Query 005242
Match_columns 706
No_of_seqs 309 out of 1438
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 20:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 2.4E-56 5.2E-61 509.9 21.0 487 9-527 2-548 (775)
2 KOG1845 MORC family ATPases [C 99.9 1.6E-24 3.6E-29 249.2 7.0 327 181-552 1-370 (775)
3 PRK05218 heat shock protein 90 99.7 4.2E-16 9E-21 179.7 22.5 95 142-239 24-144 (613)
4 PF13589 HATPase_c_3: Histidin 99.7 1E-17 2.2E-22 158.1 4.2 94 144-241 2-98 (137)
5 PRK00095 mutL DNA mismatch rep 99.6 1.2E-14 2.5E-19 168.0 20.7 103 130-240 6-117 (617)
6 COG0326 HtpG Molecular chapero 99.6 1.6E-14 3.4E-19 164.1 19.2 95 145-242 28-147 (623)
7 COG0323 MutL DNA mismatch repa 99.6 2.5E-14 5.4E-19 165.6 19.8 238 131-458 8-265 (638)
8 PRK14083 HSP90 family protein; 99.6 6.4E-14 1.4E-18 161.1 19.8 265 142-510 21-325 (601)
9 TIGR00585 mutl DNA mismatch re 99.5 3.6E-13 7.8E-18 143.5 19.3 101 129-237 5-114 (312)
10 PTZ00130 heat shock protein 90 99.5 2.4E-13 5.1E-18 159.1 19.0 146 143-303 87-265 (814)
11 PTZ00272 heat shock protein 83 99.5 1.2E-12 2.6E-17 152.6 18.5 144 145-302 26-199 (701)
12 KOG0019 Molecular chaperone (H 99.0 1.3E-09 2.8E-14 123.1 9.5 145 140-303 55-229 (656)
13 COG1389 DNA topoisomerase VI, 99.0 1E-08 2.3E-13 113.0 15.4 108 133-241 19-141 (538)
14 KOG1979 DNA mismatch repair pr 98.9 3.6E-09 7.7E-14 118.9 8.2 292 130-510 11-336 (694)
15 PRK05559 DNA topoisomerase IV 98.8 1.2E-08 2.5E-13 118.9 10.8 110 122-239 16-140 (631)
16 KOG0020 Endoplasmic reticulum 98.8 8E-09 1.7E-13 114.1 7.1 95 143-242 96-219 (785)
17 PRK14868 DNA topoisomerase VI 98.8 3.9E-08 8.4E-13 114.9 12.6 96 143-240 45-149 (795)
18 PRK04184 DNA topoisomerase VI 98.7 5.5E-07 1.2E-11 102.9 16.9 109 133-241 19-143 (535)
19 PRK05644 gyrB DNA gyrase subun 98.7 1E-07 2.2E-12 111.3 11.1 121 108-239 5-140 (638)
20 KOG1978 DNA mismatch repair pr 98.6 7.9E-08 1.7E-12 110.3 8.7 101 131-239 5-114 (672)
21 TIGR01059 gyrB DNA gyrase, B s 98.6 4E-07 8.6E-12 106.7 12.6 109 123-239 10-133 (654)
22 PF02518 HATPase_c: Histidine 98.5 6.4E-07 1.4E-11 80.1 10.0 93 145-240 6-101 (111)
23 PRK14939 gyrB DNA gyrase subun 98.5 3.8E-07 8.1E-12 107.9 9.4 110 122-239 15-140 (756)
24 PRK14867 DNA topoisomerase VI 98.4 1.5E-06 3.3E-11 101.2 13.2 107 133-240 19-140 (659)
25 TIGR01052 top6b DNA topoisomer 98.4 9.1E-07 2E-11 100.2 10.2 107 133-240 11-132 (488)
26 TIGR01055 parE_Gneg DNA topois 98.3 1E-06 2.2E-11 102.8 7.8 107 122-239 12-133 (625)
27 KOG1977 DNA mismatch repair pr 98.2 2.5E-06 5.4E-11 98.0 8.0 88 143-239 20-114 (1142)
28 smart00433 TOP2c Topoisomerase 98.0 5.1E-06 1.1E-10 96.6 5.4 86 148-239 5-104 (594)
29 COG3290 CitA Signal transducti 98.0 2.1E-05 4.6E-10 89.3 9.4 93 142-240 425-522 (537)
30 COG0187 GyrB Type IIA topoisom 98.0 7.6E-06 1.6E-10 94.1 5.7 111 122-239 14-139 (635)
31 TIGR01058 parE_Gpos DNA topois 98.0 1.5E-05 3.4E-10 93.2 8.0 110 122-239 13-137 (637)
32 cd00075 HATPase_c Histidine ki 97.8 0.00025 5.4E-09 59.4 10.0 89 146-237 2-93 (103)
33 smart00387 HATPase_c Histidine 97.7 0.00042 9.2E-09 59.0 10.0 89 145-236 6-97 (111)
34 PRK10604 sensor protein RstB; 97.6 0.00032 6.8E-09 77.7 11.1 92 144-240 319-414 (433)
35 PRK09303 adaptive-response sen 97.6 0.00041 9E-09 75.8 11.3 94 145-241 273-369 (380)
36 PRK11006 phoR phosphate regulo 97.5 0.00038 8.2E-09 76.6 9.8 94 144-240 317-414 (430)
37 PRK09470 cpxA two-component se 97.5 0.0005 1.1E-08 75.0 10.4 91 145-240 354-448 (461)
38 PRK11086 sensory histidine kin 97.5 0.00083 1.8E-08 75.0 11.6 90 144-240 433-526 (542)
39 TIGR02938 nifL_nitrog nitrogen 97.4 0.00077 1.7E-08 73.2 10.7 92 145-240 388-485 (494)
40 PRK10364 sensor protein ZraS; 97.4 0.00051 1.1E-08 76.1 9.3 90 143-240 347-439 (457)
41 PLN03237 DNA topoisomerase 2; 97.4 0.00093 2E-08 83.7 12.0 89 144-237 77-180 (1465)
42 PRK09467 envZ osmolarity senso 97.4 0.00091 2E-08 72.9 10.8 91 144-240 331-424 (435)
43 TIGR01386 cztS_silS_copS heavy 97.4 0.00076 1.6E-08 73.3 10.0 92 144-239 353-448 (457)
44 COG0642 BaeS Signal transducti 97.4 0.001 2.2E-08 67.0 10.0 88 143-237 227-317 (336)
45 PRK10549 signal transduction h 97.4 0.00074 1.6E-08 74.1 9.7 94 144-240 352-449 (466)
46 PRK15053 dpiB sensor histidine 97.4 0.001 2.2E-08 75.0 11.0 93 144-240 432-530 (545)
47 TIGR02966 phoR_proteo phosphat 97.3 0.00093 2E-08 68.7 9.5 94 144-240 229-326 (333)
48 PRK10755 sensor protein BasS/P 97.3 0.00081 1.7E-08 71.7 8.7 90 143-238 246-338 (356)
49 PRK11100 sensory histidine kin 97.3 0.0011 2.4E-08 72.2 9.5 94 143-239 367-463 (475)
50 PRK11360 sensory histidine kin 97.2 0.0016 3.5E-08 72.4 10.2 89 145-240 501-592 (607)
51 TIGR02916 PEP_his_kin putative 97.1 0.0013 2.9E-08 77.2 9.1 88 145-240 580-671 (679)
52 PRK11073 glnL nitrogen regulat 97.1 0.0029 6.3E-08 66.9 10.7 90 144-238 237-337 (348)
53 PRK13837 two-component VirA-li 97.1 0.0025 5.5E-08 76.7 10.9 91 144-240 560-666 (828)
54 PRK10815 sensor protein PhoQ; 97.0 0.003 6.5E-08 71.7 10.5 88 145-240 379-469 (485)
55 PRK11107 hybrid sensory histid 96.9 0.0039 8.4E-08 74.7 10.3 98 144-241 408-510 (919)
56 PRK15347 two component system 96.9 0.0046 1E-07 74.1 10.5 90 144-240 513-605 (921)
57 TIGR03785 marine_sort_HK prote 96.8 0.0055 1.2E-07 72.9 10.9 91 145-238 598-692 (703)
58 PRK11091 aerobic respiration c 96.8 0.0059 1.3E-07 72.5 11.1 94 144-240 398-496 (779)
59 PRK10547 chemotaxis protein Ch 96.8 0.0065 1.4E-07 72.0 11.3 93 147-241 388-515 (670)
60 PRK10490 sensor protein KdpD; 96.8 0.004 8.6E-08 76.0 9.8 93 144-240 778-873 (895)
61 PRK10618 phosphotransfer inter 96.8 0.0052 1.1E-07 75.1 10.6 95 144-240 565-663 (894)
62 COG4191 Signal transduction hi 96.8 0.0043 9.3E-08 71.6 9.1 93 143-240 496-592 (603)
63 PRK11466 hybrid sensory histid 96.8 0.0068 1.5E-07 72.9 11.0 90 144-240 561-653 (914)
64 TIGR02956 TMAO_torS TMAO reduc 96.7 0.0073 1.6E-07 73.0 10.8 92 144-240 579-674 (968)
65 PRK09835 sensor kinase CusS; P 96.7 0.0057 1.2E-07 67.4 8.8 91 144-237 375-469 (482)
66 PRK10337 sensor protein QseC; 96.7 0.008 1.7E-07 66.0 9.7 87 144-239 352-441 (449)
67 PRK09959 hybrid sensory histid 96.6 0.011 2.3E-07 73.6 11.2 96 144-240 828-927 (1197)
68 PTZ00109 DNA gyrase subunit b; 96.5 0.00079 1.7E-08 80.9 1.0 119 110-239 99-272 (903)
69 PRK10841 hybrid sensory kinase 96.5 0.013 2.7E-07 72.0 11.0 93 144-240 562-658 (924)
70 PTZ00108 DNA topoisomerase 2-l 96.4 0.0042 9.1E-08 78.2 6.5 90 144-238 57-164 (1388)
71 PRK13557 histidine kinase; Pro 96.4 0.018 3.9E-07 63.9 10.7 92 145-240 278-385 (540)
72 TIGR01925 spIIAB anti-sigma F 96.3 0.03 6.4E-07 52.2 9.9 87 145-239 40-128 (137)
73 COG2205 KdpD Osmosensitive K+ 96.1 0.022 4.7E-07 68.1 9.7 108 118-240 759-870 (890)
74 PHA02569 39 DNA topoisomerase 96.0 0.0048 1E-07 72.3 3.8 85 148-239 49-152 (602)
75 COG4585 Signal transduction hi 95.9 0.034 7.3E-07 60.5 9.3 77 144-240 279-356 (365)
76 PRK04069 serine-protein kinase 95.8 0.015 3.3E-07 56.6 5.6 87 145-235 43-131 (161)
77 COG0643 CheA Chemotaxis protei 95.6 0.038 8.2E-07 66.2 9.1 94 148-241 436-565 (716)
78 KOG0787 Dehydrogenase kinase [ 95.6 0.048 1E-06 60.3 9.1 90 147-238 263-369 (414)
79 PLN03128 DNA topoisomerase 2; 95.6 0.016 3.5E-07 72.2 6.0 88 145-237 53-155 (1135)
80 PF13581 HATPase_c_2: Histidin 95.4 0.056 1.2E-06 49.5 7.5 81 144-233 31-113 (125)
81 PRK11644 sensory histidine kin 95.4 0.057 1.2E-06 61.7 9.2 70 144-235 410-482 (495)
82 COG3850 NarQ Signal transducti 95.3 0.056 1.2E-06 62.1 8.6 77 145-241 482-560 (574)
83 PRK03660 anti-sigma F factor; 95.3 0.13 2.9E-06 48.3 9.7 87 145-239 40-128 (146)
84 PRK10600 nitrate/nitrite senso 95.1 0.068 1.5E-06 61.5 8.7 77 143-240 468-547 (569)
85 PRK13560 hypothetical protein; 94.7 0.08 1.7E-06 62.0 8.1 74 147-236 714-792 (807)
86 TIGR01924 rsbW_low_gc serine-p 94.5 0.1 2.2E-06 50.9 7.0 87 145-235 43-131 (159)
87 COG2972 Predicted signal trans 93.2 0.12 2.5E-06 58.6 5.4 84 147-239 353-442 (456)
88 PRK10935 nitrate/nitrite senso 92.4 0.62 1.3E-05 52.9 9.7 76 145-240 472-550 (565)
89 COG4251 Bacteriophytochrome (l 92.3 0.39 8.6E-06 56.4 8.0 105 127-240 621-732 (750)
90 COG5000 NtrY Signal transducti 91.6 0.29 6.3E-06 57.3 5.9 60 147-206 603-667 (712)
91 KOG4005 Transcription factor X 91.5 0.51 1.1E-05 49.4 6.9 51 646-696 97-147 (292)
92 COG4192 Signal transduction hi 91.4 0.47 1E-05 54.0 7.1 64 144-208 564-627 (673)
93 COG3852 NtrB Signal transducti 90.4 1.2 2.6E-05 48.7 8.8 90 144-238 241-344 (363)
94 COG5002 VicK Signal transducti 89.7 0.98 2.1E-05 50.2 7.4 88 146-236 344-435 (459)
95 COG3920 Signal transduction hi 86.9 1 2.2E-05 46.6 5.4 47 147-193 125-173 (221)
96 COG2172 RsbW Anti-sigma regula 86.4 2.8 6.1E-05 40.9 7.7 89 143-239 39-130 (146)
97 COG3851 UhpB Signal transducti 85.5 2.7 5.8E-05 47.0 7.7 84 131-237 397-484 (497)
98 PRK15422 septal ring assembly 83.3 5.3 0.00012 35.5 7.1 54 645-698 24-77 (79)
99 PRK13559 hypothetical protein; 82.4 2.2 4.7E-05 45.6 5.5 75 145-237 268-348 (361)
100 TIGR02894 DNA_bind_RsfA transc 80.9 6.6 0.00014 39.2 7.7 51 648-698 99-149 (161)
101 COG3074 Uncharacterized protei 77.1 10 0.00023 33.0 6.8 54 643-696 22-75 (79)
102 PF11577 NEMO: NF-kappa-B esse 76.9 11 0.00023 32.7 6.9 48 649-696 20-67 (68)
103 PF06005 DUF904: Protein of un 75.4 19 0.00042 31.4 8.1 52 647-698 19-70 (72)
104 PF08826 DMPK_coil: DMPK coile 73.6 13 0.00028 31.6 6.4 43 646-688 18-60 (61)
105 PF06785 UPF0242: Uncharacteri 71.5 13 0.00027 41.2 7.4 53 647-699 135-187 (401)
106 PF04849 HAP1_N: HAP1 N-termin 69.2 9.9 0.00021 41.6 6.0 52 646-697 167-222 (306)
107 KOG1962 B-cell receptor-associ 69.1 13 0.00028 38.8 6.6 54 647-700 152-205 (216)
108 PF14501 HATPase_c_5: GHKL dom 66.0 15 0.00032 32.7 5.7 42 145-188 6-49 (100)
109 COG4564 Signal transduction hi 65.7 22 0.00047 39.7 7.7 78 145-239 356-438 (459)
110 PF12325 TMF_TATA_bd: TATA ele 64.8 30 0.00064 33.1 7.6 52 646-697 51-119 (120)
111 PF01119 DNA_mis_repair: DNA m 61.6 30 0.00065 32.1 7.0 81 430-510 23-118 (119)
112 TIGR03752 conj_TIGR03752 integ 60.1 27 0.00059 40.4 7.6 31 646-676 73-103 (472)
113 PF09726 Macoilin: Transmembra 57.4 33 0.00071 41.7 8.0 54 646-699 460-513 (697)
114 PF00170 bZIP_1: bZIP transcri 57.1 45 0.00097 27.8 6.6 36 662-697 28-63 (64)
115 PF09726 Macoilin: Transmembra 57.1 59 0.0013 39.6 10.1 56 645-700 417-479 (697)
116 PF07106 TBPIP: Tat binding pr 56.3 31 0.00067 34.1 6.4 54 647-700 73-135 (169)
117 COG4026 Uncharacterized protei 54.4 41 0.00088 35.6 7.1 53 648-700 144-196 (290)
118 PF07106 TBPIP: Tat binding pr 54.3 42 0.00091 33.1 7.1 51 645-695 78-137 (169)
119 PF12329 TMF_DNA_bd: TATA elem 53.2 74 0.0016 27.8 7.5 56 645-700 11-66 (74)
120 TIGR00219 mreC rod shape-deter 51.9 29 0.00064 37.4 5.9 20 646-665 66-85 (283)
121 KOG1318 Helix loop helix trans 51.8 27 0.00058 39.8 5.8 40 659-698 289-328 (411)
122 KOG0355 DNA topoisomerase type 51.5 34 0.00074 41.9 6.8 50 144-196 53-102 (842)
123 COG3275 LytS Putative regulato 51.1 14 0.00031 42.8 3.5 44 149-194 461-507 (557)
124 PF07888 CALCOCO1: Calcium bin 50.4 53 0.0011 38.8 8.0 50 650-699 147-196 (546)
125 PF10481 CENP-F_N: Cenp-F N-te 50.1 49 0.0011 35.9 7.0 57 644-700 58-121 (307)
126 COG2433 Uncharacterized conser 50.0 54 0.0012 39.1 7.9 55 646-700 443-507 (652)
127 KOG4571 Activating transcripti 48.1 52 0.0011 36.0 6.9 37 652-688 247-283 (294)
128 PF07989 Microtub_assoc: Micro 48.0 94 0.002 27.3 7.4 51 646-696 7-72 (75)
129 PF11544 Spc42p: Spindle pole 46.9 1.1E+02 0.0023 27.3 7.4 50 650-699 2-51 (76)
130 PF02344 Myc-LZ: Myc leucine z 45.8 47 0.001 24.9 4.2 26 656-681 4-29 (32)
131 PF08647 BRE1: BRE1 E3 ubiquit 45.1 1E+02 0.0023 28.0 7.5 56 646-701 3-58 (96)
132 PF07061 Swi5: Swi5; InterPro 44.8 37 0.00079 30.5 4.4 41 657-697 4-48 (83)
133 KOG1924 RhoA GTPase effector D 44.7 1.4E+02 0.0031 36.9 10.3 68 445-519 409-489 (1102)
134 PF04156 IncA: IncA protein; 44.0 1E+02 0.0022 30.7 8.0 55 646-700 130-184 (191)
135 PF04111 APG6: Autophagy prote 43.6 92 0.002 34.2 8.2 49 646-694 50-98 (314)
136 COG3074 Uncharacterized protei 43.1 79 0.0017 27.8 5.9 41 657-697 22-62 (79)
137 PRK10884 SH3 domain-containing 42.4 98 0.0021 32.2 7.7 30 670-699 135-164 (206)
138 PRK10884 SH3 domain-containing 41.4 1E+02 0.0023 32.0 7.7 50 649-698 96-149 (206)
139 PF13815 Dzip-like_N: Iguana/D 41.3 1.2E+02 0.0025 28.6 7.5 46 652-697 72-117 (118)
140 KOG2751 Beclin-like protein [S 40.8 83 0.0018 36.1 7.4 51 646-696 183-233 (447)
141 PF03962 Mnd1: Mnd1 family; I 40.2 1.2E+02 0.0026 30.9 7.9 22 679-700 108-129 (188)
142 PRK14141 heat shock protein Gr 40.0 22 0.00047 37.0 2.6 27 671-697 35-61 (209)
143 KOG3119 Basic region leucine z 39.2 96 0.0021 33.4 7.4 56 645-700 193-248 (269)
144 TIGR03752 conj_TIGR03752 integ 39.1 95 0.0021 36.1 7.6 54 646-699 80-141 (472)
145 PRK13922 rod shape-determining 38.7 51 0.0011 34.9 5.2 27 646-672 69-95 (276)
146 PRK13729 conjugal transfer pil 37.9 98 0.0021 36.1 7.5 52 648-699 68-122 (475)
147 PF07888 CALCOCO1: Calcium bin 37.9 1.1E+02 0.0023 36.4 7.9 28 646-673 150-177 (546)
148 PF10234 Cluap1: Clusterin-ass 37.5 99 0.0022 33.5 7.1 47 647-693 170-216 (267)
149 PF00261 Tropomyosin: Tropomyo 37.1 1.5E+02 0.0032 31.1 8.2 53 647-699 177-229 (237)
150 cd00782 MutL_Trans MutL_Trans: 36.9 97 0.0021 28.4 6.2 26 432-457 29-56 (122)
151 PF13815 Dzip-like_N: Iguana/D 36.8 87 0.0019 29.4 5.9 32 669-700 82-113 (118)
152 smart00338 BRLZ basic region l 36.4 2E+02 0.0044 23.9 7.4 48 653-700 11-59 (65)
153 PF08172 CASP_C: CASP C termin 36.0 1.3E+02 0.0028 32.2 7.6 53 648-700 81-133 (248)
154 PF09744 Jnk-SapK_ap_N: JNK_SA 35.4 85 0.0019 31.4 5.8 29 650-678 86-114 (158)
155 PF12718 Tropomyosin_1: Tropom 35.2 1.5E+02 0.0033 29.0 7.4 48 651-698 5-52 (143)
156 PF09744 Jnk-SapK_ap_N: JNK_SA 35.1 77 0.0017 31.7 5.5 17 646-662 50-66 (158)
157 TIGR02449 conserved hypothetic 34.9 1.7E+02 0.0037 25.3 6.7 48 647-701 15-62 (65)
158 KOG4005 Transcription factor X 34.8 89 0.0019 33.4 6.0 46 646-691 104-149 (292)
159 PF00170 bZIP_1: bZIP transcri 34.8 83 0.0018 26.2 4.9 50 652-701 10-60 (64)
160 PF10205 KLRAQ: Predicted coil 34.1 2.1E+02 0.0046 26.8 7.7 28 646-673 5-32 (102)
161 COG4026 Uncharacterized protei 34.1 1.7E+02 0.0037 31.2 7.8 54 646-699 128-181 (290)
162 PRK03992 proteasome-activating 33.9 1.1E+02 0.0024 34.3 7.1 47 648-694 3-49 (389)
163 PRK15422 septal ring assembly 33.8 1.4E+02 0.0031 26.8 6.2 45 654-698 19-63 (79)
164 smart00338 BRLZ basic region l 33.4 1.5E+02 0.0032 24.7 6.2 33 657-689 30-62 (65)
165 PF05529 Bap31: B-cell recepto 33.2 1.5E+02 0.0033 29.7 7.4 53 647-699 119-186 (192)
166 cd03486 MutL_Trans_MLH3 MutL_T 32.5 77 0.0017 30.4 4.9 26 432-457 30-55 (141)
167 PF11559 ADIP: Afadin- and alp 32.4 2.1E+02 0.0045 27.6 7.9 46 648-693 68-113 (151)
168 PF00038 Filament: Intermediat 32.3 1.8E+02 0.0039 31.1 8.2 55 646-700 230-288 (312)
169 PF00038 Filament: Intermediat 31.4 1.9E+02 0.0041 30.9 8.2 52 646-697 75-126 (312)
170 PF08581 Tup_N: Tup N-terminal 31.3 3.4E+02 0.0074 24.2 8.3 55 646-700 11-76 (79)
171 PRK14153 heat shock protein Gr 31.2 74 0.0016 32.9 4.7 26 673-698 39-64 (194)
172 KOG0288 WD40 repeat protein Ti 31.2 1.3E+02 0.0029 34.5 7.0 39 644-682 53-91 (459)
173 PRK14156 heat shock protein Gr 31.2 93 0.002 31.7 5.4 35 666-700 26-60 (177)
174 PF14662 CCDC155: Coiled-coil 31.1 1.7E+02 0.0038 30.3 7.3 41 647-687 75-115 (193)
175 PF12329 TMF_DNA_bd: TATA elem 30.8 1.7E+02 0.0036 25.6 6.2 38 653-690 33-70 (74)
176 PRK14143 heat shock protein Gr 30.5 77 0.0017 33.7 4.9 20 671-690 85-104 (238)
177 COG5019 CDC3 Septin family pro 30.2 1.6E+02 0.0036 33.3 7.5 46 657-702 325-370 (373)
178 PF10211 Ax_dynein_light: Axon 29.9 2.2E+02 0.0047 29.1 7.8 48 651-698 139-187 (189)
179 PF07200 Mod_r: Modifier of ru 29.8 2.2E+02 0.0047 27.4 7.5 55 646-700 34-88 (150)
180 PF06005 DUF904: Protein of un 29.8 3.8E+02 0.0082 23.5 8.2 51 649-699 14-64 (72)
181 cd03485 MutL_Trans_hPMS_1_like 29.6 1.2E+02 0.0026 28.8 5.6 75 433-507 33-128 (132)
182 COG1730 GIM5 Predicted prefold 29.2 1.5E+02 0.0033 29.3 6.4 41 657-697 98-138 (145)
183 PF08614 ATG16: Autophagy prot 28.5 2.7E+02 0.0057 28.3 8.2 56 644-699 114-169 (194)
184 PTZ00454 26S protease regulato 27.7 1.6E+02 0.0035 33.3 7.2 47 647-693 16-62 (398)
185 PRK14148 heat shock protein Gr 27.7 1.1E+02 0.0023 31.7 5.2 16 650-665 44-59 (195)
186 PF03904 DUF334: Domain of unk 27.4 1.2E+02 0.0025 32.3 5.4 50 643-692 40-89 (230)
187 PRK14158 heat shock protein Gr 27.3 1.1E+02 0.0024 31.6 5.2 33 660-692 47-79 (194)
188 COG2865 Predicted transcriptio 27.3 55 0.0012 38.0 3.4 70 143-222 269-352 (467)
189 COG1340 Uncharacterized archae 27.2 2.4E+02 0.0052 31.1 7.9 54 647-700 21-74 (294)
190 PF10211 Ax_dynein_light: Axon 26.7 2.7E+02 0.0059 28.4 7.9 52 649-700 123-175 (189)
191 cd03484 MutL_Trans_hPMS_2_like 26.5 1.6E+02 0.0035 28.3 6.0 27 431-457 46-76 (142)
192 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.4 2.4E+02 0.0051 26.9 7.0 46 647-692 4-49 (132)
193 TIGR02209 ftsL_broad cell divi 26.4 1.3E+02 0.0027 26.1 4.8 30 671-700 28-57 (85)
194 PF10205 KLRAQ: Predicted coil 26.2 2.9E+02 0.0063 26.0 7.2 52 650-701 2-53 (102)
195 PRK14163 heat shock protein Gr 26.2 1E+02 0.0022 32.4 4.8 31 661-691 48-78 (214)
196 PF10186 Atg14: UV radiation r 25.8 2.6E+02 0.0056 29.2 7.9 9 653-661 34-42 (302)
197 PRK14160 heat shock protein Gr 25.6 1.4E+02 0.0031 31.2 5.7 30 670-699 64-93 (211)
198 PF06810 Phage_GP20: Phage min 25.5 2.8E+02 0.006 27.5 7.5 46 646-691 20-68 (155)
199 COG1842 PspA Phage shock prote 24.9 2.9E+02 0.0064 29.1 7.9 56 646-701 85-140 (225)
200 PF10473 CENP-F_leu_zip: Leuci 24.9 3.4E+02 0.0074 26.8 7.8 53 646-698 73-125 (140)
201 PF09738 DUF2051: Double stran 24.8 2.8E+02 0.006 30.7 8.0 77 605-700 83-159 (302)
202 PF07200 Mod_r: Modifier of ru 24.7 3.1E+02 0.0067 26.3 7.6 53 647-699 28-80 (150)
203 PRK14140 heat shock protein Gr 24.7 1.1E+02 0.0024 31.5 4.7 28 672-699 42-69 (191)
204 PF15294 Leu_zip: Leucine zipp 24.7 1.7E+02 0.0037 32.0 6.2 46 643-688 129-174 (278)
205 PF14645 Chibby: Chibby family 24.6 1.2E+02 0.0027 28.7 4.6 20 646-665 78-97 (116)
206 PF15136 UPF0449: Uncharacteri 24.4 1.1E+02 0.0025 28.4 4.2 32 655-686 66-97 (97)
207 PRK14154 heat shock protein Gr 24.3 1.1E+02 0.0024 31.9 4.7 47 643-696 49-95 (208)
208 PF04949 Transcrip_act: Transc 24.2 1.9E+02 0.0041 28.9 5.9 44 657-700 35-78 (159)
209 PF03938 OmpH: Outer membrane 24.0 2.4E+02 0.0053 27.0 6.7 38 661-698 30-67 (158)
210 PF12507 HCMV_UL139: Human Cyt 23.8 1.4E+02 0.0031 28.7 4.8 42 659-700 29-70 (121)
211 PF06156 DUF972: Protein of un 23.5 3.1E+02 0.0067 25.7 7.0 46 655-700 3-48 (107)
212 cd03483 MutL_Trans_MLH1 MutL_T 23.3 2.8E+02 0.0061 26.2 6.9 78 433-510 35-126 (127)
213 PF07716 bZIP_2: Basic region 23.2 2.1E+02 0.0046 23.1 5.2 42 655-696 12-54 (54)
214 TIGR02894 DNA_bind_RsfA transc 23.0 2.8E+02 0.006 28.1 6.9 43 658-700 102-144 (161)
215 PF05667 DUF812: Protein of un 22.9 2.1E+02 0.0046 34.4 7.2 41 661-701 441-481 (594)
216 PF11932 DUF3450: Protein of u 22.7 3.4E+02 0.0073 28.5 8.0 50 646-695 56-105 (251)
217 KOG2077 JNK/SAPK-associated pr 22.6 1.5E+02 0.0032 35.4 5.6 42 647-688 330-371 (832)
218 cd03482 MutL_Trans_MutL MutL_T 22.6 2.5E+02 0.0054 26.4 6.3 78 433-510 30-122 (123)
