc-cceeeeeeeeeeecccchhhhhhccCCeEEEEcccccchhHHHHHHhhhCCCccceEEEEccceecccccCccccH
Confidence 888 78999998875321 111 121 122 22445555555666678889999994311
Q ss_pred -----------ccc----HHHHHHHHHHHHHHHhc
Q 005240 677 -----------REN----VMHVIWETDRWLQKYCL 696 (706)
Q Consensus 677 -----------~~~----~~~~~~~~~~f~~~~l~ 696 (706)
..+ ..-..+..++||++|+.
T Consensus 339 ~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 339 NWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 111 23455678999999875
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.3e-05 Score=80.64 Aligned_cols=267 Identities=13% Similarity=0.162 Sum_probs=143.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.|-|.|+.+ |..++--..+.+. .-.-.+||.|+|++|=.. ...|-+++... .- +.....-
T Consensus 283 ~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-----------~~sisIyEtps--f~-lld~Ksl 344 (698)
T KOG2314|consen 283 QLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-----------GNSISIYETPS--FM-LLDKKSL 344 (698)
T ss_pred eEEEEEccc----cchhcceeccCCCccccceEEeccCCceeEEec-----------cceEEEEecCc--ee-eeccccc
Confidence 467888877 7655543233333 233568999999988753 24566665433 11 1111111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+. ++.++.|||-+..|||.+++..... .++-++.
T Consensus 345 ki~-gIr~FswsP~~~llAYwtpe~~~~p--------------------------------------------arvtL~e 379 (698)
T KOG2314|consen 345 KIS-GIRDFSWSPTSNLLAYWTPETNNIP--------------------------------------------ARVTLME 379 (698)
T ss_pred CCc-cccCcccCCCcceEEEEcccccCCc--------------------------------------------ceEEEEe
Confidence 112 3889999999999999976533221 2333444
Q ss_pred c-CC-Cce--ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 164 L-DG-TAK--DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 164 l-~g-~~~--~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
+ ++ +.+ .|.+- ....+-|-..|++|.|...+..-.. .....+++.++.+.-+.+ .+...+..
T Consensus 380 vPs~~~iRt~nlfnV-sDckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI-pve~velk--------- 445 (698)
T KOG2314|consen 380 VPSKREIRTKNLFNV-SDCKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI-PVEVVELK--------- 445 (698)
T ss_pred cCccceeeeccceee-eccEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC-Cceeeecc---------
Confidence 4 33 221 12111 2235679999999988776543210 001123455555543321 11111111
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~ 318 (706)
..+..|+|-|.|.. .+.+..... ..+-..|.+.. ..++++-+... ......+.|||.|+.++.+.-
T Consensus 446 --e~vi~FaWEP~gdk-F~vi~g~~~-------k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 446 --ESVIAFAWEPHGDK-FAVISGNTV-------KNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred --hheeeeeeccCCCe-EEEEEcccc-------ccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence 11447899999998 554532211 11123555553 23344333222 355678899999999887653
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
. +..+.|+.+|.+-..-+.... ...+....+.|.|.|+|++..+
T Consensus 513 ~-s~~g~l~F~D~~~a~~k~~~~--------~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 513 V-SRRGDLEFYDTDYADLKDTAS--------PEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c-ccccceEEEecchhhhhhccC--------ccccccccceECCCCCEEEEee
Confidence 3 355678888876311111111 1133445678999999988776
No 169
>COG0627 Predicted esterase [General function prediction only]
Probab=98.50 E-value=2.5e-06 Score=85.99 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=78.1
Q ss_pred HcCCCCCC--cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC---------CCCcc------------------
Q 005240 595 RRGVADPS--RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---------LTPFG------------------ 645 (706)
Q Consensus 595 ~~~~id~~--~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~---------~~~~~------------------ 645 (706)
+...++.+ +.+|.|+||||+.|+.+++++|++|+.+++++|+.+.. ..++.
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~~~G~~~~~~w~~ 222 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQE 222 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHHhcCCCccccccc
Confidence 33445653 99999999999999999999999999999999987654 21100
Q ss_pred ------------ch-------------------------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 005240 646 ------------FQ-------------------------------AERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682 (706)
Q Consensus 646 ------------~~-------------------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 682 (706)
.. ...+.++|++.|.+..+..+++..|.+.. +..
T Consensus 223 ~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~---w~~ 299 (316)
T COG0627 223 NDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF---WAS 299 (316)
T ss_pred cCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---HHH
Confidence 00 11788899999999999999999998653 567
Q ss_pred HHHHHHHHHHHHhcc
Q 005240 683 VIWETDRWLQKYCLS 697 (706)
Q Consensus 683 ~~~~~~~f~~~~l~~ 697 (706)
.++.++.|+.+.|..
T Consensus 300 ~l~~~~~~~a~~l~~ 314 (316)
T COG0627 300 QLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888898887753
No 170
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.50 E-value=9.6e-06 Score=85.39 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=52.1
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCcee
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFC 628 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~ 628 (706)
+.+|.|+.++.+ |+|.+... ....+...+|+.+.++.+ ...++.++|||+||.+++.++. ++|++++
T Consensus 112 ~~~~~via~Dl~---G~G~S~~~~~~~~~~~~~a~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~ 182 (360)
T PLN02679 112 AKNYTVYAIDLL---GFGASDKPPGFSYTMETWAELILDFLEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVR 182 (360)
T ss_pred hcCCEEEEECCC---CCCCCCCCCCccccHHHHHHHHHHHHHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcC
Confidence 458999986665 56655332 122345556666655543 2368999999999999988887 4689999
Q ss_pred EEEeccC
Q 005240 629 CGIARSG 635 (706)
Q Consensus 629 a~v~~~~ 635 (706)
++|..++
T Consensus 183 ~LVLi~~ 189 (360)
T PLN02679 183 GLVLLNC 189 (360)
T ss_pred EEEEECC
Confidence 9988774
No 171
>PTZ00420 coronin; Provisional
Probab=98.47 E-value=0.00016 Score=79.17 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=69.8
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|+|++..++.+.... ..|.+||+.+++........ ..+..++|+|||+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~D------------gtIrIWDl~tg~~~~~i~~~-------------~~V~SlswspdG~ 180 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFD------------SFVNIWDIENEKRAFQINMP-------------KKLSSLKWNIKGN 180 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCC------------CeEEEEECCCCcEEEEEecC-------------CcEEEEEECCCCC
Confidence 5688999999999886655432 37999999865432211111 1244789999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccc-c----ceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFR-S----VSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~-~----~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
. |+... . ...|.+||+ .+++. ..+..+.+... . ..|++|+.+|+.+.........|.+
T Consensus 181 l-Lat~s-~-----------D~~IrIwD~---Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 181 L-LSGTC-V-----------GKHMHIIDP---RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred E-EEEEe-c-----------CCEEEEEEC---CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 5 43221 1 124788888 44443 33433333221 1 2345898888876544333335777
Q ss_pred EcCCC
Q 005240 329 VCPGS 333 (706)
Q Consensus 329 ~d~~~ 333 (706)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 77765
No 172
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.47 E-value=4.2e-06 Score=88.87 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=50.9
Q ss_pred HCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
..+|.|+..+.+ |+|.+.. ..........++.. +.+. ++..++.++|||+||++++.++.++|++++++
T Consensus 155 ~~~~~v~~~d~~---g~G~s~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~l 225 (371)
T PRK14875 155 AAGRPVIALDLP---GHGASSKAVGAGSLDELAAAVLA----FLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVASL 225 (371)
T ss_pred hcCCEEEEEcCC---CCCCCCCCCCCCCHHHHHHHHHH----HHHh--cCCccEEEEeechHHHHHHHHHHhCchheeEE
Confidence 456999986654 4444422 12223333333333 3332 45678999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
++.+|.
T Consensus 226 v~~~~~ 231 (371)
T PRK14875 226 TLIAPA 231 (371)
T ss_pred EEECcC
Confidence 988764
No 173
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.47 E-value=1.6e-06 Score=90.96 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=66.2
Q ss_pred chHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
..++..|+++||.|+..+.++ .|.+.....+..-...|+.++++++.++. ...+|.++|||+||.+++.++..+|
T Consensus 84 ~~~~~~L~~~G~~V~~~D~~g---~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~ 158 (350)
T TIGR01836 84 RSLVRGLLERGQDVYLIDWGY---PDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYP 158 (350)
T ss_pred chHHHHHHHCCCeEEEEeCCC---CCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCc
Confidence 356788999999999866543 33322222222222355888899998764 3368999999999999999999999
Q ss_pred CceeEEEeccCCCC
Q 005240 625 HLFCCGIARSGSYN 638 (706)
Q Consensus 625 ~~~~a~v~~~~~~d 638 (706)
++++++++.++.++
T Consensus 159 ~~v~~lv~~~~p~~ 172 (350)
T TIGR01836 159 DKIKNLVTMVTPVD 172 (350)
T ss_pred hheeeEEEeccccc
Confidence 99999999998765
No 174
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.46 E-value=2e-06 Score=88.53 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=77.7
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
....+.+...+|..+.-. |...+ ++ . -|.||++||.+.. .......+..|.+.||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~-~---~~~lvliHG~~~~---------------~~~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA-D---GPPVLLLHGEPSW---------------SYLYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC-C---CCEEEEECCCCCc---------------hhhHHHHHHHHHhCCCEEEE
Confidence 555666665555443322 22222 11 1 2578999995321 00111334556678999999
Q ss_pred cCCCCcCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 561 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
++-+ |+|.+.... ...+...+|+.+.++.+ +..++.++||||||.+++.++.++|+++++++..++
T Consensus 79 ~Dl~---G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 79 PDLI---GFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred ECCC---CCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 6655 566553321 12344555555544433 346899999999999999999999999999998875
No 175
>PTZ00420 coronin; Provisional
Probab=98.45 E-value=4.5e-05 Score=83.37 Aligned_cols=114 Identities=8% Similarity=0.086 Sum_probs=71.8
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCc--ee-------ecccCCCccccccccceEEecCCcEE
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AK-------PLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~-------~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
.+..+.|+|+ ++.||..+. ++ .|.++++.++. .. .+..+.. .+..+.|+|++..+
T Consensus 76 ~V~~lafsP~~~~lLASgS~--------Dg--tIrIWDi~t~~~~~~~i~~p~~~L~gH~~-----~V~sVaf~P~g~~i 140 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSE--------DL--TIRVWEIPHNDESVKEIKDPQCILKGHKK-----KISIIDWNPMNYYI 140 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------CC--eEEEEECCCCCccccccccceEEeecCCC-----cEEEEEECCCCCeE
Confidence 5889999997 677766542 33 55555655321 11 1221222 37789999999876
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEee
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTA 179 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~ 179 (706)
+.++.. .+.|.++|+ +++ ...+.....+..
T Consensus 141 LaSgS~------------------------------------------------DgtIrIWDl~tg~~~~~i~~~~~V~S 172 (568)
T PTZ00420 141 MCSSGF------------------------------------------------DSFVNIWDIENEKRAFQINMPKKLSS 172 (568)
T ss_pred EEEEeC------------------------------------------------CCeEEEEECCCCcEEEEEecCCcEEE
Confidence 544211 146777788 453 333433356889
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (706)
++|+|||+.|+..... ..|.+||+.+++.
T Consensus 173 lswspdG~lLat~s~D-------------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEI 201 (568)
T ss_pred EEECCCCCEEEEEecC-------------CEEEEEECCCCcE
Confidence 9999999988765433 3799999986543
No 176
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.44 E-value=3.9e-06 Score=82.83 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=71.1
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+.+.+. ++.++...-..+.. ..+ .| +|++||=+.+ -..| ......|++ ...|.+
T Consensus 66 ~~~~v~i~--~~~~iw~~~~~~~~--~~~---~p-lVliHGyGAg-----------~g~f----~~Nf~~La~-~~~vya 121 (365)
T KOG4409|consen 66 SKKYVRIP--NGIEIWTITVSNES--ANK---TP-LVLIHGYGAG-----------LGLF----FRNFDDLAK-IRNVYA 121 (365)
T ss_pred ceeeeecC--CCceeEEEeecccc--cCC---Cc-EEEEeccchh-----------HHHH----HHhhhhhhh-cCceEE
Confidence 34445444 45566655555553 222 45 6668873211 0111 122334444 666766
Q ss_pred cCCCCcCCCCCCCCchhh--HHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 561 GPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~--~~~~~~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
. +-.|+|++.+..-- ......-+.+.++ |-.+.+ + .+..|+|||+|||++...|.++|++++-+|+..|.
T Consensus 122 i---DllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~-L--~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 122 I---DLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG-L--EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred e---cccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC-C--cceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 3 33356666543100 0111112223333 444444 3 58999999999999999999999999999988875
No 177
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.42 E-value=0.0002 Score=71.60 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=110.8
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc-ceeeecCCCc
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPS 255 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~~spdg~~ 255 (706)
...+.+|.|||++++.... | ...+-++|+..+++..-...++.... ++ .+.+ .....-||+-
T Consensus 97 ~~~~~ls~dgk~~~V~N~T-P----------a~SVtVVDl~~~kvv~ei~~PGC~~i---yP---~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFT-P----------ATSVTVVDLAAKKVVGEIDTPGCWLI---YP---SGNRGFSMLCGDGSL 159 (342)
T ss_dssp GGGEEE-TTSSEEEEEEES-S----------SEEEEEEETTTTEEEEEEEGTSEEEE---EE---EETTEEEEEETTSCE
T ss_pred ccceEEccCCcEEEEEccC-C----------CCeEEEEECCCCceeeeecCCCEEEE---Ee---cCCCceEEEecCCce
Confidence 3467899999999766544 3 36899999998887665555543211 01 1111 2233445542
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eee-----cccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK-----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~-----~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
..+ .+|. .|+..+ .+. .+..+..+.++.++..++|.+ -...||.+
T Consensus 160 --~~v-------------------~Ld~----~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~ 210 (342)
T PF06433_consen 160 --LTV-------------------TLDA----DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSA 210 (342)
T ss_dssp --EEE-------------------EETS----TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEE
T ss_pred --EEE-------------------EECC----CCCEeEeeccccCCCCcccccccceECCCCeEEEEe----cCCEEEEE
Confidence 211 1221 233321 111 122344566777777777765 34479999
Q ss_pred cCCCCCCCceeeecCcccc-c----ccCCCCCc-eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC
Q 005240 330 CPGSKDVAPRVLFDRVFEN-V----YSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 403 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~-~----~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~ 403 (706)
|+.+.. ++....++.-. . .=.||..+ +++.+...+|++.-... ..|...++ -.++|.+|++
T Consensus 211 dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g----------~~gsHKdp-gteVWv~D~~ 277 (342)
T PF06433_consen 211 DLSGDS--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG----------GEGSHKDP-GTEVWVYDLK 277 (342)
T ss_dssp EETTSS--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE------------TT-TTS--EEEEEEEETT
T ss_pred eccCCc--ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC----------CCCCccCC-ceEEEEEECC
Confidence 998843 33332221100 0 00344443 33444444444322100 12223333 3479999999
Q ss_pred CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 404 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 404 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
+++..+.+..+.. ..++.+|.|.+=++|..+.. -..++++|..+|+..+-
T Consensus 278 t~krv~Ri~l~~~------------~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 278 THKRVARIPLEHP------------IDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TTEEEEEEEEEEE------------ESEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEEE
T ss_pred CCeEEEEEeCCCc------------cceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEee
Confidence 9986555554331 12467888888677765443 25799999999876554
No 178
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.41 E-value=1.2e-06 Score=85.28 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+..| ++||.|+..+.+ |+|.+... ....+..++|+..+++.+ ...++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIAFDLP---GHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEEEECT---TSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEEEecC---CccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45556 589999986665 45555442 223445556665555443 22789999999999999999999
Q ss_pred CCCceeEEEeccCCCC
Q 005240 623 APHLFCCGIARSGSYN 638 (706)
Q Consensus 623 ~p~~~~a~v~~~~~~d 638 (706)
+|+++++++..+|...
T Consensus 87 ~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPP 102 (228)
T ss_dssp SGGGEEEEEEESESSS
T ss_pred cccccccceeeccccc
Confidence 9999999999998874
No 179
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.40 E-value=1.7e-06 Score=89.00 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=70.6
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.+...||..+....+-++ + -+.||++||++... . .......+...+|.|+.++.+
T Consensus 8 ~~~~~~~~~l~y~~~g~~-----~---~~~lvllHG~~~~~-------------~---~~~~~~~~~~~~~~vi~~D~~- 62 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP-----D---GKPVVFLHGGPGSG-------------T---DPGCRRFFDPETYRIVLFDQR- 62 (306)
T ss_pred eEEcCCCcEEEEEECcCC-----C---CCEEEEECCCCCCC-------------C---CHHHHhccCccCCEEEEECCC-
Confidence 344446777765443221 1 13478899975210 0 011222344578999986665
Q ss_pred cCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 566 IIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 566 ~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|+|.+.... ....+...|+...++++ +.+++.++|+||||++++.++.++|++++++|..++
T Consensus 63 --G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~ 128 (306)
T TIGR01249 63 --GCGKSTPHACLEENTTWDLVADIEKLREKL------GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGI 128 (306)
T ss_pred --CCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecc
Confidence 455554321 12233444444433332 336799999999999999999999999988887754
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=5.9e-06 Score=80.57 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEecCCcEEEEEe
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.|....+.+.+|.+||..++-++ -+...|.++|+++|...+|- .+.+ +++.+.|||||.+|+..+
T Consensus 192 ~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 192 DPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred CCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEec
Confidence 34455789999999999998766 45578889999999888886 2332 378899999999887664
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCCceEeeeeeCC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTPAVYTAVEPSP 184 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~~~~~~~~~Sp 184 (706)
.+ ....||-..-. ...+.+...+.+....|||
T Consensus 258 ~d-----------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 258 CD-----------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred cc-----------------------------------------------ceeeeehhcccceecceeccCCceeeeeecC
Confidence 32 01233311111 1222233235778889999
Q ss_pred CCcEEEEEeeccC
Q 005240 185 DQKYVLITSMHRP 197 (706)
Q Consensus 185 DG~~i~~~~~~~~ 197 (706)
+|++|+|+....+
T Consensus 291 cGsfLLf~~sgsp 303 (445)
T KOG2139|consen 291 CGSFLLFACSGSP 303 (445)
T ss_pred CCCEEEEEEcCCc
Confidence 9999999887653
No 181
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.39 E-value=5e-06 Score=82.09 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=48.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
+.+|.|+..+.+ |+|.+..... .++...++.+.+. + ..++.++||||||++++.++.++|++++++|.
T Consensus 28 ~~~~~vi~~d~~---G~G~s~~~~~------~~~~~~~~~~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHLVDLP---GHGRSRGFGP------LSLADAAEAIAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEEecCC---cCccCCCCCC------cCHHHHHHHHHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 467999986665 4554422111 1122233333332 2 26899999999999999999999999999887
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
.++.
T Consensus 96 ~~~~ 99 (245)
T TIGR01738 96 VASS 99 (245)
T ss_pred ecCC
Confidence 7653
No 182
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=6.4e-06 Score=78.83 Aligned_cols=252 Identities=13% Similarity=0.147 Sum_probs=138.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-c---cccccccceEEecCCcEEEEEec
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-I---CLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~---~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
..+..++|||||++|+..+- +|.-++| |-.+|+.++-..... + .....+..+.||.|.+.|+..+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSv--------DGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSV--------DGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred cchhheeeCCCCceEeeccc--------cceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 35677899999999987653 5555665 555676554221111 0 11223556778888888775432
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC--ceEeeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--AVYTAVEP 182 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~--~~~~~~~~ 182 (706)
.+.|-++.+ +|+ .++.... ..+.++.|
T Consensus 284 -------------------------------------------------DGkIKvWri~tG~ClRrFdrAHtkGvt~l~F 314 (508)
T KOG0275|consen 284 -------------------------------------------------DGKIKVWRIETGQCLRRFDRAHTKGVTCLSF 314 (508)
T ss_pred -------------------------------------------------CCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence 145555555 664 3444322 57889999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|.|+..|+-.+.+ ..+.+--+.+++. |....+.. ..+....|++||.. |.-.
T Consensus 315 SrD~SqiLS~sfD-------------~tvRiHGlKSGK~--LKEfrGHs----------Syvn~a~ft~dG~~-iisa-- 366 (508)
T KOG0275|consen 315 SRDNSQILSASFD-------------QTVRIHGLKSGKC--LKEFRGHS----------SYVNEATFTDDGHH-IISA-- 366 (508)
T ss_pred ccCcchhhccccc-------------ceEEEeccccchh--HHHhcCcc----------ccccceEEcCCCCe-EEEe--
Confidence 9999999765544 3566666664432 22222211 11235689999987 4322
Q ss_pred ccCCCCccccCccceeeeecCCCCCCC-CceEEe--ecccccccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILH--KLDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~--~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
... +.+.+|+. .++ ...... ..+..+.++-..|.+ ..++.. + ..+.+|++++.+. -.
T Consensus 367 SsD----------gtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-N---rsntv~imn~qGQ--vV 427 (508)
T KOG0275|consen 367 SSD----------GTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC-N---RSNTVYIMNMQGQ--VV 427 (508)
T ss_pred cCC----------ccEEEecC---cchhhhhhccCCCCcccceeEEEcCCCCceEEEE-c---CCCeEEEEeccce--EE
Confidence 111 23556655 222 222221 234455555555654 334432 1 3456999999872 22
Q ss_pred eeeecCcccccccCCCCCc-eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 339 RVLFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
+....+.-+ -|.|. -..||.|.|+|.... ...||.+...+|+.++.....
T Consensus 428 rsfsSGkRE-----gGdFi~~~lSpkGewiYcigE---------------------D~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 428 RSFSSGKRE-----GGDFINAILSPKGEWIYCIGE---------------------DGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eeeccCCcc-----CCceEEEEecCCCcEEEEEcc---------------------CcEEEEEEeecCceeeeeecc
Confidence 222222111 12231 335889988877641 125778888888887765544
No 183
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.38 E-value=1.8e-06 Score=86.39 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=83.2
Q ss_pred eEEEEEEcc-CCeEEEEEEEecCCCCCC-CCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 482 KEMIKYQRK-DGVPLTATLYLPPGYDQS-KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 482 ~~~~~~~~~-dg~~i~~~l~~P~~~~~~-~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+++... .+.+++..++.|...... ..+++|+|++.||-+. . ..+ +...++.|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs--------~---~~~----f~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS--------Y---VTG----FAWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC--------C---ccc----hhhhHHHHhhCceEEE
Confidence 445555543 366888899999864320 0146899999999531 0 111 2245788999999998
Q ss_pred EcCCCCcCCCCCCCC--------chhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 560 AGPSIPIIGEGDKLP--------NDRFVEQLVSSAEAAVEEVVRR---G----VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~--------~~~~~~~~~~D~~~~~~~l~~~---~----~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
.++.-++. .|.... ....+.+...|+...+++|.+. + .+|+.||++.|||+||+.++.++...
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccc
Confidence 85543322 111111 1112234577899999999887 4 38999999999999999999887544
No 184
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.38 E-value=3.1e-06 Score=83.29 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC-cCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~-~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-+||+|-| ..++.... .+....+..|...||.|+...-+. ..|+|.. ..+..++|+..+|+|
T Consensus 34 ~~llfIGG-----------LtDGl~tv-pY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~y 96 (303)
T PF08538_consen 34 NALLFIGG-----------LTDGLLTV-PYLPDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEY 96 (303)
T ss_dssp SEEEEE-------------TT--TT-S-TCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHH
T ss_pred cEEEEECC-----------CCCCCCCC-chHHHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHH
Confidence 47888866 34443322 122244555656899998744432 3355543 466779999999999
Q ss_pred HHHcC--CCCCCcEEEEEechHHHHHHHHHHhCC-----CceeEEEeccCCCCCC
Q 005240 593 VVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAP-----HLFCCGIARSGSYNKT 640 (706)
Q Consensus 593 l~~~~--~id~~~i~i~G~S~GG~~a~~~~~~~p-----~~~~a~v~~~~~~d~~ 640 (706)
|+... .-..++|.+||||-|..-++.++.+.. ..+.++|+.+|+.|..
T Consensus 97 lr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 97 LRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp HHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TT
T ss_pred HHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChh
Confidence 99872 235689999999999999999987762 5699999999998854
No 185
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5.5e-05 Score=78.27 Aligned_cols=236 Identities=15% Similarity=0.165 Sum_probs=139.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc---cC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF---ES 80 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt---~~ 80 (706)
-+++.++++.. -.+....|. ...++...+||-+..-..+...++ .........||.+. ..+....+. ++
T Consensus 145 ~nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyvPe-~kGaPa~vri~~~~-~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 145 SNEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYVPE-KKGAPASVRIYKYP-EEGQHQPVANKSFF 216 (566)
T ss_pred cceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEccC-CCCCCcEEEEeccc-cccccchhhhcccc
Confidence 35778888855 333333332 335788899997554433333222 12223446677666 333333332 12
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
..+ --.+.|.+-|.-|++.+..+- |.....|++...||
T Consensus 217 kad-----kvqm~WN~~gt~LLvLastdV-------------------------------------Dktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 217 KAD-----KVQMKWNKLGTALLVLASTDV-------------------------------------DKTNASYYGEQTLY 254 (566)
T ss_pred ccc-----eeEEEeccCCceEEEEEEEee-------------------------------------cCCCccccccceEE
Confidence 211 226789998987666532111 11112245778999
Q ss_pred EEccCCC--ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 161 LGSLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 161 ~~~l~g~--~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+++.+|+ ..+|...+.+.++.|||+|+..++...-.+ ..+-++|+.+..+-.+..++..
T Consensus 255 ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP-----------Akvtifnlr~~~v~df~egpRN-------- 315 (566)
T KOG2315|consen 255 LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP-----------AKVTIFNLRGKPVFDFPEGPRN-------- 315 (566)
T ss_pred EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc-----------ceEEEEcCCCCEeEeCCCCCcc--------
Confidence 9999883 345554588999999999999888776653 5788999998866555444321
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~ 317 (706)
.+-|+|.|+. |++. --.+ -.+.+-+||+ .. .+.|... ........|+|||.+|+.+.
T Consensus 316 -------~~~fnp~g~i-i~lA-GFGN--------L~G~mEvwDv---~n--~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 316 -------TAFFNPHGNI-ILLA-GFGN--------LPGDMEVWDV---PN--RKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred -------ceEECCCCCE-EEEe-ecCC--------CCCceEEEec---cc--hhhccccccCCceEEEEcCCCcEEEEEe
Confidence 6789999985 4433 1111 2234667787 32 4445443 33445678999999998765
Q ss_pred ec----cccceEEEEEc
Q 005240 318 WY----KTSQTRTWLVC 330 (706)
Q Consensus 318 ~~----~~~~~~l~~~d 330 (706)
.. -+...+||-+.
T Consensus 374 TaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ccccEEecCCeEEEEec
Confidence 32 23444555554
No 186
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.35 E-value=0.00021 Score=68.46 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=135.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+...+|+|||..+|-. ....+|+++++.+-. ...+.-+.+ .+-.+.|.+|+..|+..+.+
T Consensus 49 eI~~~~F~P~gs~~aSg----------G~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~gtD-- 111 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASG----------GSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCGTD-- 111 (338)
T ss_pred eEEEEEECCCCCeEeec----------CCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEecCC--
Confidence 56778999999999875 334788888865432 222322222 37789999999998876421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG 186 (706)
.+++.+|+ +| ..++.... ..+..+.-+.=|
T Consensus 112 -----------------------------------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 112 -----------------------------------------------KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred -----------------------------------------------ceEEEEecccceeeehhccccceeeecCccccC
Confidence 57888999 77 45555444 455566655566
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
-.++-+... ..++.+||+-.+...++..... ....+.|.-++.+ +. . ++
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~ky-------------qltAv~f~d~s~q-v~-s----gg 193 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENKY-------------QLTAVGFKDTSDQ-VI-S----GG 193 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccce-------------eEEEEEecccccc-ee-e----cc
Confidence 666554433 2589999988655433322111 1225577766665 21 1 11
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 346 (706)
- .+.|.+||+. .+...-.|......+..+.-|++|..+...+.+ ...++|-+-.--.......++....
T Consensus 194 I-------dn~ikvWd~r--~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd--~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 194 I-------DNDIKVWDLR--KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD--NTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred c-------cCceeeeccc--cCcceEEeecccCceeeEEeccCCCcccccccc--ceEEEEEecccCCCCceEEEeecch
Confidence 1 1236677762 222233455566778889999999988865433 2344554433332111133444433
Q ss_pred cccccCCCCCceEeccCCCEEEEee
Q 005240 347 ENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..... ....-+|||+++.+-+..
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGS 285 (338)
T ss_pred hhhhh--hcceeeccCCCCcccccc
Confidence 22211 122356999999887654
No 187
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.34 E-value=6.3e-06 Score=83.72 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPND-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.+.+.||.|+.++.+ |+|.+.... ...+...+|+.+.++.+ +..++.++||||||.+++.++.++|
T Consensus 48 ~l~~~g~~vi~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p 118 (288)
T TIGR01250 48 LLKEEGREVIMYDQL---GCGYSDQPDDSDELWTIDYFVDELEEVREKL------GLDKFYLLGHSWGGMLAQEYALKYG 118 (288)
T ss_pred HHHhcCCEEEEEcCC---CCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeehHHHHHHHHHHhCc
Confidence 334459999996665 444443221 12344455554443322 3456999999999999999999999
Q ss_pred CceeEEEeccCC
Q 005240 625 HLFCCGIARSGS 636 (706)
Q Consensus 625 ~~~~a~v~~~~~ 636 (706)
+++++++..++.
T Consensus 119 ~~v~~lvl~~~~ 130 (288)
T TIGR01250 119 QHLKGLIISSML 130 (288)
T ss_pred cccceeeEeccc
Confidence 999999987764
No 188
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.33 E-value=7.2e-06 Score=82.95 Aligned_cols=221 Identities=10% Similarity=0.098 Sum_probs=130.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+|+++-. .++-.+...++.. .+..+.||++|..+.-++. ...|-++|+++|+..+-......
T Consensus 238 ~vklW~vy~--~~~~lrtf~gH~k--~Vrd~~~s~~g~~fLS~sf----------D~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 238 LVKLWNVYD--DRRCLRTFKGHRK--PVRDASFNNCGTSFLSASF----------DRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred eEEEEEEec--Ccceehhhhcchh--hhhhhhccccCCeeeeeec----------ceeeeeeccccceEEEEEecCCC--
Confidence 578888865 3344444443333 4889999999999976643 36777889999986654333322
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
+..+.+.||+..+++... ....|..+|.
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 456788999965555421 1146777787
Q ss_pred CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+|+. +..... +.+..+.|-|+|++.+-++... .+.+|+.......++........+|
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~hsmP-------- 389 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEMHTMP-------- 389 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhhccCc--------
Confidence 6643 333333 6788999999999988666543 5677776644333332222222233
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC-CCCCCceEEee--cccccccceecCCCceEEEEeec
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP-AEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
.+.-+|+++. ++ .+... +.|++..+.+ +.-...++... ..+.-..+.|||||.+|+...
T Consensus 390 ---~~~~~P~~~~-~~---aQs~d---------N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd-- 451 (503)
T KOG0282|consen 390 ---CLTLHPNGKW-FA---AQSMD---------NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD-- 451 (503)
T ss_pred ---ceecCCCCCe-eh---hhccC---------ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec--
Confidence 5567777775 22 11111 1233333311 11112222222 245566788999999998764
Q ss_pred cccceEEEEEcCCCC
Q 005240 320 KTSQTRTWLVCPGSK 334 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~ 334 (706)
....++.+|..+.
T Consensus 452 --sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 452 --SDGKVNFWDWKTT 464 (503)
T ss_pred --CCccEEEeechhh
Confidence 4457888988773
No 189
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.32 E-value=1.2e-05 Score=79.73 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=117.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..++|+|+|++|...+. .|...||-. .+=.-+-+ -.+.. .++...||++|.+++....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLWNg--~~fnFEtilQaHDs-----~Vr~m~ws~~g~wmiSgD~---- 158 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLWNG--TSFNFETILQAHDS-----PVRTMKWSHNGTWMISGDK---- 158 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEecC--ceeeHHHHhhhhcc-----cceeEEEccCCCEEEEcCC----
Confidence 4778899999999988764 566777732 11111111 11222 2788999999998775421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC--ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~ 187 (706)
.+-|..++.+- .++.+... ..++.++|||.-.
T Consensus 159 ---------------------------------------------gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 159 ---------------------------------------------GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ---------------------------------------------CceEEecccchhhhHHhhHhhhhhhheeccCCCCc
Confidence 13333444422 12222222 5678999999555
Q ss_pred EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
..+--+.+ ..|.+||.- .++.+.| .+.+.+ ++.+.|.|... |++.. +
T Consensus 194 kF~t~SdD-------------g~ikiWdf~~~kee~vL-~GHgwd------------VksvdWHP~kg--Liasg----s 241 (464)
T KOG0284|consen 194 KFLTCSDD-------------GTIKIWDFRMPKEERVL-RGHGWD------------VKSVDWHPTKG--LIASG----S 241 (464)
T ss_pred eeEEecCC-------------CeEEEEeccCCchhhee-ccCCCC------------cceeccCCccc--eeEEc----c
Confidence 54333322 478999987 4555555 444332 56789999876 43331 1
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+. ..|.+||.. .+.++-.|..+...+..+.|+|++.+|+..+.+. .+-++|+.+
T Consensus 242 kD-------nlVKlWDpr--Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~ 295 (464)
T KOG0284|consen 242 KD-------NLVKLWDPR--SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRT 295 (464)
T ss_pred CC-------ceeEeecCC--CcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhH
Confidence 11 147788862 4556666777788889999999999888765322 355666553
No 190
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.31 E-value=0.00017 Score=71.56 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=86.8
Q ss_pred ceEEEEccCC-CceecCCCceEeeeeeC-CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~~~~~~~~~S-pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
.+|++++.++ +.+.+.... ...+.+. +|| .|++.... .+.++|+.+++.+.+..........
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSG--------------GIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETT--------------CEEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcC--------------ceEEEecCCCcEEEEeeccCCCccc
Confidence 6899999965 444344333 5566666 665 55555432 4566698888888776652111001
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
....++.+.|+|+ ||+........... ..+.||+++. + ++.+.+...-.....+.|+||++.|+
T Consensus 86 -------~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 86 -------NRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp -------EEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred -------CCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECC---C-CeEEEEecCcccccceEECCcchhee
Confidence 1233778999997 77664332221111 1156899887 4 56666665556667899999999888
Q ss_pred EEeeccccceEEEEEcCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~ 334 (706)
+... ...+||+++++..
T Consensus 150 v~ds---~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDAD 166 (246)
T ss_dssp EEET---TTTEEEEEEEETT
T ss_pred eccc---ccceeEEEecccc
Confidence 7542 3456999998753
No 191
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.30 E-value=0.00029 Score=82.56 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=110.3
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEec-CCcEEEEEecCC
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~ 108 (706)
.+....|+|. +++||... ....|.++|+.+++..... .+.. .+..+.|+| |+..|+..+.
T Consensus 534 ~v~~l~~~~~~~~~las~~----------~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~-- 596 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN----------FEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSD-- 596 (793)
T ss_pred ceeeEEeccCCCCEEEEEe----------CCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcC--
Confidence 4677899885 66665543 2357777888877544332 2222 277899996 7887776532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEeeeee-CCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEP-SPD 185 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~~~~-SpD 185 (706)
.+.|.++|+ ++. ...+.....+..+.| +++
T Consensus 597 -----------------------------------------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 597 -----------------------------------------------DGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred -----------------------------------------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 146777777 442 233332345667788 467
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|+.|+..+.. ..|.+||+.... ...+..+. ..+..+.|+ ++.. |+-. ..
T Consensus 630 g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~~h~-------------~~V~~v~f~-~~~~-lvs~-s~ 680 (793)
T PLN00181 630 GRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMIGHS-------------KTVSYVRFV-DSST-LVSS-ST 680 (793)
T ss_pred CCEEEEEeCC-------------CeEEEEECCCCCccceEecCCC-------------CCEEEEEEe-CCCE-EEEE-EC
Confidence 8888766543 379999987543 22222111 123466776 5554 4322 11
Q ss_pred cCCCCccccCccceeeeecCCCC----CCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPA----EGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~----~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.+.|.+||+... .......+..+...+..+.|+|++.+|+..+.+ + .+++++...
T Consensus 681 -----------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--~--~v~iw~~~~ 739 (793)
T PLN00181 681 -----------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--N--EVFVYHKAF 739 (793)
T ss_pred -----------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--C--EEEEEECCC
Confidence 124667776210 011233444455566778899999988876522 3 355555444
No 192
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.0013 Score=68.32 Aligned_cols=325 Identities=13% Similarity=0.134 Sum_probs=164.2
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
.....+|++|+.+||.. ...+++.+...+. ..++..... +..+.+||-|.+|.-..+.....
T Consensus 37 ~~v~~~S~~G~lfA~~~-----------~~~v~i~~~~~~~-~~lt~~~~~-----~~~L~fSP~g~yL~T~e~~~i~~- 98 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-----------NQVVKVFEIATLK-VVLCVELKK-----TYDLLFSPKGNYLLTWEPWAIYG- 98 (566)
T ss_pred ceeEEEcCCCcEEEEEc-----------CCeEEEEEccCCc-EEEEeccce-----eeeeeeccccccccccccccccc-
Confidence 45678999999999964 3678888877665 334433332 56778999998776442211100
Q ss_pred CCCCCCCCCCceeecCCCcccccccch----h--ccCCchhhhhhhhcccceEEEEccCC---CceecCCCceEeeeeeC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTD----N--LLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTPAVYTAVEPS 183 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~d~~~~~~~~~~~l~~~~l~g---~~~~lt~~~~~~~~~~S 183 (706)
+.-...+.-..+..+. ......|. . .+.++.|++.........++.+++.+ ...+|.. ..+..+.+|
T Consensus 99 ~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~-~~i~~f~lS 174 (566)
T KOG2315|consen 99 PKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV-SGITMLSLS 174 (566)
T ss_pred CCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec-cceeeEEec
Confidence 0000000000000000 00000010 1 34566667777766677888888754 2233332 356788888
Q ss_pred CCCc--EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 184 PDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 184 pDG~--~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|-+. .|++-.-... ..+..+.+|-.. .+....+..-. ++-. ..-.+.|.+-|...|+.+
T Consensus 175 pgp~~~~vAvyvPe~k--------GaPa~vri~~~~~~~~~~~~a~ks-------FFka---dkvqm~WN~~gt~LLvLa 236 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKK--------GAPASVRIYKYPEEGQHQPVANKS-------FFKA---DKVQMKWNKLGTALLVLA 236 (566)
T ss_pred CCCCCceEEEEccCCC--------CCCcEEEEeccccccccchhhhcc-------cccc---ceeEEEeccCCceEEEEE
Confidence 8754 4433221111 113455555543 11111111110 1100 012678999898844433
Q ss_pred Ee-ccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 261 EA-QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 261 ~~-~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
+. .|.... ..=....||.++. + |+-..+. .-.+.+.++.|+|+|+.+++.... ....+-++|+.+. +
T Consensus 237 stdVDktn~--SYYGEq~Lyll~t---~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr~~---~ 305 (566)
T KOG2315|consen 237 STDVDKTNA--SYYGEQTLYLLAT---Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLRGK---P 305 (566)
T ss_pred EEeecCCCc--cccccceEEEEEe---c-CceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCCCC---E
Confidence 21 121111 1112236888887 4 3333332 336788999999999988765422 3445777787762 2
Q ss_pred eeee-cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchh
Q 005240 339 RVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417 (706)
Q Consensus 339 ~~l~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 417 (706)
+--+ ++.... .-|+|-|.+|++.- -|..+ | .+-.+|+.+- +.|.....
T Consensus 306 v~df~egpRN~---------~~fnp~g~ii~lAG--------------FGNL~-G---~mEvwDv~n~--K~i~~~~a-- 354 (566)
T KOG2315|consen 306 VFDFPEGPRNT---------AFFNPHGNIILLAG--------------FGNLP-G---DMEVWDVPNR--KLIAKFKA-- 354 (566)
T ss_pred eEeCCCCCccc---------eEECCCCCEEEEee--------------cCCCC-C---ceEEEeccch--hhcccccc--
Confidence 2222 211111 44799999887763 11110 1 1334565542 22222211
Q ss_pred hhhhhhhhccCCCceecccCCCEEEEEEecC
Q 005240 418 YFETAVALVFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 418 ~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.+.....|+|||++|+....++
T Consensus 355 ---------~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 355 ---------ANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ---------CCceEEEEcCCCcEEEEEeccc
Confidence 1233578999999888765553
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.28 E-value=0.00015 Score=70.12 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
|..-++||+|... ++.. +...+ +.+|+||+ ..-+...+.-....+..+.|.|.-.+|+... +
T Consensus 320 g~g~lafs~Ds~y-~aTr---nd~~P-------nalW~Wdl---q~l~l~avLiQk~piraf~WdP~~prL~vct----g 381 (447)
T KOG4497|consen 320 GAGKLAFSCDSTY-AATR---NDKYP-------NALWLWDL---QNLKLHAVLIQKHPIRAFEWDPGRPRLVVCT----G 381 (447)
T ss_pred ccceeeecCCceE-Eeee---cCCCC-------ceEEEEec---hhhhhhhhhhhccceeEEEeCCCCceEEEEc----C
Confidence 3447899999875 4422 22222 35999998 3333333444466778899999988887754 5
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCC--CCceEeccCCCEEEEee
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG--SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~ 371 (706)
..+||...+.+. +.+--. .+| ...+.|.-+|..++...
T Consensus 382 ~srLY~W~psg~----~~V~vP-------~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 382 KSRLYFWAPSGP----RVVGVP-------KKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred CceEEEEcCCCc----eEEecC-------CCCceeeeEEecCCCcEEEEEc
Confidence 668999988872 332100 111 11255777777766553
No 194
>PRK11071 esterase YqiA; Provisional
Probab=98.27 E-value=2.1e-05 Score=74.32 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
.+|.|++++-+ |++ . +..+.++.+.++. +.+++.++|+|+||++++.++.++|. + ++..
T Consensus 31 ~~~~v~~~dl~---g~~---------~----~~~~~l~~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQLP---PYP---------A----DAAELLESLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVV 89 (190)
T ss_pred CCCeEEeCCCC---CCH---------H----HHHHHHHHHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEE
Confidence 37988886654 231 1 2333344444432 23689999999999999999999973 3 3566
Q ss_pred cCCCC
Q 005240 634 SGSYN 638 (706)
Q Consensus 634 ~~~~d 638 (706)
+|..+
T Consensus 90 ~~~~~ 94 (190)
T PRK11071 90 NPAVR 94 (190)
T ss_pred CCCCC
Confidence 66655
No 195
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.00031 Score=67.67 Aligned_cols=259 Identities=14% Similarity=0.064 Sum_probs=138.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-eeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.....+||+-|.+||.... + ..|.++|..|-. .+-++.+-.. +.++.||+||+.|+..+.+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~--------n--G~vvI~D~~T~~iar~lsaH~~p-----i~sl~WS~dgr~LltsS~D--- 86 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA--------N--GRVVIYDFDTFRIARMLSAHVRP-----ITSLCWSRDGRKLLTSSRD--- 86 (405)
T ss_pred ccceEEeccCcceeeeecc--------C--CcEEEEEccccchhhhhhccccc-----eeEEEecCCCCEeeeecCC---
Confidence 3667899999999999764 3 466667776643 3444433332 7799999999988865421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..+-++|+ +| -.+++-....+....|.|-.+.
T Consensus 87 ----------------------------------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n 120 (405)
T KOG1273|consen 87 ----------------------------------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN 120 (405)
T ss_pred ----------------------------------------------ceeEEEeccCCCceeEEEccCccceeeeccccCC
Confidence 46777788 77 4455555556677788885544
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
.++...-. ..-.+.++...+.+.|...+..+.... ...-.|.+.|+. |+.- .
T Consensus 121 ~~va~~~~------------~sp~vi~~s~~~h~~Lp~d~d~dln~s--------as~~~fdr~g~y-IitG-t------ 172 (405)
T KOG1273|consen 121 KCVATIME------------ESPVVIDFSDPKHSVLPKDDDGDLNSS--------ASHGVFDRRGKY-IITG-T------ 172 (405)
T ss_pred eEEEEEec------------CCcEEEEecCCceeeccCCCccccccc--------cccccccCCCCE-EEEe-c------
Confidence 43333221 123455555454555544432221110 001135566665 3311 1
Q ss_pred ccccCccceeeeecCCCCCCCCceE---EeecccccccceecCCCceEEEEeeccccceEEEEEc-CC--CCCCCceeee
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC-PG--SKDVAPRVLF 342 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d-~~--~~~~~~~~l~ 342 (706)
.++.+.++++ ++-+... ++. ...+-++.++-.|+.|++... ++..+.|.+. +. +..+++....
T Consensus 173 -----sKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNts--DRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 173 -----SKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTS--DRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred -----CcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecC--CceEEEEehhhhcccCccCCcChhH
Confidence 1123555666 3322211 111 245667788889998887543 2334444332 22 2223333221
Q ss_pred cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccc
Q 005240 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (706)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (706)
.++++.+.-.=...-+|.||.|+..... ....||......|+..++..+..
T Consensus 242 --K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 242 --KLQDVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred --HHHHHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1111110000001336889988877642 23357778888888888876654
No 196
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.25 E-value=1.2e-05 Score=86.38 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=76.5
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH---HCCeEEEEcC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAGP 562 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~ 562 (706)
.|.+..+..++.....|++. +. -|.||++||.+.. ...| .......|+ +.+|.|+.++
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~-~~----k~~VVLlHG~~~s-----------~~~W---~~~~~~~L~~~~~~~yrVia~D 239 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN-KA----KEDVLFIHGFISS-----------SAFW---TETLFPNFSDAAKSTYRLFAVD 239 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC-CC----CCeEEEECCCCcc-----------HHHH---HHHHHHHHHHHhhCCCEEEEEC
Confidence 34444567888888888752 11 2568889996421 0011 001112233 4799999966
Q ss_pred CCCcCCCCCCCCc--h-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLPN--D-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~~--~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+ |+|.+... . ...+...+|+.. .+.+. .+..++.++||||||++++.++.++|+++++++..++.
T Consensus 240 l~---G~G~S~~p~~~~ytl~~~a~~l~~---~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 240 LL---GFGRSPKPADSLYTLREHLEMIER---SVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred CC---CCCCCcCCCCCcCCHHHHHHHHHH---HHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 65 55555332 1 123334444421 22222 23468999999999999999999999999999998864
No 197
>PLN02965 Probable pheophorbidase
Probab=98.24 E-value=8.2e-06 Score=81.60 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
....|++.||.|++++.+ |+|.+... ....+...+|+.+.++.+ + + ..++.+.||||||.+++.++.++
T Consensus 22 ~~~~L~~~~~~via~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~ 93 (255)
T PLN02965 22 LATLLDAAGFKSTCVDLT---GAGISLTDSNTVSSSDQYNRPLFALLSDL---P-P-DHKVILVGHSIGGGSVTEALCKF 93 (255)
T ss_pred HHHHHhhCCceEEEecCC---cCCCCCCCccccCCHHHHHHHHHHHHHhc---C-C-CCCEEEEecCcchHHHHHHHHhC
Confidence 345567889999996554 55555322 122556677777776654 1 1 15899999999999999999999
Q ss_pred CCceeEEEeccCC
Q 005240 624 PHLFCCGIARSGS 636 (706)
Q Consensus 624 p~~~~a~v~~~~~ 636 (706)
|++++.+|..++.
T Consensus 94 p~~v~~lvl~~~~ 106 (255)
T PLN02965 94 TDKISMAIYVAAA 106 (255)
T ss_pred chheeEEEEEccc
Confidence 9999988887653
No 198
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.24 E-value=0.00023 Score=70.47 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=94.5
Q ss_pred CCeeeeecCCCC--CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp 96 (706)
+..+++.+.... .....+++||||+.+||+.. .++...||+....+.....++ .. .+..+.|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~-------~~~~~~L~~~~~~~~~~~~~~-g~------~l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSE-------GDGGRSLYVGPAGGPVRPVLT-GG------SLTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEE-------cCCCCEEEEEcCCCcceeecc-CC------ccccccccC
Confidence 666777654332 26889999999999999872 156789999976544433332 22 277899999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~ 174 (706)
+|...++.. . .. ...+++...+| ....+...
T Consensus 76 ~g~~W~v~~-~-~~---------------------------------------------~~~~~~~~~~g~~~~~~v~~~ 108 (253)
T PF10647_consen 76 DGWVWTVDD-G-SG---------------------------------------------GVRVVRDSASGTGEPVEVDWP 108 (253)
T ss_pred CCCEEEEEc-C-CC---------------------------------------------ceEEEEecCCCcceeEEeccc
Confidence 987544432 1 00 02222222334 33333322
Q ss_pred --c-eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC---CCeeEEcccCCCCCCCCcccCccCCCCccee
Q 005240 175 --A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (706)
Q Consensus 175 --~-~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 248 (706)
. .+..+.+||||.+|++...... ..+|++.-+. .+..+.|.....- ..+ .......+.
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~----------~~~v~va~V~r~~~g~~~~l~~~~~~-~~~-----~~~~v~~v~ 172 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG----------GGRVYVAGVVRDGDGVPRRLTGPRRV-APP-----LLSDVTDVA 172 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC----------CCeEEEEEEEeCCCCCcceeccceEe-ccc-----ccCcceeee
Confidence 2 6889999999999999886543 2466665443 2212222221100 000 001234789
Q ss_pred eecCCCceEEEEE
Q 005240 249 WRADKPSTLYWVE 261 (706)
Q Consensus 249 ~spdg~~~l~~~~ 261 (706)
|++++. |+++.
T Consensus 173 W~~~~~--L~V~~ 183 (253)
T PF10647_consen 173 WSDDST--LVVLG 183 (253)
T ss_pred ecCCCE--EEEEe
Confidence 999987 55553
No 199
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.23 E-value=6.6e-06 Score=82.59 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=61.9
Q ss_pred HHHHH-HCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 548 SLIFL-ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 548 ~~~l~-~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
...+. ..+|.|+..+..+. +..... ........+++...+++|.++..++.++|.++|||+||+++..++.+.|
T Consensus 58 ~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~ 134 (275)
T cd00707 58 RKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLN 134 (275)
T ss_pred HHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhc
Confidence 33344 46799988666432 111111 1122334567888888888764467789999999999999999999999
Q ss_pred CceeEEEeccCCC
Q 005240 625 HLFCCGIARSGSY 637 (706)
Q Consensus 625 ~~~~a~v~~~~~~ 637 (706)
++++.+++..|..
