BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005245
(706 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica
GN=Os04g0608600 PE=2 SV=2
Length = 471
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 367 EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 426
+Q+ +L + ++V+++ + DR+ E +F+A MPWF++ +
Sbjct: 224 KQLREAYDELKALRPGNFQVIFISM-DRN-------EEEFQASLSAMPWFAIPYSDTTVQ 275
Query: 427 AVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAR----EEALWK 482
+ R + + P L++L P G+V + ++ +G++AFPF+ +R EE L K
Sbjct: 276 ELSRI----FTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYELEEVLKK 331
Query: 483 E 483
E
Sbjct: 332 E 332
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 328 LPLVE--CPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFL--LEQMYRESRQLSSRTESQ 383
LPL PT +V I L K + L + E F L Y + ++ +
Sbjct: 21 LPLASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGA----G 76
Query: 384 YEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPI 443
+EV+++ D + P FE MPW +V D + E++ P
Sbjct: 77 FEVIFVS-CDENRP-------SFERFHRAMPWPAVPFG---DIGCKKRLSERFQVEGIPR 125
Query: 444 LVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRI 488
LVVL P G VV +A+ ++ +G AFPF+ AR L +E +
Sbjct: 126 LVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKF 170
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 384 YEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV-HHPSAIDPAVIRYAKEKWDFRKKP 442
+E++++P+ + +E + MPW ++ + A A+ RY +D R+ P
Sbjct: 237 FEIIYIPM--------DKEEDGYLRSCSDMPWLALPYDDGASSGALARY----FDVREIP 284
Query: 443 ILVVLDPQGRVVNQNALHMMWIWGSVAFPFS 473
LVV+ P G+ V + +++ ++ +AFPF+
Sbjct: 285 TLVVVGPDGKTVTREGRNLVNLYFDMAFPFT 315
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 375 QLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKE 434
+L++ + +EV+ + T+ +F MPW ++ + + R
Sbjct: 231 ELATTDKGSFEVILIS--------TDRDSREFNINMTNMPWLAIPYEDRTRQDLCRI--- 279
Query: 435 KWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAR 476
++ + P LV++ P+ + V NA M+ ++GS +FPF+ +R
Sbjct: 280 -FNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESR 320
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 403 EHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMM 462
E F MPW +V D E + R P LV++D G++VN+N + ++
Sbjct: 89 EESFGDYFRKMPWLAVPF---TDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGVGVI 145
Query: 463 WIWGSVAFPFSVAR-------EEALWKEETWRIDLLADSVDPVI 499
+G+ A+PF+ + E+ + +T R L+ S D VI
Sbjct: 146 RSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRDFVI 189
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 374 RQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAK 433
+Q+ R E+ +E++++ ++ + F+ MPW ++ DP AK
Sbjct: 390 KQIKERNEA-FELIFIS--------SDRDQESFDEYYSQMPWLALPFG---DPRKASLAK 437
Query: 434 EKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLAD 493
+ P+L L P G+ V + A ++ G+ A+PF+ EE R+ +
Sbjct: 438 -TFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT---EE--------RLKEIEA 485
Query: 494 SVDPVIPTWIMEQKHICLYGGEDLEWVR 521
D + W + KH+ L+ +LE R
Sbjct: 486 KYDEIAKDWPKKVKHV-LHEEHELELTR 512
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVA--- 469
MPW ++ + + RY ++ R P LV++ P G+ +N N ++ G A
Sbjct: 253 MPWLAIPQEDKMGEKLARY----FELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAWEG 308
Query: 470 FPFSVAREEALWKEETWRIDL 490
FPF+ + E L ++ + +L
Sbjct: 309 FPFTAEKMEILAEKAKAKAEL 329
>sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei
GN=MODA PE=2 SV=1
Length = 647
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 274 IYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVEC 333