219 KOG4674 Uncharacterized conser 22.6 2E+02 0.0044 38.7 7.3 54 647-700 1230-1283(1822)
220 COG1956 GAF domain-containing 22.5 35 0.00075 34.4 0.6 35 442-478 51-87 (163)
221 PRK14145 heat shock protein Gr 22.5 1.5E+02 0.0033 30.7 5.2 35 666-700 44-78 (196)
222 PF03962 Mnd1: Mnd1 family; I 22.4 3.2E+02 0.0069 27.9 7.5 21 671-691 107-127 (188)
223 PF07851 TMPIT: TMPIT-like pro 22.2 3.4E+02 0.0073 30.4 8.1 55 646-700 4-58 (330)
224 COG1792 MreC Cell shape-determ 22.1 1.8E+02 0.0039 31.6 5.9 38 645-686 65-102 (284)
225 PRK14162 heat shock protein Gr 22.1 1.5E+02 0.0032 30.7 5.0 22 671-692 57-78 (194)
226 PRK12705 hypothetical protein; 22.0 2.4E+02 0.0051 33.4 7.2 50 651-700 86-135 (508)
227 PRK14151 heat shock protein Gr 21.6 1.3E+02 0.0029 30.5 4.5 19 647-665 21-39 (176)
228 PF14197 Cep57_CLD_2: Centroso 21.5 3.7E+02 0.0081 23.3 6.6 51 646-696 19-69 (69)
229 PF12325 TMF_TATA_bd: TATA ele 21.3 4.7E+02 0.01 25.1 7.9 37 647-683 24-60 (120)
230 PF04849 HAP1_N: HAP1 N-termin 21.3 2.5E+02 0.0054 31.1 6.8 28 647-674 175-202 (306)
231 PF10267 Tmemb_cc2: Predicted 21.1 1.3E+03 0.028 26.6 17.0 36 486-521 46-82 (395)
232 PF11853 DUF3373: Protein of u 20.8 71 0.0015 37.3 2.7 29 668-696 25-53 (489)
233 PF05667 DUF812: Protein of un 20.6 3.2E+02 0.0068 33.0 8.0 56 645-700 327-382 (594)
234 COG3167 PilO Tfp pilus assembl 20.5 2.2E+02 0.0049 29.6 5.8 38 661-698 50-97 (211)
235 PF08317 Spc7: Spc7 kinetochor 20.3 2.4E+02 0.0051 31.0 6.4 53 648-700 211-263 (325)
236 PRK10780 periplasmic chaperone 20.2 2.7E+02 0.0059 27.4 6.3 23 662-684 38-60 (165)
237 PF07989 Microtub_assoc: Micro 20.1 2.3E+02 0.005 24.9 5.1 40 645-684 35-74 (75)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-56 Score=509.89 Aligned_cols=487 Identities=42% Similarity=0.577 Sum_probs=392.5
Q ss_pred cccCCCCCceeeeeeecCCCcccccccccccCCCCcccccccCCCCCccchhhhccccccccCcccccccccCCCCCCCC
Q 005242 9 LCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQSPVDDT 88 (706)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (706)
||.+|....++.....--+.| ..++...---.+.+++.+.+.+.+....+...++...-...-..-.++.++.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f-------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF-------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred cccccCCCCcCchhhhhhhhh-------cccccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 677777655543332222222 3333333334566788888888888887777666543221112112334444
Q ss_pred CCCcCCCCCC---------------CchhhhhhcccCCCcccCCcccccCC-ccccccCchhhhccccCCcCHHHHHHHH
Q 005242 89 GISSSSSICP---------------APLCRQFWKAGNYEDRLGSKATLQNG-KNFLHVHPMFLHSNATSHKWAFGAIAEL 152 (706)
Q Consensus 89 ~~~~~~~~~~---------------~~~~~~fw~ag~~~~~~~~~~~~~~~-~~~~~v~p~fL~Snstsh~~pfsAIaEL 152 (706)
....-++.|| +..||||||||+|..+..+......| ..||++||+|||+|+|+|+|.++|++||
T Consensus 75 vvvP~~t~~~~~~~~~~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeL 154 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVTEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAEL 154 (775)
T ss_pred ceecccccccccccccccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhh
Confidence 4444444443 45799999999999998877777555 7999999999999999999999999999
Q ss_pred HHhhhhHHhcCCceEEEEEEeCCCCC-cCeEEEE-----ECCCCCCHHHHHHhhhccccccCC-CCccCccccchhhHHh
Q 005242 153 LDNAIDEIQNGAAFVIVDKISNPRDG-TPALLIQ-----DDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKTSSM 225 (706)
Q Consensus 153 VDNAiDA~~~gAt~V~I~i~~n~~~g-~~~L~I~-----DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKsAs~ 225 (706)
+|||+|.+.++++++.|+.+....+. ...++|. |||+||.++-+..||.+|++.|.. ...+|+||+|||++.|
T Consensus 155 ldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~ 234 (775)
T KOG1845|consen 155 LDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTM 234 (775)
T ss_pred ccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchh
Confidence 99999999999999988776544344 5666666 779999999999999999999865 7889999999999999
Q ss_pred hcCCeEEEEEeec--CCcceeEEeeccchhhhcccCCCceeeee----eeeeecCCCCeeeeecCcchhhhhhhh-----
Q 005242 226 RLGADVIVFSRHL--NDRTLTQSIGLLSYTFLTRTGHDRIVVPM----VDYELNTSTGTVNALHGRDHFTLNLSL----- 294 (706)
Q Consensus 226 ~LG~~v~V~SK~~--~~~~~t~svglLS~tfl~~~g~d~viVP~----~~~e~~~~~Gt~v~~~~~~~~~~~l~~----- 294 (706)
++|++++|++|.. .+...|+++|+||++||+.++.++++||| .+++....-+..+...+..+|..|+.+
T Consensus 235 rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~ 314 (775)
T KOG1845|consen 235 RLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTER 314 (775)
T ss_pred hhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHH
Confidence 9999999999942 23335899999999999999999999999 666654332222333456678888888
Q ss_pred hhccCCCCCHHHHHHH---------------hccccCCceEEEEEec--cccCCCceeecCCCCcccccccCCccccCCC
Q 005242 295 LLQWSPYSSETELLKQ---------------FDDIGHHGTKIIIYNL--WFSDGGNMELDFDSDPEDIRIAGDVINKFDP 357 (706)
Q Consensus 295 IlkySPf~se~eLl~q---------------f~~I~~hGT~III~nL--w~~~~G~~ELdF~td~~DI~I~g~~~~~~~~ 357 (706)
+++|+||.++.+++.| ++.+..+||.||+|++ |.+..|.+++||..+.++|.
T Consensus 315 ~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~----------- 383 (775)
T KOG1845|consen 315 FLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIP----------- 383 (775)
T ss_pred HhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCccccc-----------
Confidence 9999999999999988 8888999999999999 99999999999999888873
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHhhccCCCceEEEEcCeEecccccccccCcchhhhccCCCcccc-c---ceEEEEe
Q 005242 358 GAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCL-E---GTVITTI 433 (706)
Q Consensus 358 ~~~~~~~~~HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk~V~~~~i~~~L~~~e~~~YkP~~~~~v-~---~~V~~t~ 433 (706)
| .+.++++.|.+|||++.+++|++++.|+.+.|+.+....+..+..+|.|+....- . .......
T Consensus 384 --~----------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~ 451 (775)
T KOG1845|consen 384 --W----------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKP 451 (775)
T ss_pred --c----------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCC
Confidence 1 3567788999999999999999999999999999999999988889998874221 1 1224567
Q ss_pred eeccCCC-ccccceEEEEEeCcccc----hhhhhhcccccCccceeEEEEEecCccCCCCCcchhcccHHHHHHHHHHHH
Q 005242 434 GFLKDAP-HISIHGFNVYHKNRLIL----PFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKE 508 (706)
Q Consensus 434 Gflkea~-~~~~qGf~VY~nnRLI~----~~wrVg~q~~~~s~grGVIGVleanflePthnKQdFe~t~~y~~Le~~L~e 508 (706)
||.+.++ +++.++|+|||.+|||. |+|+.++. .++.++++++++.+||.+++|++|||+++..-.+++.++.+
T Consensus 452 ~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~--~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~ 529 (775)
T KOG1845|consen 452 GFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNA--TGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQ 529 (775)
T ss_pred CcccccCCCCCccCCccccCCcchhhcccceeeecCC--CccccccccceecccccccCCCccccccccccccchhhhhh
Confidence 8888765 46788999999999999 99999997 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCccccC
Q 005242 509 MTWEYWDYHCELIGYQRKK 527 (706)
Q Consensus 509 ~l~~YW~~~~~~~Gy~~~~ 527 (706)
+++.||...|++++|....
T Consensus 530 ~~~~~~~~~~~~i~~~~~q 548 (775)
T KOG1845|consen 530 SLNTYEEKKCLRIDEAGRQ 548 (775)
T ss_pred cccccccccccccCccchh
Confidence 9999999999999997554
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.6e-24 Score=249.21 Aligned_cols=327 Identities=22% Similarity=0.277 Sum_probs=245.8
Q ss_pred eEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCC
Q 005242 181 ALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGH 260 (706)
Q Consensus 181 ~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~ 260 (706)
++++.|||.||+++++..+..|+. ....+|.||+|+|+++|++|++++++|+... +++++++|++|++....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~----~~s~~~~sqt~~e~~~~ 72 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV----GLYGIGDYGNGLKSGSMRIGKDFILFTKKES----TMSCLFLSQTFHESEAD 72 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc----cccccccccCcccccccccCcccceeecccc----ccceeeeeccccccccc
Confidence 478999999999999999998843 3467999999999999999999999999865 57899999999999989
Q ss_pred CceeeeeeeeeecCCCCeeeeecCcchhhhhhhhhhccCCCCCHHHHHHHhccc-cCCc-eEEEEEeccccCCCceeecC
Q 005242 261 DRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDI-GHHG-TKIIIYNLWFSDGGNMELDF 338 (706)
Q Consensus 261 d~viVP~~~~e~~~~~Gt~v~~~~~~~~~~~l~~IlkySPf~se~eLl~qf~~I-~~hG-T~III~nLw~~~~G~~ELdF 338 (706)
+.++||+++|..... . ++ .+.|..++++|+.+|+|.+++.++.+++++ +..| |.+||+|+.+...|.++++|
T Consensus 73 ~~vvvP~~t~~~~~~--~-~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTR--E-IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ccceecccccccccc--c-cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 999999999975432 1 11 267888999999999999999999999998 6666 89999999998999999999
Q ss_pred CCCcccccccCCccccCCCchhhhhhhhhhhhhhhHHHHHHHHHhhccCCCceEEEEcCeEeccccccccc--Ccchhhh
Q 005242 339 DSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDL--KYPEFIL 416 (706)
Q Consensus 339 ~td~~DI~I~g~~~~~~~~~~~~~~~~~HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk~V~~~~i~~~L--~~~e~~~ 416 (706)
..++.||++.++..++.. + +.|+.++|+. |.|.|++++..|++..++.++ +.++.+.
T Consensus 147 a~~a~aeLldnalDEi~~----------------~---~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~ 205 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITN----------------G---ATFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPEVIR 205 (775)
T ss_pred ccChhhhhcccccccccc----------------c---cceEEeeeec--ccccccceeEEeeccceeccccccCHHHHH
Confidence 999999999887554432 1 2347899999 899999999999987655443 1111110
Q ss_pred ------ccCC-C--------c---cc----ccce--------------EEEEeeeccC--CCccccceEEEEEeCcccch
Q 005242 417 ------YRPQ-S--------A---GC----LEGT--------------VITTIGFLKD--APHISIHGFNVYHKNRLILP 458 (706)
Q Consensus 417 ------YkP~-~--------~---~~----v~~~--------------V~~t~Gflke--a~~~~~qGf~VY~nnRLI~~ 458 (706)
|.-. . . .+ ..+. ..-.+|++.- -..+. +|.+||-+ |||++
T Consensus 206 ~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~-~~d~iv~~-~~i~~ 283 (775)
T KOG1845|consen 206 KCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTG-KRDFIVPM-RLIKM 283 (775)
T ss_pred HHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecccc-CCceeEec-chhhh
Confidence 1000 0 0 00 0000 0122333321 01233 88889988 99999
Q ss_pred hhhhhcccccC-ccceeEEEEEecCccCCCCCcchhcccHHHHHHHHHHHHHHHHHHHHHhhhhCccccCCCCCCCCCCc
Q 005242 459 FWQVVSYSYRD-SRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLA 537 (706)
Q Consensus 459 ~wrVg~q~~~~-s~grGVIGVleanflePthnKQdFe~t~~y~~Le~~L~e~l~~YW~~~~~~~Gy~~~~~~~~~~~~~~ 537 (706)
+.+++.++... ..+.++.|.+++.. -+=++|.+-..|..++..|.+....||... ..|||+.+.+. .++..
T Consensus 284 ~~e~~~~~~~~i~~~s~~~~~~n~~i----~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~-~ef~~~~~~~~---~~g~~ 355 (775)
T KOG1845|consen 284 DYEKSDQLWQGILYKSGVDWAVNLEI----EVTERFLKWSPYSHLLDLLGQNSVQYSKDF-PEFGHQFNIMN---KPGTD 355 (775)
T ss_pred hhhcccccccceeeccccccceeeee----HHHHHHhhcCccccHHHHhhhhhhhhcccc-chhcchhhhcc---CCCce
Confidence 99888876443 34558888887643 222388888999999999999999999987 99999998877 34555
Q ss_pred CCCCCCCCCCCCCcc
Q 005242 538 SSYSMPRSGIHQPVV 552 (706)
Q Consensus 538 ~~~~~~~~~~~~p~~ 552 (706)
...|..++++..|.+
T Consensus 356 ~I~Y~~~~~~~~~g~ 370 (775)
T KOG1845|consen 356 VIIYNLRRWKGDEGI 370 (775)
T ss_pred eeeechhhhcccccc
Confidence 566666555444433
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.72 E-value=4.2e-16 Score=179.68 Aligned_cols=95 Identities=26% Similarity=0.352 Sum_probs=73.5
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
+.++..+|+|||.||+||+.+ ++....|.|..+. +...|.|.|||+||+.+++..++ ++|+|.+
T Consensus 24 Ys~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg~ 101 (613)
T PRK05218 24 YSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGIGMTREEVIENLGTIAKSGT 101 (613)
T ss_pred cCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCCCCCHHHHHHHHHhhccccc
Confidence 345778899999999999753 2334455555432 34569999999999999999877 8888742
Q ss_pred ------------CCCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 208 ------------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 208 ------------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.....||+||+||++ +|.++++|+|.||+.+
T Consensus 102 ~~f~~k~~~~~~~~~~~iG~fGiGf~S-~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 102 KEFLEKLKGDQKKDSQLIGQFGVGFYS-AFMVADKVTVITRSAG 144 (613)
T ss_pred hhHHHHhhcccccccccccccCcCchh-hhhccCEEEEEEcCCC
Confidence 134678999999986 5679999999999865
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=1e-17 Score=158.13 Aligned_cols=94 Identities=32% Similarity=0.517 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccC---CCCccCccccch
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKK---SKSVIGQYGNGF 220 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~---~~~~IGrfG~Gf 220 (706)
.+..||+|||+||+|| .|+.|.|.+.... ++...|.|.|||.||+.++|..++++|.+.++ ....+|+||+|+
T Consensus 2 ~~~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 2 SPEDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp SCTHHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred cHHHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 4578999999999999 6778988888653 46789999999999999999999999999886 467899999999
Q ss_pred hhHHhhcCCeEEEEEeecCCc
Q 005242 221 KTSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 221 KsAs~~LG~~v~V~SK~~~~~ 241 (706)
|.|.+.+|+.+.|.|++.+..
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~ 98 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGES 98 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSS
T ss_pred HHHHHHhcCEEEEEEEECCCC
Confidence 999999999999999998754
No 5
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.63 E-value=1.2e-14 Score=168.03 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=79.7
Q ss_pred cCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc
Q 005242 130 VHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK 207 (706)
Q Consensus 130 v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K 207 (706)
+++.-.+..++. -..|.++|.||||||+|| ||+.|.|.+.. +|...|.|.|||.||+++++..++...+++|
T Consensus 6 L~~~v~~~IaAgevI~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 6 LPPQLANQIAAGEVVERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CCHHHHHHhcCcCcccCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 445555555544 389999999999999998 99999999863 4677999999999999999999885444444
Q ss_pred -CC------CCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 208 -KS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 208 -~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
.. ..+.|..|.||.+. ....+++|.||+.++
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI--~~vs~l~i~s~~~~~ 117 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSI--ASVSRLTLTSRTADA 117 (617)
T ss_pred CCChhHhhccccCCcchhHHHhh--hhceEEEEEEecCCC
Confidence 22 25679999998543 445689999998753
No 6
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.6e-14 Score=164.15 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhhHHhcC-------------CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC--
Q 005242 145 AFGAIAELLDNAIDEIQNG-------------AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK-- 208 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~g-------------At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~-- 208 (706)
..-.|+|||.||.||+.+- ...+.|.+..+ ..+.+|+|.|||+||+.+|+...+ +++.|..+
T Consensus 28 KeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~D--k~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F 105 (623)
T COG0326 28 KEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFD--KDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEF 105 (623)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEc--ccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHH
Confidence 3345999999999998652 12345666654 457899999999999999999988 88877641
Q ss_pred ---------CCCccCccccchhhHHhhcCCeEEEEEeecCCcc
Q 005242 209 ---------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRT 242 (706)
Q Consensus 209 ---------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~ 242 (706)
+...|||||+||++|+| ++.+|+|.||+.+...
T Consensus 106 ~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~ 147 (623)
T COG0326 106 LESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDE 147 (623)
T ss_pred HHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCc
Confidence 34569999999998865 9999999999988554
No 7
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.60 E-value=2.5e-14 Score=165.56 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=149.6
Q ss_pred CchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 131 HPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 131 ~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
+|...+..+.. -..|.+||.|||+||+|| |||.|.|++. .+|...|.|.|||+||+++|+.-++ ++.+|+-
T Consensus 8 ~~~l~nqIAAGEVIerPaSVVKELVENSlDA---GAt~I~I~ve---~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 8 PPDLVNQIAAGEVIERPASVVKELVENSLDA---GATRIDIEVE---GGGLKLIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred CHHHHHHhcccceeecHHHHHHHHHhccccc---CCCEEEEEEc---cCCccEEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 34444555544 389999999999999998 9999999887 3688889999999999999999877 7888875
Q ss_pred CC------CCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCCCceeeeeeeeeecCCCCeeee
Q 005242 208 KS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNA 281 (706)
Q Consensus 208 ~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~d~viVP~~~~e~~~~~Gt~v~ 281 (706)
.+ ..++|..|-.| +|++-..+++|.||+.+... .|.+...+|.+.+
T Consensus 82 ~~~~DL~~I~TlGFRGEAL--~SIasVsrlti~Srt~~~~~--------------------------~~~~~~~g~~~~~ 133 (638)
T COG0323 82 ASLEDLFRIRTLGFRGEAL--ASIASVSRLTITSRTAEASE--------------------------GTQIYAEGGGMEV 133 (638)
T ss_pred CchhHHHHhhccCccHHHH--HHHHhhheeEEEeecCCcCc--------------------------eEEEEecCCcccc
Confidence 43 35668888876 67788999999999655321 1333222222110
Q ss_pred ecCcchhhhhhhhhhccCCCCCHHHHHHHhccccCCceEEEEEeccccCCCceeecCCCCcccccccCCccccCCCchhh
Q 005242 282 LHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFR 361 (706)
Q Consensus 282 ~~~~~~~~~~l~~IlkySPf~se~eLl~qf~~I~~hGT~III~nLw~~~~G~~ELdF~td~~DI~I~g~~~~~~~~~~~~ 361 (706)
.-.|- -..-||.|.|-||+.|.+.+.. |. +. .
T Consensus 134 ---------------~~~p~------------a~~~GTtVeV~dLF~NtPaRrK--fl--------ks-----------~ 165 (638)
T COG0323 134 ---------------TVKPA------------AHPVGTTVEVRDLFYNTPARRK--FL--------KS-----------E 165 (638)
T ss_pred ---------------cccCC------------CCCCCCEEEehHhhccChHHHH--hh--------cc-----------c
Confidence 00110 0245999999999999776555 32 11 0
Q ss_pred hhhhhhhhhh-hhHHHHHHHHHhhccCCCceEEEEcCe---EecccccccccCcchhhhccCCCcc---cc--cceEEEE
Q 005242 362 QLHEQHIANR-FHYSLRVYLSILYLRIPESFSIKLRGK---AVEHHNIANDLKYPEFILYRPQSAG---CL--EGTVITT 432 (706)
Q Consensus 362 ~~~~~HIa~~-~~~SLRaYlSILYL~~pp~fkIiLrGk---~V~~~~i~~~L~~~e~~~YkP~~~~---~v--~~~V~~t 432 (706)
...-.||... -+++|- +..-+|.++.+|+ .+....-..+...+-.-.|.+.+.. .+ +..-...
