Query 005242
Match_columns 706
No_of_seqs 309 out of 1438
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.7 3.8E-16 1.3E-20 176.4 21.3 95 142-239 25-145 (559)
2 1b63_A MUTL; DNA mismatch repa 99.7 4.2E-16 1.4E-20 165.9 18.3 103 130-240 8-119 (333)
3 2ioq_A Chaperone protein HTPG; 99.7 4E-16 1.4E-20 178.3 17.1 94 143-239 26-145 (624)
4 2o1u_A Endoplasmin; GRP94, HSP 99.7 9.8E-16 3.4E-20 175.9 16.9 94 144-240 45-167 (666)
5 3h4l_A DNA mismatch repair pro 99.6 2.2E-14 7.4E-19 155.0 21.8 102 130-239 9-119 (367)
6 3na3_A DNA mismatch repair pro 99.6 2.4E-14 8.2E-19 153.6 19.2 292 130-510 12-335 (348)
7 3nmq_A Heat shock protein HSP 99.6 4E-15 1.4E-19 152.2 8.6 97 142-241 37-157 (239)
8 1h7s_A PMS1 protein homolog 2; 99.6 6.9E-14 2.4E-18 150.9 18.4 103 130-240 18-129 (365)
9 3peh_A Endoplasmin homolog; st 99.5 9.7E-15 3.3E-19 152.4 9.8 97 142-241 44-165 (281)
10 3t0h_A Heat shock protein HSP 99.5 1.3E-14 4.4E-19 147.5 9.4 96 142-240 30-149 (228)
11 2cg9_A ATP-dependent molecular 99.5 4.1E-13 1.4E-17 154.4 21.5 94 144-240 26-143 (677)
12 3o0i_A HSP90AA1 protein; HSP90 99.5 1.8E-14 6.3E-19 148.6 9.0 95 143-240 59-177 (256)
13 2wer_A ATP-dependent molecular 99.5 3.5E-14 1.2E-18 142.8 6.6 94 143-239 25-142 (220)
14 1yc1_A HSP 86, heat shock prot 99.5 2.8E-14 9.7E-19 147.8 5.8 134 97-239 25-184 (264)
15 2ior_A Chaperone protein HTPG; 99.5 2.9E-14 1E-18 145.1 5.5 95 143-240 46-166 (235)
16 3ied_A Heat shock protein; HSP 99.5 1.1E-13 3.7E-18 142.7 9.8 67 167-236 119-197 (272)
17 2gqp_A Endoplasmin; GRP94, HSP 99.4 4.7E-14 1.6E-18 143.8 5.7 95 142-239 30-153 (236)
18 1qy5_A Endoplasmin; GRP94, NEC 99.4 7.8E-14 2.7E-18 145.0 5.3 93 145-240 29-150 (269)
19 1ei1_A DNA gyrase B, GYRB; ATP 99.1 8.1E-10 2.8E-14 120.3 15.9 111 122-239 12-137 (391)
20 1s16_A Topoisomerase IV subuni 99.1 3.1E-09 1.1E-13 115.6 19.4 107 122-239 13-134 (390)
21 4duh_A DNA gyrase subunit B; s 99.0 8.2E-10 2.8E-14 111.7 8.4 111 122-239 13-138 (220)
22 4emv_A DNA topoisomerase IV, B 98.9 1.6E-09 5.3E-14 110.1 7.9 121 108-239 8-142 (226)
23 3fv5_A DNA topoisomerase 4 sub 98.9 2.6E-09 8.7E-14 106.5 7.5 104 125-239 2-120 (201)
24 3cwv_A DNA gyrase, B subunit, 98.8 4.2E-08 1.4E-12 106.1 16.6 103 125-239 12-120 (369)
25 1kij_A DNA gyrase subunit B; t 98.8 5.5E-08 1.9E-12 105.8 17.6 110 122-239 11-135 (390)
26 3lnu_A Topoisomerase IV subuni 98.7 3.7E-08 1.3E-12 107.8 10.6 117 109-239 22-153 (408)
27 1zxm_A TOPO IIA ATPase, DNA to 98.7 1.6E-07 5.6E-12 102.5 14.5 91 143-238 51-156 (400)
28 3ttz_A DNA gyrase subunit B; p 98.4 3E-07 1E-11 91.5 5.8 98 124-239 12-111 (198)
29 1mu5_A Type II DNA topoisomera 98.3 2E-06 6.9E-11 95.7 10.3 98 143-240 31-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.2 3.1E-06 1E-10 95.6 9.0 98 143-240 30-136 (530)
31 1id0_A PHOQ histidine kinase; 98.1 2.5E-05 8.4E-10 70.9 11.1 88 144-239 44-134 (152)
32 1i58_A Chemotaxis protein CHEA 98.0 1.1E-05 3.8E-10 76.5 8.0 93 145-239 48-178 (189)
33 2q8g_A [pyruvate dehydrogenase 98.0 2.2E-05 7.4E-10 84.6 11.2 94 145-240 244-353 (407)
34 2btz_A Pyruvate dehydrogenase 98.0 2.2E-05 7.5E-10 84.1 11.1 93 146-240 233-340 (394)
35 2c2a_A Sensor histidine kinase 97.9 1.1E-05 3.9E-10 79.9 7.2 94 145-240 139-238 (258)
36 2e0a_A Pyruvate dehydrogenase 97.9 3E-05 1E-09 83.1 10.8 94 145-240 231-340 (394)
37 2q2e_B Type 2 DNA topoisomeras 97.9 9.5E-06 3.3E-10 93.1 7.2 97 143-240 36-141 (621)
38 1ysr_A Sensor-type histidine k 97.9 5E-05 1.7E-09 69.0 9.7 89 145-239 47-138 (150)
39 1bxd_A ENVZ(290-450), protein 97.9 3.2E-05 1.1E-09 71.3 8.5 89 145-239 48-139 (161)
40 3sl2_A Sensor histidine kinase 97.9 3.1E-05 1.1E-09 72.6 8.1 94 145-239 44-141 (177)
41 1gkz_A [3-methyl-2-oxobutanoat 97.9 3.1E-05 1.1E-09 82.7 9.1 95 143-239 237-362 (388)
42 4ew8_A Sensor protein DIVL; si 97.8 9.7E-05 3.3E-09 73.1 11.4 88 145-240 156-246 (268)
43 1y8o_A [pyruvate dehydrogenase 97.8 5.6E-05 1.9E-09 81.9 10.2 93 146-240 255-364 (419)
44 1pvg_A DNA topoisomerase II; G 97.8 6.3E-05 2.2E-09 82.7 9.7 89 144-237 64-167 (418)
45 3a0y_A Sensor protein; ATP-LID 97.7 9E-05 3.1E-09 66.8 9.1 85 145-237 48-136 (152)
46 1b3q_A Protein (chemotaxis pro 97.7 6.5E-05 2.2E-09 80.6 9.2 94 145-240 107-238 (379)
47 1r62_A Nitrogen regulation pro 97.7 5E-05 1.7E-09 69.0 7.1 87 145-238 49-148 (160)
48 1th8_A Anti-sigma F factor; SP 97.7 0.00013 4.3E-09 66.5 9.2 88 144-239 39-128 (145)
49 3d36_A Sporulation kinase B; G 97.7 0.00014 4.7E-09 70.5 9.5 89 144-239 123-214 (244)
50 3jz3_A Sensor protein QSEC; he 97.7 4.4E-05 1.5E-09 72.9 5.8 87 145-240 118-207 (222)
51 3ehg_A Sensor kinase (YOCF pro 97.4 0.00022 7.6E-09 63.8 6.8 72 145-237 41-115 (128)
52 3zxo_A Redox sensor histidine 97.3 0.00048 1.6E-08 60.8 8.0 70 144-238 43-115 (129)
53 3ehh_A Sensor kinase (YOCF pro 97.3 0.00074 2.5E-08 64.7 8.9 72 145-237 131-205 (218)
54 3zxq_A Hypoxia sensor histidin 97.2 0.0008 2.7E-08 59.1 7.4 72 143-239 38-112 (124)
55 3a0r_A Sensor protein; four he 97.0 0.00054 1.8E-08 69.9 5.4 86 144-237 244-333 (349)
56 4gfh_A DNA topoisomerase 2; to 96.3 0.0073 2.5E-07 74.0 9.0 88 144-236 59-161 (1177)
57 4fpp_A Phosphotransferase; fou 96.1 0.0069 2.4E-07 60.5 6.1 86 144-237 146-236 (247)
58 3ke6_A Protein RV1364C/MT1410; 91.2 0.34 1.2E-05 52.1 7.4 75 144-236 297-373 (399)
59 1ixm_A SPO0B, protein (sporula 90.0 0.27 9.3E-06 48.3 4.8 58 148-205 109-171 (192)
60 2jee_A YIIU; FTSZ, septum, coi 87.4 2 6.8E-05 37.1 7.8 53 646-698 27-79 (81)
61 3swy_A Cyclic nucleotide-gated 86.5 0.95 3.2E-05 35.2 4.8 30 671-700 2-31 (46)
62 3cvf_A Homer-3, homer protein 82.4 1.8 6.2E-05 37.2 5.2 51 650-700 3-53 (79)
63 3he5_B Synzip2; heterodimeric 79.7 7.1 0.00024 29.9 7.0 45 655-699 5-49 (52)
64 3swf_A CGMP-gated cation chann 79.7 1.8 6.3E-05 36.7 4.3 31 670-700 3-33 (74)
65 2v66_B Nuclear distribution pr 76.3 3.7 0.00013 37.4 5.5 54 647-700 4-61 (111)
66 3s4r_A Vimentin; alpha-helix, 74.3 12 0.00041 32.8 8.2 54 647-700 24-82 (93)
67 1gk4_A Vimentin; intermediate 72.6 15 0.0005 31.4 8.2 54 647-700 2-59 (84)
68 2yy0_A C-MYC-binding protein; 70.6 4.2 0.00014 32.3 3.9 32 644-675 17-48 (53)
69 3vem_A Helicase protein MOM1; 68.5 13 0.00046 33.9 7.2 48 646-699 39-86 (115)
70 3u06_A Protein claret segregat 66.8 13 0.00043 40.7 8.1 55 646-700 3-57 (412)
71 3brv_B NF-kappa-B essential mo 66.5 17 0.00059 30.4 6.9 47 650-696 23-69 (70)
72 3cve_A Homer protein homolog 1 65.2 19 0.00064 30.4 7.0 43 658-700 5-47 (72)
73 4etp_A Kinesin-like protein KA 63.9 15 0.00052 39.9 8.0 54 647-700 4-57 (403)
74 1go4_E MAD1 (mitotic arrest de 62.5 29 0.00099 31.0 8.1 56 646-701 12-95 (100)
75 2v71_A Nuclear distribution pr 62.3 17 0.00057 35.9 7.2 40 658-697 47-86 (189)
76 1ci6_A Transcription factor AT 61.9 27 0.00092 28.3 7.3 35 660-694 23-57 (63)
77 2w83_C C-JUN-amino-terminal ki 61.8 27 0.00091 29.8 7.3 51 644-694 7-57 (77)
78 3hnw_A Uncharacterized protein 60.6 28 0.00096 32.5 8.2 44 651-694 66-109 (138)
79 1wt6_A Myotonin-protein kinase 59.9 20 0.0007 30.8 6.4 44 646-689 31-74 (81)
80 3hnw_A Uncharacterized protein 59.7 30 0.001 32.3 8.2 54 647-700 69-122 (138)
81 1ci6_A Transcription factor AT 57.6 23 0.00078 28.8 6.1 36 652-687 22-57 (63)
82 3oja_B Anopheles plasmodium-re 54.9 19 0.00066 39.9 7.1 23 647-669 510-532 (597)
83 3u59_A Tropomyosin beta chain; 54.6 47 0.0016 29.1 8.2 51 647-697 24-74 (101)
84 1hjb_A Ccaat/enhancer binding 53.7 39 0.0013 29.4 7.3 9 674-682 57-65 (87)
85 3u1c_A Tropomyosin alpha-1 cha 53.5 50 0.0017 29.1 8.2 50 647-696 24-73 (101)
86 1hjb_A Ccaat/enhancer binding 53.5 25 0.00086 30.6 6.0 31 668-698 37-67 (87)
87 1x8y_A Lamin A/C; structural p 52.7 25 0.00087 30.2 6.0 36 665-700 26-61 (86)
88 1gu4_A CAAT/enhancer binding p 52.6 43 0.0015 28.5 7.3 55 646-700 14-69 (78)
89 2v66_B Nuclear distribution pr 52.1 54 0.0018 29.8 8.2 31 666-696 2-32 (111)
90 1t2k_D Cyclic-AMP-dependent tr 49.6 42 0.0014 26.8 6.5 28 671-698 26-53 (61)
91 2z5i_A TM, general control pro 49.2 56 0.0019 25.7 6.9 41 659-699 4-44 (52)
92 2zvf_A Alanyl-tRNA synthetase; 49.0 17 0.00058 34.1 4.7 52 647-698 5-56 (171)
93 1joc_A EEA1, early endosomal a 48.1 51 0.0018 30.0 7.6 47 653-699 4-50 (125)
94 3u59_A Tropomyosin beta chain; 46.1 71 0.0024 28.0 7.9 53 648-700 11-63 (101)
95 3he5_A Synzip1; heterodimeric 45.1 40 0.0014 25.6 5.1 39 646-684 10-48 (49)
96 3tnu_A Keratin, type I cytoske 44.4 76 0.0026 29.0 8.2 32 669-700 79-110 (131)
97 2ve7_A Kinetochore protein HEC 44.0 19 0.00066 37.8 4.6 50 645-694 184-233 (315)
98 3tnu_B Keratin, type II cytosk 44.0 78 0.0027 28.8 8.2 31 670-700 78-108 (129)
99 3u1c_A Tropomyosin alpha-1 cha 43.4 82 0.0028 27.7 7.9 53 648-700 11-63 (101)
100 2dfs_A Myosin-5A; myosin-V, in 42.4 40 0.0014 41.2 7.6 49 652-700 959-1010(1080)
101 2yy0_A C-MYC-binding protein; 42.2 25 0.00086 27.8 3.9 16 679-694 24-39 (53)
102 2l5g_B Putative uncharacterize 42.1 40 0.0014 25.7 4.7 32 669-700 4-35 (42)
103 3trt_A Vimentin; cytoskeleton, 41.9 1.1E+02 0.0038 25.1 8.2 40 661-700 36-75 (77)
104 1t2k_D Cyclic-AMP-dependent tr 41.8 68 0.0023 25.5 6.5 34 663-696 25-58 (61)
105 1ic2_A Tropomyosin alpha chain 40.8 1.2E+02 0.0039 25.6 8.2 48 652-699 26-73 (81)
106 2wt7_B Transcription factor MA 39.9 64 0.0022 28.3 6.5 41 660-700 48-88 (90)
107 2wt7_A Proto-oncogene protein 39.3 83 0.0028 25.3 6.7 23 671-693 34-56 (63)
108 1gu4_A CAAT/enhancer binding p 38.4 33 0.0011 29.3 4.3 33 655-687 38-70 (78)
109 2v71_A Nuclear distribution pr 37.5 1E+02 0.0034 30.5 8.2 54 647-700 57-114 (189)
110 1gk6_A Vimentin; intermediate 37.5 39 0.0013 27.0 4.5 27 672-698 5-31 (59)
111 3he5_B Synzip2; heterodimeric 37.3 94 0.0032 23.8 6.1 37 656-692 13-49 (52)
112 2wt7_A Proto-oncogene protein 36.9 99 0.0034 24.8 6.8 48 653-700 8-56 (63)
113 2efr_A General control protein 36.3 1.2E+02 0.004 29.0 8.3 53 647-699 78-130 (155)
114 3qh9_A Liprin-beta-2; coiled-c 36.2 1.5E+02 0.0051 25.5 7.9 54 646-699 19-79 (81)
115 3i00_A HIP-I, huntingtin-inter 36.2 1.2E+02 0.004 27.8 8.0 55 646-700 15-80 (120)
116 1gd2_E Transcription factor PA 35.6 68 0.0023 26.8 5.7 39 662-700 31-69 (70)
117 1jnm_A Proto-oncogene C-JUN; B 35.2 65 0.0022 25.8 5.4 48 653-700 7-55 (62)
118 2w83_C C-JUN-amino-terminal ki 34.6 34 0.0012 29.2 3.7 40 646-685 37-76 (77)
119 2jee_A YIIU; FTSZ, septum, coi 34.1 1.8E+02 0.0062 25.0 8.2 49 650-698 17-65 (81)
120 3mov_A Lamin-B1; LMNB1, B-type 32.5 81 0.0028 27.7 6.0 37 664-700 34-70 (95)
121 3m48_A General control protein 31.5 57 0.0019 23.6 3.9 24 671-694 4-27 (33)
122 3s9g_A Protein hexim1; cyclin 31.4 1.7E+02 0.0058 26.1 7.8 24 674-697 65-88 (104)
123 1kd8_B GABH BLL, GCN4 acid bas 31.4 84 0.0029 23.1 4.8 23 671-693 5-27 (36)
124 1kd8_B GABH BLL, GCN4 acid bas 30.6 1.1E+02 0.0038 22.5 5.3 29 657-685 5-33 (36)
125 3oja_B Anopheles plasmodium-re 30.1 1.1E+02 0.0038 33.7 8.2 52 647-698 531-582 (597)
126 1nkp_B MAX protein, MYC proto- 30.0 64 0.0022 27.1 4.8 30 671-700 51-80 (83)
127 3s9g_A Protein hexim1; cyclin 30.0 1.3E+02 0.0044 26.9 6.7 32 651-682 49-80 (104)
128 1kd8_A GABH AIV, GCN4 acid bas 29.8 98 0.0034 22.8 4.9 28 657-684 5-32 (36)
129 2xv5_A Lamin-A/C; structural p 29.7 92 0.0031 26.2 5.6 36 665-700 3-38 (74)
130 1kd8_A GABH AIV, GCN4 acid bas 29.6 1.2E+02 0.0041 22.3 5.3 29 670-698 4-32 (36)
131 3viq_B Mating-type switching p 29.5 25 0.00086 30.6 2.1 28 656-683 4-31 (85)
132 1ic2_A Tropomyosin alpha chain 29.4 2.3E+02 0.0078 23.7 8.2 51 649-699 9-59 (81)
133 3a7p_A Autophagy protein 16; c 29.3 1.7E+02 0.0057 28.0 7.9 22 645-666 67-88 (152)
134 2wq1_A General control protein 28.4 1E+02 0.0035 22.3 4.7 26 670-695 3-28 (33)
135 2dfs_A Myosin-5A; myosin-V, in 28.3 1.1E+02 0.0037 37.5 8.1 22 672-693 996-1017(1080)
