Query 005241
Match_columns 706
No_of_seqs 352 out of 1754
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 20:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 3.7E-96 8E-101 834.6 32.1 624 47-698 51-705 (714)
2 PRK10334 mechanosensitive chan 100.0 1.1E-36 2.3E-41 321.9 32.7 221 468-699 61-283 (286)
3 PRK11281 hypothetical protein; 100.0 3.3E-34 7.1E-39 344.5 38.8 220 468-697 870-1092(1113)
4 PRK10929 putative mechanosensi 100.0 8.1E-34 1.8E-38 339.9 34.4 223 466-698 865-1090(1109)
5 PF00924 MS_channel: Mechanose 100.0 1.9E-32 4.1E-37 276.0 22.5 202 478-684 2-206 (206)
6 COG3264 Small-conductance mech 100.0 3.9E-32 8.5E-37 310.6 27.6 260 407-695 550-812 (835)
7 PRK11465 putative mechanosensi 100.0 2.1E-30 4.5E-35 299.2 30.7 218 468-697 505-726 (741)
8 COG0668 MscS Small-conductance 100.0 2E-28 4.3E-33 261.2 31.5 213 474-697 85-301 (316)
9 KOG0044 Ca2+ sensor (EF-Hand s 89.3 0.65 1.4E-05 47.0 5.4 86 392-479 60-152 (193)
10 COG5126 FRQ1 Ca2+-binding prot 89.1 0.68 1.5E-05 45.4 5.3 57 396-454 56-120 (160)
11 cd00052 EH Eps15 homology doma 88.6 1.1 2.4E-05 36.1 5.6 56 399-455 2-62 (67)
12 PF00036 EF-hand_1: EF hand; 87.7 0.62 1.3E-05 32.4 2.9 28 426-454 1-28 (29)
13 cd05022 S-100A13 S-100A13: S-1 87.2 2.6 5.6E-05 37.3 7.3 65 392-457 4-78 (89)
14 PF13499 EF-hand_7: EF-hand do 87.0 1.6 3.6E-05 35.3 5.6 53 399-452 3-66 (66)
15 smart00027 EH Eps15 homology d 86.7 2.8 6E-05 37.1 7.3 62 395-457 9-75 (96)
16 cd05026 S-100Z S-100Z: S-100Z 86.4 2.4 5.1E-05 37.6 6.7 63 392-455 6-82 (93)
17 cd05023 S-100A11 S-100A11: S-1 83.7 3.2 6.9E-05 36.7 6.2 62 393-455 6-81 (89)
18 cd05029 S-100A6 S-100A6: S-100 82.9 2.7 5.8E-05 37.0 5.4 62 393-455 7-80 (88)
19 cd00213 S-100 S-100: S-100 dom 82.8 4 8.6E-05 35.3 6.4 62 393-455 5-80 (88)
20 cd05025 S-100A1 S-100A1: S-100 82.8 4.2 9E-05 35.7 6.6 62 393-455 6-81 (92)
21 KOG0027 Calmodulin and related 80.6 3.7 8E-05 39.4 5.9 59 398-457 46-116 (151)
22 cd05030 calgranulins Calgranul 80.2 4.8 0.0001 35.2 6.0 63 392-455 4-80 (88)
23 cd05031 S-100A10_like S-100A10 77.3 7.4 0.00016 34.3 6.4 62 392-454 4-79 (94)
24 PRK12309 transaldolase/EF-hand 75.3 4.6 9.9E-05 45.4 5.5 64 387-457 325-388 (391)
25 PF13833 EF-hand_8: EF-hand do 74.5 8.1 0.00017 30.0 5.3 43 411-454 3-53 (54)
26 PTZ00183 centrin; Provisional 73.5 7.4 0.00016 36.7 5.8 56 396-452 90-152 (158)
27 KOG0028 Ca2+-binding protein ( 73.2 6.2 0.00013 38.7 5.0 56 399-455 72-135 (172)
28 cd00051 EFh EF-hand, calcium b 71.5 7.9 0.00017 29.4 4.6 52 399-451 3-61 (63)
29 PTZ00184 calmodulin; Provision 70.5 10 0.00022 35.1 5.9 56 396-452 84-146 (149)
30 KOG0034 Ca2+/calmodulin-depend 69.9 7.6 0.00016 39.2 5.1 61 396-457 66-135 (187)
31 cd05027 S-100B S-100B: S-100B 69.9 14 0.00031 32.4 6.3 62 393-455 5-80 (88)
32 PLN02964 phosphatidylserine de 68.4 9.4 0.0002 45.5 6.2 58 396-454 179-243 (644)
33 PF13405 EF-hand_6: EF-hand do 68.0 5.9 0.00013 27.5 2.8 26 427-453 2-27 (31)
34 PTZ00184 calmodulin; Provision 64.5 12 0.00027 34.5 5.2 58 397-455 48-113 (149)
35 PRK11281 hypothetical protein; 62.7 18 0.00038 46.0 7.3 76 151-229 810-898 (1113)
36 PF13202 EF-hand_5: EF hand; P 61.0 8.3 0.00018 25.8 2.3 23 428-451 2-24 (25)
37 smart00739 KOW KOW (Kyprides, 59.8 14 0.0003 24.7 3.3 21 537-557 1-26 (28)
38 PTZ00183 centrin; Provisional 58.5 26 0.00057 32.8 6.3 58 397-455 54-119 (158)
39 PF09279 EF-hand_like: Phospho 56.2 28 0.0006 29.7 5.5 54 399-453 3-68 (83)
40 PRK05585 yajC preprotein trans 54.4 29 0.00062 31.8 5.5 37 537-573 52-89 (106)
41 cd00252 SPARC_EC SPARC_EC; ext 53.4 34 0.00074 31.8 5.9 60 392-452 44-106 (116)
42 COG5126 FRQ1 Ca2+-binding prot 50.1 28 0.00061 34.3 5.0 54 399-453 95-155 (160)
43 PF12763 EF-hand_4: Cytoskelet 50.0 55 0.0012 29.9 6.5 58 397-456 11-73 (104)
44 PF09953 DUF2187: Uncharacteri 49.4 49 0.0011 27.0 5.3 20 538-557 4-24 (57)
45 TIGR00739 yajC preprotein tran 47.4 56 0.0012 28.6 5.9 37 537-573 37-74 (84)
46 cd04466 S1_YloQ_GTPase S1_YloQ 44.5 30 0.00065 28.1 3.7 29 536-564 36-67 (68)
47 PF13499 EF-hand_7: EF-hand do 44.4 32 0.00069 27.6 3.8 30 427-457 2-31 (66)
48 PF14801 GCD14_N: tRNA methylt 43.2 14 0.0003 29.7 1.4 19 535-553 3-21 (54)
49 PF04341 DUF485: Protein of un 43.1 46 0.001 29.4 4.9 72 116-188 4-77 (91)
50 COG5346 Predicted membrane pro 42.8 1.9E+02 0.0042 27.2 8.8 14 506-519 115-128 (136)
51 PF13782 SpoVAB: Stage V sporu 42.4 49 0.0011 30.6 5.0 53 128-188 18-70 (110)
52 KOG0027 Calmodulin and related 41.0 41 0.00089 32.1 4.6 56 396-452 85-147 (151)
53 COG1862 YajC Preprotein transl 40.6 1E+02 0.0022 27.9 6.6 37 538-574 44-81 (97)
54 PRK10929 putative mechanosensi 40.2 44 0.00095 42.5 5.7 75 152-229 808-895 (1109)
55 PF08566 Pam17: Mitochondrial 39.5 88 0.0019 31.2 6.6 32 495-526 71-102 (173)
56 PF09926 DUF2158: Uncharacteri 39.3 28 0.00061 27.9 2.5 20 538-557 1-22 (53)
57 smart00054 EFh EF-hand, calciu 38.8 30 0.00066 21.5 2.4 26 427-453 2-27 (29)
58 PF04156 IncA: IncA protein; 36.1 1.4E+02 0.0031 29.5 7.8 61 470-537 3-64 (191)
59 PRK12281 rplX 50S ribosomal pr 35.8 80 0.0017 27.2 5.0 22 537-558 6-32 (76)
60 PRK05886 yajC preprotein trans 35.5 1E+02 0.0022 28.5 5.9 37 537-573 38-75 (109)
61 PF10003 DUF2244: Integral mem 34.9 2.3E+02 0.005 27.0 8.6 56 490-558 25-80 (140)
62 PF00467 KOW: KOW motif; Inte 33.6 67 0.0014 22.6 3.5 19 540-558 1-24 (32)
63 KOG3817 Uncharacterized conser 33.4 46 0.00099 36.7 3.8 115 158-272 131-291 (452)
64 COG4873 Uncharacterized protei 33.2 37 0.0008 28.4 2.4 43 515-561 5-48 (81)
65 PF10329 DUF2417: Region of un 32.9 3.9E+02 0.0084 28.1 10.4 29 238-266 177-206 (232)
66 PF14023 DUF4239: Protein of u 30.5 3.5E+02 0.0075 27.2 9.6 7 533-539 189-195 (209)
67 PRK05415 hypothetical protein; 29.8 96 0.0021 34.3 5.6 26 491-516 277-302 (341)
68 PRK13889 conjugal transfer rel 28.6 76 0.0016 40.1 5.2 43 536-578 599-651 (988)
69 PF13253 DUF4044: Protein of u 28.0 36 0.00077 25.1 1.3 28 122-149 4-32 (35)
70 TIGR02768 TraA_Ti Ti-type conj 27.9 80 0.0017 38.6 5.2 43 536-578 606-658 (744)
71 TIGR01299 synapt_SV2 synaptic 27.8 7E+02 0.015 30.7 13.1 7 62-68 45-51 (742)
72 PF01618 MotA_ExbB: MotA/TolQ/ 27.5 5.3E+02 0.011 24.3 11.2 24 474-497 62-85 (139)
73 PHA02513 V1 structural protein 26.8 2E+02 0.0044 26.6 6.2 26 420-446 20-45 (135)
74 PF02559 CarD_CdnL_TRCF: CarD- 26.5 1.7E+02 0.0037 25.8 5.8 42 538-579 2-52 (98)
75 PRK06531 yajC preprotein trans 26.2 1.7E+02 0.0037 27.2 5.8 37 538-575 37-76 (113)
76 COG4709 Predicted membrane pro 25.6 5.3E+02 0.011 26.3 9.4 7 399-405 30-36 (195)
77 cd01854 YjeQ_engC YjeQ/EngC. 25.2 1E+02 0.0022 33.0 4.8 42 536-577 33-80 (287)
78 PF03526 Microcin: Colicin E1 24.9 81 0.0018 25.4 2.9 35 245-279 8-42 (55)
79 PF07086 DUF1352: Protein of u 24.7 1.3E+02 0.0028 30.5 5.1 58 123-181 33-92 (186)
80 PRK08559 nusG transcription an 24.2 2E+02 0.0042 27.9 6.2 43 536-578 93-145 (153)
81 COG4818 Predicted membrane pro 24.1 58 0.0013 29.3 2.2 43 182-229 14-57 (105)
82 cd04461 S1_Rrp5_repeat_hs8_sc7 23.9 2.4E+02 0.0052 23.8 6.1 58 538-600 12-69 (83)
83 CHL00141 rpl24 ribosomal prote 23.7 93 0.002 27.3 3.4 22 537-558 8-34 (83)
84 COG3083 Predicted hydrolase of 23.4 3.7E+02 0.0079 31.5 8.8 44 118-164 7-53 (600)
85 KOG0034 Ca2+/calmodulin-depend 23.0 1.1E+02 0.0025 30.8 4.4 61 391-453 29-94 (187)
86 PRK12585 putative monovalent c 23.0 3.1E+02 0.0067 27.9 7.3 16 521-537 67-82 (197)
87 PRK11465 putative mechanosensi 22.8 2.6E+02 0.0057 34.2 8.0 51 212-262 432-486 (741)
88 PF03829 PTSIIA_gutA: PTS syst 22.8 94 0.002 29.0 3.4 24 535-558 49-72 (117)
89 cd03685 ClC_6_like ClC-6-like 22.4 1E+02 0.0022 35.5 4.4 21 166-186 77-97 (466)
90 PF12575 DUF3753: Protein of u 22.3 32 0.00069 29.3 0.2 16 128-143 47-62 (72)
91 PF06570 DUF1129: Protein of u 22.2 1.1E+02 0.0023 31.2 4.1 17 178-194 120-136 (206)
92 PF08726 EFhand_Ca_insen: Ca2+ 22.2 81 0.0018 26.7 2.6 35 400-435 10-44 (69)
93 KOG0924 mRNA splicing factor A 21.6 98 0.0021 37.3 3.9 15 391-405 410-424 (1042)
94 PF00575 S1: S1 RNA binding do 21.5 3.2E+02 0.0068 22.2 6.2 57 538-599 2-58 (74)
95 PF06107 DUF951: Bacterial pro 21.2 2E+02 0.0043 23.6 4.5 42 538-579 2-49 (57)
96 PRK00409 recombination and DNA 21.1 2.8E+02 0.0061 34.2 8.0 44 536-579 635-680 (782)
97 cd05026 S-100Z S-100Z: S-100Z 21.0 1.1E+02 0.0024 26.9 3.4 30 426-455 11-41 (93)
98 COG2139 RPL21A Ribosomal prote 20.9 1.4E+02 0.0029 27.1 3.8 35 535-569 30-79 (98)
99 PF10762 DUF2583: Protein of u 20.7 79 0.0017 27.8 2.3 17 243-259 43-59 (89)
100 PRK00098 GTPase RsgA; Reviewed 20.6 1E+02 0.0023 33.1 3.8 33 536-568 36-71 (298)
101 PRK05609 nusG transcription an 20.4 2.2E+02 0.0047 28.0 5.8 43 535-577 124-176 (181)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.7e-96 Score=834.62 Aligned_cols=624 Identities=41% Similarity=0.724 Sum_probs=546.3
Q ss_pred CCCccccccccccCCCCccccCCCC-CCCC-cccC--------CCCCCCCCCCC-------CCCC-------CCCCCChh
Q 005241 47 TPKTNKTVRGLSFSKPKARFAEPNH-LLPP-KTII--------ESDDHQPLNPR-------DDAS-------SSSDDDDE 102 (706)
Q Consensus 47 ~~~~~~~~~~~~~~~~ksr~~~~~~-~~~~-~~~~--------~~~~~~~~~~~-------~~~~-------~~~~~d~~ 102 (706)
...+++++++..|++++.||.|+.+ .... ...+ .+..+.|..|. ++.. .+.|++++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~~~~s~~f~p~~~~~~n~~~~~~~~~s~~~a~~~~~~e~~ 130 (714)
T KOG4629|consen 51 GRVRRRSLPYILYSQEELRRTEYGETVRCTSRKMPSMIFFASKRSRDFDPAEPNNRNRFSNSGETTSGELAPSEKDEEES 130 (714)
T ss_pred chhhhccccceecccccccccCCcceEEeccccChHhhhhhhhcccccCCCCCCCCCcccCccccccccccCCccccccc
Confidence 4567778888999999999988743 1110 0000 01112332211 1110 11122222
Q ss_pred hhhcCCCCCCCchhhHHHHHhhhccchHHHHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHhhhhhhh
Q 005241 103 WFENIGGDGEDDTQAKYRKRKERKINKRALIEWTLFLIIMTCLVCSLTLRSLQDKLQWGLELWKWCLMILVLFCGRLVSG 182 (706)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~w~~~~~~~~~li~sl~i~~~~~~~~w~~~lw~W~~~~~v~~~grlvs~ 182 (706)
.+-.+..+++ .++.+.+++.+++|+.+++++.+++|+|.|+..+...+|++..|+||+.+++.+||++++.
