Query 005245
Match_columns 706
No_of_seqs 147 out of 177
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 20:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14576 SEO_N: Sieve element 100.0 3E-110 6E-115 864.7 22.9 285 22-310 1-286 (286)
2 PF14577 SEO_C: Sieve element 100.0 9.9E-95 2.2E-99 730.4 18.4 233 474-706 1-235 (235)
3 KOG2501 Thioredoxin, nucleored 99.9 1.2E-23 2.6E-28 202.9 10.6 133 329-484 15-152 (157)
4 cd03009 TryX_like_TryX_NRX Try 99.8 7.2E-20 1.6E-24 167.8 13.4 125 333-472 5-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.8 2.9E-18 6.2E-23 164.5 11.1 135 320-470 3-142 (146)
6 cd02964 TryX_like_family Trypa 99.7 2.6E-17 5.7E-22 152.1 13.6 127 329-472 2-132 (132)
7 PF13905 Thioredoxin_8: Thiore 99.5 3.6E-13 7.8E-18 116.7 11.2 91 346-453 1-95 (95)
8 cd02968 SCO SCO (an acronym fo 98.6 1.9E-07 4.1E-12 86.1 9.2 112 334-455 10-138 (142)
9 cd02967 mauD Methylamine utili 98.6 2.6E-07 5.7E-12 82.3 9.8 102 334-457 8-112 (114)
10 cd03012 TlpA_like_DipZ_like Tl 98.6 7E-07 1.5E-11 82.0 11.6 105 336-456 13-121 (126)
11 cd02966 TlpA_like_family TlpA- 98.5 4.6E-07 9.9E-12 77.9 9.5 105 334-456 7-113 (116)
12 PRK03147 thiol-disulfide oxido 98.4 1.3E-06 2.7E-11 83.5 9.3 107 331-456 46-154 (173)
13 PF08534 Redoxin: Redoxin; In 98.4 3.7E-06 8E-11 78.4 11.1 104 334-457 16-131 (146)
14 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 6.5E-06 1.4E-10 73.9 10.3 103 333-455 12-123 (124)
15 PRK14018 trifunctional thiored 98.2 4.8E-06 1E-10 94.9 10.8 108 333-456 45-155 (521)
16 cd03015 PRX_Typ2cys Peroxiredo 98.2 2E-05 4.3E-10 76.6 12.1 105 334-457 17-136 (173)
17 cd03010 TlpA_like_DsbE TlpA-li 98.2 1.3E-05 2.9E-10 73.1 9.9 99 337-456 16-116 (127)
18 TIGR02661 MauD methylamine deh 98.1 1.8E-05 3.8E-10 78.6 11.4 103 328-455 52-161 (189)
19 PLN02412 probable glutathione 98.1 2E-05 4.3E-10 76.8 11.5 118 333-457 16-147 (167)
20 PTZ00256 glutathione peroxidas 98.1 4.8E-05 1E-09 75.1 13.6 117 333-456 27-163 (183)
21 cd02969 PRX_like1 Peroxiredoxi 98.1 1.5E-05 3.3E-10 76.9 9.3 110 333-456 11-125 (171)
22 cd03017 PRX_BCP Peroxiredoxin 98.1 1.6E-05 3.5E-10 73.1 8.5 102 335-456 12-125 (140)
23 cd02971 PRX_family Peroxiredox 98.1 2.1E-05 4.6E-10 72.2 9.2 106 333-457 9-126 (140)
24 TIGR02540 gpx7 putative glutat 98.0 5.9E-05 1.3E-09 71.8 12.2 113 334-456 10-135 (153)
25 KOG2501 Thioredoxin, nucleored 98.0 2.3E-06 4.9E-11 83.8 2.5 47 504-552 31-83 (157)
26 PLN02399 phospholipid hydroper 98.0 5.7E-05 1.2E-09 78.5 12.0 118 333-456 86-216 (236)
27 cd03011 TlpA_like_ScsD_MtbDsbE 98.0 2.1E-05 4.7E-10 70.9 7.7 96 335-454 9-106 (123)
28 PRK15412 thiol:disulfide inter 97.9 3.4E-05 7.3E-10 76.2 9.0 100 336-457 57-159 (185)
29 cd03018 PRX_AhpE_like Peroxire 97.9 5.7E-05 1.2E-09 70.4 9.4 106 333-456 14-129 (149)
30 PLN02919 haloacid dehalogenase 97.9 0.00013 2.8E-09 89.7 15.1 105 335-456 408-518 (1057)
31 cd00340 GSH_Peroxidase Glutath 97.9 1.6E-05 3.6E-10 75.6 5.8 114 334-456 10-138 (152)
32 PRK09437 bcp thioredoxin-depen 97.9 4.7E-05 1E-09 72.1 8.2 104 333-456 17-135 (154)
33 PTZ00056 glutathione peroxidas 97.9 0.00014 3.1E-09 73.2 12.1 114 334-456 27-160 (199)
34 TIGR00385 dsbE periplasmic pro 97.8 0.0001 2.2E-09 71.8 9.6 99 338-456 54-153 (173)
35 TIGR03137 AhpC peroxiredoxin. 97.8 0.00011 2.4E-09 72.8 9.3 101 338-457 23-135 (187)
36 PRK10382 alkyl hydroperoxide r 97.8 0.00014 3.1E-09 72.8 9.9 106 335-456 20-134 (187)
37 PTZ00253 tryparedoxin peroxida 97.7 0.00022 4.7E-09 71.3 10.7 108 334-455 24-141 (199)
38 cd03014 PRX_Atyp2cys Peroxired 97.7 0.00022 4.8E-09 66.4 8.9 104 334-457 14-126 (143)
39 cd02970 PRX_like2 Peroxiredoxi 97.6 0.00026 5.6E-09 65.4 9.0 102 334-455 10-144 (149)
40 PRK13190 putative peroxiredoxi 97.5 0.00037 8E-09 70.2 9.1 100 338-456 19-132 (202)
41 PF02630 SCO1-SenC: SCO1/SenC; 97.5 0.00053 1.1E-08 67.6 10.0 110 333-455 39-169 (174)
42 cd02950 TxlA TRX-like protein 97.5 0.00041 9E-09 66.2 8.6 73 344-456 18-92 (142)
43 PRK00522 tpx lipid hydroperoxi 97.4 0.00054 1.2E-08 66.8 8.8 114 325-458 21-148 (167)
44 TIGR02740 TraF-like TraF-like 97.3 0.00025 5.4E-09 74.9 5.1 91 335-458 155-247 (271)
45 PRK13728 conjugal transfer pro 97.3 0.0007 1.5E-08 68.0 7.6 94 327-456 54-152 (181)
46 PF13098 Thioredoxin_2: Thiore 97.3 0.00082 1.8E-08 59.8 7.2 92 345-455 4-97 (112)
47 PTZ00137 2-Cys peroxiredoxin; 97.2 0.0014 3E-08 69.2 9.2 155 284-457 35-204 (261)
48 cd02955 SSP411 TRX domain, SSP 97.2 0.0018 4E-08 61.1 9.1 79 345-457 14-97 (124)
49 PRK15000 peroxidase; Provision 97.2 0.0024 5.1E-08 64.5 10.2 93 345-456 33-140 (200)
50 cd02953 DsbDgamma DsbD gamma f 97.2 0.0017 3.6E-08 57.6 7.9 72 345-454 10-87 (104)
51 TIGR02738 TrbB type-F conjugat 97.1 0.0028 6.1E-08 61.8 9.9 80 345-455 49-133 (153)
52 cd03016 PRX_1cys Peroxiredoxin 97.1 0.0021 4.6E-08 64.7 9.3 104 338-456 16-132 (203)
53 cd02951 SoxW SoxW family; SoxW 97.1 0.0012 2.6E-08 60.5 6.3 83 345-456 12-101 (125)
54 TIGR01626 ytfJ_HI0045 conserve 96.9 0.0029 6.2E-08 63.8 8.2 103 333-456 46-162 (184)
55 PRK13191 putative peroxiredoxi 96.9 0.0052 1.1E-07 62.9 9.4 111 326-456 11-139 (215)
56 PRK10606 btuE putative glutath 96.9 0.017 3.6E-07 58.1 12.8 124 334-473 13-170 (183)
57 cd02985 TRX_CDSP32 TRX family, 96.7 0.0071 1.5E-07 54.2 8.0 70 344-454 13-84 (103)
58 PRK13189 peroxiredoxin; Provis 96.6 0.0094 2E-07 61.2 9.5 104 338-456 26-141 (222)
59 PRK13599 putative peroxiredoxi 96.6 0.0078 1.7E-07 61.6 8.8 109 334-456 16-134 (215)
60 cd02959 ERp19 Endoplasmic reti 96.6 0.0045 9.7E-08 57.4 6.3 20 344-363 17-36 (117)
61 cd02956 ybbN ybbN protein fami 96.6 0.012 2.7E-07 51.0 8.4 67 345-454 11-79 (96)
62 cd02999 PDI_a_ERp44_like PDIa 96.3 0.0084 1.8E-07 53.8 6.1 67 342-450 14-82 (100)
63 cd02949 TRX_NTR TRX domain, no 96.3 0.02 4.2E-07 50.4 8.0 67 345-454 12-80 (97)
64 PRK10996 thioredoxin 2; Provis 96.1 0.024 5.1E-07 53.9 8.3 69 345-456 51-121 (139)
65 cd02952 TRP14_like Human TRX-r 96.1 0.019 4.1E-07 54.1 7.5 78 345-457 20-107 (119)
66 PF13905 Thioredoxin_8: Thiore 96.1 0.011 2.5E-07 51.1 5.4 52 506-557 1-55 (95)
67 cd03005 PDI_a_ERp46 PDIa famil 96.0 0.019 4.2E-07 49.8 6.6 67 348-454 18-86 (102)
68 PTZ00051 thioredoxin; Provisio 95.9 0.022 4.9E-07 49.4 6.5 67 345-455 17-85 (98)
69 cd02963 TRX_DnaJ TRX domain, D 95.8 0.044 9.5E-07 49.8 8.0 72 343-456 21-94 (111)
70 cd02948 TRX_NDPK TRX domain, T 95.6 0.06 1.3E-06 48.0 8.4 67 345-454 16-84 (102)
71 TIGR01126 pdi_dom protein disu 95.5 0.076 1.7E-06 45.7 8.3 69 345-453 12-82 (102)
72 cd03000 PDI_a_TMX3 PDIa family 95.5 0.042 9.2E-07 48.8 6.8 66 344-448 13-80 (104)
73 cd03002 PDI_a_MPD1_like PDI fa 95.4 0.063 1.4E-06 47.4 7.6 68 345-452 17-86 (109)
74 PRK09381 trxA thioredoxin; Pro 95.4 0.072 1.6E-06 47.5 7.9 67 346-455 21-89 (109)
75 cd02984 TRX_PICOT TRX domain, 95.3 0.067 1.5E-06 46.2 7.1 67 346-455 14-82 (97)
76 TIGR01068 thioredoxin thioredo 95.2 0.076 1.6E-06 45.4 7.1 66 346-454 14-81 (101)
77 cd02993 PDI_a_APS_reductase PD 95.2 0.098 2.1E-06 47.1 8.1 69 345-452 20-90 (109)
78 PHA02278 thioredoxin-like prot 95.1 0.057 1.2E-06 49.3 6.3 71 345-454 13-85 (103)
79 COG1225 Bcp Peroxiredoxin [Pos 95.0 0.18 3.9E-06 50.0 10.1 103 333-455 17-134 (157)
80 PRK00293 dipZ thiol:disulfide 95.0 0.05 1.1E-06 63.3 7.3 72 345-455 473-549 (571)
81 cd03008 TryX_like_RdCVF Trypar 94.9 0.041 8.8E-07 53.6 5.1 108 505-635 24-142 (146)
82 COG1999 Uncharacterized protei 94.9 0.33 7.1E-06 49.7 11.9 113 331-455 52-185 (207)
83 cd02994 PDI_a_TMX PDIa family, 94.5 0.16 3.5E-06 44.5 7.6 67 344-453 15-83 (101)
84 cd03003 PDI_a_ERdj5_N PDIa fam 94.5 0.16 3.6E-06 44.6 7.5 67 344-453 16-84 (101)
85 cd02960 AGR Anterior Gradient 94.3 0.089 1.9E-06 50.5 5.9 92 345-483 22-118 (130)
86 cd02961 PDI_a_family Protein D 94.3 0.23 4.9E-06 41.9 7.8 67 345-451 14-82 (101)
87 cd02998 PDI_a_ERp38 PDIa famil 94.3 0.15 3.2E-06 44.2 6.8 68 346-452 18-87 (105)
88 cd02996 PDI_a_ERp44 PDIa famil 94.2 0.16 3.5E-06 45.3 7.0 71 346-453 18-90 (108)
89 cd02954 DIM1 Dim1 family; Dim1 94.1 0.15 3.2E-06 48.0 6.7 71 345-456 13-83 (114)
90 cd02958 UAS UAS family; UAS is 93.5 0.45 9.8E-06 43.2 8.7 71 345-455 16-92 (114)
91 PTZ00102 disulphide isomerase; 93.5 0.2 4.3E-06 55.7 7.6 69 345-453 374-444 (477)
92 TIGR01295 PedC_BrcD bacterioci 93.5 0.28 6.1E-06 45.9 7.5 38 345-391 22-61 (122)
93 cd02975 PfPDO_like_N Pyrococcu 93.2 0.4 8.7E-06 44.0 7.8 64 346-450 22-85 (113)
94 cd02997 PDI_a_PDIR PDIa family 93.0 0.46 1E-05 41.2 7.6 71 345-454 16-88 (104)
95 cd03001 PDI_a_P5 PDIa family, 92.9 0.49 1.1E-05 41.1 7.7 63 346-450 18-82 (103)
96 TIGR02187 GlrX_arch Glutaredox 92.9 3.9 8.4E-05 41.5 15.2 68 346-453 20-89 (215)
97 cd03004 PDI_a_ERdj5_C PDIa fam 92.8 0.52 1.1E-05 41.5 7.8 69 345-453 18-86 (104)
98 TIGR01295 PedC_BrcD bacterioci 92.8 0.18 3.9E-06 47.2 5.0 44 502-547 19-63 (122)