T Consensus 166 ~~E~~~i~~vv~r~ALa--------hp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~~~~l 237 (638)
T COG0323 166 KTEFGHITELINRYALA--------HPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHEDLRL 237 (638)
T ss_pred HHHHHHHHHHHHHHHhc--------CCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCCceEE
Confidence 1122444443 344542 2335899999999 4443332222211111123322210 01 1111236
Q ss_pred eeeccCC--CccccceEEEEEeCcccch
Q 005242 433 IGFLKDA--PHISIHGFNVYHKNRLILP 458 (706)
Q Consensus 433 ~Gflkea--~~~~~qGf~VY~nnRLI~~ 458 (706)
.||+..+ ...+..+.|+|.|||+|+-
T Consensus 238 ~G~v~~P~~~r~~~~~q~~fVNgR~V~~ 265 (638)
T COG0323 238 SGYVSLPEFTRASRDYQYLFVNGRPVRD 265 (638)
T ss_pred EEEecccccccCCccceEEEECCCEecc
Confidence 7888654 3456789999999999993
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=99.58 E-value=6.4e-14 Score=161.05 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=158.4
Q ss_pred CcCHHHHHHHHHHhhhhHHhcC-------CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccCC----
Q 005242 142 HKWAFGAIAELLDNAIDEIQNG-------AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKKS---- 209 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~g-------At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~~---- 209 (706)
..++..+|+|||.||+||+.+. ...|.|.+. + .+...|.|.|||.||+.+++.+.+ ++|.|.++.
T Consensus 21 Ys~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~ 97 (601)
T PRK14083 21 YSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLG 97 (601)
T ss_pred cCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhc
Confidence 4568899999999999997641 114555542 2 356889999999999999999876 899988743
Q ss_pred ---CCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCCCceeeeeeeeeecCCCCeeeeecCcc
Q 005242 210 ---KSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRD 286 (706)
Q Consensus 210 ---~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~d~viVP~~~~e~~~~~Gt~v~~~~~~ 286 (706)
...||+||+||+++ |.+|..|.|.||..++.. .+.|.... .|+. .++.
T Consensus 98 ~~~~~~IG~FGIGf~S~-F~vad~v~V~Tr~~~~~~------------------------~~~W~~~~-~g~y-~i~~-- 148 (601)
T PRK14083 98 FARNDFLGQFGIGLLSC-FLVADEIVVVSRSAKDGP------------------------AVEWRGKA-DGTY-SVRK-- 148 (601)
T ss_pred ccccccccccccceEEE-EEecCEEEEEeccCCCCc------------------------eEEEEECC-CCce-EEEe--
Confidence 25689999999876 679999999999864211 12354322 2322 1100
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHhccccCCceEEEEEeccccCCCceeecCCCCcccccccCCccccCCCchhhhhhhh
Q 005242 287 HFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQ 366 (706)
Q Consensus 287 ~~~~~l~~IlkySPf~se~eLl~qf~~I~~hGT~III~nLw~~~~G~~ELdF~td~~DI~I~g~~~~~~~~~~~~~~~~~ 366 (706)
+ + ..-..+||+|++.- ..+. .+ |.. . .
T Consensus 149 --------~----~-----------~~~~~~GT~I~L~l-~~d~---~~--~~~-~-----------------------~ 175 (601)
T PRK14083 149 --------L----E-----------TERAEPGTTVYLRP-RPDA---EE--WLE-R-----------------------E 175 (601)
T ss_pred --------C----C-----------CCCCCCCCEEEEEe-cCch---hh--hcc-H-----------------------H
Confidence 0 0 00126899998652 2210 01 110 0 0
Q ss_pred hhhhhhhHHHHHHHHHhhccCCCceEEEEcCe--EecccccccccCc---------chhhh-cc------CCCccc--cc
Q 005242 367 HIANRFHYSLRVYLSILYLRIPESFSIKLRGK--AVEHHNIANDLKY---------PEFIL-YR------PQSAGC--LE 426 (706)
Q Consensus 367 HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk--~V~~~~i~~~L~~---------~e~~~-Yk------P~~~~~--v~ 426 (706)
.++.-++.|.. ...|-|+++|. .|....+ -|+. .++.. |+ |-.... ++
T Consensus 176 ----~i~~li~~ys~------~i~~pI~l~~~~~~iN~~~~--lW~~~~~eit~~~eey~~Fyk~~~~~~Pl~~ih~~~e 243 (601)
T PRK14083 176 ----TVEELAKKYGS------LLPVPIRVEGEKGGVNETPP--PWTRDYPDPETRREALLAYGEELLGFTPLDVIPLDVP 243 (601)
T ss_pred ----HHHHHHHHHhc------cCCCCcccCCceeeecCCCC--CccCCccccCccHHHHHHHHHHhcCCCchheeeeccc
Confidence 11222333321 13466888884 4443322 1221 11111 21 111111 11
Q ss_pred ceEEEEee--e-ccC-CCccccceEEEEEeCcccchh-hhhhcccccCccceeEEEEEecCccCCCCCcchhcccHHHHH
Q 005242 427 GTVITTIG--F-LKD-APHISIHGFNVYHKNRLILPF-WQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQK 501 (706)
Q Consensus 427 ~~V~~t~G--f-lke-a~~~~~qGf~VY~nnRLI~~~-wrVg~q~~~~s~grGVIGVleanflePthnKQdFe~t~~y~~ 501 (706)
+.+ ..| | +.. ++.....|+-+|+|+=||.-- ..+-|. .-+=|=||||++-|+|+-+--.+..+..+++
T Consensus 244 ~~~--~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ 316 (601)
T PRK14083 244 SGG--LEGVAYVLPYAVSPAARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDELRPTASREALYEDDALAA 316 (601)
T ss_pred chh--heEEEEecCCCCCccccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCCCCccCHHHHccCHHHHH
Confidence 111 122 2 221 122246799999999999733 345543 3344668999999999999999999999999
Q ss_pred HHHHHHHHH
Q 005242 502 LETRLKEMT 510 (706)
Q Consensus 502 Le~~L~e~l 510 (706)
+.+.|.+.+
T Consensus 317 ir~~i~kki 325 (601)
T PRK14083 317 VREELGEAI 325 (601)
T ss_pred HHHHHHHHH
Confidence 988887766
No 9
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=3.6e-13 Score=143.49 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=76.5
Q ss_pred ccCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccc
Q 005242 129 HVHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSD 206 (706)
Q Consensus 129 ~v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~ 206 (706)
++++.-.+..++. ..++..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+.+++...+..++++
T Consensus 5 ~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 5 PLPPELVNKIAAGEVIERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred ECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 3455555555543 489999999999999998 88888888764 344569999999999999999988544444
Q ss_pred c-CC------CCccCccccchhhHHhhcCCeEEEEEee
Q 005242 207 K-KS------KSVIGQYGNGFKTSSMRLGADVIVFSRH 237 (706)
Q Consensus 207 K-~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~ 237 (706)
| .. ....|+.|.||. ++...++++|.||+
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred CCCChhHhhcccccCccchHHH--HHHhhCcEEEEEee
Confidence 4 22 356799999985 34455589999998
No 10
>PTZ00130 heat shock protein 90; Provisional
Probab=99.53 E-value=2.4e-13 Score=159.10 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=96.0
Q ss_pred cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc-
Q 005242 143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK- 207 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K- 207 (706)
..+..+|+|||.||.||+.+ +...+.|.|..+ ....+|.|.|||+||+.+++.+.| ++|+|..
T Consensus 87 S~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D--~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~ 164 (814)
T PTZ00130 87 TQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN--KEKNILSITDTGIGMTKEDLINNLGTIAKSGTS 164 (814)
T ss_pred CCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEEC--CCCCEEEEEECCCCCCHHHHHHHhhhhcccccH
Confidence 34556699999999999863 123456777654 346789999999999999999876 8888752
Q ss_pred ----------CCCCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEe--eccchhhhcccCCCceeeeeeeeeecCC
Q 005242 208 ----------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSI--GLLSYTFLTRTGHDRIVVPMVDYELNTS 275 (706)
Q Consensus 208 ----------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~sv--glLS~tfl~~~g~d~viVP~~~~e~~~~ 275 (706)
.....||+||+||.+++ -++.+|.|.||+.+... ..|. |--+|+.-+ ... .-...
T Consensus 165 ~F~~~l~~~~~~~~lIGQFGVGFYSaF-mVAdkV~V~Trs~~~~~-~~W~s~g~g~y~I~e----------~~~-~~~~~ 231 (814)
T PTZ00130 165 NFLEAISKSGGDMSLIGQFGVGFYSAF-LVADKVIVYTKNNNDEQ-YIWESTADAKFTIYK----------DPR-GSTLK 231 (814)
T ss_pred HHHHHhhccCCCcccccccccchhhee-eecCEEEEEEcCCCCce-EEEEECCCCcEEEEE----------CCC-CCCCC
Confidence 12457999999999775 59999999999866432 2222 222222111 100 00113
Q ss_pred CCeeeeecCc---chhhh---hhhhhhccCCCCC
Q 005242 276 TGTVNALHGR---DHFTL---NLSLLLQWSPYSS 303 (706)
Q Consensus 276 ~Gt~v~~~~~---~~~~~---~l~~IlkySPf~s 303 (706)
.||.++++-. .+|.. -.++|.+||.|-.
T Consensus 232 rGT~I~LhLked~~efl~~~~ik~likkYS~fI~ 265 (814)
T PTZ00130 232 RGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQ 265 (814)
T ss_pred CCcEEEEEECCchhhhccHHHHHHHHHHhhccCC
Confidence 6888887632 33432 3566788887653
No 11
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.47 E-value=1.2e-12 Score=152.56 Aligned_cols=144 Identities=21% Similarity=0.260 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc---
Q 005242 145 AFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK--- 207 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K--- 207 (706)
+...|+|||.||.||+.+ ....+.|.+..+ .....|.|.|||.||+.++|.+.| ++|.|..
T Consensus 26 ~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d--~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f 103 (701)
T PTZ00272 26 KEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPD--KENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAF 103 (701)
T ss_pred ccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEc--CCCCEEEEEECCCCCCHHHHHHHhhhhhhcchHHH
Confidence 345599999999999754 123456666654 345789999999999999999877 7887643
Q ss_pred -------CCCCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCCCceeeeeeeeeecCCCCeee
Q 005242 208 -------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVN 280 (706)
Q Consensus 208 -------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~d~viVP~~~~e~~~~~Gt~v 280 (706)
.+...||+||+||.+++ .++..|.|.||+.+... ..|..-.+-+|- +-+...++ ...||.+
T Consensus 104 ~~~~~~~~~~~~iGqFGvGfyS~F-mvad~V~V~Srs~~~~~-~~W~s~~~g~y~--------i~~~~~~~--~~~GT~I 171 (701)
T PTZ00272 104 MEALEAGGDMSMIGQFGVGFYSAY-LVADRVTVTSKNNSDES-YVWESSAGGTFT--------ITSTPESD--MKRGTRI 171 (701)
T ss_pred HHHhhccCCccccCCCCcceEEEE-EeccEEEEEEecCCCce-EEEEECCCCcEE--------EEeCCCCC--CCCCCEE
Confidence 12458999999998775 59999999999865432 223322222222 11221211 1357888
Q ss_pred eecCc---chhhh---hhhhhhccCCCC
Q 005242 281 ALHGR---DHFTL---NLSLLLQWSPYS 302 (706)
Q Consensus 281 ~~~~~---~~~~~---~l~~IlkySPf~ 302 (706)
+++-. .+|.. -.++|.+||.|-
T Consensus 172 ~L~Lk~d~~ef~~~~~i~~li~kYs~fi 199 (701)
T PTZ00272 172 TLHLKEDQMEYLEPRRLKELIKKHSEFI 199 (701)
T ss_pred EEEECCchHHhccHHHHHHHHHHhcccc
Confidence 77632 23332 255677888764
No 12
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-09 Score=123.14 Aligned_cols=145 Identities=30% Similarity=0.420 Sum_probs=97.4
Q ss_pred cCCcCHHHHHHHHHHhhhhHHhc-----------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 140 TSHKWAFGAIAELLDNAIDEIQN-----------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 140 tsh~~pfsAIaELVDNAiDA~~~-----------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
.+|+..| ++|||.||.||... ......|.+..| .....|+|.|.|+||+.+||.+++ +.+.|..
T Consensus 55 YS~kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~n--k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGt 130 (656)
T KOG0019|consen 55 YSHKEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIITN--KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGS 130 (656)
T ss_pred hcchHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEeccC--CCcceEEEEecCCCcCHHHHHhhhhhhhhccc
Confidence 3445666 99999999998753 123456677654 567899999999999999999998 6766642
Q ss_pred -----------CCCCccCccccchhhHHhhcCCeEEEEEeecCCcce-eEEeeccchhhhcccCCCceeeeeeeeeecCC
Q 005242 208 -----------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTL-TQSIGLLSYTFLTRTGHDRIVVPMVDYELNTS 275 (706)
Q Consensus 208 -----------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~-t~svglLS~tfl~~~g~d~viVP~~~~e~~~~ 275 (706)
.+.+.|||||+||++|. -.+.+|.|+||+.+++.+ +-+-+--|++.-+.++ ..
T Consensus 131 K~Fmealkea~ad~~~IGQFGvGFYSay-lVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~~~~~--------------~~ 195 (656)
T KOG0019|consen 131 KAFLEALKEAEAESNLIGQFGVGFYSAF-MVADRVVVTTRHPADEGLQWTSNGRGSYEIAEASG--------------LR 195 (656)
T ss_pred HHHHHHHHhcccchhhhhhcccchhhhh-hhhheeEEeeccCCCcceeeecCCCCceEEeeccC--------------cc
Confidence 13468999999999885 599999999999876532 2223444444333332 23
Q ss_pred CCeeeeecCcc---hhh---hhhhhhhccCCCCC
Q 005242 276 TGTVNALHGRD---HFT---LNLSLLLQWSPYSS 303 (706)
Q Consensus 276 ~Gt~v~~~~~~---~~~---~~l~~IlkySPf~s 303 (706)
+||.++++-++ +|. .-.+++.+||-|-+
T Consensus 196 rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~ 229 (656)
T KOG0019|consen 196 TGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVS 229 (656)
T ss_pred ccceEEeeehhhhhhhccHhHHHHHHhhcccccc
Confidence 57766665322 222 22345566666543
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.96 E-value=1e-08 Score=113.00 Aligned_cols=108 Identities=20% Similarity=0.312 Sum_probs=84.4
Q ss_pred hhhhccccC------CcCHHHHHHHHHHhhhhHHhc-C-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcc
Q 005242 133 MFLHSNATS------HKWAFGAIAELLDNAIDEIQN-G-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFG 203 (706)
Q Consensus 133 ~fL~Snsts------h~~pfsAIaELVDNAiDA~~~-g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG 203 (706)
.|+..|... -..+.++|.|||+||+||+.. | -..|.|.|... ..+...+.|.|||.|++++.+-++| ++-
T Consensus 19 EFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-~~d~y~v~veDNGpGIP~e~IPkvFGk~L 97 (538)
T COG1389 19 EFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-GKDHYKVIVEDNGPGIPEEQIPKVFGKML 97 (538)
T ss_pred HHHHhCHHhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-CCceEEEEEecCCCCCChhHhHHHHHHHh
Confidence 466655532 267889999999999999843 3 35566776653 2457889999999999999999998 666
Q ss_pred cccc--CCCCccCccccchhhHH----hhcCCeEEEEEeecCCc
Q 005242 204 FSDK--KSKSVIGQYGNGFKTSS----MRLGADVIVFSRHLNDR 241 (706)
Q Consensus 204 ~S~K--~~~~~IGrfG~GfKsAs----~~LG~~v~V~SK~~~~~ 241 (706)
+++| +..++.|++|+|.+.|. |..|+.+.|.|++.++.
T Consensus 98 ygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~ 141 (538)
T COG1389 98 YGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSG 141 (538)
T ss_pred ccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCc
Confidence 6666 45788899999987554 78999999999998754
No 14
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.88 E-value=3.6e-09 Score=118.94 Aligned_cols=292 Identities=18% Similarity=0.234 Sum_probs=166.2
Q ss_pred cCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-hhhccccc
Q 005242 130 VHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR-CMSFGFSD 206 (706)
Q Consensus 130 v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~-~m~fG~S~ 206 (706)
++....+..+.. ...|..||.|||.||+|| ++|.|.|.+. .||-..|.|.|||.||..+||.- |=+|.+|+
T Consensus 11 Lde~VVNRIAAGEVI~RP~NAlKEliENSLDA---~ST~I~V~vk---~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 11 LDEDVVNRIAAGEVIQRPVNALKELIENSLDA---NSTSIDVLVK---DGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred CcHHHHhHhhccchhhchHHHHHHHHhccccC---CCceEEEEEe---cCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 444555555544 478999999999999998 9999888775 46888899999999999999986 56999987
Q ss_pred cC---C---CCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCCCceeeeeeeeeecCCCCeee
Q 005242 207 KK---S---KSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVN 280 (706)
Q Consensus 207 K~---~---~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~d~viVP~~~~e~~~~~Gt~v 280 (706)
-. + -++-|..|-. .||++..++|+|.||..++.. .|+.....|.+.
T Consensus 85 L~kFEDL~~lsTyGFRGEA--LASiShVA~VtV~TK~~~~~c--------------------------ayrasY~DGkm~ 136 (694)
T KOG1979|consen 85 LTKFEDLFSLSTYGFRGEA--LASISHVAHVTVTTKTAEGKC--------------------------AYRASYRDGKMI 136 (694)
T ss_pred cchhHHHHhhhhcCccHHH--HhhhhheeEEEEEEeecCcee--------------------------eeEEEeeccccc
Confidence 53 2 2344555554 588999999999999987542 355444445431
Q ss_pred eecCcchhhhhhhhhhccCCCCCHHHHHHHhccccCCceEEEEEeccccCCCceeecCCCCcccccccCCccccCCCchh
Q 005242 281 ALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAF 360 (706)
Q Consensus 281 ~~~~~~~~~~~l~~IlkySPf~se~eLl~qf~~I~~hGT~III~nLw~~~~G~~ELdF~td~~DI~I~g~~~~~~~~~~~ 360 (706)
-.|-. .-|..||.|.|-||+.|..-+..- +.+ .
T Consensus 137 -----------------~~pKp----------cAgk~GT~I~vedLFYN~~~Rrka-l~~-------------------~ 169 (694)
T KOG1979|consen 137 -----------------ATPKP----------CAGKQGTIITVEDLFYNMPTRRKA-LRN-------------------H 169 (694)
T ss_pred -----------------cCCCC----------ccCCCceEEEehHhhccCHHHHHH-hcC-------------------c
Confidence 11210 126899999999999874321110 000 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhccCCCceEEEEcCeEecccccccccCc--chhhhccCCCcccc-------cceE--
Q 005242 361 RQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKY--PEFILYRPQSAGCL-------EGTV-- 429 (706)
Q Consensus 361 ~~~~~~HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk~V~~~~i~~~L~~--~e~~~YkP~~~~~v-------~~~V-- 429 (706)
.+.-++-+-...+|+ |=+-+ -.|...=.|..+..-...-+... .....|.+..+... ...+
T Consensus 170 ~EE~~ki~dlv~ryA------IHn~~--VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~~l~ 241 (694)
T KOG1979|consen 170 AEEYRKIMDLVGRYA------IHNPR--VSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSKLLK 241 (694)
T ss_pred HHHHHHHHHHHHHHh------eeCCC--cceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccCceeE
Confidence 000000011112333 22322 45666655655544332222221 11123443332111 1111
Q ss_pred EEEeeeccCCC-ccccceEEEEEeCcccc------hhhhhhccc--ccCccceeEEEEEecCc----cCCCCCcchhccc
Q 005242 430 ITTIGFLKDAP-HISIHGFNVYHKNRLIL------PFWQVVSYS--YRDSRGRGVVGVLEANF----IEPTHSKQDFERT 496 (706)
Q Consensus 430 ~~t~Gflkea~-~~~~qGf~VY~nnRLI~------~~wrVg~q~--~~~s~grGVIGVleanf----lePthnKQdFe~t 496 (706)
....||+..+. ..-..=+-+|-||||+. +-+.|...+ +++..+.+.-=.|+..- +-||-.---|-+.
T Consensus 242 f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~q 321 (694)
T KOG1979|consen 242 FSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQ 321 (694)
T ss_pred EeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEeecH
Confidence 12456775431 11234458999999998 334443332 35666777665666533 4566655557663
Q ss_pred -HHHHHHHHHHHHHH
Q 005242 497 -SLFQKLETRLKEMT 510 (706)
Q Consensus 497 -~~y~~Le~~L~e~l 510 (706)
+.-.++...+.+.|
T Consensus 322 EeIie~I~~~ie~~L 336 (694)
T KOG1979|consen 322 EEIIERICQQIEERL 336 (694)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444444444443
No 15
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.83 E-value=1.2e-08 Score=118.92 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=85.4
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR- 198 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~- 198 (706)
-.+..|||.-|. |+-| +....+...|.||||||+|+..+| |+.|.|.+..+ ..|.|.|||.||+.+....
T Consensus 16 L~~lE~VrkRP~mYiGs--~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V~DnGrGIP~~~~~~~ 88 (631)
T PRK05559 16 LEGLEPVRKRPGMYIGS--TDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSVRDNGRGIPVGIHPEE 88 (631)
T ss_pred ccchHHHhcCCCceeCC--CCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEEEEcCCCCCccccccc
Confidence 456899999987 4433 345788999999999999987665 89999988742 3899999999999998887
Q ss_pred -------hh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 199 -------CM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 199 -------~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+| .+..++|.+ ..+.|..|+|++++. .+...+.|.|++.+
T Consensus 89 ~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g 140 (631)
T PRK05559 89 GKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDG 140 (631)
T ss_pred CCcchheeeeeccccCccCCccccccCcccccchhhhh-hheeeEEEEEEeCC
Confidence 66 434444422 356799999997654 68899999999765
No 16
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8e-09 Score=114.13 Aligned_cols=95 Identities=27% Similarity=0.419 Sum_probs=71.6
Q ss_pred cCHHHHHHHHHHhhhhHHhcC-------------CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc-
Q 005242 143 KWAFGAIAELLDNAIDEIQNG-------------AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK- 207 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~g-------------At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K- 207 (706)
+.+| ++|||.||.||+.+- ...+.|.|..+ ..+..|.|.|.|.||+.++|.+.+ +++.|..
T Consensus 96 KeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~D--ke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs 171 (785)
T KOG0020|consen 96 KEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKAD--KEKKLLHITDTGIGMTREDLIKNLGTIAKSGTS 171 (785)
T ss_pred hHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeec--hhhCeeeEecccCCccHHHHHHhhhhhhcccHH
Confidence 4455 899999999997541 12345555543 457889999999999999999887 5554431
Q ss_pred ---------CC-----CCccCccccchhhHHhhcCCeEEEEEeecCCcc
Q 005242 208 ---------KS-----KSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRT 242 (706)
Q Consensus 208 ---------~~-----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~ 242 (706)
.. ...|||||+||++| |..+.+|.|.||++++..
T Consensus 172 ~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsA-fLVAD~vvVtsKhNdD~Q 219 (785)
T KOG0020|consen 172 EFLEKMQDSGDSEGLMNDLIGQFGVGFYSA-FLVADRVVVTSKHNDDSQ 219 (785)
T ss_pred HHHHHhhccccchhhHHHHHHhcchhhhhh-hhhcceEEEEeccCCccc
Confidence 01 25789999999987 569999999999988754
No 17
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.78 E-value=3.9e-08 Score=114.93 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=72.3
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCc--eEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC--CCCccCccc
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAA--FVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK--SKSVIGQYG 217 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt--~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~--~~~~IGrfG 217 (706)
.++..+|.|||+||+||...+.. .|.|.+... +....|.|.|||.||+++++.++| +|.+++|. .....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 45788999999999998433221 566666542 334579999999999999999999 68766652 235679999
Q ss_pred cchhhHH----hhcCCeEEEEEeecCC
Q 005242 218 NGFKTSS----MRLGADVIVFSRHLND 240 (706)
Q Consensus 218 ~GfKsAs----~~LG~~v~V~SK~~~~ 240 (706)
+|+.++. +..|..+.|.|+..++
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 9987555 3458889999998664
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.66 E-value=5.5e-07 Score=102.91 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=77.7
Q ss_pred hhhhccccC-C-----cCHHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCC-CCCcCeEEEEECCCCCCHHHHHHhh-hc
Q 005242 133 MFLHSNATS-H-----KWAFGAIAELLDNAIDEIQNGA--AFVIVDKISNP-RDGTPALLIQDDGGGMDPEAMRRCM-SF 202 (706)
Q Consensus 133 ~fL~Snsts-h-----~~pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~-~~g~~~L~I~DNG~GM~~eeL~~~m-~f 202 (706)
.|+..|... + ..+..+|.|||+||+||...+. ..|.|.+.... .++...|.|.|||.||+++++..+| .|
T Consensus 19 EfF~kn~~~~gf~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 19 EFFEKNKELLGFDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred HHHHhCccceeecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 477777654 2 3368899999999999964322 24666665321 2345779999999999999999998 56
Q ss_pred cccccC-C-CCccCccccchhhHH----hhcCCeEEEEEeecCCc
Q 005242 203 GFSDKK-S-KSVIGQYGNGFKTSS----MRLGADVIVFSRHLNDR 241 (706)
Q Consensus 203 G~S~K~-~-~~~IGrfG~GfKsAs----~~LG~~v~V~SK~~~~~ 241 (706)
.+++|. . ....|.+|+||..+. +..|..+.|.|+..++.