T Consensus 131 ~~~~~~l~~~---------~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~ 201 (714)
T KOG4629|consen 131 IFSEEKLPDE---------TRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSS 201 (714)
T ss_pred ccchhccchh---------hhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHh
Confidence 3555555432 2346778999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhheehheehhhhhcceeEEEEecccccchhhHHHH-HHHHHHHhhc-cCCCCCh--hHHHHHHHHHHHHHHHHHHHH
Q 005241 183 WVVGFLVFLIERNFMLREKVLYFVYGLRKSFQNCAWLG-FALVSWMILF-PNVHKHN--PVLKKIFRALVAVLIGATIWL 258 (706)
Q Consensus 183 w~v~~~v~~ie~nfll~k~vLyfv~gl~k~v~~~iW~~-~vl~~w~~lf-~~v~~~~--~~l~~v~kvL~~~lv~a~l~l 258 (706)
|.+++++|++++|+++|+++|||+||+++.+|+|+|++ +++++|..+| ..+.++. +.+..++++ +|++++++.|+
T Consensus 202 ~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~~~~~l 280 (714)
T KOG4629|consen 202 WFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLITEFMWL 280 (714)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHHHHHhh
Confidence 99999999999999999999999999999999999999 9999999999 5554432 378999999 99999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHhhhhHhHhhhhcCCCCChhhhhhcccCCcCCCCCccccccccccccccccccCCCc
Q 005241 259 LKIVLVKVLASSFHVTTFFDRMKESVFHHFILDALSGPPLDETEMEKLPLNGFHASKSLPARLRNRDVIGRTVSKKFGSR 338 (706)
Q Consensus 259 ~ek~lvq~iA~sFH~~~y~dRIqes~~~~~~L~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (706)
+|++++|++|++||+++|++||||++|+||+|++||++|+.|+ .|+... .+.+.+....+ .+..
T Consensus 281 v~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~~e~---------~gr~s~----~~~~~s~~~~r---~~s~ 344 (714)
T KOG4629|consen 281 VKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPREED---------VGREST----FRAIFSPGLSR---SGSA 344 (714)
T ss_pred chhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCccccc---------cccccc----ceeeccccccc---hhhc
Confidence 9999999999999999999999999999999999999999321 222210 01111111111 1223
Q ss_pred ccchHHHHHhhhcccccchhHHHHHHHhhccCcccccccccccc---hhhcccCCHHHHHHHHHHHHhhhccCCcceeeH
Q 005241 339 RIDMERLKRLSLHRRATAWSVKRLVKYVRSSGLSTISKTVDEFE---AAESEINSEWEARTTAQRIFKHVAKHGAKYIEE 415 (706)
Q Consensus 339 ~~~~~~~~k~~~~~~~sa~~~k~l~~~v~~~~~~t~~~~~~~~~---~~~~~i~s~~~A~~lAr~If~~~~~~g~~~I~~ 415 (706)
.++++++|++++ .++|||+|+++++.++..+.++++.+..... ....+|+|+.+|+.+|+.||+++++||..++++
T Consensus 345 ~i~~~~l~~~~~-~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~l 423 (714)
T KOG4629|consen 345 KIGMDKLHKIKK-KNVSAWNMRRLMTILAAGGLTTLSPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDL 423 (714)
T ss_pred ccccchhhhhhH-hhhcHhhhhHHHHHHhccCcccCCccccccccccchhhhhhhhhhHHHHHHHHHhccCCCCccchhh
Confidence 388889999995 6699999999999999999999987765443 344589999999999999999999999999999
Q ss_pred hHHHhhcChHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005241 416 QDLLRFLKREEVHTIFPLFEGALETGRISKSSFRNWVVYAYVERKALAHSLNDTKTAVQQLHKLASAIVSVIIIVVSLLV 495 (706)
Q Consensus 416 edl~~f~~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~eRk~l~~sl~d~~t~v~~L~~ii~~iv~ii~iii~L~i 495 (706)
+|+.+|+++|+|+.+|++|++..+.+ |+++.+++|++++|+||++|+++++|.++++++|++++++++.++++++++..
T Consensus 424 d~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil 502 (714)
T KOG4629|consen 424 DDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLIL 502 (714)
T ss_pred hhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985666 99999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEcCeEEEEEEEeeeEEEEEecCCcEEEEec
Q 005241 496 MGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDMEKIYYPN 575 (706)
Q Consensus 496 lGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Idg~~G~VeeI~LlsT~f~t~Dg~~V~IPN 575 (706)
+|++++++++..+++.++++|+|+++++++++|+||+|+.|||||||||.|||+++.|++|||++|+|.++||+++++||
T Consensus 503 ~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PN 582 (714)
T KOG4629|consen 503 LGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPN 582 (714)
T ss_pred HcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEeecCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCccCCCcEEEEEEEcCCceEEEEEEEEeccC
Q 005241 576 SVLITKPISNFRRSPDMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKYWNPKHTVLFKEIENVDKMKMAVCVSHTMN 655 (706)
Q Consensus 576 s~L~s~~I~N~sRS~~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~~~p~~~v~v~~i~d~~~l~l~i~v~~~~n 655 (706)
++|++++|.|++||+.|.+.++|.++..|+++|++++|++|.+|++++|.+|+|.+.+.+.++++.+.+++.+|+.|+.|
T Consensus 583 S~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n 662 (714)
T KOG4629|consen 583 SVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKIN 662 (714)
T ss_pred HHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCCC
Q 005241 656 HQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQINT 698 (706)
Q Consensus 656 ~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~~ 698 (706)
|||..+++.||.++++++.+.++|+||+|.++|+++++.+.++
T Consensus 663 ~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~~ 705 (714)
T KOG4629|consen 663 FQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLPP 705 (714)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCCC
Confidence 9999999999999999999999999999999999999999883
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=1.1e-36 Score=321.93 Aligned_cols=221 Identities=20% Similarity=0.316 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEc
Q 005241 468 DTKTAVQQLHKLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVID 547 (706)
Q Consensus 468 d~~t~v~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Id 547 (706)
.+.+..+.+.+++++++++++++++|..+|++++++++++|++|+|+|||+|++++|++ ||++|+++|||+|||+|+++
T Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~-sGi~i~~~rpf~vGD~I~i~ 139 (286)
T PRK10334 61 IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLG 139 (286)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEC
Confidence 34568888999999999999999999999999999999999999999999999999977 78999999999999999999
Q ss_pred CeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCcc
Q 005241 548 GVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKYW 627 (706)
Q Consensus 548 g~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~~ 627 (706)
|..|+|++|++++|++++.||+.++|||+.+.++.|+||++.+.++..+.+.++|++|+++ +++.+++.++++|...
T Consensus 140 ~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~---~~~il~~~~~~~~~vl 216 (286)
T PRK10334 140 GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRIL 216 (286)
T ss_pred CEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHH---HHHHHHHHHHhCCcee
Confidence 9999999999999999999999999999999999999999988888999999999999765 5666888899999887
Q ss_pred -CCCcEEEEEEEcCCc-eEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCCCC
Q 005241 628 -NPKHTVLFKEIENVD-KMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQINTS 699 (706)
Q Consensus 628 -~p~~~v~v~~i~d~~-~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~~~ 699 (706)
.|.|.+.+.+++++. .+++++|++. ..++..+++++.+++++|+++||++|+|++++++++.+..