99 cd02947 TRX_family TRX family; 92.2 0.56 1.2E-05 38.5 6.8 64 347-452 11-74 (93)
100 cd02957 Phd_like Phosducin (Ph 92.0 1.2 2.6E-05 40.5 9.3 87 346-479 24-110 (113)
101 cd02992 PDI_a_QSOX PDIa family 91.5 1.2 2.6E-05 40.9 8.8 76 346-459 19-96 (114)
102 PF00085 Thioredoxin: Thioredo 91.2 0.55 1.2E-05 40.3 6.0 67 345-453 16-84 (103)
103 PTZ00443 Thioredoxin domain-co 90.6 0.81 1.8E-05 47.6 7.5 66 346-454 52-119 (224)
104 cd02989 Phd_like_TxnDC9 Phosdu 90.3 0.69 1.5E-05 42.5 6.0 66 346-455 22-89 (113)
105 cd03013 PRX5_like Peroxiredoxi 90.1 2.9 6.2E-05 40.6 10.4 103 335-456 17-136 (155)
106 cd02982 PDI_b'_family Protein 89.8 1.9 4.2E-05 37.5 8.2 64 346-449 12-77 (103)
107 TIGR00411 redox_disulf_1 small 89.7 1.7 3.7E-05 36.3 7.5 34 350-390 3-38 (82)
108 cd02962 TMX2 TMX2 family; comp 89.5 0.99 2.1E-05 44.3 6.7 39 345-389 46-86 (152)
109 PTZ00062 glutaredoxin; Provisi 89.5 0.7 1.5E-05 47.5 5.9 127 347-546 18-153 (204)
110 cd02964 TryX_like_family Trypa 89.0 0.75 1.6E-05 42.7 5.3 50 505-556 16-71 (132)
111 cd02987 Phd_like_Phd Phosducin 88.5 2 4.4E-05 42.8 8.3 88 346-480 83-170 (175)
112 smart00594 UAS UAS domain. 88.3 2 4.4E-05 39.8 7.7 68 344-451 25-97 (122)
113 cd03026 AhpF_NTD_C TRX-GRX-lik 88.2 2 4.4E-05 38.1 7.3 72 341-456 7-78 (89)
114 COG0450 AhpC Peroxiredoxin [Po 87.9 2.3 5.1E-05 43.6 8.3 104 337-454 24-137 (194)
115 cd03065 PDI_b_Calsequestrin_N 87.4 0.81 1.8E-05 43.2 4.4 91 328-455 2-101 (120)
116 KOG0907 Thioredoxin [Posttrans 86.4 2.2 4.7E-05 39.5 6.6 73 346-459 21-96 (106)
117 cd03009 TryX_like_TryX_NRX Try 86.4 1.3 2.7E-05 40.8 5.1 55 497-555 11-71 (131)
118 cd02995 PDI_a_PDI_a'_C PDIa fa 86.2 3.4 7.3E-05 35.7 7.4 29 346-374 18-48 (104)
119 PTZ00102 disulphide isomerase; 85.3 1.9 4.1E-05 48.1 6.7 70 345-453 48-119 (477)
120 cd02965 HyaE HyaE family; HyaE 85.3 2.2 4.8E-05 40.1 6.1 70 346-456 27-98 (111)
121 cd03006 PDI_a_EFP1_N PDIa fami 84.3 2.7 5.8E-05 39.1 6.2 30 344-373 27-58 (113)
122 cd01659 TRX_superfamily Thiore 84.0 6.1 0.00013 28.9 7.0 61 350-450 1-63 (69)
123 TIGR00412 redox_disulf_2 small 83.7 5.8 0.00013 33.9 7.6 16 436-454 45-60 (76)
124 TIGR01130 ER_PDI_fam protein d 83.5 3 6.4E-05 45.8 7.2 68 345-452 17-86 (462)
125 PF00255 GSHPx: Glutathione pe 83.4 7.1 0.00015 36.5 8.5 53 334-392 9-62 (108)
126 PF14595 Thioredoxin_9: Thiore 82.8 3.4 7.4E-05 39.4 6.4 73 343-455 38-112 (129)
127 TIGR01130 ER_PDI_fam protein d 82.3 3.6 7.7E-05 45.2 7.2 42 345-390 363-406 (462)
128 PRK11657 dsbG disulfide isomer 80.9 9.8 0.00021 40.1 9.6 102 345-453 116-232 (251)
129 KOG0852 Alkyl hydroperoxide re 80.6 2.3 5E-05 43.3 4.5 127 328-481 16-171 (196)
130 TIGR00424 APS_reduc 5'-adenyly 79.8 5.7 0.00012 45.7 7.9 67 345-450 370-438 (463)
131 cd02973 TRX_GRX_like Thioredox 78.5 8.5 0.00018 31.2 6.6 33 351-389 4-36 (67)
132 cd02955 SSP411 TRX domain, SSP 78.0 5.3 0.00011 37.9 5.9 45 503-547 12-60 (124)
133 cd02953 DsbDgamma DsbD gamma f 77.9 6.2 0.00013 34.8 6.0 44 503-546 8-55 (104)
134 TIGR02187 GlrX_arch Glutaredox 77.1 9.1 0.0002 38.9 7.7 30 344-375 131-160 (215)
135 cd02986 DLP Dim1 family, Dim1- 75.2 9.7 0.00021 36.1 6.7 29 345-375 13-41 (114)
136 smart00834 CxxC_CXXC_SSSS Puta 75.0 1.7 3.8E-05 32.6 1.5 30 669-699 10-40 (41)
137 cd02988 Phd_like_VIAF Phosduci 74.2 10 0.00022 38.5 7.1 86 346-480 102-187 (192)
138 PLN02309 5'-adenylylsulfate re 71.7 13 0.00028 42.8 8.0 29 345-373 364-394 (457)
139 PF13899 Thioredoxin_7: Thiore 71.0 19 0.00042 30.7 7.2 20 345-364 16-35 (82)
140 cd02950 TxlA TRX-like protein 70.5 8.6 0.00019 36.8 5.4 45 503-547 17-62 (142)
141 KOG2792 Putative cytochrome C 70.4 8 0.00017 41.6 5.5 58 331-391 124-184 (280)
142 cd03010 TlpA_like_DsbE TlpA-li 69.5 9.4 0.0002 34.8 5.2 48 505-556 24-74 (127)
143 cd02949 TRX_NTR TRX domain, no 68.9 16 0.00034 32.0 6.3 45 504-548 11-56 (97)
144 PF06110 DUF953: Eukaryotic pr 67.8 7.7 0.00017 36.9 4.3 79 345-456 18-105 (119)
145 PF00085 Thioredoxin: Thioredo 67.7 12 0.00025 32.1 5.2 47 503-549 13-61 (103)
146 PRK10996 thioredoxin 2; Provis 66.9 10 0.00022 36.1 5.0 44 502-547 48-94 (139)
147 PF09723 Zn-ribbon_8: Zinc rib 66.6 3.4 7.4E-05 32.2 1.5 30 669-699 10-41 (42)
148 PF13728 TraF: F plasmid trans 66.4 20 0.00044 37.0 7.4 89 339-458 113-201 (215)
149 PF13899 Thioredoxin_7: Thiore 66.4 7.6 0.00016 33.3 3.7 49 503-551 14-66 (82)
150 PRK03147 thiol-disulfide oxido 65.8 12 0.00025 35.8 5.3 52 505-556 60-113 (173)
151 cd02967 mauD Methylamine utili 65.4 13 0.00027 33.0 5.1 50 505-557 20-72 (114)
152 cd02947 TRX_family TRX family; 64.9 16 0.00036 29.7 5.4 44 503-547 7-51 (93)
153 PHA02125 thioredoxin-like prot 63.6 28 0.00061 29.4 6.6 14 350-363 2-15 (75)
154 cd02966 TlpA_like_family TlpA- 63.1 17 0.00037 30.8 5.3 54 505-558 18-74 (116)
155 cd02961 PDI_a_family Protein D 63.0 20 0.00044 29.9 5.7 44 503-546 12-58 (101)
156 cd03003 PDI_a_ERdj5_N PDIa fam 62.4 16 0.00035 32.0 5.1 46 503-548 15-61 (101)
157 COG0386 BtuE Glutathione perox 61.3 9.7 0.00021 38.2 3.8 51 333-391 12-65 (162)
158 cd02956 ybbN ybbN protein fami 60.5 18 0.0004 31.1 5.1 44 505-548 11-55 (96)
159 PLN00410 U5 snRNP protein, DIM 60.3 25 0.00054 34.5 6.4 29 345-373 22-52 (142)
160 PF13098 Thioredoxin_2: Thiore 59.3 12 0.00026 33.1 3.8 48 504-551 3-54 (112)
161 cd02948 TRX_NDPK TRX domain, T 59.2 19 0.00041 32.0 5.1 42 503-546 14-59 (102)
162 TIGR00385 dsbE periplasmic pro 59.0 15 0.00032 35.9 4.7 48 504-554 61-109 (173)
163 PF13778 DUF4174: Domain of un 57.8 82 0.0018 29.6 9.2 92 340-456 2-94 (118)
164 COG2143 Thioredoxin-related pr 57.2 20 0.00044 36.2 5.2 89 344-454 40-129 (182)
165 KOG0910 Thioredoxin-like prote 56.8 15 0.00032 36.5 4.2 47 346-392 61-119 (150)
166 cd03001 PDI_a_P5 PDIa family, 56.2 31 0.00067 29.8 5.8 43 505-547 17-60 (103)
167 PF08209 Sgf11: Sgf11 (transcr 54.2 6.3 0.00014 29.8 0.9 13 684-696 3-15 (33)
168 TIGR01068 thioredoxin thioredo 54.2 21 0.00045 30.3 4.3 44 505-548 13-57 (101)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 53.2 1.1E+02 0.0024 30.5 9.8 99 346-454 77-184 (197)
170 PF02591 DUF164: Putative zinc 52.5 7 0.00015 31.9 1.1 26 670-695 27-56 (56)
171 cd02951 SoxW SoxW family; SoxW 51.9 20 0.00044 32.7 4.1 46 502-547 9-59 (125)
172 TIGR02605 CxxC_CxxC_SSSS putat 51.6 10 0.00022 30.2 1.9 31 669-700 10-42 (52)
173 PRK15412 thiol:disulfide inter 51.4 23 0.0005 35.1 4.7 50 505-557 67-117 (185)
174 PHA02278 thioredoxin-like prot 49.1 25 0.00053 32.2 4.2 44 503-546 11-55 (103)
175 cd02954 DIM1 Dim1 family; Dim1 48.1 37 0.0008 32.1 5.2 42 505-548 13-57 (114)
176 cd02968 SCO SCO (an acronym fo 47.7 26 0.00057 32.2 4.2 44 505-548 21-70 (142)
177 cd03012 TlpA_like_DipZ_like Tl 47.6 39 0.00084 30.9 5.3 39 505-545 22-64 (126)
178 KOG0191 Thioredoxin/protein di 46.7 74 0.0016 35.2 8.2 153 345-546 46-205 (383)
179 TIGR02180 GRX_euk Glutaredoxin 45.9 52 0.0011 27.4 5.4 59 351-446 2-60 (84)
180 PTZ00051 thioredoxin; Provisio 44.6 40 0.00086 29.0 4.6 31 503-533 15-46 (98)
181 TIGR01126 pdi_dom protein disu 44.5 32 0.00069 29.4 4.0 42 503-546 10-56 (102)
182 cd03004 PDI_a_ERdj5_C PDIa fam 44.4 45 0.00098 29.2 5.0 43 505-547 18-61 (104)
183 cd02959 ERp19 Endoplasmic reti 44.1 30 0.00066 32.1 4.0 43 503-545 16-61 (117)
184 cd03002 PDI_a_MPD1_like PDI fa 43.8 36 0.00079 29.8 4.3 43 505-547 17-60 (109)
185 cd02984 TRX_PICOT TRX domain, 43.7 73 0.0016 27.2 6.1 41 506-546 14-55 (97)
186 cd02975 PfPDO_like_N Pyrococcu 43.7 51 0.0011 30.2 5.4 45 503-548 19-64 (113)
187 PRK10877 protein disulfide iso 42.2 1.6E+02 0.0034 30.8 9.3 97 345-454 106-214 (232)
188 COG4481 Uncharacterized protei 42.2 13 0.00028 31.3 1.1 29 664-694 13-43 (60)
189 PRK09381 trxA thioredoxin; Pro 40.7 51 0.0011 29.2 4.8 43 504-548 19-64 (109)
190 PF13408 Zn_ribbon_recom: Reco 40.7 13 0.00027 29.7 0.8 14 684-697 4-17 (58)
191 cd03011 TlpA_like_ScsD_MtbDsbE 40.0 38 0.00082 30.4 3.9 49 504-556 18-68 (123)
192 cd02985 TRX_CDSP32 TRX family, 39.7 43 0.00092 29.9 4.1 40 505-547 14-56 (103)
193 cd02995 PDI_a_PDI_a'_C PDIa fa 39.4 67 0.0015 27.5 5.2 43 505-547 17-62 (104)
194 COG3118 Thioredoxin domain-con 39.1 66 0.0014 35.4 6.1 88 339-468 36-132 (304)
195 cd03005 PDI_a_ERp46 PDIa famil 38.8 44 0.00096 28.7 4.0 42 503-547 14-61 (102)
196 KOG1020 Sister chromatid cohes 37.9 1.5E+02 0.0033 39.1 9.7 116 185-337 1091-1216(1692)
197 cd02960 AGR Anterior Gradient 37.9 55 0.0012 31.7 4.8 41 503-543 20-64 (130)
198 cd02996 PDI_a_ERp44 PDIa famil 37.8 54 0.0012 29.1 4.5 47 502-548 14-67 (108)
199 cd02972 DsbA_family DsbA famil 37.7 2.2E+02 0.0048 23.4 8.0 86 351-448 2-91 (98)
200 PF13913 zf-C2HC_2: zinc-finge 36.9 16 0.00034 25.6 0.7 13 684-696 1-13 (25)
201 cd02999 PDI_a_ERp44_like PDIa 36.7 56 0.0012 29.2 4.4 39 505-546 17-58 (100)
202 cd02963 TRX_DnaJ TRX domain, D 36.5 59 0.0013 29.5 4.6 41 505-547 23-67 (111)
203 TIGR02661 MauD methylamine deh 35.3 59 0.0013 32.5 4.8 46 504-554 72-120 (189)