T Consensus 99 ~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~ 143 (535)
T PRK04184 99 LYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSK 143 (535)
T ss_pred hccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 555553 2 356799999997653 33466799999987653
No 19
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.65 E-value=1e-07 Score=111.26 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=83.1
Q ss_pred ccCCCcccCCcccccCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEE
Q 005242 108 AGNYEDRLGSKATLQNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQ 185 (706)
Q Consensus 108 ag~~~~~~~~~~~~~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~ 185 (706)
+.+|+.. .-..-.+..|||.-|. |+-|. ...-+...|.||||||+|...+| |+.|.|.+.. +| .|.|.
T Consensus 5 ~~~Y~~~---~i~~L~~lE~Vr~RPgMYiGs~--~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~g--~I~V~ 74 (638)
T PRK05644 5 AQEYDAS---QIQVLEGLEAVRKRPGMYIGST--GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---DG--SITVT 74 (638)
T ss_pred cCCCCHH---HCeEecchHHHhcCCCceECCC--ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---CC--cEEEE
Confidence 3456652 2223456789999876 55443 33455668999999999965558 9999998874 22 89999
Q ss_pred ECCCCCCHHHHH--------Hhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 186 DDGGGMDPEAMR--------RCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 186 DNG~GM~~eeL~--------~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
|||.||+.+.-. ..| .+..+.|.+ ..+.|+.|+|+++.. .+...++|.|++.+
T Consensus 75 DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g 140 (638)
T PRK05644 75 DNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDG 140 (638)
T ss_pred EeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhh-heeceEEEEEEeCC
Confidence 999999986222 223 222333322 346899999997654 68888999999765
No 20
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.62 E-value=7.9e-08 Score=110.31 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=74.2
Q ss_pred CchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-hhhcccccc
Q 005242 131 HPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR-CMSFGFSDK 207 (706)
Q Consensus 131 ~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~-~m~fG~S~K 207 (706)
.++-.|...++ ..++.+||.||||||+|| |||.|.|.+.. .|-..|.|.|||+|++..+..- ++.+-+|.-
T Consensus 5 ~~~tvhrI~S~qvI~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 5 PKDTVHRICSSQVITSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred ChhhhhccccCCeeccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 33444444444 378889999999999998 99998887763 4788999999999999988875 445555554
Q ss_pred CC------CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 208 KS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 208 ~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.+ ..+.|..|-.| ++.---.+|+|.|++..
T Consensus 79 ~~f~Dl~~l~T~GFRGEAL--SsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 79 VSFADLAVLFTLGFRGEAL--SSLCALGDVMISTRSHS 114 (672)
T ss_pred cchhhhhhhhhhhhHHHHH--HhhhhccceEEEEeecc
Confidence 32 35667777776 33334467899999864
No 21
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.56 E-value=4e-07 Score=106.69 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCccccccCchh-hhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH----
Q 005242 123 NGKNFLHVHPMF-LHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM---- 196 (706)
Q Consensus 123 ~~~~~~~v~p~f-L~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL---- 196 (706)
.+..|||.-|.+ +-|... .-+...|.||||||+|...+| |+.|.|.+.. +| .|.|.|||.||+.+.-
T Consensus 10 ~~lE~vr~RP~mYiGs~~~--~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGSTGE--TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred cchHHHhcCCCceeCCCCc--chHHhhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCC
Confidence 467888888874 644333 456678999999999965558 9999998873 22 4999999999998621
Q ss_pred ----HHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 197 ----RRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 197 ----~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
...| .+..+.|.+ ..+.|+.|+|+++.. .++..++|.|++.+
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g 133 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDG 133 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECC
Confidence 1122 122233322 356899999997654 68888999999765
No 22
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.52 E-value=6.4e-07 Score=80.10 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSS 224 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs 224 (706)
+..+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+++++..++..+++.+.+....+.+|+||..+.
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~ 82 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVK 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHH
Confidence 4568999999999986554 5677777754 467889999999999999999999766655545556677999986433
Q ss_pred ---hhcCCeEEEEEeecCC
Q 005242 225 ---MRLGADVIVFSRHLND 240 (706)
Q Consensus 225 ---~~LG~~v~V~SK~~~~ 240 (706)
-.++.++.+.+...++
T Consensus 83 ~~~~~~~g~l~~~~~~~~g 101 (111)
T PF02518_consen 83 QIAERHGGELTIESSEGGG 101 (111)
T ss_dssp HHHHHTTEEEEEEEETTTE
T ss_pred HHHHHCCCEEEEEEcCCCc
Confidence 4577788888876543
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.47 E-value=3.8e-07 Score=107.89 Aligned_cols=110 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHH-----
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPE----- 194 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~e----- 194 (706)
-.+..|||.-|. |+-+... ..-+...+.||||||+|...+| |+.|.|.+.. + ..|+|.|||.||+.+
T Consensus 15 L~gle~VRkRPgMYIGst~~-~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 15 LKGLDAVRKRPGMYIGDTDD-GTGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred ecccHHHhcCCCCeeCCCCC-CcchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCccccc
Confidence 457889999876 5654433 1345668999999999965568 8999998864 2 389999999999987
Q ss_pred -----HHHHhhhccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 195 -----AMRRCMSFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 195 -----eL~~~m~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
++.-. .+..+.|.+ .-+.|..|+|++.. -.+...+.|.|++.+
T Consensus 89 g~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~svv-NAlS~~l~v~v~r~g 140 (756)
T PRK14939 89 GVSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVSVV-NALSEWLELTIRRDG 140 (756)
T ss_pred CCchhhheee-eecccCCCCCCcccccCCccCccceEe-ehccCeEEEEEEeCC
Confidence 33322 222333321 23679999999755 468889999999765
No 24
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.44 E-value=1.5e-06 Score=101.24 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=74.8
Q ss_pred hhhhccccCC------cCHHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcc
Q 005242 133 MFLHSNATSH------KWAFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFG 203 (706)
Q Consensus 133 ~fL~Snstsh------~~pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG 203 (706)
.|+..|...- .++.+++.|||+||+||..... ..|.|.+... ..+...|.|.|||.||+++++..+| +|-
T Consensus 19 EFF~kNk~~lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-g~~~~~I~V~DNG~GIp~e~l~~iFerF~ 97 (659)
T PRK14867 19 EFFRKNKHMLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL-GSDHYKVAVEDNGPGIPPEFVPKVFGKML 97 (659)
T ss_pred HHHhhCCeeeechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCcEEEEEEEeeCeeCCHHHHhhhhcccc
Confidence 4666665431 2344789999999999964322 2677777642 1223469999999999999999999 555
Q ss_pred ccccCC--CCccCccccchhhHH----hhcCCeEEEEEeecCC
Q 005242 204 FSDKKS--KSVIGQYGNGFKTSS----MRLGADVIVFSRHLND 240 (706)
Q Consensus 204 ~S~K~~--~~~IGrfG~GfKsAs----~~LG~~v~V~SK~~~~ 240 (706)
+++|.. ....|..|+|+.++. +..|..+.|.|+..++
T Consensus 98 atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 98 AGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred ccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 555522 366799999997554 4457888999987554
No 25
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.41 E-value=9.1e-07 Score=100.16 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=76.1
Q ss_pred hhhhccccC------CcCHHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcc
Q 005242 133 MFLHSNATS------HKWAFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFG 203 (706)
Q Consensus 133 ~fL~Snsts------h~~pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG 203 (706)
.|+..|... ...+..++.|||+||+||..... ..|.|.+... .++...|.|.|||.||+++++..+| +|.
T Consensus 11 EFF~kN~~~~Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-g~~~~~I~V~DNG~GIp~edl~~iF~rf~ 89 (488)
T TIGR01052 11 EFFRKNKHMLGYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-GKDHYKVTVEDNGPGIPEEYIPKVFGKML 89 (488)
T ss_pred HHHHhCCccccccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCceEEEEEEECCCCCCHHHHHhhhhhcc
Confidence 466666543 35677899999999999964322 2566666532 1123479999999999999999998 566
Q ss_pred ccccC--CCCccCccccchhhHH----hhcCCeEEEEEeecCC
Q 005242 204 FSDKK--SKSVIGQYGNGFKTSS----MRLGADVIVFSRHLND 240 (706)
Q Consensus 204 ~S~K~--~~~~IGrfG~GfKsAs----~~LG~~v~V~SK~~~~ 240 (706)
+++|. .....|.+|+|+.++. +..|..+.|.|+..+.
T Consensus 90 ~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~ 132 (488)
T TIGR01052 90 AGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGE 132 (488)
T ss_pred ccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecCCc
Confidence 66663 3456799999997543 3345669999998753
No 26
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.31 E-value=1e-06 Score=102.80 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=81.2
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhc-CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHH----
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQN-GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEA---- 195 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~-gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee---- 195 (706)
-.|..+||.-|- |+-|.+ |...|.||||||+|...+ +|+.|.|.+.. ...|.|.|||.||+.+.
T Consensus 12 L~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~-----d~~I~V~DnGrGIp~~~h~~~ 81 (625)
T TIGR01055 12 LDGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ-----DQSIEVFDNGRGMPVDIHPKE 81 (625)
T ss_pred ecccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC-----CCeEEEEecCCccCccccccc
Confidence 456788888775 664433 456899999999996555 59999998863 26899999999999988
Q ss_pred ----HHHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 196 ----MRRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 196 ----L~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+.-+| ..-.++|.+ ..+.|..|+|+++.. .+...+.|.|++.+
T Consensus 82 g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g 133 (625)
T TIGR01055 82 GVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQG 133 (625)
T ss_pred CCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCeEEEEEEECC
Confidence 77777 444444422 256899999997654 68888999999765
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.22 E-value=2.5e-06 Score=98.02 Aligned_cols=88 Identities=24% Similarity=0.254 Sum_probs=66.9
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC------CCCccCc
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK------SKSVIGQ 215 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~------~~~~IGr 215 (706)
.++..++.|||-||+|| +|+.|.|.+.. ....+.|+|||.||..++|...- ++.+|.-. ...+-|.
T Consensus 20 ~sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGf 92 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGF 92 (1142)
T ss_pred HHHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceecccccccccccc
Confidence 56778999999999998 99999887754 35789999999999999999876 66666532 2344566
Q ss_pred cccchhhHHhhcCCeEEEEEeecC
Q 005242 216 YGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 216 fG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.|-.| |+++--..+.|.|+..+
T Consensus 93 RGeAL--asIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 93 RGEAL--ASISDMSSLVVISKKKN 114 (1142)
T ss_pred chhhh--hhhhhhhhhhhhhhhcC
Confidence 66655 55556667788888766
No 28
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.02 E-value=5.1e-06 Score=96.58 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH--------hhh-ccccccCC----CCcc
Q 005242 148 AIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR--------CMS-FGFSDKKS----KSVI 213 (706)
Q Consensus 148 AIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~--------~m~-fG~S~K~~----~~~I 213 (706)
.|.||||||+||..+| |+.|.|.+..+ | .|+|.|||.||+.+.... .|. +-++.|.+ ..+.
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~~---g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDKD---N--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeCC---C--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 4789999999996555 99999988742 3 899999999999644321 121 22233322 3478
Q ss_pred CccccchhhHHhhcCCeEEEEEeecC
Q 005242 214 GQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 214 GrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
|..|+|+++. -.+...++|.|+..+
T Consensus 80 G~~G~Gls~v-nalS~~l~v~~~~~g 104 (594)
T smart00433 80 GLHGVGASVV-NALSTEFEVEVARDG 104 (594)
T ss_pred CcccchHHHH-HHhcCceEEEEEeCC
Confidence 9999999755 468899999999875
No 29
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.99 E-value=2.1e-05 Score=89.31 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=73.2
Q ss_pred CcCHHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNG 219 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~G 219 (706)
.....+.+..|||||+||..+.. ..|.+.+.. .++...|.|.|||+||+++....++..|+|.|. -+..|+|
T Consensus 425 ~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~----~~~rGiG 498 (537)
T COG3290 425 PHDLVTILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN----TGGRGIG 498 (537)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC----CCCCchh
Confidence 36678899999999999987432 345555543 467788999999999999999999999999985 3456899
Q ss_pred hh---hHHhhcCCeEEEEEeecCC
Q 005242 220 FK---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 220 fK---sAs~~LG~~v~V~SK~~~~ 240 (706)
++ ...-++|..+.|.+....+
T Consensus 499 L~Lvkq~V~~~~G~I~~~s~~~~G 522 (537)
T COG3290 499 LYLVKQLVERLGGSIEVESEKGQG 522 (537)
T ss_pred HHHHHHHHHHcCceEEEeeCCCCc
Confidence 75 4456899999999975543
No 30
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.98 E-value=7.6e-06 Score=94.07 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=76.7
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHH----
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEA---- 195 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee---- 195 (706)
-.|.++||.-|- |+-|... ..-+..-+.|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 14 L~GLEaVRkRPGMYIGst~~-~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~ 87 (635)
T COG0187 14 LEGLEAVRKRPGMYIGSTGD-GRGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKE 87 (635)
T ss_pred ccCcHHhhcCCCceeccCCC-CCcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCC
Confidence 456788888765 5554332 1333345789999999987776 7888887763 46899999999999765
Q ss_pred ----HHHhhh-ccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 196 ----MRRCMS-FGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 196 ----L~~~m~-fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+.-+|+ +-...|.+ ..+=|..|+|.+-. =.|...+.|.+++++
T Consensus 88 ~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVV-NALS~~l~v~v~r~g 139 (635)
T COG0187 88 KVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVV-NALSTWLEVEVKRDG 139 (635)
T ss_pred CCCceEEEEEeeccCcccCCCccEeecCCCccceEEE-ecccceEEEEEEECC
Confidence 333442 33333432 23448999997543 468899999998875
No 31
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.96 E-value=1.5e-05 Score=93.21 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=74.4
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHH--
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMR-- 197 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~-- 197 (706)
-.+..|||.-|. |+-|... .-+...+.|+||||+|...++ ++.|.|.+.. ...|.|.|||.||+.+--.
T Consensus 13 L~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~ 85 (637)
T TIGR01058 13 LEGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDG 85 (637)
T ss_pred ecccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcC
Confidence 456789998876 6655433 334456789999999965544 7888888763 2489999999999864211
Q ss_pred ------Hhhh-ccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 198 ------RCMS-FGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 198 ------~~m~-fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
-.|. +-.+.|.+ ...-|..|+|.+.. =.+...+.|.+++++
T Consensus 86 ~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svv-NAlS~~~~V~v~r~g 137 (637)
T TIGR01058 86 NISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVV-NALSSWLEVTVKRDG 137 (637)
T ss_pred CCccceeEEEEecccCcCCCCcccccCCccccccccc-ceeeceEEEEEEECC
Confidence 1121 22223322 24559999998754 468899999998765
No 32
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.76 E-value=0.00025 Score=59.38 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHH-
Q 005242 146 FGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSS- 224 (706)
Q Consensus 146 fsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs- 224 (706)
..++.|||+||+++.......|.|.+.. .++...|.|.|+|.||++..+...+..... .......+.+|+|++.+.
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~--~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER--DGDHLEIRVEDNGPGIPEEDLERIFERFSD-GSRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHHhhhhhc-CCCCCCCCccccCHHHHHH
Confidence 3589999999999843213456666554 345678899999999999999887742211 112334467899987443
Q ss_pred --hhcCCeEEEEEee
Q 005242 225 --MRLGADVIVFSRH 237 (706)
Q Consensus 225 --~~LG~~v~V~SK~ 237 (706)
.++|..+.+.+..
T Consensus 79 ~~~~~~g~~~~~~~~ 93 (103)
T cd00075 79 LVELHGGRIEVESEP 93 (103)
T ss_pred HHHHcCCEEEEEeCC
Confidence 3456788887765
No 33
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.65 E-value=0.00042 Score=58.98 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
+..+|.+|++||+++... ...|.|.+.. .++...|.|.|+|.||+.+.+...+..+++.+......+.+|+|++.+
T Consensus 6 l~~~~~~l~~n~~~~~~~-~~~v~i~~~~--~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE-GGRITVTLER--DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVK 82 (111)
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHH
Confidence 456899999999997332 2466666654 345678999999999999999998865554442334456789998643
Q ss_pred --HhhcCCeEEEEEe
Q 005242 224 --SMRLGADVIVFSR 236 (706)
Q Consensus 224 --s~~LG~~v~V~SK 236 (706)
...++.++.+.+.
T Consensus 83 ~~~~~~~g~~~~~~~ 97 (111)
T smart00387 83 KLVELHGGEISVESE 97 (111)
T ss_pred HHHHHcCCEEEEEec
Confidence 2346666666554
No 34
>PRK10604 sensor protein RstB; Provisional
Probab=97.62 E-value=0.00032 Score=77.69 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchh-
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFK- 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfK- 221 (706)
.+..++..||+||+.+ +...|.|.+... ++...|.|.|||.||+++++.+.+..++....+ ...-|-+|+|+.
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 3556899999999987 345677766653 345789999999999999999999544433222 222356799984
Q ss_pred --hHHhhcCCeEEEEEeecCC
Q 005242 222 --TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 --sAs~~LG~~v~V~SK~~~~ 240 (706)
...-.+|.++.|.+...++
T Consensus 394 vk~i~~~~gG~i~v~s~~~~G 414 (433)
T PRK10604 394 VHSIALAMGGSVNCDESELGG 414 (433)
T ss_pred HHHHHHHCCCEEEEEecCCCe
Confidence 3345789999998876544
No 35
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.59 E-value=0.00041 Score=75.75 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh--
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT-- 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs-- 222 (706)
+..+|..||+||+.+...+ ..|.|.+... .++...|.|.|||.||+++++.++|...++.+.+ ..-+-+|+||..
T Consensus 273 l~qvl~NLl~NAik~~~~~-~~I~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~-~~~~G~GLGL~i~~ 349 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEG-GTITLSMLHR-TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRD-EGTEGYGIGLSVCR 349 (380)
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEEEEEec-CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCC-CCCCcccccHHHHH
Confidence 4568999999999974332 3455554332 2345679999999999999999999655544432 223458999853
Q ss_pred -HHhhcCCeEEEEEeecCCc
Q 005242 223 -SSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 223 -As~~LG~~v~V~SK~~~~~ 241 (706)
..-.+|.++.|.|...++.
T Consensus 350 ~iv~~~gG~i~v~s~~~~Gt 369 (380)
T PRK09303 350 RIVRVHYGQIWVDSEPGQGS 369 (380)
T ss_pred HHHHHcCCEEEEEecCCCcc
Confidence 2347899999998876553
No 36
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.51 E-value=0.00038 Score=76.57 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKs 222 (706)
.+..++.+||+||+++...+ ..|.|.+..+ ++...|.|.|||.||+++++.+.+..+++.+.. ....|-.|+||..
T Consensus 317 ~l~~vl~NLl~NAik~~~~~-~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i 393 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEG-THITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAI 393 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHH
Confidence 45668999999999984322 4466665543 345789999999999999999999544433221 2223456888853
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
..-..|..+.|.|...++
T Consensus 394 vk~iv~~~gG~i~i~s~~~~G 414 (430)
T PRK11006 394 VKHALSHHDSRLEIESEVGKG 414 (430)
T ss_pred HHHHHHHCCCEEEEEecCCCc
Confidence 335689999998876544
No 37
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.50 E-value=0.0005 Score=75.05 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchhhH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKTS 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKsA 223 (706)
+..++.+||+||+.+ +...|.|.+... ++...|.|.|||.||+++++.+.+..+++.... ...-+.+|+|+..+
T Consensus 354 l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 354 LASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIV 428 (461)
T ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHH
Confidence 455899999999987 445677766543 345679999999999999999998544443211 22335679998632
Q ss_pred ---HhhcCCeEEEEEeecCC
Q 005242 224 ---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~~ 240 (706)
...+|..+.+.|...++
T Consensus 429 ~~~v~~~~G~l~~~s~~~~G 448 (461)
T PRK09470 429 ENAIQQHRGWVKAEDSPLGG 448 (461)
T ss_pred HHHHHHCCCEEEEEECCCCe
Confidence 34688899998876553
No 38
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.45 E-value=0.00083 Score=74.96 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHhhhhHHhc-CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQN-GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~-gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.+..++.+|++||+++... ....|.|.+... ++...|.|.|||.||+++++.+.|..+++.+.. -.|+||..
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~-----g~GlGL~i 505 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS-----NRGVGLYL 505 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC-----CCcCcHHH
Confidence 3667899999999998543 234566766643 456789999999999999999999777776532 24888753
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
-.-..|.++.|.|...++
T Consensus 506 v~~iv~~~~G~i~v~s~~~~G 526 (542)
T PRK11086 506 VKQSVENLGGSIAVESEPGVG 526 (542)
T ss_pred HHHHHHHcCCEEEEEeCCCCc
Confidence 234688999998875443
No 39
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.43 E-value=0.00077 Score=73.25 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhhhHHhcCC---ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 145 AFGAIAELLDNAIDEIQNGA---AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gA---t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
+..++.+|+.||+++...+. ..|.|.... .++...|.|.|||.||+++.+.+.|...++.|... .+--|+||.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~ 463 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLS 463 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHH
Confidence 44589999999999864442 234444333 35567899999999999999999996555554221 233578874
Q ss_pred h---HHhhcCCeEEEEEeecCC
Q 005242 222 T---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 s---As~~LG~~v~V~SK~~~~ 240 (706)
. -.-.+|.++.|.|...++
T Consensus 464 i~~~iv~~~gG~i~~~s~~~~G 485 (494)
T TIGR02938 464 VAQEIVADHGGIIDLDDDYSEG 485 (494)
T ss_pred HHHHHHHHcCCEEEEEECCCCC
Confidence 2 234689999998876554
No 40
>PRK10364 sensor protein ZraS; Provisional
Probab=97.41 E-value=0.00051 Score=76.06 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=66.7
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
..+..++..||+||+++... ...|.|.+... ++...|.|.|||.||+++.+.+.+..+++.|.. -.|+||..
T Consensus 347 ~~l~~il~NLl~NA~k~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~-----g~GlGL~i 418 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIGQ-HGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE-----GTGLGLAV 418 (457)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCCC-----CCcccHHH
Confidence 35677899999999998432 45677776653 345789999999999999999999777766532 25888753
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
..-.+|.++.|.+...++
T Consensus 419 v~~~v~~~gG~i~i~s~~~~G 439 (457)
T PRK10364 419 VHNIVEQHGGTIQVASQEGKG 439 (457)
T ss_pred HHHHHHHCCCEEEEEeCCCCc
Confidence 234688999988876543
No 41
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.39 E-value=0.00093 Score=83.73 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHhhhhHHhc--CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHH--------Hhh-hccccccCC---
Q 005242 144 WAFGAIAELLDNAIDEIQN--GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMR--------RCM-SFGFSDKKS--- 209 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~--gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~--------~~m-~fG~S~K~~--- 209 (706)
-+.--|-|+||||+|...+ .++.|.|.|... ...|+|.|||.||+.+--. -+| .+-++.+.+
T Consensus 77 GL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~----~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~ 152 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQRDPKMDSLRVVIDVE----QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNE 152 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcC----CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCc
Confidence 3446789999999997522 267888887632 3589999999999875221 112 122344433
Q ss_pred -CCccCccccchhhHHhhcCCeEEEEEee
Q 005242 210 -KSVIGQYGNGFKTSSMRLGADVIVFSRH 237 (706)
Q Consensus 210 -~~~IGrfG~GfKsAs~~LG~~v~V~SK~ 237 (706)
..+-|+.|+|.+.+- .+...+.|.++.
T Consensus 153 yKvSGGlhGVGasvvN-aLS~~f~Vev~D 180 (1465)
T PLN03237 153 KKTTGGRNGYGAKLTN-IFSTEFVIETAD 180 (1465)
T ss_pred ceeeccccccCccccc-cccCeeEEEEEE
Confidence 245699999987654 688999999974
No 42
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.39 E-value=0.00091 Score=72.87 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
++..++.+||+||+.+ +...|.|....+ ++...|.|.|||.||+++++.+.+..++........ +-+|+|+..+
T Consensus 331 ~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~-~g~GlGL~iv 404 (435)
T PRK09467 331 AIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGS-SGTGLGLAIV 404 (435)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCCC-CCeehhHHHH
Confidence 4456899999999987 456677766543 345679999999999999999999655543222122 4578887522
Q ss_pred ---HhhcCCeEEEEEeecCC
Q 005242 224 ---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~~ 240 (706)
.-..|.++.+.+...++
T Consensus 405 ~~i~~~~~g~l~i~~~~~~G 424 (435)
T PRK09467 405 KRIVDQHNGKVELGNSEEGG 424 (435)
T ss_pred HHHHHHCCCEEEEEECCCCc
Confidence 23578888888776543
No 43
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.38 E-value=0.00076 Score=73.29 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKs 222 (706)
.+..++.+||+||+++... ...|.|.+..+ ++...|.|.|||.||+++.+.+.+.-+++.+.. ...-+-.|+|+..