T Consensus 217 ~~p~p~v~~~~~~dssi~~~v~~wv~~-------~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~~~ 283 (286)
T PRK10334 217 KDREMTVRLNELGASSINFVVRVWSNS-------GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKED 283 (286)
T ss_pred cCCCCEEEEEeeeCceEEEEEEEEEec-------chhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCCcc
Confidence 778999999999885 8888889873 1346788999999999999999999999999999876643
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=344.50 Aligned_cols=220 Identities=16% Similarity=0.299 Sum_probs=201.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEc
Q 005241 468 DTKTAVQQLHKLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVID 547 (706)
Q Consensus 468 d~~t~v~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Id 547 (706)
...+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+|||+|++++|++ ||++|+++|||+|||+|+|+
T Consensus 870 l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfI-SGiiIl~eRPfrIGD~I~I~ 948 (1113)
T PRK11281 870 LRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFV-SGLIILFERPVRIGDTVTIG 948 (1113)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEEC
Confidence 34456778899999999999999999999999999999999999999999999999988 78899999999999999999
Q ss_pred CeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCC-ceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCc
Q 005241 548 GVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPD-MGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKY 626 (706)
Q Consensus 548 g~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~-~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~ 626 (706)
|..|+|++|++|+|+++++||+.|+|||+.+.+..|+||++++. .+..+++.|+|++|.+ .+++.+.+.++++|.+
T Consensus 949 ~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~---~v~~iL~eaa~~~p~V 1025 (1113)
T PRK11281 949 TFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLE---KVRELLLQAATENPRV 1025 (1113)
T ss_pred CEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHH---HHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999875 6889999999999975 5666788899999998
Q ss_pred c-CCCcEEEEEEEcCCc-eEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCC
Q 005241 627 W-NPKHTVLFKEIENVD-KMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQIN 697 (706)
Q Consensus 627 ~-~p~~~v~v~~i~d~~-~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~ 697 (706)
. .|+|.|.+.+++++. .+++++|+. +.+.++..+++++.+|+++|+++||++|||+++||+.+.+
T Consensus 1026 l~~P~P~V~~~~fgdssi~~~lr~wv~------~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~ 1092 (1113)
T PRK11281 1026 MKEPEPQVFFLNFGASTLDHELRLYVR------ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQK 1092 (1113)
T ss_pred ccCCCCEEEEEeccCceEEEEEEEEEc------CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCC
Confidence 7 888999999999874 788888986 3456788999999999999999999999999999998654
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=8.1e-34 Score=339.92 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=204.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEE
Q 005241 466 LNDTKTAVQQLHKLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCV 545 (706)
Q Consensus 466 l~d~~t~v~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~ 545 (706)
.+-+.+....+.+++.++++++++++++..+|++.+++.+.+|++|+|+|||+|++++|++ ||++|++++||+|||+|+
T Consensus 865 ~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfi-SGIiIL~erPfrVGD~I~ 943 (1109)
T PRK10929 865 LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFI-SGLIILFEKPIRIGDTVT 943 (1109)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCEEE
Confidence 3456678889999999999999999999999999999999999999999999999999987 789999999999999999
Q ss_pred EcCeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCC-ceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCC
Q 005241 546 IDGVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPD-MGDSVDFTIDVSTSVDAINALKKAIQAYIESKP 624 (706)
Q Consensus 546 Idg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~-~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~ 624 (706)
|+|..|+|++|++|+|+++++||+.|+|||+.+.++.|+||++++. ++..+.+.|+|++|++ .+++.+.+.++++|
T Consensus 944 I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie---~v~~iL~eaa~~~~ 1020 (1109)
T PRK10929 944 IRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSE---EVTEILLTAARRCS 1020 (1109)
T ss_pred ECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHH---HHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999976 6889999999999965 56667888999999
Q ss_pred Ccc-CCCcEEEEEEEcCCc-eEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCCC
Q 005241 625 KYW-NPKHTVLFKEIENVD-KMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQINT 698 (706)
Q Consensus 625 ~~~-~p~~~v~v~~i~d~~-~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~~ 698 (706)
.+. .|.|.|.+.+++++. .+++++|+. +.+.++..+++++..|+++|+++||++|||+++||+++.+.
T Consensus 1021 ~VL~~P~P~V~~~~fgdssi~~elr~wv~------~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~~ 1090 (1109)
T PRK10929 1021 LVLDNPAPEVFLVDLQQGIQIFELRIYAA------EMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGG 1090 (1109)
T ss_pred cccCCCCCEEEEEecCCCceEEEEEEEEc------ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCCC
Confidence 987 789999999999874 678888886 23567889999999999999999999999999999997653
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=1.9e-32 Score=275.95 Aligned_cols=202 Identities=29% Similarity=0.474 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEcCeEEEEEEEe
Q 005241 478 KLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMN 557 (706)
Q Consensus 478 ~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Idg~~G~VeeI~ 557 (706)
+++.++++++++++++..+|++.+++++++|++++++||++|++++|++ ||++++++|||++||||+|+|..|.|++|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhcC
Confidence 5788899999999999999999999999999999999999999999988 567899999999999999999999999999
Q ss_pred eeEEEEEecCCcEEEEecccccCCcEEeecC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCcc-CCCcEEEE
Q 005241 558 ILTTIFLRYDMEKIYYPNSVLITKPISNFRR-SPDMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKYW-NPKHTVLF 635 (706)
Q Consensus 558 LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sR-S~~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~~-~p~~~v~v 635 (706)
+++|+++++||+.++|||+.+.+++|.|++| ++.++..+.+.+++++++++++++.+.+.+.+++++... .+.+.+.+
T Consensus 81 l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (206)
T PF00924_consen 81 LRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVVV 160 (206)
T ss_dssp SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEEE
T ss_pred cceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEEE
Confidence 9999999999999999999999999999999 788999999999999999999999999999999999887 47788888
Q ss_pred EEEcCCc-eEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCcc
Q 005241 636 KEIENVD-KMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKY 684 (706)
Q Consensus 636 ~~i~d~~-~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~ 684 (706)
..+++.. .+.+++++.. +++.+++..|++++.++++.|+++||++
T Consensus 161 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 161 DEIGDSSLEFRIRVYVKN----QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEE-SSSEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccCCceEEEEEEEEEe----CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 8888653 5555556653 4567889999999999999999999974
No 6
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.9e-32 Score=310.60 Aligned_cols=260 Identities=19% Similarity=0.310 Sum_probs=225.9
Q ss_pred cCCcceeeHhHHHhhcChHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH
Q 005241 407 KHGAKYIEEQDLLRFLKREEVHTIFPLFEGALETGRISKSSFRNWVVYAYVERKALAHSLNDTKTAVQQLHKLASAIVSV 486 (706)
Q Consensus 407 ~~g~~~I~~edl~~f~~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~eRk~l~~sl~d~~t~v~~L~~ii~~iv~i 486 (706)
.-|...|++.++.. |.-+| ..+..-...+.+|+......|-.+. ......+.+++.|+++.
T Consensus 550 ~~g~~~isl~~ll~---------avl~~----~~~~~l~r~~~~~L~~~vl~r~~~~------~G~r~~I~t~~~Y~~~~ 610 (835)
T COG3264 550 VLGVESITLGALLQ---------AVLLF----LITYVLTRNLPGWLEVRVLQRLDLD------AGTRYSITTLLGYLLIA 610 (835)
T ss_pred hcceeEeeHHHHHH---------HHHHH----HHHHHHHHHHHHHHHHHHHHhcccC------cchHHHHHHHHHHHHHH
Confidence 45777788877765 33333 2234444456667766666665554 44677799999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEcCeEEEEEEEeeeEEEEEec
Q 005241 487 IIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRY 566 (706)
Q Consensus 487 i~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Idg~~G~VeeI~LlsT~f~t~ 566 (706)
++.++.++.+|++.+++...+|++++|+||++|++++||+ ||+.|+++|||+|||+|++++..|+|.+|+.|+|+++++
T Consensus 611 i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~NFV-SGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~f 689 (835)
T COG3264 611 IGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFV-SGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTF 689 (835)
T ss_pred HHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHHhh-hhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeC
Confidence 9999999999999999999999999999999999999976 888899999999999999999999999999999999999
Q ss_pred CCcEEEEecccccCCcEEeecCCC-CceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCcc-CCCcEEEEEEEcCCc-e
Q 005241 567 DMEKIYYPNSVLITKPISNFRRSP-DMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKYW-NPKHTVLFKEIENVD-K 643 (706)
Q Consensus 567 Dg~~V~IPNs~L~s~~I~N~sRS~-~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~~-~p~~~v~v~~i~d~~-~ 643 (706)
||+.|++||+.+.+..+.||+.++ ..|..+.+.++|++|++ ++++.+.+..+++|++. +|+|.+.+.+++++. .
T Consensus 690 d~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~---~V~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~s~L~ 766 (835)
T COG3264 690 DRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPE---LVRELLLEAAREHPRVLKDPAPEVFFTAFGASSLD 766 (835)
T ss_pred CCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHH---HHHHHHHHHHHhCCCccCCCCCeeEeeccccccee
Confidence 999999999999999999999887 57789999999999987 45667999999999998 899999999999875 8
Q ss_pred EEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEec
Q 005241 644 MKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQ 695 (706)
Q Consensus 644 l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~ 695 (706)
+++++|+.. .+.+...++++...|.+.|+|+||++|||+.+|++++
T Consensus 767 fELr~~v~~------~~~~~~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~~ 812 (835)
T COG3264 767 FELRVYVAE------LGDRMPVRSELNRAILDRFRENGIEIPFPQREVRLKN 812 (835)
T ss_pred EEEEEEeec------cccccchHHHHHHHHHHHHHHcCCCCCCchHheEecC
Confidence 899999973 3445569999999999999999999999999999997
No 7
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.98 E-value=2.1e-30 Score=299.21 Aligned_cols=218 Identities=18% Similarity=0.171 Sum_probs=182.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEc
Q 005241 468 DTKTAVQQLHKLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVID 547 (706)
Q Consensus 468 d~~t~v~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Id 547 (706)
.++++...+.+++.+++++++++++|..+|++++++++++|++|+++||++|++++|++ ||+||++++||+|||+|+++
T Consensus 505 r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i-sGi~Il~e~pf~vGD~I~v~ 583 (741)
T PRK11465 505 RTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII-TGVFIQFENGMNTGDLVTIG 583 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999988 78999999999999999999
Q ss_pred CeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCC--
Q 005241 548 GVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPK-- 625 (706)
Q Consensus 548 g~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~-- 625 (706)
|+.|+||+|++|+|+++++||+.++|||+.+.+ |.|++|. .++..+++.|+|++|.+++.++.+.+.+-+.++|.
T Consensus 584 g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~ 660 (741)
T PRK11465 584 PLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR 660 (741)
T ss_pred CeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999999999999999974 9999986 44678899999999988766653333333444554
Q ss_pred --ccCCCcEEEEEEEcCCceEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCC
Q 005241 626 --YWNPKHTVLFKEIENVDKMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQIN 697 (706)
Q Consensus 626 --~~~p~~~v~v~~i~d~~~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~ 697 (706)
...+...+.+.+++++ .+.+++++.. +.+.+|..+.+++..+++.|+++||++|+|+ +++.+.+
T Consensus 661 ~~il~~p~~vgV~~lgdS-si~lrvr~~t-----~p~~qw~v~rel~~~IK~~Fde~GIeIP~~t--v~v~~~~ 726 (741)
T PRK11465 661 GLIIGEPNFAGIVGLTNT-AFTLRVSFTT-----LPLKQWTVRFALDSQVKKHFDLAGVRAPVQT--YQVLPAP 726 (741)
T ss_pred ccccCCCCeEEEEEecCc-eEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCCCCCCc--eEeecCC
Confidence 2334456788899877 3555555442 2356799999999999999999999987554 4554433
No 8
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2e-28 Score=261.22 Aligned_cols=213 Identities=22% Similarity=0.364 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEc-CeEEE
Q 005241 474 QQLHKLASAIVSVIIIVVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVID-GVQMI 552 (706)
Q Consensus 474 ~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Id-g~~G~ 552 (706)
..+.+++.++++++++++++..+|++++++++++|.+|+++||++|++++|++ +|+++.++|||++||+|+++ +..|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~-~Gi~il~~~~f~vGD~I~i~~~~~G~ 163 (316)
T COG0668 85 VFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPFKVGDWIEIGSGVEGT 163 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHhheecCcCcCCEEEECCCceEE
Confidence 37899999999999999999999999999999999999999999999999988 67888899999999999999 79999
Q ss_pred EEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHhCCCcc--CCC
Q 005241 553 VEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTIDVSTSVDAINALKKAIQAYIESKPKYW--NPK 630 (706)
Q Consensus 553 VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~~~~~i~~~V~~~T~~ekI~~Lk~~i~~~l~~~~~~~--~p~ 630 (706)
|++|++++|+++++||+.+++|||.+.+..|.|+++.+.++..+.+.++|++++++.+.+ +++.++..+.+. .|.