204 TIGR01206 lysW lysine biosynth 34.8 34 0.00074 28.5 2.5 28 669-698 7-35 (54)
205 TIGR02740 TraF-like TraF-like 34.1 43 0.00092 35.8 3.7 39 505-547 165-206 (271)
206 PF03190 Thioredox_DsbH: Prote 34.0 75 0.0016 32.0 5.2 73 345-455 36-117 (163)
207 cd03006 PDI_a_EFP1_N PDIa fami 33.7 80 0.0017 29.4 5.1 43 503-547 26-71 (113)
208 COG3024 Uncharacterized protei 33.7 18 0.0004 31.3 0.7 16 682-697 4-19 (65)
209 PRK13703 conjugal pilus assemb 32.0 74 0.0016 34.0 5.0 88 340-460 137-226 (248)
210 cd02998 PDI_a_ERp38 PDIa famil 31.0 1.1E+02 0.0025 26.0 5.3 43 505-547 17-62 (105)
211 TIGR00467 lysS_arch lysyl-tRNA 30.9 29 0.00063 40.6 2.0 26 679-704 162-196 (515)
212 PRK02935 hypothetical protein; 30.8 26 0.00056 33.1 1.3 21 685-705 70-91 (110)
213 TIGR02263 benz_CoA_red_C benzo 30.5 1.1E+02 0.0024 34.2 6.3 105 360-472 210-327 (380)
214 cd03000 PDI_a_TMX3 PDIa family 30.5 79 0.0017 27.9 4.3 42 503-546 12-59 (104)
215 PF07191 zinc-ribbons_6: zinc- 30.2 33 0.00071 30.2 1.7 25 681-705 26-55 (70)
216 TIGR02739 TraF type-F conjugat 30.0 69 0.0015 34.4 4.5 89 339-460 143-233 (256)
217 PF10601 zf-LITAF-like: LITAF- 29.4 41 0.0009 28.8 2.2 23 680-702 2-24 (73)
218 TIGR00100 hypA hydrogenase nic 29.2 48 0.0011 31.1 2.8 44 656-703 43-89 (115)
219 COG0526 TrxA Thiol-disulfide i 28.9 1.5E+02 0.0032 24.3 5.5 46 339-391 25-72 (127)
220 TIGR00411 redox_disulf_1 small 28.6 1.7E+02 0.0036 24.2 5.7 45 508-552 2-46 (82)
221 TIGR02196 GlrX_YruB Glutaredox 28.5 1.1E+02 0.0023 24.3 4.4 51 350-419 2-52 (74)
222 PRK07218 replication factor A; 28.3 23 0.0005 40.5 0.6 11 476-486 164-174 (423)
223 KOG1651 Glutathione peroxidase 28.1 90 0.0019 31.8 4.6 53 333-391 21-75 (171)
224 PHA03050 glutaredoxin; Provisi 28.0 72 0.0016 29.5 3.7 34 350-389 15-48 (108)
225 cd02989 Phd_like_TxnDC9 Phosdu 28.0 93 0.002 28.5 4.4 45 503-548 19-64 (113)
226 KOG1088 Uncharacterized conser 28.0 29 0.00062 33.4 1.1 14 682-695 95-108 (124)
227 cd02997 PDI_a_PDIR PDIa family 27.6 67 0.0014 27.6 3.3 35 500-534 11-46 (104)
228 PF13248 zf-ribbon_3: zinc-rib 27.5 26 0.00056 24.6 0.5 13 685-697 2-14 (26)
229 PF14369 zf-RING_3: zinc-finge 27.3 44 0.00096 25.4 1.8 24 668-693 6-29 (35)
230 KOG0190 Protein disulfide isom 27.1 55 0.0012 38.3 3.3 60 327-391 356-424 (493)
231 PRK00750 lysK lysyl-tRNA synth 26.6 39 0.00084 39.4 2.0 27 679-705 169-206 (510)
232 PF11023 DUF2614: Protein of u 26.2 27 0.00058 33.3 0.5 22 684-705 68-90 (114)
233 cd02993 PDI_a_APS_reductase PD 25.8 86 0.0019 28.1 3.7 43 504-546 19-63 (109)
234 PF09237 GAGA: GAGA factor; I 25.7 28 0.00061 29.1 0.5 14 684-697 23-36 (54)
235 KOG3425 Uncharacterized conser 25.6 99 0.0022 30.1 4.2 44 503-546 22-76 (128)
236 PF10871 DUF2748: Protein of u 25.3 2.4E+02 0.0051 31.4 7.4 84 267-359 91-187 (447)
237 PF04108 APG17: Autophagy prot 25.2 2.7E+02 0.006 31.6 8.4 45 262-306 199-247 (412)
238 cd02965 HyaE HyaE family; HyaE 25.1 1.1E+02 0.0025 28.8 4.5 48 501-548 22-72 (111)
239 PF01396 zf-C4_Topoisom: Topoi 24.5 32 0.00069 26.5 0.6 12 686-697 2-13 (39)
240 PF13453 zf-TFIIB: Transcripti 24.3 36 0.00078 26.2 0.8 12 687-698 1-12 (41)
241 PRK00564 hypA hydrogenase nick 23.8 69 0.0015 30.3 2.8 44 655-702 42-89 (117)
242 PF04423 Rad50_zn_hook: Rad50 23.6 32 0.0007 27.9 0.5 10 687-696 22-31 (54)
243 PLN02726 dolichyl-phosphate be 23.4 7.7E+02 0.017 24.8 11.6 101 348-462 10-114 (243)
244 PRK00398 rpoP DNA-directed RNA 23.3 59 0.0013 25.5 1.9 12 685-696 21-32 (46)
245 TIGR03143 AhpF_homolog putativ 23.1 7.9E+02 0.017 28.8 11.8 160 359-546 350-518 (555)
246 PF14026 DUF4242: Protein of u 22.8 1.3E+02 0.0028 26.4 4.1 58 472-541 12-74 (77)
247 PF04371 PAD_porph: Porphyromo 22.8 3E+02 0.0065 30.4 7.9 107 344-466 207-319 (329)
248 PLN00410 U5 snRNP protein, DIM 22.7 1.6E+02 0.0035 28.9 5.1 47 505-551 22-69 (142)
249 COG4545 Glutaredoxin-related p 22.5 2E+02 0.0044 26.1 5.1 74 350-456 5-78 (85)
250 PF11732 Thoc2: Transcription- 22.1 78 0.0017 28.3 2.6 40 151-204 1-40 (77)
251 PF10013 DUF2256: Uncharacteri 20.8 43 0.00092 26.8 0.6 14 682-696 6-19 (42)
252 cd02962 TMX2 TMX2 family; comp 20.8 1.9E+02 0.004 28.5 5.2 45 505-549 46-92 (152)
253 smart00714 LITAF Possible memb 20.7 68 0.0015 27.0 1.9 20 683-702 1-20 (67)
254 cd02525 Succinoglycan_BP_ExoA 20.7 6.6E+02 0.014 24.6 9.2 90 365-463 14-103 (249)
255 PRK12775 putative trifunctiona 20.7 44 0.00096 42.1 1.1 22 685-706 796-817 (1006)
256 PRK11200 grxA glutaredoxin 1; 20.4 2.7E+02 0.0058 23.8 5.6 33 351-391 4-38 (85)
257 cd02970 PRX_like2 Peroxiredoxi 20.4 2.1E+02 0.0046 26.1 5.3 45 505-549 23-69 (149)
258 PF08534 Redoxin: Redoxin; In 20.2 2E+02 0.0044 26.6 5.2 45 505-549 27-74 (146)
259 PF13717 zinc_ribbon_4: zinc-r 20.1 57 0.0012 24.8 1.2 20 673-694 12-34 (36)
260 PF03884 DUF329: Domain of unk 20.1 35 0.00077 28.8 0.0 14 684-697 1-14 (57)
No 1
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=3e-110 Score=864.70 Aligned_cols=285 Identities=61% Similarity=1.015 Sum_probs=272.5
Q ss_pred cCcchHHHHHHHhhcCCCCcccChhHhHHHHHHHHhhhcCCCCcc-ccchhhhhcccccccccccccccchhhhhhhhhh
Q 005245 22 TSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGF-IQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRI 100 (706)
Q Consensus 22 ~sdd~i~~~~I~~TH~~d~~~~Dv~~L~~ive~Il~~a~~~~d~~-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~I 100 (706)
+|||++||||||+||+||||+|||+|||++||||++||+++++.. ....+.+.+.++++..+.++.++++|++++||||
T Consensus 1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI 80 (286)
T PF14576_consen 1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI 80 (286)
T ss_pred CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence 478888899999999999999999999999999999999987332 2344555556668888889999999999999999
Q ss_pred hheeecccCCCCchhhhHHHHHhhhccCcchHHHHHHHHHHHHhhccchhccccCCCChHHHHHHHHhcchhhhhccccC
Q 005245 101 SCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTM 180 (706)
Q Consensus 101 scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqvp~i~~~~~~~ 180 (706)
||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||+|+|+|++||||||||+|||||+|+||.+++
T Consensus 81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~~~l 160 (286)
T PF14576_consen 81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHSDSL 160 (286)
T ss_pred HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhHHHHHHHHHhhhhhhccCCCcCCCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhcccccccccccccccc
Q 005245 181 KPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTE 260 (706)
Q Consensus 181 k~~~~~ln~Lvk~m~~V~~cIie~~~L~~~y~~~dvpal~~a~~~IP~~vYW~I~siVac~~qi~~l~~~~~~~~~s~~~ 260 (706)
||||+++|+|||+||||++||+||++||++||++|||+|++|++|||+||||||||+|||++||++||+|||| +.++++
T Consensus 161 k~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~~ 239 (286)
T PF14576_consen 161 KPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTTE 239 (286)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 005245 261 TWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHI 310 (706)
Q Consensus 261 ~~eLS~l~~Kl~~i~~~L~~ql~~c~~~I~~~~~~e~y~~l~~lf~~~~~ 310 (706)
+||||+|+|||++|++|||+||++|+||||+ +|+|++|+++|++||+
T Consensus 240 ~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~ 286 (286)
T PF14576_consen 240 AWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI 286 (286)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999 9999999999999985
No 2
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=9.9e-95 Score=730.40 Aligned_cols=233 Identities=56% Similarity=1.083 Sum_probs=230.2
Q ss_pred hhhHHHhhhhcccccccccccCCCCccccccCceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhh
Q 005245 474 VAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKAR 553 (706)
Q Consensus 474 ~~r~eeL~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~ 553 (706)
++|+|+||++|+|+|+||+|++||.|.+||+||||||||||+|++|||+||.++++||++|++++||+||||+||+|+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCcchhhhHHHhhhhhhhhhccCCCCCCChhHHHHHHHhcccCCCCceEEEecCCc-ccccchh
Q 005245 554 RIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPH-MAKAKDE 632 (706)
Q Consensus 554 ~~~~~i~~e~ls~~~~d~t~v~~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LLs~~~~~~GWavlskGs~-~~~g~G~ 632 (706)
+++++|+.|||||+|+|||+|||||+|||||++||+|+|+++++|++||||++||||||+++|||||||||+ +++|||+
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~ 160 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE 160 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hHHHHHhhhcccCCCCCCCcHHHHHHHhhhhcC-CCCCccceecCCCCCCCCceeecCCCCcccceeeeecccCC
Q 005245 633 TILKCLTEYTTWEPNVPEKSFVVAMNDYLNENR-TPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706 (706)
Q Consensus 633 ~~l~tl~ef~~Wk~~v~~kGF~~Af~ey~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~i~YkCCh~ 706 (706)