T Consensus 135 ~~v~~iv~LDPa~ 147 (275)
T cd00707 135 GKLGRITGLDPAG 147 (275)
T ss_pred CccceeEEecCCc
Confidence 9999999987753
No 200
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.23 E-value=6.9e-06 Score=82.83 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
.|.||++||.... . ..| ......|.+.||.|+.++-+ |+|.+... ....+...+++.+.
T Consensus 18 ~p~vvliHG~~~~----------~-~~w----~~~~~~L~~~g~~vi~~dl~---g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGG----------S-WCW----YKIRCLMENSGYKVTCIDLK---SAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCC----------c-CcH----HHHHHHHHhCCCEEEEeccc---CCCCCCCCcccCCCHHHHHHHHHHH
Confidence 3789999995321 1 111 13345677789999985554 44543221 12334444444443
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++ +.. ...++.+.||||||.++..++.++|++++++|..++.
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 33 322 2368999999999999999999999999999988663
No 201
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.23 E-value=1.7e-05 Score=84.63 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~ 589 (706)
.|.||++||.+.. ...+ ......|+ .+|.|+..+.+ |+|.+.... .......+.+...
T Consensus 105 ~p~vvllHG~~~~-----------~~~~----~~~~~~L~-~~~~vi~~D~r---G~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGAS-----------QGFF----FRNFDALA-SRFRVIAIDQL---GWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcc-----------hhHH----HHHHHHHH-hCCEEEEECCC---CCCCCCCCCcccccHHHHHHHHHHH
Confidence 4789999996421 0001 12233444 46999986665 455443221 0111111122222
Q ss_pred -HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 -VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 -~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+|+.+. +..++.++||||||++++.++.++|++++++|..+|.
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 2333332 4468999999999999999999999999998888754
No 202
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=7e-05 Score=72.04 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=89.4
Q ss_pred ceEEEEccCCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC---CC---eeEEcccCC
Q 005240 157 AQLVLGSLDGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GK---LVRELCDLP 228 (706)
Q Consensus 157 ~~l~~~~l~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~~~~ 228 (706)
+.|.++++.|+ ...+... ......+.||||+.|+..... .++.+|.+- .+ ++.++....
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-------------pDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-------------PDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC-------------CCceEEEEEeccCcchhhhhhhheec
Confidence 57888888883 4444433 445577899999999876554 367777653 12 233333333
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-------eeccccc
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRF 301 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~ 301 (706)
+.. .++..++|||+..+ ++-++ .++ . ..+|+.+.=|-.+ ..+..| .......
T Consensus 276 GH~----------saV~~~aFsn~S~r-~vtvS-kDG-~--wriwdtdVrY~~~------qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 276 GHQ----------SAVLAAAFSNSSTR-AVTVS-KDG-K--WRIWDTDVRYEAG------QDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred cch----------hheeeeeeCCCcce-eEEEe-cCC-c--EEEeeccceEecC------CCchHhhcCCcchhhcCCCc
Confidence 321 22446788888877 54332 221 1 1222222222221 222222 2222333
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee--eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV--LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
-.+..||.|+.|+... ...|-.++..+++..+.. +.... ...++|++||++++..-
T Consensus 335 ~RL~lsP~g~~lA~s~-----gs~l~~~~se~g~~~~~~e~~h~~~---------Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSF-----GSDLKVFASEDGKDYPELEDIHSTT---------ISSISYSSDGKYIATCG 392 (420)
T ss_pred eEEEeCCCCcEEEeec-----CCceEEEEcccCccchhHHHhhcCc---------eeeEEecCCCcEEeeec
Confidence 3667899999888753 224666666664321111 11111 23488999999987763
No 203
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=9.4e-05 Score=73.46 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCceeecccCCCcc-ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 62 LRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~-~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
..+.++|+++++.+.+....... -...+.+.+..|||+ |+++........
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~---------------------------- 110 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS---------------------------- 110 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTT----------------------------
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccc----------------------------
Confidence 34455599999888776542111 112255789999999 677643211110
Q ss_pred ccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-- 217 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 217 (706)
....+.||+++.+++.+.+... .....++|||||+.|+++.... ..|+.++++
T Consensus 111 ------------~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~------------~~i~~~~~~~~ 166 (246)
T PF08450_consen 111 ------------GIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFN------------GRIWRFDLDAD 166 (246)
T ss_dssp ------------CGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTT------------TEEEEEEEETT
T ss_pred ------------cccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccc------------ceeEEEecccc
Confidence 0011689999998876666555 5677999999999998876543 478998886
Q ss_pred CCe---eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 218 GKL---VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 218 ~~~---~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+.. .+.+........ .+..++...+|+ ||... . ..+.|++++. ++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~g----------~pDG~~vD~~G~--l~va~-~----------~~~~I~~~~p---~G~~~~~i 220 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPG----------YPDGLAVDSDGN--LWVAD-W----------GGGRIVVFDP---DGKLLREI 220 (246)
T ss_dssp TCCEEEEEEEEE-SSSSC----------EEEEEEEBTTS---EEEEE-E----------TTTEEEEEET---TSCEEEEE
T ss_pred ccceeeeeeEEEcCCCCc----------CCCcceEcCCCC--EEEEE-c----------CCCEEEEECC---CccEEEEE
Confidence 331 223322222110 123577888886 55432 2 1235788887 53333344
Q ss_pred eeccccccccee-cCCCceEEEEe
Q 005240 295 HKLDLRFRSVSW-CDDSLALVNET 317 (706)
Q Consensus 295 ~~~~~~~~~~~w-spDg~~l~~~~ 317 (706)
.-.......++| -+|.+.|+.++
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCCCEEEEEEECCCCCEEEEEe
Confidence 433357788888 46777777764
No 204
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.00017 Score=78.92 Aligned_cols=137 Identities=17% Similarity=0.272 Sum_probs=82.4
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCC-CC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPP-AE 231 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-~~ 231 (706)
..|.++++ ++ +.+.+-.. +.+..+.++|.|+.||.++.++ .+.+|+++.+... .|+...- .+
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG-------------~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG-------------KVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc-------------eEEEEEcccchhhhhcccCCcccc
Confidence 46777777 55 33333333 7889999999999999888764 7999999865433 2322211 01
Q ss_pred CCCcccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe-ec-ccccccceec
Q 005240 232 DIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-KL-DLRFRSVSWC 307 (706)
Q Consensus 232 ~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~-~~-~~~~~~~~ws 307 (706)
..- .. ...++|+|+|.+ +++... ++.|.+++. .+.+.. .|. .. ...+...+||
T Consensus 185 ~~~-------s~i~~~~aW~Pk~g~-la~~~~------------d~~Vkvy~r---~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 185 FIL-------SRICTRLAWHPKGGT-LAVPPV------------DNTVKVYSR---KGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred ccc-------cceeeeeeecCCCCe-EEeecc------------CCeEEEEcc---CCceeheeecccccccceEEEEEc
Confidence 000 01 126799999887 554421 123555555 444332 222 22 2337889999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|+|++|+.... .+.|-++|.++
T Consensus 242 PnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeecc----CCcEEEEeccc
Confidence 99999997642 23456666664
No 205
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.20 E-value=0.00037 Score=65.68 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=115.8
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-------Ce-eEEccc
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-------KL-VRELCD 226 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~-~~~l~~ 226 (706)
..+.+||+ +| +...+..+..+..+.||++|..+++.....- .++..|.++++.. .+ ..++..
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m--------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM--------GYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc--------CcceEEEEEEccCChhhhcccCceEEecC
Confidence 34556687 67 4445555567889999999999998876531 2246777777752 22 222222
Q ss_pred CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEE-eecccccccc
Q 005240 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EIL-HKLDLRFRSV 304 (706)
Q Consensus 227 ~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l-~~~~~~~~~~ 304 (706)
.+ .-+....|+|-++. |+.- . ..+.|-++|+ .+|+. ..- ..+...+.++
T Consensus 146 ~~-------------skit~a~Wg~l~~~-ii~G--h----------e~G~is~~da---~~g~~~v~s~~~h~~~Ind~ 196 (327)
T KOG0643|consen 146 PD-------------SKITSALWGPLGET-IIAG--H----------EDGSISIYDA---RTGKELVDSDEEHSSKINDL 196 (327)
T ss_pred Cc-------------cceeeeeecccCCE-EEEe--c----------CCCcEEEEEc---ccCceeeechhhhccccccc
Confidence 21 11225579999987 4422 1 1123667777 44432 221 2345688999
Q ss_pred eecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEe
Q 005240 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (706)
Q Consensus 305 ~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (706)
.+|+|..+++..+ .+....| +|..+-+...+-.++.+++... .+|--.+++..- +..-.
T Consensus 197 q~s~d~T~FiT~s--~Dttakl--~D~~tl~v~Kty~te~PvN~aa---------isP~~d~VilgG-----GqeA~--- 255 (327)
T KOG0643|consen 197 QFSRDRTYFITGS--KDTTAKL--VDVRTLEVLKTYTTERPVNTAA---------ISPLLDHVILGG-----GQEAM--- 255 (327)
T ss_pred cccCCcceEEecc--cCcccee--eeccceeeEEEeeeccccccee---------cccccceEEecC-----Cceee---
Confidence 9999999888765 2234444 4444422222333666665543 355555554431 11110
Q ss_pred cCCCCCCCCCCceeeeecCCCceee-eecccchhhhhhhhhhccCCCceecccCCCE
Q 005240 385 GRGFTPEGNIPFLDLFDINTGSKER-IWESNREKYFETAVALVFGQGEEDINLNQLK 440 (706)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~ 440 (706)
-+..-+...|+.+. ....--...+..+..+....+.++|+|||+.
T Consensus 256 -----------dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 256 -----------DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred -----------eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 01111122233221 1111111134456777777888999999973
No 206
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=9.4e-05 Score=80.85 Aligned_cols=203 Identities=13% Similarity=0.151 Sum_probs=123.3
Q ss_pred cceeEeecCCCCCCCCeee-eecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.++.... +.+.. |+-++. .....+++-||+++|+.+. ...|-+++++.+.....+.+...
T Consensus 76 ~tv~~y~fps----~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 76 NTVLRYKFPS----GEEDTILARFTL--PIRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred ceEEEeeCCC----CCccceeeeeec--cceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccCC
Confidence 4566666655 44442 221111 3668899999999999753 36777888776655555443322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.++|.|+.||..+- .+.|+.++
T Consensus 140 ----pVl~l~~~p~~~fLAvss~-------------------------------------------------dG~v~iw~ 166 (933)
T KOG1274|consen 140 ----PVLQLSYDPKGNFLAVSSC-------------------------------------------------DGKVQIWD 166 (933)
T ss_pred ----ceeeeeEcCCCCEEEEEec-------------------------------------------------CceEEEEE
Confidence 3778999999999998742 26777778
Q ss_pred c-CCC-ceecCCC---------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 164 L-DGT-AKDFGTP---------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 164 l-~g~-~~~lt~~---------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
+ ++. ...|+.- .....++|+|+|..+++...+ ..|.+|+.++-...-........
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d-------------~~Vkvy~r~~we~~f~Lr~~~~s- 232 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD-------------NTVKVYSRKGWELQFKLRDKLSS- 232 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC-------------CeEEEEccCCceeheeecccccc-
Confidence 7 552 2222211 235689999998888776654 36778888765432211111110
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
.....++|||.|++ |+-. ...+.|.+||. ++ ..+ ......+.-.+|-|+...
T Consensus 233 ---------s~~~~~~wsPnG~Y-iAAs------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 233 ---------SKFSDLQWSPNGKY-IAAS------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred ---------cceEEEEEcCCCcE-Eeee------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCe
Confidence 11236799999987 5521 12235778888 33 111 223455667789898777
Q ss_pred EEEEee
Q 005240 313 LVNETW 318 (706)
Q Consensus 313 l~~~~~ 318 (706)
|-+..+
T Consensus 285 it~~~~ 290 (933)
T KOG1274|consen 285 ITLITA 290 (933)
T ss_pred eEEEee
Confidence 666543
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.20 E-value=3.9e-05 Score=80.05 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=97.5
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
|-|++|..+|+.-. ..+.++.-+..+...+|.| |-.+||.... ++..+||.+...+......| ++.-+
T Consensus 605 iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~t--Pe~~l 673 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMT--PEKIL 673 (1012)
T ss_pred EEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCC--cceee
Confidence 55667766433221 1233344555788999999 9999998764 78899999987765432222 11100
Q ss_pred cc---cccceEEecCC-cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 86 NA---VFGSFVWVNNS-TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 86 ~~---~~~~~~wSpDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. -+-++.|.|=. ..|+..+ -...|-+
T Consensus 674 t~h~eKI~slRfHPLAadvLa~as-------------------------------------------------yd~Ti~l 704 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVAS-------------------------------------------------YDSTIEL 704 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhh-------------------------------------------------ccceeee
Confidence 00 02344454422 1222211 1146777
Q ss_pred Ecc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+|+ ++ .--+|... +.+-.++|||||++|+-+..++ .|++|+...++ +.+..+.+.
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-------------~~rVy~Prs~e-~pv~Eg~gp-------- 762 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-------------TLRVYEPRSRE-QPVYEGKGP-------- 762 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-------------eEEEeCCCCCC-CccccCCCC--------
Confidence 788 55 33345545 7889999999999999776553 78888887553 333333332
Q ss_pred ccCCCC--cceeeecCCCc
Q 005240 239 SVREGM--RSISWRADKPS 255 (706)
Q Consensus 239 ~~~~g~--~~~~~spdg~~ 255 (706)
.|. ..+.|.-||+.
T Consensus 763 ---vgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 763 ---VGTRGARILWACDGRI 778 (1012)
T ss_pred ---ccCcceeEEEEecCcE
Confidence 122 26889999986
No 208
>PRK10349 carboxylesterase BioH; Provisional
Probab=98.18 E-value=4.1e-05 Score=76.61 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=47.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
+..|.|+.++.+ |+|.+..... ...+. ++.+.+. ..+++.++||||||++++.++.++|+++++++
T Consensus 37 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~-------~~~l~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~li 103 (256)
T PRK10349 37 SSHFTLHLVDLP---GFGRSRGFGALSLADM-------AEAVLQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALV 103 (256)
T ss_pred hcCCEEEEecCC---CCCCCCCCCCCCHHHH-------HHHHHhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEE
Confidence 356988885554 4554432211 12222 2233332 24789999999999999999999999999998
Q ss_pred eccC
Q 005240 632 ARSG 635 (706)
Q Consensus 632 ~~~~ 635 (706)
..++
T Consensus 104 li~~ 107 (256)
T PRK10349 104 TVAS 107 (256)
T ss_pred EecC
Confidence 8765
No 209
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.18 E-value=3.2e-05 Score=78.58 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=139.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
-|+|+|+..++..-...++-=+..++.+..-+.+|||+.|... .....|-++|+..-..+--........
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG----------GeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG----------GEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec----------cccceeeeeeccCCCcchhhhcCCcch
Confidence 5899999997666666666545566688889999999999763 335677777877654432211121100
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
.--.++.|||.+. .|..- ..+.|-++||.
T Consensus 511 --aCyALa~spDakv-cFscc------------------------------------------------sdGnI~vwDLh 539 (705)
T KOG0639|consen 511 --ACYALAISPDAKV-CFSCC------------------------------------------------SDGNIAVWDLH 539 (705)
T ss_pred --hhhhhhcCCccce-eeeec------------------------------------------------cCCcEEEEEcc
Confidence 1235678999985 44421 11678888994
Q ss_pred C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 166 G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 166 g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
. .++++... ....++.+|+||.+|+-..- .+.+.-||+..+ +++...+...
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~S----------- 593 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFSS----------- 593 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhhh-----------
Confidence 4 45555544 67889999999999974322 247888998643 3444444331
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.+..+.++|.+.+ |++-- . +..+.+... .+.+.-+|.-...-+-++.|++-|++++.+. .+.
T Consensus 594 QIfSLg~cP~~dW-lavGM--e----------ns~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStG--kDn 655 (705)
T KOG0639|consen 594 QIFSLGYCPTGDW-LAVGM--E----------NSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTG--KDN 655 (705)
T ss_pred hheecccCCCccc-eeeec--c----------cCcEEEEec---CCccceeecccccEEEEEEecccCceeeecC--chh
Confidence 2346778899987 54321 1 112444444 3344456766677788999999999888653 334
Q ss_pred ceEEEEEcCC
Q 005240 323 QTRTWLVCPG 332 (706)
Q Consensus 323 ~~~l~~~d~~ 332 (706)
....|+..-.
T Consensus 656 lLnawrtPyG 665 (705)
T KOG0639|consen 656 LLNAWRTPYG 665 (705)
T ss_pred hhhhccCccc
Confidence 4456666543
No 210
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.17 E-value=0.00016 Score=74.01 Aligned_cols=236 Identities=13% Similarity=0.076 Sum_probs=123.4
Q ss_pred ceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-
Q 005240 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 83 (706)
.|.++|+..=+..-+ -++|. ..+...+...+|||.|..|+.++ +..+.-++|-+|-+......+.--
T Consensus 190 ~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvs----------g~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVS----------GSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred eEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEe----------cCcceeEEccCCceeeeeeccchhh
Confidence 455666644222222 23332 23455788999999999998874 445666667666554333221100
Q ss_pred -------cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 84 -------CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 84 -------~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
+--+.+..-.|.|+.+-.+.+.... +.
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D----------------------------------------------gt 292 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD----------------------------------------------GT 292 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCC----------------------------------------------Cc
Confidence 0011234557999988666553211 11
Q ss_pred ceEEEEccCC-Cceec---CC-C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 157 AQLVLGSLDG-TAKDF---GT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~l---t~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
-+||-++-.. +.+.+ .. + -.+..++|+|||+.||-.-.++ .|-+|+..+-.++.......
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-------------SIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG-------------SIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC-------------ceeeeecCCcccccceEeee
Confidence 2333222211 22211 11 1 3567899999999987554443 57778764332222211111
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-ee--ccccccccee
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK--LDLRFRSVSW 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~--~~~~~~~~~w 306 (706)
+.... .++..++||+||+. |+- -+.+ +.|.+||++ .-.++-.. +. ....-.+..|
T Consensus 360 AH~~g-------~~Itsi~FS~dg~~-LlS----Rg~D--------~tLKvWDLr--q~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 360 AHLPG-------QDITSISFSYDGNY-LLS----RGFD--------DTLKVWDLR--QFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred ccCCC-------CceeEEEeccccch-hhh----ccCC--------Cceeeeecc--ccccchhhhcCCCccCCCCcccc
Confidence 11000 12447899999997 541 1111 247888884 11121111 11 2334567789
Q ss_pred cCCCceEEEEeec--cccceEEEEEcCCC
Q 005240 307 CDDSLALVNETWY--KTSQTRTWLVCPGS 333 (706)
Q Consensus 307 spDg~~l~~~~~~--~~~~~~l~~~d~~~ 333 (706)
|||.+.|+..... ......|+.+|..+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccc
Confidence 9999988765432 22444688888666
No 211
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.17 E-value=4.6e-06 Score=75.22 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=88.2
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
..+.|.+.|-- .| .-...++.|.+ . -|++|++|||.+..++ ..........+..+||.|
T Consensus 42 i~r~e~l~Yg~-~g-~q~VDIwg~~~----~---~klfIfIHGGYW~~g~------------rk~clsiv~~a~~~gY~v 100 (270)
T KOG4627|consen 42 IIRVEHLRYGE-GG-RQLVDIWGSTN----Q---AKLFIFIHGGYWQEGD------------RKMCLSIVGPAVRRGYRV 100 (270)
T ss_pred ccchhccccCC-CC-ceEEEEecCCC----C---ccEEEEEecchhhcCc------------hhcccchhhhhhhcCeEE
Confidence 34555565543 33 33445777754 1 4799999999875311 111222344566799999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCCC
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSY 637 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~~ 637 (706)
... ||+..- ......+-+.++...++|+.+... ..++|.+.|||.|++|+..+.+|- ..++.+++..+|++
T Consensus 101 asv------gY~l~~-q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 101 ASV------GYNLCP-QVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred EEe------ccCcCc-ccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 873 333221 122456778889999999988632 456799999999999999998764 34899999999998
Q ss_pred CC
Q 005240 638 NK 639 (706)
Q Consensus 638 d~ 639 (706)
+.
T Consensus 173 ~l 174 (270)
T KOG4627|consen 173 DL 174 (270)
T ss_pred hH
Confidence 74
No 212
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.16 E-value=4.1e-05 Score=76.04 Aligned_cols=145 Identities=10% Similarity=0.143 Sum_probs=86.5
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..++.+.||++|.+++-. ... .-|.+|..+=..++.+..... ..++.++|||...
T Consensus 139 s~Vr~m~ws~~g~wmiSg-D~g------------G~iKyWqpnmnnVk~~~ahh~------------eaIRdlafSpnDs 193 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISG-DKG------------GMIKYWQPNMNNVKIIQAHHA------------EAIRDLAFSPNDS 193 (464)
T ss_pred ccceeEEEccCCCEEEEc-CCC------------ceEEecccchhhhHHhhHhhh------------hhhheeccCCCCc
Confidence 578899999999998633 222 367778776443333222211 1266889999665
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. |+... +.+.|.+||.. ...+.++|..+...+..+.|.|.-..|+..+ .+ . -+-.+|..++
T Consensus 194 k---F~t~S----------dDg~ikiWdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgs-kD-n--lVKlWDprSg 254 (464)
T KOG0284|consen 194 K---FLTCS----------DDGTIKIWDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGS-KD-N--LVKLWDPRSG 254 (464)
T ss_pred e---eEEec----------CCCeEEEEecc--CCchhheeccCCCCcceeccCCccceeEEcc-CC-c--eeEeecCCCc
Confidence 4 34322 22357777762 3345566777888999999999966566543 22 2 4667788875
Q ss_pred CCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
. +...|.... . .+..+.|+++|.+|+...
T Consensus 255 ~-cl~tlh~HK-n------tVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 255 S-CLATLHGHK-N------TVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred c-hhhhhhhcc-c------eEEEEEEcCCCCeeEEcc
Confidence 2 222221110 1 122367899998876654
No 213
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.15 E-value=0.00064 Score=65.18 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=131.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+++++.. .=.....+++... -+..+.|++||+.|+-..+ ...+..+|+++|+..+--.....
T Consensus 70 ~I~LWnv~g--dceN~~~lkgHsg--AVM~l~~~~d~s~i~S~gt----------Dk~v~~wD~~tG~~~rk~k~h~~-- 133 (338)
T KOG0265|consen 70 AIVLWNVYG--DCENFWVLKGHSG--AVMELHGMRDGSHILSCGT----------DKTVRGWDAETGKRIRKHKGHTS-- 133 (338)
T ss_pred eEEEEeccc--cccceeeeccccc--eeEeeeeccCCCEEEEecC----------CceEEEEecccceeeehhccccc--
Confidence 466777654 2233444443333 3788999999999966542 36889999999875543322222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
-+..+.=+.=|-.|+.... ..+++-++|..
T Consensus 134 --~vNs~~p~rrg~~lv~Sgs------------------------------------------------dD~t~kl~D~R 163 (338)
T KOG0265|consen 134 --FVNSLDPSRRGPQLVCSGS------------------------------------------------DDGTLKLWDIR 163 (338)
T ss_pred --eeeecCccccCCeEEEecC------------------------------------------------CCceEEEEeec
Confidence 1333332233444554421 12577778883
Q ss_pred -CCceecC-CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC
Q 005240 166 -GTAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (706)
Q Consensus 166 -g~~~~lt-~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g 243 (706)
.++.++. ......++.|.-++..+.-..-+ ++|-+||+-.....-+..+.. +-
T Consensus 164 ~k~~~~t~~~kyqltAv~f~d~s~qv~sggId-------------n~ikvWd~r~~d~~~~lsGh~------------Dt 218 (338)
T KOG0265|consen 164 KKEAIKTFENKYQLTAVGFKDTSDQVISGGID-------------NDIKVWDLRKNDGLYTLSGHA------------DT 218 (338)
T ss_pred ccchhhccccceeEEEEEecccccceeecccc-------------CceeeeccccCcceEEeeccc------------Cc
Confidence 3343333 33678899999999888643322 478999996554444443321 11
Q ss_pred CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeec-----ccccccceecCCCceEEEEe
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-----DLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~-----~~~~~~~~wspDg~~l~~~~ 317 (706)
+..+.-||+|.. |. . ......+.+||+.|+..+++ ..+... ....-.-+|||++..+.+.+
T Consensus 219 It~lsls~~gs~-ll--s----------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 219 ITGLSLSRYGSF-LL--S----------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS 285 (338)
T ss_pred eeeEEeccCCCc-cc--c----------ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc
Confidence 346788899886 32 1 11233588899988777766 334322 22334568999999888766
Q ss_pred eccccceEEEEEcCCC
Q 005240 318 WYKTSQTRTWLVCPGS 333 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~ 333 (706)
.+ ..+|++|..+
T Consensus 286 ~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 286 AD----RFVYVWDTTS 297 (338)
T ss_pred cc----ceEEEeeccc
Confidence 33 3588888776
No 214
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.00042 Score=65.44 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=94.0
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..++.++|||.|++|+..+.+. .+.+|.-.+++..-+....+.+ +.+..++||++|+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-------------t~~Iw~k~~~efecv~~lEGHE----------nEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-------------TVVIWKKEDGEFECVATLEGHE----------NEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-------------eEEEeecCCCceeEEeeeeccc----------cceeEEEEcCCCC
Confidence 4788999999999998777653 5666666666666666665554 3355789999999
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
. |+.++ ++ . -+|+|.++ ++++.. .|..+...+-.+.|.|---.|+ ...++ ...++|+-+.
T Consensus 119 ~-LATCS-RD---K--------SVWiWe~d--eddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~SYD-nTIk~~~~~~ 181 (312)
T KOG0645|consen 119 Y-LATCS-RD---K--------SVWIWEID--EDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCSYD-NTIKVYRDED 181 (312)
T ss_pred E-EEEee-CC---C--------eEEEEEec--CCCcEEEEeeeccccccccEEEEcCCcceeE-EeccC-CeEEEEeecC
Confidence 8 77553 11 1 37788874 445544 3556677888899999644444 43454 4567887765
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+. .-+..+..+..-. ....+.|.+.|.+++...
T Consensus 182 dd-dW~c~~tl~g~~~------TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 DD-DWECVQTLDGHEN------TVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred CC-CeeEEEEecCccc------eEEEEEecCCCceEEEec
Confidence 32 1222222332211 223456788887776654
No 215
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.13 E-value=0.0024 Score=62.98 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=109.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-eeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+..+|+-+++|.. .+...-|+++..+|+ +-.+|.++.. +....||-||.+|+..-
T Consensus 66 svFavsl~P~~~l~aTG----------GgDD~AflW~~~~ge~~~eltgHKDS-----Vt~~~FshdgtlLATGd----- 125 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG----------GGDDLAFLWDISTGEFAGELTGHKDS-----VTCCSFSHDGTLLATGD----- 125 (399)
T ss_pred ceEEEEeCCCCceEEec----------CCCceEEEEEccCCcceeEecCCCCc-----eEEEEEccCceEEEecC-----
Confidence 57788899976666553 333455777777765 4445544443 78899999999888541
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
..+.|.++.. +| ....+... ..+..+.|.|-+.
T Consensus 126 --------------------------------------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 126 --------------------------------------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred --------------------------------------------CCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 1145666666 44 44445433 7889999999988
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
.|++.+... .+|.|.+..+...++..+... |. .-| .|.|||+. |+... .
T Consensus 162 illAG~~DG-------------svWmw~ip~~~~~kv~~Gh~~---~c-----t~G----~f~pdGKr-~~tgy-~---- 210 (399)
T KOG0296|consen 162 ILLAGSTDG-------------SVWMWQIPSQALCKVMSGHNS---PC-----TCG----EFIPDGKR-ILTGY-D---- 210 (399)
T ss_pred EEEeecCCC-------------cEEEEECCCcceeeEecCCCC---Cc-----ccc----cccCCCce-EEEEe-c----
Confidence 887766553 799999997655566555322 10 012 68899997 54331 1
Q ss_pred CccccCccceeeeecCCCCCCCCce-EEeecc-cccccceecCCCceEEE
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLD-LRFRSVSWCDDSLALVN 315 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~-~~~~~~~wspDg~~l~~ 315 (706)
.+.|.+|+. .++++- .++... ....-+..+.++..++-
T Consensus 211 -------dgti~~Wn~---ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 211 -------DGTIIVWNP---KTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred -------CceEEEEec---CCCceeEEecccccCcCCccccccccceeEe
Confidence 235778887 666543 333222 22233345555555443
No 216
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.13 E-value=3.6e-05 Score=77.77 Aligned_cols=90 Identities=27% Similarity=0.235 Sum_probs=59.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHh--
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAH-- 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~-- 622 (706)
.....|+++||+|+.++|. |.|..+.........+-|.+.|++.+.. .+.-...+++++|+|.||+-+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY~---Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYE---GLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCCC---CCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 3456788999999998886 4444544332222334444454444433 233234799999999999999988744
Q ss_pred --CCCc---eeEEEeccCCCC
Q 005240 623 --APHL---FCCGIARSGSYN 638 (706)
Q Consensus 623 --~p~~---~~a~v~~~~~~d 638 (706)
.|+. +.++++.++..|
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~d 114 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPAD 114 (290)
T ss_pred HhCcccccceeEEeccCCccC
Confidence 3654 788888887755
No 217
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.13 E-value=0.00018 Score=73.26 Aligned_cols=236 Identities=15% Similarity=0.191 Sum_probs=143.0
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCccccccccceEEecC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
-.++++..|..|.-+-.+++|-.-+++ |+ .|+..|-++|+.. +...++...+--.-...+++...+||
T Consensus 408 rharq~~tL~HGEvVcAvtIS~~trhV-yT----------gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 408 RHARQINTLAHGEVVCAVTISNPTRHV-YT----------GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred chHHhhhhhccCcEEEEEEecCCccee-Ee----------cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC
Confidence 356667667777767788999998888 43 3445555566543 33344433221000112678899999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cce---ecCC
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK---DFGT 173 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~---~lt~ 173 (706)
|+.|+.... ...|-+|||.. .++ .|+.
T Consensus 477 grtLivGGe-------------------------------------------------astlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 477 GRTLIVGGE-------------------------------------------------ASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred CceEEeccc-------------------------------------------------cceeeeeeccCCCcchhhhcCC
Confidence 999887531 14667778844 222 2332
Q ss_pred C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
. ..-..++.|||.| |.|..... ..|.+||+-... +|++-... +|...|..|+
T Consensus 508 sapaCyALa~spDak-vcFsccsd------------GnI~vwDLhnq~~VrqfqGht-------------DGascIdis~ 561 (705)
T KOG0639|consen 508 SAPACYALAISPDAK-VCFSCCSD------------GNIAVWDLHNQTLVRQFQGHT-------------DGASCIDISK 561 (705)
T ss_pred cchhhhhhhcCCccc-eeeeeccC------------CcEEEEEcccceeeecccCCC-------------CCceeEEecC
Confidence 2 2234678999986 45666543 379999997554 44443322 5566889999
Q ss_pred CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
||.. |+ . +|-. +.|..||+ . +.+++. ....++.++..+|.+.+|++.. .+..++++
T Consensus 562 dGtk-lW-T----GGlD-------ntvRcWDl---r--egrqlqqhdF~SQIfSLg~cP~~dWlavGM----ens~vevl 619 (705)
T KOG0639|consen 562 DGTK-LW-T----GGLD-------NTVRCWDL---R--EGRQLQQHDFSSQIFSLGYCPTGDWLAVGM----ENSNVEVL 619 (705)
T ss_pred CCce-ee-c----CCCc-------cceeehhh---h--hhhhhhhhhhhhhheecccCCCccceeeec----ccCcEEEE
Confidence 9987 54 2 2221 24778888 2 333333 3467888999999999999864 34457777
Q ss_pred cCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 330 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+. +.-+|.... ++ +.++.|++-|+|.+.+-
T Consensus 620 h~skp--~kyqlhlhe--Sc-----VLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 620 HTSKP--EKYQLHLHE--SC-----VLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ecCCc--cceeecccc--cE-----EEEEEecccCceeeecC
Confidence 76664 234442211 11 11256788888876653
No 218
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.12 E-value=1.7e-05 Score=81.17 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch--hhHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVE 591 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~ 591 (706)
|.||++||.+.. ...| ...+..|++.+ .|++++.+ |+|.+.... .......+|+...++
T Consensus 28 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~~-~via~D~~---G~G~S~~~~~~~~~~~~a~dl~~ll~ 88 (295)
T PRK03592 28 DPIVFLHGNPTS-----------SYLW----RNIIPHLAGLG-RCLAPDLI---GMGASDKPDIDYTFADHARYLDAWFD 88 (295)
T ss_pred CEEEEECCCCCC-----------HHHH----HHHHHHHhhCC-EEEEEcCC---CCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 468889996421 0111 13455666676 88875555 566554321 234555666666655
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
.+ +.+++.+.|||+||.+++.++.++|+++++++..++
T Consensus 89 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 89 AL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred Hh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 54 236899999999999999999999999999998886
No 219
>PRK06489 hypothetical protein; Provisional
Probab=98.12 E-value=2.9e-05 Score=81.91 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=49.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCch---------hhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHHh
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~~ 622 (706)
+.+|.|++++.+ |+|.+.... .......+|+.+. +.+. .+-+++ .|+|+||||++++.++.+
T Consensus 103 ~~~~~Via~Dl~---GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~---l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIILPDGI---GHGKSSKPSDGLRAAFPRYDYDDMVEAQYRL---VTEG--LGVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEEeCCC---CCCCCCCCCcCCCCCCCcccHHHHHHHHHHH---HHHh--cCCCceeEEEEECHHHHHHHHHHHh
Confidence 578999996665 455443211 1123333333332 3222 123566 489999999999999999
Q ss_pred CCCceeEEEeccC
Q 005240 623 APHLFCCGIARSG 635 (706)
Q Consensus 623 ~p~~~~a~v~~~~ 635 (706)
+|++++++|..++
T Consensus 175 ~P~~V~~LVLi~s 187 (360)
T PRK06489 175 YPDFMDALMPMAS 187 (360)
T ss_pred Cchhhheeeeecc
Confidence 9999999998765
No 220
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.10 E-value=2.3e-05 Score=77.12 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=78.3
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.+...||..+...+..++. + .+ .|+||.+||= .++-. +.+...++..+.++||.|++.+-||
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-~-~~---~P~vVl~HGL-----------~G~s~--s~y~r~L~~~~~~rg~~~Vv~~~Rg 114 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-A-AK---KPLVVLFHGL-----------EGSSN--SPYARGLMRALSRRGWLVVVFHFRG 114 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-c-cC---CceEEEEecc-----------CCCCc--CHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4444566666665665443 1 12 5999999982 22211 1122234555678999999877776
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHH-HHHHHHHHhCCC-ceeEEEeccC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPH-LFCCGIARSG 635 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG-~~a~~~~~~~p~-~~~a~v~~~~ 635 (706)
-.|.-.... .-+-.....|+..++++++++.. +.++.++|.|+|| +||.+++-...+ ...|+++.+.
T Consensus 115 cs~~~n~~p-~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~ 183 (345)
T COG0429 115 CSGEANTSP-RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSA 183 (345)
T ss_pred ccCCcccCc-ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeC
Confidence 554322111 11222345899999999998754 5799999999999 666666644322 3455555553
No 221
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.0032 Score=60.92 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=121.1
Q ss_pred ceEEEEccCC--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~ 232 (706)
+.+..+|+.. -.+.++.. ..+.+++||+||+.|+-.+.+ ..+.+||+- |...+++-..
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D-------------~si~lwDl~~gs~l~rirf~----- 106 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD-------------WSIKLWDLLKGSPLKRIRFD----- 106 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC-------------ceeEEEeccCCCceeEEEcc-----
Confidence 6788888844 34445555 678899999999999755543 478899997 4444443221
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-cccc-ccc---eec
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRF-RSV---SWC 307 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~-~~~---~ws 307 (706)
.| ++...|.|-.+. .+.+...+.. -+++++ .....+.|... ++.. ..+ .|.
T Consensus 107 sp---------v~~~q~hp~k~n-~~va~~~~~s-----------p~vi~~---s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 107 SP---------VWGAQWHPRKRN-KCVATIMEES-----------PVVIDF---SDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred Cc---------cceeeeccccCC-eEEEEEecCC-----------cEEEEe---cCCceeeccCCCcccccccccccccc
Confidence 12 345678886654 3322211111 123333 22333334322 2211 122 377
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
+-|++|+... ..+.|-++|..+- +.+.-+. +..+ ...-++.++..|+.+++...+
T Consensus 163 r~g~yIitGt----sKGkllv~~a~t~--e~vas~r--its~---~~IK~I~~s~~g~~liiNtsD-------------- 217 (405)
T KOG1273|consen 163 RRGKYIITGT----SKGKLLVYDAETL--ECVASFR--ITSV---QAIKQIIVSRKGRFLIINTSD-------------- 217 (405)
T ss_pred CCCCEEEEec----CcceEEEEecchh--eeeeeee--echh---eeeeEEEEeccCcEEEEecCC--------------
Confidence 8899988754 3446777887773 2111111 0000 011224456777777665421
Q ss_pred CCCCCCCCceeeeecC-------CCceeeeecccchhhhhhhhhhccC-CC-ceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 388 FTPEGNIPFLDLFDIN-------TGSKERIWESNREKYFETAVALVFG-QG-EEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~-------~g~~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
| .+..+++. .|+.+. ...+..+... .+ ...||.||.+++... .....+|.|.
T Consensus 218 ------R-vIR~ye~~di~~~~r~~e~e~---------~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s---~~aHaLYIWE 278 (405)
T KOG1273|consen 218 ------R-VIRTYEISDIDDEGRDGEVEP---------EHKLQDVVNKLQWKKCCFSGDGEYVCAGS---ARAHALYIWE 278 (405)
T ss_pred ------c-eEEEEehhhhcccCccCCcCh---------hHHHHHHHhhhhhhheeecCCccEEEecc---ccceeEEEEe
Confidence 1 12223321 111111 1122222221 12 467999997666432 4556799999
Q ss_pred CCCCceeEeecCCC
Q 005240 459 WPLKKSSQITNFPH 472 (706)
Q Consensus 459 ~~~~~~~~lt~~~~ 472 (706)
...|...++.+-++
T Consensus 279 ~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 279 KSIGSLVKILHGTK 292 (405)
T ss_pred cCCcceeeeecCCc
Confidence 88898888877654
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=9.8e-05 Score=72.34 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=58.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEE-EEEcCCCceeecccC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVW-IADAETGEAKPLFES 80 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~-~~d~~~g~~~~lt~~ 80 (706)
..++|-|.+++. |...+|. +.+ ...+..+|||||.+|.-+.- +....|| .-...+.+...+.
T Consensus 216 gsssi~iWdpdt----g~~~pL~--~~glgg~slLkwSPdgd~lfaAt~--------davfrlw~e~q~wt~erw~lg-- 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDT----GQKIPLI--PKGLGGFSLLKWSPDGDVLFAATC--------DAVFRLWQENQSWTKERWILG-- 279 (445)
T ss_pred CcceEEEEcCCC----CCccccc--ccCCCceeeEEEcCCCCEEEEecc--------cceeeeehhcccceecceecc--
Confidence 457889999988 8888876 333 35788999999999954432 5667888 4444455544443
Q ss_pred CCccccccccceEEecCCcEEEEEec
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+. +..-.|||+|+.|.|...
T Consensus 280 sgr-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 280 SGR-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred CCc-----eeeeeecCCCCEEEEEEc
Confidence 222 677899999999998753
No 223
>PLN02578 hydrolase
Probab=98.07 E-value=2.3e-05 Score=82.41 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=53.3
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+.+|.|+..+.+ |+|.+.... .......+|+.+.++.+. .+++.++|||+||++++.++.++|++++++
T Consensus 110 ~~~~~v~~~D~~---G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 110 AKKYKVYALDLL---GFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred hcCCEEEEECCC---CCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 467999997765 455443321 122334455655555442 367999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
+..++.
T Consensus 181 vLv~~~ 186 (354)
T PLN02578 181 ALLNSA 186 (354)
T ss_pred EEECCC
Confidence 987653
No 224
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.06 E-value=2.8e-05 Score=73.94 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=77.6
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
+.|.+.+.+.+. ++..|+..|.. . +-|++++.|||+++. -+|. .+++.+.. .-+.++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~---t---~gpil~l~HG~G~S~-----------LSfA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA---T---EGPILLLLHGGGSSA-----------LSFA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC---C---CccEEEEeecCcccc-----------hhHH----HHHHHHHhhcceeEE
Confidence 667777777665 89999999963 1 248999999986431 1221 23455553 455666
Q ss_pred EcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+ .+-+|+|+.--. +-..+...+|+.+.++++-.. ++.+|.+.||||||.+|.+.+...
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 6 344466655322 123556789999988888644 356799999999999998888665
No 225
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=98.05 E-value=2.2e-05 Score=82.15 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=54.4
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHHHHHHHHhCCCceeE
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
|.+.+|.|+.++.+| +|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|++++.
T Consensus 95 L~~~~~~Vi~~Dl~G---~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDFIG---ADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeCCC---CCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 434679999877664 4444322222345566666655544 2234 57999999999999999999999999
Q ss_pred EEeccCC
Q 005240 630 GIARSGS 636 (706)
Q Consensus 630 ~v~~~~~ 636 (706)
+|..++.
T Consensus 166 LvLi~s~ 172 (343)
T PRK08775 166 LVVVSGA 172 (343)
T ss_pred EEEECcc
Confidence 9988764
No 226
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.04 E-value=0.0018 Score=64.14 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=126.6
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
+...+..+| ++.-+||.+. -..-++++|..+|+..+....+.. ...+..-.|||||++||.+-++- .
T Consensus 6 RgH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEnd~-~ 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTENDY-E 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeEEcCCCC--CEEecCEEEcCCCCEEEEecccc-C
Confidence 367889999 6666666652 236788899998887654322221 11234668999999888663211 0
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecC---CC-ceEeeeeeCCCC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG---TP-AVYTAVEPSPDQ 186 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt---~~-~~~~~~~~SpDG 186 (706)
. .++.|-++|+....+++. .. -....+.|.|||
T Consensus 74 ~-------------------------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 74 T-------------------------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred C-------------------------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 0 346788888864344443 22 356788899999
Q ss_pred cEEEEEeecc---Ccc--cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 187 KYVLITSMHR---PYS--YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 187 ~~i~~~~~~~---~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
+.|++....= ++. .......+...|.+.|..++++..-...+... ...+.+.+++.+||. +++.
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~--------~~lSiRHLa~~~~G~--V~~a- 179 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL--------HQLSIRHLAVDGDGT--VAFA- 179 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc--------cccceeeEEecCCCc--EEEE-
Confidence 9987644321 111 11111223355666665555432211111000 013467899999986 3332
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEe-------ecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..-.++... ....|.+... ++.++.+. .....+.++++++||..++.++-. ...+.++|.+++
T Consensus 180 ~Q~qg~~~~---~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg 249 (305)
T PF07433_consen 180 MQYQGDPGD---APPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATG 249 (305)
T ss_pred EecCCCCCc---cCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCC
Confidence 233333221 1123555443 23333332 225678899999999988887633 335666687774
No 227
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.0038 Score=63.13 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=78.2
Q ss_pred ceEEEEcc-CCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p 234 (706)
..|+.++. +|+.+.+..+..+.+...--++..|+... . .+++++.+.+.. +.++... .+...
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~-~~~~~ 110 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPE-DGLPL 110 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEecccc-CCCCc
Confidence 68889988 56666665553333333333333443332 2 356666664444 3433322 21111
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
. ...+....|||+ +||................+.||+++. .++..+.+...-..-+.++||||++.++
T Consensus 111 ~-------r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 111 N-------RPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred C-------CCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 1 112557788887 666543310000001112346999886 4444444444356678899999999888
Q ss_pred EEeeccccceEEEEEcCC
Q 005240 315 NETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~ 332 (706)
++.. ...+||+++.+
T Consensus 179 ~aDT---~~~~i~r~~~d 193 (307)
T COG3386 179 VADT---PANRIHRYDLD 193 (307)
T ss_pred EEeC---CCCeEEEEecC
Confidence 8642 34578888776
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=0.0047 Score=73.67 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=68.8
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC---CcccCccCCCCcceeeecCC
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI---PVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~---p~~~~~~~~g~~~~~~spdg 253 (706)
...++++|++..|+++... ..+|++|+..++..+.+.. .+.... .......-..+..++++|||
T Consensus 685 P~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G-~G~~~~~~g~~~~~~~~~~P~GIavspdG 751 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSG-DGYERNLNGSSGTSTSFAQPSGISLSPDL 751 (1057)
T ss_pred CeEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEec-CCccccCCCCccccccccCccEEEEeCCC
Confidence 3578999987788766543 2479999988776554432 111000 00000001235578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc----------------------cccccceecCCCc
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------------------LRFRSVSWCDDSL 311 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------------------~~~~~~~wspDg~ 311 (706)
+. ||+. +.. .+.|.++|. +++..+.+.... .....+.+++||.
T Consensus 752 ~~-LYVA-Ds~----------n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~ 816 (1057)
T PLN02919 752 KE-LYIA-DSE----------SSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ 816 (1057)
T ss_pred CE-EEEE-ECC----------CCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc
Confidence 87 6644 221 124667776 443332221100 1123567888887
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|+++. . .+.+|.++|++++
T Consensus 817 -LYVAD-s--~N~rIrviD~~tg 835 (1057)
T PLN02919 817 -IYVAD-S--YNHKIKKLDPATK 835 (1057)
T ss_pred -EEEEE-C--CCCEEEEEECCCC
Confidence 33332 2 4567899998874
No 229
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.01 E-value=4.7e-05 Score=75.38 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~ 592 (706)
|.||++||.+..+ ..| ......| .+|.|+.++.+ |+|.+... ........+|+.+.++.
T Consensus 3 p~vvllHG~~~~~-----------~~w----~~~~~~l--~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~l~~~l~~ 62 (242)
T PRK11126 3 PWLVFLHGLLGSG-----------QDW----QPVGEAL--PDYPRLYIDLP---GHGGSAAISVDGFADVSRLLSQTLQS 62 (242)
T ss_pred CEEEEECCCCCCh-----------HHH----HHHHHHc--CCCCEEEecCC---CCCCCCCccccCHHHHHHHHHHHHHH
Confidence 5689999964210 111 1223334 47999986655 55554332 12334445555554443
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCC
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGS 636 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~ 636 (706)
+ +.+++.++||||||.+++.++.++|+ ++++++..++.
T Consensus 63 ~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 63 Y------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred c------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 2 34789999999999999999999865 49988877643
No 230
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.01 E-value=0.0066 Score=60.91 Aligned_cols=92 Identities=20% Similarity=0.113 Sum_probs=46.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--c
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--I 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~ 83 (706)
.++|.|.+. ++- .+.-......++..||||+.++.+.+.-.....+....-|-++|.++-+++.-...+. +
T Consensus 18 rv~viD~d~----~k~---lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADS----GKL---LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTT----TEE---EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred eEEEEECCC----CcE---EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 466766655 442 2222222466788999999998665521112222223446678887754322111111 1
Q ss_pred cc-cccccceEEecCCcEEEEE
Q 005240 84 CL-NAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 84 ~~-~~~~~~~~wSpDg~~l~~~ 104 (706)
.. -.....++.|+||+++++.
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEE
T ss_pred heecccccceEEccCCcEEEEE
Confidence 10 0113477999999987764
No 231
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.00 E-value=0.00046 Score=66.78 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.0
Q ss_pred ceEEEEcc-CCCceecCCC-------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeE---E
Q 005240 157 AQLVLGSL-DGTAKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVR---E 223 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~-------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~---~ 223 (706)
.-|.++|. +|+.+.-... ....++.|||||.+|+.... +.|.++|+. |..-. .
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--------------rcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--------------RCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--------------ceEEEeeccCCCCCCcchhh
Confidence 34777787 7755432111 24468899999999974432 367788774 22111 1
Q ss_pred cccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccccc
Q 005240 224 LCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRF 301 (706)
Q Consensus 224 l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~ 301 (706)
++...... .| ...+++||-....+++-... .+--||..+ ++.+ ..|....+.+
T Consensus 199 ~~~~k~gq----------~giisc~a~sP~~~~~~a~gsY~----------q~~giy~~~-----~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 199 VTKGKFGQ----------KGIISCFAFSPMDSKTLAVGSYG----------QRVGIYNDD-----GRRPLQLLGGHGGGV 253 (406)
T ss_pred hhcccccc----------cceeeeeeccCCCCcceeeeccc----------ceeeeEecC-----CCCceeeecccCCCe
Confidence 12111000 12 22578888776535543211 111355543 2334 3445668889
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+.|.+||..|+..+ ++. ..|..+|+..
T Consensus 254 ThL~~~edGn~lfsGa-Rk~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGA-RKD--DKILCWDIRY 282 (406)
T ss_pred eeEEeccCcCeecccc-cCC--CeEEEEeehh
Confidence 9999999999988765 332 2466666654
No 232
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.00 E-value=0.00016 Score=73.53 Aligned_cols=229 Identities=12% Similarity=0.098 Sum_probs=127.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.++.+.|.|-.-+|..+... + ..|+++++-. +...+...+. +..+++..||.+|..+...+-+
T Consensus 216 gvsai~~fp~~~hLlLS~gm-------D--~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM-------D--GLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecCC-------C--ceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---
Confidence 48899999954455444332 3 4555556543 4433332222 2238899999999987765421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..|-++|+ +| ...++..+..+..+.+-||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 46777788 77 4455655556678899999988
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
+++..... ..|..||+..+++.+-.+.... .+..+.|-++|++ |++..+.+
T Consensus 314 ~fl~G~sd------------~ki~~wDiRs~kvvqeYd~hLg------------~i~~i~F~~~g~r---FissSDdk-- 364 (503)
T KOG0282|consen 314 IFLVGGSD------------KKIRQWDIRSGKVVQEYDRHLG------------AILDITFVDEGRR---FISSSDDK-- 364 (503)
T ss_pred EEEEecCC------------CcEEEEeccchHHHHHHHhhhh------------heeeeEEccCCce---EeeeccCc--
Confidence 87765542 5899999987775543333221 1336788888886 44333322
Q ss_pred ccccCccceeeeecCCCCCCCCceEE-e-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC-CCceeeecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEIL-H-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD-VAPRVLFDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l-~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~-~~~~~l~~~~ 345 (706)
.+.+|+- ...-+-.+ . ........+.-+|+++.++..+. .+.|++..+.-.- ...+..+++.