T Consensus 164 V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~ 240 (316)
T COG0668 164 VEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKIEPE 240 (316)
T ss_pred EEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhcccccccCCC
Confidence 999999999999999999999999999999999999988888999999999998765554 666666665554 688
Q ss_pred cEEEEEEEcCCc-eEEEEEEEEeccCCcccccHHHHHHHHHHHHHHHHHHCCCccccCceEEEEecCC
Q 005241 631 HTVLFKEIENVD-KMKMAVCVSHTMNHQNYGEKSSRRSELVFELKKIFENLGIKYHLLPQEVHLTQIN 697 (706)
Q Consensus 631 ~~v~v~~i~d~~-~l~l~i~v~~~~n~qn~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~ 697 (706)
|.+.+.++++.. .+.+++|... ...+..++++...++++++++||++|+|++.++..+.+
T Consensus 241 ~~v~~~~~~~~~~~i~v~~~t~~-------~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~~ 301 (316)
T COG0668 241 PVIGVSELGDSGINIRVRFWTNP-------EDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGELE 301 (316)
T ss_pred cEEEEeeccCCceEEEEEEEecc-------hhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCCC
Confidence 999999999774 4444555542 23788999999999999999999999999999955443
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=89.26 E-value=0.65 Score=46.99 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhccCCcceeeHhHHHhhc----C---hHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHhhh
Q 005241 392 WEARTTAQRIFKHVAKHGAKYIEEQDLLRFL----K---REEVHTIFPLFEGALETGRISKSSFRNWVVYAYVERKALAH 464 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~~g~~~I~~edl~~f~----~---~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~eRk~l~~ 464 (706)
.++...|+++|..+...+..+|..+++..-+ + ++.+.-+|.++|.+ ++|.|++.+|...+..+|.--.....
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~~~ 138 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSKAL 138 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccccC
Confidence 4677899999999999999999999965533 1 45688899999977 99999999999999988864433222
Q ss_pred hcCChhHHHHHHHHH
Q 005241 465 SLNDTKTAVQQLHKL 479 (706)
Q Consensus 465 sl~d~~t~v~~L~~i 479 (706)
. .+..+.......+
T Consensus 139 ~-~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 139 P-EDEETPEERVDKI 152 (193)
T ss_pred C-cccccHHHHHHHH
Confidence 2 3344444444444
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=89.09 E-value=0.68 Score=45.45 Aligned_cols=57 Identities=21% Similarity=0.445 Sum_probs=48.7
Q ss_pred HHHHHHHhhhccCCcceeeHhHHHhhcC--------hHHHHhHHHhhhhhhhcccchHHHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKYIEEQDLLRFLK--------REEVHTIFPLFEGALETGRISKSSFRNWVVY 454 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~I~~edl~~f~~--------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~ 454 (706)
+.+.+++..+-. |..+|.+.+|..++. .|+...||.+||.+ .+|.|+..+|+.++..
T Consensus 56 ~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 56 AEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHh
Confidence 567888888866 889999999988772 57899999999977 9999999999988873
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.63 E-value=1.1 Score=36.07 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=45.2
Q ss_pred HHHHhhhccCCcceeeHhHHHhhc-----ChHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFL-----KREEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~-----~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
+.+|..+...+...|+.+++..++ +.+++...|..+|.. .+|.|+.+++...+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHH
Confidence 457788877788889999988876 467789999999966 88999999887776554
No 12
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=87.75 E-value=0.62 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHhHHHhhhhhhhcccchHHHHHHHHHH
Q 005241 426 EVHTIFPLFEGALETGRISKSSFRNWVVY 454 (706)
Q Consensus 426 ~a~~af~lfd~~~~~g~Is~~~l~~~v~~ 454 (706)
|++++|..||.+ ++|.|+.+||...+.+
T Consensus 1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKD-GDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCCHHHHHHHHHh
Confidence 467899999987 9999999999877643
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.21 E-value=2.6 Score=37.30 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhcc-CCcceeeHhHHHhhcC--------h-HHHHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 392 WEARTTAQRIFKHVAK-HGAKYIEEQDLLRFLK--------R-EEVHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~-~g~~~I~~edl~~f~~--------~-e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
..|...-+.+|+.+.+ .|..+|+.++|...+. . +++++.+.-+|.+ ++|.|+.++|...+...-.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 3566778889999988 8999999999877653 3 6788889899976 9999999999877765543
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=86.97 E-value=1.6 Score=35.31 Aligned_cols=53 Identities=38% Similarity=0.616 Sum_probs=43.0
Q ss_pred HHHHhhhccCCcceeeHhHHHhhcC-------h----HHHHhHHHhhhhhhhcccchHHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFLK-------R----EEVHTIFPLFEGALETGRISKSSFRNWV 452 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~~-------~----e~a~~af~lfd~~~~~g~Is~~~l~~~v 452 (706)
+++|..+-..+..+|+.++|..++. + +.+..+|..+|.+ .+|.|+.++|...+
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhccC
Confidence 5788889888999999999888652 2 2456669999977 99999999987753
No 15
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=86.65 E-value=2.8 Score=37.11 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhccCCcceeeHhHHHhhc-----ChHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 395 RTTAQRIFKHVAKHGAKYIEEQDLLRFL-----KREEVHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 395 ~~lAr~If~~~~~~g~~~I~~edl~~f~-----~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
..-.+.+|..+...+..+|+.+++..+| ++++++.+|..+|.. .+|.|+.++|...+..+++
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHH
Confidence 3456788988888888999999998876 467899999999966 8999999999887766544
No 16
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=86.44 E-value=2.4 Score=37.59 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcc-CCcc-eeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 392 WEARTTAQRIFKHVAK-HGAK-YIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~-~g~~-~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
..|..-++++|+.+.. .|.. +|+.++|...+. ++++++++.-+|.+ .+|.|+.++|...+...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHH
Confidence 4577888999999984 5665 699999988772 23689999999976 99999999988776554
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=83.73 E-value=3.2 Score=36.66 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhh-hccCCcc-eeeHhHHHhhcCh------------HHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 393 EARTTAQRIFKH-VAKHGAK-YIEEQDLLRFLKR------------EEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 393 ~A~~lAr~If~~-~~~~g~~-~I~~edl~~f~~~------------e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
.|...-..+|+. +.+.|.. +|+.++|..++.. +++++.+.-+|.+ .+|.|+.++|..++..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 455556788888 5455754 9999999988743 4688999999966 99999999998888765
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=82.87 E-value=2.7 Score=36.99 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhcc-CC-cceeeHhHHHhhc----------ChHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 393 EARTTAQRIFKHVAK-HG-AKYIEEQDLLRFL----------KREEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 393 ~A~~lAr~If~~~~~-~g-~~~I~~edl~~f~----------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
+|...-=.+|+.++. .| ..+|+.++|..++ +++++++.|.-+|.+ .+|.|+.++|...+.+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHH
Confidence 344444568888876 56 6799999988766 356799999999976 99999999998777654
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=82.78 E-value=4 Score=35.30 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhcc--CCcceeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 393 EARTTAQRIFKHVAK--HGAKYIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 393 ~A~~lAr~If~~~~~--~g~~~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
+...-.+.+|..+.+ .+..+|+.+++..++. .++++.++..||.. .+|.|+.++|...+...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHH
Confidence 445557888999977 6888999999887652 46789999999966 88999999998887665
No 20
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.77 E-value=4.2 Score=35.68 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhc-cCCcc-eeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 393 EARTTAQRIFKHVA-KHGAK-YIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 393 ~A~~lAr~If~~~~-~~g~~-~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
.|..-.+.+|..+. +.|.. .|+.+++...+. +++++.+|..+|.+ .+|.|+.++|...+...
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHH
Confidence 45666788999996 77888 499999877653 35689999999976 89999999987766544
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.61 E-value=3.7 Score=39.43 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=47.2
Q ss_pred HHHHHhhhccCCcceeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 398 AQRIFKHVAKHGAKYIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 398 Ar~If~~~~~~g~~~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
.+.++..+...|...|..++|...+. .++..+||.+||.+ ++|.|+..+|+..+.+...
T Consensus 46 l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 46 LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCC
Confidence 45566666667888899999888663 23789999999987 9999999999999887643
No 22
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=80.17 E-value=4.8 Score=35.22 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhccCC--cceeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 392 WEARTTAQRIFKHVAKHG--AKYIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~~g--~~~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
.+|..-.-.+|+..+... ..+|+.++|..+|. ++++...|..+|.+ .+|.|+.++|...+...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 346666778898887653 57899999887763 56799999999966 89999999988776654
No 23
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=77.34 E-value=7.4 Score=34.25 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhcc-CC-cceeeHhHHHhhc------------ChHHHHhHHHhhhhhhhcccchHHHHHHHHHH
Q 005241 392 WEARTTAQRIFKHVAK-HG-AKYIEEQDLLRFL------------KREEVHTIFPLFEGALETGRISKSSFRNWVVY 454 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~-~g-~~~I~~edl~~f~------------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~ 454 (706)
..|...-+.+|..+.. .| ..+|+.+++...+ +.++++..+..+|.+ .+|.|+.++|...+..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 3455667778888876 65 5899999988654 235688999999976 8999999998766543
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=75.33 E-value=4.6 Score=45.36 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCcceeeHhHHHhhcChHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 387 EINSEWEARTTAQRIFKHVAKHGAKYIEEQDLLRFLKREEVHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 387 ~i~s~~~A~~lAr~If~~~~~~g~~~I~~edl~~f~~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
.+++-...+...+.+|..+...|..+|+.+++.. ++..|..||.+ ++|.|+.++|...+...|+
T Consensus 325 ~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 325 RLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 3566677888899999999999999999999853 67899999976 9999999999999888765
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=74.46 E-value=8.1 Score=30.03 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=33.3
Q ss_pred ceeeHhHHHhh--------cChHHHHhHHHhhhhhhhcccchHHHHHHHHHH
Q 005241 411 KYIEEQDLLRF--------LKREEVHTIFPLFEGALETGRISKSSFRNWVVY 454 (706)
Q Consensus 411 ~~I~~edl~~f--------~~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~ 454 (706)
..|+.++|..+ ++++++..+|..+|.+ .+|.|+.++|...+.+
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHHh
Confidence 35677776653 3467899999999976 9999999998876643
No 26
>PTZ00183 centrin; Provisional
Probab=73.47 E-value=7.4 Score=36.68 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHHHHHhhhccCCcceeeHhHHHhhc-------ChHHHHhHHHhhhhhhhcccchHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKYIEEQDLLRFL-------KREEVHTIFPLFEGALETGRISKSSFRNWV 452 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~I~~edl~~f~-------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v 452 (706)
...+.+|..+...+..+|+.+++..++ .++++..+|..||.+ ..|.|+.++|...+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHH
Confidence 345788988888888899999988764 467789999999866 88999998876655
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=73.24 E-value=6.2 Score=38.70 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=45.3
Q ss_pred HHHHhhhccCCcceeeHhHHHhhc--------ChHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFL--------KREEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~--------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
.++..-+.+.|+..|+.+||.+.+ +.+++..+|.+||-+ .+|.|+..+|+....+.
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHHHHHh
Confidence 345555667888999999999875 367899999999955 99999999888777654
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=71.49 E-value=7.9 Score=29.37 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=38.5
Q ss_pred HHHHhhhccCCcceeeHhHHHhhc-------ChHHHHhHHHhhhhhhhcccchHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFL-------KREEVHTIFPLFEGALETGRISKSSFRNW 451 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~-------~~e~a~~af~lfd~~~~~g~Is~~~l~~~ 451 (706)
+.+|..+...+...|+.+++...+ ..+++..+|..++.. .+|.|+.++|...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHH
Confidence 456777755666788888877655 245678899999865 8899999887654
No 29
>PTZ00184 calmodulin; Provisional
Probab=70.49 E-value=10 Score=35.09 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=43.5
Q ss_pred HHHHHHHhhhccCCcceeeHhHHHhhc-------ChHHHHhHHHhhhhhhhcccchHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKYIEEQDLLRFL-------KREEVHTIFPLFEGALETGRISKSSFRNWV 452 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~I~~edl~~f~-------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v 452 (706)
..++.+|..+...|..+|+.+++..++ +.+++..+|..+|.. ..|.|+.++|...+
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHH
Confidence 345778888877888889999987764 456788888888866 88899988876544
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=69.94 E-value=7.6 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHHHHHHhhhccCCcce-eeHhHHHhhcC--------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKY-IEEQDLLRFLK--------REEVHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~-I~~edl~~f~~--------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
-++.+|+..+...+... |..+++.+.+. .+..+-||.++|.. .+|.|+++++...+.....