136 2r2v_A GCN4 leucine zipper; co 28.2 1E+02 0.0035 22.4 4.7 28 670-697 4-31 (34)
137 1jnm_A Proto-oncogene C-JUN; B 27.6 65 0.0022 25.8 4.2 31 663-693 25-55 (62)
138 3q8t_A Beclin-1; autophagy, AT 27.4 1.8E+02 0.0061 25.4 7.3 44 646-689 11-54 (96)
139 3c3g_A Alpha/beta peptide with 27.0 83 0.0028 22.8 4.0 25 657-681 4-28 (33)
140 1fmh_A General control protein 27.0 71 0.0024 22.4 3.6 21 677-697 4-24 (33)
141 4b4t_K 26S protease regulatory 26.3 77 0.0026 34.6 5.9 51 650-700 39-89 (428)
142 3bas_A Myosin heavy chain, str 25.9 1.5E+02 0.0052 25.3 6.6 26 671-696 46-71 (89)
143 2oxj_A Hybrid alpha/beta pepti 25.8 1.2E+02 0.004 22.1 4.6 25 657-681 5-29 (34)
144 4ani_A Protein GRPE; chaperone 25.8 68 0.0023 32.2 4.9 20 678-697 70-89 (213)
145 3q0x_A Centriole protein; cent 25.8 1.5E+02 0.0052 30.0 7.4 52 648-699 173-224 (228)
146 4h22_A Leucine-rich repeat fli 25.0 2.8E+02 0.0095 24.9 8.1 55 646-700 23-77 (103)
147 2v0o_A FCHO2, FCH domain only 24.6 1.6E+02 0.0056 28.9 7.5 52 648-699 103-154 (276)
148 3m48_A General control protein 24.3 1E+02 0.0035 22.3 4.1 25 657-681 4-28 (33)
149 2q6q_A Spindle POLE BODY compo 23.8 2.4E+02 0.008 23.6 6.8 46 652-697 2-47 (74)
150 3c3f_A Alpha/beta peptide with 23.2 1.1E+02 0.0037 22.3 4.0 23 658-680 6-28 (34)
151 2aze_B Transcription factor E2 22.9 1.1E+02 0.0038 27.3 5.2 37 652-688 5-41 (106)
152 3a7p_A Autophagy protein 16; c 22.7 2.9E+02 0.0098 26.4 8.2 46 655-700 63-108 (152)
153 3htk_A Structural maintenance 22.5 2E+02 0.0067 22.4 6.1 29 671-699 16-44 (60)
154 3na7_A HP0958; flagellar bioge 22.1 2.4E+02 0.0081 28.3 8.2 51 646-696 90-140 (256)
155 3nmd_A CGMP dependent protein 22.1 3.6E+02 0.012 22.7 7.8 28 676-703 42-69 (72)
156 3azd_A Short alpha-tropomyosin 21.2 35 0.0012 25.1 1.3 28 670-697 7-34 (37)
157 1uo4_A General control protein 21.2 1.5E+02 0.005 21.7 4.4 23 671-693 5-27 (34)
158 3vmx_A Voltage-gated hydrogen 21.1 2.3E+02 0.008 22.1 5.9 38 646-683 4-41 (48)
159 3o0z_A RHO-associated protein 20.9 3.1E+02 0.011 26.5 8.2 30 670-699 93-122 (168)
160 1nkp_A C-MYC, MYC proto-oncoge 20.8 1E+02 0.0034 26.5 4.3 15 649-663 55-69 (88)
161 1uo4_A General control protein 20.8 1.4E+02 0.0049 21.7 4.3 25 657-681 5-29 (34)
162 1y6z_A Heat shock protein, put 20.7 1.4E+02 0.0048 30.7 6.2 62 444-510 70-132 (263)
163 3m9b_A Proteasome-associated A 20.5 95 0.0032 31.9 4.8 38 648-685 56-93 (251)
164 1nkp_A C-MYC, MYC proto-oncoge 20.4 1.2E+02 0.0042 25.9 4.9 30 671-700 56-85 (88)
165 2ke4_A CDC42-interacting prote 20.4 1.2E+02 0.0042 26.7 4.9 35 666-700 14-48 (98)
166 3a2a_A Voltage-gated hydrogen 20.2 2.5E+02 0.0084 22.6 6.0 40 645-684 10-49 (58)
167 1nlw_A MAD protein, MAX dimeri 20.1 1.2E+02 0.0042 25.6 4.7 17 672-688 59-75 (80)
168 2dgc_A Protein (GCN4); basic d 20.1 1.2E+02 0.0041 24.6 4.4 43 655-697 17-60 (63)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.70 E-value=3.8e-16 Score=176.44 Aligned_cols=95 Identities=25% Similarity=0.321 Sum_probs=74.0
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
..++..+|+|||+||+||..+ .+..+.|++..+. +...|.|.|||+||+.++|..+| ++|+|.+
T Consensus 25 Ysn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~ 102 (559)
T 1y4s_A 25 YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGT 102 (559)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHSCCSCCCC
T ss_pred CCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 345778999999999999731 1333444444432 34799999999999999999887 8998874
Q ss_pred C------------CCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 208 K------------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 208 ~------------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+ +...||+||+||+++ |.+|++|+|.||+.+
T Consensus 103 ~~f~e~l~~~~~~~~~~iG~fGvGfyS~-f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 103 KSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG 145 (559)
T ss_dssp CCTTCC--------CCCCSSCCCSGGGH-HHHEEEEEEEEECSS
T ss_pred HHHHHHhhccccccccccCCCCcchhhh-hhccCeEEEEEcCCC
Confidence 2 346889999999875 569999999999876
No 2
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.69 E-value=4.2e-16 Score=165.93 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=78.9
Q ss_pred cCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccc
Q 005242 130 VHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSD 206 (706)
Q Consensus 130 v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~ 206 (706)
++|.-.+..+.. -.++..||+|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++ +|++|+
T Consensus 8 L~~~~~~~I~agevi~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 8 LPPQLANQIAAGEVVERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CCHHHHHHHhcCCchhCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 344444444433 378999999999999998 78999888874 345789999999999999999988 777664
Q ss_pred cCC------CCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 207 KKS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 207 K~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
... ...+|.+|+||.+. ..++ +++|.||+.+.
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred ccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCC
Confidence 321 25789999998654 3344 89999998764
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.67 E-value=4e-16 Score=178.27 Aligned_cols=94 Identities=26% Similarity=0.337 Sum_probs=71.4
Q ss_pred cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC
Q 005242 143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK 208 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~ 208 (706)
.++..+|+|||+||+||..+ +++.+.|++..+ .+...|.|.|||+||+.++|..+| ++|+|.++
T Consensus 26 sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d--~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~ 103 (624)
T 2ioq_A 26 SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--KDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTK 103 (624)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHHHCC----
T ss_pred CChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEe--CCCcEEEEEECCCCCCHHHHHHHHHhhcccccH
Confidence 35668899999999999731 144344555443 234799999999999999999877 89988642
Q ss_pred ------------CCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 209 ------------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 209 ------------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+...||+||+||+++ +.++.+|+|.||+.+
T Consensus 104 ~f~~~l~~~~~~~~~~iG~fGvGfyS~-f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 104 SFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG 145 (624)
T ss_dssp -----------CCTTHHHHHHHHHHHH-HHHEEEEEEEEECTT
T ss_pred HHHHHhcccccccccccCCCCccHHHH-HhcCCeEEEEECCCC
Confidence 346789999999875 568999999999876
No 4
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.65 E-value=9.8e-16 Score=175.87 Aligned_cols=94 Identities=29% Similarity=0.413 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc--
Q 005242 144 WAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK-- 207 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K-- 207 (706)
++..+|+|||.||+||..+ .+..+.|.+..+ .+...|.|.|||+||+.++|..+| ++|+|.+
T Consensus 45 n~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d--~~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~ 122 (666)
T 2o1u_A 45 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSE 122 (666)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHTTC--------
T ss_pred CchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEe--CCCCEEEEEECCCCCCHHHHHHHHhhhcccccHH
Confidence 4557899999999999731 144445555543 235789999999999999999887 8888743
Q ss_pred -------------CCCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 208 -------------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 208 -------------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
.+...||+||+||+++ |.++.+|+|.||+.++
T Consensus 123 f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~~ 167 (666)
T 2o1u_A 123 FLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNND 167 (666)
T ss_dssp -----------------------CTTGGG-GGTEEEEEEEEECTTS
T ss_pred HHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCCC
Confidence 1335789999999977 6799999999998763
No 5
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.2e-14 Score=154.99 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred cCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhh-ccccc
Q 005242 130 VHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMS-FGFSD 206 (706)
Q Consensus 130 v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~-fG~S~ 206 (706)
+++...+..+.. ...|.+||.||||||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++. |.+|+
T Consensus 9 L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 9 INDIDVHRITSGQVITDLTTAVKELVDNSIDA---NANQIEIIFKD---YGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----CTHHHHHHHHCCSHHHHHHHHHHHHHHT---TCSEEEEEEET---TTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCHHHHHHhcCCCcccCHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 445555655544 378999999999999998 89999888852 4567999999999999999999884 55444
Q ss_pred cCC------CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 207 KKS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 207 K~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
... ..+.|.+|.||.+. ..++ +++|.||+.+
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTSP 119 (367)
T ss_dssp -------CCCCEEEETTHHHHHH-HHSS-EEEEEEESST
T ss_pred CCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEECC
Confidence 322 24568999998654 4566 7999999876
No 6
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=153.64 Aligned_cols=292 Identities=16% Similarity=0.219 Sum_probs=154.0
Q ss_pred cCchhhhccccC--CcCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccccc
Q 005242 130 VHPMFLHSNATS--HKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDK 207 (706)
Q Consensus 130 v~p~fL~Snsts--h~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K 207 (706)
+++...+..+.. ...|.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|
T Consensus 12 L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 12 LDETVVNRIAAGEVIQRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp CCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CCHHHHHhhcccCcccCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhccccccc
Confidence 444555555443 378999999999999998 88999988863 3556799999999999999999885444444
Q ss_pred -CC------CCccCccccchhhHHhhcCCeEEEEEeecCCcceeEEeeccchhhhcccCCCceeeeeeeeeecCCCCeee
Q 005242 208 -KS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVN 280 (706)
Q Consensus 208 -~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~~~t~svglLS~tfl~~~g~d~viVP~~~~e~~~~~Gt~v 280 (706)
.. ..++|.+|.||.+. ..++ +++|.||+.+.... |.+....|...
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si-~avs-~l~v~sr~~~~~~~--------------------------~~~~~~~G~~~ 137 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASI-SHVA-HVTITTKTADGKCA--------------------------YRASYSDGKLK 137 (348)
T ss_dssp CCCC---------CCTTCHHHHH-HHSS-EEEEEEECTTCSSE--------------------------EEEEEETTEES
T ss_pred cCcchhhhccccCCcCChHHHHh-hccc-EEEEEEEECCCCce--------------------------EEEEEeCCEEe
Confidence 22 25679999998544 3455 89999998774311 11111124321
Q ss_pred eecCcchhhhhhhhhhccCCCCCHHHHHHHhccccCCceEEEEEeccccCCCceeecCCCCcccccccCCccccCCCchh
Q 005242 281 ALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAF 360 (706)
Q Consensus 281 ~~~~~~~~~~~l~~IlkySPf~se~eLl~qf~~I~~hGT~III~nLw~~~~G~~ELdF~td~~DI~I~g~~~~~~~~~~~ 360 (706)
. .. .| .-..+||.|.|.||+.+.+.+.. |- +. .