T Consensus 353 ~l~~~~~nll~Nai~~~~~-~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i 429 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPD-GGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAI 429 (457)
T ss_pred HHHHHHHHHHHHHHHcCCC-CceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHH
Confidence 3566899999999997321 24677777653 455689999999999999999999545544322 1223447888753
Q ss_pred H---HhhcCCeEEEEEeecC
Q 005242 223 S---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~ 239 (706)
+ .-++|..+.+.+ ..+
T Consensus 430 ~~~~~~~~~G~~~~~~-~~~ 448 (457)
T TIGR01386 430 VRSIMEAHGGRASAES-PDG 448 (457)
T ss_pred HHHHHHHCCCEEEEEe-CCC
Confidence 3 246888999888 443
No 44
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.37 E-value=0.001 Score=66.99 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=63.4
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.|+..+|..||+||++|.. ...|.|.+... ++...|.|.|||.||+++.+...+..+++.+.... -.|+||..
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~--~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i 299 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQD--DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAI 299 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEec--CCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHH
Confidence 5666799999999999843 46777777653 23578999999999999999999977777664432 34667642
Q ss_pred H---HhhcCCeEEEEEee
Q 005242 223 S---SMRLGADVIVFSRH 237 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~ 237 (706)
+ .-..|..+.+.|..
T Consensus 300 ~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 300 VKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 2 23556667777765
No 45
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.37 E-value=0.00074 Score=74.13 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc-CCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK-KSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K-~~~~~IGrfG~GfKs 222 (706)
.+..++.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++++.+.+.-.++.+ ......|..|+||..
T Consensus 352 ~l~qvl~nll~NAi~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDS-GGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 3556899999999997322 23566766543 4557789999999999999999984444332 222334567999753
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
...++|..+.+.+...++
T Consensus 429 v~~i~~~~~G~l~~~s~~~~G 449 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPFGG 449 (466)
T ss_pred HHHHHHHcCCEEEEEECCCCe
Confidence 235688999998876554
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.36 E-value=0.001 Score=74.98 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHhhhhHHhc---CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccch
Q 005242 144 WAFGAIAELLDNAIDEIQN---GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGF 220 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~---gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~Gf 220 (706)
.+...+.+|++||+++... +...|.|.+... ++...|.|.|||.||+++++.+.|..|++.+.. ..|..|+|+
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~--~~~g~GlGL 507 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD--EPGEHGIGL 507 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC--CCCCceeCH
Confidence 3556899999999998532 345676666542 455779999999999999999999878776532 224458898
Q ss_pred hhH---HhhcCCeEEEEEeecCC
Q 005242 221 KTS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 221 KsA---s~~LG~~v~V~SK~~~~ 240 (706)
..+ .-..|..+.|.|....+
T Consensus 508 ~ivk~iv~~~~G~i~v~s~~~~G 530 (545)
T PRK15053 508 YLIASYVTRCGGVITLEDNDPCG 530 (545)
T ss_pred HHHHHHHHHcCCEEEEEECCCCe
Confidence 533 34688889998876543
No 47
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.34 E-value=0.00093 Score=68.69 Aligned_cols=94 Identities=22% Similarity=0.204 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKs 222 (706)
.+..++.+||.||+++... ...|.|.+... ++...|.|.|||.||+++.+.+++..+++.+.. ...-+-.|+|+..
T Consensus 229 ~l~~vl~nll~Nai~~~~~-~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~ 305 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPE-GGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAI 305 (333)
T ss_pred HHHHHHHHHHHHhheeCCC-CCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHH
Confidence 4566899999999997322 34566655542 345779999999999999999999655433211 1122335888853
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
..-.+|.++.+.|....+
T Consensus 306 ~~~~~~~~gG~i~~~s~~~~G 326 (333)
T TIGR02966 306 VKHVLSRHHARLEIESELGKG 326 (333)
T ss_pred HHHHHHHCCCEEEEEecCCCC
Confidence 224589999999876544
No 48
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.29 E-value=0.00081 Score=71.69 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=65.0
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.|+..++..||+||+.+.. ....|.|.+..+ ++...|.|.|||.||+++++.+.+..++.... .-+-.|+|+..
T Consensus 246 ~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i 319 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSI 319 (356)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHH
Confidence 4667799999999998732 235577766543 45578999999999999999999865543221 12446888753
Q ss_pred H---HhhcCCeEEEEEeec
Q 005242 223 S---SMRLGADVIVFSRHL 238 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~ 238 (706)
+ .-.+|..+.+.|...
T Consensus 320 ~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 320 VSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 2 346889999998865
No 49
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.25 E-value=0.0011 Score=72.19 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=66.6
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.++..++.+||.||+.+. .....|.|.+... ++...|.|.|||.||+++++.+.+..+++.+.....-+..|+|+..
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i 443 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAF 443 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHH
Confidence 457788999999999862 2345677777653 4567899999999999999999996555443212222345888763
Q ss_pred H---HhhcCCeEEEEEeecC
Q 005242 223 S---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~ 239 (706)
+ ...+|..+.+.|...+
T Consensus 444 ~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 444 VREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred HHHHHHHCCCEEEEEEcCCC
Confidence 2 2467888999887644
No 50
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.20 E-value=0.0016 Score=72.39 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh--
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT-- 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs-- 222 (706)
+..++.+||+||+.+... ...|.|.+.... ++...|.|.|||.||+++.+...+..+++.+.. ..|+|+..
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~-----g~glGL~~~~ 573 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK-----GTGLGLALSQ 573 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC-----CCchhHHHHH
Confidence 566899999999997543 335666655432 222789999999999999999998766655433 24777642
Q ss_pred -HHhhcCCeEEEEEeecCC
Q 005242 223 -SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 -As~~LG~~v~V~SK~~~~ 240 (706)
-...+|.++.|.|....+
T Consensus 574 ~~~~~~~G~i~~~s~~~~G 592 (607)
T PRK11360 574 RIINAHGGDIEVESEPGVG 592 (607)
T ss_pred HHHHHcCCEEEEEEcCCCc
Confidence 234688999998876543
No 51
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.13 E-value=0.0013 Score=77.22 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHH-HHHhhhccccccCCCCccCccccchhhH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEA-MRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee-L~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
+..++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++. ..+.+..+++.+. +-.|+|+..+
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-----~G~GLGL~i~ 651 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-----AGMGIGVYEC 651 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-----CCcchhHHHH
Confidence 44589999999999843 234577776653 4567899999999999999 6677776666553 3458887533
Q ss_pred ---HhhcCCeEEEEEeecCC
Q 005242 224 ---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~~ 240 (706)
.-.+|.++.|.|...++
T Consensus 652 ~~iv~~~gG~i~v~s~~g~G 671 (679)
T TIGR02916 652 RQYVEEIGGRIEVESTPGQG 671 (679)
T ss_pred HHHHHHcCCEEEEEecCCCc
Confidence 34689999999876543
No 52
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.12 E-value=0.0029 Score=66.86 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCC----CCC----cCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCc
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNP----RDG----TPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQ 215 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~----~~g----~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGr 215 (706)
.+..++..||+||+++.......|.|...... .++ ...|.|.|||.||+++.+.+.|..+++.+.. -
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~-----g 311 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG-----G 311 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC-----C
Confidence 35678999999999985333444555432110 001 2368999999999999999988655555432 2
Q ss_pred cccchh---hHHhhcCCeEEEEEeec
Q 005242 216 YGNGFK---TSSMRLGADVIVFSRHL 238 (706)
Q Consensus 216 fG~GfK---sAs~~LG~~v~V~SK~~ 238 (706)
-|+||. ......|..+.|.|...
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~ 337 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPG 337 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCC
Confidence 478874 33457889999988654
No 53
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.08 E-value=0.0025 Score=76.67 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeC-------------CCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCC
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISN-------------PRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSK 210 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n-------------~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~ 210 (706)
.+..+|.+||+||+++... ...|.|.+... +.++...|.|.|||.||+++.+.+.|..+++.+.
T Consensus 560 ~L~qvl~NLl~NAik~~~~-~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~-- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDG-AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA-- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHccc-CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC--
Confidence 3556899999999997533 34566665542 1234567999999999999999999965555443
Q ss_pred CccCccccchhh---HHhhcCCeEEEEEeecCC
Q 005242 211 SVIGQYGNGFKT---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 211 ~~IGrfG~GfKs---As~~LG~~v~V~SK~~~~ 240 (706)
+-.|+||.. ..-.+|.++.|.|...++
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g~G 666 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVGRG 666 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCCCe
Confidence 556888742 335789999999886544
No 54
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.04 E-value=0.003 Score=71.65 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
+..++..||+||+++. ...+.|.+... ++...|.|.|||.||+++++.+.+..++...... +-.|+||..+
T Consensus 379 l~~vl~NLi~NAik~~---~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---~G~GLGL~Ivk 450 (485)
T PRK10815 379 FMEVMGNVLDNACKYC---LEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---PGQGLGLSVAR 450 (485)
T ss_pred HHHHHHHHHHHHHHhc---CCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---CCcchhHHHHH
Confidence 4568999999999973 33566665542 3456799999999999999999986554332111 2368998533
Q ss_pred --HhhcCCeEEEEEeecCC
Q 005242 224 --SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 --s~~LG~~v~V~SK~~~~ 240 (706)
.-.+|.++.|.|...++
T Consensus 451 ~iv~~~gG~i~v~s~~~~G 469 (485)
T PRK10815 451 EITEQYEGKISAGDSPLGG 469 (485)
T ss_pred HHHHHcCCEEEEEECCCCE
Confidence 24688999998876544
No 55
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.90 E-value=0.0039 Score=74.67 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCC-CcCeEEEEECCCCCCHHHHHHhhh-ccccccCCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRD-GTPALLIQDDGGGMDPEAMRRCMS-FGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~-g~~~L~I~DNG~GM~~eeL~~~m~-fG~S~K~~~~~IGrfG~GfK 221 (706)
++..+|..||+||+.+...|.-.|.|.......+ ....|.|.|||.||+++++.+.+. |-..........|-.|+||.
T Consensus 408 ~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~ 487 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLV 487 (919)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHH
Confidence 4567899999999997443322233333322111 134688999999999999999984 43222211222356788874
Q ss_pred ---hHHhhcCCeEEEEEeecCCc
Q 005242 222 ---TSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 222 ---sAs~~LG~~v~V~SK~~~~~ 241 (706)
...-.+|.++.|.|....+.
T Consensus 488 i~~~i~~~~gG~i~v~s~~~~Gt 510 (919)
T PRK11107 488 ITQKLVNEMGGDISFHSQPNRGS 510 (919)
T ss_pred HHHHHHHHhCCEEEEEecCCCCE
Confidence 23346899999999876554
No 56
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.85 E-value=0.0046 Score=74.13 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
++..+|..||+||+++...| .|.|.+... ++...|.|.|||.||+++++.+.+...+..+. ..|-.|+||..+
T Consensus 513 ~l~~il~NLl~NAik~~~~g--~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GLGL~i~ 585 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETG--GIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT---HSQGTGLGLTIA 585 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCC--CEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC---CCCCCchHHHHH
Confidence 45678999999999974333 466666543 45678999999999999999999954444332 224568887533
Q ss_pred ---HhhcCCeEEEEEeecCC
Q 005242 224 ---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~~ 240 (706)
.-.+|..+.|.|....+
T Consensus 586 ~~~~~~~gG~i~i~s~~~~G 605 (921)
T PRK15347 586 SSLAKMMGGELTLFSTPGVG 605 (921)
T ss_pred HHHHHHcCCEEEEEecCCCc
Confidence 24678899998876554
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.84 E-value=0.0055 Score=72.87 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc-CCCCccCccccchhh-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK-KSKSVIGQYGNGFKT- 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K-~~~~~IGrfG~GfKs- 222 (706)
+..+|..||+||+++... ...|.|.+..+ ++...|.|.|||.||+++.+.+.+..+++.+ .....-+..|+||..
T Consensus 598 L~~il~NLI~NAik~s~~-~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Iv 674 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPE-DGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIV 674 (703)
T ss_pred HHHHHHHHHHHHHHHCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHH
Confidence 445899999999997433 34466766543 4567799999999999999999996555443 222222357899853
Q ss_pred --HHhhcCCeEEEEEeec
Q 005242 223 --SSMRLGADVIVFSRHL 238 (706)
Q Consensus 223 --As~~LG~~v~V~SK~~ 238 (706)
.....|.++.+.+...
T Consensus 675 r~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 675 RLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 3356888999888754
No 58
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.84 E-value=0.0059 Score=72.50 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc--CCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK--KSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K--~~~~~IGrfG~GfK 221 (706)
.+..+|..||+||+++... ..|.|.+.... ++...|.|.|||.||+++++.+.|...++.+ ......+--|+||.
T Consensus 398 ~l~qvl~NLl~NAik~~~~--g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQ--GGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred HHHHHHHHHHHHHHHhCCC--CcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 4556899999999998532 34666655431 3457899999999999999999995444443 12222345678874
Q ss_pred h---HHhhcCCeEEEEEeecCC
Q 005242 222 T---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 s---As~~LG~~v~V~SK~~~~ 240 (706)
. -.-.+|.++.|.|....+
T Consensus 475 i~~~iv~~~gG~i~v~s~~g~G 496 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEEGKG 496 (779)
T ss_pred HHHHHHHHcCCEEEEEecCCCe
Confidence 2 224689999999987654
No 59
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.83 E-value=0.0065 Score=72.03 Aligned_cols=93 Identities=20% Similarity=0.371 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhhHHhc--------C---CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-----------------
Q 005242 147 GAIAELLDNAIDEIQN--------G---AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR----------------- 198 (706)
Q Consensus 147 sAIaELVDNAiDA~~~--------g---At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~----------------- 198 (706)
..|..||.||+|+... | ...|.|.... .++...|.|.|||.||+++.+..
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~--~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH--QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 3467899999997311 1 1245665554 24567799999999999987752
Q ss_pred ----hhhccccccCCCCccCccccchh---hHHhhcCCeEEEEEeecCCc
Q 005242 199 ----CMSFGFSDKKSKSVIGQYGNGFK---TSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 199 ----~m~fG~S~K~~~~~IGrfG~GfK---sAs~~LG~~v~V~SK~~~~~ 241 (706)
.|..|+|.+.....+.-.|+||. ...-.+|..+.|.|+...+.
T Consensus 466 ~~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt 515 (670)
T PRK10547 466 VGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGT 515 (670)
T ss_pred HHHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcE
Confidence 34567777654444555699984 44467999999999876543
No 60
>PRK10490 sensor protein KdpD; Provisional
Probab=96.83 E-value=0.004 Score=76.04 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh-
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT- 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs- 222 (706)
.+..++..||+||+.+... ...|.|..... ++...|.|.|||.||+++++.+.|...++.+... ..+-.|+||..
T Consensus 778 ~L~qVL~NLL~NAik~s~~-g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Iv 853 (895)
T PRK10490 778 LFERVLINLLENAVKYAGA-QAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAIC 853 (895)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHH
Confidence 4556899999999997432 34566666542 4567899999999999999999995544443221 22336888742
Q ss_pred --HHhhcCCeEEEEEeecCC
Q 005242 223 --SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 --As~~LG~~v~V~SK~~~~ 240 (706)
..-.+|.++.+.|...++
T Consensus 854 k~ive~hGG~I~v~s~~~~G 873 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEGG 873 (895)
T ss_pred HHHHHHcCCEEEEEECCCCe
Confidence 234689999999876554
No 61
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.82 E-value=0.0052 Score=75.06 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCC-CCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPR-DGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~-~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.+..+|..||.||+.+...| .|.|.+..... ++...|.|.|+|.||+++++.+.+...++.+.....-+--|+||..
T Consensus 565 ~L~QVL~NLL~NAik~t~~G--~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI 642 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYG--KITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFL 642 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCC--eEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHH
Confidence 34558999999999985433 45555543221 2446789999999999999999985444443222222235888742
Q ss_pred ---HHhhcCCeEEEEEeecCC
Q 005242 223 ---SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 ---As~~LG~~v~V~SK~~~~ 240 (706)
-.-.+|..+.|.|....+
T Consensus 643 ~k~Lve~~GG~I~v~S~~g~G 663 (894)
T PRK10618 643 CNQLCRKLGGHLTIKSREGLG 663 (894)
T ss_pred HHHHHHHcCCEEEEEECCCCc
Confidence 234689999999987654
No 62
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=96.81 E-value=0.0043 Score=71.62 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=64.5
Q ss_pred cCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 143 KWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
..+...+-.||.||+||+..- ...|+|.... .++...|.|.|||.|+.++-+.+.|...+++|..... -|+|+-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~G---LGLGLa 570 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKG---LGLGLA 570 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCC---cchhHH
Confidence 346678999999999998542 3456666654 4677899999999999999999999766666543331 144442
Q ss_pred ---hHHhhcCCeEEEEEeecCC
Q 005242 222 ---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 ---sAs~~LG~~v~V~SK~~~~ 240 (706)
...--+|..+.|-+-..++
T Consensus 571 IS~~i~~d~GGsL~v~n~~~~G 592 (603)
T COG4191 571 ISQNIARDLGGSLEVANHPEGG 592 (603)
T ss_pred HHHHHHHHhCCeEEeecCCCCc
Confidence 1113578888888554443
No 63
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.77 E-value=0.0068 Score=72.92 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
.+..++..||+||+.+.. ...|.|.+..+ ++...|.|.|||.||+++++.+.|...+.... ..|-.|+|+..+
T Consensus 561 ~l~qil~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GLGL~i~ 633 (914)
T PRK11466 561 RIRQVITNLLSNALRFTD--EGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG---KRGGTGLGLTIS 633 (914)
T ss_pred HHHHHHHHHHHHHHHhCC--CCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC---CCCCCcccHHHH
Confidence 345689999999999743 33566666543 34567999999999999999999954443221 124568887532
Q ss_pred ---HhhcCCeEEEEEeecCC
Q 005242 224 ---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~~ 240 (706)
.-.+|.++.|.|...++
T Consensus 634 ~~l~~~~gG~i~v~s~~~~G 653 (914)
T PRK11466 634 SRLAQAMGGELSATSTPEVG 653 (914)
T ss_pred HHHHHHcCCEEEEEecCCCC
Confidence 34689999999886654
No 64
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.72 E-value=0.0073 Score=72.97 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCc-CeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGT-PALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~-~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.+..+|..||+||+.+.. ...|.|.+...+ +. ..|.|.|+|.||+++++.+.|...++.+ .....|-.|+||..
T Consensus 579 ~l~~il~nLi~NAik~~~--~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i 653 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTD--RGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAI 653 (968)
T ss_pred HHHHHHHHHHHHHHhhCC--CCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHH
Confidence 455689999999999743 335667666542 33 6799999999999999999994333332 22223556888853
Q ss_pred H---HhhcCCeEEEEEeecCC
Q 005242 223 S---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~~ 240 (706)
+ .-.+|.++.|.|....+
T Consensus 654 ~~~l~~~~gG~i~~~s~~~~G 674 (968)
T TIGR02956 654 SQRLVEAMDGELGVESELGVG 674 (968)
T ss_pred HHHHHHHcCCEEEEEecCCCc
Confidence 2 35688999998876554
No 65
>PRK09835 sensor kinase CusS; Provisional
Probab=96.68 E-value=0.0057 Score=67.41 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhh-ccccccCCCCccCccccchh-
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMS-FGFSDKKSKSVIGQYGNGFK- 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~-fG~S~K~~~~~IGrfG~GfK- 221 (706)
.+..+|.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++++...+. |-..+......-+-.|+||.
T Consensus 375 ~l~~vl~nll~Na~~~~~~-~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPA-GEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 3566899999999997322 23566766543 3456799999999999999999984 43333221122245688884
Q ss_pred --hHHhhcCCeEEEEEee
Q 005242 222 --TSSMRLGADVIVFSRH 237 (706)
Q Consensus 222 --sAs~~LG~~v~V~SK~ 237 (706)
.-...+|.++.|.|..
T Consensus 452 ~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 3335688889888753
No 66
>PRK10337 sensor protein QseC; Provisional
Probab=96.65 E-value=0.008 Score=65.96 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh-
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT- 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs- 222 (706)
.+..++.+||+||+.+... ...|.|.+.. ..|.|.|||.||+++++.+.+.-++..+ ....+.+|+|+..
T Consensus 352 ~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~--~~~~~g~GlGL~iv 422 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPP--GQEATGSGLGLSIV 422 (449)
T ss_pred HHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCC--CCCCCccchHHHHH
Confidence 3455899999999997322 2345555542 2699999999999999999985443322 1123457999753
Q ss_pred --HHhhcCCeEEEEEeecC
Q 005242 223 --SSMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 --As~~LG~~v~V~SK~~~ 239 (706)
....+|.++.+.+...+
T Consensus 423 ~~i~~~~gg~l~~~s~~~~ 441 (449)
T PRK10337 423 RRIAKLHGMNVSFGNAPEG 441 (449)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 23467889998887554
No 67
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.57 E-value=0.011 Score=73.58 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEe-CCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKIS-NPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~-n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
.+..+|..||+||+++...+...+.+.... ........|.|.|||.||+++++.+.|...++.+... .-+-.|+||..
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i 906 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMI 906 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHH
Confidence 455689999999999854443233332221 1111224578999999999999999995444433221 12346888853
Q ss_pred H---HhhcCCeEEEEEeecCC
Q 005242 223 S---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~~ 240 (706)
+ .-.+|.++.|.|...++
T Consensus 907 ~~~iv~~~gG~i~v~s~~~~G 927 (1197)
T PRK09959 907 CKELIKNMQGDLSLESHPGIG 927 (1197)
T ss_pred HHHHHHHcCCEEEEEeCCCCc
Confidence 3 34689999999986544
No 68
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.55 E-value=0.00079 Score=80.93 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=77.7
Q ss_pred CCCcccCCcccccCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEEC
Q 005242 110 NYEDRLGSKATLQNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDD 187 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DN 187 (706)
+|++. .-..-.|..+||.-|- |+-+... .-+..-|.|+||||+|...+| ++.|.|.+.. ...|+|.||
T Consensus 99 ~Y~a~---~I~vLeGLEaVRkRPGMYIGst~~--~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~Dn 168 (903)
T PTZ00109 99 EYDAD---DIVVLEGLEAVRKRPGMYIGNTDE--KGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISDN 168 (903)
T ss_pred CCChH---hCeehhccHHHhcCCCceeCCCCC--CcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEeC
Confidence 37753 2233457788888876 5544322 333445789999999987776 7888888763 257999999
Q ss_pred CCCCCHHHHH--------Hhhh-------ccccc------------------cC------------------C--CCccC
Q 005242 188 GGGMDPEAMR--------RCMS-------FGFSD------------------KK------------------S--KSVIG 214 (706)
Q Consensus 188 G~GM~~eeL~--------~~m~-------fG~S~------------------K~------------------~--~~~IG 214 (706)
|.||+-+.-. -+|+ |+... ++ . ...-|
T Consensus 169 GRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGG 248 (903)
T PTZ00109 169 GRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSG 248 (903)
T ss_pred CccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCc
Confidence 9999874322 1121 22110 00 0 13569
Q ss_pred ccccchhhHHhhcCCeEEEEEeecC
Q 005242 215 QYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 215 rfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
..|+|.+.+ =.|...+.|.+++.+
T Consensus 249 LHGVG~SVV-NALS~~l~VeV~RdG 272 (903)
T PTZ00109 249 LHGVGLSVV-NALSSFLKVDVFKGG 272 (903)
T ss_pred CCCcceeee-eeccCeEEEEEEECC
Confidence 999998644 468999999998876
No 69
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.50 E-value=0.013 Score=71.96 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc-CCCCccCccccchhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK-KSKSVIGQYGNGFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K-~~~~~IGrfG~GfKs 222 (706)
.+..+|..||+||+.+...| .|.|.+... ++...|.|.|+|.||+++++.+.+...+... ......+-.|+||..
T Consensus 562 ~L~qvl~NLl~NAik~t~~G--~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I 637 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTDTG--CIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI 637 (924)
T ss_pred HHHHHHHHHHHHHHhhCCCC--cEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHH
Confidence 45568999999999984333 455555542 3456789999999999999999985433322 111222346888853
Q ss_pred H---HhhcCCeEEEEEeecCC
Q 005242 223 S---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~~ 240 (706)
+ .-.+|.++.|.|....+
T Consensus 638 ~k~lv~~~gG~I~v~S~~g~G 658 (924)
T PRK10841 638 CEKLINMMDGDISVDSEPGMG 658 (924)
T ss_pred HHHHHHHCCCEEEEEEcCCCc
Confidence 3 24689999999986554
No 70
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.45 E-value=0.0042 Score=78.16 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhhhhHHhc-----CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH--------hh-hccccccCC
Q 005242 144 WAFGAIAELLDNAIDEIQN-----GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR--------CM-SFGFSDKKS 209 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~-----gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~--------~m-~fG~S~K~~ 209 (706)
-+.-.+-|+||||+|...+ .++.|.|.+..+ ...|.|.|||.||+.+--.. +| .+-++.+.+
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d----~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEE----NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEecc----CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 3445789999999998652 368888888642 35799999999998643211 12 122344543
Q ss_pred ----CCccCccccchhhHHhhcCCeEEEEEeec
Q 005242 210 ----KSVIGQYGNGFKTSSMRLGADVIVFSRHL 238 (706)
Q Consensus 210 ----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~ 238 (706)
...-|+.|+|.+.+- .+...+.|.++..