+|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+||||||+||+||+||||||
T Consensus 161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd 235 (235)
T PF14577_consen 161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD 235 (235)
T ss_pred cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence 999999999999999999999999999999988 59999999999999999999999999999999999999997
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=202.86 Aligned_cols=133 Identities=24% Similarity=0.340 Sum_probs=117.4
Q ss_pred ccccCCCCceeecc-eecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHH
Q 005245 329 PLVECPTKRKVSID-VLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHK 405 (706)
Q Consensus 329 pl~dg~~~~kV~Is-~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~ 405 (706)
...-+..+..|.++ .|+||.|+|||||+||+|| |+|+|.+.|++++. .+..|||||||. |+++++
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~----~~~~fEVvfVS~--------D~~~~~ 82 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD----NAAPFEVVFVSS--------DRDEES 82 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh----cCCceEEEEEec--------CCCHHH
Confidence 34556778899998 6999999999999998885 55799999999985 445999999974 899999
Q ss_pred HHHhhcC--CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245 406 FEALQYM--MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE 483 (706)
Q Consensus 406 Fe~~~~~--MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~ 483 (706)
|++|+.. |||++|||.+ +.++.+.++|.+++||.|+++.|+|.++..||+.+|..+|. .+-.+++++
T Consensus 83 ~~~y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e 151 (157)
T KOG2501|consen 83 LDEYMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE 151 (157)
T ss_pred HHHHHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence 9999985 9999999987 78999999999999999999999999999999999999998 566677666
Q ss_pred c
Q 005245 484 E 484 (706)
Q Consensus 484 e 484 (706)
|
T Consensus 152 w 152 (157)
T KOG2501|consen 152 W 152 (157)
T ss_pred H
Confidence 4
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=7.2e-20 Score=167.84 Aligned_cols=125 Identities=24% Similarity=0.408 Sum_probs=111.9
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
..+|+.|++++++||.|+|+|.+.||++|.. +.|.++|+++++ .+.+++||+|++ |.+++.|..+.
T Consensus 5 ~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~----~~~~~~vv~is~--------d~~~~~~~~~~ 72 (131)
T cd03009 5 RNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----SGKNFEIVFISW--------DRDEESFNDYF 72 (131)
T ss_pred ccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh----cCCCEEEEEEEC--------CCCHHHHHHHH
Confidence 3577899999999999999999999999875 789999999973 345799999987 55678999999
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccC
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPF 472 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPF 472 (706)
+.+||+.+||++ ....+.+.+.|++.++|+++++|++|+++..||.+|+..||.+||||
T Consensus 73 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999999999964 45667888999999999999999999999999999999999999998
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.76 E-value=2.9e-18 Score=164.53 Aligned_cols=135 Identities=20% Similarity=0.361 Sum_probs=110.3
Q ss_pred hcccCCCCCccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcc-cCCCCCeEEEEEecccCCC
Q 005245 320 LIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLS-SRTESQYEVVWLPIVDRST 396 (706)
Q Consensus 320 LI~~k~~~~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~-~~~~~~fEIVwIpiVd~s~ 396 (706)
||..++++ ++.+-.+++++.++||.|+|+|.|.||++|.. |.|.++|++++++. .+...+||||.|+.
T Consensus 3 ~~~~~~~~----~~~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~----- 73 (146)
T cd03008 3 LIKNNSDR----DELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM----- 73 (146)
T ss_pred eeccCccc----cchhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC-----
Confidence 45544441 34445577889999999999999999988655 78999999997531 11345799999985
Q ss_pred CcChhhHHHHHHhhcCCC--ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccc
Q 005245 397 PWTEAKEHKFEALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF 470 (706)
Q Consensus 397 ~w~D~de~~Fe~~~~~MP--WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF 470 (706)
|++++.+..+.++|+ |+++|+.+ .....+.+.|++.++|+++++||+|+++..|++..|..+|.+||
T Consensus 74 ---D~~~~~~~~f~~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 74 ---DQSEQQQESFLKDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ---CCCHHHHHHHHHHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 566777999999998 99999975 33457788899999999999999999999999999999999987
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.74 E-value=2.6e-17 Score=152.12 Aligned_cols=127 Identities=25% Similarity=0.383 Sum_probs=110.8
Q ss_pred ccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH
Q 005245 329 PLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF 406 (706)
Q Consensus 329 pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F 406 (706)
-|.||+ +.|+++.++||.|+|+|.+.||++|.. +.|.++|+++++ ...+++||+|++ |++.+.+
T Consensus 2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~----~~~~v~vi~Vs~--------d~~~~~~ 67 (132)
T cd02964 2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----EGKNFEIVFVSR--------DRSEESF 67 (132)
T ss_pred ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh----cCCCeEEEEEec--------CCCHHHH
Confidence 356777 799999999999999999999988776 689999999973 225799999986 4556778
Q ss_pred HHhhcCC-CceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHH-hCcccccC
Q 005245 407 EALQYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWI-WGSVAFPF 472 (706)
Q Consensus 407 e~~~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AFPF 472 (706)
+.+..++ +|+.+++.+ ......+.+.|++.++|+.+++|++|+++..|+..++.. ||..||||
T Consensus 68 ~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 68 NEYFSEMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHhcCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8888888 899999953 456678999999999999999999999999999999999 99999998
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.47 E-value=3.6e-13 Score=116.69 Aligned_cols=91 Identities=22% Similarity=0.407 Sum_probs=78.3
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCC--CceeeccC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM--PWFSVHHP 421 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~M--PWyAVpf~ 421 (706)
||.++|+|.+.||++|.. +.|.++|++.+ .+.+++||+||+ |++++.++++.+.+ ||+.+|+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~-----~~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK-----KKDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence 899999999999888654 78999999997 267899999997 67788999988888 99999997
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
+ .....+.+.|++.++|++++|||+|+|
T Consensus 68 ~----~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 D----DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T----HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred c----chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 5 457789999999999999999999986
No 8
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.60 E-value=1.9e-07 Score=86.12 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=78.7
Q ss_pred CCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
.+|+.++++.++||.++|+|.+.||++ | +++.|.++|++++++ ..++++||+|++ |...+ +.+..++|-+-.
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~---~~~~v~~v~vs~-d~~~d-~~~~~~~~~~~~ 84 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD---GGDDVQVVFISV-DPERD-TPEVLKAYAKAF 84 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh---hcCceEEEEEEE-CCCCC-CHHHHHHHHHHh
Confidence 466789999999999999999999876 5 557899999999742 115799999987 31000 112233443332
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCCCC--------------CcEEEEECCCCceec
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK--------------KPILVVLDPQGRVVN 455 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~--------------iP~LVvL~pqGkv~~ 455 (706)
. .+|..+..++ +..+.+.+.|++.. .|..+|+||+|+++.
T Consensus 85 ~-~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 138 (142)
T cd02968 85 G-PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR 138 (142)
T ss_pred C-CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence 2 5788887753 34556667777543 457999999999975
No 9
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.60 E-value=2.6e-07 Score=82.30 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCCceeecceec-CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLR-RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~-gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
.+|+.+.++.++ ||.|+|+|-+.||++|.. +.|.++|++.+ .++.|+-|+ | .+.+..+.+.