T Consensus 138 ~--~~-------------~~------------~~~~~GTtV~v~~LF~n~P~R~k--~l--------k~---------~- 170 (348)
T 3na3_A 138 A--PP-------------KP------------CAGNQGTQITVEDLFYNIATRRK--AL--------KN---------P- 170 (348)
T ss_dssp S--CC-------------EE------------ECCCSEEEEEEESTTTTCHHHHH--TS--------CC---------H-
T ss_pred e--ee-------------eE------------ecCCCCcEEEECcccccCchhhh--hc--------cc---------c-
Confidence 0 00 01 01368999999999987533222 11 00 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhccCCCceEEEEcCeEeccccc--ccccCcchhhhccCCCccc---ccce----EEE
Q 005242 361 RQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNI--ANDLKYPEFILYRPQSAGC---LEGT----VIT 431 (706)
Q Consensus 361 ~~~~~~HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk~V~~~~i--~~~L~~~e~~~YkP~~~~~---v~~~----V~~ 431 (706)
...-.||. .-|+.|+ + +++--+|.++.+|+.+..... ..++...-...|....... +... -..
T Consensus 171 -~~e~~~i~----~~l~~~A-l--~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~ 242 (348)
T 3na3_A 171 -SEEYGKIL----EVVGRYS-V--HNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFK 242 (348)
T ss_dssp -HHHHHHHH----HHHHHHH-H--HCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEE
T ss_pred -HHHHHHHH----HHHHHHH-h--hCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeecCCccEE
Confidence 01112332 2344432 2 332247788888877532211 1122211112343322111 1111 023
Q ss_pred EeeeccCCC-ccccceEEEEEeCcccchh--hhhhcc-ccc-CccceeEEEEEe--cC--ccCC--CCCcch--hcc-cH
Q 005242 432 TIGFLKDAP-HISIHGFNVYHKNRLILPF--WQVVSY-SYR-DSRGRGVVGVLE--AN--FIEP--THSKQD--FER-TS 497 (706)
Q Consensus 432 t~Gflkea~-~~~~qGf~VY~nnRLI~~~--wrVg~q-~~~-~s~grGVIGVle--an--fleP--thnKQd--Fe~-t~ 497 (706)
..||+..+. ......+|+|-|||+|+.. .+...+ ++. ...|+.-+.||. ++ .+++ +-+|.. |.+ ..
T Consensus 243 i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~ 322 (348)
T 3na3_A 243 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEES 322 (348)
T ss_dssp EEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------
T ss_pred EEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHH
Confidence 567876432 2345678999999999822 122111 101 123445455543 33 2221 334554 665 57
Q ss_pred HHHHHHHHHHHHH
Q 005242 498 LFQKLETRLKEMT 510 (706)
Q Consensus 498 ~y~~Le~~L~e~l 510 (706)
++..+...+.+.|
T Consensus 323 i~~~i~~~v~~~l 335 (348)
T 3na3_A 323 ILERVQQHIESKL 335 (348)
T ss_dssp CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888776
No 7
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.56 E-value=4e-15 Score=152.16 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=75.4
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
+.+...+|+|||.||.||.++ ....+.|.+..+ .....|.|.|||.||++++|.++| ++|+|.+
T Consensus 37 Ys~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgt 114 (239)
T 3nmq_A 37 YSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPN--PQERTLTLVDTGIGMTKADLINNLGTIAKSGT 114 (239)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEe--CCccEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 345567899999999999753 112355666554 246899999999999999998776 7887653
Q ss_pred ----------CCCCccCccccchhhHHhhcCCeEEEEEeecCCc
Q 005242 208 ----------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 208 ----------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~ 241 (706)
.+...||+||+||+++ |.++.+|+|.||+.++.
T Consensus 115 k~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~~~ 157 (239)
T 3nmq_A 115 KAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHNDDE 157 (239)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTSC
T ss_pred hhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCCCc
Confidence 2457899999999987 67999999999987643
No 8
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.56 E-value=6.9e-14 Score=150.86 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=68.8
Q ss_pred cCchhhhccccCC--cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccc
Q 005242 130 VHPMFLHSNATSH--KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSD 206 (706)
Q Consensus 130 v~p~fL~Snstsh--~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~ 206 (706)
+++...+..+... .++..||.|||+||+|| +++.|.|.+.. ++...|.|.|||.||+++++..++ +|++|+
T Consensus 18 L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 18 IDRKSVHQICSGQVVLSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp -----------CEEECCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC------
T ss_pred CCHHHHHHhcCCCchhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 3444555555443 69999999999999998 78888888864 345789999999999999999988 676664
Q ss_pred cCC------CCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 207 KKS------KSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 207 K~~------~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
... ...+|.+|+||.+. ..++ +++|.||+.+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si-~~vs-~v~v~t~~~~~ 129 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSL-CALS-DVTISTCHASA 129 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHH-HHHS-EEEEEEECTTC
T ss_pred cccccchhcccccCCCCchhhhh-hhhc-cEEEEEccCCC
Confidence 322 13469999998654 3566 99999998764
No 9
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.54 E-value=9.7e-15 Score=152.35 Aligned_cols=97 Identities=25% Similarity=0.349 Sum_probs=75.6
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
+.+...+|+|||.||+||+++ ....+.|.|..+ .....|.|.|||.||+.++|..+| ++|+|.+
T Consensus 44 Ysn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d--~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgt 121 (281)
T 3peh_A 44 YTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN--KEKNILSITDTGIGMTKVDLINNLGTIAKSGT 121 (281)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHHHHHSCH
T ss_pred cCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEc--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhh
Confidence 344567899999999999852 112355666554 245799999999999999999877 7887753
Q ss_pred -----------CCCCccCccccchhhHHhhcCCeEEEEEeecCCc
Q 005242 208 -----------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDR 241 (706)
Q Consensus 208 -----------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~ 241 (706)
.+...||+||+||+++ |.+|.+|+|.||+.++.
T Consensus 122 k~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~~~ 165 (281)
T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNNDDE 165 (281)
T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTTSC
T ss_pred hhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCCCC
Confidence 2457899999999987 56999999999997643
No 10
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.53 E-value=1.3e-14 Score=147.48 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=75.9
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
+..+..+|+|||+||+||.++ ....+.|.+..+ .+...|.|.|||.||++++|..+| ++++|.+
T Consensus 30 Ys~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d--~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~ 107 (228)
T 3t0h_A 30 YSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPN--KQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 107 (228)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHTGGGSCHHHHH
T ss_pred cCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEe--CCeeEEEEEeCCCCCCHHHHHHHHHhhccccc
Confidence 345678899999999999753 112455666543 357899999999999999998877 8888764
Q ss_pred ----------CCCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 208 ----------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 208 ----------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
.+...||+||+||+++ +.++.+|+|.||+.+.
T Consensus 108 ~~f~~~l~~~~~~~~iG~fG~G~~S~-~~vad~v~V~Sr~~~~ 149 (228)
T 3t0h_A 108 KAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHNDD 149 (228)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS
T ss_pred hhhhhhhcccCCcccCCCCChhHHHH-hccCCEEEEEEecCCC
Confidence 2356899999999987 5699999999998763
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.1e-13 Score=154.42 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc--
Q 005242 144 WAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK-- 207 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K-- 207 (706)
+...+|+|||.||+||.++ .+..+.|.|..+ .+...|.|.|||+||+.++|..+| ++|+|.+
T Consensus 26 nkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d--~~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~ 103 (677)
T 2cg9_A 26 NKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--PEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKA 103 (677)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEE--GGGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHH
T ss_pred CchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEe--CCCCEEEEEECCCCCCHHHHHHHHHhHhccccHH
Confidence 3456899999999999852 233344555443 235789999999999999999887 8888843
Q ss_pred --------CCCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 208 --------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 208 --------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
.+...||+||+||++| |.++.+|+|.||+.++
T Consensus 104 f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~~ 143 (677)
T 2cg9_A 104 FMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD 143 (677)
T ss_dssp HHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTTS
T ss_pred HHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCCC
Confidence 1346899999999877 6799999999999874
No 12
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.51 E-value=1.8e-14 Score=148.64 Aligned_cols=95 Identities=26% Similarity=0.378 Sum_probs=75.7
Q ss_pred cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC
Q 005242 143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK 208 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~ 208 (706)
.....+|+|||+||+||.++ ....+.|++..+ .+...|.|.|||.||++++|..+| ++++|.++
T Consensus 59 s~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~ 136 (256)
T 3o0i_A 59 SNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPN--KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK 136 (256)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEc--CCceEEEEecCCCCcCHHHHHHHHHhhcccccc
Confidence 34567899999999999764 112456666654 357899999999999999998877 88887642
Q ss_pred ----------CCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 209 ----------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 209 ----------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
+...||+||+||+++ +.++.+|+|.||+.+.
T Consensus 137 ~f~~~L~~~~~~~~iG~fG~Gf~S~-f~Vadkv~V~Sr~~~~ 177 (256)
T 3o0i_A 137 AFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHNDD 177 (256)
T ss_dssp HHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS
T ss_pred chhhhhcccCCccccCCCcchHHHh-hccCCeEEEEEcCCCC
Confidence 457899999999987 5699999999998764
No 13
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.46 E-value=3.5e-14 Score=142.77 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=74.0
Q ss_pred cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc-
Q 005242 143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK- 207 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K- 207 (706)
..+..+|+|||+||+||.++ ....+.|.+..+ ++...|.|.|||.||++++|..+| ++|+|.+
T Consensus 25 s~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~--~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~ 102 (220)
T 2wer_A 25 SNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--PEQKVLEIRDSGIGMTKAELINNLGTIAKSGTK 102 (220)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEE--GGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHH
T ss_pred CCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEEC--CCCCEEEEEEcCCCCCHHHHHHHHHhHhcccch
Confidence 34568999999999999763 123445555543 346789999999999999998877 8888753
Q ss_pred ---------CCCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 208 ---------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 208 ---------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.+...||+||+||+++ +.+++++.|.||+.+
T Consensus 103 ~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 103 AFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (220)
T ss_dssp HHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence 2356899999999866 679999999999865
No 14
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.46 E-value=2.8e-14 Score=147.83 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=83.4
Q ss_pred CCCchhhhhhcccCCCcccCCcccccCCccccccC-chhhhcccc-CCcCHHHHHHHHHHhhhhHHhc------------
Q 005242 97 CPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVH-PMFLHSNAT-SHKWAFGAIAELLDNAIDEIQN------------ 162 (706)
Q Consensus 97 ~~~~~~~~fw~ag~~~~~~~~~~~~~~~~~~~~v~-p~fL~Snst-sh~~pfsAIaELVDNAiDA~~~------------ 162 (706)
|--..-|++|.++.-.... ....-.+++. ...|+-++. ....+..+|+|||+||+||.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~------~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~ 98 (264)
T 1yc1_A 25 LYDDDDKDRWGSDQPMEEE------EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL 98 (264)
T ss_dssp ------------------C------CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhhcCCCccccc------cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc
Confidence 4444667788887533210 0112223332 334444443 3457889999999999999762
Q ss_pred -CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC----------CCCccCccccchhhHHhhcCCe
Q 005242 163 -GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK----------SKSVIGQYGNGFKTSSMRLGAD 230 (706)
Q Consensus 163 -gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~----------~~~~IGrfG~GfKsAs~~LG~~ 230 (706)
..+.+.|.+..+ .+...|.|.|||.||+.++|..+| ++|+|.++ +...||+||+||+++. .++++
T Consensus 99 ~~~~~i~I~i~~d--~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f-~va~~ 175 (264)
T 1yc1_A 99 DSGKELHINLIPN--KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY-LVAEK 175 (264)
T ss_dssp GGCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHH-HHEEE
T ss_pred CCCCeEEEEEEEC--CCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccc-cCCCE
Confidence 125666776643 346789999999999999998877 89988642 3468999999999775 59999
Q ss_pred EEEEEeecC
Q 005242 231 VIVFSRHLN 239 (706)
Q Consensus 231 v~V~SK~~~ 239 (706)
|+|.||+.+
T Consensus 176 v~V~Sr~~~ 184 (264)
T 1yc1_A 176 VTVITKHND 184 (264)
T ss_dssp EEEEEECTT
T ss_pred EEEEEecCC
Confidence 999999865
No 15
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.46 E-value=2.9e-14 Score=145.08 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=74.7
Q ss_pred cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC
Q 005242 143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK 208 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~ 208 (706)
..+..||+|||+||+||.++ .++.+.|.+..+. +...|.|.|||.||+.++|..+| ++|+|.++
T Consensus 46 s~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~ 123 (235)
T 2ior_A 46 SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTK 123 (235)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHH
T ss_pred CCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHcccccc
Confidence 46778999999999999741 2444555555432 34679999999999999998876 89988642
Q ss_pred ------------CCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 209 ------------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 209 ------------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
+...+|+||+||+++ |.++++++|.||+.+.
T Consensus 124 ~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~ 166 (235)
T 2ior_A 124 SFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGE 166 (235)
T ss_dssp HHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTS
T ss_pred chhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCC
Confidence 245789999999976 7899999999998764
No 16
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=1.1e-13 Score=142.71 Aligned_cols=67 Identities=27% Similarity=0.490 Sum_probs=54.9
Q ss_pred EEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc-----------CCCCccCccccchhhHHhhcCCeEEEE
Q 005242 167 VIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK-----------KSKSVIGQYGNGFKTSSMRLGADVIVF 234 (706)
Q Consensus 167 V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K-----------~~~~~IGrfG~GfKsAs~~LG~~v~V~ 234 (706)
+.|.|..+ .....|.|.|||.||+.++|.++| ++++|.+ .+...||+||+||++| |.+|.+|+|.