+ NH LQ K+ H + + + ++ YQA++ L E N ++ +LLI ++ LP+V
Sbjct: 141 VVNHDLQVKKMMHNIRQYEVPLQRYQAMMDLQER----NERLFYKLLIENIEELLPIVYT 196
Query: 334 PT 335
PT
Sbjct: 197 PT 198
>sp|Q2YAC5|PHK_NITMU Probable phosphoketolase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=Nmul_A0993 PE=3 SV=1
Length = 807
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 185 ETLSNLITAMLDLTKCIVEVKELPSD-YITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQ 243
ET SN + A+ D+T ++LP D +++PD M ++ HI C G
Sbjct: 439 ETSSNRLDALFDVTARAWVAQQLPEDEHLSPDGRVMEILSEHI-------------CQGW 485
Query: 244 ILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALV 302
+ G + G + S E + H ++S++N + LK+ + I +R I S L+
Sbjct: 486 LEGYLLTGRHGLFSCYE-----AFIHIVDSMFNQHAKWLKVSKE-IPWRRPIASLNYLL 538
>sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia
GN=MOD1 PE=2 SV=1
Length = 648
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 274 IYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVEC 333
+ NH LQ K+ H + + + ++ YQA++ L + N ++ +LLI ++ LP+V
Sbjct: 141 VVNHDLQVKKMMHNIRQYQVPLQRYQAMMDLQQR----NERLFYKLLIENVEELLPIVYT 196
Query: 334 PT 335
PT
Sbjct: 197 PT 198
>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1
Length = 589
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 273 SIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVE 332
S++N LQ+ +L H L + + + Y AL+ L E N ++ +LLI + LP+V
Sbjct: 82 SVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQER----NERLFYKLLIDNVAELLPVVY 137
Query: 333 CPT 335
PT
Sbjct: 138 TPT 140
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 192 TAMLDLTKCIVEVKELPSDYITPD------TPEMAAVTAHIPTAVYWIIRSIVACAGQIL 245
T + D+ +C+V LP D++ +A + A + + I+++V A +
Sbjct: 637 TDIKDIKRCVVHTNALPIDWLVGYFGKLNVEQSLACLKALMDNNIQANIQTVVQVATKFS 696
Query: 246 GLIGMGHEYIISTTETWELS-SLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRL 304
LIG +I E + + L + + S+ N L + + ++ IE +++ Y+ + R+
Sbjct: 697 DLIGPST--LIKLFEDYNATEGLYYYLASLVN-LTEDKDVVYKYIEAAAKMKQYREIERI 753
Query: 305 METIHI-DNMKVLNRLLIHTKDDQLPLV 331
++ ++ D +V N L +DQLPLV
Sbjct: 754 VKDNNVYDPERVKNFLKDANLEDQLPLV 781
>sp|Q8TT52|SYE_METAC Glutamate--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=gltX PE=3 SV=2
Length = 571
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 325 DDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQY 384
D +LP + +R + + L++ + + V DVS +E +Y E+R++ ++Y
Sbjct: 363 DPRLPTIRAIRRRGIQAEALKKFMIEMGVGMTDVS----ISMESLYAENRKIVDPVANRY 418
Query: 385 EVVWLPI 391
VW P+
Sbjct: 419 FFVWAPV 425
>sp|Q6DCT2|CJ076_XENLA UPF0668 protein C10orf76 homolog OS=Xenopus laevis PE=2 SV=2
Length = 689
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 245 LGLIGMGHEYIISTTETW---ELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQAL 301
L L+ + EY+ S E+ EL L INS++ H + L+ HQ+ R + S Q L
Sbjct: 49 LFLMKVNIEYLESKLESLDGEELMKLKDNINSLFQHCIHALRAEHQI----RVVNSLQTL 104
Query: 302 VRLMETIHIDN 312
L+ +H N
Sbjct: 105 CALIRGVHQKN 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,674,794
Number of Sequences: 539616
Number of extensions: 11009803
Number of successful extensions: 25415
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 25403
Number of HSP's gapped (non-prelim): 23
length of query: 706
length of database: 191,569,459
effective HSP length: 125
effective length of query: 581
effective length of database: 124,117,459
effective search space: 72112243679
effective search space used: 72112243679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)