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMVG 135 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHc
Confidence 56889999886666655 99999888652 23688899999976 9999999999988877654
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=69.87 E-value=14 Score=32.38 Aligned_cols=62 Identities=16% Similarity=0.362 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhc-cCCcc-eeeHhHHHhhcC------------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 393 EARTTAQRIFKHVA-KHGAK-YIEEQDLLRFLK------------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 393 ~A~~lAr~If~~~~-~~g~~-~I~~edl~~f~~------------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
.|..--+.+|+.+. +.|.. +|..++|...|. ++++++.+.-+|++ .+|.|+.++|...+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHH
Confidence 45666788899986 57887 699999766553 35688999999977 89999999987776554
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=68.35 E-value=9.4 Score=45.53 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHHhhhccCCcceeeHhHHHhhc-------ChHHHHhHHHhhhhhhhcccchHHHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKYIEEQDLLRFL-------KREEVHTIFPLFEGALETGRISKSSFRNWVVY 454 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~I~~edl~~f~-------~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~ 454 (706)
..++++|..+...+...|..++|..++ ++++...+|..||.+ .+|.|+.++|+..+..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 458888988888888999999988655 356799999999987 9999999999887766
No 33
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=67.99 E-value=5.9 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHhHHHhhhhhhhcccchHHHHHHHHH
Q 005241 427 VHTIFPLFEGALETGRISKSSFRNWVV 453 (706)
Q Consensus 427 a~~af~lfd~~~~~g~Is~~~l~~~v~ 453 (706)
...+|..+|.+ .+|.|+.++|...+.
T Consensus 2 l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 45789999977 999999999888775
No 34
>PTZ00184 calmodulin; Provisional
Probab=64.54 E-value=12 Score=34.52 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=46.2
Q ss_pred HHHHHHhhhccCCcceeeHhHHHhhcC--------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 397 TAQRIFKHVAKHGAKYIEEQDLLRFLK--------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 397 lAr~If~~~~~~g~~~I~~edl~~f~~--------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
..+++|..+...+...|..+++..++. .+.+..+|..+|.+ ++|.|+.+++...+...
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHHH
Confidence 467888888777778899999887542 24688999999976 89999999998887553
No 35
>PRK11281 hypothetical protein; Provisional
Probab=62.67 E-value=18 Score=46.03 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=43.7
Q ss_pred cccccccccchhh-------------HHHHHHHHHHHHhhhhhhhhhhhheehheehhhhhcceeEEEEecccccchhhH
Q 005241 151 LRSLQDKLQWGLE-------------LWKWCLMILVLFCGRLVSGWVVGFLVFLIERNFMLREKVLYFVYGLRKSFQNCA 217 (706)
Q Consensus 151 i~~~~~~~~w~~~-------------lw~W~~~~~v~~~grlvs~w~v~~~v~~ie~nfll~k~vLyfv~gl~k~v~~~i 217 (706)
++.+.+.++|+.. +++-...+++++.|++++.++.+++-.++.....+.....| .+.+-+...+
T Consensus 810 ~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~~---~i~~li~y~I 886 (1113)
T PRK11281 810 FSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTSY---AITTLLTYII 886 (1113)
T ss_pred HHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHH---HHHHHHHHHH
Confidence 5667788888743 56666666666666666655554433222222222222223 3556677778
Q ss_pred HHHHHHHHHHhh
Q 005241 218 WLGFALVSWMIL 229 (706)
Q Consensus 218 W~~~vl~~w~~l 229 (706)
|+..+++++..+
T Consensus 887 ~~i~iliaL~~l 898 (1113)
T PRK11281 887 IAVGAVTAFSTL 898 (1113)
T ss_pred HHHHHHHHHHHc
Confidence 888888777654
No 36
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=61.01 E-value=8.3 Score=25.75 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.3
Q ss_pred HhHHHhhhhhhhcccchHHHHHHH
Q 005241 428 HTIFPLFEGALETGRISKSSFRNW 451 (706)
Q Consensus 428 ~~af~lfd~~~~~g~Is~~~l~~~ 451 (706)
+++|..+|.+ .+|.|+.+|+...
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHH
Confidence 4589999976 9999999998764
No 37
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=59.80 E-value=14 Score=24.67 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.8
Q ss_pred CccCCcEEEE-----cCeEEEEEEEe
Q 005241 537 PFDVGDRCVI-----DGVQMIVEEMN 557 (706)
Q Consensus 537 PFdVGDrV~I-----dg~~G~VeeI~ 557 (706)
+|.+||.|.| .|..|.|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5789999999 34788888874
No 38
>PTZ00183 centrin; Provisional
Probab=58.49 E-value=26 Score=32.85 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=45.7
Q ss_pred HHHHHHhhhccCCcceeeHhHHHhhcC--------hHHHHhHHHhhhhhhhcccchHHHHHHHHHHH
Q 005241 397 TAQRIFKHVAKHGAKYIEEQDLLRFLK--------REEVHTIFPLFEGALETGRISKSSFRNWVVYA 455 (706)
Q Consensus 397 lAr~If~~~~~~g~~~I~~edl~~f~~--------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~i 455 (706)
....+|..+...+...|..+++...+. .++.+.+|..+|.+ ++|.|+..++..++...
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHh
Confidence 366778777777778899999876542 34688999999976 99999999999888654
No 39
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=56.21 E-value=28 Score=29.75 Aligned_cols=54 Identities=20% Similarity=0.545 Sum_probs=39.1
Q ss_pred HHHHhhhccCCcceeeHhHHHhhcC---------hHHHHhHHHhhhhhh---hcccchHHHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFLK---------REEVHTIFPLFEGAL---ETGRISKSSFRNWVV 453 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~~---------~e~a~~af~lfd~~~---~~g~Is~~~l~~~v~ 453 (706)
+.||.+.+. +..+++.++|..|+. .+++...+.-|.... ..+.++.+.|.+++.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 578999977 889999999999994 234666666665442 357788877777663
No 40
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=54.41 E-value=29 Score=31.83 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.0
Q ss_pred CccCCcEEE-EcCeEEEEEEEeeeEEEEEecCCcEEEE
Q 005241 537 PFDVGDRCV-IDGVQMIVEEMNILTTIFLRYDMEKIYY 573 (706)
Q Consensus 537 PFdVGDrV~-Idg~~G~VeeI~LlsT~f~t~Dg~~V~I 573 (706)
-.++||+|. ++|..|+|.+|+=-+.++...+|..+.+
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~ 89 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKI 89 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 458999995 5889999999987555566667765554
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=53.39 E-value=34 Score=31.81 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhccCCcceeeHhHHHhhc-C--hHHHHhHHHhhhhhhhcccchHHHHHHHH
Q 005241 392 WEARTTAQRIFKHVAKHGAKYIEEQDLLRFL-K--REEVHTIFPLFEGALETGRISKSSFRNWV 452 (706)
Q Consensus 392 ~~A~~lAr~If~~~~~~g~~~I~~edl~~f~-~--~e~a~~af~lfd~~~~~g~Is~~~l~~~v 452 (706)
..-+.-+...|..+...+..+|+.++|..+. . +..+...|..+|.+ .+|.||.+++...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 3455667888999988899999999999863 2 24578899999965 99999999987766
No 42
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=50.13 E-value=28 Score=34.29 Aligned_cols=54 Identities=28% Similarity=0.457 Sum_probs=43.4
Q ss_pred HHHHhhhccCCcceeeHhHHHhhcC-------hHHHHhHHHhhhhhhhcccchHHHHHHHHH
Q 005241 399 QRIFKHVAKHGAKYIEEQDLLRFLK-------REEVHTIFPLFEGALETGRISKSSFRNWVV 453 (706)
Q Consensus 399 r~If~~~~~~g~~~I~~edl~~f~~-------~e~a~~af~lfd~~~~~g~Is~~~l~~~v~ 453 (706)
+..|+-+.+.+..+|...++.++++ ++++++.+..+|.+ ++|.|+.++|+..+.
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~~ 155 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHHh
Confidence 3344445577889999999999873 67899999999977 999999999887653
No 43
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=49.96 E-value=55 Score=29.86 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=45.9
Q ss_pred HHHHHHhhhccCCcceeeHhHHHhhc-----ChHHHHhHHHhhhhhhhcccchHHHHHHHHHHHH
Q 005241 397 TAQRIFKHVAKHGAKYIEEQDLLRFL-----KREEVHTIFPLFEGALETGRISKSSFRNWVVYAY 456 (706)
Q Consensus 397 lAr~If~~~~~~g~~~I~~edl~~f~-----~~e~a~~af~lfd~~~~~g~Is~~~l~~~v~~iy 456 (706)
--+.+|..+ .++..+|+-++...|| +.+....++.+-|.+ .+|.++.+||.-++-=++
T Consensus 11 ~y~~~F~~l-~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 11 KYDQIFQSL-DPQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHCT-SSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHH
Confidence 356789888 4678899999999887 467899999999976 999999999877665443
No 44
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=49.45 E-value=49 Score=26.98 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=17.3
Q ss_pred ccCCcEEEE-cCeEEEEEEEe
Q 005241 538 FDVGDRCVI-DGVQMIVEEMN 557 (706)
Q Consensus 538 FdVGDrV~I-dg~~G~VeeI~ 557 (706)
-+|||.|++ +|.+|.|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 479999999 67999999876
No 45
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=47.38 E-value=56 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=27.1
Q ss_pred CccCCcEEEE-cCeEEEEEEEeeeEEEEEecCCcEEEE
Q 005241 537 PFDVGDRCVI-DGVQMIVEEMNILTTIFLRYDMEKIYY 573 (706)
Q Consensus 537 PFdVGDrV~I-dg~~G~VeeI~LlsT~f~t~Dg~~V~I 573 (706)
-..+||+|.. +|..|+|.+++=-+.++...+|..+.+
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 4589999987 779999999986555555555655443
No 46
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=44.46 E-value=30 Score=28.14 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCccCCcEEEEc---CeEEEEEEEeeeEEEEE
Q 005241 536 HPFDVGDRCVID---GVQMIVEEMNILTTIFL 564 (706)
Q Consensus 536 ~PFdVGDrV~Id---g~~G~VeeI~LlsT~f~ 564 (706)
.+.-|||||.++ +..+.|+++--+.|.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 346899999874 45678888888877764
No 47
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=44.37 E-value=32 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHhHHHhhhhhhhcccchHHHHHHHHHHHHH
Q 005241 427 VHTIFPLFEGALETGRISKSSFRNWVVYAYV 457 (706)
Q Consensus 427 a~~af~lfd~~~~~g~Is~~~l~~~v~~iy~ 457 (706)
..++|..||.+ .+|.|+.+++..++.....
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhcc
Confidence 35799999977 9999999999999987653
No 48
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=43.22 E-value=14 Score=29.67 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=10.1
Q ss_pred cCCccCCcEEEEcCeEEEE
Q 005241 535 MHPFDVGDRCVIDGVQMIV 553 (706)
Q Consensus 535 ~~PFdVGDrV~Idg~~G~V 553 (706)
..||+.||||++-+..|.-
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~ 21 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRK 21 (54)
T ss_dssp --S--TT-EEEEEETT--E
T ss_pred cCCCCCCCEEEEccCCCCe
Confidence 4699999999997766653
No 49
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=43.08 E-value=46 Score=29.45 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=38.8
Q ss_pred hhHHHHHhhhccchHHHHHHHHHHHHHHHHhhheecccccccccc-hhhH-HHHHHHHHHHHhhhhhhhhhhhhe
Q 005241 116 QAKYRKRKERKINKRALIEWTLFLIIMTCLVCSLTLRSLQDKLQW-GLEL-WKWCLMILVLFCGRLVSGWVVGFL 188 (706)
Q Consensus 116 ~~~~~k~~~~~~~~~~~~~w~~~~~~~~~li~sl~i~~~~~~~~w-~~~l-w~W~~~~~v~~~grlvs~w~v~~~ 188 (706)
.|+|++=.+++.+....+-.+.+++-.+.++.+..-|.+-+..+. | .+ |-|.+.+.+.+.+..+++|-++..