T Consensus 119 l~I~I~~D--k~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV~V~ 195 (272)
T 3ied_A 119 LIIKIKPD--KEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRVEVY 195 (272)
T ss_dssp CCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEEEEE
T ss_pred cEEEEEEe--CCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEEEEE
Confidence 34666654 346789999999999999999887 7887752 2357899999999986 5699999999
Q ss_pred Ee
Q 005242 235 SR 236 (706)
Q Consensus 235 SK 236 (706)
||
T Consensus 196 Sk 197 (272)
T 3ied_A 196 TK 197 (272)
T ss_dssp EE
T ss_pred Ec
Confidence 99
No 17
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.44 E-value=4.7e-14 Score=143.75 Aligned_cols=95 Identities=28% Similarity=0.396 Sum_probs=69.6
Q ss_pred CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242 142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK 207 (706)
Q Consensus 142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K 207 (706)
...+..+|+|||+||+||.++ ....+.|.+..+ .+...|.|.|||.||+.++|..+| ++|+|.+
T Consensus 30 ys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d--~~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg~ 107 (236)
T 2gqp_A 30 YKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 107 (236)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHCC-----
T ss_pred cCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc--CCCCEEEEEECCcCCCHHHHHHHHhhhccccc
Confidence 345778999999999999752 123344555443 245789999999999999998877 8998854
Q ss_pred C---------------CCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 208 K---------------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 208 ~---------------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+ +...||+||+||+++ |.++.+|+|.||+.+
T Consensus 108 ~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~-f~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 108 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 153 (236)
T ss_dssp ----------------CHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred HhHHHHhhccccccccchhhcCCCCcchhhH-hhcCCEEEEEEeCCC
Confidence 2 224689999999875 679999999999875
No 18
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.42 E-value=7.8e-14 Score=144.96 Aligned_cols=93 Identities=29% Similarity=0.430 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc---
Q 005242 145 AFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK--- 207 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K--- 207 (706)
+..+|+|||+||+||.++ ....+.|.+..+ .+...|.|.|||.||+.++|..+| ++|+|.+
T Consensus 29 ~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d--~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F 106 (269)
T 1qy5_A 29 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEF 106 (269)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEc--CCceEEEEEECCCCCCHHHHHHHhhhhcccccHHH
Confidence 456899999999999752 123455665543 356799999999999999998877 8888742
Q ss_pred ------------CCCCccCccccchhhHHhhcCCeEEEEEeecCC
Q 005242 208 ------------KSKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 208 ------------~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~ 240 (706)
.+...||+||+||+++ |.++.+|+|.||+.++
T Consensus 107 ~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~~ 150 (269)
T 1qy5_A 107 LNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNND 150 (269)
T ss_dssp HHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTTS
T ss_pred HHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecCC
Confidence 2345789999999977 5699999999998763
No 19
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.11 E-value=8.1e-10 Score=120.30 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=83.3
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHH----
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEA---- 195 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee---- 195 (706)
-.+..|||.-|. |+-+.... ..+...|.||||||+||..+| |+.|.|.+.. + ..|.|.|||.||+.++
T Consensus 12 L~gle~vrkRPgmYiGst~~~-~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 12 LKGLDAVRKRPGMYIGDTDDG-TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp CCTTHHHHHCTHHHHCCSSSS-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---T--SCEEEEECSSCCCCSBCTTT
T ss_pred CchhHHHHcCCCeEECCCCCC-cCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---C--CEEEEEECCCCcccCccccc
Confidence 457899999987 44444332 268899999999999998777 8999888863 2 3899999999999987
Q ss_pred ----HHHhhh-ccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 196 ----MRRCMS-FGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 196 ----L~~~m~-fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+.-+|. +..++|.+ ..+.|..|+|+++.. .++..++|.|+..+
T Consensus 86 ~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vn-alS~~l~v~~~r~g 137 (391)
T 1ei1_A 86 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 137 (391)
T ss_dssp SSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred CcchHHHhheeccccCCcCCCcccccCCccccchHHHH-HhcCeEEEEEEeCC
Confidence 444563 44444422 346799999997554 68888999998754
No 20
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.08 E-value=3.1e-09 Score=115.62 Aligned_cols=107 Identities=25% Similarity=0.232 Sum_probs=81.6
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHH----
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEA---- 195 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee---- 195 (706)
-.+..|||.-|. |+-+... ...|.||||||+|+..+| |+.|.|.+.. + ..|.|.|||.||+.++
T Consensus 13 L~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~ 82 (390)
T 1s16_A 13 LTGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEE 82 (390)
T ss_dssp CCTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTT
T ss_pred cchhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---C--CEEEEEECCCCcCccccccc
Confidence 456899999887 5555544 578999999999987777 8999888863 2 2899999999999988
Q ss_pred ----HHHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 196 ----MRRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 196 ----L~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+..+| ++-.++|.+ ..+.|..|+|+++. -.++..++|.|+..+
T Consensus 83 ~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v-nalS~~l~v~~~r~g 134 (390)
T 1s16_A 83 GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV-NALSKRVEVNVRRDG 134 (390)
T ss_dssp CSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH-HHTEEEEEEEEEETT
T ss_pred CcchhhheeeeecccCCcCCCcccccCCccccchHHH-HHhhcccEEEEEECC
Confidence 66666 444444421 34679999999755 468889999998754
No 21
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.97 E-value=8.2e-10 Score=111.69 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=75.4
Q ss_pred cCCccccccCchh-hhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH---
Q 005242 122 QNGKNFLHVHPMF-LHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM--- 196 (706)
Q Consensus 122 ~~~~~~~~v~p~f-L~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL--- 196 (706)
-.+..|||.-|.+ +-+... ...+...|.||||||+|+..+| ++.|.|.+.. + ..|.|.|||.||+.+..
T Consensus 13 l~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---~--g~i~V~DnGrGIp~~~~~~~ 86 (220)
T 4duh_A 13 LKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEE 86 (220)
T ss_dssp --CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---T--SCEEEEECSSCCCCSEETTT
T ss_pred echhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---C--CcEEEEECCcCccccccccc
Confidence 4567999999875 444332 3578899999999999997665 8888888763 2 37999999999999863
Q ss_pred -----HHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 197 -----RRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 197 -----~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.-+| .+-.+.|.+ ..+.|..|+|++.. -.+...+.|.+++.+
T Consensus 87 ~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svv-NAlS~~l~v~v~r~g 138 (220)
T 4duh_A 87 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV-NALSQKLELVIQREG 138 (220)
T ss_dssp TEEHHHHHHHSTTCSSCCCTTC--------CCCHHHH-HHTEEEEEEEEEETT
T ss_pred CcchhhheeeecccCCCcCCCccccccCccceecchh-cccccceEEEEEECC
Confidence 3344 333333422 35679999999755 468889999998765
No 22
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.91 E-value=1.6e-09 Score=110.14 Aligned_cols=121 Identities=23% Similarity=0.238 Sum_probs=78.2
Q ss_pred ccCCCcccCCcccccCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEE
Q 005242 108 AGNYEDRLGSKATLQNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQ 185 (706)
Q Consensus 108 ag~~~~~~~~~~~~~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~ 185 (706)
+.+|+.. .-..-.+..|||.-|. |+-+.. ...+...|.||||||+|+..+| ++.|.|.+.. + ..|.|.
T Consensus 8 ~~~y~~~---~i~~l~~le~vr~RPgmYiGs~~--~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---~--g~i~V~ 77 (226)
T 4emv_A 8 INNYNDD---AIQVLEGLDAVRKRPGMYIGSTD--GAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---D--GSLTVQ 77 (226)
T ss_dssp ------------CCCBCTHHHHHCHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEE
T ss_pred hhcCChh---hcEEcchhHHHhhCCceEEcCCC--cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---C--CeEEEE
Confidence 3456652 2223457899999987 555543 3557788999999999997664 7878777653 2 379999
Q ss_pred ECCCCCCHHH-------HHHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 186 DDGGGMDPEA-------MRRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 186 DNG~GM~~ee-------L~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
|||.||+.+. +.-+| .+-.+.|.+ ..+.|..|+|++.. -.|...+.|.+++.+
T Consensus 78 DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svv-NALS~~l~v~v~r~g 142 (226)
T 4emv_A 78 DHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV-NALSSWLEVEITRDG 142 (226)
T ss_dssp ECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHH-HHTEEEEEEEEEETT
T ss_pred EcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhh-hhcccceEEEEEeCC
Confidence 9999999987 55556 344444422 45679999999755 468889999998765
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.87 E-value=2.6e-09 Score=106.51 Aligned_cols=104 Identities=25% Similarity=0.207 Sum_probs=64.8
Q ss_pred ccccccCchh-hhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH------
Q 005242 125 KNFLHVHPMF-LHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM------ 196 (706)
Q Consensus 125 ~~~~~v~p~f-L~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL------ 196 (706)
..+||.-|-+ +-+ ..+..+|.|||+||+||..+| |+.|.|.+.. + ..|.|.|||.||+.+++
T Consensus 2 le~vr~rpgmyig~-----~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---~--g~i~V~DnG~GIp~~~~~~~~~~ 71 (201)
T 3fv5_A 2 LEPVRRRPGMYTDT-----TRPNHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEEGVP 71 (201)
T ss_dssp CHHHHHCGGGTSCT-----TSTHHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTCSSB
T ss_pred chhhccCCccEECC-----CChhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---C--CEEEEEECCCCcCcccccccCcc
Confidence 4566666653 333 224789999999999998887 9999888752 2 38999999999999883
Q ss_pred --HHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 197 --RRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 197 --~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
..++ ..-.++|.+ ..+.|..|.|+++.. .++..++|.|++.+
T Consensus 72 ~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssin-alS~~l~v~t~~~g 120 (201)
T 3fv5_A 72 AVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDG 120 (201)
T ss_dssp HHHHHHHCC---------------------CHHHH-HTEEEEEEEEEETT
T ss_pred hhheeeeeeccccCcCCCcccccCcccceecchhh-cccceEEEEEEecC
Confidence 3433 333333321 246899999997654 68889999999765
No 24
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.84 E-value=4.2e-08 Score=106.12 Aligned_cols=103 Identities=14% Similarity=-0.020 Sum_probs=70.8
Q ss_pred ccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhc
Q 005242 125 KNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSF 202 (706)
Q Consensus 125 ~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~f 202 (706)
..+||.-|. |+-+... ..|..+|.||||||+||..++ |+.|.|.+.. +| .|.|.|||.||+. ++.- ..+
T Consensus 12 lE~vrkRPgmYiGs~~~--~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---~g--~I~V~DnGrGIp~-e~v~-~lh 82 (369)
T 3cwv_A 12 VENVRKRPGMYCGDVGE--YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---DG--SIALFCTSRTVTA-ENLV-RVA 82 (369)
T ss_dssp HHHHHHSTHHHHSCSSH--HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEEEESSCCH-HHHH-HHH
T ss_pred hHHHHhCCceEEcCCCC--chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---CC--EEEEEECCCCcCH-hHee-eee
Confidence 567777765 5555432 578899999999999987665 8999888863 23 8999999999999 4333 233
Q ss_pred cccccCCC----CccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 203 GFSDKKSK----SVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 203 G~S~K~~~----~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
.+ +|-+. ..-+.-| |+++. -.++..++|.|+..+
T Consensus 83 ag-sKf~~~~~~~~y~vsG-Gls~v-nalSs~l~v~t~r~g 120 (369)
T 3cwv_A 83 TG-AGFLGRPPGDGWGWDS-MLVVS-LALSSRYQVDIWADG 120 (369)
T ss_dssp TT-TTGGGSSCCCSTTTTS-SHHHH-HHTEEEEEEEEEETT
T ss_pred cC-CCcCCCcccccccccC-HHHHH-HHhhceEEEEEEECC
Confidence 32 33211 2233346 87544 467789999999764
No 25
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.84 E-value=5.5e-08 Score=105.79 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=80.2
Q ss_pred cCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH-
Q 005242 122 QNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR- 198 (706)
Q Consensus 122 ~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~- 198 (706)
-.+..+|+..|. |+-+.. ...+...|.|||+||+|+..++ ++.|.|.+.. + ..|.|.|||.||+.+++..
T Consensus 11 l~~le~vr~rpgmyiGs~~--~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---~--~~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 11 LKGLEGVRHRPAMYIGGTG--VEGYHHLFKEILDNAVDEALAGYATEILVRLNE---D--GSLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp CCTTHHHHHCTHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSEETTT
T ss_pred cchhHHHhcCCCcEEccCC--cchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---C--CEEEEEEcCCCCCHHHhhhc
Confidence 456789999887 554433 2456779999999999986554 6778887753 2 3899999999999998765
Q ss_pred -------hh-hccccccC----CCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 199 -------CM-SFGFSDKK----SKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 199 -------~m-~fG~S~K~----~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
+| .+-..+|. .....|.+|+|++.+ ..++..+.|.|+..+
T Consensus 84 ~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v-~als~~~~v~t~~~g 135 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV-NALSEWTVVEVFREG 135 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHH-HHTEEEEEEEEEETT
T ss_pred cccchhhheeeeeecccccCccccccCCCCCcceeee-cccccceEEEEecCC
Confidence 55 33333331 123568999999765 468888999999754
No 26
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.70 E-value=3.7e-08 Score=107.79 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=68.0
Q ss_pred cCCCcccCCcccccCCccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEE
Q 005242 109 GNYEDRLGSKATLQNGKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQD 186 (706)
Q Consensus 109 g~~~~~~~~~~~~~~~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~D 186 (706)
.+|++. .-..-.+..+||.-|- |+-+.. +...|.||||||+|+..+| ++.|.|.+.. + ..|.|.|
T Consensus 22 ~~Y~a~---~I~vL~glE~VRkRPgMYiGst~-----~~hlv~EivdNsiDea~ag~~~~I~V~i~~---d--gsI~V~D 88 (408)
T 3lnu_A 22 TRYNAA---DIEVLSGLDPVKRRPGMYTDTAR-----PNHLAQEVIDNSVDEALAGHAKQIEVTLYK---D--GSCEVSD 88 (408)
T ss_dssp ---------------CCHHHHHCGGGTSCTTS-----THHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEE
T ss_pred CCcCHh---HceeccccHHHhcCCccEECCCC-----cchhhHHHHHHHHHHhhcCCCceEEEEEeC---C--CeEEEEE
Confidence 357753 2333457889999876 555533 2678999999999997665 7888888752 2 3799999
Q ss_pred CCCCCCHHHH--------HHhh-hccccccCC----CCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 187 DGGGMDPEAM--------RRCM-SFGFSDKKS----KSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 187 NG~GM~~eeL--------~~~m-~fG~S~K~~----~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
||.||+.+.. .-+| .+-.+.|.+ ..+.|..|+|++.. -.|...+.|.+++.+
T Consensus 89 nGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svV-NALS~~l~v~v~rdG 153 (408)
T 3lnu_A 89 DGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVV-NALSTKVELFIKREG 153 (408)
T ss_dssp CSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHH-HHTEEEEEEEEEETT
T ss_pred cCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCcccccccee-hhccCeEEEEEEECC
Confidence 9999998763 3344 333333322 35679999999755 468899999999765
No 27
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.67 E-value=1.6e-07 Score=102.50 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHhhhhHH-hcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHH--------HHHhhh-ccccccCC--
Q 005242 143 KWAFGAIAELLDNAIDEI-QNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEA--------MRRCMS-FGFSDKKS-- 209 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~-~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee--------L~~~m~-fG~S~K~~-- 209 (706)
..+...+.||||||+|+. .++ ++.|.|.+..+ ...|.|.|||.||+.+. +.-+|. +-.++|.+
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~----~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE----NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC----CCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 467789999999999996 233 88888888742 26899999999999887 445553 33344421
Q ss_pred --CCccCccccchhhHHhhcCCeEEEEEeec
Q 005242 210 --KSVIGQYGNGFKTSSMRLGADVIVFSRHL 238 (706)
Q Consensus 210 --~~~IGrfG~GfKsAs~~LG~~v~V~SK~~ 238 (706)
..+.|..|+|++.. -.+...++|.++..
T Consensus 127 ~ykvSgGlhGvGlsvV-nAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 127 EKKVTGGRNGYGAKLC-NIFSTKFTVETASR 156 (400)
T ss_dssp GCCCCSCCSSCHHHHH-HHTEEEEEEEEEET
T ss_pred cccccCCccccceeee-EEeccceEEEEecC
Confidence 34779999999755 46889999999875
No 28
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.36 E-value=3e-07 Score=91.51 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=65.3
Q ss_pred CccccccCch-hhhccccCCcCHHHHHHHHHHhhhhHHhcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhh
Q 005242 124 GKNFLHVHPM-FLHSNATSHKWAFGAIAELLDNAIDEIQNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMS 201 (706)
Q Consensus 124 ~~~~~~v~p~-fL~Snstsh~~pfsAIaELVDNAiDA~~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~ 201 (706)
+..|||.-|. |+-+.. ...+...|.||||||+|+..+| ++.|.|.+..+ ..|.|.|||.||+.+.