T Consensus 133 d~~yKvSGGlhGVGasvvN-alS~~f~Vev~r~ 164 (1388)
T PTZ00108 133 DTEKRVTGGRNGFGAKLTN-IFSTKFTVECVDS 164 (1388)
T ss_pred CCceeeecccccCCccccc-cccceEEEEEEEC
Confidence 345799999987654 6899999999987
No 71
>PRK13557 histidine kinase; Provisional
Probab=96.42 E-value=0.018 Score=63.94 Aligned_cols=92 Identities=26% Similarity=0.320 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeC-------------CCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCC
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISN-------------PRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKS 211 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n-------------~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~ 211 (706)
+..++..|+.||+++...+ ..+.|..... ..++...|.|.|||.||+++.+.+.|...++.+..
T Consensus 278 l~~vl~nll~NA~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~-- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEG-GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE-- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccC-CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--
Confidence 4568999999999985433 3344433210 01234579999999999999999999655555422
Q ss_pred ccCccccchh---hHHhhcCCeEEEEEeecCC
Q 005242 212 VIGQYGNGFK---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 212 ~IGrfG~GfK---sAs~~LG~~v~V~SK~~~~ 240 (706)
.+-.|+||. .....+|..+.|.|...++
T Consensus 355 -~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G 385 (540)
T PRK13557 355 -GKGTGLGLSMVYGFAKQSGGAVRIYSEVGEG 385 (540)
T ss_pred -CCCCCccHHHHHHHHHHCCCEEEEEecCCCc
Confidence 234588874 3345689999999886554
No 72
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.32 E-value=0.03 Score=52.19 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhhHH-h-cCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEI-Q-NGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~-~-~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+..|+.||+.||+..- . .....|.|.+... ++...|.|.|+|.||+. +...+...++.+. ..+..|+|+..
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~---~~~~~GlGL~l 112 (137)
T TIGR01925 40 IKTAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP---ELERSGMGFTV 112 (137)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC---CCCCCcccHHH
Confidence 5568999999999741 1 1134566666543 34577899999999973 4455543333322 22346888865
Q ss_pred HHhhcCCeEEEEEeecC
Q 005242 223 SSMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 As~~LG~~v~V~SK~~~ 239 (706)
.. .++.++.+.+....
T Consensus 113 v~-~~~~~l~~~~~~~~ 128 (137)
T TIGR01925 113 ME-NFMDDVSVDSEKEK 128 (137)
T ss_pred HH-HhCCcEEEEECCCC
Confidence 43 56677777776443
No 73
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.13 E-value=0.022 Score=68.12 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=75.0
Q ss_pred cccccCCccccccCchhhhccccCCcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHH
Q 005242 118 KATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMR 197 (706)
Q Consensus 118 ~~~~~~~~~~~~v~p~fL~Snstsh~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~ 197 (706)
....+.....+++|+..|+. +|..|||||+..-- ..+.|.|..... ...-.+.|+|+|.|++++++.
T Consensus 759 ~v~~~~dl~li~~D~~LieQ----------VLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~ 825 (890)
T COG2205 759 VVSVPVDLPLIHVDSPLIEQ----------VLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELE 825 (890)
T ss_pred EEecCCCCceEecCHHHHHH----------HHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHH
Confidence 34445666778888888776 89999999998622 235577766543 457889999999999999999
Q ss_pred Hhh-hccccccCCCCccCccccchh---hHHhhcCCeEEEEEeecCC
Q 005242 198 RCM-SFGFSDKKSKSVIGQYGNGFK---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 198 ~~m-~fG~S~K~~~~~IGrfG~GfK---sAs~~LG~~v~V~SK~~~~ 240 (706)
+.| .|-+-.+.+. ..--|+||. .-.-..|.++.+..+..++
T Consensus 826 ~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gG 870 (890)
T COG2205 826 RIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGG 870 (890)
T ss_pred HhhhhhhcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 999 5655555332 222355553 2224678999998866554
No 74
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.04 E-value=0.0048 Score=72.31 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhHHhc---C-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH---------hhhcc---ccccCC--
Q 005242 148 AIAELLDNAIDEIQN---G-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR---------CMSFG---FSDKKS-- 209 (706)
Q Consensus 148 AIaELVDNAiDA~~~---g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~---------~m~fG---~S~K~~-- 209 (706)
-+.|+||||+|...+ | ++.|.|.+. + ..|+|.|||.||+.+--.. -+-|| .+.|.+
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~-d-----gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK-N-----NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc-C-----CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 368999999998765 4 788888775 2 4799999999998643211 01122 233332
Q ss_pred -CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 210 -KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 210 -~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
...-|..|+|.+.+ -.|...+.|.++..+
T Consensus 123 ykvSGGlhGVG~svv-NaLS~~~~V~v~~~~ 152 (602)
T PHA02569 123 NRVTGGMNGVGSSLT-NFFSVLFIGETCDGK 152 (602)
T ss_pred ceeeCCcCCccceee-eccchhhheEEEcCC
Confidence 23569999998754 468888888775433
No 75
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.89 E-value=0.034 Score=60.51 Aligned_cols=77 Identities=29% Similarity=0.352 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCcccc-chhh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGN-GFKT 222 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~-GfKs 222 (706)
.++-++.|.|-|++-. ++|+.+.|.+..+ ++.-.|.|.|||.|.+++... |-||+ |++-
T Consensus 279 ~l~rivQEaltN~~rH--a~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~----------------~~~GL~~mre 338 (365)
T COG4585 279 ALFRIVQEALTNAIRH--AQATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG----------------GGFGLLGMRE 338 (365)
T ss_pred HHHHHHHHHHHHHHhc--cCCceEEEEEEEc--CCEEEEEEEECCcCCCccccC----------------CCcchhhHHH
Confidence 4788999999999986 5799999988864 456899999999997764321 33444 4443
Q ss_pred HHhhcCCeEEEEEeecCC
Q 005242 223 SSMRLGADVIVFSRHLND 240 (706)
Q Consensus 223 As~~LG~~v~V~SK~~~~ 240 (706)
=...+|..+.|.|....+
T Consensus 339 Rv~~lgG~l~i~S~~g~G 356 (365)
T COG4585 339 RVEALGGTLTIDSAPGQG 356 (365)
T ss_pred HHHHcCCEEEEEecCCCc
Confidence 346799999999998443
No 76
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.81 E-value=0.015 Score=56.62 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+.-|+.|++-||+..-..+. ..|.|.+... ++...|.|.|+|.||+++.+...+.+.+...... ....-|+|+..
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~-~~~~~G~GL~l 119 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE-DLREGGLGLFL 119 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCccc-ccCCCceeHHH
Confidence 45689999999998632221 3466666543 4678899999999999988877664433221111 11123788765
Q ss_pred HHhhcCCeEEEEE
Q 005242 223 SSMRLGADVIVFS 235 (706)
Q Consensus 223 As~~LG~~v~V~S 235 (706)
.. .+...+.+.+
T Consensus 120 i~-~l~d~v~~~~ 131 (161)
T PRK04069 120 IE-TLMDDVTVYK 131 (161)
T ss_pred HH-HHHHhEEEEc
Confidence 54 4666777664
No 77
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.64 E-value=0.038 Score=66.16 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=66.8
Q ss_pred HHHHHHHhhhhHH--------hcCCceE-EEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-hh-----------------
Q 005242 148 AIAELLDNAIDEI--------QNGAAFV-IVDKISNPRDGTPALLIQDDGGGMDPEAMRR-CM----------------- 200 (706)
Q Consensus 148 AIaELVDNAiDA~--------~~gAt~V-~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~-~m----------------- 200 (706)
-|-.||-||+|.- ++|.... .|.+...-.++.-.|.|.|||.|||++.+.. ++
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~E 515 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEE 515 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHH
Confidence 4678999999952 1222111 2333322346778899999999999887653 33
Q ss_pred ------hccccccCCCCccCccccch---hhHHhhcCCeEEEEEeecCCc
Q 005242 201 ------SFGFSDKKSKSVIGQYGNGF---KTSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 201 ------~fG~S~K~~~~~IGrfG~Gf---KsAs~~LG~~v~V~SK~~~~~ 241 (706)
..|+|.+...+.+.=.|+|| |+..-+||..+.|.|+.+.+.
T Consensus 516 i~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT 565 (716)
T COG0643 516 ILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGT 565 (716)
T ss_pred HHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 34666666667776679998 788889999999999998765
No 78
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.63 E-value=0.048 Score=60.28 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhHHhcC-------CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-------CCc
Q 005242 147 GAIAELLDNAIDEIQNG-------AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-------KSV 212 (706)
Q Consensus 147 sAIaELVDNAiDA~~~g-------At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-------~~~ 212 (706)
-.+-||..||+.|.... -..|+|.+..+ +....|.|.|-|+|++++++.+.|.+++|.-.. ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 46899999999997541 23367777654 457889999999999999999999999987521 233
Q ss_pred cCccccchhhHH---hhcCCeEEEEEeec
Q 005242 213 IGQYGNGFKTSS---MRLGADVIVFSRHL 238 (706)
Q Consensus 213 IGrfG~GfKsAs---~~LG~~v~V~SK~~ 238 (706)
+--||.|+..+- -..|.++.+.|-..
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~SleG 369 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSLEG 369 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEeeec
Confidence 445777765332 34677777777653
No 79
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.61 E-value=0.016 Score=72.21 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhHHh-c-CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHH--------Hhh-hccccccCC----
Q 005242 145 AFGAIAELLDNAIDEIQ-N-GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMR--------RCM-SFGFSDKKS---- 209 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~-~-gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~--------~~m-~fG~S~K~~---- 209 (706)
+.--+-|+||||+|... + .++.|.|.+..+ ...|+|.|||.||+.+--. -+| .+-.+.|.+
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~----dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~y 128 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDVE----QNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEK 128 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcC----CCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccc
Confidence 44468999999999763 2 367888887642 3589999999999875221 112 122344433
Q ss_pred CCccCccccchhhHHhhcCCeEEEEEee
Q 005242 210 KSVIGQYGNGFKTSSMRLGADVIVFSRH 237 (706)
Q Consensus 210 ~~~IGrfG~GfKsAs~~LG~~v~V~SK~ 237 (706)
..+-|+.|+|.+.+- .+...+.|.++.
T Consensus 129 kvSGGlhGvGasvvN-aLS~~f~Vev~d 155 (1135)
T PLN03128 129 KTTGGRNGYGAKLAN-IFSTEFTVETAD 155 (1135)
T ss_pred eeeccccCCCCeEEE-eecCeEEEEEEE
Confidence 245699999987554 688999999984
No 80
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=95.41 E-value=0.056 Score=49.47 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
.+.-|+.|++-||+..-..+. ..|.|.+... .+.-.|.|.|+|.|+++..+.....-+. .....-|.|+.
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~G~Gl~ 102 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREGGRGLF 102 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC------CCCCCCCcCHH
Confidence 356699999999999743322 3566665554 4568899999999999987665432221 22233488876
Q ss_pred hHHhhcCCeEEE
Q 005242 222 TSSMRLGADVIV 233 (706)
Q Consensus 222 sAs~~LG~~v~V 233 (706)
... ++..++.+
T Consensus 103 li~-~l~D~~~~ 113 (125)
T PF13581_consen 103 LIR-SLMDEVDY 113 (125)
T ss_pred HHH-HHHcEEEE
Confidence 554 68899988
No 81
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.41 E-value=0.057 Score=61.71 Aligned_cols=70 Identities=29% Similarity=0.440 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
....++.|+++||+.+. .+..|.|.+... ++.-.|.|.|||.||++++ +..|+|+..+
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~------------------~~~GLGL~iv 467 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQQ--DERLMLVIEDDGSGLPPGS------------------GQQGFGLRGM 467 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEEc--CCEEEEEEEECCCCCCcCC------------------CCCCCcHHHH
Confidence 35668899999999973 456677776643 4557899999999998752 1138887532
Q ss_pred ---HhhcCCeEEEEE
Q 005242 224 ---SMRLGADVIVFS 235 (706)
Q Consensus 224 ---s~~LG~~v~V~S 235 (706)
.-.+|.++.+.|
T Consensus 468 r~iv~~~GG~i~v~S 482 (495)
T PRK11644 468 RERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHcCCEEEEEc
Confidence 346899999988
No 82
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.34 E-value=0.056 Score=62.13 Aligned_cols=77 Identities=27% Similarity=0.393 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh--h
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK--T 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK--s 222 (706)
...-++|-+-||+.. +.|+.|+|.+..++ |...+.|.|||+|++.. ....|.||+-.- .
T Consensus 482 lLqIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~---------------~e~~gHyGL~IM~ER 542 (574)
T COG3850 482 LLQIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA---------------AEPSGHYGLNIMRER 542 (574)
T ss_pred HHHHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc---------------cCCCCCcchHHHHHH
Confidence 345689999999986 57899999998763 78999999999998873 355689998752 3
Q ss_pred HHhhcCCeEEEEEeecCCc
Q 005242 223 SSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 223 As~~LG~~v~V~SK~~~~~ 241 (706)
| -+|+.++.|..+..++.
T Consensus 543 A-~~L~~~L~i~~~~~gGT 560 (574)
T COG3850 543 A-QRLGGQLRIRRREGGGT 560 (574)
T ss_pred H-HHhcCeEEEeecCCCCe
Confidence 3 38999999999988763
No 83
>PRK03660 anti-sigma F factor; Provisional
Probab=95.27 E-value=0.13 Score=48.28 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhhHHhcC-C-ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEIQNG-A-AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~g-A-t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+.-|+.|++.||+..-... . ..|.|.+... ++...|.|.|+|.||++ +...+...++.+.. -+.-|+|+..
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~---~~~~GlGL~i 112 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKPE---LERSGMGFTV 112 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCCC---CCCccccHHH
Confidence 5568999999999642111 1 3466665543 34567899999999986 44445433332211 1235889876
Q ss_pred HHhhcCCeEEEEEeecC
Q 005242 223 SSMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 As~~LG~~v~V~SK~~~ 239 (706)
+. +++..+.+.+...+
T Consensus 113 ~~-~~~~~i~~~~~~~~ 128 (146)
T PRK03660 113 ME-SFMDEVEVESEPGK 128 (146)
T ss_pred HH-HhCCeEEEEecCCC
Confidence 54 57777777665443
No 84
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.13 E-value=0.068 Score=61.48 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh-
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK- 221 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK- 221 (706)
.+++..|.|+|.||+.+ +.++.|.|.+... ++...|.|.|||.||+++.- + .-|+|+.
T Consensus 468 ~~l~~il~ell~NA~kh--a~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~-------~~glGL~i 526 (569)
T PRK10600 468 IHLLQIAREALSNALKH--AQASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R-------SNHYGLII 526 (569)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C-------CCCccHHH
Confidence 35778899999999986 3456777777643 45678999999999998531 0 1256653
Q ss_pred --hHHhhcCCeEEEEEeecCC
Q 005242 222 --TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 --sAs~~LG~~v~V~SK~~~~ 240 (706)
.-.-++|.++.|.|...++
T Consensus 527 ~~~~~~~lgG~l~i~s~~~~G 547 (569)
T PRK10600 527 MRDRAQSLRGDCRVRRRESGG 547 (569)
T ss_pred HHHHHHHcCCEEEEEECCCCC
Confidence 2234699999999987654
No 85
>PRK13560 hypothetical protein; Provisional
Probab=94.74 E-value=0.08 Score=62.00 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh--
Q 005242 147 GAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT-- 222 (706)
Q Consensus 147 sAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs-- 222 (706)
..|.+||.||+++...+ ...|.|.+... .++...|.|.|||.||+++.. +. .| -|+||..
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~~-~~~~v~i~V~D~G~GI~~~~~-----~~---------~~-~gLGLai~~ 777 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIREQ-GDGMVNLCVADDGIGLPAGFD-----FR---------AA-ETLGLQLVC 777 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEc-CCCEEEEEEEeCCCcCCcccc-----cc---------cc-CCccHHHHH
Confidence 36789999999974322 23566665542 134567999999999998621 11 00 1678743
Q ss_pred -HHhhcCCeEEEEEe
Q 005242 223 -SSMRLGADVIVFSR 236 (706)
Q Consensus 223 -As~~LG~~v~V~SK 236 (706)
..-.+|..+.|.|.
T Consensus 778 ~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 778 ALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHcCCEEEEEcC
Confidence 23478999999985
No 86
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.51 E-value=0.1 Score=50.92 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+.-|+.|++-||+..--.+ ...|.|.+... ++...|.|.|+|.|++++.+...+....... .......-|.||..
T Consensus 43 l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~-~~~~~~~~G~GL~L 119 (159)
T TIGR01924 43 LKIAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSE-PIDDLREGGLGLFL 119 (159)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCC-CcccCCCCccCHHH
Confidence 5569999999999863211 13566766653 4567889999999999988776543211111 11112234889876
Q ss_pred HHhhcCCeEEEEE
Q 005242 223 SSMRLGADVIVFS 235 (706)
Q Consensus 223 As~~LG~~v~V~S 235 (706)
.- ++..++.+.+
T Consensus 120 i~-~L~D~v~~~~ 131 (159)
T TIGR01924 120 IE-TLMDEVEVYE 131 (159)
T ss_pred HH-HhccEEEEEe
Confidence 64 7888888875
No 87
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=93.23 E-value=0.12 Score=58.58 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhHHhc-CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHHh
Q 005242 147 GAIAELLDNAIDEIQN-GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSM 225 (706)
Q Consensus 147 sAIaELVDNAiDA~~~-gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs~ 225 (706)
-.|-=|||||+-+-.. ......|.+.....++.-.+.|.|||.||+++......+-|..+ -|+|+...--
T Consensus 353 l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r---------~giGL~Nv~~ 423 (456)
T COG2972 353 LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR---------SGIGLSNVKE 423 (456)
T ss_pred HHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc---------ccccHHHHHH
Confidence 3466799999998421 22333444443223567788999999999998888766433222 4899875554
Q ss_pred hcC----C-eEEEEEeecC
Q 005242 226 RLG----A-DVIVFSRHLN 239 (706)
Q Consensus 226 ~LG----~-~v~V~SK~~~ 239 (706)
++. . .+.+.|+.++
T Consensus 424 rl~~~~g~~~~~i~s~~~~ 442 (456)
T COG2972 424 RLKLYFGEPGLSIDSQPGK 442 (456)
T ss_pred HHHHeeCCcceeEeecCCC
Confidence 443 3 2445555444
No 88
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.37 E-value=0.62 Score=52.85 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh---
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK--- 221 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK--- 221 (706)
....+.+|+.||+.+. .+..+.|.+... .++...|.|.|||.||++++. ..-|+|+.
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~-----------------~~~glGL~i~~ 531 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTN-PDGEHTVSIRDDGIGIGELKE-----------------PEGHYGLNIMQ 531 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEc-CCCEEEEEEEECCcCcCCCCC-----------------CCCCcCHHHHH
Confidence 4567899999999862 345666666543 134567999999999987321 01255653
Q ss_pred hHHhhcCCeEEEEEeecCC
Q 005242 222 TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 sAs~~LG~~v~V~SK~~~~ 240 (706)
.-.-.+|..+.|.|...++
T Consensus 532 ~iv~~~~G~i~v~s~~~~G 550 (565)
T PRK10935 532 ERAERLGGTLTISQPPGGG 550 (565)
T ss_pred HHHHHcCCEEEEEECCCCc
Confidence 3334788999998876654
No 89
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=92.33 E-value=0.39 Score=56.42 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred ccccCchhhhccccCCcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhc----
Q 005242 127 FLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSF---- 202 (706)
Q Consensus 127 ~~~v~p~fL~Snstsh~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~f---- 202 (706)
.++|.| |+...+--.-.-.....||.||+..-......|.|...+ .+...++.|.|||.|++++-+.+.|.+
T Consensus 621 ei~i~~--lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r--~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl 696 (750)
T COG4251 621 EIRIAP--LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER--QEDEWTFSVRDNGIGIDPAYFERIFVIFQRL 696 (750)
T ss_pred eEEecc--cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec--cCCceEEEecCCCCCcCHHHHHHHHHHHHhc
Confidence 344555 544443333344567899999998744445667776554 346789999999999999999998732
Q ss_pred cccccCCCCccCccccchh---hHHhhcCCeEEEEEeecCC
Q 005242 203 GFSDKKSKSVIGQYGNGFK---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 203 G~S~K~~~~~IGrfG~GfK---sAs~~LG~~v~V~SK~~~~ 240 (706)
++..++ .| -|+|+. --.-+.+..+.|.|+...+
T Consensus 697 ~s~~~y----~g-tG~GL~I~kkI~e~H~G~i~vEs~~gEg 732 (750)
T COG4251 697 HSRDEY----LG-TGLGLAICKKIAERHQGRIWVESTPGEG 732 (750)
T ss_pred Cchhhh----cC-CCccHHHHHHHHHHhCceEEEeecCCCc
Confidence 222222 22 477763 2234677888888886544
No 90
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=91.61 E-value=0.29 Score=57.33 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhHHhcC-CceE---EEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccc
Q 005242 147 GAIAELLDNAIDEIQNG-AAFV---IVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSD 206 (706)
Q Consensus 147 sAIaELVDNAiDA~~~g-At~V---~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~ 206 (706)
.|+..|+.||.+|+.+. +... .|.+..+..+|...+.|.|||.|.+.+.+.+++ .+-+++
T Consensus 603 Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr 667 (712)
T COG5000 603 QVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTR 667 (712)
T ss_pred HHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecc
Confidence 58999999999998542 1111 234444445678889999999999999999999 444443
No 91
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.46 E-value=0.51 Score=49.40 Aligned_cols=51 Identities=25% Similarity=0.143 Sum_probs=45.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.++..|.+||.+|+.+|.-+...-+-|..|-++|+.+||+.+.+...|-..
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 478899999999999999999999999999999999999888777666544
No 92
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=91.44 E-value=0.47 Score=54.04 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccC
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKK 208 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~ 208 (706)
.+...+..|+-||+||+...+.-|.|+...+ ..+..+|.|.|||.|-+.+-+.+.+.+.+++|.
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 4567889999999999876666565555432 456788999999999999999999987777763
No 93
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=90.41 E-value=1.2 Score=48.73 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCc---eEEEE------EEeCC--CCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCc
Q 005242 144 WAFGAIAELLDNAIDEIQNGAA---FVIVD------KISNP--RDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSV 212 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt---~V~I~------i~~n~--~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~ 212 (706)
-+..|+..||.||..|....+. .|.+. +.... ..-.--|.|+|||.|++++-....|..--|.|.+.+
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~Gs- 319 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGGT- 319 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCCc-
Confidence 3567999999999999764221 22221 11100 011234779999999999888888866666665444
Q ss_pred cCccccchhhHHh---hcCCeEEEEEeec
Q 005242 213 IGQYGNGFKTSSM---RLGADVIVFSRHL 238 (706)
Q Consensus 213 IGrfG~GfKsAs~---~LG~~v~V~SK~~ 238 (706)
|+|+..+.= ..|..+..-|...
T Consensus 320 ----GLGLala~~li~qH~G~Ie~~S~Pg 344 (363)
T COG3852 320 ----GLGLALAQNLIDQHGGKIEFDSWPG 344 (363)
T ss_pred ----cccHHHHHHHHHhcCCEEEEeccCC
Confidence 888765442 3445555555543
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.65 E-value=0.98 Score=50.17 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccCCCCccCccccchhhHH
Q 005242 146 FGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKKSKSVIGQYGNGFKTSS 224 (706)
Q Consensus 146 fsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~~~~~IGrfG~GfKsAs 224 (706)
...|-.+|.||+..-- +...|.|.+.. .+..-.|.|.|.|.|++.+++.+.| +|-.-+|......|-=|+||.-|-
T Consensus 344 tQVldNii~NA~KYsP-~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIak 420 (459)
T COG5002 344 TQVLDNIISNALKYSP-DGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAK 420 (459)
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHH
Confidence 4578889999988633 23556666554 3456789999999999999999999 677666654455677789985332
Q ss_pred ---hhcCCeEEEEEe
Q 005242 225 ---MRLGADVIVFSR 236 (706)
Q Consensus 225 ---~~LG~~v~V~SK 236 (706)
-..|..+-.-|.
T Consensus 421 eiV~~hgG~iWA~s~ 435 (459)
T COG5002 421 EIVQAHGGRIWAESE 435 (459)
T ss_pred HHHHHhCCeEEEecc
Confidence 234554444444
No 95
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.94 E-value=1 Score=46.61 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECCCCCCH
Q 005242 147 GAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDGGGMDP 193 (706)
Q Consensus 147 sAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG~GM~~ 193 (706)
=+|-||+-||+..-.-+ ...|.|.+.....++...+.|.|||.|++.
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 37899999999863222 345666665542211378999999999876
No 96
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.43 E-value=2.8 Score=40.86 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHhhhhHHhcCC---ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccc
Q 005242 143 KWAFGAIAELLDNAIDEIQNGA---AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNG 219 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gA---t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~G 219 (706)
.....|+.|++.|++.+.-++. ..|.|.+... .+...++|.|.| .+.+++...+..++... ..+-.-|+|
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G--~~~~~~~~~~~~~~~~~---~~~~~~G~G 111 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQG--PGIEDLEESLGPGDTTA---EGLQEGGLG 111 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCC--CCCCCHHHhcCCCCCCC---ccccccccc
Confidence 4567799999999998743322 3466666553 467899999999 45556667776663332 122222666
Q ss_pred hhhHHhhcCCeEEEEEeecC
Q 005242 220 FKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 220 fKsAs~~LG~~v~V~SK~~~ 239 (706)
|..+ .++-.+|.+.....+
T Consensus 112 l~l~-~~~~D~~~~~~~~~~ 130 (146)
T COG2172 112 LFLA-KRLMDEFSYERSEDG 130 (146)
T ss_pred HHHH-hhhheeEEEEeccCC
Confidence 6433 467788888755443
No 97
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=85.46 E-value=2.7 Score=47.01 Aligned_cols=84 Identities=26% Similarity=0.326 Sum_probs=57.1
Q ss_pred CchhhhccccCCcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCC
Q 005242 131 HPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSK 210 (706)
Q Consensus 131 ~p~fL~Snstsh~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~ 210 (706)
+++-.+-+-|.--..+--.-|++.|-... +.|+.|.|.+.. .+..-++.|.|||.|+++.