T Consensus 365 --------s~riWe~---~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 365 --------SVRIWEN---RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred --------cEEEEEc---CCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccccCHhhhhcce
Confidence 1334433 11111111 1 11223334567899998876542 2234444322210 0111112322
Q ss_pred ccccccCCC-CCceEeccCCCEEEEee
Q 005240 346 FENVYSDPG-SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 346 ~~~~~~~~~-~~~~~~s~dg~~l~~~~ 371 (706)
.. +| ...+.+||||++|....
T Consensus 430 ~v-----aGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 430 SV-----AGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ec-----cCceeeEEEcCCCCeEEeec
Confidence 11 12 12466899999987765
No 233
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.00 E-value=4.1e-05 Score=77.89 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=52.3
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
...+|.|+.++.+ |+|.+...... ...+++....+..+.+. .+..++.++||||||.+++.++.++|++++++|
T Consensus 57 l~~~~~vi~~D~~---G~G~S~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVAPDYL---GFGLSERPSGF-GYQIDEHARVIGEFVDH--LGLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEEECCC---CCCCCCCCCcc-ccCHHHHHHHHHHHHHH--hCCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 3467999886665 55554322110 11133444444444443 234689999999999999999999999999998
Q ss_pred eccCC
Q 005240 632 ARSGS 636 (706)
Q Consensus 632 ~~~~~ 636 (706)
..++.
T Consensus 131 l~~~~ 135 (286)
T PRK03204 131 LGNTW 135 (286)
T ss_pred EECcc
Confidence 77653
No 234
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.99 E-value=0.0011 Score=63.68 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=115.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----CceeecccCCCc----cc------cccccceEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESPDI----CL------NAVFGSFVWVNN 97 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~----~~------~~~~~~~~wSpD 97 (706)
.....+|||||..+|-.+. ...|-++|++- .+++++-.+... .+ -..+..+.|.|-
T Consensus 114 ~cR~aafs~DG~lvATGsa----------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSA----------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceeeeeeCCCCcEEEccCC----------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4778899999999987542 34566666551 122222111100 00 012567788888
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C----ceecC
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T----AKDFG 172 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~----~~~lt 172 (706)
...|+..+.+ ..|.++|... . .+.++
T Consensus 184 e~ILiS~srD-------------------------------------------------~tvKlFDfsK~saKrA~K~~q 214 (430)
T KOG0640|consen 184 ETILISGSRD-------------------------------------------------NTVKLFDFSKTSAKRAFKVFQ 214 (430)
T ss_pred hheEEeccCC-------------------------------------------------CeEEEEecccHHHHHHHHHhh
Confidence 8877755421 4566677733 2 22233
Q ss_pred CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 173 ~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
+...+.++.|.|.|.+|+..... ..+.+||+++-+--.-....... ..++..+.+|+.
T Consensus 215 d~~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~QcfvsanPd~qh---------t~ai~~V~Ys~t 272 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQCFVSANPDDQH---------TGAITQVRYSST 272 (430)
T ss_pred ccceeeeEeecCCCceEEEecCC-------------CceeEEeccceeEeeecCccccc---------ccceeEEEecCC
Confidence 33788999999999999876543 36788888865432211111100 022447789999
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
|+ ||.....++ .|.+||- ..+..++.+.. ....+.+..|+.||++|+... .+....||.+.
T Consensus 273 ~~--lYvTaSkDG-----------~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLWEi~ 335 (430)
T KOG0640|consen 273 GS--LYVTASKDG-----------AIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLWEIS 335 (430)
T ss_pred cc--EEEEeccCC-----------cEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccceeeeeeec
Confidence 98 776543332 2556653 13334444432 245678899999999888643 33445566654
No 235
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=97.99 E-value=4.8e-05 Score=78.95 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=101.0
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
..+.|...+.+.||.-+..-.+ |..- ++.|+|++.||=-. ....|-... .....+-.|+.+||.|
T Consensus 45 gy~~E~h~V~T~DgYiL~lhRI-p~~~-----~~rp~Vll~HGLl~--------sS~~Wv~n~-p~~sLaf~LadaGYDV 109 (403)
T KOG2624|consen 45 GYPVEEHEVTTEDGYILTLHRI-PRGK-----KKRPVVLLQHGLLA--------SSSSWVLNG-PEQSLAFLLADAGYDV 109 (403)
T ss_pred CCceEEEEEEccCCeEEEEeee-cCCC-----CCCCcEEEeecccc--------ccccceecC-ccccHHHHHHHcCCce
Confidence 4688999999999975544444 4431 34799999999422 122232221 2234566788999999
Q ss_pred EEcCCCCcCCCCCC-----------CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--
Q 005240 559 LAGPSIPIIGEGDK-----------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-- 625 (706)
Q Consensus 559 ~~~~~~~~~g~g~~-----------~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-- 625 (706)
-.+|.||. .|++. |....|-+-...|+-+.|+|+.+.- ..+++..+|||.|+......+...|+
T Consensus 110 WLgN~RGn-~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~ 186 (403)
T KOG2624|consen 110 WLGNNRGN-TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYN 186 (403)
T ss_pred eeecCcCc-ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhh
Confidence 99898874 33332 3333455556889999999999863 45899999999999999888888766
Q ss_pred -ceeEEEeccCCC
Q 005240 626 -LFCCGIARSGSY 637 (706)
Q Consensus 626 -~~~a~v~~~~~~ 637 (706)
+++..++.+|+.
T Consensus 187 ~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 187 KKIKSFIALAPAA 199 (403)
T ss_pred hhhheeeeecchh
Confidence 688999999875
No 236
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.97 E-value=0.002 Score=69.25 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=114.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+....+|.|...|+.. .+..|-+++.++.+. +.++.. . +-...+-|.+++++...+
T Consensus 375 dVRsl~vS~d~~~~~Sg-----------a~~SikiWn~~t~kciRTi~~~-y------~l~~~Fvpgd~~Iv~G~k---- 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASG-----------AGESIKIWNRDTLKCIRTITCG-Y------ILASKFVPGDRYIVLGTK---- 432 (888)
T ss_pred heeEEEeecCceeeeec-----------CCCcEEEEEccCcceeEEeccc-c------EEEEEecCCCceEEEecc----
Confidence 67888999888777653 335566667776654 444322 1 334567788888776532
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.|-++|+ .. -...+... +.+..++.+||++
T Consensus 433 ---------------------------------------------~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 433 ---------------------------------------------NGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred ---------------------------------------------CCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 256666777 33 33333334 6788999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecC------CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD------GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
..+..+.+. .+..|+.. |.+.+.| ........ .+ .+.+-.+.+||||+. |+..
T Consensus 468 g~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~l-sl~~~rtL--el---~ddvL~v~~Spdgk~-LaVs- 526 (888)
T KOG0306|consen 468 GFVTGSADK-------------TVKFWDFKLVVSVPGTQKKVL-SLKHTRTL--EL---EDDVLCVSVSPDGKL-LAVS- 526 (888)
T ss_pred ceEEecCCc-------------EEEEEeEEEEeccCcccceee-eeccceEE--ec---cccEEEEEEcCCCcE-EEEE-
Confidence 987655442 34444432 2222211 11000000 00 022346799999996 5532
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
-.+ ++-.+|.+|. -+ .-.|..+.-.+..+..|||++.|+..+.+ .+.++|-+|-..
T Consensus 527 LLd---------nTVkVyflDt-----lKFflsLYGHkLPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD 583 (888)
T KOG0306|consen 527 LLD---------NTVKVYFLDT-----LKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD 583 (888)
T ss_pred ecc---------CeEEEEEecc-----eeeeeeecccccceeEEeccCCcCeEEeccCC--CceEEeccccch
Confidence 122 2224666553 12 12355667788899999999998876533 456777777543
No 237
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=97.95 E-value=0.00014 Score=74.38 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=89.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCC-CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~-~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+..-++.+||-.+-..++.+++-.. .+.+..|+||++||-.. + +...+-..+.....+.||.++
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg-----------~--S~~~YVr~lv~~a~~~G~r~V 158 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTG-----------G--SHESYVRHLVHEAQRKGYRVV 158 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCC-----------C--ChhHHHHHHHHHHHhCCcEEE
Confidence 344444555588788877776665211 11234699999999421 1 122111234455567999888
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--ceeEEEeccCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGSY 637 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~--~~~a~v~~~~~~ 637 (706)
.-|.||-.|---.. ..-+-...-.|+..++++++++.. ..++.++|.||||.|....++...+ .+.|+++.+-.+
T Consensus 159 VfN~RG~~g~~LtT-pr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw 235 (409)
T KOG1838|consen 159 VFNHRGLGGSKLTT-PRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW 235 (409)
T ss_pred EECCCCCCCCccCC-CceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc
Confidence 76777643321111 111222336899999999998753 2489999999999999999987644 366777777666
Q ss_pred CC
Q 005240 638 NK 639 (706)
Q Consensus 638 d~ 639 (706)
|.
T Consensus 236 d~ 237 (409)
T KOG1838|consen 236 DL 237 (409)
T ss_pred hh
Confidence 63
No 238
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.94 E-value=0.00012 Score=73.38 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=79.4
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE--cCCCCcCC-CCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA--GPSIPIIG-EGD 571 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~--~~~~~~~g-~g~ 571 (706)
-...++.|...++.+ .|++|+..|.+- ..|.......+..|++.|++.+. .++.|.+- ..+
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTGD-------------h~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTGD-------------HGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCCc-------------cchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 445577788753332 589998887531 23322223346677888986654 44433321 000
Q ss_pred C---CCc--h--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 572 K---LPN--D--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 572 ~---~~~--~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
. ... + ..+...+.+....+.|+.++++ .++||.|.||||+||.++++..|..+.++-..++.
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 0 000 1 1234567888899999999976 59999999999999999999998876666555543
No 239
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.94 E-value=0.00012 Score=77.28 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 555 RFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
.|.|+..+-+ |+|..... .........++...+++|.++.-++.+++-++|||+||++|..++.+.|+++..++.
T Consensus 73 d~nVI~VDw~---g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItg 149 (442)
T TIGR03230 73 SANVIVVDWL---SRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITG 149 (442)
T ss_pred CCEEEEEECC---CcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEE
Confidence 5888775554 23333221 122345567788888888765335778999999999999999999999999999998
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
..|.
T Consensus 150 LDPA 153 (442)
T TIGR03230 150 LDPA 153 (442)
T ss_pred EcCC
Confidence 8875
No 240
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.94 E-value=0.00037 Score=86.87 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc----------hhhHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----------DRFVEQL 582 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----------~~~~~~~ 582 (706)
.|.||++||.+.. ...| ...+..| +.+|.|+.++.+ |+|.+... ....+..
T Consensus 1371 ~~~vVllHG~~~s-----------~~~w----~~~~~~L-~~~~rVi~~Dl~---G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGT-----------GEDW----IPIMKAI-SGSARCISIDLP---GHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCC-----------HHHH----HHHHHHH-hCCCEEEEEcCC---CCCCCCCccccccccccccCCHHHH
Confidence 3679999996321 0111 1223333 456888886654 45544221 1123444
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
.+++...++.+ +.+++.++||||||.+++.++.++|+++++++..++
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 55544444432 346899999999999999999999999999988765
No 241
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00024 Score=68.33 Aligned_cols=114 Identities=13% Similarity=0.223 Sum_probs=70.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+.++.||.|..-|+-.+.+ ..|.+|.+.++. .|+..... ..|+..++||.|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqD-------------GkIKvWri~tG~ClRrFdrAH------------tkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQD-------------GKIKVWRIETGQCLRRFDRAH------------TKGVTCLSFSRDN 318 (508)
T ss_pred cceEEEeecccHHHhhccCcC-------------CcEEEEEEecchHHHHhhhhh------------ccCeeEEEEccCc
Confidence 356789999999888755443 378889888553 44432211 1456688999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
++ |.-. +.+. .+.+.-+ .+|+ .+....+...+....|++||..|+..+.+ +..++| +..
T Consensus 319 Sq-iLS~----sfD~--------tvRiHGl---KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD--gtvkvW--~~K 378 (508)
T KOG0275|consen 319 SQ-ILSA----SFDQ--------TVRIHGL---KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD--GTVKVW--HGK 378 (508)
T ss_pred ch-hhcc----cccc--------eEEEecc---ccchhHHHhcCccccccceEEcCCCCeEEEecCC--ccEEEe--cCc
Confidence 87 4311 1111 1233222 4443 45566677888999999999999987633 344444 444
Q ss_pred C
Q 005240 333 S 333 (706)
Q Consensus 333 ~ 333 (706)
+
T Consensus 379 t 379 (508)
T KOG0275|consen 379 T 379 (508)
T ss_pred c
Confidence 4
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.93 E-value=0.0014 Score=67.47 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=122.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCC--eEEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
-.+|+|+++...-..+....++ +. .+....|||-|. -|||-.. +..+......||.++ .+.....-+...
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr--~~--gi~dFsisP~~n~~~la~~tP---Ek~~kpa~~~i~sIp-~~s~l~tk~lfk 222 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLR--PV--GILDFSISPEGNHDELAYWTP---EKLNKPAMVRILSIP-KNSVLVTKNLFK 222 (561)
T ss_pred cCeEEEEecCCccccCchhhcc--cc--ceeeEEecCCCCCceEEEEcc---ccCCCCcEEEEEEcc-CCCeeeeeeeEe
Confidence 4678999983211112222222 23 378899999644 4666432 233345556666665 222222222222
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. --.+.|.+.|++|.+......... -.+.+...||+
T Consensus 223 ~~-----~~qLkW~~~g~~ll~l~~t~~ksn--------------------------------------KsyfgesnLyl 259 (561)
T COG5354 223 VS-----GVQLKWQVLGKYLLVLVMTHTKSN--------------------------------------KSYFGESNLYL 259 (561)
T ss_pred ec-----ccEEEEecCCceEEEEEEEeeecc--------------------------------------cceeccceEEE
Confidence 11 126789999999888754321100 00124578999
Q ss_pred EccCCCceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 162 GSLDGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 162 ~~l~g~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
+++++.--++. .. +.+..++|+|++++.+..+...+ ..+-++++.+.-.--+... .
T Consensus 260 ~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-----------a~~s~~~lr~Nl~~~~Pe~--~--------- 317 (561)
T COG5354 260 LRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-----------ASVSVFDLRGNLRFYFPEQ--K--------- 317 (561)
T ss_pred EeecccccceeccccccceeeeecccCCceeEEecccc-----------cceeecccccceEEecCCc--c---------
Confidence 99976222222 32 68899999999999998886553 4677778777622222111 1
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc-ccccceecCCCceEEEE
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNE 316 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~wspDg~~l~~~ 316 (706)
...+.|||.++. +++....+. .+.+-+++. . +....+....+ ......|||||..+...
T Consensus 318 ----rNT~~fsp~~r~-il~agF~nl---------~gni~i~~~---~-~rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 318 ----RNTIFFSPHERY-ILFAGFDNL---------QGNIEIFDP---A-GRFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred ----cccccccCcccE-EEEecCCcc---------ccceEEecc---C-CceEEEEEeecCCceEeeccCCceEEEec
Confidence 115679999987 554321110 112445555 2 34444443333 34455799999977653
No 243
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=0.0035 Score=74.72 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=71.5
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC--CCC-Ccc------cCccCCCCcc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--EDI-PVC------YNSVREGMRS 246 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~-p~~------~~~~~~g~~~ 246 (706)
....++++|||++|++.... ...|.+||++++..+.+...... ... ... ....-..+..
T Consensus 741 ~P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 45578999999998776544 25899999986655443321100 000 000 0000012447
Q ss_pred eeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc--------------cccccceecCCCce
Q 005240 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLA 312 (706)
Q Consensus 247 ~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------------~~~~~~~wspDg~~ 312 (706)
+++++||. ||+. +.. +..|.++|. +++....+.... .....+++++||+
T Consensus 809 vavd~dG~--LYVA-Ds~----------N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~- 871 (1057)
T PLN02919 809 VLCAKDGQ--IYVA-DSY----------NHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR- 871 (1057)
T ss_pred eeEeCCCc--EEEE-ECC----------CCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-
Confidence 78899986 5543 221 234777777 555555443211 1234568899997
Q ss_pred EEEEeeccccceEEEEEcCCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
|+++. ..+..|.++|+++++
T Consensus 872 lyVaD---t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVAD---TNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEE---CCCCEEEEEECCCCc
Confidence 44332 245578899988853
No 244
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.93 E-value=0.00075 Score=75.39 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=79.1
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEecCCcEEEE-EecCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF-TIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSpDg~~l~~-~~~~~~~~~~~~~~~~~ 120 (706)
.+|||+.. ...+|.++|.++...+.+ +..... +-+|.|||||+.|+| ++.+.-.
T Consensus 319 tkiAfv~~---------~~~~L~~~D~dG~n~~~ve~~~~~~-----i~sP~~SPDG~~vAY~ts~e~~~---------- 374 (912)
T TIGR02171 319 AKLAFRND---------VTGNLAYIDYTKGASRAVEIEDTIS-----VYHPDISPDGKKVAFCTGIEGLP---------- 374 (912)
T ss_pred eeEEEEEc---------CCCeEEEEecCCCCceEEEecCCCc-----eecCcCCCCCCEEEEEEeecCCC----------
Confidence 47888763 123999999999888888 655543 668999999999999 5432100
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc--CC-CceecCCC-ceEeeeeeCCCCcE-EEEEeec
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFGTP-AVYTAVEPSPDQKY-VLITSMH 195 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l--~g-~~~~lt~~-~~~~~~~~SpDG~~-i~~~~~~ 195 (706)
+...||+.+| +| .+.+|.-. ..+....+.+.|.. |+|++..
T Consensus 375 ----------------------------------g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------------GKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred ----------------------------------CCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcCC
Confidence 1257999999 34 55666544 56677778888875 5667665
Q ss_pred cCcccccccccccceEEEEecC---CCeeEEcccCCCC
Q 005240 196 RPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPA 230 (706)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~ 230 (706)
+..+...... ...-|.+... =+++++|.++...
T Consensus 421 ~nn~d~~~~~--~~stw~v~f~~gkfg~p~kl~dga~h 456 (912)
T TIGR02171 421 SNNKDDATFA--AYSTWQVPFANGKFGTPKKLFDGAYH 456 (912)
T ss_pred CCCcchhhhh--hcceEEEEecCCCCCCchhhhccccc
Confidence 4332111111 1223333333 2346677766543
No 245
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.91 E-value=0.013 Score=63.35 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=81.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.......|||++.+||+.+. .++..-.|.+.|+++|+...-.-.. ....+.|.+|++.|+|+.......
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~------~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITN------TSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhcc------cccceEEecCCCeEEEEEEcCCCC
Confidence 55678899999999999852 2366778999999998755432111 145789999999999986532221
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC---CceecCCC---ceEeeeeeCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP---AVYTAVEPSPD 185 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g---~~~~lt~~---~~~~~~~~SpD 185 (706)
-..||...+.+ +-+.+.+. .....+.-|..
T Consensus 199 --------------------------------------------p~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s 234 (682)
T COG1770 199 --------------------------------------------PDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRS 234 (682)
T ss_pred --------------------------------------------cceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccC
Confidence 14677777743 33334332 34556667778
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
.++|++...... ++++++.+.+
T Consensus 235 ~~yi~i~~~~~~----------tsE~~ll~a~ 256 (682)
T COG1770 235 EAYIVISLGSHI----------TSEVRLLDAD 256 (682)
T ss_pred CceEEEEcCCCc----------ceeEEEEecC
Confidence 888877664322 4688888887
No 246
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0036 Score=63.32 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.0
Q ss_pred ceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
+.||+++..| ..+.+... .....++|||||+.++++.+.. ..|+.++++
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~------------~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA------------NRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC------------CeEEEEecC
Confidence 6899999867 44555543 5566899999999998877653 578888776
No 247
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=97.91 E-value=5.3e-05 Score=79.62 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHCCeEEEEcCCCCc-CCC-CCC--------CCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHH
Q 005240 550 IFLARRFAVLAGPSIPI-IGE-GDK--------LPN---DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFM 615 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~-~g~-g~~--------~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~ 615 (706)
.|...+|.|++++.+|. .|. +.+ +.. ....++..+|+...++.+ + -.+ +.++||||||.+
T Consensus 67 ~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~---~~~~~~l~G~S~Gg~i 140 (351)
T TIGR01392 67 AIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL---G---IEQIAAVVGGSMGGMQ 140 (351)
T ss_pred CcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc---C---CCCceEEEEECHHHHH
Confidence 44568899999777762 121 110 000 122445555555555433 2 256 999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++.++.++|++++++|+.++..
T Consensus 141 a~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 141 ALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHChHhhheEEEEccCC
Confidence 9999999999999999988753
No 248
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.91 E-value=0.00038 Score=71.48 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
+....+++..-.+++.+.++++|...- .....+...|..|+.++
T Consensus 281 ~~~~~~~~~~pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 281 ELAEELKKKLPNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHHhhCCCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 666777776667899999999998764 56778888999998875
No 249
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.91 E-value=0.00098 Score=72.57 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=61.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+++..+.||.++ +|+-.+.+ ..+.+|.+..++--.+..+. +-+..++|.|-..
T Consensus 370 ~DILDlSWSKn~-fLLSSSMD-------------KTVRLWh~~~~~CL~~F~Hn-------------dfVTcVaFnPvDD 422 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSMD-------------KTVRLWHPGRKECLKVFSHN-------------DFVTCVAFNPVDD 422 (712)
T ss_pred hhheecccccCC-eeEecccc-------------ccEEeecCCCcceeeEEecC-------------CeeEEEEecccCC
Confidence 688899999886 55444444 37899999866544444443 1234667887554
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
. ||++-.- ...+.+|++ ...++..-+.....+..+.++|||+..++.+
T Consensus 423 r--yFiSGSL----------D~KvRiWsI---~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 423 R--YFISGSL----------DGKVRLWSI---SDKKVVDWNDLRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred C--cEeeccc----------ccceEEeec---CcCeeEeehhhhhhheeEEeccCCceEEEEE
Confidence 3 4553211 123556666 2122221223467788999999999988765
No 250
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.90 E-value=0.0007 Score=67.54 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=77.5
Q ss_pred ceeEeecCCCCCCC---CeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEE------cCC----
Q 005240 6 GIGIHRLLPDDSLG---PEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD------AET---- 71 (706)
Q Consensus 6 ~~~~~~~~~~~~~g---~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d------~~~---- 71 (706)
.|.|..+..+..++ +..-+..|..+. .+..++|||+|..||-..+ ++..-||... .++
T Consensus 37 ~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D--------~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 37 DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD--------GGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC--------CceEEEEEecCcCCccccchhhh
Confidence 45555555544444 333333344332 5778899999999988643 3334445433 122
Q ss_pred -Cce---eecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchh
Q 005240 72 -GEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (706)
Q Consensus 72 -g~~---~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (706)
.+. +++..+.. ..+-.+.|+||+..+++.+-+
T Consensus 109 ~ke~w~v~k~lr~h~----~diydL~Ws~d~~~l~s~s~d---------------------------------------- 144 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHR----DDIYDLAWSPDSNFLVSGSVD---------------------------------------- 144 (434)
T ss_pred CccceEEEEEecccc----cchhhhhccCCCceeeeeecc----------------------------------------
Confidence 111 11111111 125578999999988876421
Q ss_pred hhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCcEEEEEeecc
Q 005240 148 ESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHR 196 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (706)
..++.+|+ .|+... +.+. .++..++|.|-+++|+-.+..+
T Consensus 145 ---------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 ---------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ---------ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 56777788 775444 4444 6788999999999998766554
No 251
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.89 E-value=0.00013 Score=76.67 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch------hhHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSAE 587 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~D~~ 587 (706)
|.||++||.+.. ...| ...+..| +.+|.|++++.+ |+|.+.... ...+...+|+.
T Consensus 128 ~~ivllHG~~~~-----------~~~w----~~~~~~L-~~~~~Via~Dlp---G~G~S~~p~~~~~~~ys~~~~a~~l~ 188 (383)
T PLN03084 128 PPVLLIHGFPSQ-----------AYSY----RKVLPVL-SKNYHAIAFDWL---GFGFSDKPQPGYGFNYTLDEYVSSLE 188 (383)
T ss_pred CeEEEECCCCCC-----------HHHH----HHHHHHH-hcCCEEEEECCC---CCCCCCCCcccccccCCHHHHHHHHH
Confidence 678999996421 0111 1223334 468999986554 555543321 23455566666
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
..++.+ ..+++.++|+|+||.+++.++.++|++++.+|..++..
T Consensus 189 ~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 189 SLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred HHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 666554 23579999999999999999999999999999999764
No 252
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.88 E-value=0.01 Score=69.56 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred ceEEEEccCCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
..+-+++-+|+..-..+. +-...++|.|.|..|+-+.... + ..+|..+.-+|-......-......
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~-~---------~~~VvFfErNGLrhgeF~l~~~~~~-- 304 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP-D---------RHDVVFFERNGLRHGEFTLRFDPEE-- 304 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcC-C---------CcEEEEEecCCcEeeeEecCCCCCC--
Confidence 345555666765555555 4456899999999999777532 2 2467777777654433221110000
Q ss_pred cccCccCCCCcceeeecCCCceEEEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
..+..+.|++|+.- |+..
T Consensus 305 -------~~v~~l~Wn~ds~i-LAv~ 322 (928)
T PF04762_consen 305 -------EKVIELAWNSDSEI-LAVW 322 (928)
T ss_pred -------ceeeEEEECCCCCE-EEEE
Confidence 12458899999986 5543
No 253
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.87 E-value=0.00019 Score=73.77 Aligned_cols=165 Identities=14% Similarity=0.273 Sum_probs=99.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+...+|||||.-|..+.. +|...+|.. .|.-...+...... +...+|.|++..++|..
T Consensus 107 ~~~gRW~~dGtgLlt~GE--------DG~iKiWSr--sGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c~------- 164 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAGE--------DGVIKIWSR--SGMLRSTVVQNEES-----IRCARWAPNSNSIVFCQ------- 164 (737)
T ss_pred hhhcccCCCCceeeeecC--------CceEEEEec--cchHHHHHhhcCce-----eEEEEECCCCCceEEec-------
Confidence 456789999999977532 555666643 23332334444443 77899999998887762
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
.++++.-+|.- ++-+.-.. +-+-.+.|+|....|
T Consensus 165 -------------------------------------------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 165 -------------------------------------------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred -------------------------------------------CCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 15677666633 44444444 678899999999887
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+-.. . .....+||..|... ..... +..| +..++|.||. +|.+.
T Consensus 202 ~sgG-E------------D~kfKvWD~~G~~L---f~S~~-~ey~---------ITSva~npd~---~~~v~-------- 244 (737)
T KOG1524|consen 202 ASGG-E------------DFRFKIWDAQGANL---FTSAA-EEYA---------ITSVAFNPEK---DYLLW-------- 244 (737)
T ss_pred eecC-C------------ceeEEeecccCccc---ccCCh-hccc---------eeeeeecccc---ceeee--------
Confidence 6322 1 24567888776542 22211 1112 3477999993 33221
Q ss_pred cccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEe
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~ 317 (706)
..+. -++. ...+.+..++||+||.+++...
T Consensus 245 ----------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 ----------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ----------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1111 1122 2356788899999999988754
No 254
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.87 E-value=0.0014 Score=70.23 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=116.9
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.++||++|+.|+-.. ...|-..|+++++.. +...... -...+..+..+||+++|+.....
T Consensus 24 ~~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~e-d~d~ita~~l~~d~~~L~~a~rs------- 83 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNE-DEDEITALALTPDEEVLVTASRS------- 83 (775)
T ss_pred ceeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCcc-chhhhheeeecCCccEEEEeecc-------
Confidence 489999999997754 356888899998874 3222211 12235688999999988876421
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCC-C-ceEeeeeeCCCCcEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGT-P-AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~-~-~~~~~~~~SpDG~~i~ 190 (706)
..|-++++ +|+..+ +-. + ..+-.++++|.|..++
T Consensus 84 ------------------------------------------~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA 121 (775)
T KOG0319|consen 84 ------------------------------------------QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA 121 (775)
T ss_pred ------------------------------------------ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE
Confidence 33445555 453322 221 2 5677888999994443
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+... ...+.+||+.++....-..+ ++. +..+.|.|+-...|.+...
T Consensus 122 -tgga------------D~~v~VWdi~~~~~th~fkG~gGv-------------Vssl~F~~~~~~~lL~sg~------- 168 (775)
T KOG0319|consen 122 -TGGA------------DGRVKVWDIKNGYCTHSFKGHGGV-------------VSSLLFHPHWNRWLLASGA------- 168 (775)
T ss_pred -eccc------------cceEEEEEeeCCEEEEEecCCCce-------------EEEEEeCCccchhheeecC-------
Confidence 3222 24799999997765543333 211 3356777776553333211
Q ss_pred cccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
....+++||. ..+.. ..+..+...+.++.+++|+..+++... ...++++|+.+
T Consensus 169 ----~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~ 223 (775)
T KOG0319|consen 169 ----TDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQ 223 (775)
T ss_pred ----CCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhh
Confidence 1235778887 32222 233456778889999999998887652 23466667654
No 255
>PRK07581 hypothetical protein; Validated
Probab=97.87 E-value=5e-05 Score=79.45 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=53.3
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCchh----h-HH-----HHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHH
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPNDR----F-VE-----QLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAH 618 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~~----~-~~-----~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~ 618 (706)
.|...+|.|++++.+ |+|.+..... + .+ ...+|+.+....+.+. ..-+++ .|.|+||||++++.
T Consensus 66 ~l~~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--lgi~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIIIPNMF---GNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK--FGIERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEEecCC---CCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH--hCCCceEEEEEeCHHHHHHHH
Confidence 344578999996665 4555432210 0 01 1234444433434432 123674 78999999999999
Q ss_pred HHHhCCCceeEEEeccCC
Q 005240 619 LLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~ 636 (706)
++.++|++++.+|..++.
T Consensus 141 ~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHHHCHHHHhhheeeecC
Confidence 999999999999988654
No 256
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.83 E-value=2.8e-05 Score=86.98 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=84.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|. +..=+|.|..-..+ . +||+|++|||.+..++ ...+. .+.....+..+..+|+.+++| |.-
T Consensus 93 sEDC--LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs--------~~~~~--~~~~~~~~~~~~VVvVt~~YRLG~l 157 (545)
T KOG1516|consen 93 SEDC--LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGS--------ASSFE--IISPAYVLLLKDVVVVTINYRLGPL 157 (545)
T ss_pred cCCC--ceEEEeccCCCccC--C-CCEEEEEeCCceeecc--------ccchh--hcCchhccccCCEEEEEecccceec
Confidence 3465 44458888762221 2 8999999999764322 11110 111222334456777776665 444
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCC
Q 005240 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSY 637 (706)
Q Consensus 568 g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~ 637 (706)
|+.-.......++..+.|+..|++|+.+. .+ -||++|.|+|+|+||..+..++.. ...+|+.+|.++|..
T Consensus 158 GF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 158 GFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred eeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 43221111112455577999999999985 33 699999999999999999877743 235788888888753
No 257
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.83 E-value=0.00024 Score=77.28 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=60.6
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH----HHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLA 621 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~----~~~ 621 (706)
.+...|+++||.|++++-+ |.|.+.....+.+-...++.++++++.+. .+..++.+.|||+||.+++. ++.
T Consensus 211 Slv~~L~~qGf~V~~iDwr---gpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISWR---NPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEECC---CCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 5678899999999885554 33333222222222345577888888764 34578999999999998632 344
Q ss_pred hC-CCceeEEEeccCCCCCC
Q 005240 622 HA-PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 622 ~~-p~~~~a~v~~~~~~d~~ 640 (706)
.. ++++++++.++...|..
T Consensus 286 ~~~~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLDFS 305 (532)
T ss_pred hCCCCccceEEEEecCcCCC
Confidence 44 67899998888776643
No 258
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.81 E-value=0.013 Score=66.29 Aligned_cols=179 Identities=13% Similarity=0.181 Sum_probs=99.3
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
++.+..+..+.|||||+.++|..+. .....++|+++.. | .++.... .+....|+|+|+.+++...
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~------~~~~~~l~l~~~~-g---~~~~~~~-----~v~~~~~~~~g~~~~~~~~ 120 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTD------GGRVAQLYLVDVG-G---LITKTAF-----GVSDARWSPDGDRIAFLTA 120 (620)
T ss_pred cccCCcccccccCCCCCEEEEEecc------CCCcceEEEEecC-C---ceeeeec-----ccccceeCCCCCeEEEEec
Confidence 3456678999999999999998742 1336899999987 4 2222222 2678899999999988432
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpD 185 (706)
.......... . ...+.+....++.. ....++|+++..+....+... ..+..+.+.++
T Consensus 121 ~~~~~~~~~~--------~-----------~~~~~~~~~~~~~g---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 178 (620)
T COG1506 121 EGASKRDGGD--------H-----------LFVDRLPVWFDGRG---GERSDLYVVDIESKLIKLGLGNLDVVSFATDGD 178 (620)
T ss_pred ccccccCCce--------e-----------eeecccceeecCCC---CcccceEEEccCcccccccCCCCceeeeeeCCC
Confidence 2111100000 0 00000000011100 134689999986644444444 56667777777
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
++.++......... .......++....+.+..++..... ...+.|.++|+. +++...
T Consensus 179 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gk~-~~~~~~ 235 (620)
T COG1506 179 GRLVASIRLDDDAD------PWVTNLYVLIEGNGELESLTPGEGS-------------ISKLAFDADGKS-IALLGT 235 (620)
T ss_pred CceeEEeeeccccC------CceEeeEEEecCCCceEEEcCCCce-------------eeeeeeCCCCCe-eEEecc
Confidence 77777665543200 0013344444345555665555433 225688999987 555543
No 259
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.81 E-value=0.0034 Score=62.21 Aligned_cols=206 Identities=15% Similarity=0.082 Sum_probs=112.5
Q ss_pred ceEEEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..++++|. +| ....+... -.+.--.|||||++|+.+.++.... ...|-+||+.. ..+++...+...
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g--------~G~IgVyd~~~-~~~ri~E~~s~G 98 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETG--------RGVIGVYDAAR-GYRRIGEFPSHG 98 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCC--------cEEEEEEECcC-CcEEEeEecCCC
Confidence 56888888 66 44455544 3455678999999998777654321 35789999983 334443332211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC---------CccccCccceeeeecCCCCCCCCce-E--Eee--c
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD---------ANVEVSPRDIIYTQPAEPAEGEKPE-I--LHK--L 297 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~---------~~~~~~~~~~l~~~d~~~~~~~~~~-~--l~~--~ 297 (706)
-|+-.+.|.|||+. |+.. +++- .-+...+...|..+|. .+|++. + |.. .
T Consensus 99 ----------IGPHel~l~pDG~t-LvVA---NGGI~Thpd~GR~kLNl~tM~psL~~ld~---~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 99 ----------IGPHELLLMPDGET-LVVA---NGGIETHPDSGRAKLNLDTMQPSLVYLDA---RSGALLEQVELPPDLH 161 (305)
T ss_pred ----------cChhhEEEcCCCCE-EEEE---cCCCccCcccCceecChhhcCCceEEEec---CCCceeeeeecCcccc
Confidence 23447899999987 6533 2221 1122233445666666 566643 3 322 2
Q ss_pred ccccccceecCCCceEEEEeeccc---cceEEEEEcCCCCCCCceeeecCcccc-cccCCCCCceEeccCCCEEEEeeec
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVLFDRVFEN-VYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
.-.+..++|.+||..++-...... ...-|.+....+ ..+.+ ...-.. .....-.-+++++++|..++++.-+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~-~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLL-PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceec-cCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 346788999999986665443221 222344444333 12222 111000 0001112247778888888777522
Q ss_pred cCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 374 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 374 ~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
+.. +..+|.++|+......
T Consensus 238 ------------------Gg~--~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 ------------------GGR--VAVWDAATGRLLGSVP 256 (305)
T ss_pred ------------------CCE--EEEEECCCCCEeeccc
Confidence 222 4456777887655443
No 260
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.75 E-value=0.00018 Score=70.28 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=81.4
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
-....+++.||.+|...++--..-..+.+ --+|+.+-|. .+|...+ .+..-++.||.|+-.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng--q~LvIC~EGN---------------AGFYEvG--~m~tP~~lgYsvLGw 274 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG--QDLVICFEGN---------------AGFYEVG--VMNTPAQLGYSVLGW 274 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC--ceEEEEecCC---------------ccceEee--eecChHHhCceeecc
Confidence 45677888899999887775432111111 2456655553 1232222 123346799999985
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
|..|..| +..- .+.......+.++++|.++. ++ -++.|.++|||-||+-++|++..+|+ ++|+|..+..-|
T Consensus 275 NhPGFag---STG~-P~p~n~~nA~DaVvQfAI~~Lgf-~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDD 346 (517)
T KOG1553|consen 275 NHPGFAG---STGL-PYPVNTLNAADAVVQFAIQVLGF-RQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDD 346 (517)
T ss_pred CCCCccc---cCCC-CCcccchHHHHHHHHHHHHHcCC-CccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhh
Confidence 5443322 2111 11111222233567888775 55 46889999999999999999999975 788888876555
No 261
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.0048 Score=63.21 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=121.6
Q ss_pred CCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecC
Q 005240 30 GAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 30 ~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
...++...|||..- .+|.++ +...+|| +..+-..++ +.++... +.+..+-.||+.|+..-
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~---------S~rvqly--~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaGD-- 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS---------SVRVQLY--SSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAGD-- 87 (487)
T ss_pred cCcceeEecCCCCCCceEEec---------ccEEEEE--ecchhhhhhhHHhhccc-----eeEEEeecCCeEEEccC--
Confidence 34688899999333 234433 3334554 555554444 5555443 67788889999877541
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~Sp 184 (706)
..+.+-++|.+. -.+.+... ..+....|+|
T Consensus 88 -----------------------------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~ 120 (487)
T KOG0310|consen 88 -----------------------------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSP 120 (487)
T ss_pred -----------------------------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEecc
Confidence 125666777644 34444444 5677888999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
+++.++.+..+. .-+.+|++++..+. +...+.+ +.++..+|+|-... |++. .
T Consensus 121 ~d~t~l~s~sDd------------~v~k~~d~s~a~v~--~~l~~ht----------DYVR~g~~~~~~~h-ivvt---G 172 (487)
T KOG0310|consen 121 QDNTMLVSGSDD------------KVVKYWDLSTAYVQ--AELSGHT----------DYVRCGDISPANDH-IVVT---G 172 (487)
T ss_pred cCCeEEEecCCC------------ceEEEEEcCCcEEE--EEecCCc----------ceeEeeccccCCCe-EEEe---c
Confidence 998887665543 46778899887752 2222221 44667889998777 5543 2
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEE-eecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
+.+ +.|.+||. .......+ .+....+..+-+.|.|..|+.+. .+.+-++|+.++
T Consensus 173 sYD--------g~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 173 SYD--------GKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTG 227 (487)
T ss_pred CCC--------ceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCC
Confidence 222 24778887 33323333 35567888999999999888643 334777788754
No 262
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.74 E-value=0.0005 Score=64.11 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=118.7
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+...+||-|.++|+.... +.--.||.++-....+..+..+++ +++...|--..+.|+..+++
T Consensus 101 hivk~~af~~ds~~lltgg~--------ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSadd--- 164 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGGQ--------EKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSADD--- 164 (334)
T ss_pred heeeeEEecccchhhhccch--------HHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeeccC---
Confidence 35677889999988866332 222334433333334444443333 37777887666665543211
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..+-++|. +| +.+.|.....+.++.+|+||++
T Consensus 165 ----------------------------------------------~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 165 ----------------------------------------------KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred ----------------------------------------------CceEEEEeccCcEEEEEecCCCCcceeeccCCCE
Confidence 45666687 77 6777777778889999999998
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|..... +.|..|+.++=.+-+-.+.+.. +...+.+|+.. ++++ ++..
T Consensus 199 lTia~g--------------ssV~Fwdaksf~~lKs~k~P~n-------------V~SASL~P~k~--~fVa----Gged 245 (334)
T KOG0278|consen 199 LTIAYG--------------SSVKFWDAKSFGLLKSYKMPCN-------------VESASLHPKKE--FFVA----GGED 245 (334)
T ss_pred EEEecC--------------ceeEEeccccccceeeccCccc-------------cccccccCCCc--eEEe----cCcc
Confidence 864432 3577788764332222222211 22446788774 4433 2222
Q ss_pred ccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. .+|.+|- .+|+..... .+.+.+-.+.|||||...+..+ +++..+||...+..
T Consensus 246 ~-------~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 246 F-------KVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS--EDGTIRLWQTTPGK 300 (334)
T ss_pred e-------EEEEEec---cCCceeeecccCCCCceEEEEECCCCceeeccC--CCceEEEEEecCCC
Confidence 2 3777777 566555442 4467777889999999666554 44778999998765
No 263
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=97.74 E-value=0.0003 Score=65.57 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=28.0
Q ss_pred CCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+..++++|.|+||+.|.+++.+++ ++| |+++|...
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCC
Confidence 345999999999999999999883 455 67777654
No 264
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.70 E-value=0.0077 Score=62.40 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=62.7
Q ss_pred ceEEEEccCCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~ 233 (706)
+.|-.+.-+|-. ..+.+. ..+.+.+|.|++..|+|.... ++++-.+. ..++-+...+++-
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHDGi--- 188 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHDGL--- 188 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccCcE---
Confidence 567777777722 223333 678899999999999998743 45554444 2222222222211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---ecccccccceecCC
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDD 309 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~wspD 309 (706)
+-.+.|++...- |+ .+|+.. ...+||. .| +.|. .+...+.+++|.||
T Consensus 189 ----------iL~~~W~~~s~l-I~-----sgGED~-------kfKvWD~---~G---~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 189 ----------VLSLSWSTQSNI-IA-----SGGEDF-------RFKIWDA---QG---ANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred ----------EEEeecCccccc-ee-----ecCCce-------eEEeecc---cC---cccccCChhccceeeeeeccc
Confidence 226688888763 22 223322 2556766 22 2333 34677889999999
No 265
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.70 E-value=0.0013 Score=70.57 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=117.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEE---cCCCceee-cccCCCc--cccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD---AETGEAKP-LFESPDI--CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d---~~~g~~~~-lt~~~~~--~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
-.+....+||++.++..+. +....+|-.. ...|..++ |.-...+ .+...+..+..||||++|+...
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 4778899999999988764 4445555322 12333322 2111111 1122266889999999998763
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCce-ecCCC-ceEeeeeeC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK-DFGTP-AVYTAVEPS 183 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~-~lt~~-~~~~~~~~S 183 (706)
-. ..-.+|-+|-= +.. .|-.+ -.+.++.+|
T Consensus 528 Ld-----------------------------------------------nTVkVyflDtl-KFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 528 LD-----------------------------------------------NTVKVYFLDTL-KFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred cc-----------------------------------------------CeEEEEEecce-eeeeeecccccceeEEecc
Confidence 21 11233333310 111 11112 367799999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
||++.|+-.+.+ ..+-+|-++ |...+.+..+.. .+..+.|-|+.. ++|...
T Consensus 560 ~DSklivTgSAD-------------KnVKiWGLdFGDCHKS~fAHdD-------------Svm~V~F~P~~~--~FFt~g 611 (888)
T KOG0306|consen 560 PDSKLIVTGSAD-------------KNVKIWGLDFGDCHKSFFAHDD-------------SVMSVQFLPKTH--LFFTCG 611 (888)
T ss_pred CCcCeEEeccCC-------------CceEEeccccchhhhhhhcccC-------------ceeEEEEcccce--eEEEec
Confidence 999998755443 478899998 666666655442 234668888432 666643
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
.++ .+..||.+ .=...+.|..+...+.-.+.+|+|.+++..+ ++...++|..+
T Consensus 612 KD~-----------kvKqWDg~--kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~t 664 (888)
T KOG0306|consen 612 KDG-----------KVKQWDGE--KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERT 664 (888)
T ss_pred Ccc-----------eEEeechh--hhhhheeeccchheeeeeEEcCCCCeEEecc--CCceeEeeecc
Confidence 322 35567653 1234556666777788889999999887654 33456677664
No 266
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.68 E-value=0.0015 Score=73.12 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=53.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~ 83 (706)
+|.+.|.+. +..+.|. +.....+..|.|||||++|||..... . -.+...||+.++.+.. ..+|- .+.
T Consensus 330 ~L~~~D~dG----~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e---~-~~g~s~vYv~~L~t~~~~~vkl~-ve~- 398 (912)
T TIGR02171 330 NLAYIDYTK----GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE---G-LPGKSSVYVRNLNASGSGLVKLP-VEN- 398 (912)
T ss_pred eEEEEecCC----CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec---C-CCCCceEEEEehhccCCCceEee-ccc-
Confidence 566666655 7777772 23444688999999999999933321 0 1367889999987643 33331 111
Q ss_pred cccccccceEE--ecCCcE-EEEEecC
Q 005240 84 CLNAVFGSFVW--VNNSTL-LIFTIPS 107 (706)
Q Consensus 84 ~~~~~~~~~~w--SpDg~~-l~~~~~~ 107 (706)
...|.| .++|.. |+|.++.
T Consensus 399 -----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 399 -----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred -----ccccceEecCCCCeEEEEEcCC
Confidence 235567 478865 6666543
No 267
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.67 E-value=8e-05 Score=49.72 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=25.7
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~ 66 (706)
+|++. .......|.|||||++|+|++++++ .+..+||+
T Consensus 2 ~~~t~--~~~~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTN--SPGDDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES---SSSSEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCccc--CCccccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 34543 3335889999999999999997521 36778885
No 268
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00064 Score=68.21 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=107.6
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..-+++++||+.||.... ++.-.+|-++-.........+ .. .+.++.|||||+.|++.+.
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~t~l~e~~~-~~-----eV~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSMLTILEEIAH-HA-----EVKDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcchhhhhhHhh-cC-----ccccceeCCCCcEEEEecC------
Confidence 356789999999988643 555666655433222222211 12 3889999999999998742
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC---ceEeeeeeCCCC-
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ- 186 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG- 186 (706)
..+.++++ +| ...+++.. ..+..+.|+-|+
T Consensus 207 --------------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 207 --------------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred --------------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 23444455 55 55555533 345678888777
Q ss_pred --cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 187 --KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 187 --~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
...++......... ...++.+|.-+ ..-++.... ....++..+..|+||+. ++.-..
T Consensus 243 ~~~l~laa~~~~~~~v------~~~~~~~w~~~--~~l~~~~~~----------~~~~siSsl~VS~dGkf-~AlGT~-- 301 (398)
T KOG0771|consen 243 QETLRLAASQFPGGGV------RLCDISLWSGS--NFLRLRKKI----------KRFKSISSLAVSDDGKF-LALGTM-- 301 (398)
T ss_pred CceEEEEEecCCCCce------eEEEeeeeccc--cccchhhhh----------hccCcceeEEEcCCCcE-EEEecc--
Confidence 33333332211100 01334444322 111111100 00123557899999996 554321
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEE--e--ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEIL--H--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. +.+-++++ .+++.+ . .+...+..++|+||.++++-.+.. ...+|..+..+.
T Consensus 302 d----------GsVai~~~-----~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~--~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 D----------GSVAIYDA-----KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD--NEAAVTKLAVDK 357 (398)
T ss_pred C----------CcEEEEEe-----ceeeeeEeehhhheeeeeeEEEcCCcCcccccccC--CceeEEEEeecc
Confidence 1 12445544 233332 2 345678899999999988875432 344566666544
No 269
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=97.65 E-value=0.0018 Score=62.70 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=76.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
...+.+...+|..++-.-.+-+.-. .+.+..+||-+||.| .++.. +......|.+.|+.++..
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~--~gs~~gTVv~~hGsP--------------GSH~D-FkYi~~~l~~~~iR~I~i 68 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLP--SGSPLGTVVAFHGSP--------------GSHND-FKYIRPPLDEAGIRFIGI 68 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCC--CCCCceeEEEecCCC--------------CCccc-hhhhhhHHHHcCeEEEEe
Confidence 3456666666654443333222211 123467999999976 22322 234567788999999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+.|. |+-.......+.+.... .-++.+.++--++ .++.++|||.|+-.|+.++...| ..++++.+|+
T Consensus 69 N~PGf-~~t~~~~~~~~~n~er~---~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 69 NYPGF-GFTPGYPDQQYTNEERQ---NFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CCCCC-CCCCCCcccccChHHHH---HHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 77532 32222222222222221 1233344433354 89999999999999999999995 3466666654
No 270
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.64 E-value=0.00032 Score=75.95 Aligned_cols=90 Identities=23% Similarity=0.148 Sum_probs=59.8
Q ss_pred HHHHHHH-CCeEEEEcCCCCcCCCCCCCCchh---------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEechHHHH
Q 005240 547 SSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDR---------FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 547 ~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~~---------~~~~~~~D~~~~~~~l~~~~-~id~~~i~i~G~S~GG~~ 615 (706)
.+..||+ .|-+|+. .-.|-||++.+... ..++++.|+...++++..+. ..+..+++++|+||||.|
T Consensus 50 ~~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~L 126 (434)
T PF05577_consen 50 FMWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGAL 126 (434)
T ss_dssp HHHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHH
T ss_pred hHHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHH
Confidence 3445665 5555544 12224666654321 25688999999999998653 345569999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCCCCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
|+|+-.++|+.|.++++.++....
T Consensus 127 aaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 127 AAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp HHHHHHH-TTT-SEEEEET--CCH
T ss_pred HHHHHhhCCCeeEEEEeccceeee
Confidence 999999999999998888876543
No 271
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.64 E-value=0.00047 Score=73.17 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HCCeEEEEcCCCCcCC-C-CCCCCc------------hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHHHH
Q 005240 553 ARRFAVLAGPSIPIIG-E-GDKLPN------------DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTA 617 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g-~-g~~~~~------------~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~a~ 617 (706)
..+|.|++++-+|..+ . +.+... ........+|+.+.++.+ +-++ +.++|+||||.+++
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~ 162 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL------GITRLAAVVGGSMGGMQAL 162 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh------CCCCceEEEEECHHHHHHH
Confidence 5789999977655211 1 111000 112445566666655543 2356 58999999999999
Q ss_pred HHHHhCCCceeEEEeccCC
Q 005240 618 HLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~ 636 (706)
.++.++|++++.+|..++.
T Consensus 163 ~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 163 EWAIDYPDRVRSALVIASS 181 (379)
T ss_pred HHHHhChHhhhEEEEECCC
Confidence 9999999999999988754
No 272
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.62 E-value=0.0021 Score=67.64 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=77.8
Q ss_pred ceEEEEccCCCcee-------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccC
Q 005240 157 AQLVLGSLDGTAKD-------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDL 227 (706)
Q Consensus 157 ~~l~~~~l~g~~~~-------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~ 227 (706)
-.||++...|-.+. |+.+ .-+..+.|.|=..-++.++. +...|.+||+...+.+ +|..+
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------------yd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------------YDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------------ccceeeeeehhhhhhhheeccC
Confidence 56777777663322 2322 45666777764333322221 2368999999865433 33222
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec----cccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL----DLRFRS 303 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~ 303 (706)
. +++..|+|||||+. ++-+. + .+.|++++. .. ..+.+... ..+-..