T Consensus 4 ~p~f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G-~~t~g~~~g~~~~~~~~~l~~~Yv~~A 77 (91)
T PF04341_consen 4 SPEFQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPG-SLTLGIVLGLGQIVFAWVLTWLYVRRA 77 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCC-CcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665443333332222333334444445556667788888888 7 33 555555555566666666555543
No 50
>COG5346 Predicted membrane protein [Function unknown]
Probab=42.83 E-value=1.9e+02 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhh
Q 005241 506 VVTSQLLLVGFMFQ 519 (706)
Q Consensus 506 ~~gs~~laigfafq 519 (706)
+..+..+|++|.++
T Consensus 115 ~Gtv~alAlaFv~~ 128 (136)
T COG5346 115 GGTVFALALAFVIG 128 (136)
T ss_pred cchHHHHHHHHHHh
Confidence 33344455555554
No 51
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=42.35 E-value=49 Score=30.58 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHhhhhhhhhhhhhe
Q 005241 128 NKRALIEWTLFLIIMTCLVCSLTLRSLQDKLQWGLELWKWCLMILVLFCGRLVSGWVVGFL 188 (706)
Q Consensus 128 ~~~~~~~w~~~~~~~~~li~sl~i~~~~~~~~w~~~lw~W~~~~~v~~~grlvs~w~v~~~ 188 (706)
+...+-||....-.+.+-++++. =|.+++.+|.+.+..++||-+|.+|.+.+.
T Consensus 18 ~~i~lYE~~iilG~~~gn~~~~~--------~~~~~~~~~~~~i~GL~~GiFvG~la~ALa 70 (110)
T PF13782_consen 18 RHIRLYEWAIILGAILGNIFSLF--------EISIPLGPILLIIFGLFAGIFVGCLAAALA 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------cccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899988777777777776 456667889999999999999999987664
No 52
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=41.02 E-value=41 Score=32.15 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=44.0
Q ss_pred HHHHHHHhhhccCCcceeeHhHHHhhcC-------hHHHHhHHHhhhhhhhcccchHHHHHHHH
Q 005241 396 TTAQRIFKHVAKHGAKYIEEQDLLRFLK-------REEVHTIFPLFEGALETGRISKSSFRNWV 452 (706)
Q Consensus 396 ~lAr~If~~~~~~g~~~I~~edl~~f~~-------~e~a~~af~lfd~~~~~g~Is~~~l~~~v 452 (706)
.-.+.+|+-+...|..+|+.++|..++. .++.+..+.-+|.+ ++|.|..++|...+
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d-~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD-GDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC-CCCeEeHHHHHHHH
Confidence 3456777777788999999999999873 56788889889866 99999877665543
No 53
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=40.56 E-value=1e+02 Score=27.92 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=27.6
Q ss_pred ccCCcEEEE-cCeEEEEEEEeeeEEEEEecCCcEEEEe
Q 005241 538 FDVGDRCVI-DGVQMIVEEMNILTTIFLRYDMEKIYYP 574 (706)
Q Consensus 538 FdVGDrV~I-dg~~G~VeeI~LlsT~f~t~Dg~~V~IP 574 (706)
...||.|.. +|..|+|.+|+=-+-++.-.+|..+.+-
T Consensus 44 L~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 44 LKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFE 81 (97)
T ss_pred ccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEE
Confidence 479999976 6799999999876655555566666553
No 54
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.18 E-value=44 Score=42.55 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred ccccccccch-------------hhHHHHHHHHHHHHhhhhhhhhhhhheehheehhhhhcceeEEEEecccccchhhHH
Q 005241 152 RSLQDKLQWG-------------LELWKWCLMILVLFCGRLVSGWVVGFLVFLIERNFMLREKVLYFVYGLRKSFQNCAW 218 (706)
Q Consensus 152 ~~~~~~~~w~-------------~~lw~W~~~~~v~~~grlvs~w~v~~~v~~ie~nfll~k~vLyfv~gl~k~v~~~iW 218 (706)
..+.+.++|. +.++.-.+.+++++.|+.++.|+-+++-..+.+...+....-|| +.+-++.++|
T Consensus 808 s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~I~ 884 (1109)
T PRK10929 808 GFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYLLM 884 (1109)
T ss_pred HHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHHHH
Confidence 4678899996 45677777777777777777666665533322211111122233 3444566677
Q ss_pred HHHHHHHHHhh
Q 005241 219 LGFALVSWMIL 229 (706)
Q Consensus 219 ~~~vl~~w~~l 229 (706)
++.+++++..+
T Consensus 885 ~ig~l~~L~~l 895 (1109)
T PRK10929 885 LIGGLVGFSMI 895 (1109)
T ss_pred HHHHHHHHHHc
Confidence 77777666554
No 55
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=39.49 E-value=88 Score=31.22 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.8
Q ss_pred HhccchhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005241 495 VMGLATTKVVFVVTSQLLLVGFMFQNTCKTTF 526 (706)
Q Consensus 495 ilGv~~~~lla~~gs~~laigfafq~tl~n~~ 526 (706)
++|+++--++..++.+..++||.+|.++.|.+
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 56888887888888888999999999988844
No 56
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=39.29 E-value=28 Score=27.93 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=17.7
Q ss_pred ccCCcEEEE--cCeEEEEEEEe
Q 005241 538 FDVGDRCVI--DGVQMIVEEMN 557 (706)
Q Consensus 538 FdVGDrV~I--dg~~G~VeeI~ 557 (706)
|.+||.|+. +|-.++|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999998 78999999874
No 57
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=38.84 E-value=30 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=19.1
Q ss_pred HHhHHHhhhhhhhcccchHHHHHHHHH
Q 005241 427 VHTIFPLFEGALETGRISKSSFRNWVV 453 (706)
Q Consensus 427 a~~af~lfd~~~~~g~Is~~~l~~~v~ 453 (706)
...+|..+|.. .+|.|+..++..++.
T Consensus 2 ~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 35678888865 788898888776654
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.12 E-value=1.4e+02 Score=29.52 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHHHhhhhHHHHHhHHhhhhhcCC
Q 005241 470 KTAVQQLHKLASAIVSVIIIVVSLLVMGLATTKVVFV-VTSQLLLVGFMFQNTCKTTFESIIFVFVMHP 537 (706)
Q Consensus 470 ~t~v~~L~~ii~~iv~ii~iii~L~ilGv~~~~lla~-~gs~~laigfafq~tl~n~~~sgIfIfv~~P 537 (706)
...+-.+-.++-.++.+++.++.|..++.+.+.++.+ +|.+++|+|.++ |.+|+..+..++
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL-------~~~g~~~~~~~~ 64 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVL-------LSLGLLCLLSKR 64 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcc
No 59
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=35.82 E-value=80 Score=27.21 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.7
Q ss_pred CccCCcEEEE-----cCeEEEEEEEee
Q 005241 537 PFDVGDRCVI-----DGVQMIVEEMNI 558 (706)
Q Consensus 537 PFdVGDrV~I-----dg~~G~VeeI~L 558 (706)
+++.||+|.| -|.+|.|.+|..
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~ 32 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLP 32 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999998 368899999864
No 60
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=35.48 E-value=1e+02 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=26.8
Q ss_pred CccCCcEEEE-cCeEEEEEEEeeeEEEEEecCCcEEEE
Q 005241 537 PFDVGDRCVI-DGVQMIVEEMNILTTIFLRYDMEKIYY 573 (706)
Q Consensus 537 PFdVGDrV~I-dg~~G~VeeI~LlsT~f~t~Dg~~V~I 573 (706)
-.++||+|.. +|..|+|.+|+=-+.++...+|..+.+
T Consensus 38 ~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 38 SLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3589999976 789999999986555555555655544
No 61
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=34.92 E-value=2.3e+02 Score=27.04 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=34.7
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhhcCCccCCcEEEEcCeEEEEEEEee
Q 005241 490 VVSLLVMGLATTKVVFVVTSQLLLVGFMFQNTCKTTFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMNI 558 (706)
Q Consensus 490 ii~L~ilGv~~~~lla~~gs~~laigfafq~tl~n~~~sgIfIfv~~PFdVGDrV~Idg~~G~VeeI~L 558 (706)
++.+..+......++.++|.-.++++++|.-... --+..+.|.+++....|.+.+-
T Consensus 25 ~~a~~f~~~GaW~Vl~F~glev~~l~~a~~~~~r-------------~~~~~E~I~l~~~~~~~~~~~~ 80 (140)
T PF10003_consen 25 IIAIAFLLMGAWPVLPFAGLEVLALWYAFRRNYR-------------HARDYERITLSPDDLLVVRVDP 80 (140)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------------hCcCcEEEEEeCCeeEEEEEcC
Confidence 3333333334466677777777777766655443 3456788999887777777653
No 62
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=33.63 E-value=67 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCcEEEE-----cCeEEEEEEEee
Q 005241 540 VGDRCVI-----DGVQMIVEEMNI 558 (706)
Q Consensus 540 VGDrV~I-----dg~~G~VeeI~L 558 (706)
+||+|.| .|..|.|.+|.-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 6999999 569999999863
No 63
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=46 Score=36.72 Aligned_cols=115 Identities=22% Similarity=0.352 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHH---HHHHhhhhhh---------hhhhhheehheehhhhhcc----ee-EEEE---------ecccc
Q 005241 158 LQWGLELWKWCLMI---LVLFCGRLVS---------GWVVGFLVFLIERNFMLRE----KV-LYFV---------YGLRK 211 (706)
Q Consensus 158 ~~w~~~lw~W~~~~---~v~~~grlvs---------~w~v~~~v~~ie~nfll~k----~v-Lyfv---------~gl~k 211 (706)
.+|.+.+|+..+++ +..||+|.+| |-+++++.+++--.|+.+| +. .|-+ |-++.
T Consensus 131 ~i~r~d~krflvfv~gi~Lff~ar~Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt~~~~iliGgWs~slY~i~q 210 (452)
T KOG3817|consen 131 NIIRLDLKRFLVFVVGILLFFSARRLSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKTMMYGILIGGWSISLYVIKQ 210 (452)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHhccCceEEEecccHHHHHHHHHHHHHHHHHhcccccceEEEEEccchhHHHHHHH
Confidence 38899999977665 5568898887 6677777776666666544 22 2211 11222
Q ss_pred cchhh--HH-----------HHHHHHHHHhhc-cCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc
Q 005241 212 SFQNC--AW-----------LGFALVSWMILF-PNV---HKHNPVLKKIFRALVAVLIGATIWLLKIV---LVKVLASSF 271 (706)
Q Consensus 212 ~v~~~--iW-----------~~~vl~~w~~lf-~~v---~~~~~~l~~v~kvL~~~lv~a~l~l~ek~---lvq~iA~sF 271 (706)
...|. || +..-+++|..-. +++ .|+...+.++.+.+..+|+-+-++..+.. +|++|.+.+
T Consensus 211 l~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~~~ 290 (452)
T KOG3817|consen 211 LADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCFVA 290 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22222 22 112223333323 333 23445888899999999998888776654 577777665
Q ss_pred c
Q 005241 272 H 272 (706)
Q Consensus 272 H 272 (706)
|
T Consensus 291 l 291 (452)
T KOG3817|consen 291 L 291 (452)
T ss_pred H
Confidence 5
No 64
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.18 E-value=37 Score=28.42 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHhhhhHHHHHhHHhhhhhcCCccCCcEEEE-cCeEEEEEEEeeeEE
Q 005241 515 GFMFQNTCKTTFESIIFVFVMHPFDVGDRCVI-DGVQMIVEEMNILTT 561 (706)
Q Consensus 515 gfafq~tl~n~~~sgIfIfv~~PFdVGDrV~I-dg~~G~VeeI~LlsT 561 (706)
.|.+++..-. +.+. ..+.--.|||.|+. ||-.|.|++++=-+.
T Consensus 5 ~~~~~~a~~~-~~~~---~~m~~a~vgniief~dgl~g~vek~nensv 48 (81)
T COG4873 5 AKYFQKALLC-LKER---KLMKIAKVGNIIEFKDGLTGVVEKVNENSV 48 (81)
T ss_pred HHHHHhhhhh-hcee---eEeeeeeccceEEEcccceeeeeeecCCcE
Confidence 3455555444 3232 23556789999998 889999999875443
No 65
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=32.88 E-value=3.9e+02 Score=28.05 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 005241 238 PVLKKIFRALVAVLIGATIWLLK-IVLVKV 266 (706)
Q Consensus 238 ~~l~~v~kvL~~~lv~a~l~l~e-k~lvq~ 266 (706)
+|+.+..+.++.+++..+++|+- +++++.