T Consensus 397 ~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~--~~e~l~Lei~DdG~Gl~~~---------------- 456 (497)
T COG3851 397 RINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQ--QDERLMLEIEDDGSGLPPG---------------- 456 (497)
T ss_pred ccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEee--CCcEEEEEEecCCcCCCCC----------------
Confidence 34444444455566788889999998875 567888877764 2445789999999998762
Q ss_pred CccCccccchh----hHHhhcCCeEEEEEee
Q 005242 211 SVIGQYGNGFK----TSSMRLGADVIVFSRH 237 (706)
Q Consensus 211 ~~IGrfG~GfK----sAs~~LG~~v~V~SK~ 237 (706)
-|.-|.|++ .. -.+|.++++.|.+
T Consensus 457 --~~v~G~Gl~GmrERV-saLGG~ltlssq~ 484 (497)
T COG3851 457 --SGVQGFGLTGMRERV-SALGGTLTLSSQH 484 (497)
T ss_pred --CCccCcCcchHHHHH-HHhCCceEEEecc
Confidence 233355543 22 3589999988743
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.27 E-value=5.3 Score=35.48 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=48.2
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
-.|+.+|+++|..|..+-.+......+|.++-++|+.|...|+.....|+--+.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 368899999999999999999899999999999999999999999998886543
No 99
>PRK13559 hypothetical protein; Provisional
Probab=82.39 E-value=2.2 Score=45.64 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhHHh--cCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEIQ--NGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~--~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+..++.|||.||+.+-. .....|.|.+.....++...|.|.|||+||+++.- .-|+|+..
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~------------------~~g~Gl~i 329 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA------------------KRGFGTVI 329 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC------------------CCCcHHHH
Confidence 45689999999998721 12345666663233355678889999999776410 12666542
Q ss_pred H---Hhh-cCCeEEEEEee
Q 005242 223 S---SMR-LGADVIVFSRH 237 (706)
Q Consensus 223 A---s~~-LG~~v~V~SK~ 237 (706)
. .-. +|..+.+.+..
T Consensus 330 ~~~~v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 330 IGAMVESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHHHHHcCCeEEEEEcC
Confidence 2 224 89999888763
No 100
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.86 E-value=6.6 Score=39.23 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=45.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
...|..||..|+.+-.++.+.-++|..+...|.+++..++..|+.|+.-+.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999987554
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.12 E-value=10 Score=33.03 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=45.7
Q ss_pred ccchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 643 LRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 643 ~~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
+--.++.+|+++|..|..+-.+.......|...-++|+.|-.-|+.....|+--
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334688899999999999999888888889999999999999999888887653
No 102
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=76.94 E-value=11 Score=32.71 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=41.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 649 IILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 649 ~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
..|+|-|..++.+|+++.+-..+.......|...+.|++....+|-.|
T Consensus 20 ealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 20 EALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999999999999999999999999999999999888777543
No 103
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.41 E-value=19 Score=31.40 Aligned_cols=52 Identities=29% Similarity=0.404 Sum_probs=43.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.+..|..||..|+.+=.++...-.+|....++|+.|-+.|+.....|+.-+.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556777888888887888888889999999999999999999999887665
No 104
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.61 E-value=13 Score=31.62 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=37.9
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNC 688 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~ 688 (706)
.+....+..|..+..+--+.+++-++|..++..|+.++++.++
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667788899999999999999999999999999999999875
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.47 E-value=13 Score=41.20 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=47.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
-..++.+||..|.++-.++..--.|.+...++|-.||.|+.+--..|.+|+++
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999998888888899999999999999988889888864
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.15 E-value=9.9 Score=41.64 Aligned_cols=52 Identities=29% Similarity=0.329 Sum_probs=28.1
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLK----SELGEYNCEYERLMAEL 697 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~----~el~~~~~~~~~l~~~~ 697 (706)
+....|.+||.+||.++..+.....+++.|+++|- ++|.++..+.+.|-.||
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL 222 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL 222 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 34556778888888877765544334444444433 24444444444444443
No 107
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.06 E-value=13 Score=38.85 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=41.2
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+...+.++-.+|+.+-.+-.+.=+.+.-++..|+++.++.+.+|++|++|...|
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445555666666666665555556666788899999999999999999998776
No 108
>PF14501 HATPase_c_5: GHKL domain
Probab=66.00 E-value=15 Score=32.72 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECC
Q 005242 145 AFGAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDG 188 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG 188 (706)
+...+.-|+|||++|...- ...|.|.+... ++...|.|.-..
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~~--~~~~~i~i~N~~ 49 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIREE--NGFLVIIIENSC 49 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--CCEEEEEEEECC
Confidence 4567899999999997542 45677766653 455555555543
No 109
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=65.69 E-value=22 Score=39.71 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhHHh--cCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 145 AFGAIAELLDNAIDEIQ--NGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~--~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
+-+|+--.++-|+.-+. ++|+.|.|.+.. .++...+.|.|||.|.+.+++..-+ .|+|+..
T Consensus 356 ~~talyRv~QEaltNIErHa~Atrv~ill~~--~~d~vql~vrDnG~GF~~~~~~~~~---------------~GiGLRN 418 (459)
T COG4564 356 VATALYRVVQEALTNIERHAGATRVTILLQQ--MGDMVQLMVRDNGVGFSVKEALQKR---------------HGIGLRN 418 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEecc--CCcceEEEEecCCCCccchhhccCc---------------ccccccc
Confidence 44677777777766553 378988887764 4677889999999998876665432 4788741
Q ss_pred H---HhhcCCeEEEEEeecC
Q 005242 223 S---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~ 239 (706)
- ...+|..+.|.|...|
T Consensus 419 MrERma~~GG~~~v~s~p~G 438 (459)
T COG4564 419 MRERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHHHhCceEEEEecCCC
Confidence 1 1258999999998876
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.83 E-value=30 Score=33.08 Aligned_cols=52 Identities=31% Similarity=0.474 Sum_probs=29.5
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELD-----------------QKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~-----------------~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.|+..|+.+|..++..+.+....+.++. ..+..|+..++..|..|+....++
T Consensus 51 ~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 51 EEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666554444444443332 235566666777777776666554
No 111
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=61.65 E-value=30 Score=32.12 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=43.7
Q ss_pred EEEeeeccCC--CccccceEEEEEeCcccchh--hhhhcc-cc-cCccceeEEEEEe--cC--c----cCCCCCcchhcc
Q 005242 430 ITTIGFLKDA--PHISIHGFNVYHKNRLILPF--WQVVSY-SY-RDSRGRGVVGVLE--AN--F----IEPTHSKQDFER 495 (706)
Q Consensus 430 ~~t~Gflkea--~~~~~qGf~VY~nnRLI~~~--wrVg~q-~~-~~s~grGVIGVle--an--f----lePthnKQdFe~ 495 (706)
....||+..+ ...+..++++|-|||+|..- .+...+ ++ ....++.-+.||. ++ . +.|+=..=-|.+
T Consensus 23 ~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~ 102 (119)
T PF01119_consen 23 FSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRD 102 (119)
T ss_dssp EEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSSTTTT-EEETT
T ss_pred EEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHccccccccceEEEecC
Confidence 3456777643 22456899999999999821 122111 00 1234555555544 33 1 667533333655
Q ss_pred -cHHHHHHHHHHHHHH
Q 005242 496 -TSLFQKLETRLKEMT 510 (706)
Q Consensus 496 -t~~y~~Le~~L~e~l 510 (706)
...+..+++.+.+.|
T Consensus 103 e~~i~~~i~~~i~~~L 118 (119)
T PF01119_consen 103 EDEILNLIEEAIREAL 118 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 677888888777765
No 112
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.15 E-value=27 Score=40.36 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=21.7
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKV 676 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~ 676 (706)
.+...|..+|+.|++|-+.+.++|+.+.+.+
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4667788888888888888877665554443
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.39 E-value=33 Score=41.73 Aligned_cols=54 Identities=30% Similarity=0.287 Sum_probs=46.1
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+...|++||++|+.++.++.+..++=++.+++|++.|.+.+..=..|-++|..
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999998999999999998888777766666654
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.14 E-value=45 Score=27.79 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 662 CLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 662 c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
..+++..-.+|......|+.++...+.++..|..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444445555555555555555555555555543
No 115
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.09 E-value=59 Score=39.63 Aligned_cols=56 Identities=32% Similarity=0.339 Sum_probs=46.6
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQK-------VTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~-------~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
......|..|-++|+++-......|+||.++ +.+|+.||.+.+.++++|-..+..|
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999999 4567778888888888888777665
No 116
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.26 E-value=31 Score=34.07 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=30.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQK---------VTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~---------~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+...|..+...|+.+|.++++..+.|.-. ..+|+.++++.+.+++.|...|..|
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544444444333 3456667777777777777777665
No 117
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.44 E-value=41 Score=35.58 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=40.4
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+.++..||..|..+-.+++..-.++.....+|+.|+...+.+++.|..|+-.|
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 56677788888888888888777888888888888877777777777665443
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.30 E-value=42 Score=33.10 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=43.1
Q ss_pred chhhhhHHHHhHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYEK---------RRVELDQKVTQLKSELGEYNCEYERLMA 695 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~---------~~~~l~~~~~~l~~el~~~~~~~~~l~~ 695 (706)
+.++..|.+|...|..+|..++. +..||...+.+|+.|+++.+.+.+.|-.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999888865 3568899999999999999999888865
No 119
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.21 E-value=74 Score=27.79 Aligned_cols=56 Identities=32% Similarity=0.431 Sum_probs=39.4
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+..+..|+.|=.+|-..=+.+..+=+.|..++..++.++.+.+.+-+.+..++..|
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777666655
No 120
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.95 E-value=29 Score=37.43 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=16.2
Q ss_pred hhhhhHHHHhHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEY 665 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~ 665 (706)
.....|.+||++|+.+-.++
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677899999999887666
No 121
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=51.84 E-value=27 Score=39.82 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 659 RAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 659 ~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.++|.|.+.+.+.|+++.++|+.++++.+.++..+=.++.
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~ 328 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVE 328 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3489999999999999999999999999999987655544
No 122
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=51.51 E-value=34 Score=41.95 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM 196 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL 196 (706)
-++.-+-|+++||.| ..+++..-.|.+..++ ....|.|.+||.|+.-+..
T Consensus 53 Gl~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 53 GLYKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred cHHHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 455678999999999 6666543333333332 4678999999999986543
No 123
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=51.06 E-value=14 Score=42.75 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=30.3
Q ss_pred HHHHHHhhhhHHhc---CCceEEEEEEeCCCCCcCeEEEEECCCCCCHH
Q 005242 149 IAELLDNAIDEIQN---GAAFVIVDKISNPRDGTPALLIQDDGGGMDPE 194 (706)
Q Consensus 149 IaELVDNAiDA~~~---gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~e 194 (706)
|-=||+||+..--. +.-.|.|.+.. .+..-.|.|.|||.|+.++
T Consensus 461 lQPLVENAIKHG~~~~~~~g~V~I~V~~--~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 461 LQPLVENAIKHGISQLKDTGRVTISVEK--EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhHHHHHHHHhcccchhcCCceEEEEEE--eCCeEEEEEecCCCCcCCC
Confidence 56799999975211 12345555544 3556889999999999996
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.39 E-value=53 Score=38.83 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=26.9
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
...+|+..|...+..+++.-.+|...+.+|+.+|+..+.++..|-.+.+.
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555566666666665555555554443
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.07 E-value=49 Score=35.94 Aligned_cols=57 Identities=32% Similarity=0.403 Sum_probs=40.0
Q ss_pred cchhhhhHHHHhHHHHHHHHHHHHHhHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 644 RDSATIILMQENEKLRAKCLEYEKRRVEL----DQK---VTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 644 ~~~~~~~l~~en~~l~~~c~~~~~~~~~l----~~~---~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+-.++..|+-||.-|...|..+|++.+-| -.| |.-|+-+|.-.+....+|-.|++-+
T Consensus 58 ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 58 EKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999999887654 333 3345566666666666666665543
No 126
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.04 E-value=54 Score=39.15 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=41.8
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRV----------ELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~----------~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+...++-|+.+|..+|.++..... +++-++..|+.+|++.+++-++|..+|..+
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888889999988866543 355667788899998888888887776654
No 127
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.09 E-value=52 Score=35.96 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNC 688 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~ 688 (706)
+.|-..|-.+|..++++-.+|+..++.|++||...|.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678899999999999999999999999987653
No 128
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=47.97 E-value=94 Score=27.34 Aligned_cols=51 Identities=27% Similarity=0.201 Sum_probs=33.1
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRV---------------ELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~---------------~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
..+..|.-||=-|+.++--++.+=. +|...+.+|++||.+.+....++...
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888876665443 45556666666666666655555443
No 129
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.92 E-value=1.1e+02 Score=27.34 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=35.6
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.|.++|+.|..+-.+-+.-=..|..-+.+||.+|.++...-+.|-++...
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999998877766666677888899999998877777766666543
No 130
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.84 E-value=47 Score=24.88 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005242 656 EKLRAKCLEYEKRRVELDQKVTQLKS 681 (706)
Q Consensus 656 ~~l~~~c~~~~~~~~~l~~~~~~l~~ 681 (706)
.+|-++=+.+.++.++|++|.++||+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555666677777777764
No 131
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=45.12 E-value=1e+02 Score=27.96 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=46.4
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
.|...+.++-+.+...-....+.-.-|++++.+|..|+.++..+|..++...++++
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~ 58 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALD 58 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45667777778888888888888888999999999999999999998887766654
No 132
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=44.85 E-value=37 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSE----LGEYNCEYERLMAEL 697 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~e----l~~~~~~~~~l~~~~ 697 (706)
.|.++|.++++...+|....++++.+ .++.-+++=+||-|+
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheY 48 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEY 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Confidence 57778888888888888888888776 333444444444443
No 133
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.66 E-value=1.4e+02 Score=36.85 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=36.8
Q ss_pred ceEEEEEeCcccc-hhhhhhcccccCccceeEEEEEecCccCCC-CCcchhcc--c---------HHHHHHHHHHHHHHH
Q 005242 445 HGFNVYHKNRLIL-PFWQVVSYSYRDSRGRGVVGVLEANFIEPT-HSKQDFER--T---------SLFQKLETRLKEMTW 511 (706)
Q Consensus 445 qGf~VY~nnRLI~-~~wrVg~q~~~~s~grGVIGVleanflePt-hnKQdFe~--t---------~~y~~Le~~L~e~l~ 511 (706)
|-+.+.+|+=.|+ .|.++... |+.-| |+..+.++|. ..++-|+- + ..-...+.+-.++.+
T Consensus 409 QhlllirnDy~~rpqYykLIEe------cISqI-vlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~k 481 (1102)
T KOG1924|consen 409 QHLLLIRNDYYIRPQYYKLIEE------CISQI-VLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEK 481 (1102)
T ss_pred HHHHHHhhhhhhhHHHHHHHHH------HHHHH-HHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677 35555321 22223 6777888883 33433441 1 112233445566779
Q ss_pred HHHHHHhh
Q 005242 512 EYWDYHCE 519 (706)
Q Consensus 512 ~YW~~~~~ 519 (706)
+||++.|.
T Consensus 482 k~~ke~ta 489 (1102)
T KOG1924|consen 482 KFDKELTA 489 (1102)
T ss_pred HHHHHHhH
Confidence 99999866
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.00 E-value=1e+02 Score=30.73 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=40.5
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+...+..+.+.+..++.++.+..+++...++.++.++++.+..+.+|...+..+
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777777777888888888888888888777776655
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.57 E-value=92 Score=34.21 Aligned_cols=49 Identities=39% Similarity=0.401 Sum_probs=29.4
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
.+...|.+|...|.++-.++|+...+|......|+.|+++.+.+-.++.
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~ 98 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW 98 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666555544433333
No 136
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.10 E-value=79 Score=27.81 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.|+++-+|+..+-+.|-+.++.++...|..+.+-.+|-.|-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888889888888888888877777777777777766553
No 137
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.36 E-value=98 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+|+..-++|+.||++++.+-..|-+|+..
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.37 E-value=1e+02 Score=31.98 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=22.9
Q ss_pred hhHHHHhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 649 IILMQENEKLRAKCLEY----EKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 649 ~~l~~en~~l~~~c~~~----~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
..|.+|..+|+++-.+. ..+..+|.+++.++..++.+.+.++++|..||.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554443333 233344444444444444445555555544444
No 139
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.31 E-value=1.2e+02 Score=28.56 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.--...|-.....+++.-+++..+.++|+.++.+.+.+.+.|-.|+
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556666666666666666666666666666666666665554
No 140
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=40.82 E-value=83 Score=36.14 Aligned_cols=51 Identities=27% Similarity=0.313 Sum_probs=30.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.+-..|..|+..|.++-++.++.+.+|..-+..++.+-++...+-.++..|
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666666655555544444444433
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.22 E-value=1.2e+02 Score=30.93 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 005242 679 LKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 679 l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|-.+|++.+.++++|.+||..+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777654
No 142
>PRK14141 heat shock protein GrpE; Provisional
Probab=40.00 E-value=22 Score=37.05 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.|..++..|+.|+++++.+|.++.+|+
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~ 61 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEM 61 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 143
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=39.17 E-value=96 Score=33.35 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=38.7
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+.......-.|..++-....-..++.|+..++..|++|.+..+.+-.+|-.|+..|
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666777777777777777777777777777777665
No 144
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.06 E-value=95 Score=36.14 Aligned_cols=54 Identities=28% Similarity=0.322 Sum_probs=37.6
Q ss_pred hhhhhHHHHhHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 646 SATIILMQENEKLRAKCLE--------YEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~--------~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+-..|++||+.|+.+-.. ++...+||.+..++|+.|+.+.+....+|...|..
T Consensus 80 ~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 80 SENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667899999999875433 23445677777777777777777777777766643
No 145
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.73 E-value=51 Score=34.92 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=20.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVEL 672 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l 672 (706)
.....|.+||+.|+.|..+++....++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888988888888776655543
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.93 E-value=98 Score=36.08 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=36.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELD---QKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~---~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
-..|.+...++.+-+.+|++.++|+. .+.+.++.+|++.+.+.++|.+++++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555666666666665 77788888888888888888888754
No 147
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.92 E-value=1.1e+02 Score=36.40 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=13.6
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELD 673 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~ 673 (706)
++...|+++|..|..+|.++++.-.+|.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~ 177 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444433333
No 148
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.53 E-value=99 Score=33.49 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=39.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l 693 (706)
.+..+.++-.+++..|...+.-|..|+.|+++-+.|||..++..+.|
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999988754443
No 149
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.14 E-value=1.5e+02 Score=31.07 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.4
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+..|.+.-+..-.+....|.+-+.|...+..|+.+|..++.+|+.+-.||..
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667777777788888888889999999999999999998843
No 150
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=36.89 E-value=97 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=19.6
Q ss_pred EeeeccCCC--ccccceEEEEEeCcccc
Q 005242 432 TIGFLKDAP--HISIHGFNVYHKNRLIL 457 (706)
Q Consensus 432 t~Gflkea~--~~~~qGf~VY~nnRLI~ 457 (706)
..||+..+. ..+..+.++|.|||+|.
T Consensus 29 i~G~is~~~~~~~~~~~q~~fVN~R~v~ 56 (122)
T cd00782 29 ISGYISKPDFGRSSKDRQFLFVNGRPVR 56 (122)
T ss_pred EEEEEECchhhcCCCccEEEEECCeEec
Confidence 357775443 35678899999999998
No 151
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.76 E-value=87 Score=29.39 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 669 RVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 669 ~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
-.+|..+.+.+..++++.+.+++.+.+|++.|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=36.42 E-value=2e+02 Score=23.87 Aligned_cols=48 Identities=33% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 653 QENEKLRAKCLEY-EKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 653 ~en~~l~~~c~~~-~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
..|..--.+|-+- ...-.+|+.+++.|..|.++.+.+...|..|+..|
T Consensus 11 ~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 11 ERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444555544 23445677777777777777777777777776665
No 153
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.05 E-value=1.3e+02 Score=32.21 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=45.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
..-++.+=+-+|.++.|+|+--.++.++++.|+.|++..++.--.|-.-++.|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777889999999999999999999999999999999877776666555
No 154
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.44 E-value=85 Score=31.37 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=14.5
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQ 678 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~ 678 (706)
.+.+|++.|..++.+++.--++|..+..+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555544443
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.15 E-value=1.5e+02 Score=28.97 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 651 LMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 651 l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
|+.|......+-.+++..-++|++...+++.||...+.+...|-.+|.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444433
No 156
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.07 E-value=77 Score=31.68 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=10.2
Q ss_pred hhhhhHHHHhHHHHHHH
Q 005242 646 SATIILMQENEKLRAKC 662 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c 662 (706)
.+...|..+|.+|..+.
T Consensus 50 ~e~~~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 50 VELELLREDNEQLETQY 66 (158)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45566666776666433
No 157
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=34.87 E-value=1.7e+02 Score=25.28 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=30.2
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
....|..||..|+++-.....-.. +|....+.++.+.+.++.-|++++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~-------~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERA-------QLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhc
Confidence 445677777777776555544444 444555666667777777777764
No 158
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.78 E-value=89 Score=33.37 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=42.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYE 691 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~ 691 (706)
.|...|..||+-||+.-.-+...-.||...+..|+.||.+.+..|.
T Consensus 104 een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 104 EENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 5788999999999999999999999999999999999999887654
No 159
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.76 E-value=83 Score=26.16 Aligned_cols=50 Identities=30% Similarity=0.372 Sum_probs=35.1
Q ss_pred HHHhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 652 MQENEKLRAKCLEYEK-RRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~-~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
++-|..--.+|-+-.+ .-.+|..++..|..+....+.++..|..++..|.
T Consensus 10 r~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 10 RERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556655433 3467888888888888888888888888887763
No 160
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=34.05 E-value=2.1e+02 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=20.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELD 673 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~ 673 (706)
.||..|+..|..|+.--.+...+..+|.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~ 32 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELK 32 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877777666554443
No 161
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.05 E-value=1.7e+02 Score=31.16 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=30.4
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+++.|++--..++.+..|..+-..+|......|+.|+++.+...++|-.|.--
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555556555666666666666666666555433
No 162
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=33.85 E-value=1.1e+02 Score=34.31 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=38.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
...|..++..|+.+...++...++|..+..+++.++++.+++.+.|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888888888888888888888888888888887664
No 163
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.81 E-value=1.4e+02 Score=26.79 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 654 ENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 654 en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.-.-|+|+-+|++.+-.+|.+.++.+++.-++...+..+|-.|..
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345688888888888888888888866666666666666655543
No 164
>smart00338 BRLZ basic region leucin zipper.
Probab=33.43 E-value=1.5e+02 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGEYNCE 689 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~ 689 (706)
.|..++..++..-.+|..++..|+.|+...+.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 165
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.22 E-value=1.5e+02 Score=29.73 Aligned_cols=53 Identities=26% Similarity=0.292 Sum_probs=27.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 647 ATIILMQENEKLRAKCLEYEKR---------------RVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~---------------~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+..+..+..+++++..+..+. .+.+..++++|+.||++.+.+.+.|-.+.+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544442 2344566666666666655555555444443
No 166
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=32.50 E-value=77 Score=30.45 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=21.0
Q ss_pred EeeeccCCCccccceEEEEEeCcccc
Q 005242 432 TIGFLKDAPHISIHGFNVYHKNRLIL 457 (706)
Q Consensus 432 t~Gflkea~~~~~qGf~VY~nnRLI~ 457 (706)
..||+..++..+....++|-|||.|.
T Consensus 30 v~G~is~p~~~sk~~q~ifVN~R~v~ 55 (141)
T cd03486 30 VSGYISSEGHYSKSFQFIYVNGRLYL 55 (141)
T ss_pred EEEEEcCCCCCCCceEEEEECCEEec
Confidence 35888765556788999999999997
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.35 E-value=2.1e+02 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=18.4
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l 693 (706)
...|...+..|..++.+.+..-..+..++.+|..++..++..-+.+
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333333333333333333
No 168
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.34 E-value=1.8e+02 Score=31.11 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=35.3
Q ss_pred hhhhhHHHHhHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYE----KRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~----~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.++..|...|..|..+..+.+ ..-.++...+..|+.||.+++.++++.+.|++.|
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 455666677777777765544 3334456667777777777777777776666654
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.39 E-value=1.9e+02 Score=30.92 Aligned_cols=52 Identities=25% Similarity=0.250 Sum_probs=36.9
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.+...|..+-..++.+|.+..+.-+.|...+..|+++++++......|-+++
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 4567777777888888888888888888888888888876554444443333
No 170
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.33 E-value=3.4e+02 Score=24.22 Aligned_cols=55 Identities=29% Similarity=0.269 Sum_probs=36.7
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQ-------KVTQLKSELGEYNCEYE----RLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~-------~~~~l~~el~~~~~~~~----~l~~~~~~~ 700 (706)
.||..+..|-..++..|.+||.+=+.=.+ |+-+|+..=.+.|.+|+ +|-.||.+.