T Consensus 720 t-------------dqIf~~AWSpdGr~-~AtVc--K----------Dg~~rVy~P---rs-~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 720 T-------------DQIFGIAWSPDGRR-IATVC--K----------DGTLRVYEP---RS-REQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred c-------------CceeEEEECCCCcc-eeeee--c----------CceEEEeCC---CC-CCCccccCCCCccCccee
Confidence 2 34668999999998 76543 1 124556554 22 22233222 234456
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.|.=||+.|++...++....+|-++|..+
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 789999999988765554555677777665
No 273
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.62 E-value=0.00023 Score=72.69 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEEe-cCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-H-CCeEEEEcCCCCcC--CCC
Q 005240 496 TATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-A-RRFAVLAGPSIPII--GEG 570 (706)
Q Consensus 496 ~~~l~~-P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~G~~v~~~~~~~~~--g~g 570 (706)
.-|++. |.+++++. -|+|||+|||++..+.. .........+. . ...+++..+|.-.. .+|
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~------------p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~ 171 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTT------------PSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHG 171 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCC------------HHHHHHHHHHHHHcCCCeEEEEeccccccccCC
Confidence 357887 87766654 39999999997642110 00111111111 1 13355554553221 122
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccCCCCCC
Q 005240 571 DKLPNDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 571 ~~~~~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~~~d~~ 640 (706)
..+ ...+.++.++.++|.+ ++ .++|.+||.|+||.|++.++..- ...-+.+|+.+|-.+..
T Consensus 172 ~~y------PtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 172 HKY------PTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred CcC------chHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 222 2235667788999994 44 37999999999999998887432 12368899999876544
No 274
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.60 E-value=0.00012 Score=71.48 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 556 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
|.|++.+-+ |+|.+.. ...+-.-...|+.+.++.+++.--+ +++.++||||||.+++.++.++|++++++++.
T Consensus 1 f~vi~~d~r---G~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVILFDLR---GFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEEEECT---TSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEEEeCC---CCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 556765554 4444432 1112122355666667767664223 45999999999999999999999999999999
Q ss_pred cCC
Q 005240 634 SGS 636 (706)
Q Consensus 634 ~~~ 636 (706)
++.
T Consensus 76 ~~~ 78 (230)
T PF00561_consen 76 SPP 78 (230)
T ss_dssp SES
T ss_pred eee
Confidence 885
No 275
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.59 E-value=0.0066 Score=59.03 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred ceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC
Q 005240 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (706)
Q Consensus 209 ~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 288 (706)
.-|.+||.-+++.|.-...-.+-..- .+...+.|||||.+ |+ . +..+ -|.+.|.. ..|
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~-------taAhsL~Fs~DGeq-lf-a-----Gykr-------cirvFdt~-RpG 190 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEY-------TAAHSLQFSPDGEQ-LF-A-----GYKR-------CIRVFDTS-RPG 190 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhh-------hhheeEEecCCCCe-Ee-e-----cccc-------eEEEeecc-CCC
Confidence 36889999877766432221100000 11236799999998 54 2 1111 24555551 122
Q ss_pred CCc---eEEee----cccccccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 289 EKP---EILHK----LDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 289 ~~~---~~l~~----~~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
..- ..++. ..+.+.-++++|-. +.+++.+ +. +...||.-+ + ..|..+..+.- .|+..+.|
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-Y~-q~~giy~~~--~--~~pl~llggh~------gGvThL~~ 258 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-YG-QRVGIYNDD--G--RRPLQLLGGHG------GGVTHLQW 258 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCCCCcceeeec-cc-ceeeeEecC--C--CCceeeecccC------CCeeeEEe
Confidence 211 12222 24556778899964 5666654 32 223344443 3 33555533221 24456889
Q ss_pred ccCCCEEEEee
Q 005240 361 TSTGTNVIAKI 371 (706)
Q Consensus 361 s~dg~~l~~~~ 371 (706)
.+||.+++..+
T Consensus 259 ~edGn~lfsGa 269 (406)
T KOG2919|consen 259 CEDGNKLFSGA 269 (406)
T ss_pred ccCcCeecccc
Confidence 99999876655
No 276
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00053 Score=77.06 Aligned_cols=235 Identities=15% Similarity=0.209 Sum_probs=142.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe----EEEEeeccccccccCCceeEEEEEc--CCCceeecc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR----IAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLF 78 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~----laf~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt 78 (706)
.++.|..++-.+..+..+++-.+....+....+|++-|.. ||=.. .+|.-.||-.+. ++++...|.
T Consensus 39 ~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~--------edG~I~ly~p~~~~~~~~~~~la 110 (1049)
T KOG0307|consen 39 ASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL--------EDGNIVLYDPASIIANASEEVLA 110 (1049)
T ss_pred cccceeeecccCccccccccccccccccceeeeecccCCCccceeeccc--------cCCceEEecchhhccCcchHHHh
Confidence 4455666655334444567766777778899999999998 44322 155555554443 233333333
Q ss_pred cCCCccccccccceEEecCCc-EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccc
Q 005240 79 ESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (706)
Q Consensus 79 ~~~~~~~~~~~~~~~wSpDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (706)
....+ .+.|..+.+.+... .|+... ..+
T Consensus 111 ~~~~h--~G~V~gLDfN~~q~nlLASGa-------------------------------------------------~~g 139 (1049)
T KOG0307|consen 111 TKSKH--TGPVLGLDFNPFQGNLLASGA-------------------------------------------------DDG 139 (1049)
T ss_pred hhccc--CCceeeeeccccCCceeeccC-------------------------------------------------CCC
Confidence 22211 22377788998877 555332 227
Q ss_pred eEEEEccCCCceecCC---C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCC
Q 005240 158 QLVLGSLDGTAKDFGT---P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAE 231 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~---~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~ 231 (706)
+|+++|+..--++.+. . .++..++|...-.+|+-+.... ..+.+||+..++ +..+......
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~~- 206 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPGR- 206 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCCc-
Confidence 8999999652222222 1 6788999988888886554432 367899998553 3334333221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
.....+.|.||....|+..++ +.... .|-+||+. +.+.-.+.++.+...+-.+.|++.+.
T Consensus 207 ----------~~~S~l~WhP~~aTql~~As~-dd~~P--------viqlWDlR-~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 207 ----------MHCSVLAWHPDHATQLLVASG-DDSAP--------VIQLWDLR-FASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred ----------cceeeeeeCCCCceeeeeecC-CCCCc--------eeEeeccc-ccCCchhhhcccccceeeeccCCCCc
Confidence 002268999999886665532 22222 36678862 22334455667788889999999886
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.++..+ . ...+++..|.+++
T Consensus 267 ~lllSs-g--kD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 267 RLLLSS-G--KDNRIICWNPNTG 286 (1049)
T ss_pred hhhhcc-c--CCCCeeEecCCCc
Confidence 666554 2 3346888888884
No 277
>PRK05855 short chain dehydrogenase; Validated
Probab=97.57 E-value=0.00045 Score=78.26 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=64.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..||..|..+.+-+++ .|.||++||.+.. ...| ......| +.||.|++.+.+ |
T Consensus 9 ~~~g~~l~~~~~g~~~--------~~~ivllHG~~~~-----------~~~w----~~~~~~L-~~~~~Vi~~D~~---G 61 (582)
T PRK05855 9 SSDGVRLAVYEWGDPD--------RPTVVLVHGYPDN-----------HEVW----DGVAPLL-ADRFRVVAYDVR---G 61 (582)
T ss_pred eeCCEEEEEEEcCCCC--------CCeEEEEcCCCch-----------HHHH----HHHHHHh-hcceEEEEecCC---C
Confidence 3488888877664321 3679999996421 1111 1233444 689999986655 5
Q ss_pred CCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 569 EGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 569 ~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+|.+... ........+|+..+++.+. + ..++.++||||||.+++.++.+
T Consensus 62 ~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 62 AGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhC
Confidence 5555332 1235567778888777652 1 2349999999999988777765
No 278
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.56 E-value=0.0013 Score=60.43 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=82.3
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
....+.++.+.+..+-+.+..-. . --++|++||- +.. .........+..+.+.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg-----s---~e~vvlcHGf-----------rS~--Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG-----S---TEIVVLCHGF-----------RSH--KNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC-----C---ceEEEEeecc-----------ccc--cchHHHHHHHHHHHhcCceEEE
Confidence 34455555555555555444221 1 3588899983 111 0111112345667789999998
Q ss_pred cCCCCcCCCCCCCCchh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 561 GPSIPIIGEGDKLPNDR--FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~--~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+.+|.|++...-. .++..++|+..+++++..... .-=.|.|||-||-.++..+.++.+ ++-++..+|.+|
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 44446666644322 233456999999999975322 123689999999999999999955 777888888776
Q ss_pred C
Q 005240 639 K 639 (706)
Q Consensus 639 ~ 639 (706)
.
T Consensus 141 l 141 (269)
T KOG4667|consen 141 L 141 (269)
T ss_pred h
Confidence 3
No 279
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.55 E-value=0.012 Score=55.80 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=122.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-------CCc-eee
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGE-AKP 76 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-------~g~-~~~ 76 (706)
.++.++|+.. |+..-. .+.+..+...-||++|..++++... .+ .....|.+.++. +.+ ..+
T Consensus 74 ~t~kLWDv~t----Gk~la~--~k~~~~Vk~~~F~~~gn~~l~~tD~---~m--g~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 74 QTAKLWDVET----GKQLAT--WKTNSPVKRVDFSFGGNLILASTDK---QM--GYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred ceeEEEEcCC----CcEEEE--eecCCeeEEEeeccCCcEEEEEehh---hc--CcceEEEEEEccCChhhhcccCceEE
Confidence 4678899976 765544 4566668889999999999998741 11 334556666665 333 233
Q ss_pred cccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 77 LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 77 lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
|...... +....|+|-|+.|+..-. .
T Consensus 143 I~t~~sk-----it~a~Wg~l~~~ii~Ghe-------------------------------------------------~ 168 (327)
T KOG0643|consen 143 IPTPDSK-----ITSALWGPLGETIIAGHE-------------------------------------------------D 168 (327)
T ss_pred ecCCccc-----eeeeeecccCCEEEEecC-------------------------------------------------C
Confidence 3222221 456789999998876421 1
Q ss_pred ceEEEEcc-CC-Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE--cccCCCC
Q 005240 157 AQLVLGSL-DG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~~~ 230 (706)
+.|-.+|+ +| +...- ... ..+..+.+|||..+.+-.+.+. +..++|..+-.+.+ .+..+.
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~Pv- 234 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERPV- 234 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeecccc-
Confidence 45666677 55 33222 122 4677899999998876555442 45667766443322 122221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCcc--------ceeeeecCCCCCCCCceEEeecccccc
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR--------DIIYTQPAEPAEGEKPEILHKLDLRFR 302 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~--------~~l~~~d~~~~~~~~~~~l~~~~~~~~ 302 (706)
...+.+|--.. ++. .+|.....+... .+.|-.=. -.+.-++..+-+.++
T Consensus 235 --------------N~aaisP~~d~-Vil----gGGqeA~dVTTT~~r~GKFEArFyh~i~----eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 235 --------------NTAAISPLLDH-VIL----GGGQEAMDVTTTSTRAGKFEARFYHLIF----EEEIGRVKGHFGPIN 291 (327)
T ss_pred --------------cceecccccce-EEe----cCCceeeeeeeecccccchhhhHHHHHH----HHHhccccccccCcc
Confidence 13356665443 221 222211110000 00000000 012334555677889
Q ss_pred cceecCCCceEEEEeeccccceEEEEEc
Q 005240 303 SVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 303 ~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
.++++|||+.... ..+++..+|...|
T Consensus 292 svAfhPdGksYsS--GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 292 SVAFHPDGKSYSS--GGEDGYVRLHHFD 317 (327)
T ss_pred eeEECCCCccccc--CCCCceEEEEEec
Confidence 9999999996553 2344666776665
No 280
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.0045 Score=65.90 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
++...++..++||||++||+.. -....||.+..+.... +.+-..+.. .-....+.++-|+..+++.+.
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~vk~~~v~~~~~~--~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNVKVINVDDVPLA--LLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred CCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcceeEEEeccchhh--hccceeeEEEecCceEEEEec
Confidence 4455788899999999999976 3346788777765221 112111111 111345677888877766641
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC----CceecCCC---ceEee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TAKDFGTP---AVYTA 179 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g----~~~~lt~~---~~~~~ 179 (706)
...+|..+++++ +...+... +.+..
T Consensus 449 ------------------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 449 ------------------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ------------------------------------------------ccceeEEEEecCcchhhhhccccccCCCccee
Confidence 114566666632 22222222 57789
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
+..||||++|+..+.. ..|++|++.+.+-+.|.
T Consensus 481 l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 9999999999988855 38999999988777665
No 281
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.54 E-value=0.00054 Score=77.09 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC-CC-----------------
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK-LP----------------- 574 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~-~~----------------- 574 (706)
.|+||++||-.. .......++..|+++||.|+.++.+ |+|++ +.
T Consensus 449 ~P~VVllHG~~g---------------~~~~~~~lA~~La~~Gy~VIaiDlp---GHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITG---------------AKENALAFAGTLAAAGVATIAIDHP---LHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCC---------------CHHHHHHHHHHHHhCCcEEEEeCCC---CCCccccccccccccccccCcccee
Confidence 589999999421 1111124566788899999985543 23333 11
Q ss_pred c-------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 575 N-------DRFVEQLVSSAEAAVEEVV------RR----GVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 575 ~-------~~~~~~~~~D~~~~~~~l~------~~----~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+ ++...+.+.|+......+. ++ ...+..+|.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 0 1234677888888877776 21 125678999999999999999998764
No 282
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.47 E-value=0.11 Score=53.97 Aligned_cols=149 Identities=9% Similarity=0.128 Sum_probs=86.7
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.....++..|+...++-.... ..+.+|+ +.+ +-.++...+ .....|.|.|
T Consensus 369 delwgla~hps~~q~~T~gqd-------------k~v~lW~-~~k~~wt~~~~d~---------------~~~~~fhpsg 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQD-------------KHVRLWN-DHKLEWTKIIEDP---------------AECADFHPSG 419 (626)
T ss_pred cceeeEEcCCChhheeeccCc-------------ceEEEcc-CCceeEEEEecCc---------------eeEeeccCcc
Confidence 456677888887766533322 4788888 221 112222222 2245788888
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. |+.-. ..++++++|. ++..+.++......++-+.++|||..|+..+ +++..-||+++.++
T Consensus 420 -~-va~Gt------------~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 420 -V-VAVGT------------ATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS--HDNHIYIYRVSANG 480 (626)
T ss_pred -e-EEEee------------ccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEec--CCCeEEEEEECCCC
Confidence 3 55321 1235788888 5555555655578888999999999999875 33344466666655
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEE
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 383 (706)
. ....+-.-....+ ..+-||+|++++.... .+...+|+
T Consensus 481 ~--~y~r~~k~~gs~i------thLDwS~Ds~~~~~~S----~d~eiLyW 518 (626)
T KOG2106|consen 481 R--KYSRVGKCSGSPI------THLDWSSDSQFLVSNS----GDYEILYW 518 (626)
T ss_pred c--EEEEeeeecCcee------EEeeecCCCceEEecc----CceEEEEE
Confidence 3 2222211111111 1256999999987765 34555665
No 283
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.44 E-value=0.0029 Score=62.88 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=80.8
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v 558 (706)
...+.+.++. |+..|....+.-+++.++ .-||+.-|..... ..-. .-.......+.++ +.|..|
T Consensus 110 ~~~kRv~Iq~-D~~~IDt~~I~~~~a~~~-----RWiL~s~GNg~~~--------E~~~-~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 110 SSVKRVPIQY-DGVKIDTMAIHQPEAKPQ-----RWILVSNGNGECY--------ENRA-MLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred cceeeEEEee-CCEEEEEEEeeCCCCCCC-----cEEEEEcCChHHh--------hhhh-hhccccHHHHHHHHHcCCcE
Confidence 3667777876 999999888774443333 3566666542110 0000 0000112344455 478888
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~-~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+.-||+ |.|.+..... .++.+.|..+.++||.++. -+.+++|+++|||.||.++..++...
T Consensus 175 l~fNYp---GVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LVFNYP---GVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EEECCC---ccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 886775 4555533333 5888999999999999754 37889999999999999988765543
No 284
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.40 E-value=0.015 Score=57.64 Aligned_cols=166 Identities=16% Similarity=0.064 Sum_probs=91.2
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc
Q 005240 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA 168 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~ 168 (706)
..++++|+||+.+++.... . ....|++...++..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~--~--------------------------------------------~~~~L~~~~~~~~~ 59 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG--D--------------------------------------------GGRSLYVGPAGGPV 59 (253)
T ss_pred ccceEECCCCCeEEEEEEc--C--------------------------------------------CCCEEEEEcCCCcc
Confidence 6789999999999988611 1 22688988887766
Q ss_pred eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcce
Q 005240 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 169 ~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
..+..+.....+.|+++|. +++....... ..+.....++.. ...+...... ..+..+
T Consensus 60 ~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~----------~~~~~~~~~g~~~~~~v~~~~~~-----------~~I~~l 117 (253)
T PF10647_consen 60 RPVLTGGSLTRPSWDPDGW-VWTVDDGSGG----------VRVVRDSASGTGEPVEVDWPGLR-----------GRITAL 117 (253)
T ss_pred eeeccCCccccccccCCCC-EEEEEcCCCc----------eEEEEecCCCcceeEEecccccC-----------CceEEE
Confidence 6655556788999999965 4444333211 122221222222 2222111110 014478
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-------ecccccccceecCCCceEEEEeecc
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
.+||||.+ ++++....++. .|++.-+.--..+.+..|. .....+..+.|++++..++......
T Consensus 118 ~vSpDG~R-vA~v~~~~~~~---------~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 118 RVSPDGTR-VAVVVEDGGGG---------RVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EECCCCcE-EEEEEecCCCC---------eEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 99999999 77775333222 2444433100233233332 2234667899999998776654322
Q ss_pred ccceEEEEEcCCCC
Q 005240 321 TSQTRTWLVCPGSK 334 (706)
Q Consensus 321 ~~~~~l~~~d~~~~ 334 (706)
..... .+..+++
T Consensus 188 -~~~~~-~v~~dG~ 199 (253)
T PF10647_consen 188 -GPVVR-LVSVDGG 199 (253)
T ss_pred -CceeE-EEEccCC
Confidence 22222 4666653
No 285
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.39 E-value=0.0051 Score=59.32 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=117.8
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
+-..+....|.|.|.+|+.. .....+.++|+++-+.-.-.. +.....+.+..+.+|+.|+. |.+...
T Consensus 215 d~~~vrsiSfHPsGefllvg----------TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~l-YvTaSk- 281 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVG----------TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSL-YVTASK- 281 (430)
T ss_pred ccceeeeEeecCCCceEEEe----------cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccE-EEEecc-
Confidence 33468889999999999875 345678888888766543222 33223334678899999985 444211
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC---ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP---AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~---~~~~~~~~S 183 (706)
.+.|-++|- .++. +.+... ..+.+..|+
T Consensus 282 -----------------------------------------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 282 -----------------------------------------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred -----------------------------------------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 145555554 4432 222222 578899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC-cccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP-VCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p-~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
.+||+|+-+..+ +.+.+|.+.++...+...+.+..+.- .....+-+....+...||...
T Consensus 315 kn~kyiLsSG~D-------------S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas------- 374 (430)
T KOG0640|consen 315 KNGKYILSSGKD-------------STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS------- 374 (430)
T ss_pred cCCeEEeecCCc-------------ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-------
Confidence 999999744433 47899999877654444444322110 000000011123334444332
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
..++.||. .++..+.|. .+.+.+..+.-||.+..++..++ +...+.|.-..
T Consensus 375 -------------~slcsWda---Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd--D~raRFWyrr~ 427 (430)
T KOG0640|consen 375 -------------NSLCSWDA---RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD--DFRARFWYRRV 427 (430)
T ss_pred -------------Cceeeccc---cchhhhhhcccCCCCCceEEEeCCCCCceeeecc--cceeeeeeecc
Confidence 13667777 455555543 34666667777898887776543 23456665543
No 286
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.39 E-value=0.003 Score=63.31 Aligned_cols=122 Identities=14% Similarity=0.149 Sum_probs=80.4
Q ss_pred EEEEcc-CCCc-eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcc
Q 005240 159 LVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 159 l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~ 236 (706)
|-.+|. .+.. +.+.-++.+.++..|+||..|...+ +. ..+-++|+.+.+++......+.....
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss-RD------------dtl~viDlRt~eI~~~~sA~g~k~as-- 388 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS-RD------------DTLKVIDLRTKEIRQTFSAEGFKCAS-- 388 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec-CC------------CceeeeecccccEEEEeecccccccc--
Confidence 555565 3333 3333347889999999999987553 32 36888999999888876665432111
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCCCceE
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDDSLAL 313 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspDg~~l 313 (706)
+ .....||||+.. ++ .++ ..+.||+|++ .+++.+..... +..+...+|.|-|..+
T Consensus 389 -----D-wtrvvfSpd~~Y-va-----AGS-------~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 389 -----D-WTRVVFSPDGSY-VA-----AGS-------ADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred -----c-cceeEECCCCce-ee-----ecc-------CCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 1 125689999986 32 111 1235999999 77877665432 2358899999999988
Q ss_pred EEEe
Q 005240 314 VNET 317 (706)
Q Consensus 314 ~~~~ 317 (706)
+..+
T Consensus 447 lsad 450 (459)
T KOG0288|consen 447 LSAD 450 (459)
T ss_pred hccc
Confidence 8654
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.38 E-value=0.071 Score=62.67 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=101.5
Q ss_pred ceEEEE----ccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCc-----cccc----ccc-cccceEEEEecC-CC
Q 005240 157 AQLVLG----SLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY-----SYKV----PCA-RFSQKVQVWTTD-GK 219 (706)
Q Consensus 157 ~~l~~~----~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~-----~~~~----~~~-~~~~~i~~~~~~-~~ 219 (706)
++|.++ +.+. ....+..- ..+.+++||||+..|++....+.- .+.+ +.. .....-.-+++. |+
T Consensus 97 Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 97 GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 677777 4432 44444333 578899999999999988765310 0000 000 000111122333 33
Q ss_pred eeEEcccCCCCC-----CCCc------ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC
Q 005240 220 LVRELCDLPPAE-----DIPV------CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (706)
Q Consensus 220 ~~~~l~~~~~~~-----~~p~------~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 288 (706)
+.++.-...+.. ..|. ...+..++.-.++|+.||.. ++......... .+..+.+++. +
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y-FAVss~~~~~~------~~R~iRVy~R---e- 245 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY-FAVSSVEPETG------SRRVIRVYSR---E- 245 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE-EEEEEEEcCCC------ceeEEEEECC---C-
Confidence 322221110000 0111 00111234458999999986 44322111111 1224777776 3
Q ss_pred CCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee-ecCcccccccCCCCCceEeccCCCE
Q 005240 289 EKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTN 366 (706)
Q Consensus 289 ~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~ 366 (706)
|+..... ..++-...++|.|.|..|+.... ......|..+..+|-....-.| ++.. ....-.+.|++|+..
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfErNGLrhgeF~l~~~~~------~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFERNGLRHGEFTLRFDPE------EEKVIELAWNSDSEI 318 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEecCCcEeeeEecCCCCC------CceeeEEEECCCCCE
Confidence 4443332 33566678899999998887653 3344556666555521110111 1000 011235889999999
Q ss_pred EEEeeeccCCcceEEEEec
Q 005240 367 VIAKIKKENDEQIYILLNG 385 (706)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~ 385 (706)
|++... +...+|..+
T Consensus 319 LAv~~~----~~vqLWt~~ 333 (928)
T PF04762_consen 319 LAVWLE----DRVQLWTRS 333 (928)
T ss_pred EEEEec----CCceEEEee
Confidence 988662 234455443
No 288
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0023 Score=63.02 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=127.3
Q ss_pred ceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-ceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~ 83 (706)
+|++.|..+ |+ ++-+++.... +..+.++..|+.||-.+. +-..+|| |.++- +..+...+.+.
T Consensus 131 tikv~D~~t----g~~e~~LrGHt~s--v~di~~~a~Gk~l~tcSs--------Dl~~~LW--d~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 131 TIKVFDTET----GELERSLRGHTDS--VFDISFDASGKYLATCSS--------DLSAKLW--DFDTFFRCIKSLIGHEH 194 (406)
T ss_pred eEEEEEccc----hhhhhhhhccccc--eeEEEEecCccEEEecCC--------ccchhhe--eHHHHHHHHHHhcCccc
Confidence 466677755 43 3445555555 888999999999988764 2224444 55442 22222222222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
+++.+.+-|-|.+|+..+.+ ..+..++
T Consensus 195 ----~vS~V~f~P~gd~ilS~srD-------------------------------------------------~tik~We 221 (406)
T KOG0295|consen 195 ----GVSSVFFLPLGDHILSCSRD-------------------------------------------------NTIKAWE 221 (406)
T ss_pred ----ceeeEEEEecCCeeeecccc-------------------------------------------------cceeEEe
Confidence 37888899999887765421 4567777
Q ss_pred c-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+ +| ....++.. .-+..++.+-||..|+--++. ..+.+|-+.+++-+.+....- .|
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE---h~------ 279 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE---HP------ 279 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc---cc------
Confidence 7 56 45555555 667888889999777644433 478888888764333322210 01
Q ss_pred CCCCcceeeecCCCce-EEEEEeccCCCCcccc-CccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEe
Q 005240 241 REGMRSISWRADKPST-LYWVEAQDRGDANVEV-SPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~-l~~~~~~~~~~~~~~~-~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
+.-++|.|..... +-......++.+.... .....|..||+ .++. +-.|..+..-+..++|+|.|++|+..+
T Consensus 280 ---vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv---~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 280 ---VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV---STGMCLFTLVGHDNWVRGVAFSPGGKYILSCA 353 (406)
T ss_pred ---eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec---cCCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence 2234555543210 0001000001111111 11235888888 4442 334556778899999999999999876
Q ss_pred eccccceEEEEEc
Q 005240 318 WYKTSQTRTWLVC 330 (706)
Q Consensus 318 ~~~~~~~~l~~~d 330 (706)
+++ ..++|-+.
T Consensus 354 DDk--tlrvwdl~ 364 (406)
T KOG0295|consen 354 DDK--TLRVWDLK 364 (406)
T ss_pred cCC--cEEEEEec
Confidence 433 44455443
No 289
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.34 E-value=0.0025 Score=58.82 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CCcc------------chHHHHHHH
Q 005240 599 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TPFG------------FQAERFFDA 654 (706)
Q Consensus 599 id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~~~------------~~~~~~~~~ 654 (706)
|+++||+|.|+|+||.++++++..+|-......+..+...... +|.. .-.++..+.
T Consensus 90 i~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~~~~~~i~~~Hg~~d~~vp~~~g~~s~~~ 169 (206)
T KOG2112|consen 90 IPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPGVNYTPILLCHGTADPLVPFRFGEKSAQF 169 (206)
T ss_pred CCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhccCCccccCcchhheecccCCceeehHHHHHHHHH
Confidence 7889999999999999999999999665666666665543110 1110 012377788
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 655 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 655 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
|+..+..+++..|+|.+|.... +.+..+..|+++
T Consensus 170 l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 170 LKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred HHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 8888888999999999998763 567788888877
No 290
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.33 E-value=0.0039 Score=61.71 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=84.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC----CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-c
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG----AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-E 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~ 79 (706)
-.|||+|+. ..+.+.++.+- ........++++.+|||=..+ ...+|.++|+.+-+..-.. .
T Consensus 106 e~IyIydI~------~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 106 ESIYIYDIK------DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred ccEEEEecc------cceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEe
Confidence 358999994 45555443322 235555666777799996542 3468888887654433222 2
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
+.+ .+..+++|+||..||-.+.. .+-|
T Consensus 172 H~~-----~lAalafs~~G~llATASeK------------------------------------------------GTVI 198 (391)
T KOG2110|consen 172 HKG-----PLAALAFSPDGTLLATASEK------------------------------------------------GTVI 198 (391)
T ss_pred cCC-----ceeEEEECCCCCEEEEeccC------------------------------------------------ceEE
Confidence 222 27788999999999976531 1233
Q ss_pred EEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 160 VLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 160 ~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
-++.+ +| +...+-.+ -.+..++||||++.|..+++.. .|.++-++.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 33444 55 34444333 4677999999999998877653 677776663
No 291
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.32 E-value=0.029 Score=61.10 Aligned_cols=212 Identities=9% Similarity=0.006 Sum_probs=105.7
Q ss_pred ccceeeC-----CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEE--ecCCcEEEEEe
Q 005240 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~S-----PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--SpDg~~l~~~~ 105 (706)
..+|..| .||++| |+-+ .....|-+++++.-+..+|+..+... ++....+ .|+-+++++..
T Consensus 127 ~HHp~~s~t~g~ydGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred cCCCcccccCCccceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeCc
Confidence 4456655 588888 5432 34567888888887777777555321 1222222 36666666542
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc-eecCCCceEeeeeeC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTPAVYTAVEPS 183 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~-~~lt~~~~~~~~~~S 183 (706)
.- +. +.-+.|..+.. .. .-.+-+-.+|.+. +. .++.-++......++
T Consensus 195 e~-~~-----PlpnDGk~l~~--------~~-----------------ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~s 243 (635)
T PRK02888 195 EF-RI-----PLPNDGKDLDD--------PK-----------------KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTD 243 (635)
T ss_pred cc-cc-----ccCCCCCEeec--------cc-----------------ceeEEEEEEECccceEEEEEEeCCCcccceEC
Confidence 10 00 00001110000 00 0124555666643 22 233223455678899
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|||+++++++.+... ...+...+............ ..--.+.+||+. .+ +.
T Consensus 244 pdGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni----------------~~iea~vkdGK~-~~-V~-- 294 (635)
T PRK02888 244 YDGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNI----------------ARIEEAVKAGKF-KT-IG-- 294 (635)
T ss_pred CCCCEEEEeccCccc---------CcceeeeccccCceEEEEch----------------HHHHHhhhCCCE-EE-EC--
Confidence 999999888743321 12333333321111110000 001145667775 33 21
Q ss_pred cCCCCccccCccceeeeecCCCCCC-----CCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEG-----EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+ +.+-++|. .. .+.............+..||||++++.... ....+-++|++.
T Consensus 295 --g---------n~V~VID~---~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k 352 (635)
T PRK02888 295 --G---------SKVPVVDG---RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRK 352 (635)
T ss_pred --C---------CEEEEEEC---CccccCCcceEEEEECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChh
Confidence 1 13556666 33 223333345666778899999999998642 233577788776
No 292
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.32 E-value=0.24 Score=54.69 Aligned_cols=218 Identities=13% Similarity=-0.001 Sum_probs=111.5
Q ss_pred ccceEEEEccC----CCceecCC----C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 155 TTAQLVLGSLD----GTAKDFGT----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 155 ~~~~l~~~~l~----g~~~~lt~----~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
+...++.++.. |+...-+. . ....+++.|+-|+..+..... ..|.+||++++-.+.-.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSF 486 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeeccc
Confidence 44677777772 22221111 2 467789999999988765544 37899999987655432
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccce
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS 305 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ 305 (706)
....+...+ + ...+-|+...+...... .+.+..||. ..+.+..-.........+.
T Consensus 487 ~~~~ah~~~---------V--~gla~D~~n~~~vsa~~-----------~Gilkfw~f---~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 487 GDSPAHKGE---------V--TGLAVDGTNRLLVSAGA-----------DGILKFWDF---KKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred ccCccccCc---------e--eEEEecCCCceEEEccC-----------cceEEEEec---CCcceeeeeccCCCcceee
Confidence 211111111 1 12344443323322111 123555555 2222110011111222222
Q ss_pred ecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEec
Q 005240 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (706)
Q Consensus 306 wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (706)
.+-....++..- ....|.++|..+.+ -.+.+ .+. +.....+.+||||+||+...-+
T Consensus 542 ~hr~s~l~a~~~----ddf~I~vvD~~t~k-vvR~f-~gh------~nritd~~FS~DgrWlisasmD------------ 597 (910)
T KOG1539|consen 542 YHRVSDLLAIAL----DDFSIRVVDVVTRK-VVREF-WGH------GNRITDMTFSPDGRWLISASMD------------ 597 (910)
T ss_pred eeehhhhhhhhc----CceeEEEEEchhhh-hhHHh-hcc------ccceeeeEeCCCCcEEEEeecC------------
Confidence 222222222211 33458888877732 12222 211 1123347889999999887521
Q ss_pred CCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 386 RGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
..+..+|+.+|...-....+ ....+.+|||+|..|+.++.+-+ .||+|.
T Consensus 598 ---------~tIr~wDlpt~~lID~~~vd------------~~~~sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 598 ---------STIRTWDLPTGTLIDGLLVD------------SPCTSLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred ---------CcEEEEeccCcceeeeEecC------------CcceeeEECCCCCEEEEEEecCc---eEEEEE
Confidence 14667888887642222221 12336799999999998887643 488885
No 293
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.30 E-value=0.0063 Score=63.11 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=37.7
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+.+..+.|||||++|+..+. ++..+|+-+| + .+.+-+.+--+. |-.-+.|||||++|+..-
T Consensus 290 ~g~in~f~FS~DG~~LA~VSq--DGfLRvF~fd--t--~eLlg~mkSYFG------GLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQ--DGFLRIFDFD--T--QELLGVMKSYFG------GLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccccceeEcCCCceEEEEec--CceEEEeecc--H--HHHHHHHHhhcc------ceEEEEEcCCccEEEecC
Confidence 447788999999999998862 2455555554 3 111111111111 122377999999998753
No 294
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.02 Score=55.98 Aligned_cols=58 Identities=5% Similarity=0.072 Sum_probs=37.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~ 102 (706)
.++..+|.||.+.|+.+. +....|+.++.+|.-.+++...... .+..+++..+|++++
T Consensus 23 e~SGLTy~pd~~tLfaV~---------d~~~~i~els~~G~vlr~i~l~g~~----D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQ---------DEPGEIYELSLDGKVLRRIPLDGFG----DYEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEE---------TTTTEEEEEETT--EEEEEE-SS-S----SEEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEE---------CCCCEEEEEcCCCCEEEEEeCCCCC----CceeEEEECCCEEEE
Confidence 389999999999997765 4567899999876656666433211 166788887776433
No 295
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.27 E-value=0.0031 Score=63.15 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|..+|..++..++-....+. +.++..++||..|...+++
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLsssRD---------------------------------- 362 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLSSSRD---------------------------------- 362 (459)
T ss_pred cceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEeeecCC----------------------------------
Confidence 3477778777766655433333 7889999999776544321
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-CceecCC-C-----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~-~-----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
..|-++|+.+ +.+.... . .+.+...|||||.|++-.+.++ .+++|
T Consensus 363 ---------------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-------------sv~iW 414 (459)
T KOG0288|consen 363 ---------------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-------------SVYIW 414 (459)
T ss_pred ---------------CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC-------------cEEEE
Confidence 3455666644 4433321 1 3567889999999998766553 79999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
++.+++........... .++..++|+|-|+.
T Consensus 415 ~v~tgKlE~~l~~s~s~----------~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSN----------AAITSLSWNPSGSG 445 (459)
T ss_pred EccCceEEEEeccCCCC----------cceEEEEEcCCCch
Confidence 99988877665554332 13457899999987
No 296
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.27 E-value=0.00079 Score=52.95 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 571 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~ 571 (706)
|.+|....+.|++- +..+|+++||-. ........+++.|+++||.|+..+. +|+|+
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~~D~---rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFAYDH---RGHGR 56 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEEECC---CcCCC
Confidence 56889999999761 358999999942 1222233567889999999999444 46666
Q ss_pred CCCc---hhhHHHHHHHHHHHH
Q 005240 572 KLPN---DRFVEQLVSSAEAAV 590 (706)
Q Consensus 572 ~~~~---~~~~~~~~~D~~~~~ 590 (706)
+... ....+..++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 6542 234556777777654
No 297
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.26 E-value=0.003 Score=75.76 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PH 625 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~ 625 (706)
+...|+++||.|+.++. |..+...... .....+.+..+.++++.+.+.. .+++-++|+||||.+++.+++.+ ++
T Consensus 91 ~v~~L~~~g~~v~~~d~-G~~~~~~~~~-~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~ 165 (994)
T PRK07868 91 AVGILHRAGLDPWVIDF-GSPDKVEGGM-ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSK 165 (994)
T ss_pred HHHHHHHCCCEEEEEcC-CCCChhHcCc-cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCC
Confidence 45778899999998763 3322111111 1122334455666666665543 25799999999999998887644 55
Q ss_pred ceeEEEeccCC
Q 005240 626 LFCCGIARSGS 636 (706)
Q Consensus 626 ~~~a~v~~~~~ 636 (706)
+++.++.++..
T Consensus 166 ~v~~lvl~~~~ 176 (994)
T PRK07868 166 DIASIVTFGSP 176 (994)
T ss_pred ccceEEEEecc
Confidence 89988875544
No 298
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.26 E-value=0.0027 Score=68.48 Aligned_cols=90 Identities=13% Similarity=-0.003 Sum_probs=63.4
Q ss_pred chHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH----HH
Q 005240 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LL 620 (706)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~----~~ 620 (706)
..+.+.|+++||.|+..+-+. .+ .+.+.. .+++.+..+.+|++.+.+. ....+|-++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~n-P~--~~~r~~-~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRN-PD--KAHREW-GLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCC-CC--hhhcCC-CHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHH
Confidence 457788999999998844321 12 121211 1233345778888888775 34578999999999999997 67
Q ss_pred HhCCC-ceeEEEeccCCCCCC
Q 005240 621 AHAPH-LFCCGIARSGSYNKT 640 (706)
Q Consensus 621 ~~~p~-~~~a~v~~~~~~d~~ 640 (706)
+++++ +++.++.++...|..
T Consensus 311 A~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred hcCCCCceeeEEeeecccccC
Confidence 77775 799999888877743
No 299
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.023 Score=53.24 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=124.1
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
.|+|-.+.. .++...+..|.... .+..+.|-. -|..||-.+ +..++.++.-++|.-.++.....
T Consensus 34 tVkIf~v~~---n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs----------YDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 34 TVKIFEVRN---NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS----------YDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred cEEEEEEcC---CCCceeeeEecCCCCCeeEEeecccccCcEeeEee----------cCceEEEEecCCCchhhhhhhhh
Confidence 355555544 23345554454433 577777876 888888764 33567777777776555543222
Q ss_pred ccccccccceEEecCC--cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 83 ICLNAVFGSFVWVNNS--TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
....+.+++|.|.+ -.|++.+.+ +.-.|.
T Consensus 101 --h~~SVNsV~wapheygl~LacasSD-----------------------------------------------G~vsvl 131 (299)
T KOG1332|consen 101 --HSASVNSVAWAPHEYGLLLACASSD-----------------------------------------------GKVSVL 131 (299)
T ss_pred --hcccceeecccccccceEEEEeeCC-----------------------------------------------CcEEEE
Confidence 12337788888866 346665432 113445
Q ss_pred EEccCC--CceecCCC--ceEeeeeeCCC---CcEEEEEeeccCcccccccccccceEEEEecCCC---eeEEcccCCCC
Q 005240 161 LGSLDG--TAKDFGTP--AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK---LVRELCDLPPA 230 (706)
Q Consensus 161 ~~~l~g--~~~~lt~~--~~~~~~~~SpD---G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~~ 230 (706)
.++-+| ...++... -.+.++.|+|- |..+ ........+....+.-.+.+.+|..+.. ..+.|..+.
T Consensus 132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~--~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~-- 207 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV--DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK-- 207 (299)
T ss_pred EEcCCCCccchhhhhccccccceeeecCcCCCcccc--ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc--
Confidence 555553 33444333 45678888886 5211 1111000000000111256777777753 222233222
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC--CceEEeecccccccceecC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~wsp 308 (706)
+-+|+.+|.|.-......++ .-..+.. -.||..+. +.+ +.+.|...+..+..+.||.
T Consensus 208 -----------dwVRDVAwaP~~gl~~s~iA-S~SqDg~------viIwt~~~---e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 208 -----------DWVRDVAWAPSVGLPKSTIA-SCSQDGT------VIIWTKDE---EYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred -----------hhhhhhhhccccCCCceeeE-EecCCCc------EEEEEecC---ccCcccccccccCCcceEEEEEec
Confidence 33678889887532122221 1111111 13455443 333 2344556677889999999
Q ss_pred CCceEEEEeeccccceEEEEEcCCC
Q 005240 309 DSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
-|..|+... .+....||+=++++
T Consensus 267 sGn~LaVs~--GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 267 SGNILAVSG--GDNKVTLWKENVDG 289 (299)
T ss_pred cccEEEEec--CCcEEEEEEeCCCC
Confidence 999888753 33455677767665
No 300
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.24 E-value=0.0029 Score=62.74 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
+....+++.-..+++..++++||++. ..+...+.+.+.+|+.++
T Consensus 270 ~~~~~~~~~fp~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 270 EHYPRMEKIFPNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred hHHHHHHHhccchheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 55666666656689999999999987 456788999999988764
No 301
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=97.24 E-value=0.00042 Score=71.20 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=83.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC-CeEEEEcCCC-CcC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSI-PII 567 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~-~~~ 567 (706)
+|..-+. ++.|. .++.. .-++|++|||++-+|.+...+.++ ..|++. ..+|+..||| |--
T Consensus 118 EDCLYlN--VW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~F 179 (601)
T KOG4389|consen 118 EDCLYLN--VWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAF 179 (601)
T ss_pred hhceEEE--EeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccc
Confidence 4554444 66673 23332 359999999999877766666543 445654 4555666766 332
Q ss_pred CCCCCCC---chhhHHHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 568 GEGDKLP---NDRFVEQLVSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
|+ -+. .+.-++--+-|+.=|++|+.+.- + -||+||.++|-|.|+..+.+-+..- -..|+-+|+.+|..+
T Consensus 180 GF--L~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 180 GF--LYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred eE--EecCCCCCCCCccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 32 211 12233444678888999999862 2 6999999999999987654433221 137999999998876
No 302
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.17 E-value=0.016 Score=63.44 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=105.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC-cEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-TLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg-~~l~~~~~~~~~ 110 (706)
.+-++.||.++-.| -++ + +....|| .+...+...+..+.. .|..++|.|-. ++++..+-+
T Consensus 371 DILDlSWSKn~fLL-SSS-M-------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiSGSLD--- 431 (712)
T KOG0283|consen 371 DILDLSWSKNNFLL-SSS-M-------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDRYFISGSLD--- 431 (712)
T ss_pred hheecccccCCeeE-ecc-c-------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCCcEeecccc---
Confidence 57788999876433 322 2 4445555 556777777765554 27899999944 543332210
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|-+|++ +-++.-.++- ..+++++++|||+.
T Consensus 432 ----------------------------------------------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 432 ----------------------------------------------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ----------------------------------------------cceEEeecCcCeeEeehhhhhhheeEEeccCCce
Confidence 23333455 2244444444 57889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
.++.+..+ ..++|+..+-+...=.......+. ....+ +..|.+.|-....|.++++
T Consensus 466 avIGt~~G-------------~C~fY~t~~lk~~~~~~I~~~~~K-----k~~~~rITG~Q~~p~~~~~vLVTSn----- 522 (712)
T KOG0283|consen 466 AVIGTFNG-------------YCRFYDTEGLKLVSDFHIRLHNKK-----KKQGKRITGLQFFPGDPDEVLVTSN----- 522 (712)
T ss_pred EEEEEecc-------------EEEEEEccCCeEEEeeeEeeccCc-----cccCceeeeeEecCCCCCeEEEecC-----
Confidence 98877664 455566554443221111000000 00011 2356666654433444432
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+|.++|. ...++...... ...-....|+.||++|++++++ . .+|+++.+.
T Consensus 523 -------DSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD--s--~VYiW~~~~ 577 (712)
T KOG0283|consen 523 -------DSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED--S--WVYIWKNDS 577 (712)
T ss_pred -------CCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecC--c--eEEEEeCCC
Confidence 124666665 22222222221 1222456799999999998722 2 355555443
No 303
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0053 Score=61.82 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=80.9
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-ecccCCCccccccccceEEecCC--cEEEEEec
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNS--TLLIFTIP 106 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wSpDg--~~l~~~~~ 106 (706)
...+.+..|||||+.|+++.. + ...++++.+|... ..|.... +..+..+.|+-|+ ..|+....
T Consensus 186 ~~eV~DL~FS~dgk~lasig~--------d---~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~ 251 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA--------D---SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAAS 251 (398)
T ss_pred cCccccceeCCCCcEEEEecC--------C---ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEe
Confidence 347888999999999999753 2 5555666666432 2331111 2236688898776 23333221
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpD 185 (706)
..... .+ . . -...+|..+--++.++.... ..+++++.|+|
T Consensus 252 ~~~~~-----------~v---------~--~-----------------~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 252 QFPGG-----------GV---------R--L-----------------CDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred cCCCC-----------ce---------e--E-----------------EEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 11110 00 0 0 00122222211133444333 57899999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
|+.++..+..+ .+-++++..-+..++.... .. .-+..+.|+||.+.
T Consensus 293 Gkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~a--H~---------~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 293 GKFLALGTMDG-------------SVAIYDAKSLQRLQYVKEA--HL---------GFVTGLTFSPDSRY 338 (398)
T ss_pred CcEEEEeccCC-------------cEEEEEeceeeeeEeehhh--he---------eeeeeEEEcCCcCc
Confidence 99999888753 5667766544333322211 10 01337799999886
No 304
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.14 E-value=0.027 Score=57.04 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=71.2
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
.+++.+|.||| ++|..... ...+.+||+.... .++..++. ..| +..++||.+|-+
T Consensus 349 ~~ts~~fHpDg--Lifgtgt~-----------d~~vkiwdlks~~--~~a~Fpgh-t~~---------vk~i~FsENGY~ 403 (506)
T KOG0289|consen 349 EYTSAAFHPDG--LIFGTGTP-----------DGVVKIWDLKSQT--NVAKFPGH-TGP---------VKAISFSENGYW 403 (506)
T ss_pred eeEEeeEcCCc--eEEeccCC-----------CceEEEEEcCCcc--ccccCCCC-CCc---------eeEEEeccCceE
Confidence 57789999999 44443322 2489999998554 44555442 222 558899999965
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|+..++ .+.+++||+. .....+.+. .....+..+.|-+-|++++... ...++|.++-.+
T Consensus 404 -Lat~ad------------d~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 404 -LATAAD------------DGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVYICKKKT 463 (506)
T ss_pred -EEEEec------------CCeEEEEEeh--hhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEEEEeccc
Confidence 554321 1237889883 222333333 2234577888888899888652 455688887555
No 305
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.14 E-value=0.013 Score=63.06 Aligned_cols=163 Identities=10% Similarity=0.081 Sum_probs=91.2
Q ss_pred ceEEEEcc-CCCce-ecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DGTAK-DFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~~~-~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..|..+|+ +|+.. +.... ..+..++++||+++|+..... ..+.+|.++.++..+......
T Consensus 40 d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs-------------~llrv~~L~tgk~irswKa~H-- 104 (775)
T KOG0319|consen 40 DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS-------------QLLRVWSLPTGKLIRSWKAIH-- 104 (775)
T ss_pred ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeecc-------------ceEEEEEcccchHhHhHhhcc--
Confidence 45666777 55432 11111 467899999999888765543 478899999775544433211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg 310 (706)
..| +....+.|.| . |.-. .+.+ +.+.+||. .++.. ..+...++.+..+.|.|+-
T Consensus 105 e~P---------vi~ma~~~~g-~-LlAt---ggaD--------~~v~VWdi---~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 105 EAP---------VITMAFDPTG-T-LLAT---GGAD--------GRVKVWDI---KNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred CCC---------eEEEEEcCCC-c-eEEe---cccc--------ceEEEEEe---eCCEEEEEecCCCceEEEEEeCCcc
Confidence 122 2256788888 4 3312 1212 24778888 44443 3455668889999999995
Q ss_pred ce-EEEEeeccccceEEEEEcCCCCCCCc-eeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 311 LA-LVNETWYKTSQTRTWLVCPGSKDVAP-RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 311 ~~-l~~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
.+ +++.. . ....++.+|+... .+ ..+...... ....+.+++|+..++..
T Consensus 160 ~~~lL~sg-~--~D~~v~vwnl~~~--~tcl~~~~~H~S------~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 160 NRWLLASG-A--TDGTVRVWNLNDK--RTCLHTMILHKS------AVTSLAFSEDSLELLSV 210 (775)
T ss_pred chhheeec-C--CCceEEEEEcccC--chHHHHHHhhhh------heeeeeeccCCceEEEe
Confidence 44 43332 2 2345666776652 22 111111111 12236678887766554
No 306
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.098 Score=49.53 Aligned_cols=206 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.-..++||| =-.+||.+..... .-.|...|+++++..++-.+.. ... .+.+.-+++||+.-+-++++..
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~y---Gl~G~G~L~ile~~~~~gi~e~~s~d---~~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHY---GLAGNGRLFILEVTDPKGIQECQSYD---TEDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccchhheeehhhc---ccccCceEEEEecCCCCCeEEEEeee---cccceeEeeecCCCcceEEEEe---
Confidence 355788999 3344544432111 1146789999998643322221 111 1223567899988776555432
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--C-ceecCCC-ceEeeeeeCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--T-AKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~-~~~lt~~-~~~~~~~~SpD 185 (706)
+.+.|-++|+.- . ...+.+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 114555556532 2 2233344 67889999998
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
-++++.++.= ...|.+|+.+ ...+++..... .-++...|||.-.. |+ .+ .
T Consensus 116 ~r~~~ltsSW------------D~TiKLW~~~r~~Sv~Tf~gh~-------------~~Iy~a~~sp~~~n-lf-as--~ 166 (311)
T KOG0277|consen 116 RRRIFLTSSW------------DGTIKLWDPNRPNSVQTFNGHN-------------SCIYQAAFSPHIPN-LF-AS--A 166 (311)
T ss_pred cceeEEeecc------------CCceEeecCCCCcceEeecCCc-------------cEEEEEecCCCCCC-eE-EE--c
Confidence 8888777632 2478889887 33334322211 12446689987766 33 21 1
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.++. .+.+||++ ..|+...+..+...+-.-.|+.-...++++.. ...-|+.+|+..