T Consensus 177 Ew~~i~~~~i~~~~l~v~~~l~tltl~L~a 206 (232)
T PF10329_consen 177 EWFAILLRTIIKLVLLVVVILITLTLILRA 206 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888887776666553 344443
No 66
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=30.46 E-value=3.5e+02 Score=27.22 Aligned_cols=7 Identities=29% Similarity=0.505 Sum_probs=5.5
Q ss_pred hhcCCcc
Q 005241 533 FVMHPFD 539 (706)
Q Consensus 533 fv~~PFd 539 (706)
-++|||.
T Consensus 189 ~ld~Pf~ 195 (209)
T PF14023_consen 189 DLDNPFS 195 (209)
T ss_pred HhcCCCC
Confidence 5789985
No 67
>PRK05415 hypothetical protein; Provisional
Probab=29.77 E-value=96 Score=34.30 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=13.0
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHH
Q 005241 491 VSLLVMGLATTKVVFVVTSQLLLVGF 516 (706)
Q Consensus 491 i~L~ilGv~~~~lla~~gs~~laigf 516 (706)
+....+|.++...+..-...|++.|+
T Consensus 277 l~~~~l~~~l~~~ls~r~~QGv~~G~ 302 (341)
T PRK05415 277 LGMDWLSQDLAAKLSARAAQGVGNGL 302 (341)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445565555544444445555444
No 68
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=28.65 E-value=76 Score=40.07 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCccCCcEEEE----------cCeEEEEEEEeeeEEEEEecCCcEEEEecccc
Q 005241 536 HPFDVGDRCVI----------DGVQMIVEEMNILTTIFLRYDMEKIYYPNSVL 578 (706)
Q Consensus 536 ~PFdVGDrV~I----------dg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L 578 (706)
+.|.+||+|.+ ||..|+|++|+--..+++..+|+.|.+|...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHc
Confidence 57999999976 67899999997655556655778888876544
No 69
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=28.04 E-value=36 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=17.8
Q ss_pred Hhhhccc-hHHHHHHHHHHHHHHHHhhhe
Q 005241 122 RKERKIN-KRALIEWTLFLIIMTCLVCSL 149 (706)
Q Consensus 122 ~~~~~~~-~~~~~~w~~~~~~~~~li~sl 149 (706)
|||.++- .-..+-|+.+++.+++++.+.
T Consensus 4 kkKS~fekiT~v~v~lM~i~tvg~v~~~a 32 (35)
T PF13253_consen 4 KKKSTFEKITMVVVWLMLILTVGSVVASA 32 (35)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 334467888888888887654
No 70
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=27.93 E-value=80 Score=38.62 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCccCCcEEEE----------cCeEEEEEEEeeeEEEEEecCCcEEEEecccc
Q 005241 536 HPFDVGDRCVI----------DGVQMIVEEMNILTTIFLRYDMEKIYYPNSVL 578 (706)
Q Consensus 536 ~PFdVGDrV~I----------dg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L 578 (706)
..|.+||+|.. ||..|+|.+|.=-..+++..+|+.+.+|...+
T Consensus 606 ~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~ 658 (744)
T TIGR02768 606 RKFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEY 658 (744)
T ss_pred ceecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHh
Confidence 58999999976 67899999997555556555678888886654
No 71
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=27.80 E-value=7e+02 Score=30.66 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=4.4
Q ss_pred CCccccC
Q 005241 62 PKARFAE 68 (706)
Q Consensus 62 ~ksr~~~ 68 (706)
.-|||.|
T Consensus 45 ~~~~~~~ 51 (742)
T TIGR01299 45 SYSRFED 51 (742)
T ss_pred hHhhhcc
Confidence 4567774
No 72
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=27.50 E-value=5.3e+02 Score=24.28 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 005241 474 QQLHKLASAIVSVIIIVVSLLVMG 497 (706)
Q Consensus 474 ~~L~~ii~~iv~ii~iii~L~ilG 497 (706)
..+.-++.++..+++++..+..++
T Consensus 62 ~~~aP~lGLlGTv~Gmi~~f~~l~ 85 (139)
T PF01618_consen 62 ASIAPLLGLLGTVIGMIEAFQALA 85 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666667766666654
No 73
>PHA02513 V1 structural protein V1; Reviewed
Probab=26.80 E-value=2e+02 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.7
Q ss_pred hhcChHHHHhHHHhhhhhhhcccchHH
Q 005241 420 RFLKREEVHTIFPLFEGALETGRISKS 446 (706)
Q Consensus 420 ~f~~~e~a~~af~lfd~~~~~g~Is~~ 446 (706)
.||.+|+..+|..+|-.. .+|.|..+
T Consensus 20 kyft~eqi~ea~kif~qt-wdgnii~s 45 (135)
T PHA02513 20 KYFTKEQIAEATKIFYQT-WDGNIISS 45 (135)
T ss_pred hhcCHHHHHHHHHHHHHh-cCchHHHH
Confidence 467777777788888755 56666544
No 74
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=26.50 E-value=1.7e+02 Score=25.81 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred ccCCcEEEEcCe-EEEEEEEeeeE--------EEEEecCCcEEEEeccccc
Q 005241 538 FDVGDRCVIDGV-QMIVEEMNILT--------TIFLRYDMEKIYYPNSVLI 579 (706)
Q Consensus 538 FdVGDrV~Idg~-~G~VeeI~Lls--------T~f~t~Dg~~V~IPNs~L~ 579 (706)
|++||.|.-.+. .|.|+.|.-.. -++.-.++..+++|=..+.
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~~ 52 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNAD 52 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCGG
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCChh
Confidence 789999988652 45555554433 4555556668899976654
No 75
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.20 E-value=1.7e+02 Score=27.23 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=25.0
Q ss_pred ccCCcEEE-EcCeEEEEEEEeee--EEEEEecCCcEEEEec
Q 005241 538 FDVGDRCV-IDGVQMIVEEMNIL--TTIFLRYDMEKIYYPN 575 (706)
Q Consensus 538 FdVGDrV~-Idg~~G~VeeI~Ll--sT~f~t~Dg~~V~IPN 575 (706)
.++||+|. ++|..|+|.+|+-- +-++.. +|..+.+--
T Consensus 37 Lk~GD~VvT~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~r 76 (113)
T PRK06531 37 IQKGDEVVTIGGLYGTVDEVDTEAKTIVLDV-DGVYLTFEL 76 (113)
T ss_pred cCCCCEEEECCCcEEEEEEEecCCCEEEEEE-CCEEEEEEh
Confidence 47999997 58899999999852 233333 665554433
No 76
>COG4709 Predicted membrane protein [Function unknown]
Probab=25.57 E-value=5.3e+02 Score=26.27 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.7
Q ss_pred HHHHhhh
Q 005241 399 QRIFKHV 405 (706)
Q Consensus 399 r~If~~~ 405 (706)
++-|+.-
T Consensus 30 eehF~~a 36 (195)
T COG4709 30 EEHFREA 36 (195)
T ss_pred HHHHHhh
Confidence 3344433
No 77
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=25.22 E-value=1e+02 Score=33.03 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=31.4
Q ss_pred CCccCCcEEEEc---CeEEEEEEEeeeEEEEEecCC---cEEEEeccc
Q 005241 536 HPFDVGDRCVID---GVQMIVEEMNILTTIFLRYDM---EKIYYPNSV 577 (706)
Q Consensus 536 ~PFdVGDrV~Id---g~~G~VeeI~LlsT~f~t~Dg---~~V~IPNs~ 577 (706)
.+.-|||||.+. +..|.|++|--|.+.+.+.+. .++++-|..
T Consensus 33 ~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R~~~~~~~~~i~anvD 80 (287)
T cd01854 33 IKPVVGDWVEVEPDDDGEGVIVRVLPRKNLLSRPAAGGREQVIAANVD 80 (287)
T ss_pred CCccCCCEEEEEecCCCcEEEEEEECCCceEEccCCCCcceeEEEeCC
Confidence 468899999984 357999999999999988762 344444443
No 78
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=24.93 E-value=81 Score=25.37 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHH
Q 005241 245 RALVAVLIGATIWLLKIVLVKVLASSFHVTTFFDR 279 (706)
Q Consensus 245 kvL~~~lv~a~l~l~ek~lvq~iA~sFH~~~y~dR 279 (706)
|-|.++++++++.=.-|-+|+-+|..|-.+-|+++
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 45778888888888888889999999988888864
No 79
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=24.66 E-value=1.3e+02 Score=30.48 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=31.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhheecccccccccchhhHHH--HHHHHHHHHhhhhhh
Q 005241 123 KERKINKRALIEWTLFLIIMTCLVCSLTLRSLQDKLQWGLELWK--WCLMILVLFCGRLVS 181 (706)
Q Consensus 123 ~~~~~~~~~~~~w~~~~~~~~~li~sl~i~~~~~~~~w~~~lw~--W~~~~~v~~~grlvs 181 (706)
.|.++++..+++-+++++.++-+.++.. ..+....+=....|. ||+-++.+++|.+--
T Consensus 33 ~Ks~lk~l~~~h~ll~l~~~a~v~~~~L-~~i~~~~~p~p~~Wey~~~lS~ip~~~G~~s~ 92 (186)
T PF07086_consen 33 LKSRLKKLILFHALLWLLMAAKVSVDIL-LEISELQIPSPYQWEYIWCLSLIPSLLGLLSL 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCChhHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777776666555443222 222222233333443 888888888766543
No 80
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.22 E-value=2e+02 Score=27.94 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCccCCcEEEE-----cCeEEEEEEEeeeE--EEEEecC-CcE--EEEecccc
Q 005241 536 HPFDVGDRCVI-----DGVQMIVEEMNILT--TIFLRYD-MEK--IYYPNSVL 578 (706)
Q Consensus 536 ~PFdVGDrV~I-----dg~~G~VeeI~Lls--T~f~t~D-g~~--V~IPNs~L 578 (706)
.+|++||+|+| .|..|.|.+++-.. -++.-.+ ... |.+|++.|
T Consensus 93 ~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 56999999999 34789999985321 1122222 233 77888777
No 81
>COG4818 Predicted membrane protein [Function unknown]
Probab=24.13 E-value=58 Score=29.33 Aligned_cols=43 Identities=26% Similarity=0.604 Sum_probs=26.9
Q ss_pred hhhhhheehheehhhhhcceeEEEEecccccch-hhHHHHHHHHHHHhh
Q 005241 182 GWVVGFLVFLIERNFMLREKVLYFVYGLRKSFQ-NCAWLGFALVSWMIL 229 (706)
Q Consensus 182 ~w~v~~~v~~ie~nfll~k~vLyfv~gl~k~v~-~~iW~~~vl~~w~~l 229 (706)
||+.+++..++||.-..-| | ||++.-+. .-+|+..++++|.|-
T Consensus 14 gwitGllFlllEre~~FVr----F-HAmQS~ltF~~l~~l~ill~~iP~ 57 (105)
T COG4818 14 GWITGLLFLLLERESKFVR----F-HAMQSFLTFLGLWLLIILLAFIPY 57 (105)
T ss_pred HHHHHHHHHHhhccCccee----e-hhHHHHHHHHHHHHHHHHHHHhhh
Confidence 7999999999999433222 3 23321111 236888888888773
No 82
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.89 E-value=2.4e+02 Score=23.85 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=36.8
Q ss_pred ccCCcEEEEcCeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEE
Q 005241 538 FDVGDRCVIDGVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTI 600 (706)
Q Consensus 538 FdVGDrV~Idg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~~~~~i~~~V 600 (706)
+++|+.+ .|.|.++.=.--.+.-.+|..-.+|.+.+....+.+....=...+.+.+.|
T Consensus 12 ~~~G~i~-----~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV 69 (83)
T cd04461 12 LKPGMVV-----HGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKV 69 (83)
T ss_pred CCCCCEE-----EEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEE
Confidence 6777765 577888776655555556777899999998776655433222333444443
No 83
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=23.66 E-value=93 Score=27.25 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.6
Q ss_pred CccCCcEEEE-----cCeEEEEEEEee
Q 005241 537 PFDVGDRCVI-----DGVQMIVEEMNI 558 (706)
Q Consensus 537 PFdVGDrV~I-----dg~~G~VeeI~L 558 (706)
++..||+|+| -|..|.|.+|.-
T Consensus 8 ~I~~GD~V~Vi~G~dKGK~G~V~~V~~ 34 (83)
T CHL00141 8 HVKIGDTVKIISGSDKGKIGEVLKIIK 34 (83)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 6889999998 468899999864
No 84
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=23.40 E-value=3.7e+02 Score=31.52 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHhh---heecccccccccchhhH
Q 005241 118 KYRKRKERKINKRALIEWTLFLIIMTCLVC---SLTLRSLQDKLQWGLEL 164 (706)
Q Consensus 118 ~~~k~~~~~~~~~~~~~w~~~~~~~~~li~---sl~i~~~~~~~~w~~~l 164 (706)
.|+-+..++++|. -|++|+-|+.++|. .+.+-.|+......+-+
T Consensus 7 ~y~~~vs~~isWg---hwfa~fNi~~aivlG~rYl~~~dwp~tl~g~lY~ 53 (600)
T COG3083 7 RYREKVSRMISWG---HWFAFFNILLAIVLGSRYLFIMDWPSTLAGRLYL 53 (600)
T ss_pred HHHHHHHHHhhHH---HHHHHHHHHHHHHhCCcceeeccCcHHhHHHHHH
Confidence 3444444455554 57777777766655 45666777775444444
No 85
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=23.00 E-value=1.1e+02 Score=30.81 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhccC-CcceeeHhHHHhhcC---hHHHHhHHHhhhhhhhccc-chHHHHHHHHH
Q 005241 391 EWEARTTAQRIFKHVAKH-GAKYIEEQDLLRFLK---REEVHTIFPLFEGALETGR-ISKSSFRNWVV 453 (706)
Q Consensus 391 ~~~A~~lAr~If~~~~~~-g~~~I~~edl~~f~~---~e~a~~af~lfd~~~~~g~-Is~~~l~~~v~ 453 (706)
..|.++| ...|+.+.++ ++.+++.+++..... ..-+..++..|+.. .+|. |+.++|.+.+.