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~--~-------~~~~~~~~~~ 71 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS--D-------GEKAEHQRFL 71 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe--C-------CCHHHHHHHH
Confidence 457789999998 999999999999988765 67888777653 247777553 2 2333444444
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 457 (706)
..++.-..|+ ..+. .+.+.|++.++|..+++|++|+++..+
T Consensus 72 ~~~~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 KKHGLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHhCCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 4333222222 1122 256788999999999999999998654
No 10
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.56 E-value=7e-07 Score=82.00 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=72.9
Q ss_pred CceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc--
Q 005245 336 KRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY-- 411 (706)
Q Consensus 336 ~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~-- 411 (706)
++.|+++.++||.|+|+|-+.||++|. ++.|.++|++.++ .+++||.|+.-+.+ .+++.+...++..
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~------~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~ 83 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD------DGLVVIGVHSPEFA---FERDLANVKSAVLRY 83 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc------CCeEEEEeccCccc---cccCHHHHHHHHHHc
Confidence 568999999999999999999997765 4789999999862 46899988641111 1222333333222
Q ss_pred CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
.++|..+- |. ...+.+.|++.+.|..+|+|++|+++..
T Consensus 84 ~~~~p~~~-----D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 84 GITYPVAN-----DN--DYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCCEEE-----CC--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 34443222 22 2344567799999999999999999854
No 11
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.55 E-value=4.6e-07 Score=77.89 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY 411 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~ 411 (706)
.+|..++..+++||.++|+|.+.||+.|.. +.|.++++++. +.++.++.|++ |. .+.++-+.|-.-+.
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~---~~~~~~~~~~~~~~ 76 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD---DDPAAVKAFLKKYG 76 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC---CCHHHHHHHHHHcC
Confidence 456789999999999999999999988866 35777666653 34688888875 21 12333333322222
Q ss_pred CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
-||.-+. +. .+.+.+.|++.+.|.++++||+|+++..
T Consensus 77 -~~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 77 -ITFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred -CCcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 3333222 22 3567888999999999999999999854
No 12
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=1.3e-06 Score=83.46 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=76.8
Q ss_pred ccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245 331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA 408 (706)
Q Consensus 331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~ 408 (706)
+...+|+.+++++++||.++|+|-+.||+.|.. +.|.+++++++ +.++++|-|+. |.+.+...+
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~------~~~~~vi~i~~--------d~~~~~~~~ 111 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK------EKGVEIIAVNV--------DETELAVKN 111 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhh------cCCeEEEEEEc--------CCCHHHHHH
Confidence 345678899999999999999999999988775 67999999886 23588998875 333344444
Q ss_pred hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
+...++ ++|+-..|. .+.+.+.|++.+.|..+++|++|+++..
T Consensus 112 ~~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 112 FVNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 443332 233322221 2455667899999999999999999843
No 13
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.35 E-value=3.7e-06 Score=78.42 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=78.0
Q ss_pred CCCceeecceecCcEEEEEEecC-CCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDL-DVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal-~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
.+|+.++++.++||.|+|.|-+. |||+|.. +.|.++|++.+ ..++++|.|...+ |....+|-+-
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~------~~~v~~v~v~~~~------~~~~~~~~~~- 82 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK------DKGVDVVGVSSDD------DPPVREFLKK- 82 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH------TTTCEEEEEEESS------SHHHHHHHHH-
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc------cCceEEEEecccC------CHHHHHHHHh-
Confidence 78999999999999999999999 9998776 67999988876 3459999998733 3335555443
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCCC---------CCcEEEEECCCCceeccc
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFR---------KKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~---------~iP~LVvL~pqGkv~~~n 457 (706)
...+|..+--+ -..+.+.|++. +.|..+++|++|+|+...
T Consensus 83 ~~~~~~~~~D~-------~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 83 YGINFPVLSDP-------DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TTTTSEEEEET-------TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred hCCCceEEech-------HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 44555553332 23345556887 999999999999998654
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.27 E-value=6.5e-06 Score=73.93 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=74.6
Q ss_pred CCCCceeecceecCcEEEEEEecC-CCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDL-DVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal-~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
..+|+++++++|+||.++|+|-+. ||+.|.. +.|.+.|++++. .+..||.|+. | +.++.++|-+.
T Consensus 12 ~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~------~~~~vi~is~-d-----~~~~~~~~~~~ 79 (124)
T PF00578_consen 12 DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD------KGVQVIGIST-D-----DPEEIKQFLEE 79 (124)
T ss_dssp TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----SHHHHHHHHHH
T ss_pred CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc------ceEEeeeccc-c-----cccchhhhhhh
Confidence 456789999999999999999888 9888765 579999999973 3699999986 3 13344555444
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN 455 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~ 455 (706)
.. +||-.+.-++ ..+.+.|+.. ..|..+++||+|+++.
T Consensus 80 ~~-~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 80 YG-LPFPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HT-CSSEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hc-cccccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 33 3333333221 2345566887 9999999999999874
No 15
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.24 E-value=4.8e-06 Score=94.94 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=80.6
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC-hhhHHHHHHh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT-EAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~-D~de~~Fe~~ 409 (706)
..+|+++.++ +||.|+|.|-|.||++|.. +.|.++|++.+ ..+++||-|.+ + .++ +++.+.|.++
T Consensus 45 D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k------~~~v~VI~Vs~-~---~~~~e~~~~~~~~~ 112 (521)
T PRK14018 45 DNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK------FSSANLITVAS-P---GFLHEKKDGDFQKW 112 (521)
T ss_pred cCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEec-c---cccccccHHHHHHH
Confidence 4456677776 9999999999999988766 78999999875 34588888864 2 222 4456788888
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
.+.+.|..+|.- +|. -..+.+.|+++++|++++||++|+++..
T Consensus 113 ~~~~~y~~~pV~--~D~--~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 113 YAGLDYPKLPVL--TDN--GGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHhCCCccccee--ccc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 877776544442 133 2346678899999999999999999854
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.17 E-value=2e-05 Score=76.62 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=74.6
Q ss_pred CCCceeecceecCcEEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
.++..+++++++||.|+|+|- +.||+. .+++.|.+.|+++++ .++.||.|+. |. ....+.|.+..
T Consensus 17 ~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d~-----~~~~~~~~~~~ 84 (173)
T cd03015 17 GEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-DS-----HFSHLAWRNTP 84 (173)
T ss_pred CCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-CC-----HHHHHHHHHhh
Confidence 344789999999999999887 788755 456789999999973 4699999975 31 23344565543
Q ss_pred ------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceeccc
Q 005245 411 ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 411 ------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 457 (706)
...||-.+.-++ .+.. +.|++. .+|..+|||++|+++..+
T Consensus 85 ~~~~~~~~~~f~~l~D~~---~~~~----~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 85 RKEGGLGKINFPLLADPK---KKIS----RDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hhhCCccCcceeEEECCc---hhHH----HHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 356776655432 2333 345664 578999999999998776
No 17
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.15 E-value=1.3e-05 Score=73.11 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=67.3
Q ss_pred ceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCC
Q 005245 337 RKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMP 414 (706)
Q Consensus 337 ~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MP 414 (706)
..++.++++||.|+|+|-+.||++|.. +.|.+++++ .+++||-|+.-| +.++-++|-.. ...|
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~---------~~~~vv~v~~~~-----~~~~~~~~~~~-~~~~ 80 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ---------GRVPIYGINYKD-----NPENALAWLAR-HGNP 80 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh---------cCcEEEEEECCC-----CHHHHHHHHHh-cCCC
Confidence 578889999999999999999988775 445544322 138888887522 12223333222 3347
Q ss_pred ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 415 WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 415 WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
|..+-... ...+...|++.++|..++||++|+++..
T Consensus 81 ~~~~~~D~------~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 81 YAAVGFDP------DGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred CceEEECC------cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 76554422 2346667899999999999999998844
No 18
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.15 E-value=1.8e-05 Score=78.64 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=71.1
Q ss_pred CccccC--CCCceeec--ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChh
Q 005245 328 LPLVEC--PTKRKVSI--DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEA 401 (706)
Q Consensus 328 ~pl~dg--~~~~kV~I--s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~ 401 (706)
.|-|.. .+|+.+.+ ..++||.|.|+|.+.|||+|.. +.+.++|++. ++.+++|+. | +++
T Consensus 52 aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~-----~~~ 116 (189)
T TIGR02661 52 APIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G-----TPA 116 (189)
T ss_pred CCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----CHH
Confidence 344443 35788999 4589999999999999988765 6787776432 377899972 2 244
Q ss_pred hHHHHH-HhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 402 KEHKFE-ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 402 de~~Fe-~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
+.++|- ++.-+.|.|. . + ..+.+.|++.++|..+++|++|++..
T Consensus 117 ~~~~~~~~~~~~~~~~~--~----~----~~i~~~y~v~~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 117 EHRRFLKDHELGGERYV--V----S----AEIGMAFQVGKIPYGVLLDQDGKIRA 161 (189)
T ss_pred HHHHHHHhcCCCcceee--c----h----hHHHHhccCCccceEEEECCCCeEEE
Confidence 445554 3323344443 1 1 23456789999999999999999986
No 19
>PLN02412 probable glutathione peroxidase
Probab=98.14 E-value=2e-05 Score=76.79 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=81.2
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCC-C-CcCh-hhHHHH-
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-T-PWTE-AKEHKF- 406 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s-~-~w~D-~de~~F- 406 (706)
..+|++|.++.++||.|+|+|-+.||++|. .+.|.++|++.+. .+++||=||.-+.. . +-+. +-.+.|
T Consensus 16 d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~------~g~~vvgv~~~~~~~~~~~~~~~~~~~~~ 89 (167)
T PLN02412 16 DIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE------QGFEILAFPCNQFLGQEPGSNEEIQQTVC 89 (167)
T ss_pred CCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh------CCcEEEEecccccccCCCCCHHHHHHHHH
Confidence 457789999999999999999999988875 5889999999973 35999999862100 0 0122 224455
Q ss_pred HHhhcCCCceee--ccCCCCCHHHHHHHHHhh----C--CCCCcEEEEECCCCceeccc
Q 005245 407 EALQYMMPWFSV--HHPSAIDPAVIRYAKEKW----D--FRKKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 407 e~~~~~MPWyAV--pf~~~id~~~~r~ike~~----~--~~~iP~LVvL~pqGkv~~~n 457 (706)
+.+.-+.|+++- +-... .....++++..- . +...|+-.++|++|+++..-
T Consensus 90 ~~~~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 90 TRFKAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HccCCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 555667788752 22111 234456665431 2 56679999999999999764
No 20
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.11 E-value=4.8e-05 Score=75.11 Aligned_cols=117 Identities=16% Similarity=0.325 Sum_probs=74.8
Q ss_pred CCCCceeecceecCcEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHH
Q 005245 333 CPTKRKVSIDVLRRKSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFE 407 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe 407 (706)
..+|+.|++++++||.| ++++-+.||++|. .+.|.++|++.+. .+++||-||.-+ ...+++.++-.+|-
T Consensus 27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~------~gv~vv~vs~~~~~~~~~~~~~~~~~f~ 100 (183)
T PTZ00256 27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS------QGLEILAFPCNQFMEQEPWDEPEIKEYV 100 (183)
T ss_pred cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh------CCcEEEEEecccccccCCCCHHHHHHHH
Confidence 45788999999999965 4555799988765 5789999999963 359999998521 11123334444552
Q ss_pred --HhhcCCCceee--ccCCCCCHHHHHHHHHhh--------CCCCCcE---EEEECCCCceecc
Q 005245 408 --ALQYMMPWFSV--HHPSAIDPAVIRYAKEKW--------DFRKKPI---LVVLDPQGRVVNQ 456 (706)
Q Consensus 408 --~~~~~MPWyAV--pf~~~id~~~~r~ike~~--------~~~~iP~---LVvL~pqGkv~~~ 456 (706)
.+.-+.|=++- +-.. ...+..+++++.. .+.++|. .+++|++|+++..