T Consensus 11 ~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 11 QEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58899999999999999999987655444 44444444444444553 455555543
No 171
>PRK14153 heat shock protein GrpE; Provisional
Probab=31.23 E-value=74 Score=32.86 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 673 DQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 673 ~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
..++..|+.++++++.+|.++.+|++
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfe 64 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFD 64 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544
No 172
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.21 E-value=1.3e+02 Score=34.47 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=30.6
Q ss_pred cchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005242 644 RDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSE 682 (706)
Q Consensus 644 ~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~e 682 (706)
.-.+...|++||.+|..+|-..+.+++-|..++..++++
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999888887777766665543
No 173
>PRK14156 heat shock protein GrpE; Provisional
Probab=31.18 E-value=93 Score=31.70 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 666 EKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 666 ~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
...|..+..+++.|+.++++++.+|.++.+|++-+
T Consensus 26 ~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~ 60 (177)
T PRK14156 26 VVEETPEKSELELANERADEFENKYLRAHAEMQNI 60 (177)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777888889999999999999999988754
No 174
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.09 E-value=1.7e+02 Score=30.27 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=29.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYN 687 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~ 687 (706)
.+..|-++|..|.++|.+.|+--+-|.-+++.|..|..+..
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56677788888888888888877777777776665544433
No 175
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.82 E-value=1.7e+02 Score=25.62 Aligned_cols=38 Identities=37% Similarity=0.421 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005242 653 QENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEY 690 (706)
Q Consensus 653 ~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~ 690 (706)
.-.++||+...+.|+.-.+|..++..+..+++..+..+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555555555555544443
No 176
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.55 E-value=77 Score=33.70 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEY 690 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~ 690 (706)
+|.-+..+|.-+.+.+++..
T Consensus 85 elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 85 ELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 177
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=30.18 E-value=1.6e+02 Score=33.30 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDP 702 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~~ 702 (706)
+.+++=..+++.|++|..+...+..+|++.+.+++.+...+.++-.
T Consensus 325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~ 370 (373)
T COG5019 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370 (373)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666677788899999999999999999999999999988877654
No 178
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.90 E-value=2.2e+02 Score=29.10 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 651 LMQENEKLRAKCLEYEKRRVEL-DQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 651 l~~en~~l~~~c~~~~~~~~~l-~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
|..+-..|..+|+..++++.++ .........|+...+..-.+|-++|+
T Consensus 139 L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 139 LEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444432 22233344445555555555555444
No 179
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.76 E-value=2.2e+02 Score=27.39 Aligned_cols=55 Identities=29% Similarity=0.362 Sum_probs=32.4
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.....|+.+|..|-.+=++++..=.++...++.+-.++.+.+.+|..+..++..+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677776666665555555566666666666666666666666666544
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.75 E-value=3.8e+02 Score=23.49 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=29.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 649 IILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 649 ~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
..+......|+++-.+++..-.+|...-..|+.|.++.+.++.....-+.+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666555554444444
No 181
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=29.58 E-value=1.2e+02 Score=28.76 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=40.0
Q ss_pred eeeccCC----CccccceEEEEEeCcccch-h---hhhhcccc----cCccceeEEEEEec--C--c----cCCCCCcch
Q 005242 433 IGFLKDA----PHISIHGFNVYHKNRLILP-F---WQVVSYSY----RDSRGRGVVGVLEA--N--F----IEPTHSKQD 492 (706)
Q Consensus 433 ~Gflkea----~~~~~qGf~VY~nnRLI~~-~---wrVg~q~~----~~s~grGVIGVlea--n--f----lePthnKQd 492 (706)
.||+..+ ...+..+.++|-|||.|.. - ..+...++ ....++.-+.+|.. + . +.|+=..==
T Consensus 33 ~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~ 112 (132)
T cd03485 33 EGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVL 112 (132)
T ss_pred EEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCEEEEEEEcCCCceeeccCCccCEEE
Confidence 5777543 2245789999999999974 1 11111111 12356666667553 2 2 445333333
Q ss_pred hcc-cHHHHHHHHHHH
Q 005242 493 FER-TSLFQKLETRLK 507 (706)
Q Consensus 493 Fe~-t~~y~~Le~~L~ 507 (706)
|.+ ..++..+++.+.
T Consensus 113 f~~e~~v~~~i~~~v~ 128 (132)
T cd03485 113 LQNKEAVLQAVENLLE 128 (132)
T ss_pred EcChHHHHHHHHHHHH
Confidence 655 355555554443
No 182
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=1.5e+02 Score=29.26 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
-|..+|.+|++..++|....+.|...+++...+-.++..+-
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999888888888777776554
No 183
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.51 E-value=2.7e+02 Score=28.26 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=39.8
Q ss_pred cchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 644 RDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 644 ~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
....+..|..++..|..+|.+++..=+++.-.++.|.-|+.-.+-+|..|-..+..
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999998888877777777776666666655555555444443
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.71 E-value=1.6e+02 Score=33.33 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=29.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l 693 (706)
+...|.+.+..|+.+...++.....|..+..+|+.|+++.+++.++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666676666666665555
No 185
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.68 E-value=1.1e+02 Score=31.75 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=6.2
Q ss_pred hHHHHhHHHHHHHHHH
Q 005242 650 ILMQENEKLRAKCLEY 665 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~ 665 (706)
.|.++...|..++.++
T Consensus 44 ~l~~~l~~l~~e~~el 59 (195)
T PRK14148 44 RAKDTIKELEDSCDQF 59 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 186
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.35 E-value=1.2e+02 Score=32.27 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=44.4
Q ss_pred ccchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 643 LRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYER 692 (706)
Q Consensus 643 ~~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~ 692 (706)
+...|+.+|...|+-+...-.|.+......+-..+.+++.|+++.+.|-.
T Consensus 40 l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~ 89 (230)
T PF03904_consen 40 LENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFID 89 (230)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999998877754
No 187
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.33 E-value=1.1e+02 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 660 AKCLEYEKRRVELDQKVTQLKSELGEYNCEYER 692 (706)
Q Consensus 660 ~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~ 692 (706)
.+..++++.-.+|..+...+..|.+.+++..++
T Consensus 47 ~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 47 EALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444344444444444455444444433
No 188
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=27.25 E-value=55 Score=38.04 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHHhhhhHH--hcCCceEEEEEEeCCCCCcCeEEEEECCC---CCCHHHHHHhhhccccccC---------
Q 005242 143 KWAFGAIAELLDNAIDEI--QNGAAFVIVDKISNPRDGTPALLIQDDGG---GMDPEAMRRCMSFGFSDKK--------- 208 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~--~~gAt~V~I~i~~n~~~g~~~L~I~DNG~---GM~~eeL~~~m~fG~S~K~--------- 208 (706)
..|..|++|+|-||+=.- .-....|.|++.. ..|.|.-.|. ||+++++.+- .|..|
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iyd------DRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA~~l~ 338 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIYD------DRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLAKVLR 338 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEEC------CeEEEECCCCCCCCCChhHcccC----CCcccCHHHHHHHH
Confidence 568889999999998431 1123467777763 4688888786 7777776653 33322
Q ss_pred CCCccCccccchhh
Q 005242 209 SKSVIGQYGNGFKT 222 (706)
Q Consensus 209 ~~~~IGrfG~GfKs 222 (706)
.-.-+-++|-|+..
T Consensus 339 ~~~liE~~GSGi~r 352 (467)
T COG2865 339 DMGLIEERGSGIRR 352 (467)
T ss_pred HhhhHHHhCccHHH
Confidence 12445688999753
No 189
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.23 E-value=2.4e+02 Score=31.06 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=44.2
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++..+++.-..|+.+-.+|.....+|+.++..++.++.+.+.++..+..++.-|
T Consensus 21 ~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~el 74 (294)
T COG1340 21 EIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL 74 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666778888888888888999999999988888888888888888765
No 190
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.68 E-value=2.7e+02 Score=28.40 Aligned_cols=52 Identities=31% Similarity=0.268 Sum_probs=28.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc
Q 005242 649 IILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEY-NCEYERLMAELKAL 700 (706)
Q Consensus 649 ~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~-~~~~~~l~~~~~~~ 700 (706)
..+..+...|..++.++++...+|..+...+++..++. +.+-+....|+..|
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~l 175 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFL 175 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666665555442 23344444555443
No 191
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=26.51 E-value=1.6e+02 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.0
Q ss_pred EEeeeccCC----CccccceEEEEEeCcccc
Q 005242 431 TTIGFLKDA----PHISIHGFNVYHKNRLIL 457 (706)
Q Consensus 431 ~t~Gflkea----~~~~~qGf~VY~nnRLI~ 457 (706)
...||+..+ ......+.++|-|||+|.
T Consensus 46 ~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~ 76 (142)
T cd03484 46 KITGYISKPSHGCGRSSSDRQFFYINGRPVD 76 (142)
T ss_pred EEEEEECCCcccCCCCCCCcEEEEECCeecC
Confidence 345777643 234568899999999998
No 192
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.44 E-value=2.4e+02 Score=26.93 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=35.4
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYER 692 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~ 692 (706)
+...|..|...|.....+|+...+.+...+........+++.+|++
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~ 49 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER 49 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888777777777777777777775
No 193
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.43 E-value=1.3e+02 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++....++++.++++.+.+..+|..|...|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555444
No 194
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.18 E-value=2.9e+02 Score=25.98 Aligned_cols=52 Identities=33% Similarity=0.319 Sum_probs=39.3
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
.|.+|=.+||++-.-+.+.--+=..|...|+.+|.+-.....++..|+++|.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777888888877777777877777764
No 195
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.17 E-value=1e+02 Score=32.39 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005242 661 KCLEYEKRRVELDQKVTQLKSELGEYNCEYE 691 (706)
Q Consensus 661 ~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~ 691 (706)
++.++++.-.+|.-+..+|.-|.+.+++...
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433
No 196
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.77 E-value=2.6e+02 Score=29.25 Aligned_cols=9 Identities=56% Similarity=0.914 Sum_probs=3.2
Q ss_pred HHhHHHHHH
Q 005242 653 QENEKLRAK 661 (706)
Q Consensus 653 ~en~~l~~~ 661 (706)
++|..|+.+
T Consensus 34 ~~~~~l~~~ 42 (302)
T PF10186_consen 34 EENEELRRR 42 (302)
T ss_pred HHHHHHHHH
Confidence 333333333
No 197
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.64 E-value=1.4e+02 Score=31.24 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
..|..++..|+.++++++.+|.++.+++.-
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN 93 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDN 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666655543
No 198
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.46 E-value=2.8e+02 Score=27.52 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=30.9
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQ---KVTQLKSELGEYNCEYE 691 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~---~~~~l~~el~~~~~~~~ 691 (706)
..+..+.+|...|..+-.+..+.-+.|.- -+..|+.+|++++.+|+
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35556677777777777777666666665 45666667776666666
No 199
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.91 E-value=2.9e+02 Score=29.12 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=48.5
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
..+...-++-..|-..|..++..-.++..++.+|+..+.+.+.++..|-.....|.
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888999999999999999999999999999999999998888777664
No 200
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.90 E-value=3.4e+02 Score=26.76 Aligned_cols=53 Identities=25% Similarity=0.186 Sum_probs=36.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.+...|+.|+..|-..|.+...+-.+|+.-...+++-|+....+..++..++.
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~ 125 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777777666666666666666555555443
No 201
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.78 E-value=2.8e+02 Score=30.65 Aligned_cols=77 Identities=25% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCChhhHHHHHhhhccCCCccCCCCCCCCCCcccccccccchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005242 605 CRDSLEFEKVKMQASKGVDAVDDEPSAETHPAVTSTDQLRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
.+.+.+++..=|+|+-.. .|+ +++-..|+-+-.-|+.++++.+..=-+|..+....-.+++
T Consensus 83 k~~l~evEekyrkAMv~n------------------aQL-DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSN------------------AQL-DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELE 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHH------------------hhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777776666666541 111 2677778888888888888888877777777666666777
Q ss_pred HHHHHHHHHHHHHhhc
Q 005242 685 EYNCEYERLMAELKAL 700 (706)
Q Consensus 685 ~~~~~~~~l~~~~~~~ 700 (706)
..|..+..|-.|+..|
T Consensus 144 r~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 144 RQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666666554
No 202
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.73 E-value=3.1e+02 Score=26.31 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=28.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+..+.++...|..+..++.+.--++.-.+..+|.++.+...+|+.|-.++..
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666555555555566666666666666666555543
No 203
>PRK14140 heat shock protein GrpE; Provisional
Probab=24.72 E-value=1.1e+02 Score=31.50 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 672 LDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 672 l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
|..++..|+.|+.+++.+|.+++++++-
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN 69 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFEN 69 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666543
No 204
>PF15294 Leu_zip: Leucine zipper
Probab=24.72 E-value=1.7e+02 Score=31.95 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=29.1
Q ss_pred ccchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005242 643 LRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNC 688 (706)
Q Consensus 643 ~~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~ 688 (706)
+-.+++..|.+||.+|+.+-.-.++.-....-.-..|..+|.+.+.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999996665555544444444444444444333
No 205
>PF14645 Chibby: Chibby family
Probab=24.57 E-value=1.2e+02 Score=28.72 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=11.8
Q ss_pred hhhhhHHHHhHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEY 665 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~ 665 (706)
++...|.+||..|+-+|+=+
T Consensus 78 ~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655443
No 206
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=24.37 E-value=1.1e+02 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005242 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEY 686 (706)
Q Consensus 655 n~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~ 686 (706)
|.+|+.-|..+.++..+|..--+.|+.+++++
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~v 97 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQV 97 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 207
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.32 E-value=1.1e+02 Score=31.94 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=21.5
Q ss_pred ccchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 643 LRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 643 ~~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
+...+...|.++-. +.++.-.+|.-+...|..+.+.+++..++-..+
T Consensus 49 ~~~~~~~~l~~el~-------~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~ 95 (208)
T PRK14154 49 LEFPSREKLEGQLT-------RMERKVDEYKTQYLRAQAEMDNLRKRIEREKAD 95 (208)
T ss_pred ccCcchhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 333334444444555555555555444443333
No 208
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=24.16 E-value=1.9e+02 Score=28.94 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.++++=+|.|++..+...|++.-..-++|..+..+.+-.||..+
T Consensus 35 ~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l 78 (159)
T PF04949_consen 35 AFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVL 78 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999999999999999999999877
No 209
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.96 E-value=2.4e+02 Score=26.96 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 661 KCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 661 ~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.+-.+....++|..+...++.+|+..+.++..+..+|+
T Consensus 30 ~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 210
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=23.82 E-value=1.4e+02 Score=28.72 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 659 RAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 659 ~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
-.+|+=++.+--.+..|+--||++|+....+|..+..+|.++
T Consensus 29 e~rcl~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~ 70 (121)
T PF12507_consen 29 EQRCLLLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSC 70 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhh
Confidence 358999999999999999999999999999999999998877
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.47 E-value=3.1e+02 Score=25.74 Aligned_cols=46 Identities=26% Similarity=0.253 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 655 n~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++.|+++-.++|+.=.+|..++..|+.++.+.-.+=++|--|-..|
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777777666666665554443
No 212
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=23.35 E-value=2.8e+02 Score=26.16 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=42.3
Q ss_pred eeeccCC-CccccceEEEEEeCcccchh--hhhhcc-ccc-CccceeEEEEEec----CccC--CCCCcch--hcc-cHH
Q 005242 433 IGFLKDA-PHISIHGFNVYHKNRLILPF--WQVVSY-SYR-DSRGRGVVGVLEA----NFIE--PTHSKQD--FER-TSL 498 (706)
Q Consensus 433 ~Gflkea-~~~~~qGf~VY~nnRLI~~~--wrVg~q-~~~-~s~grGVIGVlea----nfle--PthnKQd--Fe~-t~~ 498 (706)
.||+..+ ...+...+++|-|||.|+.. .+...+ ++. -..|+.-+.+|.. ..++ ++-+|.. |.+ ...
T Consensus 35 ~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i 114 (127)
T cd03483 35 KGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEI 114 (127)
T ss_pred EEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHH
Confidence 5777542 12456789999999999821 111111 101 1245555555442 2333 2446665 544 467
Q ss_pred HHHHHHHHHHHH
Q 005242 499 FQKLETRLKEMT 510 (706)
Q Consensus 499 y~~Le~~L~e~l 510 (706)
+..+.+.+.+.|
T Consensus 115 ~~~i~~~v~~~L 126 (127)
T cd03483 115 IERIQKLVEDKL 126 (127)
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 213
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.21 E-value=2.1e+02 Score=23.10 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 655 NEKLRAKCLEYEK-RRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 655 n~~l~~~c~~~~~-~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
|..--.+|-+-.+ .+.+|..+++.|+.+.++.+.+.+.|-.|
T Consensus 12 Nr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 12 NREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444443322 33455556666666666665555555443
No 214
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.03 E-value=2.8e+02 Score=28.10 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 658 LRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 658 l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|..+-..++.--.+|..+...|+.|+++.+.+..-+..+++.|
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455566666667777766666666666666655
No 215
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.86 E-value=2.1e+02 Score=34.35 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005242 661 KCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALD 701 (706)
Q Consensus 661 ~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~~ 701 (706)
++.+.-..-++|..+++.+..|+......|++|..||..+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444556677777777777777888889999988773
No 216
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.71 E-value=3.4e+02 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMA 695 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~ 695 (706)
.++..|..|...|...+.++++.-..+..++.+|+.++++.+.-..+|.-
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888888888888888888887777665555443
No 217
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.65 E-value=1.5e+02 Score=35.43 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=20.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNC 688 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~ 688 (706)
...+|..||..||.+-+-.......|+.++.+|+.||..++.
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666554444444444444444444444433
No 218
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=22.59 E-value=2.5e+02 Score=26.36 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=41.6
Q ss_pred eeeccCCC--ccccceEEEEEeCcccchh--hhhhcc-ccc-CccceeEEEEEe--cC--ccC--CCCCcch--hcc-cH
Q 005242 433 IGFLKDAP--HISIHGFNVYHKNRLILPF--WQVVSY-SYR-DSRGRGVVGVLE--AN--FIE--PTHSKQD--FER-TS 497 (706)
Q Consensus 433 ~Gflkea~--~~~~qGf~VY~nnRLI~~~--wrVg~q-~~~-~s~grGVIGVle--an--fle--PthnKQd--Fe~-t~ 497 (706)
.||+..+. ..+....++|-|||.|... -+...+ +++ ...|+.-+.||. ++ .++ ++-+|.. |.+ ..
T Consensus 30 ~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~ 109 (123)
T cd03482 30 SGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRL 109 (123)
T ss_pred EEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCcEEEEEEEcChHheeeccCCCccEEEECCHHH
Confidence 58886432 3456889999999999821 111111 000 123554555544 32 233 2445665 444 45
Q ss_pred HHHHHHHHHHHHH
Q 005242 498 LFQKLETRLKEMT 510 (706)
Q Consensus 498 ~y~~Le~~L~e~l 510 (706)
.+..+...+.+.|
T Consensus 110 i~~~i~~~i~~~L 122 (123)
T cd03482 110 VHDFIYHAVKKAL 122 (123)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
No 219
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=22.56 E-value=2e+02 Score=38.69 Aligned_cols=54 Identities=31% Similarity=0.393 Sum_probs=44.4
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.-..|.+||..+..+|.||.+.-..|+..+..|+.+|.+.+.+..-..+|+..|
T Consensus 1230 sN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l 1283 (1822)
T KOG4674|consen 1230 SNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKL 1283 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777788888999998888888888888888888888888888888766
No 220
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=22.53 E-value=35 Score=34.35 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=25.1
Q ss_pred cccceEEEEEeCcccc-hhh-hhhcccccCccceeEEEE
Q 005242 442 ISIHGFNVYHKNRLIL-PFW-QVVSYSYRDSRGRGVVGV 478 (706)
Q Consensus 442 ~~~qGf~VY~nnRLI~-~~w-rVg~q~~~~s~grGVIGV 478 (706)
.+=-|||++..+-||+ ||. ++.+. ---.|+||.|-
T Consensus 51 ~nW~GFYl~~~~~LvLgPFqG~~acv--~I~~GkGVCg~ 87 (163)
T COG1956 51 VNWVGFYLLEGDELVLGPFQGKVACV--RIPFGKGVCGT 87 (163)
T ss_pred CceEEEEEecCCeEEEecccCCcceE--EeccCcchhHH
Confidence 4567999999999999 776 55443 34567777763
No 221
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.52 E-value=1.5e+02 Score=30.69 Aligned_cols=35 Identities=34% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 666 EKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 666 ~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.....+|..++..|+.++++++.+|.++.+|++-+
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~ 78 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENY 78 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.44 E-value=3.2e+02 Score=27.91 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYE 691 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~ 691 (706)
++..+..+|+.++++.+++++
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665
No 223
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.19 E-value=3.4e+02 Score=30.42 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=38.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+|...|.+|-++|++...+|.++-+|+..-..+--+.|..-+++.++|.+.++.+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777777777776666666666666666666666666665
No 224
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.14 E-value=1.8e+02 Score=31.57 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=23.0
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEY 686 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~ 686 (706)
..++..+..||+.|+.+-+|++.. ..++++|+.|..++
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~L 102 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRL 102 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 357777888888888877766543 33344444444333
No 225
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.11 E-value=1.5e+02 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYER 692 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~ 692 (706)
+|..+...+..|.+.+++..++
T Consensus 57 elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 57 DLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 226
>PRK12705 hypothetical protein; Provisional
Probab=22.05 E-value=2.4e+02 Score=33.36 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 651 LMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 651 l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|.+....|-.++..+++++++|..+.++|..+..+.+.+-+++..+|..+
T Consensus 86 l~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 86 LVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444557888888888888888888777777777766666666666554
No 227
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.58 E-value=1.3e+02 Score=30.47 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=7.4
Q ss_pred hhhhHHHHhHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEY 665 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~ 665 (706)
....|.++-..|..+-.++
T Consensus 21 ~~~~l~~~i~~le~e~~el 39 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAA 39 (176)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3344444433333333333
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.54 E-value=3.7e+02 Score=23.29 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
..+...-.+|+.|+.+-..++.+-...-....+|+.|++-.+.+.+.+.++
T Consensus 19 rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 19 RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.31 E-value=4.7e+02 Score=25.06 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=19.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSEL 683 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el 683 (706)
.++.+--|...|+.++..+++...+|...+-.|-.+.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666555555544444444333
No 230
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.29 E-value=2.5e+02 Score=31.09 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=19.0
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQ 674 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~ 674 (706)
+-..|..|=.+|..++..||..|++|..
T Consensus 175 EN~~LR~Ea~~L~~et~~~EekEqqLv~ 202 (306)
T PF04849_consen 175 ENEQLRSEASQLKTETDTYEEKEQQLVL 202 (306)
T ss_pred HHHHHHHHHHHhhHHHhhccHHHHHHHH
Confidence 5566777777777777777777776643
No 231
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.11 E-value=1.3e+03 Score=26.57 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=28.1
Q ss_pred CCCCcchhcc-cHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005242 486 PTHSKQDFER-TSLFQKLETRLKEMTWEYWDYHCELI 521 (706)
Q Consensus 486 PthnKQdFe~-t~~y~~Le~~L~e~l~~YW~~~~~~~ 521 (706)
-++=||-||+ -..-....+.|.++|.+|-+..+..-
T Consensus 46 ~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele 82 (395)
T PF10267_consen 46 AARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELE 82 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788997 57788888889999999988876643
No 232
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.83 E-value=71 Score=37.34 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 668 RRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 668 ~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.|.++++|+++|++||++.|++-+.|-..
T Consensus 25 ~~~~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 25 DDIDLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34456667777777777777776654443
No 233
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.65 E-value=3.2e+02 Score=32.95 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=49.1
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
-++...|.++=+.|..+|.+++.--+.|...+.++..|+++.+.+..+|..++.-.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899999999999999999999999999999999999998888643
No 234
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.49 E-value=2.2e+02 Score=29.61 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Q 005242 661 KCLEYEKRRVELDQKV----------TQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 661 ~c~~~~~~~~~l~~~~----------~~l~~el~~~~~~~~~l~~~~~ 698 (706)
+-.+++..|++|+.+- +.||.||.|.++.|+.|+..|-
T Consensus 50 el~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLP 97 (211)
T COG3167 50 ELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLP 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455666666666543 5689999999999999988763
No 235
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.27 E-value=2.4e+02 Score=31.03 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=22.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
...|+++=..+..+=.+..+.-.+|..+.+.|+.++++...+-..|.+|+..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444444444444444443
No 236
>PRK10780 periplasmic chaperone; Provisional
Probab=20.21 E-value=2.7e+02 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 005242 662 CLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 662 c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
+.++.+..++|+......+.||+
T Consensus 38 ~p~~k~~~~~le~~~~~~q~el~ 60 (165)
T PRK10780 38 VPQRTGVSKQLENEFKGRASELQ 60 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 237
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.08 E-value=2.3e+02 Score=24.92 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=29.1
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
+.....+..||..|+.++..+.+.=+++...+.++...++
T Consensus 35 ~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 35 PESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778899999999888877766666666666666554
Done!