T Consensus 29 ~~EI~~L-~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~-~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 29 ANEIERL-YERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTD-GNGDPVDFEEFVRLLS 94 (187)
T ss_pred HHHHHHH-HHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhcc-CCCCccCHHHHHHHHh
Confidence 4455554 5668888888 889999999988653 34589999999976 8888 99998888775
No 86
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.00 E-value=3.1e+02 Score=27.94 Aligned_cols=16 Identities=19% Similarity=0.771 Sum_probs=9.7
Q ss_pred hHHHHHhHHhhhhhcCC
Q 005241 521 TCKTTFESIIFVFVMHP 537 (706)
Q Consensus 521 tl~n~~~sgIfIfv~~P 537 (706)
+++-++ .++|+++.-|
T Consensus 67 slklLL-iIvFllLTaP 82 (197)
T PRK12585 67 NARVLL-AVLFIFLTTP 82 (197)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 344444 5677777776
No 87
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=22.83 E-value=2.6e+02 Score=34.23 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHHhhc-cC-C--CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005241 212 SFQNCAWLGFALVSWMILF-PN-V--HKHNPVLKKIFRALVAVLIGATIWLLKIV 262 (706)
Q Consensus 212 ~v~~~iW~~~vl~~w~~lf-~~-v--~~~~~~l~~v~kvL~~~lv~a~l~l~ek~ 262 (706)
.+..|+|+..++.+|..+- .. . ......++.+.++++.++++.+.|.+-+.
T Consensus 432 ~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 432 ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888887542 22 1 11234677888888999888888877553
No 88
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=22.76 E-value=94 Score=29.04 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.5
Q ss_pred cCCccCCcEEEEcCeEEEEEEEee
Q 005241 535 MHPFDVGDRCVIDGVQMIVEEMNI 558 (706)
Q Consensus 535 ~~PFdVGDrV~Idg~~G~VeeI~L 558 (706)
...+.+||++.||+..+.|..+|=
T Consensus 49 ~~~i~~Gd~l~i~~~~y~ItaVG~ 72 (117)
T PF03829_consen 49 KGDIKPGDTLIIGGQEYTITAVGS 72 (117)
T ss_dssp G----TT-EEEETTEEEEEEEE-T
T ss_pred cCCcCCCCEEEECCeEEEEEEEhH
Confidence 456899999999999999999874
No 89
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=22.40 E-value=1e+02 Score=35.50 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhh
Q 005241 166 KWCLMILVLFCGRLVSGWVVG 186 (706)
Q Consensus 166 ~W~~~~~v~~~grlvs~w~v~ 186 (706)
+|.+++++...+-++++|+++
T Consensus 77 ~~~~~~~~~~~~~li~~~l~~ 97 (466)
T cd03685 77 AFLVYLGLNLVLVLVAALLVA 97 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356555555556666766654
No 90
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=22.31 E-value=32 Score=29.33 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=6.4
Q ss_pred chHHHHHHHHHHHHHH
Q 005241 128 NKRALIEWTLFLIIMT 143 (706)
Q Consensus 128 ~~~~~~~w~~~~~~~~ 143 (706)
++..++-++.++++++
T Consensus 47 ~~~~~ii~ii~v~ii~ 62 (72)
T PF12575_consen 47 NWIILIISIIFVLIIV 62 (72)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3434444444433333
No 91
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.25 E-value=1.1e+02 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=10.3
Q ss_pred hhhhhhhhhheehheeh
Q 005241 178 RLVSGWVVGFLVFLIER 194 (706)
Q Consensus 178 rlvs~w~v~~~v~~ie~ 194 (706)
-+++|+++.++...+.+
T Consensus 120 ~i~~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 120 SIVGGLVFYFIFKYIYP 136 (206)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35667777666555554
No 92
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=22.21 E-value=81 Score=26.70 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=26.5
Q ss_pred HHHhhhccCCcceeeHhHHHhhcChHHHHhHHHhhh
Q 005241 400 RIFKHVAKHGAKYIEEQDLLRFLKREEVHTIFPLFE 435 (706)
Q Consensus 400 ~If~~~~~~g~~~I~~edl~~f~~~e~a~~af~lfd 435 (706)
.-|+.+ ..|+.||+.+||.+.+.+++|+-+..-..
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l~pe~aey~~~~Mp 44 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSLTPEQAEYCISRMP 44 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS-CCCHHHHHCCSE
T ss_pred HHHHHH-HcCCCcccHHHHHHHcCcHHHHHHHHHCc
Confidence 346666 55999999999999999998877765443
No 93
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.57 E-value=98 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhh
Q 005241 391 EWEARTTAQRIFKHV 405 (706)
Q Consensus 391 ~~~A~~lAr~If~~~ 405 (706)
+..|..+|+++-+-+
T Consensus 410 RvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 410 RVAAISVAKRVAEEM 424 (1042)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467888888887665
No 94
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=21.50 E-value=3.2e+02 Score=22.25 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=37.2
Q ss_pred ccCCcEEEEcCeEEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEE
Q 005241 538 FDVGDRCVIDGVQMIVEEMNILTTIFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFT 599 (706)
Q Consensus 538 FdVGDrV~Idg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~s~~I~N~sRS~~~~~~i~~~ 599 (706)
+++||. ..|+|.++.-..-.+.-.+|..-++|.+.+....+.+....-.....+.+.
T Consensus 2 ~~~G~i-----v~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~ 58 (74)
T PF00575_consen 2 LKEGDI-----VEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVK 58 (74)
T ss_dssp SSTTSE-----EEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEE
T ss_pred CCCCCE-----EEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEE
Confidence 356666 468999998855544444588899999999987555555443333344443
No 95
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=21.24 E-value=2e+02 Score=23.57 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=29.2
Q ss_pred ccCCcEEEE------cCeEEEEEEEeeeEEEEEecCCcEEEEeccccc
Q 005241 538 FDVGDRCVI------DGVQMIVEEMNILTTIFLRYDMEKIYYPNSVLI 579 (706)
Q Consensus 538 FdVGDrV~I------dg~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~ 579 (706)
|++||.|+. ++....|.++|.=.-.=-.-=|+.|.+|-+.+.
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDikikC~gCg~~imlpR~~fe 49 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADIKIKCLGCGRQIMLPRSKFE 49 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcEEEEECCCCCEEEEeHHHHH
Confidence 789999998 668889988875432222233778888866553
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.14 E-value=2.8e+02 Score=34.23 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=33.9
Q ss_pred CCccCCcEEEEcC--eEEEEEEEeeeEEEEEecCCcEEEEeccccc
Q 005241 536 HPFDVGDRCVIDG--VQMIVEEMNILTTIFLRYDMEKIYYPNSVLI 579 (706)
Q Consensus 536 ~PFdVGDrV~Idg--~~G~VeeI~LlsT~f~t~Dg~~V~IPNs~L~ 579 (706)
++|++||+|.|.+ ..|+|.+|.=-.......++-++.+|=+.|.
T Consensus 635 ~~~~~Gd~V~v~~~~~~g~v~~i~~~~~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 635 EELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred cCCCCCCEEEEccCCceEEEEEEcCCCeEEEEECCEEEEEeHHHce
Confidence 6799999999965 8999999952124445567888889888884
No 97
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.97 E-value=1.1e+02 Score=26.94 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHhHHHhhhhhhhcc-cchHHHHHHHHHHH
Q 005241 426 EVHTIFPLFEGALETG-RISKSSFRNWVVYA 455 (706)
Q Consensus 426 ~a~~af~lfd~~~~~g-~Is~~~l~~~v~~i 455 (706)
++.++|..||..+++| .|+..+|+..+.+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 4677899999444887 59999999887653
No 98
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=1.4e+02 Score=27.06 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=25.9
Q ss_pred cCCccCCcEEEEc---------------CeEEEEEEEeeeEEEEEecCCc
Q 005241 535 MHPFDVGDRCVID---------------GVQMIVEEMNILTTIFLRYDME 569 (706)
Q Consensus 535 ~~PFdVGDrV~Id---------------g~~G~VeeI~LlsT~f~t~Dg~ 569 (706)
..-|++||.|.|+ |..|+|..+.=++-.+.-.||.
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~ 79 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGN 79 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCC
Confidence 3569999999882 3578998887777766665664
No 99
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=20.67 E-value=79 Score=27.82 Aligned_cols=17 Identities=41% Similarity=0.888 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005241 243 IFRALVAVLIGATIWLL 259 (706)
Q Consensus 243 v~kvL~~~lv~a~l~l~ 259 (706)
..-.|+++|++|++||+
T Consensus 43 ~~gal~~IFiGAllWL~ 59 (89)
T PF10762_consen 43 AHGALFSIFIGALLWLV 59 (89)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 55678999999999997
No 100
>PRK00098 GTPase RsgA; Reviewed
Probab=20.59 E-value=1e+02 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred CCccCCcEEEEc---CeEEEEEEEeeeEEEEEecCC
Q 005241 536 HPFDVGDRCVID---GVQMIVEEMNILTTIFLRYDM 568 (706)
Q Consensus 536 ~PFdVGDrV~Id---g~~G~VeeI~LlsT~f~t~Dg 568 (706)
.+.-|||||.++ +..|.|++|.-|.+.+.+.+-
T Consensus 36 ~~~~vGD~V~~~~~~~~~g~i~~i~~R~~~l~R~~~ 71 (298)
T PRK00098 36 NTPAVGDRVEFSAENNDEGVILEIHERKNLLVRPPI 71 (298)
T ss_pred CCcCCCCEEEEEECCCCcEEEEEEeCCCceEECCCC
Confidence 345799999985 356999999999999988664
No 101
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=20.43 E-value=2.2e+02 Score=27.97 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=29.6
Q ss_pred cCCccCCcEEEE-----cCeEEEEEEEe---eeEEEEEecCCcE--EEEeccc
Q 005241 535 MHPFDVGDRCVI-----DGVQMIVEEMN---ILTTIFLRYDMEK--IYYPNSV 577 (706)
Q Consensus 535 ~~PFdVGDrV~I-----dg~~G~VeeI~---LlsT~f~t~Dg~~--V~IPNs~ 577 (706)
..+|.+||+|.| .|.+|.|.+++ =+.++..+.=|+. |-++...
T Consensus 124 ~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~~ 176 (181)
T PRK05609 124 KVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFSQ 176 (181)
T ss_pred ccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchHH
Confidence 467999999999 34899999986 3556666655653 3444433
Done!