T Consensus 101 ~~~~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 101 QKKFNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred HHhcCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 22222232210 1111 1134667777765 4668995 6999999999864
No 21
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.08 E-value=1.5e-05 Score=76.86 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 333 CPTKRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
..+|..|+++.+ +||.|+|+|=+.|||.|.. +.|.++|++.+ +.++++|-|++-+....+. ++.+....+
T Consensus 11 ~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~------~~~v~~v~is~d~~~~~~~-d~~~~~~~~ 83 (171)
T cd02969 11 DTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYG------AKGVAVVAINSNDIEAYPE-DSPENMKAK 83 (171)
T ss_pred CCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHh------hCCeEEEEEecCccccccc-cCHHHHHHH
Confidence 345678999998 9999999999999988644 67999998885 2469999998622111111 133344443
Q ss_pred hc--CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 410 QY--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 410 ~~--~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
.+ ..||-.+ .|.. +.+.+.|++.+.|..+++||+|+++-.
T Consensus 84 ~~~~~~~~~~l-----~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 84 AKEHGYPFPYL-----LDET--QEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HHHCCCCceEE-----ECCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 32 3443322 2322 356678899999999999999999854
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.06 E-value=1.6e-05 Score=73.13 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245 335 TKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY 411 (706)
Q Consensus 335 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~ 411 (706)
+|+.+++++++||.++|+|- +.|||.| +++.|.+.|++++. .+++||.|+. | +.+.-.+|-+.+
T Consensus 12 ~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~------~~~~vv~is~-d-----~~~~~~~~~~~~- 78 (140)
T cd03017 12 DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA------LGAVVIGVSP-D-----SVESHAKFAEKY- 78 (140)
T ss_pred CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHHh-
Confidence 57789999999999999987 5676554 55789999999862 4589999975 3 233444554432
Q ss_pred CCCceeeccCCCCCHHHHHHHHHhhCCCCC---------cEEEEECCCCceecc
Q 005245 412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKK---------PILVVLDPQGRVVNQ 456 (706)
Q Consensus 412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~i---------P~LVvL~pqGkv~~~ 456 (706)
.++|..+- |.. +.+.+.|++... |..+++|++|+++..
T Consensus 79 ~~~~~~l~-----D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 GLPFPLLS-----DPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCCceEEE-----CCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 35554442 222 346677898887 999999999999854
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.05 E-value=2.1e-05 Score=72.23 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
+.+|+.+++++++||.++|+|- +.||+.| +++.|.++|++++. .+++||.|+. | +....+.|-+-
T Consensus 9 ~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~-d-----~~~~~~~~~~~ 76 (140)
T cd02971 9 ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV-D-----SPFSHKAWAEK 76 (140)
T ss_pred cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHhc
Confidence 3467899999999998888877 7887654 45789999999962 3599999985 3 13334555544
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------EEEEECCCCceeccc
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQN 457 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~n 457 (706)
....+|-.+- |.. ..+.+.|++...| ..+++|++|+++...
T Consensus 77 ~~~~~~~~l~-----D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 77 EGGLNFPLLS-----DPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred ccCCCceEEE-----CCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 4355665543 222 2566778887665 799999999998653
No 24
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.04 E-value=5.9e-05 Score=71.77 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec--ccCCCCcChhhHHHHHHh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI--VDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi--Vd~s~~w~D~de~~Fe~~ 409 (706)
.+|+.+++++++||.|+|+|-+.||++|.. +.|.++|++.+. .+++||-||. +..+.+=+.++...|-+-
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 467789999999999999999999988644 789999999963 3699999985 211100012334455432
Q ss_pred hcCCCceeec-----cCCCCCHHHHHHHHHhhCCCCCcE----EEEECCCCceecc
Q 005245 410 QYMMPWFSVH-----HPSAIDPAVIRYAKEKWDFRKKPI----LVVLDPQGRVVNQ 456 (706)
Q Consensus 410 ~~~MPWyAVp-----f~~~id~~~~r~ike~~~~~~iP~----LVvL~pqGkv~~~ 456 (706)
....++..+. -++ -....+++.+ +..+.|. ..++|++|+++..
T Consensus 84 ~~~~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 84 NYGVTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred hcCCCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence 1233332221 111 1223455543 3456897 9999999999863
No 25
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.04 E-value=2.3e-06 Score=83.78 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=40.8
Q ss_pred cCceEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeEEEeccCCchhhh
Q 005245 504 MEQKHICLYGGEDLEWV---RKFTALMGAVARAA---GIALEMLYVGKSNPKEKA 552 (706)
Q Consensus 504 ~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~---~~~~E~v~Vgkdn~~e~v 552 (706)
.+||.|+||||+ +|| |+||+.+.+++++. +.+||+||||+|+..+..
T Consensus 31 l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~ 83 (157)
T KOG2501|consen 31 LQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL 83 (157)
T ss_pred hCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence 499999999999 886 99999999998863 557999999999876663
No 26
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.99 E-value=5.7e-05 Score=78.49 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=75.8
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCC-CC-cChhhHHHHH-
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-TP-WTEAKEHKFE- 407 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s-~~-w~D~de~~Fe- 407 (706)
..+|+.|.+++++||.|+|.|-+.||++| +.+.|.++|++.+. .+++||-|++-+.. .+ =+.++..+|-
T Consensus 86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~------~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~ 159 (236)
T PLN02399 86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT------QGFEILAFPCNQFGGQEPGSNPEIKQFAC 159 (236)
T ss_pred CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc------CCcEEEEEecccccccCCCCHHHHHHHHH
Confidence 35678999999999999999999999987 55889999999863 35999999862110 00 0123445552
Q ss_pred -HhhcCCCceeeccCC-CCCHHHHHHHHHhhC------CCCCcEEEEECCCCceecc
Q 005245 408 -ALQYMMPWFSVHHPS-AIDPAVIRYAKEKWD------FRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 408 -~~~~~MPWyAVpf~~-~id~~~~r~ike~~~------~~~iP~LVvL~pqGkv~~~ 456 (706)
.+....|-++=.-.. ..-.+..++++..+. ++..|.-+++|++|+++..
T Consensus 160 ~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 160 TRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred HhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 333334432100000 001123455544332 3567999999999999974
No 27
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.98 E-value=2.1e-05 Score=70.94 Aligned_cols=96 Identities=18% Similarity=0.331 Sum_probs=66.4
Q ss_pred CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245 335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 412 (706)
Q Consensus 335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~ 412 (706)
+|+.+..+.++||.++|+|-+.||++|.. +.|..+|++ ++++-|+. |+. +.+..++|-+-+ .
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~-~~~---~~~~~~~~~~~~-~ 72 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVAL-RSG---DDGAVARFMQKK-G 72 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEc-cCC---CHHHHHHHHHHc-C
Confidence 45789999999999999999999998775 567777654 56777765 210 123334444332 2
Q ss_pred CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
+||-.+.-+ . ..+.+.|++.+.|.++++|++| +.
T Consensus 73 ~~~~~~~d~-----~--~~~~~~~~i~~~P~~~vid~~g-i~ 106 (123)
T cd03011 73 YGFPVINDP-----D--GVISARWGVSVTPAIVIVDPGG-IV 106 (123)
T ss_pred CCccEEECC-----C--cHHHHhCCCCcccEEEEEcCCC-eE
Confidence 555444322 1 3466678999999999999999 44
No 28
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.95 E-value=3.4e-05 Score=76.19 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=66.0
Q ss_pred Cceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245 336 KRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 412 (706)
Q Consensus 336 ~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~ 412 (706)
|+.+..+.+ +||.|+|+|-+.||++|.. +.|.++++ .+++||-|+.-| +.++..+|-.- ..
T Consensus 57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~~~-----~~~~~~~~~~~-~~ 120 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLKE-LG 120 (185)
T ss_pred CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----CHHHHHHHHHH-cC
Confidence 345666666 7999999999999999765 56655432 258999987511 12223344322 24
Q ss_pred CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245 413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 457 (706)
+||..+.+.. . ..+.+.|++.++|..+++|++|+++...
T Consensus 121 ~~~~~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 121 NPYALSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCceEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 5766544422 1 2244678999999999999999988543
No 29
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.91 E-value=5.7e-05 Score=70.42 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=71.0
Q ss_pred CCCCceeecceecC-cEEEEEE-ecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245 333 CPTKRKVSIDVLRR-KSVLLLV-SDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA 408 (706)
Q Consensus 333 g~~~~kV~Is~L~g-K~VlL~f-Sal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~ 408 (706)
..+|+.+++++++| |.+.|+| .+.||+.|-. +.|.++|++++. .++.+|.|+. | +.+..++|-.
T Consensus 14 ~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~v~vi~vs~-d-----~~~~~~~~~~ 81 (149)
T cd03018 14 DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA------AGAEVLGISV-D-----SPFSLRAWAE 81 (149)
T ss_pred CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh------CCCEEEEecC-C-----CHHHHHHHHH
Confidence 34688999999999 8777666 5899877754 679999999962 3588999974 3 1334455543
Q ss_pred hhcCCCceeeccCCCCCHHHHHHHHHhhCCC----CC--cEEEEECCCCceecc
Q 005245 409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----KK--PILVVLDPQGRVVNQ 456 (706)
Q Consensus 409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~i--P~LVvL~pqGkv~~~ 456 (706)
-+ ..+|..+- |....+.+.+.|++. ++ |..+++|++|+++-.
T Consensus 82 ~~-~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 82 EN-GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred hc-CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 32 34554332 222124455567776 33 389999999998865
No 30
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.91 E-value=0.00013 Score=89.65 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCceeec-ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH---HHHH
Q 005245 335 TKRKVSI-DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH---KFEA 408 (706)
Q Consensus 335 ~~~kV~I-s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~---~Fe~ 408 (706)
++..+.+ ++++||.|+|.|.|.||++|.. |.|.++|++.+ +.+|+||-|+..+- -.+++.+ .|-
T Consensus 408 ~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~------~~~~~vvgV~~~~~---D~~~~~~~~~~~~- 477 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK------DQPFTVVGVHSAKF---DNEKDLEAIRNAV- 477 (1057)
T ss_pred CCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC------CCCeEEEEEecccc---cccccHHHHHHHH-
Confidence 3567776 5899999999999999998765 78999999885 34599999975321 0122222 332
Q ss_pred hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
....++|..+.-.. . .+-+.|+++++|+++++|++|+++..
T Consensus 478 ~~~~i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 478 LRYNISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHhCCCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence 24567776554321 2 34467899999999999999999743
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.91 E-value=1.6e-05 Score=75.62 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCC--CC-cChhhHHHHHH
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRS--TP-WTEAKEHKFEA 408 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s--~~-w~D~de~~Fe~ 408 (706)
.+|+.++++.++||.|+|+|=+.||+ |.. +.|+++|++.+. .+++||-|++ |.. .+ =+.++-++|-.
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~------~~~~vv~v~~-~~~~~~~~~~~~~~~~f~~ 81 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD------RGLVVLGFPC-NQFGGQEPGSNEEIKEFCE 81 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC------CCEEEEEecc-CccccCCCCCHHHHHHHHH
Confidence 46789999999999999999999976 544 789999999862 3589998875 110 00 01233455643
Q ss_pred --hhcCCCceeec--cCCCCCHHHHHHHHHhh------CCCCCcEEEEECCCCceecc
Q 005245 409 --LQYMMPWFSVH--HPSAIDPAVIRYAKEKW------DFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 409 --~~~~MPWyAVp--f~~~id~~~~r~ike~~------~~~~iP~LVvL~pqGkv~~~ 456 (706)
+.-+.|.++-+ ..... ....+++.... ..+..|+.+++|++|+++..