T Consensus 12 ~le~vr~RPgmYiGs~~--~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~-----g~i~V~DnG~Gip~~~------ 78 (198)
T 3ttz_A 12 GLEAVRKRPGMYIGSTS--ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD-----NWIKVTDNGRGIPVDI------ 78 (198)
T ss_dssp HHHHHHHSHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG-----GEEEEEECSSCCCCSB------
T ss_pred chHHHhcCCCcEECCCC--CcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC-----CeEEEEECCCCccccc------
Confidence 4567777765 554432 3567889999999999987678 99999988742 3899999999999861
Q ss_pred ccccccCCCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242 202 FGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 202 fG~S~K~~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~ 239 (706)
...+.......+ |+ + ++.-.|...+.|.+++.+
T Consensus 79 h~~~~~~~~e~i--~t--~-SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 79 QEKMGRPAVEVI--LT--S-SVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp CTTTSSBHHHHH--HH--T-CHHHHTEEEEEEEEEETT
T ss_pred cCcCCCcccccc--ce--e-EehhhhcCeEEEEEEECC
Confidence 111111111111 22 2 233457788999998765
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.27 E-value=2e-06 Score=95.72 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=70.2
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCc--eEEEEEEeCC-CCCcCeEEEEECCCCCCHHHHHHhh-hccccccC-CCCccCccc
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAA--FVIVDKISNP-RDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK-SKSVIGQYG 217 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt--~V~I~i~~n~-~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~-~~~~IGrfG 217 (706)
..+..+|.|||+||+||...+.. .|.|.+.... .++...|.|.|||.||+.+++..++ .|..+++. .....|..|
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 110 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 110 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCce
Confidence 45677999999999998544321 6777776421 1245689999999999999999998 55455543 335668899
Q ss_pred cchhhHH---hhcCCe-EEEEEeecCC
Q 005242 218 NGFKTSS---MRLGAD-VIVFSRHLND 240 (706)
Q Consensus 218 ~GfKsAs---~~LG~~-v~V~SK~~~~ 240 (706)
+||..+. -.+|.+ +.|.|+..++
T Consensus 111 LGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 111 LGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp TTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred eeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 9986443 245556 9999987664
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.17 E-value=3.1e-06 Score=95.56 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=70.3
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCc--eEEEEEEeCC-CCCcCeEEEEECCCCCCHHHHHHhh-hccccccC-CCCccCccc
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAA--FVIVDKISNP-RDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK-SKSVIGQYG 217 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt--~V~I~i~~n~-~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~-~~~~IGrfG 217 (706)
..+..+|.|||+||+||...+.. .|.|.+.... .++...|.|.|||.||+++++..+| .|.++++. .....|..|
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 109 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 109 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCcc
Confidence 45677999999999998544321 5777765421 1245689999999999999999998 55455542 335678999
Q ss_pred cchhhHH---hhcCCe-EEEEEeecCC
Q 005242 218 NGFKTSS---MRLGAD-VIVFSRHLND 240 (706)
Q Consensus 218 ~GfKsAs---~~LG~~-v~V~SK~~~~ 240 (706)
+||..+. -.+|.+ +.|.|+..++
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred chHHHHHHHHHHhCCCceEEEEecCCC
Confidence 9986443 245566 9999987654
No 31
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.05 E-value=2.5e-05 Score=70.89 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
.+..+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+.+++.+.+..+++.+... +..|+||..+
T Consensus 44 ~l~~il~nLl~NAi~~---~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~ 115 (152)
T 1id0_A 44 DFVEVMGNVLDNACKY---CLEFVEISARQT--DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVA 115 (152)
T ss_dssp HHHHHHHHHHHHHHHH---CSSEEEEEEEEC--SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHh---CcCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHH
Confidence 3556899999999998 333677776653 4567899999999999999999986555443222 4568887533
Q ss_pred ---HhhcCCeEEEEEeecC
Q 005242 224 ---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~~ 239 (706)
.-.+|.++.+.+...+
T Consensus 116 ~~~~~~~gG~i~~~~~~~~ 134 (152)
T 1id0_A 116 REITEQYEGKIVAGESMLG 134 (152)
T ss_dssp HHHHHHTTCEEEEEECTTS
T ss_pred HHHHHHcCCEEEEEeCCCC
Confidence 2467999999887544
No 32
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.00 E-value=1.1e-05 Score=76.51 Aligned_cols=93 Identities=24% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhhHHh-----------cCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH-----------------
Q 005242 145 AFGAIAELLDNAIDEIQ-----------NGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM----------------- 196 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~-----------~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL----------------- 196 (706)
+..+|.+||+||+.+.. .....|.|.+... ++...|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~ 125 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 125 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcc
Confidence 45579999999999831 2345677776653 45678999999999999987
Q ss_pred -------HHhhhccccccCCCCccCccccchhhH---HhhcCCeEEEEEeecC
Q 005242 197 -------RRCMSFGFSDKKSKSVIGQYGNGFKTS---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 197 -------~~~m~fG~S~K~~~~~IGrfG~GfKsA---s~~LG~~v~V~SK~~~ 239 (706)
.++|..+++.+......+..|+||..+ .-.+|..+.|.+...+
T Consensus 126 ~~~~~~~~~if~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~ 178 (189)
T 1i58_A 126 LSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDK 178 (189)
T ss_dssp CCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTT
T ss_pred cchhhhHHHhcCCcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 556665555543222234568998633 2467899999887543
No 33
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.00 E-value=2.2e-05 Score=84.61 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhhHHhcCC------ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-------CC
Q 005242 145 AFGAIAELLDNAIDEIQNGA------AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-------KS 211 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gA------t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-------~~ 211 (706)
+..+|.+||+||+.+...+. ..|.|.+... ++...|.|.|+|.||+++++.+.|...++.+.. ..
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~ 321 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLG--NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAV 321 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCC
Confidence 34489999999999865443 2577777653 456789999999999999999999666555432 23
Q ss_pred ccCccccchhhH---HhhcCCeEEEEEeecCC
Q 005242 212 VIGQYGNGFKTS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 212 ~IGrfG~GfKsA---s~~LG~~v~V~SK~~~~ 240 (706)
..+-+|+||..+ .-.+|.++.|.|....+
T Consensus 322 ~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~G 353 (407)
T 2q8g_A 322 PLAGFGYGLPISRLYAQYFQGDLKLYSLEGYG 353 (407)
T ss_dssp CSSCTTCHHHHHHHHHHHTTCEEEEEEETTTE
T ss_pred CCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCc
Confidence 456789998533 34679999999986543
No 34
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.99 E-value=2.2e-05 Score=84.09 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhHHhcCC------ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC------CCcc
Q 005242 146 FGAIAELLDNAIDEIQNGA------AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS------KSVI 213 (706)
Q Consensus 146 fsAIaELVDNAiDA~~~gA------t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~------~~~I 213 (706)
..+|.+||+||+.+...+. ..|.|.+... ++...|.|.|+|.||+++++.++|...++.+.. ....
T Consensus 233 ~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~ 310 (394)
T 2btz_A 233 YHMLFELFKNAMRATVESHESSLILPPIKVMVALG--EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPL 310 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-----------
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC--CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCC
Confidence 3489999999999876654 2577777653 456789999999999999999999766655432 2335
Q ss_pred CccccchhhH---HhhcCCeEEEEEeecCC
Q 005242 214 GQYGNGFKTS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 214 GrfG~GfKsA---s~~LG~~v~V~SK~~~~ 240 (706)
+-+|+||..+ .-.+|.++.|.|....+
T Consensus 311 ~G~GLGL~i~~~i~~~~gG~i~v~s~~g~G 340 (394)
T 2btz_A 311 AGFGYGLPISRLYAKYFQGDLQLFSMEGFG 340 (394)
T ss_dssp ---CCHHHHHHHHHHHTTCEEEEEEETTTE
T ss_pred CCccCCHHHHHHHHHHhCCEEEEEecCCCc
Confidence 6689998533 34689999999986543
No 35
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.94 E-value=1.1e-05 Score=79.87 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhHHhcCC--ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-CCccCccccchh
Q 005242 145 AFGAIAELLDNAIDEIQNGA--AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFK 221 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gA--t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfK 221 (706)
+..+|..||+||+++...+. ..|.|.+... ++...|.|.|||.||+++++.+.|...++.+.. ....+-.|+||.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 216 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLA 216 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE--TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEecC--CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHH
Confidence 44589999999999743332 3466655432 456779999999999999999999555443322 222234689985
Q ss_pred hH---HhhcCCeEEEEEeecCC
Q 005242 222 TS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 222 sA---s~~LG~~v~V~SK~~~~ 240 (706)
.+ .-.+|.++.|.|...++
T Consensus 217 i~~~iv~~~gG~i~v~s~~~~G 238 (258)
T 2c2a_A 217 ITKEIVELHGGRIWVESEVGKG 238 (258)
T ss_dssp HHHHHHHHTTCEEEEEEETTTE
T ss_pred HHHHHHHHcCCEEEEEecCCCC
Confidence 33 34689999999886543
No 36
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.93 E-value=3e-05 Score=83.10 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhhHHhcCC------ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-------CC
Q 005242 145 AFGAIAELLDNAIDEIQNGA------AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-------KS 211 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gA------t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-------~~ 211 (706)
+..+|.+||+||+.+...+. ..|.|.+... ++...|.|.|+|.||+++++.++|...++.+.. ..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~ 308 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG--KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNA 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC--SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC--CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCC
Confidence 33489999999999875443 2577777653 456789999999999999999999666555432 23
Q ss_pred ccCccccchhhH---HhhcCCeEEEEEeecCC
Q 005242 212 VIGQYGNGFKTS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 212 ~IGrfG~GfKsA---s~~LG~~v~V~SK~~~~ 240 (706)
..+-+|+||..+ .-.+|.++.|.|....+
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~G 340 (394)
T 2e0a_A 309 PLAGFGYGLPISRLYAKYFQGDLNLYSLSGYG 340 (394)
T ss_dssp CSSCSSCHHHHHHHHHHHTTCEEEEEEETTTE
T ss_pred CCCCcccCHHHHHHHHHHhCCEEEEEecCCcc
Confidence 446689998533 34689999999976543
No 37
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.93 E-value=9.5e-06 Score=93.12 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC--CCCccCccc
Q 005242 143 KWAFGAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK--SKSVIGQYG 217 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~--~~~~IGrfG 217 (706)
..+..+|.|||+||+||...+ +..|.|.+..+ ..+...|.|.|||.||+.+++..+| .|.++++. .....|..|
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERT-GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCce
Confidence 456679999999999996532 22677766543 1134679999999999999999998 44444442 234568999
Q ss_pred cchhhHH---hhcCCe-EEEEEeecCC
Q 005242 218 NGFKTSS---MRLGAD-VIVFSRHLND 240 (706)
Q Consensus 218 ~GfKsAs---~~LG~~-v~V~SK~~~~ 240 (706)
+|+..+. -.+|.. +.|.|+..++
T Consensus 115 lGLsiv~~ls~~~gG~~I~V~S~~~gg 141 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKTSPT 141 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSSS
T ss_pred echhhhhHHHHHhCCCceeEEeeccCC
Confidence 9986443 233444 7888887653
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.88 E-value=5e-05 Score=69.03 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
+..+|.+||+||+.+. ....|.|.+... ++...|.|.|||.||+++++.+.+...++.... .-+-.|+||..+
T Consensus 47 l~~il~nLl~NA~~~~--~~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~ 120 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHG--GATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVA 120 (150)
T ss_dssp HHHHHHHHHHHHHHTT--CCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHH
Confidence 4568999999999973 233677766543 456789999999999999999998544432111 123468887533
Q ss_pred --HhhcCCeEEEEEeecC
Q 005242 224 --SMRLGADVIVFSRHLN 239 (706)
Q Consensus 224 --s~~LG~~v~V~SK~~~ 239 (706)
.-.+|.++.+.+...+
T Consensus 121 ~~~~~~gG~i~~~~~~~~ 138 (150)
T 1ysr_A 121 QQAQLHGGTASLENSPLG 138 (150)
T ss_dssp HHHHHTTCEEEEEECTTS
T ss_pred HHHHHcCCEEEEeecCCC
Confidence 3467899999887544
No 39
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.87 E-value=3.2e-05 Score=71.25 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh--
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT-- 222 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs-- 222 (706)
+..+|.+||+||+.+. ...|.|.+... ++...|.|.|||.||+.+++.+.+...++.+.... -+-.|+||..
T Consensus 48 l~~il~nll~NAik~~---~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~-~~g~GlGL~i~~ 121 (161)
T 1bxd_A 48 IKRAVANMVVNAARYG---NGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART-ISGTGLGLAIVQ 121 (161)
T ss_dssp HHHHHHHHHHHHHTTC---CSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC-CCCCSCCCCTTH
T ss_pred HHHHHHHHHHHHHhhc---CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC-CCCcccCHHHHH
Confidence 4558999999999973 55677777653 45678999999999999999999865555443222 2457888753
Q ss_pred -HHhhcCCeEEEEEeecC
Q 005242 223 -SSMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 -As~~LG~~v~V~SK~~~ 239 (706)
..-.+|.++.+.+...+
T Consensus 122 ~~~~~~gG~i~~~~~~~~ 139 (161)
T 1bxd_A 122 RIVDNHNGMLELGTSERG 139 (161)
T ss_dssp HHHHHHTSEEEEEEETTT
T ss_pred HHHHHcCCEEEEEECCCC
Confidence 33467899999887544
No 40
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.85 E-value=3.1e-05 Score=72.60 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccC-CCCccCccccchhhH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKK-SKSVIGQYGNGFKTS 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~-~~~~IGrfG~GfKsA 223 (706)
+..+|.+||+||+++... ...+.|.+.....++...|.|.|||.||+.+.+...+..+++... .....+..|+||..+
T Consensus 44 l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 122 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHH
Confidence 445899999999997432 234556553323455678999999999999999999855544332 122335679998633
Q ss_pred H---hhcCCeEEEEEeecC
Q 005242 224 S---MRLGADVIVFSRHLN 239 (706)
Q Consensus 224 s---~~LG~~v~V~SK~~~ 239 (706)
. -.+|..+.+.+...+
T Consensus 123 ~~~~~~~~G~i~i~~~~~~ 141 (177)
T 3sl2_A 123 KEMVQAHGGDIWADSIEGK 141 (177)
T ss_dssp HHHHHHTTCCEEEEEETTT
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 3 467888888887544
No 41
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.85 E-value=3.1e-05 Score=82.66 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=69.0
Q ss_pred cCHHHHHHHHHHhhhhHHhcCC-------ceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCC-----
Q 005242 143 KWAFGAIAELLDNAIDEIQNGA-------AFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSK----- 210 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gA-------t~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~----- 210 (706)
..+..+|.+||+||+.|...+. ..|.|.+... ++...|.|.|+|.||+++++.+.|...++.+...
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~ 314 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN--DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR 314 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC--SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC--CCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccc
Confidence 3455689999999999976543 2677777653 4567899999999999999999997666554321
Q ss_pred ----------------CccCccccchhhH---HhhcCCeEEEEEeecC
Q 005242 211 ----------------SVIGQYGNGFKTS---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 211 ----------------~~IGrfG~GfKsA---s~~LG~~v~V~SK~~~ 239 (706)
...+-+|+||..+ .-.+|.++.|.|....