T Consensus 167 Sgd~--------~l~lwdvr--~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~ 222 (311)
T KOG0277|consen 167 SGDG--------TLRLWDVR--SPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRN 222 (311)
T ss_pred cCCc--------eEEEEEec--CCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhh
Confidence 2222 46677774 34565557766777777889988777777642 223466667665
No 307
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.094 Score=55.55 Aligned_cols=207 Identities=13% Similarity=0.048 Sum_probs=123.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.......+|+|++++ ..+ .....+.++|.++.+...-..... ....++++||++.+|..-...
T Consensus 75 ~p~~i~v~~~~~~vy-v~~--------~~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~--- 137 (381)
T COG3391 75 YPAGVAVNPAGNKVY-VTT--------GDSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN--- 137 (381)
T ss_pred cccceeeCCCCCeEE-Eec--------CCCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc---
Confidence 345678899999884 433 224678888866554333221111 256889999999888763210
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCCceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i 189 (706)
....++++|. ++.. ..+..+.....++++|+|+++
T Consensus 138 -------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v 174 (381)
T COG3391 138 -------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV 174 (381)
T ss_pred -------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE
Confidence 1156777777 3332 223322334788999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+..... ...|.+++..+..+.+ ....... ....+++.+.++|||+. +|... ....
T Consensus 175 yv~~~~------------~~~v~vi~~~~~~v~~-~~~~~~~-------~~~~~P~~i~v~~~g~~-~yV~~-~~~~--- 229 (381)
T COG3391 175 YVTNSD------------DNTVSVIDTSGNSVVR-GSVGSLV-------GVGTGPAGIAVDPDGNR-VYVAN-DGSG--- 229 (381)
T ss_pred EEEecC------------CCeEEEEeCCCcceec-ccccccc-------ccCCCCceEEECCCCCE-EEEEe-ccCC---
Confidence 877633 3578889977766554 2211110 00133567899999997 55442 2211
Q ss_pred cccCccceeeeecCCCCCCCCceEEe-eccc-ccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILH-KLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...+..+|. .++...... .... .......+|+|+.++..... ...++.+|..+.
T Consensus 230 -----~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~ 285 (381)
T COG3391 230 -----SNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATD 285 (381)
T ss_pred -----CceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 124677776 444444431 1111 45567899999988876432 456888887774
No 308
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.09 E-value=0.053 Score=55.33 Aligned_cols=231 Identities=15% Similarity=0.213 Sum_probs=127.5
Q ss_pred cccceeEeecCCCCCCCCee-------eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--
Q 005240 3 FFTGIGIHRLLPDDSLGPEK-------EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-- 73 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~-------~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-- 73 (706)
.-.+|+|.|.+......++. .|++... ......|++.-+--..+.. .+....+|-++..+.+
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~~-------~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSGS-------DDHTICLWDINAESKEDK 215 (422)
T ss_pred CCCCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeecc-------CCCcEEEEeccccccCCc
Confidence 34567888877633222222 3443333 2455889986665544332 1445556655543332
Q ss_pred ---eeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhh
Q 005240 74 ---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (706)
Q Consensus 74 ---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (706)
++.++.+.. ..+.+.+|+|-.+.|+....
T Consensus 216 ~~~p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~-------------------------------------------- 247 (422)
T KOG0264|consen 216 VVDPKTIFSGHE----DVVEDVAWHPLHEDLFGSVG-------------------------------------------- 247 (422)
T ss_pred cccceEEeecCC----cceehhhccccchhhheeec--------------------------------------------
Confidence 122222222 23778899987765543321
Q ss_pred hhhcccceEEEEcc-CC--CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 151 FDYYTTAQLVLGSL-DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 151 ~~~~~~~~l~~~~l-~g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
....|.++|+ .+ +++..... +.+.+++|+|=+..|+.+.... ..|.+||+-.-.. .|-
T Consensus 248 ----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D------------~tV~LwDlRnL~~-~lh 310 (422)
T KOG0264|consen 248 ----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD------------KTVALWDLRNLNK-PLH 310 (422)
T ss_pred ----CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC------------CcEEEeechhccc-Cce
Confidence 1156777787 33 33333333 6788999999888887665432 4899999863222 121
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCC---------CCCCCCceEEee
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE---------PAEGEKPEILHK 296 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---------~~~~~~~~~l~~ 296 (706)
...+.+ ..+..+.|||+... +.-. .+.+. ++.+||+. ..+.+.++.|+-
T Consensus 311 ~~e~H~----------dev~~V~WSPh~et-vLAS---Sg~D~--------rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 311 TFEGHE----------DEVFQVEWSPHNET-VLAS---SGTDR--------RLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred eccCCC----------cceEEEEeCCCCCc-eeEe---cccCC--------cEEEEeccccccccChhhhccCCcceeEE
Confidence 122111 22457899999987 3322 33333 24455552 012233444543
Q ss_pred c---ccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 297 L---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 297 ~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
+ ...+.++.|.|+--+++....++ +..+||.+.
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeD-N~LqIW~~s 404 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAED-NILQIWQMA 404 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCC-ceEEEeecc
Confidence 3 55688999999988877665333 566777764
No 309
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.03 E-value=0.075 Score=53.34 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=84.6
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+.-+.|.|-..-+++++.. .+.+.+||+++++. -.|. ++ +-+.+++|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 356678899998888777654 25899999997653 3332 22 225578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ec-ccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
.. |+-.. .+ ..|.++|. ..+++..-- .+ ......+.|..+|+ |+.+.-.+....++-++|.
T Consensus 186 s~-l~Ttc-kD-----------KkvRv~dp---r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 186 SL-LCTTC-KD-----------KKVRVIDP---RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ce-eeeec-cc-----------ceeEEEcC---CCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCc
Confidence 86 54331 11 13667776 344433221 22 33455677999998 4433222223344555565
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
+.- .+|..+.+-+ .+.|...+-+.+|.+.||..-.
T Consensus 249 ~nl-~eP~~~~elD-----tSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 249 NNL-EEPIALQELD-----TSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred ccc-cCcceeEEec-----cCCceEEeeecCCCCEEEEEec
Confidence 543 2343333222 1234444556788877776653
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.01 E-value=0.028 Score=61.22 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=74.9
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecC--CCCCC
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS--SRRDP 112 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~--~~~~~ 112 (706)
+-++|||+.|.-.+ ....-+-++|.++.+. .++.- +.+ .....++|||+++++++.. .....
T Consensus 198 ~PlpnDGk~l~~~~---------ey~~~vSvID~etmeV~~qV~V-dgn-----pd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLDDPK---------KYRSLFTAVDAETMEVAWQVMV-DGN-----LDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEeeccc---------ceeEEEEEEECccceEEEEEEe-CCC-----cccceECCCCCEEEEeccCcccCcce
Confidence 44788888763221 4456677889887554 33321 222 5678999999998887521 11111
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-C----C-C-ceecCCCceEeeeeeCCC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~----g-~-~~~lt~~~~~~~~~~SpD 185 (706)
......+....+.. .+........+++ +.+.....+-++|. + + + ...+..+.....+.+|||
T Consensus 263 ~em~a~e~d~~vvf----------ni~~iea~vkdGK-~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEMMAAERDWVVVF----------NIARIEEAVKAGK-FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eeeccccCceEEEE----------chHHHHHhhhCCC-EEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 00000000000000 0000000011111 11112356777777 4 2 2 233444467789999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
|++|+.+.... ..+-++|+..
T Consensus 332 GkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChh
Confidence 99998776543 4677888764
No 311
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.00 E-value=0.049 Score=50.87 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=80.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+.+..+.+.-||++.+--... ..+.+|++-.+..-+-..+.+.+ +.+.+-+.|..
T Consensus 18 gaV~avryN~dGnY~ltcGsd-------------rtvrLWNp~rg~liktYsghG~E------------VlD~~~s~Dns 72 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD-------------RTVRLWNPLRGALIKTYSGHGHE------------VLDAALSSDNS 72 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC-------------ceEEeecccccceeeeecCCCce------------eeecccccccc
Confidence 567788999999998644333 47899998855444434444332 34556666766
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+ ++ .-+++. .+++||+ .+|+. +++-.+...+..+.|..+...++..+.+ ...++| |-.+
T Consensus 73 k-f~----s~GgDk--------~v~vwDV---~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD--~s~r~w--DCRS 132 (307)
T KOG0316|consen 73 K-FA----SCGGDK--------AVQVWDV---NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD--SSVRLW--DCRS 132 (307)
T ss_pred c-cc----cCCCCc--------eEEEEEc---ccCeeeeecccccceeeEEEecCcceEEEecccc--ceeEEE--Eccc
Confidence 5 32 123333 3789999 66765 4556778899999999888877655422 334444 4444
Q ss_pred CCCCceeeecCc
Q 005240 334 KDVAPRVLFDRV 345 (706)
Q Consensus 334 ~~~~~~~l~~~~ 345 (706)
...+|.++++..
T Consensus 133 ~s~ePiQildea 144 (307)
T KOG0316|consen 133 RSFEPIQILDEA 144 (307)
T ss_pred CCCCccchhhhh
Confidence 446778776543
No 312
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.031 Score=52.74 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=121.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+|.+++. . +..+...++........++||+.-..++++.. ++|.-+|| | .+....+|-...++
T Consensus 39 ~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-------GDGSLrl~--d-~~~~s~Pi~~~kEH-- 103 (311)
T KOG0277|consen 39 RLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAAS-------GDGSLRLF--D-LTMPSKPIHKFKEH-- 103 (311)
T ss_pred eEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEEe-------cCceEEEe--c-cCCCCcchhHHHhh--
Confidence 577888853 1 33333444444445788999999999999874 25555555 4 23333344322222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+-++.|.+--+..+.++. - .+.|.+++.+
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsS---W---------------------------------------------D~TiKLW~~~ 135 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSS---W---------------------------------------------DGTIKLWDPN 135 (311)
T ss_pred hhheEEeccccccceeEEeec---c---------------------------------------------CCceEeecCC
Confidence 123668889876655555431 0 0334444442
Q ss_pred --CCceecCCC-ceEeeeeeCCCCc-EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCcc
Q 005240 166 --GTAKDFGTP-AVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 166 --g~~~~lt~~-~~~~~~~~SpDG~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
..++..... ..+....|||--. .++..+.+ ..+.+||+. .++...+..+..
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i~ah~~----------- 191 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSIEAHNS----------- 191 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEEEeccc-----------
Confidence 233333333 5677889999554 44444433 367788877 222222333321
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
..-...|+.-... ++++... ...|+.||+.-+. -.+-.|..+...+..+.|||-...|+...+++
T Consensus 192 --Eil~cdw~ky~~~-vl~Tg~v-----------d~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 192 --EILCCDWSKYNHN-VLATGGV-----------DNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred --eeEeecccccCCc-EEEecCC-----------CceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence 1225578877666 4433211 1258888883211 11223445677889999999977776555454
Q ss_pred ccceEEEEEc
Q 005240 321 TSQTRTWLVC 330 (706)
Q Consensus 321 ~~~~~l~~~d 330 (706)
-..+||..-
T Consensus 257 -mT~riw~~~ 265 (311)
T KOG0277|consen 257 -MTVRIWDPE 265 (311)
T ss_pred -ceEEecccc
Confidence 344555543
No 313
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.98 E-value=0.12 Score=55.67 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.0
Q ss_pred ceeeeecCCCCCCC-CceEEeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 276 DIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 276 ~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
..|++|+. .+- +...|..++..+..+.|||||++|+..+.+ +.-.||..
T Consensus 552 AvI~lw~t---~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~ 601 (764)
T KOG1063|consen 552 AVIRLWNT---ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--RTVSLYEV 601 (764)
T ss_pred eEEEEEec---cchhhhheecccceEEEEEEECCCCcEEEEeecC--ceEEeeee
Confidence 35788876 332 334577788889999999999999987633 44557766
No 314
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.97 E-value=0.0065 Score=57.68 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHc-C--CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 583 VSSAEAAVEEVVRR-G--VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 583 ~~D~~~~~~~l~~~-~--~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
..|+...++.+..+ . +.| ...+++||||||.+|..++.+.
T Consensus 53 ~~di~~Lad~la~el~~~~~d-~P~alfGHSmGa~lAfEvArrl 95 (244)
T COG3208 53 LTDIESLADELANELLPPLLD-APFALFGHSMGAMLAFEVARRL 95 (244)
T ss_pred cccHHHHHHHHHHHhccccCC-CCeeecccchhHHHHHHHHHHH
Confidence 45555666655553 1 233 5799999999999999988654
No 315
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.97 E-value=0.026 Score=49.39 Aligned_cols=140 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHHCCeEEEE--cCCCCcCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 547 SSLIFLARRFAVLA--GPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 547 ~~~~l~~~G~~v~~--~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+..|+.+|+.|.. -.|+..+..|..-... ...+.. -+.++..|.+. .+..++++.|+||||-++.+++..
T Consensus 35 ~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~---~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade 109 (213)
T COG3571 35 VAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPE---YIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADE 109 (213)
T ss_pred HHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHH---HHHHHHHHHhc--ccCCceeeccccccchHHHHHHHh
Confidence 45678889999864 2333333333221111 111111 11222234333 456789999999999999998854
Q ss_pred CCCceeEEEecc-CCCCCC-------------CCCccc-h--------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcc-
Q 005240 623 APHLFCCGIARS-GSYNKT-------------LTPFGF-Q--------AERFFDALKGHGALSRLVLLPFEHHVYAARE- 678 (706)
Q Consensus 623 ~p~~~~a~v~~~-~~~d~~-------------~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~- 678 (706)
---.+.+++++. |++..- -+|..+ | .+++..... .-+.+++.+.++.|..-..+
T Consensus 110 ~~A~i~~L~clgYPfhppGKPe~~Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y~l--s~~iev~wl~~adHDLkp~k~ 187 (213)
T COG3571 110 LQAPIDGLVCLGYPFHPPGKPEQLRTEHLTGLKTPTLITQGTRDEFGTRDEVAGYAL--SDPIEVVWLEDADHDLKPRKL 187 (213)
T ss_pred hcCCcceEEEecCccCCCCCcccchhhhccCCCCCeEEeecccccccCHHHHHhhhc--CCceEEEEeccCccccccccc
Confidence 322355555443 433200 012111 1 124433322 34789999999999764221
Q ss_pred --------cHHHHHHHHHHHHHH
Q 005240 679 --------NVMHVIWETDRWLQK 693 (706)
Q Consensus 679 --------~~~~~~~~~~~f~~~ 693 (706)
+.....+.+..|..+
T Consensus 188 vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 188 VSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cccccHHHHHHHHHHHHHHHHhh
Confidence 123445556666655
No 316
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.011 Score=66.99 Aligned_cols=152 Identities=12% Similarity=0.168 Sum_probs=78.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+.+..+.|.|.+.-++-+... ..+|++||++.-+ ...+.+ ...+ ...+..++|...-.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~---~~~~------~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG---SQAP------PSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC---CCCC------cccceEeccchhhh
Confidence 678889999988744333322 2489999998421 111111 0000 02234566654433
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeec--ccccccceecCCC-ceEEEEeeccccceEEEEEc
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKL--DLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~--~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d 330 (706)
+ |. .+ ...++...+||+ ...+ +-.+... ......+.|.||+ .+|+..+ ++++...|-+.|
T Consensus 175 h-IL-AS----------~s~sg~~~iWDl---r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~PviqlWD 238 (1049)
T KOG0307|consen 175 H-IL-AS----------GSPSGRAVIWDL---RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSAPVIQLWD 238 (1049)
T ss_pred H-Hh-hc----------cCCCCCceeccc---cCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCCceeEeec
Confidence 3 11 11 112234667787 2222 2223322 2457789999996 4555554 334455566666
Q ss_pred CCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+.-.. .+..++.. +..|...+.|++.+..++++.
T Consensus 239 lR~as-sP~k~~~~------H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 239 LRFAS-SPLKILEG------HQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred ccccC-Cchhhhcc------cccceeeeccCCCCchhhhcc
Confidence 54432 23333221 122455678998887666654
No 317
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.96 E-value=0.0014 Score=43.67 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=27.3
Q ss_pred eEEeecccccccceecCCCceEEEEeecc-ccceEEEE
Q 005240 292 EILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (706)
Q Consensus 292 ~~l~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~l~~ 328 (706)
++++........|.|||||++|+|.+... .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 56777778889999999999999998654 25666774
No 318
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.95 E-value=0.023 Score=59.12 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=23.7
Q ss_pred ceEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEe
Q 005240 157 AQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~ 193 (706)
+-|-+++.+. +..-+... +....++||||||+|+...
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 4555556644 33333222 5678999999999998544
No 319
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.90 E-value=0.1 Score=52.08 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=83.1
Q ss_pred ceEEEEccCC-Cc-eec-CC-C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCC
Q 005240 157 AQLVLGSLDG-TA-KDF-GT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~-~~l-t~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~ 229 (706)
.+||++|+.. ++ ..+ +. . .....++.++.+.+|+|-.... ..+|.+||+..-+ +..+..+.+
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~~ 174 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHKG 174 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecCC
Confidence 5699999954 22 222 11 1 3455666667777999976554 3589999987533 223332322
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceec
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWC 307 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~ws 307 (706)
. ...++|++||.. |+-.+ +.|. .|.+..+. +|.+..++-.. ...+.+++|+
T Consensus 175 ~-------------lAalafs~~G~l-lATAS--eKGT---------VIRVf~v~--~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 175 P-------------LAALAFSPDGTL-LATAS--EKGT---------VIRVFSVP--EGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred c-------------eeEEEECCCCCE-EEEec--cCce---------EEEEEEcC--CccEeeeeeCCceeeEEEEEEEC
Confidence 1 347899999986 65432 2221 24455551 33334444322 5578899999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
||++.|...++ ++..||+.++...
T Consensus 228 ~ds~~L~~sS~--TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 228 PDSQFLAASSN--TETVHIFKLEKVS 251 (391)
T ss_pred CCCCeEEEecC--CCeEEEEEecccc
Confidence 99998887653 3567888887544
No 320
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.87 E-value=0.011 Score=63.93 Aligned_cols=144 Identities=11% Similarity=0.051 Sum_probs=80.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC---chHHHHHHHCCeEEEEcCCCCcCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT---PTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+..+..|++...+ ++.. .|+||+++|||=++.-.....-.+|....... ......|.+.+.+|+.-...| .|
T Consensus 60 ~~~lFyw~~~s~~-~~~~---~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G-~G 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GNPE---APVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAG-VG 134 (462)
T ss_pred CceEEEEEEEcCC-CCCC---CCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCC-cC
Confidence 4578888887664 3332 69999999998554221111112222221110 011223455555555411211 24
Q ss_pred CCCCCCc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhC----------CCceeEEEeccC
Q 005240 569 EGDKLPN--DRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHA----------PHLFCCGIARSG 635 (706)
Q Consensus 569 ~g~~~~~--~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~----------p~~~~a~v~~~~ 635 (706)
++..... ........+|+..+++...++ +.....++.|+|+||||..+..++.+- .=-+++++...|
T Consensus 135 ~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 135 FSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3322111 122356678888888766554 334458999999999999887666441 013788888888
Q ss_pred CCCCC
Q 005240 636 SYNKT 640 (706)
Q Consensus 636 ~~d~~ 640 (706)
..+..
T Consensus 215 ~~dp~ 219 (462)
T PTZ00472 215 LTDPY 219 (462)
T ss_pred ccChh
Confidence 87643
No 321
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.022 Score=56.40 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=124.7
Q ss_pred ceEEEEcc-CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|+++|. +|+..+-..+ ..+..+.++.-|++|+-.+.+- .+.+|+.++- .+.+....+.+
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-------------~~~LWd~~~~-~~c~ks~~gh~-- 193 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL-------------SAKLWDFDTF-FRCIKSLIGHE-- 193 (406)
T ss_pred ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc-------------chhheeHHHH-HHHHHHhcCcc--
Confidence 57888898 7765443333 4578899999999988655432 3778887742 11111111211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
.++..+.+-|-|.. |.=. ..+ ..|+.|+.+ .+-...+++..+.-+..+..+.||..+
T Consensus 194 --------h~vS~V~f~P~gd~-ilS~----srD--------~tik~We~~--tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 194 --------HGVSSVFFLPLGDH-ILSC----SRD--------NTIKAWECD--TGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred --------cceeeEEEEecCCe-eeec----ccc--------cceeEEecc--cceeEEeccCchHhEEEEEecCCeeEE
Confidence 23445677777765 3311 111 147788883 333566777777777788888999877
Q ss_pred EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCC-----CCCceEeccCCCEEEEeeeccCCcceEEEEecCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-----GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF 388 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~ 388 (706)
+..+ .+...++|......-+.+ ....+..++.+...| ..++-.-+.+|..+.++..
T Consensus 251 As~s--~dqtl~vW~~~t~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---------------- 311 (406)
T KOG0295|consen 251 ASCS--NDQTLRVWVVATKQCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---------------- 311 (406)
T ss_pred EecC--CCceEEEEEeccchhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeec----------------
Confidence 7654 334556676654321100 111222332221111 1111111122222222211
Q ss_pred CCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 389 TPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 389 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
+...+..+|+.+|.. |+.. .++..-....+|+|-|++|+-...+.+ +..||+++++.+..-
T Consensus 312 ----rDktIk~wdv~tg~c--L~tL---------~ghdnwVr~~af~p~Gkyi~ScaDDkt----lrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 312 ----RDKTIKIWDVSTGMC--LFTL---------VGHDNWVRGVAFSPGGKYILSCADDKT----LRVWDLKNLQCMKTL 372 (406)
T ss_pred ----ccceEEEEeccCCeE--EEEE---------ecccceeeeeEEcCCCeEEEEEecCCc----EEEEEeccceeeecc
Confidence 112355567777742 1111 111122235789999988887666555 889999887665543
No 322
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.84 E-value=0.26 Score=49.46 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=131.3
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe-cCC-cEEEEEecCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNS-TLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS-pDg-~~l~~~~~~~ 108 (706)
..++.+..+ +++|.-.+ +...+.+++.+|....+++.+.+. +...+|- +|. +.++..+..
T Consensus 106 DWVSsv~~~--~~~Iltgs----------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsas~- 167 (423)
T KOG0313|consen 106 DWVSSVKGA--SKWILTGS----------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSASM- 167 (423)
T ss_pred hhhhhhccc--CceEEEee----------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEecC-
Confidence 366667766 78886643 335566678888888888755543 7778884 333 333333211
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-C--CceecCCC--ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g--~~~~lt~~--~~~~~~~~S 183 (706)
+ ..-.||.++.. . +....-.+ ..+.+++..
T Consensus 168 -D--------------------------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 168 -D--------------------------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred -C--------------------------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 0 12467777762 2 22223224 677889999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc------------CCCCCCCCcccC-ccCCCCcceeee
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD------------LPPAEDIPVCYN-SVREGMRSISWR 250 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~------------~~~~~~~p~~~~-~~~~g~~~~~~s 250 (706)
+||.++.-.+-+ ..|-+|+........+.. .......|.... .....+..+.|+
T Consensus 203 ~sgtr~~SgS~D-------------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 203 SSGTRFCSGSWD-------------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred CCCCeEEeeccc-------------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 999988654433 367777732211111111 111111222111 111124467788
Q ss_pred cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
+.+ .+|.. .+...|.+||+ .++.. ..++ ....+..+..+|..+.|+..+ ...+|.++
T Consensus 270 d~~---v~yS~-----------SwDHTIk~WDl---etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~ 327 (423)
T KOG0313|consen 270 DAT---VIYSV-----------SWDHTIKVWDL---ETGGLKSTLT-TNKSLNCISYSPLSKLLASGS----SDRHIRLW 327 (423)
T ss_pred CCC---ceEee-----------cccceEEEEEe---ecccceeeee-cCcceeEeecccccceeeecC----CCCceeec
Confidence 733 22332 23346889999 55443 3343 456677888899888787765 23468888
Q ss_pred cCCCCCCCceee-ecCcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 330 CPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 330 d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
|+.++++..... +-..-..+ -.+.|+|...+++.+...
T Consensus 328 DPR~~~gs~v~~s~~gH~nwV------ssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWV------SSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred CCCCCCCceeEEeeecchhhh------hheecCCCCceEEEEEec
Confidence 988876543332 11111111 126688988888777654
No 323
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.032 Score=59.46 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=42.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+.+++|-|||..|..+. ...|+++|+..|.. ..+-.+.. .+..++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccC
Confidence 578899999999998854 37899999876554 44432322 37789999999997754
No 324
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=1.1 Score=48.61 Aligned_cols=100 Identities=14% Similarity=0.307 Sum_probs=59.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+...++|.+.+.||..+. ++.-+|| ++..+=. .++..++. +..+..++|++.|+ |+.. .
T Consensus 27 ~I~slA~s~kS~~lAvsRt--------~g~IEiw--N~~~~w~~~~vi~g~~---drsIE~L~W~e~~R-LFS~-g---- 87 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRT--------DGNIEIW--NLSNNWFLEPVIHGPE---DRSIESLAWAEGGR-LFSS-G---- 87 (691)
T ss_pred ceEEEEEeccCCceeeecc--------CCcEEEE--ccCCCceeeEEEecCC---CCceeeEEEccCCe-EEee-c----
Confidence 3778899999999998765 5556665 4444321 22222222 23477899996666 4432 1
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~-~~~~~~~~SpDG~ 187 (706)
..+.|--+|+ +++.. .+... +.+..++.+|-++
T Consensus 88 --------------------------------------------~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 88 --------------------------------------------LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT 123 (691)
T ss_pred --------------------------------------------CCceEEEEecccCceeEEecCCCcceeEEEeCCccc
Confidence 1156667777 66333 33222 5677788888887
Q ss_pred EEEEEee
Q 005240 188 YVLITSM 194 (706)
Q Consensus 188 ~i~~~~~ 194 (706)
.++....
T Consensus 124 ~l~Igcd 130 (691)
T KOG2048|consen 124 ILAIGCD 130 (691)
T ss_pred eEEeecC
Confidence 7766543
No 325
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=96.79 E-value=0.012 Score=58.74 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH---CCeEEEEcCCCCcCCCCCCCCc--------hhhHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPN--------DRFVEQ 581 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~g~g~~~~~--------~~~~~~ 581 (706)
.++||++-|.| |-..| +..+...|.+ ..|.|+.... .|+...... .-..++
T Consensus 2 ~~li~~IPGNP------------Glv~f---Y~~Fl~~L~~~l~~~~~i~~ish---~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNP------------GLVEF---YEEFLSALYEKLNPQFEILGISH---AGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCC------------ChHHH---HHHHHHHHHHhCCCCCeeEEecC---CCCcCCcccccccCCCCccCHHH
Confidence 47889998876 11122 2344555553 4788887333 233222111 111223
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSY 637 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~ 637 (706)
.++-..+.++.+.........++.++|||.|+||++.++-+.+ ..++.++..-|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 3333334444444432113469999999999999999999998 5777777777764
No 326
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.76 E-value=0.0076 Score=65.79 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=64.2
Q ss_pred CceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch
Q 005240 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (706)
Q Consensus 60 ~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (706)
+...|.++|..+-+..+...+.++ .+.++.+||||++|+..+.+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~n----ritd~~FS~DgrWlisasmD-------------------------------- 597 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGN----RITDMTFSPDGRWLISASMD-------------------------------- 597 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcccc----ceeeeEeCCCCcEEEEeecC--------------------------------
Confidence 457899999887766554432222 27789999999999987532
Q ss_pred hccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..|.++|+ +|. .--+.......++.+||+|.+|+.+.... ..||+|.-
T Consensus 598 -----------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~------------~gIylWsN 647 (910)
T KOG1539|consen 598 -----------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ------------NGIYLWSN 647 (910)
T ss_pred -----------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecC------------ceEEEEEc
Confidence 56777788 663 22232224566899999999999877653 47888863
No 327
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.75 E-value=0.0058 Score=65.04 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=62.4
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
...+.|.+.||.+- ..-.|+|..|+........+.++...++.+.+.. ...+|.++||||||.+++..+..+|+
T Consensus 112 ~li~~L~~~GY~~~----~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKEG----KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCccC----CCcccCCCCccccccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHHHHHCCH
Confidence 45677889999762 1233555555543334556777888888776652 23689999999999999999988876
Q ss_pred c----eeEEEeccCCCCC
Q 005240 626 L----FCCGIARSGSYNK 639 (706)
Q Consensus 626 ~----~~a~v~~~~~~d~ 639 (706)
. ++..|+.++.+.-
T Consensus 186 ~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred hHHhHhccEEEECCCCCC
Confidence 4 6778888876653
No 328
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.047 Score=57.64 Aligned_cols=265 Identities=13% Similarity=0.144 Sum_probs=135.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE--EEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~--l~~~~~~~~ 109 (706)
.+..+...|-|.+||-.+. +|...||. +.||.+.+.....+. +.+++|.|.++. |+... ...
T Consensus 402 ~Vr~iSvdp~G~wlasGsd--------DGtvriWE--i~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~-~~~ 465 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD--------DGTVRIWE--IATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAV-GEC 465 (733)
T ss_pred eEEEEEecCCcceeeecCC--------CCcEEEEE--eecceEEEEEeecce-----eEEEEecCCCCceeEEEEe-cCc
Confidence 3667788899999988654 55555654 568876655444443 889999999874 33332 111
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC----C---CceecCCCceEeeeee
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----G---TAKDFGTPAVYTAVEP 182 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~----g---~~~~lt~~~~~~~~~~ 182 (706)
-+.. +. ..|..+....... ++. ... .......++..+.-. + -...|.....+..+.|
T Consensus 466 -~~iv-np-~~G~~~e~~~t~e-----ll~---~~~-----~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 466 -VLIV-NP-IFGDRLEVGPTKE-----LLA---SAP-----NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred -eEEe-Cc-cccchhhhcchhh-----hhh---cCC-----CccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 1000 00 0000000000000 000 000 000011233333221 1 1223333456788999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
..+|.||+.+..... ...+.+..+.....+ . ...-..+. +-...|.|-... |++...
T Consensus 530 HrkGDYlatV~~~~~----------~~~VliHQLSK~~sQ-~-PF~kskG~----------vq~v~FHPs~p~-lfVaTq 586 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSG----------NKSVLIHQLSKRKSQ-S-PFRKSKGL----------VQRVKFHPSKPY-LFVATQ 586 (733)
T ss_pred ecCCceEEEeccCCC----------cceEEEEeccccccc-C-chhhcCCc----------eeEEEecCCCce-EEEEec
Confidence 999999998776543 357788877633221 1 11001011 225578887776 443321
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
. .|.++|+ ..++ ++.|......++.++.+|.|--|+..+. ..++..+|++=+...-+.|
T Consensus 587 ~-------------~vRiYdL---~kqelvKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 587 R-------------SVRIYDL---SKQELVKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred c-------------ceEEEeh---hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHh
Confidence 1 2666776 3222 2345566778889999999888887652 2345566655432222222
Q ss_pred --ecCcccccccCCCCCceE-eccCCCEEEEee
Q 005240 342 --FDRVFENVYSDPGSPMMT-RTSTGTNVIAKI 371 (706)
Q Consensus 342 --~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~ 371 (706)
....+.++...+..+-++ -|+||..++|-.
T Consensus 647 r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 647 RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 334444554444444333 478888777754
No 329
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=96.70 E-value=0.027 Score=54.59 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~d 638 (706)
.+-+..+++++.+.. ...+.+|.+.||||||.++-.++...+ +.++.++..+....
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 333445556555432 356789999999999999888876543 46788887765433
No 330
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=96.70 E-value=0.0033 Score=66.41 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEE-EEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~-i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+.|..+.+..+++.--+ +++. ++|+||||+.++..+.++|++++.+|..++
T Consensus 143 ~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 143 ILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred HHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 34444444444443223 5675 999999999999999999999999998865
No 331
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.69 E-value=0.25 Score=50.56 Aligned_cols=161 Identities=10% Similarity=0.103 Sum_probs=91.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC--CeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
..+..++|.|-.+.|+-+... ...+.+||+-. .+.+....... ..+..++|+|-
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~d------------d~~L~iwD~R~~~~~~~~~~~ah~------------~~vn~~~fnp~ 283 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGD------------DGKLMIWDTRSNTSKPSHSVKAHS------------AEVNCVAFNPF 283 (422)
T ss_pred cceehhhccccchhhheeecC------------CCeEEEEEcCCCCCCCcccccccC------------CceeEEEeCCC
Confidence 567889999988877544333 25899999874 22222211111 11336789998
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
+...|+ . .+.+. +|.++|+..+. ..+..+..+...+..+.|||+...|+..+. .++...+|-+.--
T Consensus 284 ~~~ilA-T---~S~D~--------tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~i 349 (422)
T KOG0264|consen 284 NEFILA-T---GSADK--------TVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRI 349 (422)
T ss_pred CCceEE-e---ccCCC--------cEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccc
Confidence 876333 2 22222 47888884222 233445567888999999999888776653 3345556655543
Q ss_pred CCCCCceeeecCccccccc----CCCCCceEeccCCCEEEEeeec
Q 005240 333 SKDVAPRVLFDRVFENVYS----DPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
+.+..+..-.+...+-++. ......++|.|..-+++.++.+
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 3211101111222221111 1234568899999999888754
No 332
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.67 E-value=0.52 Score=47.78 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=28.7
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 224 (706)
.++..++|+||+..+++.+.. +.+++||+..+..-..
T Consensus 124 ~diydL~Ws~d~~~l~s~s~d-------------ns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVD-------------NSVRLWDVHAGQLLAI 160 (434)
T ss_pred cchhhhhccCCCceeeeeecc-------------ceEEEEEeccceeEee
Confidence 567789999999999887764 4789999986654433
No 333
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.002 Score=56.64 Aligned_cols=49 Identities=35% Similarity=0.549 Sum_probs=42.0
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
-.|++++.. |.+..+.|.||||++|+....++|++|..+|+.+|++|..
T Consensus 91 erYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 91 ERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred HHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 456766643 4678899999999999999999999999999999998754
No 334
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.64 E-value=0.048 Score=51.31 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=78.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
-+|.++|..+ |+..+-- .....+.++-+|+||+.|..+ ....|-.+|+++=...+-..-+-
T Consensus 165 ~tVRLWD~rT----gt~v~sL--~~~s~VtSlEvs~dG~ilTia-----------~gssV~Fwdaksf~~lKs~k~P~-- 225 (334)
T KOG0278|consen 165 KTVRLWDHRT----GTEVQSL--EFNSPVTSLEVSQDGRILTIA-----------YGSSVKFWDAKSFGLLKSYKMPC-- 225 (334)
T ss_pred CceEEEEecc----CcEEEEE--ecCCCCcceeeccCCCEEEEe-----------cCceeEEeccccccceeeccCcc--
Confidence 3567777766 6665543 344458888999999888653 23455556766533222212222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+.+...+|+...+++.. ...-+|.+|.
T Consensus 226 ---nV~SASL~P~k~~fVaGg-------------------------------------------------ed~~~~kfDy 253 (334)
T KOG0278|consen 226 ---NVESASLHPKKEFFVAGG-------------------------------------------------EDFKVYKFDY 253 (334)
T ss_pred ---ccccccccCCCceEEecC-------------------------------------------------cceEEEEEec
Confidence 366778888887655431 1156788888
Q ss_pred -CC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 165 -DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 165 -~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
+| +......+ +.+.+++|||||..-+..+.+ ..|.+|-..-
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED-------------GTirlWQt~~ 298 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED-------------GTIRLWQTTP 298 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCC-------------ceEEEEEecC
Confidence 66 44333233 789999999999665433332 2677776553
No 335
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.63 E-value=0.3 Score=49.80 Aligned_cols=188 Identities=11% Similarity=0.098 Sum_probs=104.2
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
+....+......|.|++|..+++ ++ ..-..|..+|.. .++... ... -.+.+.++.|||-.+...+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~--------d~--~w~Fsd~~~g~~lt~vs~~-~s~--v~~ts~~fHpDgLifgtgt- 366 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASN--------DG--TWAFSDISSGSQLTVVSDE-TSD--VEYTSAAFHPDGLIFGTGT- 366 (506)
T ss_pred cccccceeeeeccCCcEEEEecC--------Cc--eEEEEEccCCcEEEEEeec-ccc--ceeEEeeEcCCceEEeccC-
Confidence 34446788899999999988764 22 222234445542 223221 111 1256789999995433221
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~S 183 (706)
..+.|-.+|+.. ...+.... +.+..++||
T Consensus 367 ------------------------------------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs 398 (506)
T KOG0289|consen 367 ------------------------------------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS 398 (506)
T ss_pred ------------------------------------------------CCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence 126777888843 44444444 788999999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
-+|=+|+...+++ .+.+||+..- ..+.+.-... .+...+.|-+.|.. |...
T Consensus 399 ENGY~Lat~add~-------------~V~lwDLRKl~n~kt~~l~~~------------~~v~s~~fD~SGt~-L~~~-- 450 (506)
T KOG0289|consen 399 ENGYWLATAADDG-------------SVKLWDLRKLKNFKTIQLDEK------------KEVNSLSFDQSGTY-LGIA-- 450 (506)
T ss_pred cCceEEEEEecCC-------------eEEEEEehhhcccceeecccc------------ccceeEEEcCCCCe-EEee--
Confidence 9999998776553 4999998632 2222222111 12335667777765 3311
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceE---EeecccccccceecCCCceEEEEee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
+.+. .||+++- .+.+-+. +....+....+.|..+.++++..+.
T Consensus 451 --g~~l--------~Vy~~~k---~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 451 --GSDL--------QVYICKK---KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred --ccee--------EEEEEec---ccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 1111 3556553 2333333 2333445555666666676665543
No 336
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.61 E-value=0.077 Score=51.07 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=70.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-e-cccCCCccccccccceEEec--CCcEEEEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-P-LFESPDICLNAVFGSFVWVN--NSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~-lt~~~~~~~~~~~~~~~wSp--Dg~~l~~~~~~ 107 (706)
.+..+.|-|++.+||-.. ..+|-+++++.+..+ + +...........+.+-+||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~-----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d- 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD- 192 (370)
T ss_pred ceeeEEEcCCCCeeEEec-----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC-
Confidence 567789999999999864 256666676655432 1 11111110011244668998 8888776632
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC--ceEeeeeeC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~--~~~~~~~~S 183 (706)
+.|+-+|+.. +...+... ..+..+.+.
T Consensus 193 -------------------------------------------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 193 -------------------------------------------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred -------------------------------------------------CcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 4566666622 33334333 457789999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
|+-++++.+..+. ..|.+||..
T Consensus 224 pnkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 224 PNKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CCceEEEEEcCCC------------ccEEEEecc
Confidence 9999998777653 468888876
No 337
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0069 Score=61.12 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
-+.|.+.+-+.|++.=-| +++ +|+|.||||+.|+.-+.++|++++.++.++..
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 356666666666554223 445 49999999999999999999999988888763
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.34 Score=51.29 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=101.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
+.|.+.++.. .+.+...+.+......+++|||+.++.+... .+...++++|..+++..+.......
T Consensus 96 ~~v~vid~~~------~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~~- 161 (381)
T COG3391 96 NTVSVIDTAT------NTVLGSIPVGLGPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGNT- 161 (381)
T ss_pred CeEEEEcCcc------cceeeEeeeccCCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCCC-
Confidence 4555555422 3333334455567789999999999554320 1468899999888765544221111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
....+.+|+|+.++.... ....|..++.
T Consensus 162 ----P~~~a~~p~g~~vyv~~~------------------------------------------------~~~~v~vi~~ 189 (381)
T COG3391 162 ----PTGVAVDPDGNKVYVTNS------------------------------------------------DDNTVSVIDT 189 (381)
T ss_pred ----cceEEECCCCCeEEEEec------------------------------------------------CCCeEEEEeC
Confidence 356789999998776531 1256777777
Q ss_pred CC-Ccee------cCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 165 DG-TAKD------FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 165 ~g-~~~~------lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
++ ...+ +..+.....+.++|||++++....... ...+...+...+.+.......... .
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~~~~-~---- 254 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPVGSG-A---- 254 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC----------CceEEEEeCCCceEEEeccccccC-C----
Confidence 55 3332 222245568899999999977665431 247788888776655432211111 1
Q ss_pred CccCCCCcceeeecCCCceEEEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+..+..+|+|+. +|..
T Consensus 255 ------~~~v~~~p~g~~-~yv~ 270 (381)
T COG3391 255 ------PRGVAVDPAGKA-AYVA 270 (381)
T ss_pred ------CCceeECCCCCE-EEEE
Confidence 235688999986 5543
No 339
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=96.56 E-value=0.0055 Score=55.68 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCcCCCCCCCCch-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPND-RF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~-~~-~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
.-+.|+..+.. |||.+-..+ .+ .+-..+|...+++-+... +-.++-|+|||-||..|+.+|+++++.+.-.|
T Consensus 70 l~~TivawDPp---GYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVAWDPP---GYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEEECCC---CCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 44777774443 677765532 22 234567888888877664 44789999999999999999999999877776
Q ss_pred eccCC
Q 005240 632 ARSGS 636 (706)
Q Consensus 632 ~~~~~ 636 (706)
.+++.
T Consensus 144 iwga~ 148 (277)
T KOG2984|consen 144 IWGAA 148 (277)
T ss_pred eeccc
Confidence 66653
No 340
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.48 Score=44.77 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred EEeecccccccceecCC-C-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC-CCceEeccCCCEEEE
Q 005240 293 ILHKLDLRFRSVSWCDD-S-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG-SPMMTRTSTGTNVIA 369 (706)
Q Consensus 293 ~l~~~~~~~~~~~wspD-g-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 369 (706)
.|..+..-+.+++|.|. | .....++...++..-||..+.+...-+.++|.+ + |+ ...++||.-|..|++
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f------~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--F------PDVVWRVSWSLSGNILAV 273 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--C------CcceEEEEEeccccEEEE
Confidence 36677888999999997 2 122222333446777898886654334444422 1 12 224789999999888
Q ss_pred ee
Q 005240 370 KI 371 (706)
Q Consensus 370 ~~ 371 (706)
+.
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 75
No 341
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.52 E-value=0.0068 Score=56.53 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=69.7
Q ss_pred EEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC
Q 005240 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (706)
Q Consensus 485 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (706)
+.+...||..+.+.+|--++ + .+-.+.+-|++ +.+.. ....+++..+++||.|+.-++|
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-~------~~g~~~va~a~-----------Gv~~~---fYRrfA~~a~~~Gf~Vlt~dyR 66 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-K------ASGRLVVAGAT-----------GVGQY---FYRRFAAAAAKAGFEVLTFDYR 66 (281)
T ss_pred cccccCCCccCccccccCCC-C------CCCcEEecccC-----------Ccchh---HhHHHHHHhhccCceEEEEecc
Confidence 56777899999999994433 1 22122233321 11111 1234667777899999996776
Q ss_pred CcCCCCCCCCc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 565 PIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 565 ~~~g~g~~~~~------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
|. |++-.. ..+.+-...|+.++++++.+.- -.......||||||.+.-. +..+|
T Consensus 67 G~---g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL-~~~~~ 126 (281)
T COG4757 67 GI---GQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGL-LGQHP 126 (281)
T ss_pred cc---cCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecc-cccCc
Confidence 44 433221 2344456789999999998742 2357899999999986543 34443
No 342
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.48 E-value=0.25 Score=47.77 Aligned_cols=221 Identities=14% Similarity=0.197 Sum_probs=117.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe-----EEEEeeccccccccCCceeEEEEEcCCCceeec
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-----IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~-----laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 77 (706)
+.+.|.|..|+. .+++-..-..++....++-.-|.||.+- ||.+ +..-.||.++.+.++.+..
T Consensus 71 ~~Nkvqiv~ld~--~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----------~D~LRlWri~~ee~~~~~~ 138 (364)
T KOG0290|consen 71 YNNKVQIVQLDE--DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----------SDFLRLWRIGDEESRVELQ 138 (364)
T ss_pred cCCeeEEEEEcc--CCCceeccCCCCCCCCccceEecCCccccCcchhhcc----------cCeEEEEeccCcCCceehh
Confidence 557788888876 4444443332222235677889999863 3332 3446788877655443322
Q ss_pred ---ccCCCccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhh
Q 005240 78 ---FESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (706)
Q Consensus 78 ---t~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (706)
.........+...+|.|.. |-++|...+-+
T Consensus 139 ~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD---------------------------------------------- 172 (364)
T KOG0290|consen 139 SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID---------------------------------------------- 172 (364)
T ss_pred hhhccCcccccCCcccccccccCCcceeEeeccc----------------------------------------------
Confidence 1111111222355788874 44544433210
Q ss_pred cccceEEEEcc-CC----CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 154 YTTAQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 154 ~~~~~l~~~~l-~g----~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
+.+-++|+ .| --++|-.. ..+..++|+.+|..++ .+...+ ..+.++|+...+..++...
T Consensus 173 ---TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~F-ASvgaD-----------GSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 173 ---TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVF-ASVGAD-----------GSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ---CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceE-EEecCC-----------CcEEEEEecccccceEEec
Confidence 33444455 33 12344444 6788999999888775 444332 3678888876555554443
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws 307 (706)
+.....| .-.++|++.....++.+. .+...|.++|+. ......-+|..+...+..++|.
T Consensus 238 ~p~~~~p---------LlRLswnkqDpnymATf~-----------~dS~~V~iLDiR-~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 238 DPSPSTP---------LLRLSWNKQDPNYMATFA-----------MDSNKVVILDIR-VPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred CCCCCCc---------ceeeccCcCCchHHhhhh-----------cCCceEEEEEec-CCCcceehhhcCcccccceEec
Confidence 3221111 125566665443122111 122246666662 1122334566778899999999
Q ss_pred CCCceEEEEe
Q 005240 308 DDSLALVNET 317 (706)
Q Consensus 308 pDg~~l~~~~ 317 (706)
|-...-+.+.
T Consensus 297 PhS~~hicta 306 (364)
T KOG0290|consen 297 PHSSSHICTA 306 (364)
T ss_pred CCCCceeeec
Confidence 9976555543
No 343
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=96.46 E-value=0.012 Score=54.04 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 536 SPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
+|..+ ....+..|+++|+.|+-.+..- | |.....-++...|+..++++..++- ..+++.+.|.|+|+-+
T Consensus 13 Gw~~~---d~~~a~~l~~~G~~VvGvdsl~---Y---fw~~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADv 81 (192)
T PF06057_consen 13 GWRDL---DKQIAEALAKQGVPVVGVDSLR---Y---FWSERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADV 81 (192)
T ss_pred Cchhh---hHHHHHHHHHCCCeEEEechHH---H---HhhhCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchh
Confidence 55433 4567889999999999744431 1 2233345677899999999888762 3589999999999988
Q ss_pred HHHHHHhCCC----ceeEEEeccCC
Q 005240 616 TAHLLAHAPH----LFCCGIARSGS 636 (706)
Q Consensus 616 a~~~~~~~p~----~~~a~v~~~~~ 636 (706)
...+..+-|. +++.+++++|.
T Consensus 82 lP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 82 LPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred HHHHHhhCCHHHHhheeEEEEeccC
Confidence 8888777655 57777777764
No 344
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.44 E-value=0.076 Score=57.26 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred ceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCce
Q 005240 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 464 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~ 464 (706)
.+..+++.+|+.++.+.+..+.... + ..+...|.|.+|+.+.++-+ +-.+|..+|++
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~-l-------IKv~lDPSgiY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGD-L-------IKVILDPSGIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCc-e-------EEEEECCCccEEEEeecCCc----eEEEEeccchh
Confidence 4777999999999998775431111 1 13567788888888887776 77888777653
No 345
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.41 E-value=0.086 Score=49.91 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred EccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcC
Q 005240 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (706)
Q Consensus 488 ~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (706)
.-.+|..|..|-..|++-.+.+ .|.||..-| +......+--.+.+|+..||.|+..+.....
T Consensus 8 ~~~~~~~I~vwet~P~~~~~~~---~~tiliA~G---------------f~rrmdh~agLA~YL~~NGFhViRyDsl~Hv 69 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNNEPKR---NNTILIAPG---------------FARRMDHFAGLAEYLSANGFHVIRYDSLNHV 69 (294)
T ss_dssp EETTTEEEEEEEE---TTS------S-EEEEE-T---------------T-GGGGGGHHHHHHHHTTT--EEEE---B--
T ss_pred EcCCCCEEEEeccCCCCCCccc---CCeEEEecc---------------hhHHHHHHHHHHHHHhhCCeEEEeccccccc
Confidence 3458999999999999744433 578887654 1112112224567788999999975544333
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 568 g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
|-....-.+-.+.....|+..+++||.+.+. .++|++-.|.-|=+|...+.+- + ...+|...|+.|.+
T Consensus 70 GlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr 137 (294)
T PF02273_consen 70 GLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLR 137 (294)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HH
T ss_pred cCCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHH
Confidence 4322222334456678899999999998763 6799999999999999999854 4 66667777887643
No 346
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=96.38 E-value=0.021 Score=58.79 Aligned_cols=58 Identities=17% Similarity=0.013 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+=-.+-|++-|+.++.++-. -+.-++.++|+|+||||+..++--.|..|.+++..++.
T Consensus 159 GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~ 218 (403)
T PF11144_consen 159 GIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSY 218 (403)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcc
Confidence 33447899999999998722 23459999999999999999999999999999988864
No 347
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.37 E-value=0.026 Score=58.95 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=93.3
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v 558 (706)
.+.+.-.+.+.++.-.+=++|.+..+.... -|+.|++-|.+. ..+.|.+... ..+ ..|| +.|-.|
T Consensus 56 ~~Q~lDhF~~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEgp--------~~~~wv~~~~--~~~-~~~AkkfgA~v 121 (514)
T KOG2182|consen 56 FTQKLDHFDSSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEGP--------ESDKWVGNEN--LTW-LQWAKKFGATV 121 (514)
T ss_pred hhhhhhhhhcchhhhhhhheeeccccccCC---CceEEEEcCCCC--------CCCCccccCc--chH-HHHHHHhCCee
Confidence 344444455555666667788888764222 489999987632 2233444422 123 3445 588888
Q ss_pred EEcCCCCcCCCCCCCCc-------hh--hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCcee
Q 005240 559 LAGPSIPIIGEGDKLPN-------DR--FVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 628 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~-------~~--~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~ 628 (706)
+.... +=||++... .. ...+++.|+...|+.+..+ ++-|+.+.+.+|.||=|.|++|.=..+|+++.
T Consensus 122 ~~lEH---RFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~ 198 (514)
T KOG2182|consen 122 FQLEH---RFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTV 198 (514)
T ss_pred EEeee---eccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhhe
Confidence 76211 124444321 11 2447899999999999776 46677799999999999999999999999988
Q ss_pred EEEeccCCCC
Q 005240 629 CGIARSGSYN 638 (706)
Q Consensus 629 a~v~~~~~~d 638 (706)
++|+.++...