T Consensus 82 ~~~~~~fp~~~d~d~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 82 TNYGVTFPMFAKIDVNGENA-HPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HhcCCCceeeeeEeccCCCC-ChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 22234544321 11100 11222211111 12223389999999999864
No 32
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.87 E-value=4.7e-05 Score=72.06 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=70.8
Q ss_pred CCCCceeecceecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
+.+|..+++++++||.++|+|=+.| ||.| +++.|.+.|+++++ .++++|-|++ | +.+.-.+|-+-
T Consensus 17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~~~~~~~~~~~ 84 (154)
T PRK09437 17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----KPEKLSRFAEK 84 (154)
T ss_pred CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHH
Confidence 3567789999999999999998765 4334 55789999999973 3588988875 2 34444455433
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCCCC------------cEEEEECCCCceecc
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKK------------PILVVLDPQGRVVNQ 456 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~i------------P~LVvL~pqGkv~~~ 456 (706)
. ..||-.+.-+ . +.+.+.|++... |..++|||+|+++..
T Consensus 85 ~-~~~~~~l~D~-----~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 85 E-LLNFTLLSDE-----D--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred h-CCCCeEEECC-----C--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 3 4566554322 1 234455676543 678999999999864
No 33
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.87 E-value=0.00014 Score=73.19 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccC-CCCc-ChhhHHHHHHh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR-STPW-TEAKEHKFEAL 409 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~-s~~w-~D~de~~Fe~~ 409 (706)
.+|+.|.++.++||.|+|.|=+.||++| +.+.|.++|++.+ +.+++||-||+-+. ..+. +.++-++|-.
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~------~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~- 99 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFN------PLGLEILAFPTSQFLNQEFPNTKDIRKFND- 99 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHh------cCceEEEEecchhccCCCCCCHHHHHHHHH-
Confidence 4578999999999999999999998876 5688999999996 34599999986210 0011 1233445543
Q ss_pred hcCCCceeec-----cCCCCCHHHHHHHHH----hhCCCCC-------cEEEEECCCCceecc
Q 005245 410 QYMMPWFSVH-----HPSAIDPAVIRYAKE----KWDFRKK-------PILVVLDPQGRVVNQ 456 (706)
Q Consensus 410 ~~~MPWyAVp-----f~~~id~~~~r~ike----~~~~~~i-------P~LVvL~pqGkv~~~ 456 (706)
...++|..+- -+. ..++.+++++ .++..+. |.-+++|++|+++..
T Consensus 100 ~~~~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 100 KNKIKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred HcCCCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 2345554321 011 2345666653 2333322 378999999999953
No 34
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.80 E-value=0.0001 Score=71.82 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=63.9
Q ss_pred eeeccee-cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245 338 KVSIDVL-RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF 416 (706)
Q Consensus 338 kV~Is~L-~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy 416 (706)
.+..+.+ +||.|+|+|.+.||++|... ...++++.+ .+++||.|+.-+ +.++..+|-+- ..+||.
T Consensus 54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~--~p~l~~l~~------~~~~vi~V~~~~-----~~~~~~~~~~~-~~~~f~ 119 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWASWCPPCRAE--HPYLNELAK------DGLPIVGVDYKD-----QSQNALKFLKE-LGNPYQ 119 (173)
T ss_pred ccCHHHhcCCCEEEEEEECCcCHHHHHH--HHHHHHHHH------cCCEEEEEECCC-----ChHHHHHHHHH-cCCCCc
Confidence 4555565 79999999999999998752 223344432 248999997511 12222344322 246776
Q ss_pred eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
.+.+.. . ..+.+.|++.+.|..+++|++|+++..
T Consensus 120 ~v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 120 AILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred eEEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 554422 1 234556899999999999999998854
No 35
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.77 E-value=0.00011 Score=72.85 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred eeecceecCcEEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh---c
Q 005245 338 KVSIDVLRRKSVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ---Y 411 (706)
Q Consensus 338 kV~Is~L~gK~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~---~ 411 (706)
.++.++++||.|+|+|= +.||+. .+++.|.+.|+++++ .+++||.||. |+ ....+.|.... .
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D~-----~~~~~~~~~~~~~~~ 90 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-DT-----HFVHKAWHDTSEAIG 90 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-CC-----HHHHHHHHhhhhhcc
Confidence 57888999999999998 888655 455789999999973 3689999985 31 23345554322 2
Q ss_pred CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceeccc
Q 005245 412 MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 412 ~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 457 (706)
.+|+.. +.|. ...+.+.|++. ..|..+++|++|++....
T Consensus 91 ~l~fpl-----lsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 91 KITYPM-----LGDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred CcceeE-----EECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 444322 2232 24555666775 359999999999998654
No 36
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.76 E-value=0.00014 Score=72.83 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCceeecceecCcEEEEEEe-cCCCC--hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245 335 TKRKVSIDVLRRKSVLLLVS-DLDVS--NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY 411 (706)
Q Consensus 335 ~~~kV~Is~L~gK~VlL~fS-al~~~--~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~ 411 (706)
....+.+++++||.|.|+|= +.||+ +.|++.|.+.|++++. .+++||-||. |+ -...+.|-+-..
T Consensus 20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~------~g~~vigIS~-D~-----~~~~~a~~~~~~ 87 (187)
T PRK10382 20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK------LGVDVYSVST-DT-----HFTHKAWHSSSE 87 (187)
T ss_pred cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh------CCCEEEEEeC-CC-----HHHHHHHHHhhc
Confidence 45688889999999988887 88854 4566789999999963 4599999985 42 334566754332
Q ss_pred CCCceeeccCCCCCHHHHHHHHHhhCC----CCC--cEEEEECCCCceecc
Q 005245 412 MMPWFSVHHPSAIDPAVIRYAKEKWDF----RKK--PILVVLDPQGRVVNQ 456 (706)
Q Consensus 412 ~MPWyAVpf~~~id~~~~r~ike~~~~----~~i--P~LVvL~pqGkv~~~ 456 (706)
.+ ..+|||=+.|. -+.+.+.|++ .+. |..+|+||+|++...
T Consensus 88 ~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 88 TI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred cc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 22 34555533332 4566777787 466 999999999998654
No 37
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.73 E-value=0.00022 Score=71.35 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-h
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-L 409 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~ 409 (706)
.+++.+.+++++||.|+|+|-..+ +|+.++..|.+.|+++++ .+++||.|+. |+ ......+.. .
T Consensus 24 ~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d~-----~~~~~~~~~~~ 91 (199)
T PTZ00253 24 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-DS-----EYAHLQWTLQE 91 (199)
T ss_pred CCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-CC-----HHHHHHHHhCh
Confidence 355789999999999999998643 455566789999999973 4699999986 32 222223221 1
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCC----C--CcEEEEECCCCceec
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----K--KPILVVLDPQGRVVN 455 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~--iP~LVvL~pqGkv~~ 455 (706)
+...-.-.++||-..|. .+.+.+.|++. + .|..++|||+|++..
T Consensus 92 ~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 92 RKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 11100112344433333 34555667764 3 589999999999876
No 38
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.65 E-value=0.00022 Score=66.40 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=67.0
Q ss_pred CCCceeecceecCcEEEEEEecCC-CCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLD-VSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~-~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
.+|..+++++++||.|.|+|=+.| |++ .+++.|.+.|++.+ +++||-|+. | +....++|.+-
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~~~~~~~~~~~- 78 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----LPFAQKRWCGA- 78 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----CHHHHHHHHHh-
Confidence 456789999999999999999988 444 45577988888752 488888874 3 13334455443
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCceeccc
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVNQN 457 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~n 457 (706)
+....+|.-+ |.. .+.+.+.|++.. .|...++|++|+++...
T Consensus 79 --~~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 79 --EGVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred --cCCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 3221122211 211 133444556643 68999999999998654
No 39
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.64 E-value=0.00026 Score=65.45 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCceeecceec-Cc-EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 334 PTKRKVSIDVLR-RK-SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 334 ~~~~kV~Is~L~-gK-~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
.+|+.++++++. +| .|++||-+.||+.|.. +.|.+.|++++. .+++||-|+. | +.+....|-+-
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~-~-----~~~~~~~~~~~ 77 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGP-E-----SPEKLEAFDKG 77 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeC-C-----CHHHHHHHHHh
Confidence 457789998875 34 5566667999888655 679999999962 4589999874 2 12222234321
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCC-----------------------------CCcEEEEECCCCceec
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-----------------------------KKPILVVLDPQGRVVN 455 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~-----------------------------~iP~LVvL~pqGkv~~ 455 (706)
...||.. ..|.. +.+-+.|++. ..|..+|+|++|++.-
T Consensus 78 -~~~~~p~-----~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 78 -KFLPFPV-----YADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred -cCCCCeE-----EECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 1223322 22332 3344556763 7999999999999874
No 40
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.53 E-value=0.00037 Score=70.21 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=66.9
Q ss_pred eeecceecCcEEEE-EEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH----HHhh
Q 005245 338 KVSIDVLRRKSVLL-LVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF----EALQ 410 (706)
Q Consensus 338 kV~Is~L~gK~VlL-~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F----e~~~ 410 (706)
.+++++++||.|.| +|-+.||+.| |+..|.+.|+++++ .+++||-||+ |+ ......| .+-.
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D~-----~~~~~~w~~~~~~~~ 86 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-DS-----IYSHIAWLRDIEERF 86 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-CC-----HHHHHHHHHhHHHhc
Confidence 68999999998777 5788896554 55789999999973 3599999986 31 2222222 2222
Q ss_pred c-CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245 411 Y-MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 411 ~-~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~ 456 (706)
. .+||..+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 87 g~~~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 87 GIKIPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred CCCceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 2 23433332 332 3455667874 48999999999998743
No 41
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.53 E-value=0.00053 Score=67.56 Aligned_cols=110 Identities=16% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCCceeecceecCcEEEEEEecCCCC---hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh--hhHHHHH
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVS---NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKFE 407 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~---~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D--~de~~Fe 407 (706)
..+|+.|..++++||.++++|--..|| |-.+..|.++.+++.+ .+.++++|+|++ | |..| +.-++|-
T Consensus 39 d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~----~~~~v~~v~ISv-D---P~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 39 DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE----EGKDVQFVFISV-D---PERDTPEVLKKYA 110 (174)
T ss_dssp ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH----TTTTEEEEEEES-S---TTTC-HHHHHHHH
T ss_pred cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh----ccCceEEEEEEe-C---CCCCCHHHHHHHH
Confidence 357889999999999999999777664 4455689999999985 366899999997 5 3444 3456666
Q ss_pred HhhcCCCceeeccCCCCCHHHHHHHHHhhCCC----------------CCcEEEEECCCCceec
Q 005245 408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----------------KKPILVVLDPQGRVVN 455 (706)
Q Consensus 408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----------------~iP~LVvL~pqGkv~~ 455 (706)
..+. -.|..+-+ +.+.++.+.+.|++. .-..+.++||+|++..
T Consensus 111 ~~~~-~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 111 KKFG-PDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HCHT-TTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HhcC-CCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 6554 35666665 245566666666642 2347889999999874
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.50 E-value=0.00041 Score=66.18 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=54.4
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 421 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~ 421 (706)
-+||.|+|+|.+.||++|.. +.|.+++++.+ ..+.++.|-+ |.+ .+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~v--------d~~--~~--------------- 65 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNV--------DNP--KW--------------- 65 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEc--------CCc--cc---------------
Confidence 36899999999999999875 57888777663 3477888754 211 11
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
..+.+.|+++++|++++++++|+++..