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~ 362 (388)
T 1gkz_A 315 ISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGI 362 (388)
T ss_dssp -----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTT
T ss_pred cccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCC
Confidence 2235689998533 3468999999998654
No 42
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.82 E-value=9.7e-05 Score=73.08 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
+..+|.+||+||+++... ...|.|.+... ++...|.|.|||.||+++.+.+.+..+++.+. +-.|+||..+
T Consensus 156 l~~il~nLl~NA~~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~ 227 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPP-GGRVTLSARRA--LGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVK 227 (268)
T ss_dssp HHHHHHHHHHHHHHHSCT-TCEEEEEEEEC--SSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCEEEEEEEec--CCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHH
Confidence 456899999999998432 25677777653 46678999999999999999999965555443 3458887533
Q ss_pred --HhhcCCeEEEEEeecCC
Q 005242 224 --SMRLGADVIVFSRHLND 240 (706)
Q Consensus 224 --s~~LG~~v~V~SK~~~~ 240 (706)
.-.+|..+.|.+....+
T Consensus 228 ~~~~~~gG~i~i~s~~~~G 246 (268)
T 4ew8_A 228 ALVELHGGWVALESEPGNG 246 (268)
T ss_dssp HHHHHTTCEEEEEECTTSC
T ss_pred HHHHHcCCEEEEEecCCCC
Confidence 35689999998876443
No 43
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.80 E-value=5.6e-05 Score=81.89 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhhHHhcC-------CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCC-------CC
Q 005242 146 FGAIAELLDNAIDEIQNG-------AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKS-------KS 211 (706)
Q Consensus 146 fsAIaELVDNAiDA~~~g-------At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~-------~~ 211 (706)
..+|.+||+||+.+...+ ...|.|.+... ++...|.|.|+|.||+++++.++|...++.+.. ..
T Consensus 255 ~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~ 332 (419)
T 1y8o_A 255 FHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG--KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA 332 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCC
Confidence 348999999999986543 22577777653 456789999999999999999999665554432 22
Q ss_pred ccCccccchhhH---HhhcCCeEEEEEeecCC
Q 005242 212 VIGQYGNGFKTS---SMRLGADVIVFSRHLND 240 (706)
Q Consensus 212 ~IGrfG~GfKsA---s~~LG~~v~V~SK~~~~ 240 (706)
..+-+|+||..+ .-..|.++.|.|....+
T Consensus 333 ~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~G 364 (419)
T 1y8o_A 333 PLAGFGYGLPISRLYARYFQGDLKLYSMEGVG 364 (419)
T ss_dssp CC--CTTHHHHHHHHHHHTTCEEEEEEETTTE
T ss_pred CcCCeecCHHHHHHHHHHhCCEEEEEecCCCC
Confidence 345689998533 34679999999986543
No 44
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.76 E-value=6.3e-05 Score=82.66 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhhhhHH-hcC-CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHH--------hh-hccccccCC---
Q 005242 144 WAFGAIAELLDNAIDEI-QNG-AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRR--------CM-SFGFSDKKS--- 209 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~-~~g-At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~--------~m-~fG~S~K~~--- 209 (706)
-+...|.|+||||+|+. .+| ++.|.|.+..+ ...|+|.|||.||+.+.... +| .+-...|.+
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d----~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ 139 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE----EHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECC----CCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCc
Confidence 45668999999999986 323 78888888742 25899999999999765322 34 333334422
Q ss_pred -CCccCccccchhhHHhhcCCeEEEEEee
Q 005242 210 -KSVIGQYGNGFKTSSMRLGADVIVFSRH 237 (706)
Q Consensus 210 -~~~IGrfG~GfKsAs~~LG~~v~V~SK~ 237 (706)
...-|..|+|.+.+ =.|...+.|.++.
T Consensus 140 ykvSGGLhGVG~SvV-NALS~~l~V~v~r 167 (418)
T 1pvg_A 140 KKVTGGRNGYGAKLC-NIFSTEFILETAD 167 (418)
T ss_dssp CCCCSCCSSCHHHHH-HHTEEEEEEEEEE
T ss_pred eeccCCccceeeeee-eeccceEEEEEEE
Confidence 34569999998755 4688999999986
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.75 E-value=9e-05 Score=66.84 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSS 224 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs 224 (706)
+..+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+.+++.+.+..+++.+. +-.|+||..+.
T Consensus 48 l~~il~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~ 119 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICR 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCEEEEEEEEC--SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CCCEEEEEEEec--CCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHH
Confidence 44589999999999742 345677777653 45678999999999999999999865554432 34689986442
Q ss_pred ---h-hcCCeEEEEEee
Q 005242 225 ---M-RLGADVIVFSRH 237 (706)
Q Consensus 225 ---~-~LG~~v~V~SK~ 237 (706)
- .+|..+.+.+..
T Consensus 120 ~~~~~~~gg~~~~~~~~ 136 (152)
T 3a0y_A 120 KIIEDEHGGKIWTENRE 136 (152)
T ss_dssp HHHHTTTSCEEEEEEET
T ss_pred HHHHHhCCcEEEEecCC
Confidence 2 578888887763
No 46
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.73 E-value=6.5e-05 Score=80.58 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhHHh-----------cCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHH-----------------
Q 005242 145 AFGAIAELLDNAIDEIQ-----------NGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAM----------------- 196 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~-----------~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL----------------- 196 (706)
+..++.+||.||+++.. .....|.|.+... ++...|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~--~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE--TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 44579999999999831 1234566666543 46778999999999999988
Q ss_pred -------HHhhhccccccCCCCccCccccchh---hHHhhcCCeEEEEEeecCC
Q 005242 197 -------RRCMSFGFSDKKSKSVIGQYGNGFK---TSSMRLGADVIVFSRHLND 240 (706)
Q Consensus 197 -------~~~m~fG~S~K~~~~~IGrfG~GfK---sAs~~LG~~v~V~SK~~~~ 240 (706)
...|..|+|.+......+-.|+||. ...-.+|.++.|.|....+
T Consensus 185 ~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~G 238 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKG 238 (379)
T ss_dssp SCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETTTE
T ss_pred CCHHHHHHHhcCCCCccCCccCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCC
Confidence 5567777877655555666799984 3335789999999986554
No 47
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.73 E-value=5e-05 Score=68.96 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCC----------cCeEEEEECCCCCCHHHHHHhhhccccccCCCCccC
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDG----------TPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIG 214 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g----------~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IG 214 (706)
+..+|.+||+||+.+.......|.|.+... ++ ...|.|.|||.||+++++.+.+..+++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~--~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTA--FQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEE--EEEEETTEEEEEEEEEEEEEECTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEecc--ccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----C
Confidence 455899999999998543245676666542 22 467899999999999999999865555442 3
Q ss_pred ccccchhhHH---hhcCCeEEEEEeec
Q 005242 215 QYGNGFKTSS---MRLGADVIVFSRHL 238 (706)
Q Consensus 215 rfG~GfKsAs---~~LG~~v~V~SK~~ 238 (706)
-.|+||..+. -.+|.++.+.+...
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~~ 148 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWPG 148 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4688875332 46799999988653
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.69 E-value=0.00013 Score=66.50 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHhhhhHHhcC--CceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQNG--AAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~g--At~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
.+..+|.|||+||+.+...+ ...|.|.+... ++...|.|.|||.||+ ++.+.+...++.+. ..+..|+||.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~---~~~~~GlGL~ 111 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP---ELERSGMGFT 111 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC----------CCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCC---CCCCCcchHH
Confidence 45678999999999863221 35677777653 4567899999999999 77788755554432 2234699987
Q ss_pred hHHhhcCCeEEEEEeecC
Q 005242 222 TSSMRLGADVIVFSRHLN 239 (706)
Q Consensus 222 sAs~~LG~~v~V~SK~~~ 239 (706)
.+. ++...+.+.+...+
T Consensus 112 iv~-~~~~~i~~~~~~~~ 128 (145)
T 1th8_A 112 IME-NFMDEVIVESEVNK 128 (145)
T ss_dssp HHH-HHSSEEEEEEETTT
T ss_pred HHH-HHHheEEEEeCCCC
Confidence 665 45557877776544
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.66 E-value=0.00014 Score=70.50 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
.+..+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.+.+..+++.+. .+-.|+||..+
T Consensus 123 ~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~----~~g~GlGL~i~ 195 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG----VKGTGLGMMVV 195 (244)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG----GGCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCC----CCCcchhHHHH
Confidence 355689999999999732 345677766653 45678999999999999999999966655442 23468888533
Q ss_pred H---hhcCCeEEEEEeecC
Q 005242 224 S---MRLGADVIVFSRHLN 239 (706)
Q Consensus 224 s---~~LG~~v~V~SK~~~ 239 (706)
. -.+|..+.+.+...+
T Consensus 196 ~~i~~~~gG~i~~~~~~~~ 214 (244)
T 3d36_A 196 YRIIESMNGTIRIESEIHK 214 (244)
T ss_dssp HHHHHHTTCEEEEEEETTT
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 2 468999999887544
No 50
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.65 E-value=4.4e-05 Score=72.90 Aligned_cols=87 Identities=21% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhHH
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSS 224 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsAs 224 (706)
+..+|.+||+||+.+.. ....|.|.+.. ..|.|.|||.||+++++.+.+...++.+. ..-+-.|+||..+.
T Consensus 118 l~~il~nLl~NAi~~~~-~~~~i~i~~~~------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~g~GlGL~i~~ 188 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSP-QGSVVDVTLNA------DNFIVRDNGPGVTPEALARIGERFYRPPG--QTATGSGLGLSIVQ 188 (222)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCEEEEEECS------SEEEEECSCC----------------------------CTHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCeEEEEEcc------CeEEEEECCCCCCHHHHHHHHhhhccCCC--CCCCcccccHHHHH
Confidence 44589999999999732 23445555532 12999999999999999999965554331 11234688875332
Q ss_pred ---hhcCCeEEEEEeecCC
Q 005242 225 ---MRLGADVIVFSRHLND 240 (706)
Q Consensus 225 ---~~LG~~v~V~SK~~~~ 240 (706)
-.+|.++.|.|...++
T Consensus 189 ~i~~~~gG~i~i~s~~~~G 207 (222)
T 3jz3_A 189 RIAKLHGMNVEFGNAEQGG 207 (222)
T ss_dssp HHHHHTTCEEECCBCTTSS
T ss_pred HHHHHcCCEEEEEcCCCCc
Confidence 4689999998877665
No 51
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.42 E-value=0.00022 Score=63.75 Aligned_cols=72 Identities=15% Similarity=0.056 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
+..++.|||+||+.+ +++..|.|.+... ++...|.|.|||.||+++.+ +-.|+||..+
T Consensus 41 l~~il~nll~Na~k~--~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKH--SQAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS-----------------FSKGHGLLGMR 99 (128)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC-----------------CCCCccHHHHH
Confidence 456899999999997 3467788877653 45678999999999998765 2248887533
Q ss_pred --HhhcCCeEEEEEee
Q 005242 224 --SMRLGADVIVFSRH 237 (706)
Q Consensus 224 --s~~LG~~v~V~SK~ 237 (706)
.-.+|.++.+.|..
T Consensus 100 ~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHTTCEEEEECSS
T ss_pred HHHHHcCCEEEEEeCC
Confidence 24678888888876
No 52
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.35 E-value=0.00048 Score=60.83 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
.+..++.+||+||+.+. .+..|.|.+..+ ++ ..|.|.|||.||+++. .|+||..+
T Consensus 43 ~l~~il~nll~NA~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~ 97 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA--AASTLTVRVKVD--DD-LCIEVTDNGRGMPDEF--------------------TGSGLTNL 97 (129)
T ss_dssp HHHHHHHHHHHHCCCCS--SCCEEEEEEEES--SE-EEEEEEECCCCCTTTT--------------------CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCceEEEEEEEc--CC-EEEEEecCCCCCCccc--------------------CCcCHHHH
Confidence 46678999999999973 456788887764 34 7899999999999865 38887533
Q ss_pred ---HhhcCCeEEEEEeec
Q 005242 224 ---SMRLGADVIVFSRHL 238 (706)
Q Consensus 224 ---s~~LG~~v~V~SK~~ 238 (706)
.-.+|.++.+.+...
T Consensus 98 ~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 98 RQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHTTCEEEEEECTT
T ss_pred HHHHHHcCCEEEEeeCCC
Confidence 246889999988765
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.27 E-value=0.00074 Score=64.75 Aligned_cols=72 Identities=15% Similarity=0.043 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH-
Q 005242 145 AFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS- 223 (706)
Q Consensus 145 pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA- 223 (706)
++.++.+||+||+.+. ++..|.|.+... ++...|.|.|||.||+++.+ +-.|+|+..+
T Consensus 131 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~ 189 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS-----------------FSKGHGLLGMR 189 (218)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCC-------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHH
Confidence 4568999999999973 456788877653 45678999999999999876 2248887522
Q ss_pred --HhhcCCeEEEEEee
Q 005242 224 --SMRLGADVIVFSRH 237 (706)
Q Consensus 224 --s~~LG~~v~V~SK~ 237 (706)
.-.+|..+.|.|..
T Consensus 190 ~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 190 ERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHTTCEEEEECSS
T ss_pred HHHHHcCCEEEEeCCC
Confidence 24689999998876
No 54
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.0008 Score=59.13 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhh
Q 005242 143 KWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKT 222 (706)
Q Consensus 143 ~~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKs 222 (706)
..+..++.||++||+.+. .+..|.|.+... ++ ..|.|.|||.||+++. -|+|+..
T Consensus 38 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~~ 92 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA--NATSLAINVSVE--DD-VRVEVVDDGVGISGDI--------------------TESGLRN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCCEEEEEEEEE--EE-EEEEEEECCCSSCGGG--------------------SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEEEEeC--CC-EEEEEEECCCCCCccc--------------------cccCHHH
Confidence 345678999999999873 456787777654 34 7899999999999876 1788753
Q ss_pred H---HhhcCCeEEEEEeecC
Q 005242 223 S---SMRLGADVIVFSRHLN 239 (706)
Q Consensus 223 A---s~~LG~~v~V~SK~~~ 239 (706)
+ .-.+|.++.+.+...+
T Consensus 93 ~~~~~~~~gG~i~~~~~~~~ 112 (124)
T 3zxq_A 93 LRQRADDAGGEFTVENMPTG 112 (124)
T ss_dssp HHHHHHHHTCEEEEEECTTS
T ss_pred HHHHHHHhCCEEEEEEcCCC
Confidence 3 2468899999887653
No 55
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.02 E-value=0.00054 Score=69.93 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchhhH
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTS 223 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfKsA 223 (706)
.+..+|.+||+||+++.. .+..|.|.+... ++...|.|.|||.||+++.+.+.|..+++.+.. -.|+||..+
T Consensus 244 ~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~~--~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~-----g~GlGL~i~ 315 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----GTGLGLSIC 315 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC-TTCCEEEEEEEE--TTEEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCEEEEEEEec--CCEEEEEEEECCCCCChHHHhhcCCCCccCCCC-----CccchHHHH
Confidence 456689999999999842 345677766643 456789999999999999999999666655432 348887533
Q ss_pred H---h-hcCCeEEEEEee
Q 005242 224 S---M-RLGADVIVFSRH 237 (706)
Q Consensus 224 s---~-~LG~~v~V~SK~ 237 (706)
- - .+|..+.+.+..