T Consensus 199 GsvASSapv~ 208 (514)
T KOG2182|consen 199 GSVASSAPVL 208 (514)
T ss_pred eeccccccee
Confidence 8887776543
No 348
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.33 E-value=1.7 Score=45.45 Aligned_cols=57 Identities=7% Similarity=0.130 Sum_probs=35.7
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee--cccCCCccccccccceEEecCCcEE
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP--LFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+..+.|.|-+..|..+ -++..|+.++++++...+ -+..... ...+....|.+||+.|
T Consensus 203 v~~a~FHPtd~nliit----------~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIIT----------CGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGDVI 261 (626)
T ss_pred EEEEEeccCCCcEEEE----------eCCceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCCEE
Confidence 5667899988777665 456788888888775322 2222111 1225577788888753
No 349
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.95 Score=42.04 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=17.4
Q ss_pred ceEeeeeeCCCCcEEEEEeec
Q 005240 175 AVYTAVEPSPDQKYVLITSMH 195 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~ 195 (706)
+.+...+|||+|+.|+-.+++
T Consensus 90 gsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred ccEEEEEecCccCeEEecCCC
Confidence 577789999999999876655
No 350
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.28 E-value=0.22 Score=48.09 Aligned_cols=195 Identities=18% Similarity=0.172 Sum_probs=108.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-----eeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.++..+=||-.++|..+...+-.+...-....||.++-+-+. ..++...+..... .+..+.|-||++.|+...+
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDD 143 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEecc
Confidence 577788899777776655421111111134668887754333 3334333322111 2568899999999887631
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-C-ceecCCC------ceE
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T-AKDFGTP------AVY 177 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~-~~~lt~~------~~~ 177 (706)
..|.++++ .+ + ...+... ...
T Consensus 144 --------------------------------------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 144 --------------------------------------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred --------------------------------------------------CceEEEEcccCcchheeeccccccccccee
Confidence 34555565 22 2 1222111 245
Q ss_pred eeeeeCC--CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 178 TAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 178 ~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.+-+||| ||..++.+... .+.-||+.+.+ .-.+.+..+ .-++++.|.|+.+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~~~sI~dAHg------------q~vrdlDfNpnkq 227 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKKNNSIEDAHG------------QRVRDLDFNPNKQ 227 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhhhcchhhhhc------------ceeeeccCCCCce
Confidence 6778999 89998866543 57778876432 111111111 1155788999987
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEe
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
..|+ .. ++. ..|.+||.. .+.. ++.|..+.--+..+.|.|---.|+...
T Consensus 228 ~~lv-t~----gDd-------gyvriWD~R--~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 228 HILV-TC----GDD-------GYVRIWDTR--KTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEEE-Ec----CCC-------ccEEEEecc--CCCccccccCCCceEEEEEEecCccceEEEec
Confidence 6333 21 222 247788773 2333 344566677788888888866666543
No 351
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.25 E-value=0.15 Score=52.74 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=86.9
Q ss_pred ceEEEEcc-CC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
++|.+..+ ++ ..+.++.+ ..++-+.+||-.+.++.+.... ..+-+||+.|....--.. -...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~--~~Hs 208 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHAS--EAHS 208 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchh--hhcc
Confidence 67777777 45 55556555 4566889999999888766553 378899998764322111 1111
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
.| -+.+.|||.... |+... +-+. .|+++|. ...+...-.........++|+++|.+
T Consensus 209 AP---------~~gicfspsne~-l~vsV---G~Dk--------ki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 209 AP---------CRGICFSPSNEA-LLVSV---GYDK--------KINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CC---------cCcceecCCccc-eEEEe---cccc--------eEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 12 237899998886 43221 2222 4888887 32222222234566788999999999
Q ss_pred EEEEeeccccceEEEEEcCCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
|+... ...+|+.+|+.+.+
T Consensus 265 L~aG~----s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRSTK 283 (673)
T ss_pred EEeec----CCceEEEEecccCC
Confidence 88764 34579999998853
No 352
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.22 E-value=0.02 Score=54.70 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=39.5
Q ss_pred hHHHHHHHCCeE---EEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHH
Q 005240 546 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (706)
Q Consensus 546 ~~~~~l~~~G~~---v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~ 619 (706)
..+..|.+.||. |+..++- .+........ .-+....+.+.|+.+++. ... ||=|.|||+||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~tyg----~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTYG----SGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE--S-----CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccCC----CCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 456789999999 5764441 1111011111 112345666666666654 335 89999999999999998
Q ss_pred HHhC
Q 005240 620 LAHA 623 (706)
Q Consensus 620 ~~~~ 623 (706)
+...
T Consensus 93 i~~~ 96 (219)
T PF01674_consen 93 IKGG 96 (219)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 8643
No 353
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.20 E-value=0.029 Score=56.95 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee-EEEeccCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSY 637 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~-a~v~~~~~~ 637 (706)
-++.+.|....+.+|++........|+++|+||||+|++|.=.++|.++. |.++.+|+.
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 45779999999999988744556899999999999999999999999766 555556654
No 354
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.20 E-value=0.049 Score=52.21 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=51.2
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEEechHHHHHHHHHHhC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS--RIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~--~i~i~G~S~GG~~a~~~~~~~ 623 (706)
.+.+.|+++||+|++.++.. .|............+..+++.|.++...++. .+.=.|||+|+-+-+.+...+
T Consensus 38 ~lLe~La~~Gy~ViAtPy~~------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 38 YLLERLADRGYAVIATPYVV------TFDHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred HHHHHHHhCCcEEEEEecCC------CCcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 45577889999999955532 2233333445566677778888776544433 677899999999999988776
Q ss_pred CC
Q 005240 624 PH 625 (706)
Q Consensus 624 p~ 625 (706)
+.
T Consensus 112 ~~ 113 (250)
T PF07082_consen 112 DV 113 (250)
T ss_pred cC
Confidence 43
No 355
>PRK04940 hypothetical protein; Provisional
Probab=96.19 E-value=0.08 Score=48.53 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=53.0
Q ss_pred CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-------CCCccch---H----------------------H
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-------LTPFGFQ---A----------------------E 649 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~-------~~~~~~~---~----------------------~ 649 (706)
++++|+|.|+|||.|.+++.++. ++|++ .+|..... ..+..|. . |
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aVL-iNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~~~~p~r~~vllq~gDE 136 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQVI-FNPNLFPEENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDE 136 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEEE-ECCCCChHHHHHHHhCCCcchhhhhHHHHHHhhhcCcccEEEEEeCCCc
Confidence 46999999999999999999993 45554 45554321 0011110 0 0
Q ss_pred --HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 650 --RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 650 --~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
.+.++.....--.+..+.+|.+|.|.. -.+....|++|+.
T Consensus 137 vLDyr~a~~~y~~~y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 137 VLDSQRTAEELHPYYEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred ccCHHHHHHHhccCceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 333333332222368899999999975 3456777888874
No 356
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.16 E-value=0.15 Score=50.97 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=77.2
Q ss_pred eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCc
Q 005240 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMR 245 (706)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~ 245 (706)
++++.. ..+..+.|||..+.++++.... ..|.+||+..+. ...++.....+ +.
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~D------------gsIrIWDiRs~~~~~~~~~kAh~sD------------VN 306 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCD------------GSIRIWDIRSGPKKAAVSTKAHNSD------------VN 306 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecC------------ceEEEEEecCCCccceeEeeccCCc------------ee
Confidence 344444 5678999999999998777653 378999987542 22222221111 23
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccce
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
-++|+-+-.. |+. ++ +.+.+-+||+..+..+++...+ .+...+..+.|+|.-..++.++.. +.+.
T Consensus 307 VISWnr~~~l-Las-----G~-------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~Qi 372 (440)
T KOG0302|consen 307 VISWNRREPL-LAS-----GG-------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQI 372 (440)
T ss_pred eEEccCCcce-eee-----cC-------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcE
Confidence 5688866552 432 22 2345888999767777766544 568889999999975444443322 2445
Q ss_pred EEEEEcCC
Q 005240 325 RTWLVCPG 332 (706)
Q Consensus 325 ~l~~~d~~ 332 (706)
.||-+.++
T Consensus 373 tiWDlsvE 380 (440)
T KOG0302|consen 373 TIWDLSVE 380 (440)
T ss_pred EEEEeecc
Confidence 56665544
No 357
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.12 E-value=0.11 Score=56.70 Aligned_cols=202 Identities=12% Similarity=0.145 Sum_probs=121.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|.++||... +..++++.+.+.. .+..+.|++---.|..+... ++...+ +|+...+.+..++....
T Consensus 111 ~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------Dg~vK~--~DlR~~~S~~t~~~nSE- 177 (839)
T KOG0269|consen 111 VISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------DGTVKC--WDLRSKKSKSTFRSNSE- 177 (839)
T ss_pred cEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecCC-------CceEEE--Eeeecccccccccccch-
Confidence 5788999653 5566766555443 67788999988888776542 444445 56666665666554332
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.++++.|||--...++...+ .+.|-++|+
T Consensus 178 ---SiRDV~fsp~~~~~F~s~~d------------------------------------------------sG~lqlWDl 206 (839)
T KOG0269|consen 178 ---SIRDVKFSPGYGNKFASIHD------------------------------------------------SGYLQLWDL 206 (839)
T ss_pred ---hhhceeeccCCCceEEEecC------------------------------------------------CceEEEeec
Confidence 37899999855433333221 145666677
Q ss_pred CC---CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCc
Q 005240 165 DG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNS 239 (706)
Q Consensus 165 ~g---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~ 239 (706)
.- -..+++.. +.+..+.|+|++.+||-.. + ...+.+|+..+.+...+ +-...+ |
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-R------------DK~vkiWd~t~~~~~~~~tInTia---p----- 265 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-R------------DKMVKIWDMTDSRAKPKHTINTIA---P----- 265 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecC-C------------CccEEEEeccCCCccceeEEeecc---e-----
Confidence 32 34566666 7889999999999998544 2 24899999986554332 211111 1
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecC
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCD 308 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wsp 308 (706)
+..+.|.|+.+..|+-.+.- ....|++||+. .-=-+ ..+..+...+..+.|..
T Consensus 266 ----v~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDvr--RPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 266 ----VGRVKWRPARSYHLATCSMV----------VDTSVHVWDVR--RPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ----eeeeeeccCccchhhhhhcc----------ccceEEEEeec--cccccceeeeccCccccceeccC
Confidence 33779999998756533211 11247888872 00011 12334455666777754
No 358
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.08 E-value=0.014 Score=57.69 Aligned_cols=81 Identities=9% Similarity=0.115 Sum_probs=52.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~ 83 (706)
.+|+|+|+-+ +.+++++..+..-..+.|+| +-..|+.. +...+||.+|... ..+..+..+..
T Consensus 210 rsIvLyD~R~------~~Pl~KVi~~mRTN~IswnP--eafnF~~a--------~ED~nlY~~DmR~l~~p~~v~~dhv- 272 (433)
T KOG0268|consen 210 RSIVLYDLRQ------ASPLKKVILTMRTNTICWNP--EAFNFVAA--------NEDHNLYTYDMRNLSRPLNVHKDHV- 272 (433)
T ss_pred CceEEEeccc------CCccceeeeeccccceecCc--cccceeec--------cccccceehhhhhhcccchhhcccc-
Confidence 5788988844 45555555555566899999 44456553 5568999999754 23333332221
Q ss_pred cccccccceEEecCCcEEEEEe
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+ .+-++.+||-|+-++..+
T Consensus 273 --s-AV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 273 --S-AVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred --e-eEEEeccCCCcchhcccc
Confidence 1 266889999999877554
No 359
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.07 E-value=0.021 Score=56.26 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.++.+.|||+||.+++.++.++|+++++++..++..
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999999988654
No 360
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.07 E-value=0.048 Score=58.21 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=36.3
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
..|+++|. +| ..+.|-.. ..+..++||.||++.+-.+.+ ..+.+|+..
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aD-------------K~VI~W~~k 83 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD-------------KSVIIWTSK 83 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCc-------------eeEEEeccc
Confidence 68999999 77 77777766 778899999999997633322 367778765
No 361
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=1.3 Score=41.19 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=34.2
Q ss_pred eeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 279 YTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 279 ~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.++|+ .++.+.+ ...+...+..+.|||...+++..+ ....|-+-|+.+.
T Consensus 256 ~lydi---rg~r~iq~f~phsadir~vrfsp~a~yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 256 MLYDI---RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred EEEEe---eCCceeeeeCCCccceeEEEeCCCceEEEEec----ccceEEEeecccc
Confidence 35566 5666554 456678889999999988887654 2345777777763
No 362
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.02 E-value=0.7 Score=50.93 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCeeeeecCCCC--CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp 96 (706)
+...++.+.... .....++.|+||+.+|+.. .....||+... ++..+.+..... ...+.|.+
T Consensus 329 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~---------~~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d~ 392 (573)
T PRK13614 329 GQISPLPDIQSVAGLGPASPAESPVSQTVAFLN---------GSRTTLYTVSP-GQPARALTSGST------LTRPSFSP 392 (573)
T ss_pred CCcccCCCccCcCcccccceeecCCCceEEEec---------CCCcEEEEecC-CCcceeeecCCC------ccCCcccC
Confidence 445555444321 2567889999999999974 22358887765 445555543332 66788988
Q ss_pred CCcEEEE
Q 005240 97 NSTLLIF 103 (706)
Q Consensus 97 Dg~~l~~ 103 (706)
+| ++..
T Consensus 393 ~g-~vWt 398 (573)
T PRK13614 393 QD-WVWT 398 (573)
T ss_pred CC-CEEE
Confidence 88 4443
No 363
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.01 E-value=0.44 Score=48.07 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=76.3
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc-cCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~ 233 (706)
..+.++++ +| ....|.-...+.++.|+-||.+|+-+..+ ..|.+||.-.+++..-. .+.++.
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~v~e~~~heG~k-- 218 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTVVSEGVAHEGAK-- 218 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcEeeecccccCCC--
Confidence 57888898 67 45556634788899999999999866654 47999998866544332 222211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~ 311 (706)
.....|-.+|+ |+-+- ...... ..+-+||.+.+ .++-.+. ..+..+--|-|-+|.+
T Consensus 219 ----------~~Raifl~~g~--i~tTG-fsr~se-------Rq~aLwdp~nl--~eP~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 219 ----------PARAIFLASGK--IFTTG-FSRMSE-------RQIALWDPNNL--EEPIALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred ----------cceeEEeccCc--eeeec-cccccc-------cceeccCcccc--cCcceeEEeccCCceEEeeecCCCC
Confidence 11445777765 33221 111111 13556665322 2332222 2334455667888877
Q ss_pred eEEEEeeccccceEEEEEc
Q 005240 312 ALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d 330 (706)
.||... ..++..+-|.+.
T Consensus 277 ivYl~G-KGD~~IRYyEit 294 (472)
T KOG0303|consen 277 IVYLCG-KGDSSIRYFEIT 294 (472)
T ss_pred EEEEEe-cCCcceEEEEec
Confidence 666553 333455555554
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=1.7 Score=42.34 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=71.3
Q ss_pred ceEEEEccCC--CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..-+++|.++ ++..+... ..+.--.|||||++|+-+.++.... ..-|-+||.. ....++...+...
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~--------rGViGvYd~r-~~fqrvgE~~t~G 161 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN--------RGVIGVYDAR-EGFQRVGEFSTHG 161 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC--------CceEEEEecc-cccceecccccCC
Confidence 4567778855 55555443 3455667999999998777654321 1357788876 2233433322211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC---------CccccCccceeeeecCCCCCCCCc-eE--Eee--c
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD---------ANVEVSPRDIIYTQPAEPAEGEKP-EI--LHK--L 297 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~---------~~~~~~~~~~l~~~d~~~~~~~~~-~~--l~~--~ 297 (706)
-|+..+.|.+||+. |+.. +++- +-+...+...+.++|. .+|++ ++ |.. .
T Consensus 162 ----------iGpHev~lm~DGrt-lvva---nGGIethpdfgR~~lNldsMePSlvlld~---atG~liekh~Lp~~l~ 224 (366)
T COG3490 162 ----------IGPHEVTLMADGRT-LVVA---NGGIETHPDFGRTELNLDSMEPSLVLLDA---ATGNLIEKHTLPASLR 224 (366)
T ss_pred ----------cCcceeEEecCCcE-EEEe---CCceecccccCccccchhhcCccEEEEec---cccchhhhccCchhhh
Confidence 23457899999997 5533 2221 1111122334666664 34432 22 331 1
Q ss_pred ccccccceecCCCceEE
Q 005240 298 DLRFRSVSWCDDSLALV 314 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~ 314 (706)
...+..+..-+||+.++
T Consensus 225 ~lSiRHld~g~dgtvwf 241 (366)
T COG3490 225 QLSIRHLDIGRDGTVWF 241 (366)
T ss_pred hcceeeeeeCCCCcEEE
Confidence 23455666777887544
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=1.7 Score=42.32 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCeeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSp 96 (706)
|+..--+.+|.- ...++++|--. -++|.+. -..-.++.|..+.+.-++ .....+ ..+..=.|||
T Consensus 58 Gk~v~~~~lpaR--~Hgi~~~p~~~ravafARr---------PGtf~~vfD~~~~~~pv~~~s~~~R---HfyGHGvfs~ 123 (366)
T COG3490 58 GKIVFATALPAR--GHGIAFHPALPRAVAFARR---------PGTFAMVFDPNGAQEPVTLVSQEGR---HFYGHGVFSP 123 (366)
T ss_pred Cceeeeeecccc--cCCeecCCCCcceEEEEec---------CCceEEEECCCCCcCcEEEecccCc---eeecccccCC
Confidence 343333334443 77889999655 4556542 235567778777654333 222211 1133458999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC--
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-- 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-- 174 (706)
||++||-+-++... +.+-|=++|.+-..+++.+.
T Consensus 124 dG~~LYATEndfd~--------------------------------------------~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 124 DGRLLYATENDFDP--------------------------------------------NRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCcEEEeecCCCCC--------------------------------------------CCceEEEEecccccceeccccc
Confidence 99998866322110 22555566664333333322
Q ss_pred --ceEeeeeeCCCCcEEEEEee
Q 005240 175 --AVYTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 175 --~~~~~~~~SpDG~~i~~~~~ 194 (706)
-....+.|.+||+.|+....
T Consensus 160 ~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCC
Confidence 35568899999999986554
No 366
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.99 E-value=0.51 Score=44.32 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=74.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
-+..+++.-||++..... ....|-++++..|...+-..+.+. .+.+.+-+.|...++...
T Consensus 19 aV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~G------ 78 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASCG------ 78 (307)
T ss_pred ceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeecCCCc----eeeeccccccccccccCC------
Confidence 477889999999886643 235666778877776554433332 256667777776665321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+...++++|+ +| ..+++-.. +.+..+.|..+..-
T Consensus 79 -------------------------------------------gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 79 -------------------------------------------GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred -------------------------------------------CCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 1257888999 78 56666655 78889999877765
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (706)
|+-.+. ...+.+||..+..
T Consensus 116 v~Sgsf-------------D~s~r~wDCRS~s 134 (307)
T KOG0316|consen 116 VASGSF-------------DSSVRLWDCRSRS 134 (307)
T ss_pred EEeccc-------------cceeEEEEcccCC
Confidence 543333 2578889887543
No 367
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=1.6 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
.+..+.|+.||..+.+.. ....+|++|+.+ .+|..+-+.
T Consensus 230 svTal~F~d~gL~~aVGt----s~G~v~iyDLRa--~~pl~~kdh 268 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGT----STGSVLIYDLRA--SKPLLVKDH 268 (703)
T ss_pred cceEEEecCCceeEEeec----cCCcEEEEEccc--CCceeeccc
Confidence 477888999999998865 345799999988 345555343
No 368
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.96 E-value=0.26 Score=47.69 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=89.3
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
--.|+|+|..+ -++--.-++++. +..-+|||=.. +-..+.. ....++-+.|++.|.......+..
T Consensus 123 DhtlKVWDtnT----lQ~a~~F~me~~--VYshamSp~a~sHcLiA~g--------tr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 123 DHTLKVWDTNT----LQEAVDFKMEGK--VYSHAMSPMAMSHCLIAAG--------TRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred cceEEEeeccc----ceeeEEeecCce--eehhhcChhhhcceEEEEe--------cCCCcEEEEeccCCcceeeecccc
Confidence 34577888766 333333223433 77778998544 2222221 334788889999998766654433
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ++-.+.|||-.++++++...++... .+.. ....+-+-.+
T Consensus 189 ~----~vlaV~Wsp~~e~vLatgsaDg~ir----------------------lWDi--------------Rrasgcf~~l 228 (397)
T KOG4283|consen 189 D----GVLAVEWSPSSEWVLATGSADGAIR----------------------LWDI--------------RRASGCFRVL 228 (397)
T ss_pred C----ceEEEEeccCceeEEEecCCCceEE----------------------EEEe--------------ecccceeEEe
Confidence 2 3778999999999887743322110 0000 0011345555
Q ss_pred cc-CC-CceecC-CC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE
Q 005240 163 SL-DG-TAKDFG-TP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (706)
Q Consensus 163 ~l-~g-~~~~lt-~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (706)
|. ++ .+..+. .. +.+..++|+.||.+++..... .++.+|+...+.-.
T Consensus 229 D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 229 DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGRNT 281 (397)
T ss_pred ecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCccc
Confidence 66 43 222222 22 577899999999999865543 47889998865433
No 369
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.96 E-value=1.1 Score=43.91 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=83.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
+.|.++++..++..-. +.... ....+-...||-||.+++.. ....++-++|+.+++..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~g----------~~Dk~~k~wDL~S~Q~~~v~~Hd~p- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFSG----------GCDKQAKLWDLASGQVSQVAAHDAP- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEee----------ccCCceEEEEccCCCeeeeeecccc-
Confidence 4567777766422222 11111 22247788999999887543 2335677779999999999766554
Q ss_pred ccccccceEEecCCc--EEEEEecCCCCCC-CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 85 LNAVFGSFVWVNNST--LLIFTIPSSRRDP-PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~--~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
++.+.|-+... .|+-.+-++.-.+ +.....+.. ......|.|..-..+++- -......+|-+
T Consensus 116 ----vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~--------t~~LPeRvYa~Dv~~pm~---vVata~r~i~v 180 (347)
T KOG0647|consen 116 ----VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA--------TLQLPERVYAADVLYPMA---VVATAERHIAV 180 (347)
T ss_pred ----eeEEEEecCCCcceeEecccccceeecccCCCCeee--------eeeccceeeehhccCcee---EEEecCCcEEE
Confidence 88899976554 4443332211100 000000000 000111222211111110 00114467888
Q ss_pred EccC-C--CceecCCC--ceEeeeeeCCCCcEEEEEeec
Q 005240 162 GSLD-G--TAKDFGTP--AVYTAVEPSPDQKYVLITSMH 195 (706)
Q Consensus 162 ~~l~-g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~ 195 (706)
++|. + +.+++..+ ...++++.-+|.+..+..+..
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 8884 3 44445444 566788877877766666654
No 370
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.95 E-value=1.8 Score=42.32 Aligned_cols=123 Identities=18% Similarity=0.310 Sum_probs=73.6
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce--eecccCCCccccccccceEEecCCc
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
-.|...|++ .++.++|||.-+.++-+.+= ++...+|.+... |.. +-.-...+ .+-...||.||.
T Consensus 20 ~ev~~pP~D-sIS~l~FSP~~~~~~~A~SW-------D~tVR~wevq~~-g~~~~ka~~~~~~-----PvL~v~Wsddgs 85 (347)
T KOG0647|consen 20 YEVPNPPED-SISALAFSPQADNLLAAGSW-------DGTVRIWEVQNS-GQLVPKAQQSHDG-----PVLDVCWSDDGS 85 (347)
T ss_pred eecCCCccc-chheeEeccccCceEEeccc-------CCceEEEEEecC-CcccchhhhccCC-----CeEEEEEccCCc
Confidence 334444444 68899999944444433321 556777776644 322 21222222 267889999998
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~ 177 (706)
.++...- ..++-++|| +|++.++... +.+
T Consensus 86 kVf~g~~-------------------------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 86 KVFSGGC-------------------------------------------------DKQAKLWDLASGQVSQVAAHDAPV 116 (347)
T ss_pred eEEeecc-------------------------------------------------CCceEEEEccCCCeeeeeecccce
Confidence 7654421 156777899 7788888777 677
Q ss_pred eeeeeCCCCcE-EEEEeeccCcccccccccccceEEEEecCCC
Q 005240 178 TAVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 178 ~~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
..+.|-+...+ ++.+.. + ...|..||....
T Consensus 117 kt~~wv~~~~~~cl~TGS-----W-------DKTlKfWD~R~~ 147 (347)
T KOG0647|consen 117 KTCHWVPGMNYQCLVTGS-----W-------DKTLKFWDTRSS 147 (347)
T ss_pred eEEEEecCCCcceeEecc-----c-------ccceeecccCCC
Confidence 88887766652 222221 1 247888887744
No 371
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=95.94 E-value=0.97 Score=44.51 Aligned_cols=102 Identities=12% Similarity=0.230 Sum_probs=63.8
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe----eEEcccCCCCCCCCcccCccCCCCcceeee
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s 250 (706)
..+..-+|++|+..|++.... .++.+|...+.. ...|..++.. +..+.|+
T Consensus 11 ~pitchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~htls~Hd~~-------------vtgvdWa 64 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHTLSEHDKI-------------VTGVDWA 64 (361)
T ss_pred CceeeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceeceehhhhCcc-------------eeEEeec
Confidence 356788999999999987654 377888777655 2223333221 2257999
Q ss_pred cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEeecccccccceecCCCceEEEEe
Q 005240 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
|..+. |+-... + ++ -|++... ++++-+ .|...++....+.|+|....|+..+
T Consensus 65 p~snr-Ivtcs~-d----rn-------ayVw~~~--~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS 119 (361)
T KOG1523|consen 65 PKSNR-IVTCSH-D----RN-------AYVWTQP--SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS 119 (361)
T ss_pred CCCCc-eeEccC-C----CC-------ccccccC--CCCeeccceeEEEeccceeeEeecCcCceEEecc
Confidence 99987 664421 1 11 2333321 333322 3456788888999999988887754
No 372
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=4.1 Score=45.92 Aligned_cols=209 Identities=11% Similarity=0.181 Sum_probs=105.3
Q ss_pred EEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC--
Q 005240 159 LVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI-- 233 (706)
Q Consensus 159 l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~-- 233 (706)
|-+++- ++ -...||.. .++.+..|.|....|+-.+-+ +.|.+||+.|-..+....+...+..
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLD-------------QTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD-------------QTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEEEeccc-------------ceEEEEeecchhccCCCCCCchhhhhc
Confidence 333444 33 44556655 688999999988888755544 4799999986544444333111110
Q ss_pred --------C-------cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc--eEEee
Q 005240 234 --------P-------VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHK 296 (706)
Q Consensus 234 --------p-------~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~ 296 (706)
+ ........|+..++|.|.-. |+ + ++++.+.. .+|+++. +..- .....
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--li-V---SG~DDRqV-----KlWrmne----tKaWEvDtcrg 248 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LI-V---SGADDRQV-----KLWRMNE----TKAWEVDTCRG 248 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcc--eE-E---ecCCccee-----eEEEecc----ccceeehhhhc
Confidence 0 00111122344555666433 22 2 23333321 3566553 2221 22234
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec---CcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
+-..++.+-|.|....|+..+ ++...++|-++-.+ ..+.+. ..+.-+...|...-++.-.|+-.++|...+
T Consensus 249 H~nnVssvlfhp~q~lIlSns--EDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNS--EDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred ccCCcceEEecCccceeEecC--CCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 556778888999766666543 33455666555443 233331 112222234444445556777777777654
Q ss_pred cC-----CcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 374 EN-----DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 374 ~~-----~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
.. .++...|++ ...|+.+|+.+.+-..+
T Consensus 323 Erpa~~v~~n~LfYvk---------d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 323 ERPAYAVNGNGLFYVK---------DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred cCceEEEcCCEEEEEc---------cceEEeeecccccccee
Confidence 31 223334433 12466677766443333
No 373
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.88 E-value=1 Score=44.19 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=70.5
Q ss_pred ceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~ 233 (706)
..|-+++| .|+...+..- .....+.|+|.|.+.++...+ .|-+|-++...+ +.+....
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~----- 209 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK----- 209 (362)
T ss_pred ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc-----
Confidence 35666787 7743333222 445569999999988766543 466666664322 1111110
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccccee--cCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW--CDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~w--spDg~ 311 (706)
....+.|- ++.. |+.- ++. ..+-.+|-+ +...+..+..+..++-++.. .|++.
T Consensus 210 ---------r~l~~~~l-~~~~-L~vG-----~d~-------~~i~~~D~d--s~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 210 ---------RILCATFL-DGSE-LLVG-----GDN-------EWISLKDTD--SDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred ---------cceeeeec-CCce-EEEe-----cCC-------ceEEEeccC--CCccceeeecchhheeeeEEEecCCce
Confidence 00011222 1222 3211 111 124455542 12233444555666666553 35677
Q ss_pred eEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
+|+..+ .++...+|.++.++.+ .|.+|.+
T Consensus 265 ~lvTaS--SDG~I~vWd~~~~~k~-~~~~l~e 293 (362)
T KOG0294|consen 265 YLVTAS--SDGFIKVWDIDMETKK-RPTLLAE 293 (362)
T ss_pred EEEEec--cCceEEEEEccccccC-CcceeEE
Confidence 776654 3367888888888753 4555533
No 374
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=95.86 E-value=0.019 Score=59.02 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--ceeEEEeccCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 636 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~--~~~a~v~~~~~ 636 (706)
+-.-+...+.+|.+..-+++++|-|+|||+||++|-.+.-+... ++....+..|.
T Consensus 130 vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 130 VGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 34455566777775545789999999999999999999987755 67766666654
No 375
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.80 E-value=0.97 Score=46.62 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=123.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|-++|+.+. ...+.+-+...+....++...|||-..--.|+++ ....|-..|++++.-..+..... .
T Consensus 211 ~VG~Wn~~~~-~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS---------yDGtiR~~D~~~~i~e~v~s~~~--d 278 (498)
T KOG4328|consen 211 QVGLWNFGTQ-EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS---------YDGTIRLQDFEGNISEEVLSLDT--D 278 (498)
T ss_pred cEEEEecCCC-CCccCceEEeccCCccccceEecCCChhheeeec---------cCceeeeeeecchhhHHHhhcCc--c
Confidence 4667777321 1123344444566668999999996665556653 34678888998877665543321 1
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
+..+.++.++.+...++|... .+.+.++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~~-------------------------------------------------~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGDN-------------------------------------------------VGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEeec-------------------------------------------------ccceEEEEee
Confidence 223556777777766666531 134445555
Q ss_pred -CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeE-EcccCCCCCCCCcccC
Q 005240 165 -DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVR-ELCDLPPAEDIPVCYN 238 (706)
Q Consensus 165 -~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~l~~~~~~~~~p~~~~ 238 (706)
+| +...+.-. .-+..+++.|--.+++.++..+ ..+.+||+- .++.. .|...+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D------------~T~kIWD~R~l~~K~sp~lst~~H--------- 368 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLD------------QTAKIWDLRQLRGKASPFLSTLPH--------- 368 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeecccC------------cceeeeehhhhcCCCCcceecccc---------
Confidence 44 33333333 4677899999988887776553 357788875 22211 1111111
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CCc-eEEeec--c-c--ccccceecCCCc
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKP-EILHKL--D-L--RFRSVSWCDDSL 311 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~-~~l~~~--~-~--~~~~~~wspDg~ 311 (706)
...+....|||++.. |+... .+ . .|.++|..-+.. -++ ..+... . . ......|.||-.
T Consensus 369 --rrsV~sAyFSPs~gt-l~TT~-~D---~--------~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 369 --RRSVNSAYFSPSGGT-LLTTC-QD---N--------EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred --cceeeeeEEcCCCCc-eEeec-cC---C--------ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 012346789999987 65432 11 1 244544300000 011 122211 1 1 123567999988
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.|+... .. ..|=++|..++
T Consensus 434 li~vg~-~~---r~IDv~~~~~~ 452 (498)
T KOG4328|consen 434 LIVVGR-YP---RPIDVFDGNGG 452 (498)
T ss_pred EEEEec-cC---cceeEEcCCCC
Confidence 777653 22 23667776663
No 376
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.97 Score=48.21 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=61.7
Q ss_pred ceEEEEccCCCceecCC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCC
Q 005240 157 AQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~ 232 (706)
..+++.+|.....+... . +.+....|.|---++++.+. ..|.+||+.... +++|..+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--------------~~vRiYdL~kqelvKkL~tg~---- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--------------RSVRIYDLSKQELVKKLLTGS---- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--------------cceEEEehhHHHHHHHHhcCC----
Confidence 56777777442222222 1 67788899999888865543 368899987432 22332221
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
..+..++.+|.|.. |+.... ...++.+|+ .+.+.-.+.|-.+...+.++++++---
T Consensus 608 ---------kwiS~msihp~GDn-li~gs~------------d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 608 ---------KWISSMSIHPNGDN-LILGSY------------DKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred ---------eeeeeeeecCCCCe-EEEecC------------CCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccc
Confidence 11235677887776 443311 113555566 223333344544555566666655433
No 377
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.74 E-value=0.04 Score=54.62 Aligned_cols=155 Identities=13% Similarity=0.183 Sum_probs=93.0
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-ecccCCCcc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~ 84 (706)
|.|+|... ..+++++.-+. .+...+++|--..|.-+. .....|.++|+.++.+. .++-...
T Consensus 169 i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~---------~sDrsIvLyD~R~~~Pl~KVi~~mR-- 231 (433)
T KOG0268|consen 169 IDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASC---------ASDRSIVLYDLRQASPLKKVILTMR-- 231 (433)
T ss_pred eeeccccc------CCccceeecCCCceeEEecCCCcchheeee---------ccCCceEEEecccCCccceeeeecc--
Confidence 55566533 33444444443 567889999888776654 23468999998876543 3332221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|+|.+ +.|++.. ....||.+|.
T Consensus 232 ----TN~IswnPea--fnF~~a~-----------------------------------------------ED~nlY~~Dm 258 (433)
T KOG0268|consen 232 ----TNTICWNPEA--FNFVAAN-----------------------------------------------EDHNLYTYDM 258 (433)
T ss_pred ----ccceecCccc--cceeecc-----------------------------------------------ccccceehhh
Confidence 3578999943 4444311 1156888887
Q ss_pred CC--CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
-. .+..+-.+ ..+..++|||.|+.++-.+.+ ..|.++.+..+.-|.+....-.
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-------------ksIRIf~~~~~~SRdiYhtkRM---------- 315 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-------------KSIRIFPVNHGHSRDIYHTKRM---------- 315 (433)
T ss_pred hhhcccchhhcccceeEEEeccCCCcchhcccccc-------------ceEEEeecCCCcchhhhhHhhh----------
Confidence 43 33333333 578899999999998754443 4788888886654443322110
Q ss_pred CCCCcceeeecCCCc
Q 005240 241 REGMRSISWRADKPS 255 (706)
Q Consensus 241 ~~g~~~~~~spdg~~ 255 (706)
..+..+.||.|.+.
T Consensus 316 -q~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 316 -QHVFCVKYSMDSKY 329 (433)
T ss_pred -heeeEEEEeccccE
Confidence 11336789999885
No 378
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=95.74 E-value=0.36 Score=47.37 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=39.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEe
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+..-+|++|+..||...+ ..+|.++...+... +++-....+ ...+..+.|+|.+.+|+..+
T Consensus 13 itchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred eeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEcc
Confidence 667799999999999754 35677776666662 222111111 12266789999998877653
No 379
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.72 E-value=2.5 Score=42.33 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|+|.||++ |+.+.- ++.. ..+..+++|+---+| |.. ....++-.+|++..+..+-.++.-
T Consensus 173 rtikIwDlat----g~Lklt--ltGhi~~vr~vavS~rHpYl-Fs~---------gedk~VKCwDLe~nkvIR~YhGHl- 235 (460)
T KOG0285|consen 173 RTIKIWDLAT----GQLKLT--LTGHIETVRGVAVSKRHPYL-FSA---------GEDKQVKCWDLEYNKVIRHYHGHL- 235 (460)
T ss_pred ceeEEEEccc----CeEEEe--ecchhheeeeeeecccCceE-EEe---------cCCCeeEEEechhhhhHHHhcccc-
Confidence 4689999988 766542 3422 368899999988888 544 334688888998887555433221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
. ++..+...|--+.|+..+.+ ..+-++|
T Consensus 236 --S-~V~~L~lhPTldvl~t~grD-------------------------------------------------st~RvWD 263 (460)
T KOG0285|consen 236 --S-GVYCLDLHPTLDVLVTGGRD-------------------------------------------------STIRVWD 263 (460)
T ss_pred --c-eeEEEeccccceeEEecCCc-------------------------------------------------ceEEEee
Confidence 1 25566777777766644211 3444456
Q ss_pred c-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCC
Q 005240 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLP 228 (706)
Q Consensus 164 l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~ 228 (706)
+ +. .+..|... ..+..+..-|-.-+|+-.+.+ ..|.+||+- |+....|+...
T Consensus 264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred ecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCceeEeeeccc
Confidence 6 32 44445444 556666666644456544443 479999997 55566666654
No 380
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.70 E-value=0.18 Score=52.22 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=88.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|-|+.+.+ +-+++.++ .+.+..+.-+++||-.+.+.-+.. ....+.+||+.+..+.-=. ...+
T Consensus 144 diiih~~~t---~~~tt~f~-~~sgqsvRll~ys~skr~lL~~as---------d~G~VtlwDv~g~sp~~~~-~~~H-- 207 (673)
T KOG4378|consen 144 DIIIHGTKT---KQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIAS---------DKGAVTLWDVQGMSPIFHA-SEAH-- 207 (673)
T ss_pred cEEEEeccc---Ccccccee-cCCCCeEEEeecccccceeeEeec---------cCCeEEEEeccCCCcccch-hhhc--
Confidence 467777766 13444444 556667788999999999987663 3355666677665432111 1111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
.+....+.+||-.+.|+...- ....|+++|..
T Consensus 208 sAP~~gicfspsne~l~vsVG------------------------------------------------~Dkki~~yD~~ 239 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVG------------------------------------------------YDKKINIYDIR 239 (673)
T ss_pred cCCcCcceecCCccceEEEec------------------------------------------------ccceEEEeecc
Confidence 112467899998887666531 11468888874
Q ss_pred C--CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 166 G--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 166 g--~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
. ....|+.......++|+|+|.+|+....++ +|+.||+.+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G-------------~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKG-------------ELIAYDMRST 282 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCCc-------------eEEEEecccC
Confidence 3 445666556778999999999998765543 7888998754
No 381
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.69 E-value=0.65 Score=53.73 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+.++.+--|+..|.++ .....|.++|+++....-+..... ++....||||++++++.+.
T Consensus 70 ~i~s~~fl~d~~~i~v~----------~~~G~iilvd~et~~~eivg~vd~-----GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVI----------TALGDIILVDPETLELEIVGNVDN-----GISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEE----------ecCCcEEEEcccccceeeeeeccC-----ceEEEeecCCCcEEEEEeC
Confidence 34455666666666554 334677788888877776654333 4888999999999998753
No 382
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.65 E-value=0.71 Score=47.56 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=38.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+...+.||||++||+. .....|.+++.++.++.+.+.+... .+.++++--.-..||..+
T Consensus 204 eil~~avS~Dgkylatg----------g~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----------GRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYSAS 263 (479)
T ss_pred eeEEEEEcCCCcEEEec----------CCCceEEEecCcccchhhccccccc----ceeeeeeecCccceeeee
Confidence 35568899999999994 2234556889999998887533322 255666654334455443
No 383
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.45 Score=49.28 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=94.2
Q ss_pred eeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCcc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~ 84 (706)
+.+.++++ +.. |+. +.. ...+....|||-..+|+++... + ..|-++|+.....+.+. +++.
T Consensus 135 ~k~~d~s~----a~v-~~~-l~~htDYVR~g~~~~~~~hivvtGsY-------D--g~vrl~DtR~~~~~v~elnhg~-- 197 (487)
T KOG0310|consen 135 VKYWDLST----AYV-QAE-LSGHTDYVRCGDISPANDHIVVTGSY-------D--GKVRLWDTRSLTSRVVELNHGC-- 197 (487)
T ss_pred EEEEEcCC----cEE-EEE-ecCCcceeEeeccccCCCeEEEecCC-------C--ceEEEEEeccCCceeEEecCCC--
Confidence 45666755 443 433 332 2368889999999999887643 3 44555555444333333 2222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+.++.+-|.|..|+.. +...+-+||+
T Consensus 198 ---pVe~vl~lpsgs~iasA--------------------------------------------------gGn~vkVWDl 224 (487)
T KOG0310|consen 198 ---PVESVLALPSGSLIASA--------------------------------------------------GGNSVKVWDL 224 (487)
T ss_pred ---ceeeEEEcCCCCEEEEc--------------------------------------------------CCCeEEEEEe
Confidence 27788888999887754 1257888899
Q ss_pred C-C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 D-G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~-g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
. | .+....+. -.++++++..|+++|+-.+-++ .+.+|+...=++..=...+
T Consensus 225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~Kvv~s~~~~------------ 279 (487)
T KOG0310|consen 225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNYKVVHSWKYP------------ 279 (487)
T ss_pred cCCceehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEEccceEEEEeeecc------------
Confidence 4 5 23333334 6789999999999997665543 6777875543332211221
Q ss_pred CCCCcceeeecCCCc
Q 005240 241 REGMRSISWRADKPS 255 (706)
Q Consensus 241 ~~g~~~~~~spdg~~ 255 (706)
..+-+++.|||++.
T Consensus 280 -~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 280 -GPVLSIAVSPDDQT 293 (487)
T ss_pred -cceeeEEecCCCce
Confidence 12447788888775
No 384
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.64 E-value=2.5 Score=41.52 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=77.0
Q ss_pred CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCc
Q 005240 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
...++...|+. .++.++|||.+..|+.++= + ..|.+++....+.++....... +-...|.++.+
T Consensus 4 ~~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~ 67 (323)
T KOG1036|consen 4 NEFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGAP-----LLDCAFADEST 67 (323)
T ss_pred cccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCCc-----eeeeeccCCce
Confidence 34445544444 5889999999999887651 2 4666677777777666554443 55677777655
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~ 177 (706)
+++.. -.++|-++|+ +|+..++..+ ..+
T Consensus 68 -~~~G~-------------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i 97 (323)
T KOG1036|consen 68 -IVTGG-------------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGI 97 (323)
T ss_pred -EEEec-------------------------------------------------cCceEEEEEecCCcceeeccCCCce
Confidence 34331 1268889999 5566666655 778
Q ss_pred eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..+..++--..|+-.+= ...|.+||.-.
T Consensus 98 ~ci~~~~~~~~vIsgsW-------------D~~ik~wD~R~ 125 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSW-------------DKTIKFWDPRN 125 (323)
T ss_pred EEEEeeccCCeEEEccc-------------CccEEEEeccc
Confidence 88888875444442221 24788898764
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=1.7 Score=42.65 Aligned_cols=58 Identities=7% Similarity=0.116 Sum_probs=39.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~ 102 (706)
.++..+|+||.+.|..+. +...+|.-++.+|.-.+.+.-..- .. ...+.|.-+|++.+
T Consensus 87 nvS~LTynp~~rtLFav~---------n~p~~iVElt~~GdlirtiPL~g~---~D-pE~Ieyig~n~fvi 144 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVT---------NKPAAIVELTKEGDLIRTIPLTGF---SD-PETIEYIGGNQFVI 144 (316)
T ss_pred cccceeeCCCcceEEEec---------CCCceEEEEecCCceEEEeccccc---CC-hhHeEEecCCEEEE
Confidence 389999999999995543 455788888887776666642111 11 56778888887543
No 386
>COG3150 Predicted esterase [General function prediction only]
Probab=95.60 E-value=0.13 Score=45.59 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=22.6
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
..+|.|-|.|||.|.|++.+. -+++++
T Consensus 60 ~p~ivGssLGGY~At~l~~~~--Girav~ 86 (191)
T COG3150 60 SPLIVGSSLGGYYATWLGFLC--GIRAVV 86 (191)
T ss_pred CceEEeecchHHHHHHHHHHh--CChhhh
Confidence 399999999999999999998 345544
No 387
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=95.58 E-value=1.4 Score=44.93 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCC-------------CC-
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTL-------------TP- 643 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~-------------~~- 643 (706)
...++.-+.+++.++.+++. .+|+|+|+..|+++++.++...+. .+.+.|.+++-..... .|
T Consensus 173 ~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~~n~~l~~~la~l~iPv 249 (310)
T PF12048_consen 173 EERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPDRNPALAEQLAQLKIPV 249 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcchhhhhHHHHhhccCCCE
Confidence 34567778888888888753 569999999999999999988854 4788888886432111 01
Q ss_pred ------cc---chHHHHHHHHHhC--CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 644 ------FG---FQAERFFDALKGH--GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 644 ------~~---~~~~~~~~~l~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.. .+.....+.+.++ +..++-+..++..|.... ....+.++|..|++++
T Consensus 250 LDi~~~~~~~~~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 250 LDIYSADNPASQQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred EEEecCCChHHHHHHHHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 00 0001222222222 234666677777775432 2233899999999885
No 388
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=95.50 E-value=0.13 Score=47.46 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHc-CCCCCCcEEEEEechHHHHHHHHH-HhCCCceeEEEeccCCCC
Q 005240 589 AVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLL-AHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 589 ~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~-~~~p~~~~a~v~~~~~~d 638 (706)
.++.|.+. ..+| ..+.+.|||.|+.+++..+ .+...+++++++++|...
T Consensus 42 W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 42 WVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp HHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred HHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 34445443 2244 4699999999999999999 777789999999999754
No 389
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.50 E-value=1.4 Score=49.07 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCeeeeecCCC-C-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-c----eeecccCCCccccccccc
Q 005240 19 GPEKEVHGYPD-G-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E----AKPLFESPDICLNAVFGS 91 (706)
Q Consensus 19 g~~~~i~~~~~-~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~----~~~lt~~~~~~~~~~~~~ 91 (706)
+...++.+... + .....++.|+||+.+|++. .....||+-++.++ + .+.+.... .+..
T Consensus 349 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~---------~~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~ 413 (599)
T PRK13613 349 TDPEPVPGALGSGRVPLRRVAVSRDESRAAGIS---------ADGDSVYVGSLTPGASIGVHSWGVTADG------RLTS 413 (599)
T ss_pred CCcccCCCccCCCCCCccceEEcCCCceEEEEc---------CCCcEEEEeccCCCCccccccceeeccC------cccC
Confidence 44445544322 1 2567899999999999985 23357888765443 3 22333222 1678
Q ss_pred eEEecCCcEEE
Q 005240 92 FVWVNNSTLLI 102 (706)
Q Consensus 92 ~~wSpDg~~l~ 102 (706)
+.|.++| .|.
T Consensus 414 PS~d~~g-~vW 423 (599)
T PRK13613 414 PSWDGRG-DLW 423 (599)
T ss_pred CcCcCCC-CEE
Confidence 8999988 444
No 390
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.45 E-value=3.7 Score=47.94 Aligned_cols=82 Identities=10% Similarity=0.218 Sum_probs=46.3
Q ss_pred eEEEEccCCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCc
Q 005240 158 QLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~ 235 (706)
.+-+++-+|...-..+. +....++|-|.|..|+........ .+|..+.-+|-....+.-....+.
T Consensus 223 kirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd----------~~IvffErNGL~hg~f~l~~p~de--- 289 (1265)
T KOG1920|consen 223 KIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD----------SDIVFFERNGLRHGEFVLPFPLDE--- 289 (1265)
T ss_pred eEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCC----------CcEEEEecCCccccccccCCcccc---
Confidence 34444555544333333 455689999999999877665432 367777777644322211111110
Q ss_pred ccCccCCCCcceeeecCCCceEEE
Q 005240 236 CYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
.-...+.|+.++.- |+.
T Consensus 290 ------~~ve~L~Wns~sdi-LAv 306 (1265)
T KOG1920|consen 290 ------KEVEELAWNSNSDI-LAV 306 (1265)
T ss_pred ------cchheeeecCCCCc-eee
Confidence 00337899999886 554
No 391
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.45 E-value=0.091 Score=56.57 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEec
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
+..+...+.||+|+.||.+... .......|++++...=...+ | .++.+ .+..+.|||||++|+..+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS-----~~~ehAvI~lw~t~~W~~~~~L---~~HsL--TVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKS-----SLKEHAVIRLWNTANWLQVQEL---EGHSL--TVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhh-----CCccceEEEEEeccchhhhhee---cccce--EEEEEEECCCCcEEEEeec
Confidence 3367889999999999988742 11445678999866533333 3 22211 2778999999999887764
No 392
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.41 E-value=2.7 Score=41.46 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=77.6
Q ss_pred ceEEEEccCC--CceecCCC-ceEeeeeeCCCCc--EEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~ 230 (706)
.+|.++|+.. +...|... +.+..+.|.|+-. +|+-.+.+ ..|.+|+++. ..+..+..+.+.
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD-------------G~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD-------------GHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC-------------CcEEEEEcCCeEEeeeecccccc
Confidence 4688888843 55555555 7788899998875 55544333 3788888763 222333333221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg 310 (706)
+..++..|.|+ |+... +++. .+..||+ -.|+.-.+.........+.|+|.|
T Consensus 130 -------------Vt~lsiHPS~K--LALsV---g~D~--------~lr~WNL---V~Gr~a~v~~L~~~at~v~w~~~G 180 (362)
T KOG0294|consen 130 -------------VTDLSIHPSGK--LALSV---GGDQ--------VLRTWNL---VRGRVAFVLNLKNKATLVSWSPQG 180 (362)
T ss_pred -------------cceeEecCCCc--eEEEE---cCCc--------eeeeehh---hcCccceeeccCCcceeeEEcCCC
Confidence 33678889888 55432 2222 3566776 444444444444444558999999
Q ss_pred ceEEEEeeccccceEEEEEcCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
.+++.... ....||.++.+
T Consensus 181 d~F~v~~~---~~i~i~q~d~A 199 (362)
T KOG0294|consen 181 DHFVVSGR---NKIDIYQLDNA 199 (362)
T ss_pred CEEEEEec---cEEEEEecccH
Confidence 98887542 23456666644
No 393
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.40 E-value=0.066 Score=49.64 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=65.0
Q ss_pred hHHHHHHHCCeEEEEcCCC-CcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-
Q 005240 546 TSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA- 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~- 623 (706)
.....|-+.+|..+.+.-+ ...|||.. ..++..+|+..+++++.-.++ ...|.++|||-|..=.++.+++.
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHhcc
Confidence 4455667889988764333 23356653 345568899999998876665 34899999999998888887443
Q ss_pred -CCceeEEEeccCCCCCC
Q 005240 624 -PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 -p~~~~a~v~~~~~~d~~ 640 (706)
|..++|+|+.+|+.|..
T Consensus 130 ~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDRE 147 (299)
T ss_pred chHHHHHHHHhCccchhh
Confidence 56799999999998865
No 394
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.36 E-value=1.5 Score=45.27 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=30.6
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.|....++..+ .++..+||.+.-.- ....+|.+-++..+ ...+.|+++|++|++..
T Consensus 389 i~~sdL~asGS--~~G~vrLW~i~~g~--r~i~~l~~ls~~Gf-----VNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 389 IPGSDLLASGS--WSGCVRLWKIEDGL--RAINLLYSLSLVGF-----VNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCceEEecC--CCCceEEEEecCCc--cccceeeecccccE-----EEEEEEccCCCEEEEec
Confidence 44444333332 34677888886443 23344444443221 12477899999887764
No 395
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.35 E-value=0.21 Score=54.28 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=84.5
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC----
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE---- 569 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~---- 569 (706)
.|...+.+|.++. ++ ++.+-||++.. .+.. .. ....+..-+++||+++..+. |..+.
T Consensus 16 ~i~fev~LP~~WN-gR------~~~~GgGG~~G-----~i~~----~~--~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~ 76 (474)
T PF07519_consen 16 NIRFEVWLPDNWN-GR------FLQVGGGGFAG-----GINY----AD--GKASMATALARGYATASTDS-GHQGSAGSD 76 (474)
T ss_pred eEEEEEECChhhc-cC------eEEECCCeeeC-----cccc----cc--cccccchhhhcCeEEEEecC-CCCCCcccc
Confidence 7888899999764 22 55555554321 1111 00 00012334679999998333 22222
Q ss_pred CCCCCc-----hhhHHHHHHHHHHHHHHHHHcCC-CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 570 GDKLPN-----DRFVEQLVSSAEAAVEEVVRRGV-ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 570 g~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~-id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
...+.. .+|.-..+.+...+.+.|++..| -.|++-...|.|-||-.+++++-++|+.|.++++.+|.+++
T Consensus 77 ~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 77 DASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred cccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 122332 23444557777777888888755 67899999999999999999999999999999999998764
No 396
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=95.24 E-value=0.092 Score=51.23 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=44.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH--- 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~--- 622 (706)
.+++.|...++.|+..... |.+.........+..+.+....|.-. . ...++.++|||+||.+|..+|.+
T Consensus 18 ~la~~l~~~~~~v~~i~~~---~~~~~~~~~~si~~la~~y~~~I~~~---~--~~gp~~L~G~S~Gg~lA~E~A~~Le~ 89 (229)
T PF00975_consen 18 PLARALPDDVIGVYGIEYP---GRGDDEPPPDSIEELASRYAEAIRAR---Q--PEGPYVLAGWSFGGILAFEMARQLEE 89 (229)
T ss_dssp HHHHHHTTTEEEEEEECST---TSCTTSHEESSHHHHHHHHHHHHHHH---T--SSSSEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEEecC---CCCCCCCCCCCHHHHHHHHHHHhhhh---C--CCCCeeehccCccHHHHHHHHHHHHH
Confidence 4455555444666553332 22212122233455555444443322 1 11389999999999999888843
Q ss_pred CCCceeEEEeccC
Q 005240 623 APHLFCCGIARSG 635 (706)
Q Consensus 623 ~p~~~~a~v~~~~ 635 (706)
....+..+++..+
T Consensus 90 ~G~~v~~l~liD~ 102 (229)
T PF00975_consen 90 AGEEVSRLILIDS 102 (229)
T ss_dssp TT-SESEEEEESC
T ss_pred hhhccCceEEecC
Confidence 2345777776664
No 397
>PRK13615 lipoprotein LpqB; Provisional
Probab=95.19 E-value=1.3 Score=48.84 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=81.0
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...++.|+||+.+|++.. ...||+-... +..+.+.... ....+.|.++| ++....+. .
T Consensus 336 ~~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~------~Lt~PS~d~~g-~vWtv~~g--~-- 393 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRP------GLVAPSLDAQG-YVWSTPAS--D-- 393 (557)
T ss_pred cccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCC------ccccCcCcCCC-CEEEEeCC--C--
Confidence 367899999999999742 2366665543 4555554322 16678999998 45533211 0
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC----ceEeeeeeCCCCcE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AVYTAVEPSPDQKY 188 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~----~~~~~~~~SpDG~~ 188 (706)
...+.....+|++..+... ..+..+.+|+||-+
T Consensus 394 -------------------------------------------~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R 430 (557)
T PRK13615 394 -------------------------------------------PRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGAR 430 (557)
T ss_pred -------------------------------------------ceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccE
Confidence 0233333334544333222 47889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEec--CCCeeEEc-ccCC-C-CCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTT--DGKLVREL-CDLP-P-AEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l-~~~~-~-~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
+++...... ..+|++.-+ +++..+.| +... . ... .....+.|..++. |+.+.
T Consensus 431 ~Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p~~l~~~l---------~~v~sl~W~~~~~--laVl~ 487 (557)
T PRK13615 431 VLVQLETGA----------GPQLLVASIVRDGGVPTSLTTTPLELLASP---------GTPLDATWVDELD--VATLT 487 (557)
T ss_pred EEEEEecCC----------CCEEEEEEEEeCCCcceEeeeccEEcccCc---------CcceeeEEcCCCE--EEEEe
Confidence 998765432 124444222 34444555 3321 0 000 1134789999887 66564
No 398
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.18 E-value=3 Score=40.69 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 226 (706)
..-+.++||||+..||+....+ .|.++|+.|.+...+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G-------------~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTG-------------TIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCCC-------------eEEEEecccceeEEcCc
Confidence 3456889999999999987653 78899999877665543
No 399
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.12 E-value=0.68 Score=48.76 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE-cCCCCcCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEG 570 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~-~~~~~~~g~g 570 (706)
+.++-. .+-|-++. .|+.||..|= +.. -+| ...-+|.++|.--+. .+.|-..|
T Consensus 275 reEi~y-YFnPGD~K------PPL~VYFSGy-----------R~a-EGF-----Egy~MMk~Lg~PfLL~~DpRleGG-- 328 (511)
T TIGR03712 275 RQEFIY-YFNPGDFK------PPLNVYFSGY-----------RPA-EGF-----EGYFMMKRLGAPFLLIGDPRLEGG-- 328 (511)
T ss_pred CCeeEE-ecCCcCCC------CCeEEeeccC-----------ccc-Ccc-----hhHHHHHhcCCCeEEeeccccccc--
Confidence 445543 34466542 5999998762 111 112 223345667754432 33332212
Q ss_pred CCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 571 DKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 571 ~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.|. ...+-+.+.+=|..++++ .++ +.+.+.+.|.|||.+-|++.++.- .-+|+|..-|+.+
T Consensus 329 -aFYlGs~eyE~~I~~~I~~~L~~---LgF-~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 329 -AFYLGSDEYEQGIINVIQEKLDY---LGF-DHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred -eeeeCcHHHHHHHHHHHHHHHHH---hCC-CHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 333 123333333333333333 455 778999999999999999999875 2378888888765
No 400
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.15 Score=47.02 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 548 SLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 548 ~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
...-.+.||-|+..|....+-+-+...+ ..+....++-+..+..+++. ...+..|++.-|||||++++-++-+.|+
T Consensus 137 i~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 137 IKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 4445678998776333211111111111 11222233333333333332 2456789999999999999999999876
No 401
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.2 Score=50.57 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe----EEEEcCCCCc-CCCCCCCCchhhHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF----AVLAGPSIPI-IGEGDKLPNDRFVEQLVSSAEA 588 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~----~v~~~~~~~~-~g~g~~~~~~~~~~~~~~D~~~ 588 (706)
-++|++||=. ++|..--+..+|.....|+ +|+..+.+++ .||. ..+..-+....++..
T Consensus 117 ~vlvFvHGfN--------------ntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn---~DreS~~~Sr~aLe~ 179 (377)
T COG4782 117 TVLVFVHGFN--------------NTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYN---YDRESTNYSRPALER 179 (377)
T ss_pred eEEEEEcccC--------------CchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecc---cchhhhhhhHHHHHH
Confidence 5899999831 2333323455666666664 3344333222 1221 122333445677778
Q ss_pred HHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH----hC----CCceeEEEeccCCCC
Q 005240 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA----HA----PHLFCCGIARSGSYN 638 (706)
Q Consensus 589 ~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~----~~----p~~~~a~v~~~~~~d 638 (706)
++.+|.+...+ .+|-|++||||.+++...+- +. +..|+=+|..+|-.|
T Consensus 180 ~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 180 LLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred HHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 88999887543 68999999999999876652 22 235777888887654
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.97 E-value=4 Score=40.01 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=65.0
Q ss_pred eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcce
Q 005240 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
+.|..- ..+++++|.||.+.|+.+.+.. ..|+.++.+|+.++++.-....+ ...+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~~G~vlr~i~l~g~~D------------~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEP------------GEIYELSLDGKVLRRIPLDGFGD------------YEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTT------------TEEEEEETT--EEEEEE-SS-SS------------EEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCC------------CEEEEEcCCCCEEEEEeCCCCCC------------ceeE
Confidence 334433 4688999999999998777663 47888998887777654332111 2256
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEe-----ecccccccceecCCCceEEEEe
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILH-----KLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~-----~~~~~~~~~~wspDg~~l~~~~ 317 (706)
.+.-++. ++ +.... +..|+.++++. .+... +.+. .....+..++|.+.+..|+...
T Consensus 71 ~y~g~~~--~v-l~~Er----------~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGR--YV-LSEER----------DQRLYIFTIDD-DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTE--EE-EEETT----------TTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCE--EE-EEEcC----------CCcEEEEEEec-cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 6765553 22 32111 12355555521 22221 1121 1234467899999988888764
Q ss_pred eccccceEEEEEcC
Q 005240 318 WYKTSQTRTWLVCP 331 (706)
Q Consensus 318 ~~~~~~~~l~~~d~ 331 (706)
++ ....||.++.
T Consensus 137 -E~-~P~~l~~~~~ 148 (248)
T PF06977_consen 137 -ER-KPKRLYEVNG 148 (248)
T ss_dssp -ES-SSEEEEEEES
T ss_pred -CC-CChhhEEEcc
Confidence 33 4567898886
No 403
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=94.82 E-value=1.8 Score=42.92 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=34.2
Q ss_pred eEEEEcc-CCCceecCCC-----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee
Q 005240 158 QLVLGSL-DGTAKDFGTP-----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (706)
Q Consensus 158 ~l~~~~l-~g~~~~lt~~-----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (706)
.|-++++ +.....+..+ +.+.++.||+||.+|+-..++ -.|.+|+++.++.
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-------------hslk~W~l~~~~f 215 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-------------HSLKLWRLNVKEF 215 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc-------------ceEEEEecChhHH
Confidence 4555566 3355555443 577899999999998744433 3789999986543
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=7.4 Score=42.14 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=67.4
Q ss_pred eEEEEccCC--CceecCCC--ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCC
Q 005240 158 QLVLGSLDG--TAKDFGTP--AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAE 231 (706)
Q Consensus 158 ~l~~~~l~g--~~~~lt~~--~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~ 231 (706)
.|-+++-++ ...+..++ ..+..+++.| |-...+-.+-+ ..+-+|.+.... ..+|..+.
T Consensus 120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD-------------rTVKVWslgs~~~nfTl~gHe--- 183 (794)
T KOG0276|consen 120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD-------------RTVKVWSLGSPHPNFTLEGHE--- 183 (794)
T ss_pred EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc-------------ccEEEEEcCCCCCceeeeccc---
Confidence 455555544 56666666 6889999999 44555443333 478899987543 23333221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CCceEEeecccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~wspDg 310 (706)
.|+..+.|-+-|.. =|.++ +++. ..+.+||- .+ ..++.|..+...++.+.|.|.=
T Consensus 184 ----------kGVN~Vdyy~~gdk-pylIs---gaDD-------~tiKvWDy---Qtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 184 ----------KGVNCVDYYTGGDK-PYLIS---GADD-------LTIKVWDY---QTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ----------cCcceEEeccCCCc-ceEEe---cCCC-------ceEEEeec---chHHHHHHhhcccccceEEEecCCC
Confidence 34445555555543 33332 2222 24778887 33 2455666666777777787765
Q ss_pred ceEEEE
Q 005240 311 LALVNE 316 (706)
Q Consensus 311 ~~l~~~ 316 (706)
..|+..
T Consensus 240 piiisg 245 (794)
T KOG0276|consen 240 PIIISG 245 (794)
T ss_pred cEEEEe
Confidence 544443
No 405
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=94.75 E-value=0.96 Score=44.70 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.9
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.|..+...++.|+--.|+.+.+ ....|.+++..+.....+..+-+ +-.+.+-++.||+||.+|+..
T Consensus 134 hG~sINeik~~p~~~qlvls~S---------kD~svRlwnI~~~~Cv~VfGG~e-gHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSAS---------KDHSVRLWNIQTDVCVAVFGGVE-GHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCccchhhhcCCCCCcEEEEec---------CCceEEEEeccCCeEEEEecccc-cccCcEEEEEEcCCCCeeecc
Confidence 4556888999999988877663 34677778888888777653221 223346789999999988754
No 406
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.71 E-value=3.3 Score=40.44 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=26.2
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
..+-.+.+||||+.|+.....+ .|.+|++.+=
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG-------------~lsLW~iPsL 261 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSG-------------SLSLWEIPSL 261 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCC-------------eEEEEecCcc
Confidence 5677899999999999888764 7899988753
No 407
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=94.56 E-value=3.2 Score=43.07 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc-CCCCCC---------CC-------
Q 005240 584 SSAEAAVEEVV----RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS-GSYNKT---------LT------- 642 (706)
Q Consensus 584 ~D~~~~~~~l~----~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~-~~~d~~---------~~------- 642 (706)
+-+..|++.+. +...++.++.+|.|.|==|..|..+++-+ .|++|.+.++ .+.|.. +.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 34444444333 33446778999999999999999999866 6888887655 222211 00
Q ss_pred -------------------------Cccch----------------------HHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 643 -------------------------PFGFQ----------------------AERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 643 -------------------------~~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
|..|. ..-+++.|.. +..+.++|+.+|...
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~ 305 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLI 305 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccc
Confidence 11110 0055555554 668999999999886
Q ss_pred CcccHHHHHHHHHHHHHHHhccCC
Q 005240 676 ARENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
. .+..+.+..|+.+.+...+
T Consensus 306 ~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 306 G----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred h----HHHHHHHHHHHHHHHcCCC
Confidence 5 6788899999999765544
No 408
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.53 E-value=1.4 Score=47.50 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=74.0
Q ss_pred ceEEEEcc--CC--CceecCCC-ceEeeeee-CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC
Q 005240 157 AQLVLGSL--DG--TAKDFGTP-AVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l--~g--~~~~lt~~-~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 230 (706)
..+.+++. ++ -...|.+. .++.++++ .++...+ .+..- ..+|++||++.+..+.+......
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lv-aSgGL------------D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELV-ASGGL------------DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeE-EecCC------------CccEEEEEccCcchhhhhhcccc
Confidence 44555555 32 23344444 67788887 5554433 33322 35899999996644333222111
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg 310 (706)
......+ +-..+++.++-.+.|. ++ + .++... .|.+||.. ...+.-.|-.+...+..+..++||
T Consensus 162 t~~sl~s-G~k~siYSLA~N~t~t--~i-v---sGgtek-------~lr~wDpr--t~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 162 TVNSLGS-GPKDSIYSLAMNQTGT--II-V---SGGTEK-------DLRLWDPR--TCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccccCCC-CCccceeeeecCCcce--EE-E---ecCccc-------ceEEeccc--cccceeeeeccccceEEEEEcCCC
Confidence 0000000 0012233444444442 22 2 222221 36777762 334455566777788888999999
Q ss_pred ceEEEEeeccccceEEEEEc
Q 005240 311 LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d 330 (706)
.+++.++++ +..+||-+.
T Consensus 226 t~~ls~sSD--gtIrlWdLg 243 (735)
T KOG0308|consen 226 TRLLSASSD--GTIRLWDLG 243 (735)
T ss_pred CeEeecCCC--ceEEeeecc
Confidence 999987633 445566553
No 409
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=94.34 E-value=4.1 Score=39.78 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=55.5
Q ss_pred ceEEEEcc-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
.++-+.|+ .|.. ..|... +.+..+.|||-..+|+++.... ..+.+||+. ++..+.|-.... .
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD------------g~irlWDiRrasgcf~~lD~hn~-k 234 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD------------GAIRLWDIRRASGCFRVLDQHNT-K 234 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCC------------ceEEEEEeecccceeEEeecccC-c
Confidence 57788898 6743 445444 7899999999999999887653 368888876 455555544332 1
Q ss_pred CCCcc-cCccCCC-CcceeeecCCCceEE
Q 005240 232 DIPVC-YNSVREG-MRSISWRADKPSTLY 258 (706)
Q Consensus 232 ~~p~~-~~~~~~g-~~~~~~spdg~~~l~ 258 (706)
..|.. .+....| +..++|+.||.+ |+
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd~~~-l~ 262 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSDARY-LA 262 (397)
T ss_pred cCccccccccccceeeeeeecccchh-hh
Confidence 11111 1111223 237899999987 54
No 410
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=94.29 E-value=0.2 Score=54.03 Aligned_cols=150 Identities=9% Similarity=0.000 Sum_probs=76.4
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCC--C--chHHHHHHHCCeEEEEc
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--T--PTSSLIFLARRFAVLAG 561 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~G~~v~~~ 561 (706)
.+....+..+..|++.-.+ ++.. .|+||++.|||=+++-.....-.||...... . ......|.+..-+++.
T Consensus 17 ~~~~~~~~~lfyw~~~s~~-~~~~---~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~i- 91 (415)
T PF00450_consen 17 PVNDNENAHLFYWFFESRN-DPED---DPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFI- 91 (415)
T ss_dssp EECTTTTEEEEEEEEE-SS-GGCS---S-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE-
T ss_pred ecCCCCCcEEEEEEEEeCC-CCCC---ccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEEE-
Confidence 3333356788888886655 4333 6999999999854422111111222222200 0 1112233443333332
Q ss_pred CCCCcCCCCCCCCchh---hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHH----HhC------CCce
Q 005240 562 PSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLL----AHA------PHLF 627 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~---~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~----~~~------p~~~ 627 (706)
+---..|+........ .-++..+|+..++....++ +.....++.|+|-||||..+..++ .+. +=.+
T Consensus 92 D~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inL 171 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINL 171 (415)
T ss_dssp --STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEE
T ss_pred eecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccc
Confidence 2112234433322222 2356677777777644443 445566999999999998765554 333 2248
Q ss_pred eEEEeccCCCCCC
Q 005240 628 CCGIARSGSYNKT 640 (706)
Q Consensus 628 ~a~v~~~~~~d~~ 640 (706)
++++...|..+..
T Consensus 172 kGi~IGng~~dp~ 184 (415)
T PF00450_consen 172 KGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEESE-SBHH
T ss_pred ccceecCcccccc
Confidence 8999999987743
No 411
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=94.28 E-value=0.56 Score=47.08 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=69.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecc-cCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+-...|||.-+-+.++++- ++ .|-++|...+. +-..+ .+.. .+.-+.|+.+-..|++..+
T Consensus 259 SVEDLqWSptE~~vfaScS~-------Dg--sIrIWDiRs~~~~~~~~~kAh~s-----DVNVISWnr~~~lLasG~D-- 322 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSC-------DG--SIRIWDIRSGPKKAAVSTKAHNS-----DVNVISWNRREPLLASGGD-- 322 (440)
T ss_pred chhhhccCCccCceEEeeec-------Cc--eEEEEEecCCCccceeEeeccCC-----ceeeEEccCCcceeeecCC--
Confidence 57889999999999887743 34 45555655552 22222 2222 2777889877776776532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC----CCcee-cCCC-ceEeeeee
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKD-FGTP-AVYTAVEP 182 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~----g~~~~-lt~~-~~~~~~~~ 182 (706)
.+.+-++||. |++.. +... ..++++.|
T Consensus 323 -----------------------------------------------dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 323 -----------------------------------------------DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred -----------------------------------------------CceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 1556666762 23332 2233 68899999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
+|....++..+... .+|.+||+.
T Consensus 356 ~p~e~s~iaasg~D------------~QitiWDls 378 (440)
T KOG0302|consen 356 HPHEDSVIAASGED------------NQITIWDLS 378 (440)
T ss_pred ccccCceEEeccCC------------CcEEEEEee
Confidence 99777665554432 489999986
No 412
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.22 E-value=1.1 Score=44.12 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=59.9
Q ss_pred ceeEEEEEcCCCce---eecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccccc
Q 005240 61 KLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (706)
Q Consensus 61 ~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (706)
..+|-++++...+. .-|-.+... +..++..-+|..||..+.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt------------------------------- 201 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST------------------------------- 201 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-------------------------------
Confidence 46777778765444 333333332 677888899998886532
Q ss_pred chhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEE
Q 005240 138 TDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (706)
Q Consensus 138 ~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~ 212 (706)
..+-|-++|. +| ....+-.+ ..+..++||||+++|+..++.+ .+.
T Consensus 202 -----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlH 251 (346)
T KOG2111|consen 202 -----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLH 251 (346)
T ss_pred -----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEE
Confidence 1133445566 66 34444433 6788999999999999988764 577
Q ss_pred EEecCC
Q 005240 213 VWTTDG 218 (706)
Q Consensus 213 ~~~~~~ 218 (706)
++.+..
T Consensus 252 iF~l~~ 257 (346)
T KOG2111|consen 252 IFSLRD 257 (346)
T ss_pred EEEeec
Confidence 776653
No 413
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.17 E-value=8.2 Score=40.13 Aligned_cols=172 Identities=10% Similarity=0.047 Sum_probs=83.5
Q ss_pred ceEEEEccCC-Ccee-cCC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCC
Q 005240 157 AQLVLGSLDG-TAKD-FGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~-lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~ 229 (706)
+.|-..|+.+ .... ++. . .....+.++.+...++|..+-+ ..-+||+. +++...+.-+.-
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhhhc
Confidence 4566667754 2222 221 1 3556777888888887776553 23344443 333222221110
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EE--eeccccccccee
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL--HKLDLRFRSVSW 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l--~~~~~~~~~~~w 306 (706)
-+..+++.|-..+.|+ . .+ .+....+||+.-+.+.. . .| ..+...+.+..|
T Consensus 324 -------------KI~sv~~NP~~p~~la-T---~s--------~D~T~kIWD~R~l~~K~-sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 324 -------------KITSVALNPVCPWFLA-T---AS--------LDQTAKIWDLRQLRGKA-SPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred -------------ccceeecCCCCchhee-e---cc--------cCcceeeeehhhhcCCC-CcceecccccceeeeeEE
Confidence 1335677777776233 2 11 12246677774333222 1 23 345678889999
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc-cccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
||+|-.|+.+. .+ ...+||-...=+..-++......+- ..... ..|.-.|.||-.+|+...
T Consensus 378 SPs~gtl~TT~-~D-~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl--T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 378 SPSGGTLLTTC-QD-NEIRVFDSSCISAKDEPLGTIPHNNRTGRWL--TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred cCCCCceEeec-cC-CceEEeecccccccCCccceeeccCcccccc--cchhheeCCCccEEEEec
Confidence 99987777653 32 3444554421111123333321110 00000 123345888877776653
No 414
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.11 E-value=0.84 Score=48.48 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee-EEEeccCCCCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSYNKT 640 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~-a~v~~~~~~d~~ 640 (706)
++.+.++.. |..|..++|-|.||.+++++++..|+.+. .+++.+|+.-|.
T Consensus 129 v~~V~~~hp-~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 129 VEEVAERHP-DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred HHHHHHhCC-CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 444444432 33499999999999999999999999987 555566665444
No 415
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=94.01 E-value=0.58 Score=50.85 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=70.0
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC-CCCcccCccCCCCcceeeecCCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
....++..|..++++..-.+ ..|.++++..++.+++..+...+ +.+. .+..-|.|
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD-------------rnirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSg- 653 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD-------------RNIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSG- 653 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc-------------cceEEEeccccceeeeecccccCCCceE----------EEEECCCc-
Confidence 44566677777777655433 47999999977777666654332 2222 23344444
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+|.+.... + ..|.++|.- .+..+-+.+.+...+..+.|++|=+.|+..+.+ +=.-+|.+..
T Consensus 654 --iY~atScs---------d-ktl~~~Df~--sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 --IYLATSCS---------D-KTLCFVDFV--SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--GCIFVWKLPL 714 (1080)
T ss_pred --cEEEEeec---------C-CceEEEEec--cchhhhhhcCcchheeeeeecccchhheeecCC--ceEEEEECch
Confidence 44332111 1 136666661 334456678889999999999999999877522 3334555554
No 416
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.98 E-value=1.1 Score=49.41 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=78.1
Q ss_pred ceEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
+.+-.+|+.. .-...+.. ..++.++|||--...+++..+. ..+.+||+- ..-.++++.+.+.
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds------------G~lqlWDlRqp~r~~~k~~AH~Gp- 222 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS------------GYLQLWDLRQPDRCEKKLTAHNGP- 222 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC------------ceEEEeeccCchhHHHHhhcccCc-
Confidence 5666777732 33333333 6788999999655554444332 368889986 2234455555432
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-e-ecccccccceecCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-H-KLDLRFRSVSWCDD 309 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~-~~~~~~~~~~wspD 309 (706)
+..+.|+|++.. |+ ..+.+. .+.+|+. .+.+...+ + .....+..+.|-|+
T Consensus 223 ------------V~c~nwhPnr~~-lA----TGGRDK--------~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 223 ------------VLCLNWHPNREW-LA----TGGRDK--------MVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ------------eEEEeecCCCce-ee----ecCCCc--------cEEEEec---cCCCccceeEEeecceeeeeeeccC
Confidence 346799997765 54 122122 4777877 44554443 2 45677888999999
Q ss_pred CceEEEEeeccccceEEEEEcCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+.+....- .....|+++|+.-
T Consensus 275 ~~~hLAtcsm-v~dtsV~VWDvrR 297 (839)
T KOG0269|consen 275 RSYHLATCSM-VVDTSVHVWDVRR 297 (839)
T ss_pred ccchhhhhhc-cccceEEEEeecc
Confidence 7654433211 1334466666543
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.98 E-value=2.5 Score=44.62 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=71.1
Q ss_pred ceEEEEcc---CCCc---eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE-ecCCC-----eeEE
Q 005240 157 AQLVLGSL---DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW-TTDGK-----LVRE 223 (706)
Q Consensus 157 ~~l~~~~l---~g~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-----~~~~ 223 (706)
.+|++++- +|.. +.+... .....+++.++| |+++.. .+|+.+ +.++. +.+.
T Consensus 47 ~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~ 110 (367)
T TIGR02604 47 DRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREV 110 (367)
T ss_pred CEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEE
Confidence 36776654 3432 333333 456788999998 555432 256655 44321 3333
Q ss_pred cccCCCCC-CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC--------CccccCccceeeeecCCCCCCCCceEE
Q 005240 224 LCDLPPAE-DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD--------ANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 224 l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
|...-... ..+ ......+.|.|||. ||+.....+.. ..........+++++. ++++.+.+
T Consensus 111 l~~~~~~~~~~~------~~~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~ 179 (367)
T TIGR02604 111 LLSGFGGQINNH------HHSLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVV 179 (367)
T ss_pred EEEccCCCCCcc------cccccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEE
Confidence 43321111 001 12244789999996 77654321110 0011123457899888 67777666
Q ss_pred eecccccccceecCCCceEE
Q 005240 295 HKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 295 ~~~~~~~~~~~wspDg~~l~ 314 (706)
...-.....++|+|+|..++
T Consensus 180 a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 180 AHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ecCcCCCccceECCCCCEEE
Confidence 55555567889999987544
No 418
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.93 E-value=0.86 Score=46.49 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
+.-..++...|..|+.+ +..-.||.++.+++.++.++......--....++..+++|. |||+....+-+
T Consensus 116 RPLGl~f~~~ggdL~Va----------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~ 184 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA----------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYD 184 (376)
T ss_pred CcceEEeccCCCeEEEE----------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccc
Confidence 55667888888766443 55578999999999988887543321111123667778554 67763211110
Q ss_pred CCCCCCCCCCCceeecCCCcccccccch-hccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTD-NLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
.+.+- ..+ .....++|+.+|... ..+.|.++ .....++.|||+..
T Consensus 185 -----------------------~rd~~~a~l---------~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 185 -----------------------RRDFVFAAL---------EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred -----------------------hhheEEeee---------cCCCccceEEecCcccchhhhhhcccccccccCCCCCCE
Confidence 00000 000 011347899999854 56666665 56678999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCee---EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
++|..+.. .+|..|=+.+.+. ..+.. +.| ..+.+|..+++|..+++
T Consensus 233 vl~~Et~~------------~ri~rywi~g~k~gt~EvFa~-----~LP-------G~PDNIR~~~~G~fWVa 281 (376)
T KOG1520|consen 233 VLVAETTT------------ARIKRYWIKGPKAGTSEVFAE-----GLP-------GYPDNIRRDSTGHFWVA 281 (376)
T ss_pred EEEEeecc------------ceeeeeEecCCccCchhhHhh-----cCC-------CCCcceeECCCCCEEEE
Confidence 99987763 4666666665543 22222 111 22446777888875333
No 419
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=93.89 E-value=0.097 Score=50.49 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC----CceeEEEeccC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSG 635 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p----~~~~a~v~~~~ 635 (706)
..|++|+.+.-.-.+.+|.+.|||.||.+|.++++..+ +++..+.++.|
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 35667776542222456999999999999999998842 46777776664
No 420
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=93.87 E-value=3 Score=42.20 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--e-eE-EcccCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VR-ELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~-~l~~~~~~ 230 (706)
..|.++|+ .| ....++.+.....+..+|..+.|+-.+.. ..|.+||...+ . ++ ++..+.
T Consensus 281 HTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd-------------r~irl~DPR~~~gs~v~~s~~gH~-- 345 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD-------------RHIRLWDPRTGDGSVVSQSLIGHK-- 345 (423)
T ss_pred ceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC-------------CceeecCCCCCCCceeEEeeecch--
Confidence 57888898 55 55566666677789999998888765544 37899998732 2 22 222221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC-CceEEeecccccccceecCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDD 309 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~wspD 309 (706)
+.+..+.|+|....+++ -...+ +.+.+||+. ... .+-.|..+...+..+.|..
T Consensus 346 -----------nwVssvkwsp~~~~~~~-S~S~D-----------~t~klWDvR--S~k~plydI~~h~DKvl~vdW~~- 399 (423)
T KOG0313|consen 346 -----------NWVSSVKWSPTNEFQLV-SGSYD-----------NTVKLWDVR--STKAPLYDIAGHNDKVLSVDWNE- 399 (423)
T ss_pred -----------hhhhheecCCCCceEEE-EEecC-----------CeEEEEEec--cCCCcceeeccCCceEEEEeccC-
Confidence 12447789998876232 21111 246677773 222 2344555666777777754
Q ss_pred CceEEE
Q 005240 310 SLALVN 315 (706)
Q Consensus 310 g~~l~~ 315 (706)
+..|+.
T Consensus 400 ~~~IvS 405 (423)
T KOG0313|consen 400 GGLIVS 405 (423)
T ss_pred CceEEe
Confidence 334443
No 421
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=93.76 E-value=4.9 Score=44.88 Aligned_cols=137 Identities=19% Similarity=0.168 Sum_probs=79.9
Q ss_pred eEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 158 QLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 158 ~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
.|-+..|.| +++.+... .....+++.--++-++++... -.+|.+..++|+..+.|.....
T Consensus 1048 SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~------------lD~IevA~LdG~~rkvLf~tdL----- 1110 (1289)
T KOG1214|consen 1048 SISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSV------------LDKIEVALLDGSERKVLFYTDL----- 1110 (1289)
T ss_pred ccccccccCCCCceeecccCCCccceeeeeccceeeeeccc------------cchhheeecCCceeeEEEeecc-----
Confidence 344445555 55555433 233344444445556655433 2478888999998887765543
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-cccccceecCCCceE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLAL 313 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~wspDg~~l 313 (706)
..++.+...+-+.. |||.. ..... ..|-..+. +|...+.|...+ +....+.|.|..+.|
T Consensus 1111 -------VNPR~iv~D~~rgn-LYwtD-WnRen--------PkIets~m---DG~NrRilin~DigLPNGLtfdpfs~~L 1170 (1289)
T KOG1214|consen 1111 -------VNPRAIVVDPIRGN-LYWTD-WNREN--------PKIETSSM---DGENRRILINTDIGLPNGLTFDPFSKLL 1170 (1289)
T ss_pred -------cCcceEEeecccCc-eeecc-ccccC--------Ccceeecc---CCccceEEeecccCCCCCceeCccccee
Confidence 12556677776666 88762 11111 12444454 666666665543 455678888888888
Q ss_pred EEEeeccccceEEEEEcCCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~ 334 (706)
-|.. .+..+|--+..++.
T Consensus 1171 CWvD---AGt~rleC~~p~g~ 1188 (1289)
T KOG1214|consen 1171 CWVD---AGTKRLECTLPDGT 1188 (1289)
T ss_pred eEEe---cCCcceeEecCCCC
Confidence 7753 35666776766664
No 422
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.59 E-value=0.28 Score=49.42 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC---C------eEEEEc
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---R------FAVLAG 561 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---G------~~v~~~ 561 (706)
.|..|+-.-..|+.-+ .++..+|+++ +||=| +.-..++.+.-+|..- | |-|++|
T Consensus 132 eGL~iHFlhvk~p~~k-~~k~v~PlLl-~HGwP---------------Gsv~EFykfIPlLT~p~~hg~~~d~~FEVI~P 194 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKK-KKKKVKPLLL-LHGWP---------------GSVREFYKFIPLLTDPKRHGNESDYAFEVIAP 194 (469)
T ss_pred cceeEEEEEecCCccc-cCCcccceEE-ecCCC---------------chHHHHHhhhhhhcCccccCCccceeEEEecc
Confidence 5889999888888743 3345678655 78743 1111233444555543 4 566764
Q ss_pred CCCCcCCCCCCCCc--hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 562 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 562 ~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~-~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
.- .|||.+... ..+...... .++ +-+...++ ++-.|-|+-+|..++..++..+|+.+.+.
T Consensus 195 Sl---PGygwSd~~sk~GFn~~a~A---rvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 195 SL---PGYGWSDAPSKTGFNAAATA---RVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred CC---CCcccCcCCccCCccHHHHH---HHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 33 256655443 223222222 222 23344455 78999999999999999999999977654
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=7.3 Score=38.43 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=86.7
Q ss_pred cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCC
Q 005240 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT 167 (706)
Q Consensus 88 ~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~ 167 (706)
.++++.|+||.+.|+.+.+. ..+|..++.+|+
T Consensus 87 nvS~LTynp~~rtLFav~n~------------------------------------------------p~~iVElt~~Gd 118 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK------------------------------------------------PAAIVELTKEGD 118 (316)
T ss_pred cccceeeCCCcceEEEecCC------------------------------------------------CceEEEEecCCc
Confidence 38899999999998877431 156777788883
Q ss_pred -ceec--CCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEccc--CCCCCCCCcccCccC
Q 005240 168 -AKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCD--LPPAEDIPVCYNSVR 241 (706)
Q Consensus 168 -~~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~--~~~~~~~p~~~~~~~ 241 (706)
.+.+ +...+...++|.-+|++++.-... ..++++.++.. .+..+.. .+... .+...
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER~-------------~~l~~~~vd~~t~~~~~~~~~i~L~~-----~~k~N 180 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDERD-------------RALYLFTVDADTTVISAKVQKIPLGT-----TNKKN 180 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehhc-------------ceEEEEEEcCCccEEeccceEEeccc-----cCCCC
Confidence 3333 333667788898888776533222 35666655522 1111111 01000 00111
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC--CC---CCCceEEee-cccccccceecCCCceEEE
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP--AE---GEKPEILHK-LDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~---~~~~~~l~~-~~~~~~~~~wspDg~~l~~ 315 (706)
.|-..++|.|.... |++....+. -.||.++..+ +. ...++.... .-..++.+.+.+....|++
T Consensus 181 ~GfEGlA~d~~~~~-l~~aKEr~P----------~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 181 KGFEGLAWDPVDHR-LFVAKERNP----------IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred cCceeeecCCCCce-EEEEEccCC----------cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 34447899999987 766643221 1355554311 00 000110000 0123556667666545555
Q ss_pred EeeccccceEEEEEcCCCC
Q 005240 316 ETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~ 334 (706)
.+.+ ...|..+|.++.
T Consensus 250 LS~E---Sr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDE---SRRLLEVDLSGE 265 (316)
T ss_pred EecC---CceEEEEecCCC
Confidence 4422 345777887763
No 424
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.48 E-value=4.4 Score=44.85 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred ceEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCc
Q 005240 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPV 235 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~ 235 (706)
..|+.....+..+.+..+.....++|+++| +|+...... ...+.++.-++. ........ ..
T Consensus 365 ~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~------~v 426 (573)
T PRK13614 365 TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTV------TL 426 (573)
T ss_pred cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccce------ee
Confidence 367766664555555555567789999998 776444322 124555443322 11000000 00
Q ss_pred ccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeee--ecCCCCCCCCceEEeec-----ccccccceec
Q 005240 236 CYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT--QPAEPAEGEKPEILHKL-----DLRFRSVSWC 307 (706)
Q Consensus 236 ~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~l~~~-----~~~~~~~~ws 307 (706)
...+.... +..+..|+||-+ ++++...++... |++ +-.+ ..|.++.|+.. .....++.|.
T Consensus 427 ~~~~l~g~~I~~lrvSrDG~R-~Avi~~~~g~~~---------V~va~V~R~--~~G~P~~L~~~~~~~~~~~~~sl~W~ 494 (573)
T PRK13614 427 TADWLAGRTVKELRVSREGVR-ALVISEQNGKSR---------VQVAGIVRN--EDGTPRELTAPITLAADSDADTGAWV 494 (573)
T ss_pred cccccCCCeeEEEEECCCccE-EEEEEEeCCccE---------EEEEEEEeC--CCCCeEEccCceecccCCCcceeEEc
Confidence 00011111 447899999998 666653333221 333 2221 34566666532 2466788999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.++..++... ..+....++++.+++
T Consensus 495 ~~~sl~V~~~-~~~~~~~~~~v~v~~ 519 (573)
T PRK13614 495 GDSTVVVTKA-SATSNVVPELLSVDA 519 (573)
T ss_pred CCCEEEEEec-cCCCcceEEEEEeCC
Confidence 9988666553 233455677777755
No 425
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.45 E-value=5.3 Score=42.71 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=43.2
Q ss_pred eeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC--
Q 005240 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG-- 354 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~-- 354 (706)
.||+++++ .|.=++.+....+.+..+...+-...|++.. ..+.+-.+|...... ...| +.. ..+.+.|+
T Consensus 156 evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt----~~g~VEfwDpR~ksr-v~~l-~~~-~~v~s~pg~~ 226 (703)
T KOG2321|consen 156 EVYRLNLE--QGRFLNPFETDSGELNVVSINEEHGLLACGT----EDGVVEFWDPRDKSR-VGTL-DAA-SSVNSHPGGD 226 (703)
T ss_pred ceEEEEcc--ccccccccccccccceeeeecCccceEEecc----cCceEEEecchhhhh-heee-ecc-cccCCCcccc
Confidence 48888883 3333344444456666667777666666543 223455566655321 1111 111 11222332
Q ss_pred ----CCceEeccCCCEEEEee
Q 005240 355 ----SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 355 ----~~~~~~s~dg~~l~~~~ 371 (706)
...+.|+.||-.+++..
T Consensus 227 ~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred ccCcceEEEecCCceeEEeec
Confidence 33566777887776654
No 426
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.39 E-value=1.4 Score=47.34 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHc--CCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCCC--------------Ccc
Q 005240 583 VSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLT--------------PFG 645 (706)
Q Consensus 583 ~~D~~~~~~~l~~~--~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~~--------------~~~ 645 (706)
.+-.+.+.++...+ +..--..|.++|+|||..++.++...+.| .+.|+|++.=.++...- |..
T Consensus 229 ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgirDE~Lldmk~PVL 308 (784)
T KOG3253|consen 229 AEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIRDEALLDMKQPVL 308 (784)
T ss_pred HHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCcchhhHhcCCceE
Confidence 34444444443322 22223589999999998888887766644 36777776543332221 211
Q ss_pred c------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 005240 646 F------------QAERFFDALKGHGALSRLVLLPFEHHVYAA 676 (706)
Q Consensus 646 ~------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 676 (706)
| ..|++.+++++ ++++++..+++|.+.-
T Consensus 309 FV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 309 FVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred EEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 1 11255555544 6789999999999864
No 427
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.35 E-value=12 Score=41.33 Aligned_cols=62 Identities=16% Similarity=0.354 Sum_probs=33.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..++|...-++|..+.+ +|--=+|.+= ++.=....++.-. ...+.+..|..||.+|...-
T Consensus 73 sV~vvTWNe~~QKLTtSDt--------~GlIiVWmly-kgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIvY 134 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDT--------SGLIIVWMLY-KGSWCEEMINNRN---KSVVVSMSWNLDGTKICIVY 134 (1189)
T ss_pred eEEEEEeccccccccccCC--------CceEEEEeee-cccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEEE
Confidence 5667788887777744311 3434444442 2221222221111 12367899999999877653
No 428
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=93.17 E-value=0.4 Score=46.80 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh----CC-----CceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----AP-----HLFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~----~p-----~~~~a~v~~~~~~d 638 (706)
..++...++.|.+. ....+|-|++||||+.+.+.++.. .+ .+|.-++..+|-++
T Consensus 76 ~~~l~~~L~~L~~~--~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 76 GPALARFLRDLARA--PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred HHHHHHHHHHHHhc--cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 44455555555554 235799999999999998877633 21 26778888888665
No 429
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=93.15 E-value=0.34 Score=49.98 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=59.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+...++++|..|+..+-+ +..++.. ...+-+-+.+++..+++.+.+.-. .++|-+.|+|.||.++..+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw~-nPd~~~~--~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWR-NPDASLA--AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEecc-CchHhhh--hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 4567788999999873332 1112111 222222233777788888877632 3689999999999999999988877
Q ss_pred c-eeEEEeccCCCC
Q 005240 626 L-FCCGIARSGSYN 638 (706)
Q Consensus 626 ~-~~a~v~~~~~~d 638 (706)
+ ++.+..+....|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 7 777777766555
No 430
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=93.12 E-value=0.58 Score=43.93 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC--C----C--ceeEEEeccCCCCCC--C----------CCcc
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--P----H--LFCCGIARSGSYNKT--L----------TPFG 645 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~--p----~--~~~a~v~~~~~~d~~--~----------~~~~ 645 (706)
+....+|+.+++.-| ||.|+|.|+.|+.++++.. + . .|+-+|..+|..-+. + +|..
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~~~~~~~~~i~~PSL 167 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKLDESAYKRPLSTPSL 167 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchhhhhhhccCCCCCee
Confidence 556677888887777 8999999999999998722 1 1 478888888865431 0 1211
Q ss_pred -c-----------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 -F-----------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 -~-----------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
. .++.|++.+... ..+.-|| +|.+-+. ....+.+.+||+..+..
T Consensus 168 Hi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~~---~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 168 HIFGETDTIVPSERSEQLAESFKDA----TVLEHPG-GHIVPNK---AKYKEKIADFIQSFLQE 223 (230)
T ss_pred EEecccceeecchHHHHHHHhcCCC----eEEecCC-CccCCCc---hHHHHHHHHHHHHHHHh
Confidence 0 123555555443 5566665 8988643 25677888888886653
No 431
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.08 E-value=3.4 Score=42.89 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=38.1
Q ss_pred CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 174 ~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
++.+.+++-+|+|.+|+..... .+||+|.+.++..-.+...... .+.-+.||-||
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~-------------g~lYlWelssG~LL~v~~aHYQ------------~ITcL~fs~dg 135 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTIS-------------GNLYLWELSSGILLNVLSAHYQ------------SITCLKFSDDG 135 (476)
T ss_pred ccceeeeecCCCceEEEeeccc-------------CcEEEEEeccccHHHHHHhhcc------------ceeEEEEeCCC
Confidence 3678899999999988754333 4899999998865433322211 12356788888
Q ss_pred Cc
Q 005240 254 PS 255 (706)
Q Consensus 254 ~~ 255 (706)
..
T Consensus 136 s~ 137 (476)
T KOG0646|consen 136 SH 137 (476)
T ss_pred cE
Confidence 74
No 432
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=92.92 E-value=0.25 Score=43.77 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-------CCceeEEEeccC
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-------PHLFCCGIARSG 635 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-------p~~~~a~v~~~~ 635 (706)
.....+...++.+.++.. +.+|.+.|||+||.+|..++... +..+++..-.+|
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P 104 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAP 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCc
Confidence 344555666666655543 47999999999999998888652 134555555444
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.80 E-value=5.3 Score=41.38 Aligned_cols=82 Identities=15% Similarity=0.016 Sum_probs=39.7
Q ss_pred CcceeeecCCCceEEEEEeccCCC--CccccCccceeeeecCCCCCCC-------------CceEEeecccccccceecC
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGD--ANVEVSPRDIIYTQPAEPAEGE-------------KPEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~--~~~~~~~~~~l~~~d~~~~~~~-------------~~~~l~~~~~~~~~~~wsp 308 (706)
...+.|.|||. ||+..-..... .......++.|.+++. ++. ..+.....-.....++|.|
T Consensus 116 g~~l~fgpDG~--LYvs~G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 116 GGGLAFGPDGK--LYVSVGDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp EEEEEE-TTSE--EEEEEB-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CccccCCCCCc--EEEEeCCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34789999993 77654322221 1112234567888887 332 2223333445556778888
Q ss_pred CCceEEEEeeccccceEEEEEc
Q 005240 309 DSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d 330 (706)
....|+...........|.++.
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCcEEEEccCCCCCcEEEEec
Confidence 8333443333333344555554
No 434
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.70 E-value=6.5 Score=40.92 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=42.6
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+...+-+|+|.+|+-. .-..+||++.+.+|+...+..... ..+..+.+|.||+.|+..+
T Consensus 84 v~al~s~n~G~~l~ag----------~i~g~lYlWelssG~LL~v~~aHY----Q~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG----------TISGNLYLWELSSGILLNVLSAHY----QSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeeecCCCceEEEee----------cccCcEEEEEeccccHHHHHHhhc----cceeEEEEeCCCcEEEecC
Confidence 6778889999988653 245789999999998665542211 1266789999999877654
No 435
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.69 E-value=0.39 Score=43.45 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSG 635 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~ 635 (706)
....+...++...++ -...+|.++|||+||.+|..++.+... ....++++++
T Consensus 10 ~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 10 LANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 344444555444433 134799999999999999998877643 3344455544
No 436
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=92.61 E-value=0.36 Score=47.53 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKT 640 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d~~ 640 (706)
......=+..++.+|.++.-+ +++-+.||||||..+...+..+.. .+.-.|+.++.++..
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 344455677888999888655 689999999999999999988632 478888888877643
No 437
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=92.46 E-value=0.85 Score=50.81 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
....++||.+++++.....+ +|.+|.--+..-. ......++|..+.+..++||+||..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-------------rI~vw~d~~~~~~--------~~t~t~lHWH~~~V~~L~fS~~G~~- 265 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-------------RILVWRDFGSSDD--------SETCTLLHWHHDEVNSLSFSSDGAY- 265 (792)
T ss_pred ceeEEeccccceEEEeccCC-------------cEEEEeccccccc--------cccceEEEecccccceeEEecCCce-
Confidence 46788999999998655442 5777765442100 0111222232233557899999987
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEE
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (706)
|+ .+|.+. .+.+|.+ ++++.+-|+.....+..+.||||+......
T Consensus 266 Ll-----SGG~E~-------VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 266 LL-----SGGREG-------VLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred Ee-----ecccce-------EEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEE
Confidence 54 344443 3667777 777877788888999999999999866554
No 438
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.41 E-value=15 Score=38.16 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=39.6
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCccccccccceEEecCCc-EEEEE
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNST-LLIFT 104 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~~~~wSpDg~-~l~~~ 104 (706)
-...|.-.-+.|.++. .....|-++|+++|++.+... ... .+..+.|.|.-- .|+..
T Consensus 247 l~Ls~n~~~~nVLaSg---------saD~TV~lWD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASG---------SADKTVKLWDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSG 305 (463)
T ss_pred HHHHhccccceeEEec---------CCCceEEEEEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEec
Confidence 3567887888887765 334678888999999887654 333 288999998654 44433
No 439
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.11 E-value=1.5 Score=35.13 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=38.2
Q ss_pred ccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 155 TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 155 ~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..++|+.+|. +++.+.|..+ .....+++|||++.|++..... .+|..+-+.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~------------~Ri~rywl~G 88 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR------------YRILRYWLKG 88 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG------------TEEEEEESSS
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC------------ceEEEEEEeC
Confidence 5589999999 5577777766 6778999999999999887653 4666665543
No 440
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=92.10 E-value=0.71 Score=46.69 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHh
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYC 695 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f~~~~l 695 (706)
+++.+.... +.+.+++++..|........ .+.+..+.+||.+++
T Consensus 253 ~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 253 DLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred HHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 555555544 67889999999998753333 489999999999976
No 441
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.04 E-value=12 Score=40.54 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=80.1
Q ss_pred ceEEEEccCC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..|.++..+| +...|..- .+.-.+.||-...+.+++-...-.. .....-+-.+|++..++++++.-....-.
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~----~g~~~~d~ciYE~~r~klqrvsvtsipL~ 259 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV----KGEPSADSCIYECSRNKLQRVSVTSIPLP 259 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC----CCCceeEEEEEEeecCceeEEEEEEEecC
Confidence 5777778766 66655432 3556777887444444443332100 01113456677777666665533221111
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
..+...+++|+... |+.-. .| +.|.++|. ....+.++...-....++|+|||..