T Consensus 316 ~~~v~~~~gg~i~~~~~~ 333 (349)
T 3a0r_A 316 RKIIEDEHGGKIWTENRE 333 (349)
T ss_dssp HHHHHHTTCSBCCEEECS
T ss_pred HHHHHHhCCCEEEEEeCC
Confidence 2 2 578888887763
No 56
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0073 Score=73.95 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhhhhHHhcC-C-ceEEEEEEeCCCCCcCeEEEEECCCCCCHHH--------HHHhh-hccccccCC---
Q 005242 144 WAFGAIAELLDNAIDEIQNG-A-AFVIVDKISNPRDGTPALLIQDDGGGMDPEA--------MRRCM-SFGFSDKKS--- 209 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~g-A-t~V~I~i~~n~~~g~~~L~I~DNG~GM~~ee--------L~~~m-~fG~S~K~~--- 209 (706)
-+.--+.|+||||+|...+| + +.|.|.+.. ....|+|.|||.||+-+- +.-+| .+-.+.|.+
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ 134 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 134 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSS
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCC
Confidence 35567899999999966555 3 678888763 145899999999998642 22334 233334422
Q ss_pred -CCccCccccchhhHHhhcCCeEEEEEe
Q 005242 210 -KSVIGQYGNGFKTSSMRLGADVIVFSR 236 (706)
Q Consensus 210 -~~~IGrfG~GfKsAs~~LG~~v~V~SK 236 (706)
..+-|..|+|.+.+- .|...+.|.+.
T Consensus 135 ykvSGGLHGVG~svVN-ALS~~~~vev~ 161 (1177)
T 4gfh_A 135 KKVTGGRNGYGAKLCN-IFSTEFILETA 161 (1177)
T ss_dssp CCCCSCCSSCHHHHHH-HTEEEEEEEEE
T ss_pred CeEeccCCChhhhHHh-hcCCceEEEEE
Confidence 345699999986543 47777766654
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.06 E-value=0.0069 Score=60.55 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHhhhhHHhcCCceEEEEEEeCCCCCcCeEEEEECCCC--CCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGG--MDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~gAt~V~I~i~~n~~~g~~~L~I~DNG~G--M~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
+...++..||+||++|...+ ..|.|..... ++...|.|.|+|.| |+++.+.+.+...++.+. +-.|+||.
T Consensus 146 ~~~qvl~NLl~NA~~a~~~g-g~I~v~~~~~--~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~-----~G~GLGLa 217 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAG-GVATVKGVAA--DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL-----GGPWVQAA 217 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTC-CEEEEEEEEE--TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-CeEEEEEEEE--CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC-----CCccHHHH
Confidence 35578999999999986544 3577776653 56788999999987 667666666643333331 12378874
Q ss_pred ---hHHhhcCCeEEEEEee
Q 005242 222 ---TSSMRLGADVIVFSRH 237 (706)
Q Consensus 222 ---sAs~~LG~~v~V~SK~ 237 (706)
...-..|.++.|.|..
T Consensus 218 i~~~iv~~hGG~i~v~s~~ 236 (247)
T 4fpp_A 218 YLNALVRAAGGQIAVEIGE 236 (247)
T ss_dssp HHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEEcC
Confidence 2335789999998753
No 58
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=91.19 E-value=0.34 Score=52.09 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhhhhHHhc--CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhccccccCCCCccCccccchh
Q 005242 144 WAFGAIAELLDNAIDEIQN--GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFK 221 (706)
Q Consensus 144 ~pfsAIaELVDNAiDA~~~--gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S~K~~~~~IGrfG~GfK 221 (706)
.+.-++.||+.||+..--. ....|.|.+...+ ++...|.|.|+|.|+++. + .-+.-|.|+.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~------~~~~~G~GL~ 359 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------D------GARGRGRGLA 359 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC----------------------------CHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------C------CCCCCCcHHH
Confidence 4566899999999997210 1356777776542 346789999999999875 1 1133488887
Q ss_pred hHHhhcCCeEEEEEe
Q 005242 222 TSSMRLGADVIVFSR 236 (706)
Q Consensus 222 sAs~~LG~~v~V~SK 236 (706)
.+. .++..+.+.+.
T Consensus 360 lv~-~l~~~~~~~~~ 373 (399)
T 3ke6_A 360 MAE-ALVSEARIMHG 373 (399)
T ss_dssp HHH-TTSSEEEEEEE
T ss_pred HHH-HHHHheeeEEC
Confidence 654 68888876544
No 59
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=90.02 E-value=0.27 Score=48.35 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhHHhc-----CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhhhcccc
Q 005242 148 AIAELLDNAIDEIQN-----GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFS 205 (706)
Q Consensus 148 AIaELVDNAiDA~~~-----gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m~fG~S 205 (706)
.+..|++||.+|+.+ ....|.|.+..+..++...|.|.|+|.|++.+.+.+.|.-|++
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 356788888888743 2466777776521145788999999999999998888865543
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.40 E-value=2 Score=37.11 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=48.1
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.++.+|+++|..|.++-.+.......|....++|+.|...|+.....|+..+.
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57888999999999999999999999999999999999999999999987653
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.54 E-value=0.95 Score=35.19 Aligned_cols=30 Identities=40% Similarity=0.578 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+|+.|+.+|++-|+-.+.++++|++|+.+-
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss 31 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999874
No 62
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.37 E-value=1.8 Score=37.23 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=39.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.|+.|+..+-.+-.+.|.+-++|+.+|+.|+.+|++.+.+-.++-.||+.+
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888889999999999999999999999999998888888765
No 63
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.68 E-value=7.1 Score=29.89 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 655 n~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
|.-||.+-..+.+-.-||+..+|+|++-|...+.+.++|.+|+.+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666767777777778888888888888888888765
No 64
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=79.67 E-value=1.8 Score=36.70 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++|+.|+.+|++-|+-.+.++++||+|+.+-
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss 33 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM 33 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999874
No 65
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.33 E-value=3.7 Score=37.43 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=34.3
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVEL----DQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l----~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
....|...|..|..+|.+|..+=++. .-.+..|..||.+.+.....|..-+.-|
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777665554443 3356667777777777776666655544
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.33 E-value=12 Score=32.80 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=41.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVE-----LDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~-----l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+.+|-++|..|..+-.++..++.. -...+..||.+|+.+..+-++|..|+..|
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999887776654332 24567788888988888888888888765
No 67
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=72.65 E-value=15 Score=31.45 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=41.2
Q ss_pred hhhhHHHHhHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEK----RRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~----~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++..|+..|..|.....+.|. .-+++..++..|+.+|.+++.+.++.+.|++.|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666554 356778888999999999999998888888765
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.65 E-value=4.2 Score=32.31 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=24.9
Q ss_pred cchhhhhHHHHhHHHHHHHHHHHHHhHHHHHH
Q 005242 644 RDSATIILMQENEKLRAKCLEYEKRRVELDQK 675 (706)
Q Consensus 644 ~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~ 675 (706)
...++..|++||..|+++|.++.++-+||..+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999998877666655544
No 69
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=68.51 E-value=13 Score=33.88 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=33.3
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
+|...|.-++.++ |--+|.+-.+|.. .++.|+||+++||..|+.|+.+
T Consensus 39 ~ELeRLr~~~d~~---~K~HE~kklqLks---e~e~E~ae~k~KYD~~lqe~es 86 (115)
T 3vem_A 39 HELEKLRRESENS---KKTFEEKKSILKA---ELERKMAEVQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666654 3345555555543 3788899999999999999874
No 70
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.75 E-value=13 Score=40.73 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=50.3
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+-.+|.+|...|+.++.++++.-+++......++.+|.+.+.+-++|-++++.+
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999999876
No 71
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=66.52 E-value=17 Score=30.44 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=29.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.|+|-|+.|+.+|+|+..=..--...-.=|...+.|++....+|..|
T Consensus 23 AlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 47888999999999995432222222233566677777766666543
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.19 E-value=19 Score=30.45 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 658 LRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 658 l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+.++-.+.|.+-++|+.+++.|+..|++.+.+-.++-.||+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888888999999999999999998888888887764
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.90 E-value=15 Score=39.91 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=48.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+..|++|...|+.+|.+++..-+++++....|+.+|.+.+.+-++|-++++.|
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999888765
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.53 E-value=29 Score=31.02 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=38.7
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKV----------------------------TQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~----------------------------~~l~~el~~~~~~~~~l~~~~ 697 (706)
.++..|+++-..|+++|..+++.-.+|+.++ ++.+.++++.+.+|++|-.-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666555554443 457888999999999998888
Q ss_pred hhcc
Q 005242 698 KALD 701 (706)
Q Consensus 698 ~~~~ 701 (706)
..|.
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 7764
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.30 E-value=17 Score=35.95 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 658 LRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 658 l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
|-++-...+++.++|..++.+|+.|+++|+.||.++-.|.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888899999999999999999999887773
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.86 E-value=27 Score=28.35 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 660 AKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 660 ~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
+++.+++...++|...-..|+.+++..+.++..|-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544443
No 77
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=61.80 E-value=27 Score=29.83 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=38.2
Q ss_pred cchhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 644 RDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 644 ~~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
.++++..|+.||.+|..-=..+.--.+.|-.++.+|..|-+-.+.++..+-
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357899999999999887777777777777777777777666665555443
No 78
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.60 E-value=28 Score=32.55 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 651 LMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 651 l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
|.-|=.+++.++.+++..=+++...+..|++||.+++-+++.+.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433344444444444433333333
No 79
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.85 E-value=20 Score=30.84 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=36.6
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCE 689 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~ 689 (706)
.+...++..|+.+..+--|++++-++|...+.+|+.++++.+..
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56778888888888888899999999999999999999886543
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.70 E-value=30 Score=32.34 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=31.1
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+...+.+++..|..+-.++++.-..|+....+++-++++++.+.+.|-.++..|
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777766666666555555555555555555555555554444433
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.58 E-value=23 Score=28.78 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYN 687 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~ 687 (706)
.++...|..++.+++..-.+|..++..|+.|+..++
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777766554
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.92 E-value=19 Score=39.88 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=10.2
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRR 669 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~ 669 (706)
+...+++....+..++.++++..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhh
Confidence 34444444444444444444433
No 83
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.61 E-value=47 Score=29.15 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=36.5
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.+..+..+.+.+..+|.+.+..-..|.-|++.|+.+++.++..+..+...|
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777888888888877777776665433
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.71 E-value=39 Score=29.39 Aligned_cols=9 Identities=56% Similarity=0.674 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 005242 674 QKVTQLKSE 682 (706)
Q Consensus 674 ~~~~~l~~e 682 (706)
.++.+|+.|
T Consensus 57 ~~v~~L~~E 65 (87)
T 1hjb_A 57 KKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 85
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.52 E-value=50 Score=29.12 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=36.0
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.+..+....+.+..+|.+.|.--..|.-|++.|+.+|+.++..+......
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777778888888888888777776655443
No 86
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.45 E-value=25 Score=30.58 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 668 RRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 668 ~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
++.++.+++..|+.|=++.+.+.++|-.|+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 87
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=52.71 E-value=25 Score=30.15 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 665 YEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 665 ~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|+..-+++..++..|+.||.+++.+.++.+.|++.|
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888888888888888888877765
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.65 E-value=43 Score=28.49 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=36.9
Q ss_pred hhhhhHHHHhHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLE-YEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~-~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.++..-..-|..--.+|-+ -..++.++.+++..|+.|=+..+.+...|-.|+..|
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556555555544 345677777777777777777777777777777766
No 89
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.14 E-value=54 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 666 EKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 666 ~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
||++++|..+..+|+.|+++|+.||.+.-.|
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655443
No 90
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.62 E-value=42 Score=26.76 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
+|..++..|+.+-.+.+.+...|-.|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 91
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=49.20 E-value=56 Score=25.70 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 659 RAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 659 ~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
-.+-+.-|.+-+.|...+..|+-+|...+.+|+.+-.+|..
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556678888999999999999999999999999999875
No 92
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.95 E-value=17 Score=34.10 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=37.6
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
-+.++.++...|..-|..+.....+|..++++|..|+.+.+++.++|..++-
T Consensus 5 A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 5 AIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp GTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888777766567777777777777777777777766544
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.15 E-value=51 Score=30.02 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 653 QENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 653 ~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.|-.+|.++|+.-|.--..|..++.+|+..|++...-...|-.+.++
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~ 50 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQS 50 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46678888898888877888888888888888776665555444333
No 94
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.09 E-value=71 Score=27.97 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=42.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
...|+.|......+..+++..-++++.+..++..|+...++++..|-.++..+
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888888888888888888888888888877643
No 95
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.13 E-value=40 Score=25.55 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=23.8
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
++...|..||.-|+.+-+.-...-.-|+..+.+||+.||
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 566677778877777666544444444555555555554
No 96
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.38 E-value=76 Score=28.99 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 669 RVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 669 ~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
-+++..++..|+.+|.+++.+.++.+.|++.|
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999888888765
No 97
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.01 E-value=19 Score=37.82 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=37.0
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
..+...|.++|..|.++|.++|+....+..--.+...+|++....|+++|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRL 233 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 46788999999999999999987766655543555556777777776554
No 98
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.98 E-value=78 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+++..++..|+.+|.+++.+.++.+.|++.|
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999998888766
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.42 E-value=82 Score=27.69 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=41.6
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
...|+.|......+..+++..-++++.+..+++.|+...+++...|-.+|..+
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777888888888888888888888888888888888887777654
No 100
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.43 E-value=40 Score=41.24 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 652 MQENEKLRAKCLEYEKRRVE---LDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~---l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.+|..+|+.+-.++++.++| ++.++.+|+.|+++.+.++..+..|.+.+
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433344444433 34566677777777777777777776654
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.16 E-value=25 Score=27.80 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 005242 679 LKSELGEYNCEYERLM 694 (706)
Q Consensus 679 l~~el~~~~~~~~~l~ 694 (706)
|+.|+++.+.+|+.|.
T Consensus 24 Lk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 102
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.15 E-value=40 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 669 RVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 669 ~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
-.+|.||+++.-.||+.++.+...|-.-++.|
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999998888888877666655
No 103
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.94 E-value=1.1e+02 Score=25.08 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 661 KCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 661 ~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++.++...-..-...+...+.||-+.++.+.+|-.||.++
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333445567889999999999999999876
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.78 E-value=68 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 663 LEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 663 ~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.+++..-.+|...-..|+.++...+.+..+|-..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555443
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.84 E-value=1.2e+02 Score=25.56 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.........++.+.+.--..|.-|++.|+.+|+.++..+......|..