T Consensus 260 ---------s~v~~ca~sp~E~k-LvlGC-~D-----------gSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 260 ---------SQVICCARSPSEDK-LVLGC-ED-----------GSIILYDT----TRGVTLLAKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred ---------CcceEEecCcccce-EEEEe-cC-----------CeEEEEEc----CCCeeeeeeecccceEEEEcCCCcE
Confidence 22446789999987 54332 11 23666765 2334445555666778899999998
Q ss_pred EEEEeeccccceEEEEEcCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+++.+ ..+.|..+|.+-
T Consensus 314 ~~V~s----~qGelQ~FD~AL 330 (545)
T PF11768_consen 314 FVVGS----EQGELQCFDMAL 330 (545)
T ss_pred EEEEc----CCceEEEEEeec
Confidence 88765 233466666543
No 442
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.59 E-value=6.6 Score=42.67 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.3
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..|-++|. ++ +..+|... ..+..+..++||++++-.+.+ ..|.+|++.-
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD-------------gtIrlWdLgq 244 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD-------------GTIRLWDLGQ 244 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC-------------ceEEeeeccc
Confidence 46677787 55 66677655 788999999999999866554 3799999973
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.59 E-value=2.6 Score=44.40 Aligned_cols=36 Identities=8% Similarity=-0.095 Sum_probs=26.3
Q ss_pred ceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEe
Q 005240 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~ 193 (706)
+.+++++.+| +.+.+..+ .....++|+|+|+.+ ++.
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~-~td 201 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVF-FCD 201 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEE-EEc
Confidence 6899999976 66666655 455689999998663 443
No 444
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=91.54 E-value=2.8 Score=40.84 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=50.1
Q ss_pred ceEEEEccCC---CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..+.++|+.- ...+|... +.+.+++|.|-.+.-+.+..+ ..++.+||++......+.+...+-
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------------D~qaliWDl~q~~~~~~~dPilay- 332 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------------DCQALIWDLQQMPRENGEDPILAY- 332 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------------cceEEEEecccccccCCCCchhhh-
Confidence 5677778732 34455555 788999999988877666654 258899999854321221111100
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEE
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
.....+..++|++.....|+.+
T Consensus 333 ------~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 333 ------TAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ------hccceeeeeeecccCCCEEEEE
Confidence 0011244789997665545543
No 445
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.51 E-value=14 Score=35.79 Aligned_cols=57 Identities=25% Similarity=0.191 Sum_probs=32.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCccccee--eCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~--~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 78 (706)
.|...|+.. |+..--..+... ...+. ..+++++|+.. .....|+.+|+++|+...-.
T Consensus 4 ~l~~~d~~t----G~~~W~~~~~~~--~~~~~~~~~~~~~~v~~~----------~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 4 TLSALDPRT----GKELWSYDLGPG--IGGPVATAVPDGGRVYVA----------SGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp EEEEEETTT----TEEEEEEECSSS--CSSEEETEEEETTEEEEE----------ETTSEEEEEETTTSEEEEEE
T ss_pred EEEEEECCC----CCEEEEEECCCC--CCCccceEEEeCCEEEEE----------cCCCEEEEEECCCCCEEEEe
Confidence 455666644 544433333222 33334 45577777554 34579999999888765443
No 446
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=91.44 E-value=0.24 Score=52.60 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-+|+.+|||++ |..+-.++- ...+.|+ ++|+-|+..+|.- ..+.-.....+.+.-|..|
T Consensus 397 sli~HcHGGGf--------VAqsSkSHE----~YLr~Wa~aL~cPiiSVdYSL--------APEaPFPRaleEv~fAYcW 456 (880)
T KOG4388|consen 397 SLIVHCHGGGF--------VAQSSKSHE----PYLRSWAQALGCPIISVDYSL--------APEAPFPRALEEVFFAYCW 456 (880)
T ss_pred eEEEEecCCce--------eeecccccc----HHHHHHHHHhCCCeEEeeecc--------CCCCCCCcHHHHHHHHHHH
Confidence 58999999965 443323332 2345565 4899998866631 1111122335556677888
Q ss_pred HHHcCC---CCCCcEEEEEechHHHHHHHHHHh
Q 005240 593 VVRRGV---ADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 593 l~~~~~---id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
++.... .-..||.+.|.|.||.+...++.+
T Consensus 457 ~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 457 AINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 887522 234799999999999986555543
No 447
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.41 E-value=0.49 Score=46.50 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC---CCceeEEEeccC
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSG 635 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~---p~~~~a~v~~~~ 635 (706)
..+++++...++|..++-. ..+.+.|+|+||.+|.-++.+- ...+..++....
T Consensus 46 ~l~~~a~~yv~~Ir~~QP~-----GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~ 101 (257)
T COG3319 46 SLDDMAAAYVAAIRRVQPE-----GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDA 101 (257)
T ss_pred CHHHHHHHHHHHHHHhCCC-----CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3444444444444433222 4799999999999998887542 234555544443
No 448
>PLN02209 serine carboxypeptidase
Probab=91.39 E-value=1.3 Score=47.62 Aligned_cols=153 Identities=9% Similarity=0.004 Sum_probs=74.1
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCC--------CchHHHHHHHC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--------TPTSSLIFLAR 554 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 554 (706)
-.+.+....+..+..|++.... ++.. .|+|+++-|||=++.-.....-.+|...... -......|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~~---~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQE---DPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCCC---CCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3444544345667777776543 3332 6999999999854422111111222221110 00011123333
Q ss_pred CeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHh----C----
Q 005240 555 RFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAH----A---- 623 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~----~---- 623 (706)
--.++. +---+.|+..... ....-+..++|+..++....+ -+.--...+.|+|.||||..+-.++.+ .
T Consensus 118 anllfi-DqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 ANIIFL-DQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred CcEEEe-cCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 323332 2112223322111 111112334666666653333 333345689999999999866555422 2
Q ss_pred -C-CceeEEEeccCCCCCC
Q 005240 624 -P-HLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 -p-~~~~a~v~~~~~~d~~ 640 (706)
+ =-+++++...|..|..
T Consensus 197 ~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 197 NPPINLQGYVLGNPITHIE 215 (437)
T ss_pred CCceeeeeEEecCcccChh
Confidence 1 1477888888877743
No 449
>PRK13615 lipoprotein LpqB; Provisional
Probab=91.18 E-value=13 Score=41.09 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred eEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
.|++....+..+.+........++|+++| +|+...... ...+.....+| ....+ ..+....
T Consensus 356 ~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-----------~~~l~~~~~~G-~~~~v-~v~~~~~----- 416 (557)
T PRK13615 356 VWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-----------PRGLVAWGPDG-VGHPV-AVSWTAT----- 416 (557)
T ss_pred eEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-----------ceEEEEecCCC-ceEEe-eccccCC-----
Confidence 45555555555555555567899999998 776443322 11233332222 22222 1121111
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-ee------cccccccceecCCC
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK------LDLRFRSVSWCDDS 310 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~------~~~~~~~~~wspDg 310 (706)
..+..+..|+||-+ ++++...+++.. |++.-+.- +++.++.| +. ......++.|..++
T Consensus 417 ----~~I~~lrvSrDG~R-~Avi~~~~g~~~---------V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 417 ----GRVVSLEVARDGAR-VLVQLETGAGPQ---------LLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred ----CeeEEEEeCCCccE-EEEEEecCCCCE---------EEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 11447899999998 776654333222 33322210 34445555 32 23366788899998
Q ss_pred ceEEEEeeccccceEEEEEcCCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...+... ..+....++++.+.+.
T Consensus 482 ~laVl~~-~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTL-APDGERQVELHQVGGP 504 (557)
T ss_pred EEEEEec-cCCCCceEEEEECCCc
Confidence 8555542 2234456888888874
No 450
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=91.11 E-value=0.53 Score=49.94 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=55.4
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.+.+.|.+.||..-. +-+ ..+| .|+... .....+..+...|+.+.+.. .++|.|+||||||.++...+...+
T Consensus 69 ~li~~L~~~GY~~~~-~l~-~~pY--DWR~~~~~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~~~~ 141 (389)
T PF02450_consen 69 KLIENLEKLGYDRGK-DLF-AAPY--DWRLSPAERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQWMP 141 (389)
T ss_pred HHHHHHHhcCcccCC-EEE-EEee--chhhchhhHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHHhcc
Confidence 456778888986511 000 0012 223211 23345666667777666543 579999999999999999887764
Q ss_pred C------ceeEEEeccCCCC
Q 005240 625 H------LFCCGIARSGSYN 638 (706)
Q Consensus 625 ~------~~~a~v~~~~~~d 638 (706)
. .++..|++++.+.
T Consensus 142 ~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 142 QEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred chhhHHhhhhEEEEeCCCCC
Confidence 3 4888898887664
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.07 E-value=19 Score=36.39 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=40.6
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCC-----CcccceeeCCC----CCeEEEEeeccccccccCCceeEEEEEcCCCce
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDG-----AKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~ 74 (706)
...|.+.||.+ ++..+.-.+|.. .....+++-.. ++..||..+ .+...|.++|+.+++.
T Consensus 33 ~pKLv~~Dl~t----~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD--------~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 33 PPKLVAFDLKT----NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD--------SGGPGLIVYDLATGKS 100 (287)
T ss_dssp --EEEEEETTT----TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE--------TTTCEEEEEETTTTEE
T ss_pred CcEEEEEECCC----CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC--------CCcCcEEEEEccCCcE
Confidence 45788889977 554433334532 23445555552 237889875 4556999999999999
Q ss_pred eecccC
Q 005240 75 KPLFES 80 (706)
Q Consensus 75 ~~lt~~ 80 (706)
+++.+.
T Consensus 101 ~Rv~~~ 106 (287)
T PF03022_consen 101 WRVLHN 106 (287)
T ss_dssp EEEETC
T ss_pred EEEecC
Confidence 998654
No 452
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=90.89 E-value=24 Score=37.27 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=28.7
Q ss_pred ceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.|+.+|.++|+ .+|....- ......+....+..++....+ ..++.+|..+|+...
T Consensus 290 ~l~~~d~~tG~--~~W~~~~~----------~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGS--ELWKNDEL----------KYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCc--EEEccccc----------cCCccccCEEECCEEEEEeCC----CEEEEEECCCCCEEE
Confidence 47788988885 35543210 000001111234555543322 469999988887654
No 453
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=90.31 E-value=0.33 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred CCcEEEEEechHHHHHHHHHH
Q 005240 601 PSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~ 621 (706)
..+|.++|||+||.++-+++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 468999999999999877775
No 454
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.30 E-value=13 Score=36.94 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=55.5
Q ss_pred ceEEEEccCC-C---ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCC
Q 005240 157 AQLVLGSLDG-T---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l~g-~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~ 230 (706)
++|-++++.. + +..+... ..+..++++-+|..||-.+..+ .-|.+||..+ +.+..+-.+...
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------------TLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------------TLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------------EEEEEEEcCCCcEeeeeecCCch
Confidence 7888888833 3 3445555 7889999999999999777664 4789999874 445554433211
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
.....++||||++. |+..
T Consensus 227 -----------A~iy~iaFSp~~s~-Lavs 244 (346)
T KOG2111|consen 227 -----------ADIYCIAFSPNSSW-LAVS 244 (346)
T ss_pred -----------heEEEEEeCCCccE-EEEE
Confidence 22557899999987 6644
No 455
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=35 Score=39.65 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=39.4
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
-..|||.+.+++..+..+.... ......++.++.++. ........ +..+..+.|||.|..|+|...
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rh-s~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRH-SYTAKYHLYDLNTGE-KLHPPEYE---GSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred cccChhhhhheeccCcccccce-eeEEEEEEEEcCCCC-cccCcccC---CCeeEEEEEcCCCCEEEEEEe
Confidence 3778999999998764221111 334556677777666 11111111 112456899999988888753
No 456
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=90.03 E-value=2.7 Score=47.04 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=62.7
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....++||.++.+|.... +|+ |.++.--+ +.....+...- -...+..+.||+||.+|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~--------dGr--I~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS--------DGR--ILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEecc--------CCc--EEEEeccccccccccceEEEe--cccccceeEEecCCceEeecc-----
Confidence 355899999999988642 444 44443222 22111111110 011377899999999888542
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
..+.|.++.+ +++.+-|..- ..+..+.+|||+..
T Consensus 271 --------------------------------------------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 --------------------------------------------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred --------------------------------------------cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCe
Confidence 1267778888 5564444433 67889999999998
Q ss_pred EEEEee
Q 005240 189 VLITSM 194 (706)
Q Consensus 189 i~~~~~ 194 (706)
.+....
T Consensus 307 ~sl~~~ 312 (792)
T KOG1963|consen 307 YSLVLE 312 (792)
T ss_pred EEEEec
Confidence 766554
No 457
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.95 E-value=20 Score=34.78 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=9.8
Q ss_pred ceeeeecCCCce
Q 005240 396 FLDLFDINTGSK 407 (706)
Q Consensus 396 ~l~~~d~~~g~~ 407 (706)
.|+.+|+++|+.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 688999999863
No 458
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.90 E-value=5.1 Score=43.12 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=36.3
Q ss_pred eEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC---
Q 005240 210 KVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP--- 285 (706)
Q Consensus 210 ~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~--- 285 (706)
.|.+||.++++ ++++.-. .+..+.||++|.. ++.+.. +.+++++.+-
T Consensus 127 ~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~-val~t~-------------~~i~il~~~~~~~ 177 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGEL-VALVTK-------------DSIYILKYNLEAV 177 (443)
T ss_dssp EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSE-EEEE-S--------------SEEEEEE-HHHH
T ss_pred CEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCE-EEEEeC-------------CeEEEEEecchhc
Confidence 48999998554 4444211 1357899999987 665531 1244433310
Q ss_pred ---CCCC---CceEEeecccccccceecCCCceEEEEe
Q 005240 286 ---AEGE---KPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 286 ---~~~~---~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
-+.| ....+......+.+..|-.| .++|+.
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 0111 12233333778888899887 666654
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.70 E-value=21 Score=34.88 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=56.9
Q ss_pred EeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcccccc
Q 005240 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV 88 (706)
Q Consensus 9 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~ 88 (706)
|-.|++ +.|+..++. |.++.....+..-|||..-.. +....|-.++.++.+.++.+-..+ .-+++
T Consensus 85 iGhLdP--~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Wit-----------d~~~aI~R~dpkt~evt~f~lp~~-~a~~n 149 (353)
T COG4257 85 IGHLDP--ATGEVETYP-LGSGASPHGIVVGPDGSAWIT-----------DTGLAIGRLDPKTLEVTRFPLPLE-HADAN 149 (353)
T ss_pred ceecCC--CCCceEEEe-cCCCCCCceEEECCCCCeeEe-----------cCcceeEEecCcccceEEeecccc-cCCCc
Confidence 445655 779999887 788888889999999985433 334488899998887766542222 12334
Q ss_pred ccceEEecCCcEEEEEe
Q 005240 89 FGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~ 105 (706)
.....+.++|. |.|+.
T Consensus 150 let~vfD~~G~-lWFt~ 165 (353)
T COG4257 150 LETAVFDPWGN-LWFTG 165 (353)
T ss_pred ccceeeCCCcc-EEEee
Confidence 67788999997 67764
No 460
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.62 E-value=31 Score=38.22 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=35.2
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.++-.+++|++.++ ..-||+++-.+|+.+.+.+.... ........|++..++|+.
T Consensus 40 c~dst~~~l~~GsS----------~G~lyl~~R~~~~~~~~~~~~~~---~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 40 CVDATEEYLAMGSS----------AGSVYLYNRHTGEMRKLKNEGAT---GITCVRSVSSVEYLVAAG 94 (726)
T ss_pred EeecCCceEEEecc----------cceEEEEecCchhhhcccccCcc---ceEEEEEecchhHhhhhh
Confidence 45666778877643 46899999889998888654322 112234556666666654
No 461
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=89.37 E-value=12 Score=37.63 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=106.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+.+-|-..|++..+ ....+-++|+++|+.+. ||-+.. .++.++.|+-.-+|+....+
T Consensus 153 WVr~vavdP~n~wf~tgs----------~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~ged--- 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGS----------ADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGED--- 214 (460)
T ss_pred eEEEEeeCCCceeEEecC----------CCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCC---
Confidence 566777888777776643 33567778999998664 332222 26788888887776655321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~ 187 (706)
.++--+|| ..+.-+ .-.. ..+.+++.-|.=+
T Consensus 215 ----------------------------------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 215 ----------------------------------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred ----------------------------------------------CeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 35555676 333332 2222 5677888888876
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
.|+ +..+. +.+.+||+.++... .|..+... +..+.+.|-..+ ++-.
T Consensus 249 vl~-t~grD------------st~RvWDiRtr~~V~~l~GH~~~-------------V~~V~~~~~dpq-vit~------ 295 (460)
T KOG0285|consen 249 VLV-TGGRD------------STIRVWDIRTRASVHVLSGHTNP-------------VASVMCQPTDPQ-VITG------ 295 (460)
T ss_pred eEE-ecCCc------------ceEEEeeecccceEEEecCCCCc-------------ceeEEeecCCCc-eEEe------
Confidence 664 44432 57899999866433 33322211 223444444444 4322
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEE
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (706)
.....|.+||+. .+..+..|+.....+..+...|.-..++.
T Consensus 296 ------S~D~tvrlWDl~--agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 296 ------SHDSTVRLWDLR--AGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ------cCCceEEEeeec--cCceeEeeecccceeeEEecCCchhhhhc
Confidence 122358888884 55566778888888888888887554443
No 462
>PLN02454 triacylglycerol lipase
Probab=89.31 E-value=0.73 Score=48.17 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
..+++...|+.++++..-.+-+|.|+|||+||.||+.++..
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 44555666776766532222369999999999999998843
No 463
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=89.10 E-value=2 Score=46.16 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=36.7
Q ss_pred HHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHh----C------CCceeEEEeccCCCCCC
Q 005240 584 SSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 584 ~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~----~------p~~~~a~v~~~~~~d~~ 640 (706)
+|+..++. |+.+.+..-...+.|+|.||||..+-.++.+ . +=-+++++...|..+..
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 55555555 4433333345789999999999866555432 2 11578888888877643
No 464
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=88.74 E-value=33 Score=35.77 Aligned_cols=195 Identities=16% Similarity=0.177 Sum_probs=100.6
Q ss_pred ccceee-CCCCCeEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 33 INFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 33 ~~~~~~-SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.....+ ++++..++.... .....+.+++..+ .....+...... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~--- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLASS--------SLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS--- 175 (466)
T ss_pred eeeEEEECCCcceEEeccC--------CCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC---
Confidence 445555 899984433321 2234677777765 333444333332 567899999995554321
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCc-eecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTA-KDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~-~~lt~~-~~~~~~~~SpDG 186 (706)
. ...+..+++. +.. ..+... ..+..++|+|++
T Consensus 176 ~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 176 L---------------------------------------------DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred C---------------------------------------------CCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 0 1345555653 322 233322 578899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+.++..... ...+.+|+...+.... ....... .. ...|+|++.. ++ ....
T Consensus 211 ~~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~-~~-~~~~-- 261 (466)
T COG2319 211 GLLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHSD------------SV-VSSFSPDGSL-LA-SGSS-- 261 (466)
T ss_pred ceEEEEecC------------CCcEEEEECCCCcEEeeecCCCCc------------ce-eEeECCCCCE-EE-EecC--
Confidence 844444122 1355677766333222 1111100 01 1168898843 33 2111
Q ss_pred CCCccccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
...+.+++. ..... ..+..+...+....|.|++..++... .+ +...+| +..+
T Consensus 262 ---------d~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d-~~~~~~--~~~~ 315 (466)
T COG2319 262 ---------DGTIRLWDL---RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SD-GTVRLW--DLET 315 (466)
T ss_pred ---------CCcEEEeee---cCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CC-CcEEEE--EcCC
Confidence 123566666 22221 22222356677778999888877743 33 345566 6555
No 465
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=88.65 E-value=1.1 Score=43.11 Aligned_cols=34 Identities=35% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEEechHHHHHHHHHHhC--------CCceeEEEeccCCC
Q 005240 604 IAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGSY 637 (706)
Q Consensus 604 i~i~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~~~~ 637 (706)
.||+|+|.||.+|+.++... ...||++|..+|..
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 69999999999998888532 23589999988764
No 466
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=88.54 E-value=1.2 Score=41.99 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=52.3
Q ss_pred eEEEEcCCCCcCCCCCC-CC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC----C---
Q 005240 556 FAVLAGPSIPIIGEGDK-LP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----P--- 624 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~-~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~----p--- 624 (706)
..|++|.||=..-+... .. .....+..+.|+.+|.+|-+++.. +...++|.|||.|+.+...++-.. |
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~ 124 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLRK 124 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHHh
Confidence 45666777633322111 01 233456679999999998877642 236899999999999999998654 1
Q ss_pred CceeEEEeccCCC
Q 005240 625 HLFCCGIARSGSY 637 (706)
Q Consensus 625 ~~~~a~v~~~~~~ 637 (706)
.++.|-+...++.
T Consensus 125 rLVAAYliG~~v~ 137 (207)
T PF11288_consen 125 RLVAAYLIGYPVT 137 (207)
T ss_pred hhheeeecCcccc
Confidence 2455555555543
No 467
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=38 Score=37.00 Aligned_cols=192 Identities=14% Similarity=0.237 Sum_probs=107.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-ceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
++-.+.+.|---|+.-+-. +|..+||-++..+. +.-.++..+ ++...+-+--.+|+..+++
T Consensus 15 RVKsVd~HPtePw~la~Ly--------nG~V~IWnyetqtmVksfeV~~~P-------vRa~kfiaRknWiv~GsDD--- 76 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY--------NGDVQIWNYETQTMVKSFEVSEVP-------VRAAKFIARKNWIVTGSDD--- 76 (794)
T ss_pred ceeeeecCCCCceEEEeee--------cCeeEEEecccceeeeeeeecccc-------hhhheeeeccceEEEecCC---
Confidence 5777888898888876554 56666665553321 122343332 5566666666677765432
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+|-+++. ++ +++..... ..++.++..|.--
T Consensus 77 ----------------------------------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P 110 (794)
T KOG0276|consen 77 ----------------------------------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP 110 (794)
T ss_pred ----------------------------------------------ceEEEEecccceeeEEeeccccceeeeeecCCCC
Confidence 56666777 55 56666655 7889999999988
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+++-++.+ ..|.+|+-+.+- .+....+. +.+-.++|.|...... ++.
T Consensus 111 ~vLtsSDD-------------m~iKlW~we~~wa~~qtfeGH~-------------HyVMqv~fnPkD~ntF--aS~--- 159 (794)
T KOG0276|consen 111 YVLTSSDD-------------MTIKLWDWENEWACEQTFEGHE-------------HYVMQVAFNPKDPNTF--ASA--- 159 (794)
T ss_pred eEEecCCc-------------cEEEEeeccCceeeeeEEcCcc-------------eEEEEEEecCCCccce--eee---
Confidence 88655544 356666665442 22222221 1233566777554312 211
Q ss_pred CCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC--ceEEEEeeccccceEEEEEc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS--LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~l~~~d 330 (706)
.-..++.+|.+ ....+ -.|..+...+..+.+-+-| -+|+..++ +...+||-+.
T Consensus 160 -------sLDrTVKVWsl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD--D~tiKvWDyQ 215 (794)
T KOG0276|consen 160 -------SLDRTVKVWSL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD--DLTIKVWDYQ 215 (794)
T ss_pred -------eccccEEEEEc---CCCCCceeeeccccCcceEEeccCCCcceEEecCC--CceEEEeecc
Confidence 11124667777 22222 3455667777778776654 45555442 2344555443
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.41 E-value=28 Score=35.92 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC--CCCCcccCccCCCCcceeeecCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--EDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~p~~~~~~~~g~~~~~~spdg 253 (706)
+..++++.+||..+ ++...... ......|+.++.+|...+.+.-.... ......-.....|...++++|||
T Consensus 86 D~Egi~~~~~g~~~-is~E~~~~------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFW-ISSEGGRT------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred ChhHeEEecCCCEE-EEeCCccC------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 55577786676544 34333200 00125899999886655554211110 00000000112345589999999
Q ss_pred CceEEEEEeccC-CCCccc---cCccceeeeecCCCCCC-CC-ceEE-ee--------cccccccceecCCCceEEEEee
Q 005240 254 PSTLYWVEAQDR-GDANVE---VSPRDIIYTQPAEPAEG-EK-PEIL-HK--------LDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 254 ~~~l~~~~~~~~-~~~~~~---~~~~~~l~~~d~~~~~~-~~-~~~l-~~--------~~~~~~~~~wspDg~~l~~~~~ 318 (706)
+. |+.+....- .+.... ....-+|+.+|. .. ++ ..+. .. ....+..+.+.+|++.|+....
T Consensus 159 ~~-l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~---~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 159 RT-LFAAMESPLKQDGPRANPDNGSPLRILRYDP---KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred CE-EEEEECccccCCCcccccccCceEEEEEecC---CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 97 655543221 111000 011135667766 32 22 2222 11 2456778899999997666543
Q ss_pred c---cccceEEEEEcCCC
Q 005240 319 Y---KTSQTRTWLVCPGS 333 (706)
Q Consensus 319 ~---~~~~~~l~~~d~~~ 333 (706)
. .....+||.+++..
T Consensus 235 ~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 235 FSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCCCccceEEEEEEEccc
Confidence 1 23567899999876
No 469
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.38 E-value=24 Score=33.69 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=92.2
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEE-
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRT- 326 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l- 326 (706)
..+|+|+. |--...+.++. .......||.+-+ +++++.+...-+.-..+.|+.|.+.+++..+ .+..+
T Consensus 115 kvdP~Gry--y~GtMad~~~~--le~~~g~Ly~~~~----~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~ 183 (310)
T KOG4499|consen 115 KVDPDGRY--YGGTMADFGDD--LEPIGGELYSWLA----GHQVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVD 183 (310)
T ss_pred ccCCCCce--eeeeecccccc--ccccccEEEEecc----CCCceeeehhccCCccccccccCcEEEEEcc---CceEEe
Confidence 46778874 21111222221 2233456887654 5677777766666678899999999998753 23345
Q ss_pred -EEEcCCCCC-CCceeeecCcc-cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEec-CCCCCCCCCCceeeeec
Q 005240 327 -WLVCPGSKD-VAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG-RGFTPEGNIPFLDLFDI 402 (706)
Q Consensus 327 -~~~d~~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~d~ 402 (706)
|.+|..++. .+++.+++-.- ++. =..-|||..| . .++. +|+.. +|. .+..+|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~--------e~~~PDGm~I--D----~eG~--L~Va~~ng~-------~V~~~dp 240 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPF--------ESLEPDGMTI--D----TEGN--LYVATFNGG-------TVQKVDP 240 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCc--------CCCCCCcceE--c----cCCc--EEEEEecCc-------EEEEECC
Confidence 888888865 23444543221 111 1125788766 1 0222 33221 221 4788999
Q ss_pred CCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEE--EecCCCCcEEEEEECCCCceeEeecCCCC
Q 005240 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS--KESKTEITQYHILSWPLKKSSQITNFPHP 473 (706)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~--~~~~~~p~~v~~~~~~~~~~~~lt~~~~~ 473 (706)
.||+.-.-+..+- +...+..|---+--++|+ ....++|-.+ .-|.+.|..-++|.+++.
T Consensus 241 ~tGK~L~eiklPt-----------~qitsccFgGkn~d~~yvT~aa~~~dp~~~-~~~p~aG~iykitgl~~~ 301 (310)
T KOG4499|consen 241 TTGKILLEIKLPT-----------PQITSCCFGGKNLDILYVTTAAKFDDPVRT-NTDPNAGTIYKITGLNAK 301 (310)
T ss_pred CCCcEEEEEEcCC-----------CceEEEEecCCCccEEEEEehhcccCchhc-ccCCCCccEEEecCcccC
Confidence 9998533222221 111123343221123332 2333344333 335556777777776643
No 470
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=88.14 E-value=8.7 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRW 690 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 690 (706)
++.+..++.|.+++...|++..|.-....+..+.++.+.+|
T Consensus 199 ~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 199 EHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred HHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 88888888999999999999999877677777777777766
No 471
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=87.93 E-value=20 Score=34.82 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=34.4
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCc
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPS 255 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~ 255 (706)
...||......|+...++ .+.+||+..- ..+..+... | .+.| .+...||+-|.-
T Consensus 208 ~~S~s~~~~~FAv~~Qdg-------------~~~I~DVR~~~tpm~~~sstr-----p-----~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDG-------------TCAIYDVRNMATPMAEISSTR-----P-----HHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eeeeccCcceEEEEecCC-------------cEEEEEecccccchhhhcccC-----C-----CCCCceEEEEecCCCcc
Confidence 456787777766655442 6778887522 111211111 1 0133 557899998887
Q ss_pred eEEEEE
Q 005240 256 TLYWVE 261 (706)
Q Consensus 256 ~l~~~~ 261 (706)
.|.|++
T Consensus 265 DLLf~s 270 (344)
T KOG4532|consen 265 DLLFIS 270 (344)
T ss_pred eEEEEe
Confidence 787775
No 472
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=87.76 E-value=53 Score=37.23 Aligned_cols=150 Identities=15% Similarity=0.244 Sum_probs=83.3
Q ss_pred cceEEEEccCC-Ccee------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 156 TAQLVLGSLDG-TAKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 156 ~~~l~~~~l~g-~~~~------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
..+|....++| +.++ |.-+ ..+-.++|.=-.+.|+.+.... ..|....+.|.+.+.+...
T Consensus 998 g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g------------~SI~rasL~G~Ep~ti~n~ 1065 (1289)
T KOG1214|consen 998 GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG------------RSISRASLEGAEPETIVNS 1065 (1289)
T ss_pred cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC------------CccccccccCCCCceeecc
Confidence 36788888866 3322 2222 3455677766666776665543 3567777777776665443
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-ccccccee
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSW 306 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~w 306 (706)
... .| .|+ .+.|+ ++. +||... +.++|-+.-+ +|.+.+.|...+ .....++.
T Consensus 1066 ~L~--SP-------EGi-AVDh~--~Rn-~ywtDS-----------~lD~IevA~L---dG~~rkvLf~tdLVNPR~iv~ 1118 (1289)
T KOG1214|consen 1066 GLI--SP-------EGI-AVDHI--RRN-MYWTDS-----------VLDKIEVALL---DGSERKVLFYTDLVNPRAIVV 1118 (1289)
T ss_pred cCC--Cc-------cce-eeeec--cce-eeeecc-----------ccchhheeec---CCceeeEEEeecccCcceEEe
Confidence 321 11 111 23333 333 776621 1223444444 666667776443 33445555
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
-+=+..|+|+.|.. .+..|-..++++ ..-+.|...++.
T Consensus 1119 D~~rgnLYwtDWnR-enPkIets~mDG--~NrRilin~Dig 1156 (1289)
T KOG1214|consen 1119 DPIRGNLYWTDWNR-ENPKIETSSMDG--ENRRILINTDIG 1156 (1289)
T ss_pred ecccCceeeccccc-cCCcceeeccCC--ccceEEeecccC
Confidence 55577788877655 355688888887 445666665543
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.23 E-value=39 Score=34.87 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=37.4
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCc------eeEEEEEcCCCceeecc--c-C-------CCccccccccceEEecCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCK------LRVWIADAETGEAKPLF--E-S-------PDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~------~~l~~~d~~~g~~~~lt--~-~-------~~~~~~~~~~~~~wSpDg 98 (706)
.+++.+||..++-. ++. ..|+.++.++...+.+. . . .....|.++..++++|||
T Consensus 89 gi~~~~~g~~~is~----------E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 89 GIAVPPDGSFWISS----------EGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred HeEEecCCCEEEEe----------CCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 56666666544332 344 88999998854333331 1 1 112235568899999999
Q ss_pred cEEEEEe
Q 005240 99 TLLIFTI 105 (706)
Q Consensus 99 ~~l~~~~ 105 (706)
+.|+...
T Consensus 159 ~~l~~~~ 165 (326)
T PF13449_consen 159 RTLFAAM 165 (326)
T ss_pred CEEEEEE
Confidence 9777664
No 474
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=86.71 E-value=5.3 Score=38.47 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d 638 (706)
..=+..++.||.++..+ .++-+.||||||......+..+.+ .++-.|+.++.++
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 34455788899888666 578999999999999888877632 3566666666655
No 475
>PLN02408 phospholipase A1
Probab=86.56 E-value=1.2 Score=45.89 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+...|+.++++..-.+.+|.|.|||+||.||..++..
T Consensus 183 qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 183 MVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 34444555555432223479999999999999888754
No 476
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=86.55 E-value=9.5 Score=40.88 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=76.3
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCc---hHHHHHHH-CCeEEE
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP---TSSLIFLA-RRFAVL 559 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~G~~v~ 559 (706)
.+.+....+..+..|++.-.. ++.. -|+||++-|||=++.-.+-..-.||......+. ...-.|.+ ....-|
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfL 123 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFL 123 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEE
Confidence 444454567889999987654 3333 489999999986542221111122222211100 00001222 222223
Q ss_pred E-cCCCCcCCCCCCCCch-----hhHHHHHHHHHHH-HHHHHHcCCCCCCcEEEEEechHHHHHHHH----HHhC-----
Q 005240 560 A-GPSIPIIGEGDKLPND-----RFVEQLVSSAEAA-VEEVVRRGVADPSRIAVGGHSYGAFMTAHL----LAHA----- 623 (706)
Q Consensus 560 ~-~~~~~~~g~g~~~~~~-----~~~~~~~~D~~~~-~~~l~~~~~id~~~i~i~G~S~GG~~a~~~----~~~~----- 623 (706)
. |-+ .|+ ++... .--+...+|.-.+ ++|+.+-+.--.+...|.|-||+|+-+-.+ .-.+
T Consensus 124 d~PvG---vGF--SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~ 198 (454)
T KOG1282|consen 124 DQPVG---VGF--SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCK 198 (454)
T ss_pred ecCCc---CCc--cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccC
Confidence 3 222 232 22211 1112334555444 457766544445789999999999654444 3333
Q ss_pred C-CceeEEEeccCCCCCC
Q 005240 624 P-HLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 p-~~~~a~v~~~~~~d~~ 640 (706)
| --+++.+...|+.|..
T Consensus 199 ~~iNLkG~~IGNg~td~~ 216 (454)
T KOG1282|consen 199 PNINLKGYAIGNGLTDPE 216 (454)
T ss_pred CcccceEEEecCcccCcc
Confidence 1 1488999999988744
No 477
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=86.06 E-value=1.7 Score=42.36 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccC
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSG 635 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~ 635 (706)
....++...++.++++. ...+|.+.|||+||.+|..++..- +..+.+..-.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P 166 (229)
T cd00519 109 SLYNQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQP 166 (229)
T ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 34455555555555442 236899999999999998887652 234555544444
No 478
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.78 E-value=2.2 Score=46.80 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=65.0
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|-++|| .+ ..+.|+.. .....+.|.|=|.+.+-.+.. .++.+||...+........ .
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~s-~---- 153 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYKS-H---- 153 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc-------------ccceehhhhccCceeeecC-C----
Confidence 57888899 55 56777766 566788899999887433322 4677888762222111111 0
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~ 311 (706)
..+++-+.++|||+. ++ ++++.. .+.+||+ .-|++ .......+.+..+.+.|-.-
T Consensus 154 -------~~vv~~l~lsP~Gr~-v~-----~g~ed~-------tvki~d~---~agk~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 154 -------TRVVDVLRLSPDGRW-VA-----SGGEDN-------TVKIWDL---TAGKLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred -------cceeEEEeecCCCce-ee-----ccCCcc-------eeeeecc---cccccccccccccccccccccCchhh
Confidence 123456799999985 32 333321 3667776 22332 22233456666666666543
No 479
>PLN02571 triacylglycerol lipase
Probab=85.71 E-value=1.4 Score=46.06 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+...++.++++..-..-+|.|+|||+||.||+.++..
T Consensus 210 vl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 210 VLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 3344444544321112379999999999999888754
No 480
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=85.57 E-value=13 Score=40.12 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=86.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeecccccc-ccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDN-VSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~-~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.||-+..+.. ++...+..+-+....-.+.||-...+..++.... .+ .++...+-.+++...++.+++.-. .-
T Consensus 184 aNl~L~~~~~----~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s--~s~~g~~~~d~ciYE~~r~klqrvsvt-si 256 (545)
T PF11768_consen 184 ANLHLLSCSG----GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS--ISVKGEPSADSCIYECSRNKLQRVSVT-SI 256 (545)
T ss_pred ccEEEEEecC----CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe--cCCCCCceeEEEEEEeecCceeEEEEE-EE
Confidence 4677777765 7777765444444566788888555555655310 00 012223344555555666555211 11
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+...+...+++|+.++|+....+ +.|.++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~D-------------------------------------------------gSiiLyD 287 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCED-------------------------------------------------GSIILYD 287 (545)
T ss_pred ecCCcceEEecCcccceEEEEecC-------------------------------------------------CeEEEEE
Confidence 123336688999999998876421 5677778
Q ss_pred cCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 164 LDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 164 l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
.+-+.+.++.. -.+.-++|.|||..+++.+..+ ++.+||+.-+
T Consensus 288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG-------------elQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG-------------ELQCFDMALS 331 (545)
T ss_pred cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCc-------------eEEEEEeecC
Confidence 74434444333 3456889999998887666543 7888887633
No 481
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=85.55 E-value=3.2 Score=52.08 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=46.0
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---CCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~---~p~~~~a 629 (706)
..++.|+..... |.+.........+...+++.+.++.+. . ..+..+.|||+||.++..++.+ .++++..
T Consensus 1092 ~~~~~v~~~~~~---g~~~~~~~~~~l~~la~~~~~~i~~~~----~-~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGIQSP---RPDGPMQTATSLDEVCEAHLATLLEQQ----P-HGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHhhC----C-CCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 346777663332 333222223345566666665554331 1 2479999999999999999875 4677777
Q ss_pred EEeccC
Q 005240 630 GIARSG 635 (706)
Q Consensus 630 ~v~~~~ 635 (706)
++...+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 776554
No 482
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.22 E-value=2.6 Score=46.23 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=46.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|+++||.+ ++ .+..|..+. ....+.|+|=|.+.|--+. + .++-++|..-.-+.....+.
T Consensus 93 tiK~wDlee----Ak--~vrtLtgh~~~~~sv~f~P~~~~~a~gSt--------d--td~~iwD~Rk~Gc~~~~~s~--- 153 (825)
T KOG0267|consen 93 TIKVWDLEE----AK--IVRTLTGHLLNITSVDFHPYGEFFASGST--------D--TDLKIWDIRKKGCSHTYKSH--- 153 (825)
T ss_pred ceeeeehhh----hh--hhhhhhccccCcceeeeccceEEeccccc--------c--ccceehhhhccCceeeecCC---
Confidence 588999965 43 333444442 4677889999988744322 2 44555555422222222111
Q ss_pred ccccccceEEecCCcEEEEE
Q 005240 85 LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~ 104 (706)
...+..+.++|||++++..
T Consensus 154 -~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 154 -TRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -cceeEEEeecCCCceeecc
Confidence 1136788999999988854
No 483
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=1.6 Score=48.54 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHc--C---C--CCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 578 FVEQLVSSAEAAVEEVVRR--G---V--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~--~---~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
...+..+-+.+||+++.+. + + --|..|++.||||||..|..+++.. +....
T Consensus 151 ~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlk-n~~~~ 208 (973)
T KOG3724|consen 151 ILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLK-NEVQG 208 (973)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhh-hhccc
Confidence 3444566667777777763 2 1 2377899999999999998877664 43333
No 484
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=84.99 E-value=3.8 Score=30.44 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=24.6
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCC
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg 522 (706)
....|+..+.+.||.-+..+-+.++.-......+.|.|++.||=
T Consensus 9 GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 9 GYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp T---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred CCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 45789999999999999888886665211222345778889983
No 485
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=84.83 E-value=26 Score=34.79 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=79.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC-chHHHHHHHCCeEEEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA 560 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~ 560 (706)
.++-.+.+..| .++..++--++ ++.|+||-.|.=+- ... .-|...+ ...++.+..+ |.|+-
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~------~~kpaiiTyhDlgl--------N~~--scFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK------GNKPAIITYHDLGL--------NHK--SCFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC------CCCceEEEeccccc--------chH--hHhHHhhcCHhHHHHHhh-eEEEe
Confidence 44555555445 67777775432 12478888885211 110 1121111 2334556666 77765
Q ss_pred cCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++..|..--...+..+ ..+++..+++..+++++. =+-|.-+|--.|+++-...|..+|+++-++|+..+..
T Consensus 84 V~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 84 VDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred cCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 3332110001112221 246677777888777762 2568899999999999999999999999999998765
Q ss_pred C
Q 005240 638 N 638 (706)
Q Consensus 638 d 638 (706)
.
T Consensus 158 ~ 158 (326)
T KOG2931|consen 158 C 158 (326)
T ss_pred C
Confidence 4
No 486
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=84.81 E-value=35 Score=37.49 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=31.6
Q ss_pred CcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTL 641 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~ 641 (706)
..|+..+.|-||..++.++-++-+ ++.+++..-|..+...
T Consensus 285 T~VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~~ 325 (690)
T PF10605_consen 285 TLVIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLPP 325 (690)
T ss_pred eEEEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCCC
Confidence 357778999999999999988744 6888888888776553
No 487
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.74 E-value=17 Score=40.84 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccc-cccceEEecCCcEEEEEec
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA-VFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wSpDg~~l~~~~~ 106 (706)
++.....|.|.++| +|. +... +..+..-|++... +|+...+.. . .+.+ .+..+..|+||-++++...
T Consensus 407 ~~~~Lt~PS~d~~g-~vW-tvd~-----~~~~~~vl~v~~~-~G~~~~V~~-~--~l~g~~I~~lrvSrDG~RvAvv~~ 474 (599)
T PRK13613 407 ADGRLTSPSWDGRG-DLW-VVDR-----DPADPRLLWLLQG-DGEPVEVRT-P--ELDGHRVVAVRVARDGVRVALIVE 474 (599)
T ss_pred ccCcccCCcCcCCC-CEE-EecC-----CCCCceEEEEEcC-CCcEEEeec-c--ccCCCEeEEEEECCCccEEEEEEe
Confidence 44468899999998 664 3321 1122223666654 566554432 1 2222 4889999999999888754
No 488
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=84.72 E-value=2.1 Score=44.34 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCcEEEEEechHHHHHHHHHHhCC--CceeEEEeccCCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGSY 637 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~~p--~~~~a~v~~~~~~ 637 (706)
..+|.+.||||||.++.+++...+ .+++..+..++..
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 379999999999999999998887 7899998888653
No 489
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=84.62 E-value=13 Score=41.13 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=24.5
Q ss_pred EEEEcc-CCCceecCCC---ceEeeeeeCCCCcEEEEE
Q 005240 159 LVLGSL-DGTAKDFGTP---AVYTAVEPSPDQKYVLIT 192 (706)
Q Consensus 159 l~~~~l-~g~~~~lt~~---~~~~~~~~SpDG~~i~~~ 192 (706)
++..+. .|+++++... ..+..+.|+|||+.|++.
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 445555 5577776544 578899999999998654
No 490
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=84.55 E-value=2.9 Score=42.97 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=48.8
Q ss_pred cCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 540 ~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
|..........|.++|+-|+-.+... -|.....-++...|+...+++..++ ....|+.++|.|+|+=+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLR------YfW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADv 339 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLR------YFWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADV 339 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhh------hhhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchh
Confidence 33344567788999999998644431 1333344567788999999988775 34689999999999744
No 491
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=84.26 E-value=66 Score=35.34 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec--ccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
-+.+.+|-| |+.+.... .|...+..+|+++++..-. ..+.. +.+.+..++|+...++++.
T Consensus 102 AifDl~wap-ge~~lVsa---------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSA---------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred eeEeeccCC-CceeEEEc---------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceeec
Confidence 456789999 77665543 5667888888888776544 22221 2367888999888777664
No 492
>PLN02324 triacylglycerol lipase
Probab=84.19 E-value=1.9 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~ 621 (706)
+...|..|+++..-..-+|.|+|||+||.||+.++.
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 334455555543211248999999999999988875
No 493
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.12 E-value=45 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.021 Sum_probs=33.6
Q ss_pred cCccceeeeecCCCCCCCCceEEeec----------------ccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 272 VSPRDIIYTQPAEPAEGEKPEILHKL----------------DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
++..+.|.++|. ++|++...... ..-...++|.|++..|+.+. + .+..+|.+.+.
T Consensus 191 VW~td~I~~Idp---~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG--K-~Wp~lyeV~l~ 261 (264)
T PF05096_consen 191 VWQTDRIVRIDP---ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG--K-LWPKLYEVKLV 261 (264)
T ss_dssp ETTSSEEEEEET---TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE--T-T-SEEEEEEEE
T ss_pred eCCCCeEEEEeC---CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe--C-CCCceEEEEEE
Confidence 455667888888 77776653211 12356788988888777753 2 56778877643
No 494
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=84.11 E-value=39 Score=37.98 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=37.3
Q ss_pred eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 23 ~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
.+++.+....-..+-|||.| .|||.+ ..-+.++|.-+-+..|....+.. .+..+.|+|--
T Consensus 8 tlpG~l~~sN~~A~Dw~~~G-LiAygs-----------hslV~VVDs~s~q~iqsie~h~s----~V~~VrWap~~ 67 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSPSG-LIAYGS-----------HSLVSVVDSRSLQLIQSIELHQS----AVTSVRWAPAP 67 (1062)
T ss_pred cCCCCCCcccccccccCccc-eEEEec-----------CceEEEEehhhhhhhhccccCcc----ceeEEEeccCC
Confidence 34444433356677899976 899954 46788898766554444322221 26788898754
No 495
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.60 E-value=30 Score=37.71 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC---
Q 005240 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--- 165 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~--- 165 (706)
+..++|. ||+.++.+ .|+..+-.
T Consensus 22 vhGlaWT-DGkqVvLT-----------------------------------------------------~L~l~~gE~kf 47 (671)
T PF15390_consen 22 VHGLAWT-DGKQVVLT-----------------------------------------------------DLQLHNGEPKF 47 (671)
T ss_pred ccceEec-CCCEEEEE-----------------------------------------------------eeeeeCCcccc
Q ss_pred CCceecCCCceEeeeeeCCCC-----cEEEEEeeccCcccccccccccceEEEEecC---CCeeEEcccCCCCCCCCccc
Q 005240 166 GTAKDFGTPAVYTAVEPSPDQ-----KYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 166 g~~~~lt~~~~~~~~~~SpDG-----~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~p~~~ 237 (706)
|..+.+.....+.++.|+|-+ ..||+.... .+-+|-+. ...-+.+..-.-.-..|+..
T Consensus 48 Gds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkk--------------hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 48 GDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKK--------------HVTVWQLCPSTTERNKLLMSQTCEIREPFPV 113 (671)
T ss_pred CCccEeeccceeeeeeecCcccCCCCceEEEeccc--------------eEEEEEeccCccccccceeeeeeeccCCccc
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
- +....|.|...- |.+....+-.--.. +.. ++..++.=.+..+.+--..|.+||.+|+.+.
T Consensus 114 L-----pQGCVWHPk~~i-L~VLT~~dvSV~~s-------V~~------d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 114 L-----PQGCVWHPKKAI-LTVLTARDVSVLPS-------VHC------DSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred C-----CCcccccCCCce-EEEEecCceeEeee-------eee------CCceEEEeccCCceEEEEEecCcCCEEEEEe
Q ss_pred eccccceEEEEEc
Q 005240 318 WYKTSQTRTWLVC 330 (706)
Q Consensus 318 ~~~~~~~~l~~~d 330 (706)
+...+-|++|
T Consensus 175 ---GSsLHSyiWd 184 (671)
T PF15390_consen 175 ---GSSLHSYIWD 184 (671)
T ss_pred ---CCeEEEEEec
No 496
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=83.45 E-value=5.8 Score=41.93 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=51.3
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEG----DKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g----~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~ 621 (706)
...+.|.+ |+.|+..+-. ..+.- ..+.-+++ +.-+..+++++ .++ +-++|.|+||.+++.+++
T Consensus 121 S~V~~Ll~-g~dVYl~DW~-~p~~vp~~~~~f~ldDY----i~~l~~~i~~~------G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWV-NARMVPLSAGKFDLEDY----IDYLIEFIRFL------GPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHhC-CCcEEEEeCC-CCCCCchhcCCCCHHHH----HHHHHHHHHHh------CCC-CcEEEEchhhHHHHHHHH
Confidence 34566777 9999873321 11100 11111223 32333444433 334 999999999999776654
Q ss_pred hC-----CCceeEEEeccCCCCCCCCC
Q 005240 622 HA-----PHLFCCGIARSGSYNKTLTP 643 (706)
Q Consensus 622 ~~-----p~~~~a~v~~~~~~d~~~~~ 643 (706)
.. |.+++.++.+++..|....|
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~~~p 214 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDARASP 214 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCCCCC
Confidence 43 56799999999988866543
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.36 E-value=36 Score=33.27 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=47.5
Q ss_pred EeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCc-ccc
Q 005240 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI-CLN 86 (706)
Q Consensus 9 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~-~~~ 86 (706)
++|+.+ ++.+.+. +..+...+.-.+-|||+.|...... ++...+.+++..+ ...-..+..... ...
T Consensus 50 ~yD~~t----n~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~-------~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 50 EYDPNT----NTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDN-------DGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred EEecCC----CcEEecc-CCCCCcccCcCCCCCCCEEEeCCCC-------ccccceEEEecCCCCCCCCceECcccccCC
Confidence 567766 8888886 5667778888999999998664321 3445555565443 111111111111 001
Q ss_pred ccccceEEecCCcEEEEEe
Q 005240 87 AVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 87 ~~~~~~~wSpDg~~l~~~~ 105 (706)
.-+....--|||+.|+...
T Consensus 118 RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred CccccceECCCCCEEEEeC
Confidence 1122334458999888763
No 498
>PLN02802 triacylglycerol lipase
Probab=82.90 E-value=1.9 Score=46.14 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 584 ~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+++...++.++++..-..-+|.|+|||+||.||..++..
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 344555555655432122479999999999999887743
No 499
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.60 E-value=18 Score=39.93 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=33.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
-+.+..|.-||.+|..+-. ...+.+-.++|....-- ...+. ....+.||+|.+.+.|.
T Consensus 117 vV~SmsWn~dG~kIcIvYe----------DGavIVGsvdGNRIwgK-eLkg~----~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYE----------DGAVIVGSVDGNRIWGK-ELKGQ----LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEc----------cCCEEEEeeccceecch-hcchh----eccceeecccHHHHHhh
Confidence 3567789999999977532 23455555555432100 00000 13356899999988775
No 500
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.58 E-value=35 Score=35.34 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=28.8
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc--cccccccceEEecC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNN 97 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wSpD 97 (706)
...++|.|||+.++- .....||+++.++.....+.....- ....+...++++|+
T Consensus 4 P~~~a~~pdG~l~v~-----------e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-----------ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-----------ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-----------eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 456899999866543 2247899998444332333322110 11223457788884
Done!