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555567777888888888888777777766654
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.90 E-value=64 Score=28.27 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 660 AKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 660 ~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.++.++|..-.+|...+.+|+.|+.++..+-..+-..+.+|
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666777776666666666555555544
No 107
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.33 E-value=83 Score=25.30 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l 693 (706)
+|...-..|+.+|...+.++..|
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333443333333333
No 108
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=38.38 E-value=33 Score=29.25 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005242 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEYN 687 (706)
Q Consensus 655 n~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~ 687 (706)
...+..++.++++.-..|..++++|+.|+...+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444
No 109
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.53 E-value=1e+02 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=32.9
Q ss_pred hhhhHHHHhHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 647 ATIILMQENEKLRAKCLEYEKR----RVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~----~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
....|...|..|..+|.++..+ -+|....+..|..||.+.+.....|..-+..|
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777776665333 33334446777777777777776666665544
No 110
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.51 E-value=39 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 672 LDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 672 l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
+..++..|+.+|.+++.+.++.+.|++
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq 31 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVG 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 111
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.32 E-value=94 Score=23.79 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 656 EKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYER 692 (706)
Q Consensus 656 ~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~ 692 (706)
..|+..-+++|.-|+.|+.-+.+||.||...+.+.++
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555677888999999999999999988877543
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.90 E-value=99 Score=24.85 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 653 QENEKLRAKCLEYEK-RRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 653 ~en~~l~~~c~~~~~-~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+-|..--.+|-.-.+ .-.+|..++..|..+-.+.+.+...|-.|+..|
T Consensus 8 erNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 8 ERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445543222 234555666666666666666666666665544
No 113
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.29 E-value=1.2e+02 Score=29.01 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=41.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+..|...-+..-.++..-|.+-+.|...+..|+-+|..++.+|+.+..+|..
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665666667777778888888889999999999999999999887764
No 114
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.21 E-value=1.5e+02 Score=25.54 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=34.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 646 SATIILMQENEKLRAKCLEYE-------KRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~-------~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
+.+.-|.||=..||-+-.|.| ++=+--+-.+..|+.+|+.-..+.++|-.+|.+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 445567777777776665544 333333344566777777777777777777653
No 115
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.19 E-value=1.2e+02 Score=27.79 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=35.0
Q ss_pred hhhhhHHHHhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEY----EKRRVELDQKVTQLKSELGEYNC-------EYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~----~~~~~~l~~~~~~l~~el~~~~~-------~~~~l~~~~~~~ 700 (706)
..+..|+.|...|+.+-..+ ...-.+|.-.+.+|+.||++.+. ++.+|-.|+..+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666554433 22234677777778888877764 478888888766
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.61 E-value=68 Score=26.79 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=22.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 662 CLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 662 c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+.++|..-.+|....+.|..|.+..+.+...|..|+..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555566666666666666666554
No 117
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.18 E-value=65 Score=25.77 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 653 QENEKLRAKCLEYE-KRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 653 ~en~~l~~~c~~~~-~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+-|..--.+|-+-. ....+|..++..|+.+-.+.+.+...|-.|+..|
T Consensus 7 ~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 7 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555665433 2356777788888888888888888888887766
No 118
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.56 E-value=34 Score=29.20 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=25.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGE 685 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~ 685 (706)
....+|..|+..|+.++.-....-+.++.++..|+.||..
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888887777643
No 119
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.05 E-value=1.8e+02 Score=24.98 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
.+.+.-..|+++-.|++.+-..|.+..+.++..-+....+..+|-.|..
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445556677888888888888888888866655555555555555543
No 120
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.48 E-value=81 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 664 EYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 664 ~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.|...-.++..++..|+.+|.+++.+.++.+.|++.|
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777888888888887777777777654
No 121
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.54 E-value=57 Score=23.64 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLM 694 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~ 694 (706)
||+.||.+|-.+-.+.+.+-++|-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444444444444444444444443
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.39 E-value=1.7e+02 Score=26.10 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 674 QKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 674 ~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.++..|..|++..+.+-.+|+.|-
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666653
No 123
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.38 E-value=84 Score=23.13 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l 693 (706)
||+-||.+|-.+..+.+.+-++|
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444444444444444444333
No 124
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.64 E-value=1.1e+02 Score=22.47 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELGE 685 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~~ 685 (706)
+|..+-+|+-..-.+|+.+|.+|+.-|.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 56666666666666666666666665544
No 125
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.14 E-value=1.1e+02 Score=33.69 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=34.8
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 647 ATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 647 ~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
++...+++-++|+.++.+.|+.-++-+.+..+|+.|++.++++.++|+.++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555555677777777777777777777777777777777776653
No 126
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.05 E-value=64 Score=27.05 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+|...++.|+.|+++.+.+-..|.+.|.+|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556666666666666666554
No 127
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.03 E-value=1.3e+02 Score=26.91 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005242 651 LMQENEKLRAKCLEYEKRRVELDQKVTQLKSE 682 (706)
Q Consensus 651 l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~e 682 (706)
+..||..|++.-.++-.+-.+|..++.+|+.|
T Consensus 49 le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 49 MEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 33344444444333344444444444444443
No 128
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.84 E-value=98 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
+|-.+-+|+...-.+|+..|.+|+..|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444444444444445555555544443
No 129
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.70 E-value=92 Score=26.20 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 665 YEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 665 ~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+..-.+++..++..|+.||.+++.+.++.+.|++.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.56 E-value=1.2e+02 Score=22.32 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELK 698 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~ 698 (706)
+||+-||.+|-++-.+.+.+-++|-..+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56677777776666666666666655543
No 131
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.45 E-value=25 Score=30.57 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005242 656 EKLRAKCLEYEKRRVELDQKVTQLKSEL 683 (706)
Q Consensus 656 ~~l~~~c~~~~~~~~~l~~~~~~l~~el 683 (706)
..|++++.+++....+|+..+++++.+|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666544
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.43 E-value=2.3e+02 Score=23.70 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=31.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 649 IILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 649 ~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
..|..|-.....+..+.+..-++.+....+++.|+...+++...|-.+|..
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666666666666677777777777777666654
No 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.35 E-value=1.7e+02 Score=28.00 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=15.0
Q ss_pred chhhhhHHHHhHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYE 666 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~ 666 (706)
...+..|..|...|+.+|.+++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776665
No 134
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.38 E-value=1e+02 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMA 695 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~ 695 (706)
+||+-||.+|-++..+.+.+-++|-.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666666555555555555543
No 135
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.29 E-value=1.1e+02 Score=37.50 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005242 672 LDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 672 l~~~~~~l~~el~~~~~~~~~l 693 (706)
|....+++.+|.++.+.++.+|
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 136
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.24 E-value=1e+02 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
+||+-|+.+|-++....+.+.++|..-|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5666666666666666666666665433
No 137
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.61 E-value=65 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 663 LEYEKRRVELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 663 ~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l 693 (706)
.+++..-.+|...-..|+.++...+.+...|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445554444444444
No 138
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.43 E-value=1.8e+02 Score=25.41 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=26.0
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCE 689 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~ 689 (706)
.+...|.+|=..|..+-.++|+-+..|...+..|+.|++....+
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 34555666666666666666666666666666665555554443
No 139
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.03 E-value=83 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKS 681 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~ 681 (706)
+|-.+|+|+-..-.+|+..|.+|+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555555443
No 140
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=26.95 E-value=71 Score=22.45 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005242 677 TQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 677 ~~l~~el~~~~~~~~~l~~~~ 697 (706)
.+|++|..+++.+--+|..|+
T Consensus 4 aqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444443
No 141
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.25 E-value=77 Score=34.64 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=23.6
Q ss_pred hHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 650 ILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 650 ~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
.|...|..|..++.++++.-..|..+...|+.|+...++++..+-.|++.+
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444444455555556666666666666666665554
No 142
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.86 E-value=1.5e+02 Score=25.34 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
.|.+....|..++.++...|.+|.+.
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333444455556666665543
No 143
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.84 E-value=1.2e+02 Score=22.15 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKS 681 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~ 681 (706)
+|-.+|+|+-..-++|+..|.+|+.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445555555555555555555543
No 144
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.81 E-value=68 Score=32.16 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005242 678 QLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 678 ~l~~el~~~~~~~~~l~~~~ 697 (706)
.|+.++++++.+|.||.+|+
T Consensus 70 ~l~~e~~el~d~~lR~~AEf 89 (213)
T 4ani_A 70 ELEAKLSEMEHRYLRLYADF 89 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 145
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.76 E-value=1.5e+02 Score=29.98 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=29.6
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
+..++.++..|..+-.+-..--+-+.-...+-|..++|++..|.+++.|+++
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQA 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
Confidence 4444555544444444333333333444555677777888888888888765
No 146
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.97 E-value=2.8e+02 Score=24.86 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=42.9
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
++-..|.=+..-|+...+|.|..=-+|...-....++++..+..+..|-.++..|
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888999998888888877777777777877777777777666654
No 147
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.60 E-value=1.6e+02 Score=28.93 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=23.1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
+..+..+..+.|-++.+....-..+....+....++++++++|.++..|++.
T Consensus 103 l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~ 154 (276)
T 2v0o_A 103 VQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQER 154 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444332211223333334445555666666655555543
No 148
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.34 E-value=1e+02 Score=22.32 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKS 681 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~ 681 (706)
+|-.+|+|+-..-.+|+..|.+|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555566665555555555555554
No 149
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.80 E-value=2.4e+02 Score=23.65 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
.++|+.|..+--+-..-=.+|+.-+.+||..|.++-.--+.|-++.
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666555544444445678888889988887766666665554
No 150
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.21 E-value=1.1e+02 Score=22.30 Aligned_cols=23 Identities=4% Similarity=0.061 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 005242 658 LRAKCLEYEKRRVELDQKVTQLK 680 (706)
Q Consensus 658 l~~~c~~~~~~~~~l~~~~~~l~ 680 (706)
|-.+|+|+-..-.+|+..|.+|+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444444444444444433
No 151
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.87 E-value=1.1e+02 Score=27.30 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005242 652 MQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNC 688 (706)
Q Consensus 652 ~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~ 688 (706)
..+-..|++++.++++.|++|..-+..++..|.....
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345689999999999999999988888888877653
No 152
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.67 E-value=2.9e+02 Score=26.37 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 655 n~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|+.+...-..+++.-+.|..++.+|+.||++-.+-.+.|-+|+.+|
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555556666666666666666666666666554
No 153
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.46 E-value=2e+02 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
++.-++..++.++++++.++.++...|..
T Consensus 16 ~~~~~~~~~~~~~~~~k~~~~~~~~~l~~ 44 (60)
T 3htk_A 16 ELTEKCSLKTDEFLKAKEKINEIFEKLNT 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555443
No 154
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.14 E-value=2.4e+02 Score=28.30 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=22.4
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE 696 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~ 696 (706)
+++..|..|=..+..+-..+|+...++..++..++.++++++.+++.+-.+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333
No 155
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.08 E-value=3.6e+02 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005242 676 VTQLKSELGEYNCEYERLMAELKALDPI 703 (706)
Q Consensus 676 ~~~l~~el~~~~~~~~~l~~~~~~~~~~ 703 (706)
+..|+++|.+-.++.+.|-.||..+..|
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566677777777777777777666443
No 156
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.20 E-value=35 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
..|..|++.|+.++++++.+-.+|..+|
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999988888877654
No 157
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.16 E-value=1.5e+02 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005242 671 ELDQKVTQLKSELGEYNCEYERL 693 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l 693 (706)
||+-|+.+|=.+..+.+.+-++|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444433333333333333
No 158
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.08 E-value=2.3e+02 Score=22.11 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=28.9
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005242 646 SATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSEL 683 (706)
Q Consensus 646 ~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el 683 (706)
.....|++-|.+|-++-.+++..-.+++|.+..|+.=|
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45678888899888888888887777777777776544
No 159
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.86 E-value=3.1e+02 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005242 670 VELDQKVTQLKSELGEYNCEYERLMAELKA 699 (706)
Q Consensus 670 ~~l~~~~~~l~~el~~~~~~~~~l~~~~~~ 699 (706)
.+|.-+++.|..||+..+..+.++..|-+.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655555554443
No 160
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.83 E-value=1e+02 Score=26.50 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=6.2
Q ss_pred hhHHHHhHHHHHHHH
Q 005242 649 IILMQENEKLRAKCL 663 (706)
Q Consensus 649 ~~l~~en~~l~~~c~ 663 (706)
.+|..+|..|..+..
T Consensus 55 ~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 55 LSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 161
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.77 E-value=1.4e+02 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 005242 657 KLRAKCLEYEKRRVELDQKVTQLKS 681 (706)
Q Consensus 657 ~l~~~c~~~~~~~~~l~~~~~~l~~ 681 (706)
+|-.+|+|+-.+-.+|+..|.+|+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666666655566555555554
No 162
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=20.66 E-value=1.4e+02 Score=30.70 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=34.6
Q ss_pred cceEEEEEeCcccc-hhhhhhcccccCccceeEEEEEecCccCCCCCcchhcccHHHHHHHHHHHHHH
Q 005242 444 IHGFNVYHKNRLIL-PFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMT 510 (706)
Q Consensus 444 ~qGf~VY~nnRLI~-~~wrVg~q~~~~s~grGVIGVleanflePthnKQdFe~t~~y~~Le~~L~e~l 510 (706)
..|+-+|+|+=+|. -...+.|. .-+=|=||||++-|+++-+-.-+..+...+.+.+.|.+.+
T Consensus 70 ~~~ikLYvrrVfI~d~~~~llP~-----yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkv 132 (263)
T 1y6z_A 70 SRGIRLYVKRVFINDKFSESIPR-----WLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKS 132 (263)
T ss_dssp -CCEEEEETTEEEESCGGGGSCG-----GGTTCEEEEEECC------------CTTHHHHHHHHHHHH
T ss_pred hcCeeEEEeeeEeecchhhhchH-----HHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHH
Confidence 57999999988887 33455554 3344668999999999888888887777777766665444
No 163
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.54 E-value=95 Score=31.92 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=18.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005242 648 TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGE 685 (706)
Q Consensus 648 ~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~~ 685 (706)
+..|..++..|.++...+...-+++..++.+|+.||+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444444444444444443
No 164
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.44 E-value=1.2e+02 Score=25.91 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 671 ELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 671 ~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
+|..+.+.|..++++.+.+..+|..+|..|
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666677777666655
No 165
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.39 E-value=1.2e+02 Score=26.67 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005242 666 EKRRVELDQKVTQLKSELGEYNCEYERLMAELKAL 700 (706)
Q Consensus 666 ~~~~~~l~~~~~~l~~el~~~~~~~~~l~~~~~~~ 700 (706)
|.+.+-|..|++.|+.||++....-+.|+.-...|
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY 48 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVY 48 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777766666655543
No 166
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.19 E-value=2.5e+02 Score=22.59 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=28.5
Q ss_pred chhhhhHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005242 645 DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELG 684 (706)
Q Consensus 645 ~~~~~~l~~en~~l~~~c~~~~~~~~~l~~~~~~l~~el~ 684 (706)
......|+|-|.+|-.+-.++|..=.+.+|.+.+|+.=|.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999998888877777776666666666665443
No 167
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.06 E-value=1.2e+02 Score=25.57 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005242 672 LDQKVTQLKSELGEYNC 688 (706)
Q Consensus 672 l~~~~~~l~~el~~~~~ 688 (706)
|.....+|+.|.++.+.
T Consensus 59 l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 168
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.06 E-value=1.2e+02 Score=24.58 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005242 655 NEKLRAKCLEYEK-RRVELDQKVTQLKSELGEYNCEYERLMAEL 697 (706)
Q Consensus 655 n~~l~~~c~~~~~-~~~~l~~~~~~l~~el~~~~~~~~~l~~~~ 697 (706)
|..--.+|-+-.+ .-.+|..++.+|+.|-.+.+.+.++|-.+|
T Consensus 17 NreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 17 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543322 234566666666666666666666655444
Done!