T Consensus 66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred --------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 013467899999999999999998854
No 43
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.45 E-value=0.00054 Score=66.75 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=74.6
Q ss_pred CCCCcccc--CCCCceeecceecCcEEEEEEecCC-CCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC
Q 005245 325 DDQLPLVE--CPTKRKVSIDVLRRKSVLLLVSDLD-VSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT 399 (706)
Q Consensus 325 ~~~~pl~d--g~~~~kV~Is~L~gK~VlL~fSal~-~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~ 399 (706)
++..|-|. ..+|+.|++++++||.|.|+|=+.| |++ .+++.|.+.|++++ +++||=|+. | +
T Consensus 21 G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~-D-----~ 86 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISA-D-----L 86 (167)
T ss_pred CCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeC-C-----C
Confidence 34445443 2457789999999999999999988 644 55577888887762 588998875 3 1
Q ss_pred hhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------EEEEECCCCceecccH
Q 005245 400 EAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQNA 458 (706)
Q Consensus 400 D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~nA 458 (706)
....++|-+-. ..+- ++-+.|.. -+.+.+.|++.+.| ...++|++|+++....
T Consensus 87 ~~~~~~f~~~~-~~~~----~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAE-GLEN----VITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhC-CCCC----ceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 33456676543 2331 11111211 22445567887777 9999999999986653
No 44
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.31 E-value=0.00025 Score=74.90 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245 335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 412 (706)
Q Consensus 335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~ 412 (706)
.++...++.|+||.++++|.+.||++|.. +.|.+++++- .++|+.|++ | .+.. ..
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D-------~~~~------~~ 211 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-D-------GGPL------PG 211 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-C-------CCcc------cc
Confidence 34457889999999999999999988875 6777776664 289999986 3 2111 11
Q ss_pred CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccH
Q 005245 413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA 458 (706)
Q Consensus 413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA 458 (706)
+|-+ -. + +-+.+.|+++++|++++++++|+.+..-+
T Consensus 212 fp~~---~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~ 247 (271)
T TIGR02740 212 FPNA---RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG 247 (271)
T ss_pred CCcc---cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence 2221 11 1 22467889999999999999765554433
No 45
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.28 E-value=0.0007 Score=68.02 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH
Q 005245 327 QLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH 404 (706)
Q Consensus 327 ~~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~ 404 (706)
.+|-|.=.+|+.+.++.++ +++|-+.|||+|.. +.|+++|++.+ |+|+-|++ | .+.
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~-D-------~~~- 111 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTL-D-------GQG- 111 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEe-C-------CCC-
Confidence 4666776788999999998 66788999987655 78999988862 89999986 3 111
Q ss_pred HHHHhhcCCCceeeccCCCCC-HHHHHHHHHhhCC--CCCcEEEEECCCCceecc
Q 005245 405 KFEALQYMMPWFSVHHPSAID-PAVIRYAKEKWDF--RKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 405 ~Fe~~~~~MPWyAVpf~~~id-~~~~r~ike~~~~--~~iP~LVvL~pqGkv~~~ 456 (706)
.+.||-.++ .. ..+.+.|+. .++|+.+++|++|+++-+
T Consensus 112 ------------~~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 112 ------------DTAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred ------------CCCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 035555442 22 345667784 699999999999998643
No 46
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.27 E-value=0.00082 Score=59.83 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=54.5
Q ss_pred cCcEEEEEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+||+++++|++.||+.|... .+.+.- ++... ..++|.++.+.+ +.+.+ ..+.-+... .. +++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~------~~~~~-~~~~~~~~~---~~-~~~- 67 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDN-DVARY---LKDDFQVIFVNI------DDSRD-ESEAVLDFD---GQ-KNV- 67 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHH-HHHCE---EHCECEEEECES------HSHHH-HHHHHHSHT---CH-SSC-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHH-HHHHH---hhcCeEEEEEec------CCccc-ccccccccc---cc-hhh-
Confidence 58999999999999999863 233332 33311 234688888877 22222 222211100 00 111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
....+.+.+.|++.+-|++|++|++|+++.
T Consensus 68 ---~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 68 ---RLSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp ---HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred ---hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 234557889999999999999999999763
No 47
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.20 E-value=0.0014 Score=69.23 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=88.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhccchhHHHHHhhhcccCCCCCccccCC-----CCceeeccee-cCcEEEEEEe-cC
Q 005245 284 LCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECP-----TKRKVSIDVL-RRKSVLLLVS-DL 356 (706)
Q Consensus 284 ~c~~~I~~~~~~e~y~~l~~lf~~~~~D~~~vL~k~LI~~k~~~~pl~dg~-----~~~kV~Is~L-~gK~VlL~fS-al 356 (706)
.|.+-.++.... ..++-.+.|-+. -+.|.--...+ .++..|-|... .+..++++++ +||.|.|||= +.
T Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~---vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ 109 (261)
T PTZ00137 35 NCFKSVDRISSL-KSVNGVRNYSTS-EGLCNTVTSSL---VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLD 109 (261)
T ss_pred hhccchhhHHHH-HHHHHHHhccCC-ccccccccccc---CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCC
Confidence 466555552111 123455566554 23333220222 33444544421 2346899997 8987777776 77
Q ss_pred CCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh-hcCCCceeeccCCCCCHHHHHHHH
Q 005245 357 DVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL-QYMMPWFSVHHPSAIDPAVIRYAK 433 (706)
Q Consensus 357 ~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~-~~~MPWyAVpf~~~id~~~~r~ik 433 (706)
||+. .|++.|.+.|+++++ .++|||=||+ |+ -...+.|.+. ...+--.-++||=+.|.. +.+.
T Consensus 110 ftpvCt~El~~l~~~~~ef~~------~gv~VigIS~-Ds-----~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~ia 175 (261)
T PTZ00137 110 FTFVCPSELLGFSERLKEFEE------RGVKVLGVSV-DS-----PFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVS 175 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-CC-----HHHHHHHHhhhhhhccccCcceEEEEcCC--hHHH
Confidence 8554 566789999999973 4599999986 31 2234556542 222112222332222322 4566
Q ss_pred HhhCCC-----CCcEEEEECCCCceeccc
Q 005245 434 EKWDFR-----KKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 434 e~~~~~-----~iP~LVvL~pqGkv~~~n 457 (706)
+.|++. ..|...++||+|++....
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 677774 489999999999988643
No 48
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.20 E-value=0.0018 Score=61.06 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=52.2
Q ss_pred cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 345 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
++|.|+|+|++.||+.|.... -.++-+.+. .+|-.|-| |. |+.. ..
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~Vkv---D~-----~~~~-~~------------- 64 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKV---DR-----EERP-DV------------- 64 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEE---eC-----CcCc-HH-------------
Confidence 489999999999999998531 124444443 35765554 32 1111 01
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 457 (706)
.....++....|++.|.|++|++||+|++++..
T Consensus 65 -----~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 65 -----DKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred -----HHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 012234555578999999999999999999776
No 49
>PRK15000 peroxidase; Provisional
Probab=97.18 E-value=0.0024 Score=64.54 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=63.8
Q ss_pred cCcEEEEEEecC-CC--ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhc-----CCCc
Q 005245 345 RRKSVLLLVSDL-DV--SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQY-----MMPW 415 (706)
Q Consensus 345 ~gK~VlL~fSal-~~--~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~-----~MPW 415 (706)
+||.|.|+|=.. || |+.|++.|.+.|+++++ .+++||=||. | +....+.|.+ +.. .+||
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~g~~~i~f 100 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKGGIGPVKY 100 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhCCccccCc
Confidence 799999999886 54 55677889999999973 3599999985 3 1333344432 222 2344
Q ss_pred eeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245 416 FSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 416 yAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~ 456 (706)
..+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 101 plls-----D~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 101 AMVA-----DVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred eEEE-----CCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 4333 222 4556677876 69999999999999874
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.16 E-value=0.0017 Score=57.57 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=50.8
Q ss_pred cCcEEEEEEecCCCChhHHH--HH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 345 RRKSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~--~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
+||.|+++|++.||++|... .+ .++.+.++ +++.++.|-+ ++.+
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~-------~~~~----------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADW-------TKND----------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEec-------CCCC-----------------
Confidence 58999999999999999874 23 35655553 2566666632 2110
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECC-CCcee
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVV 454 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~p-qGkv~ 454 (706)
.....+.+.|++.++|+++++++ +|+++
T Consensus 59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred -------HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 12345667789999999999999 89876
No 51
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.13 E-value=0.0028 Score=61.82 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=52.4
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.++.++++|-+.||++|.. |.|.++|++. +++|+.|++ | +...+.| | +.++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~-d------~~~~~~f-------p---~~~~~ 102 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSL-D------GQGLTGF-------P---DPLPA 102 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEe-C------CCccccc-------c---cccCC
Confidence 3455699999999988765 7899988764 288999976 2 1111111 1 22221
Q ss_pred CCCHHHHHHHHHhh---CCCCCcEEEEECCCCceec
Q 005245 423 AIDPAVIRYAKEKW---DFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 423 ~id~~~~r~ike~~---~~~~iP~LVvL~pqGkv~~ 455 (706)
+.. .+...+ ++.++|+.+++|++|+++-
T Consensus 103 --~~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 --TPE---VMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred --chH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 122 233445 7899999999999988643
No 52
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.13 E-value=0.0021 Score=64.70 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=69.4
Q ss_pred eeecceecC-cEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhcC
Q 005245 338 KVSIDVLRR-KSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM 412 (706)
Q Consensus 338 kV~Is~L~g-K~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~~ 412 (706)
++.+++++| |.| +++|-+.|||.|. +..|.+.|+++++ .+.+|+-|++ |+ .....+|.+ ..+.
T Consensus 16 ~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D~-----~~~~~~~~~~i~~~ 83 (203)
T cd03016 16 PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-DS-----VESHIKWIEDIEEY 83 (203)
T ss_pred cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-CC-----HHHHHHHHhhHHHh
Confidence 689999998 655 4467788876654 4679999999973 3589999986 31 333344432 3333
Q ss_pred CCceeeccCCCCCHHHHHHHHHhhCCC----CC----cEEEEECCCCceecc
Q 005245 413 MPWFSVHHPSAIDPAVIRYAKEKWDFR----KK----PILVVLDPQGRVVNQ 456 (706)
Q Consensus 413 MPWyAVpf~~~id~~~~r~ike~~~~~----~i----P~LVvL~pqGkv~~~ 456 (706)
+. +.++||-..|.. +.+.+.|++. +. |..+|+||+|++...
T Consensus 84 ~~-~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 84 TG-VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred cC-CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 33 566676444433 4566677765 33 469999999998754
No 53
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.07 E-value=0.0012 Score=60.49 Aligned_cols=83 Identities=22% Similarity=0.375 Sum_probs=54.3
Q ss_pred cC-cEEEEEEecCCCChhHHH--HH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245 345 RR-KSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 418 (706)
Q Consensus 345 ~g-K~VlL~fSal~~~~~e~~--~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV 418 (706)
+| |.|+++|++.||++|... .+ ..+.+.++ ++|.++-|.+ |. +.....|+.
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~-d~-----~~~~~~~~~---------- 68 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINI-DG-----DKEVTDFDG---------- 68 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEc-cC-----CceeeccCC----------
Confidence 46 899999999999998863 33 24555553 3577777754 21 111111211
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-Cceecc
Q 005245 419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQ 456 (706)
Q Consensus 419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~ 456 (706)
. ....+.+...|++++.|++++++++ |+++..
T Consensus 69 ----~--~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 69 ----E--ALSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred ----C--CccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 0 1124567788899999999999999 888743
No 54
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.94 E-value=0.0029 Score=63.79 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEE------EEEecccCCCCcChhhHH
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEV------VWLPIVDRSTPWTEAKEH 404 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEI------VwIpiVd~s~~w~D~de~ 404 (706)
+-+.+.++.+.|+||.+++-|-|.||++|+. |.|..+ ++ .+|.+ +=|.. |. ..|. -.
T Consensus 46 ~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~-dd-~~~~---~~ 110 (184)
T TIGR01626 46 DTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINA-DD-AIVG---TG 110 (184)
T ss_pred cccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEEC-cc-chhh---HH
Confidence 3455678889999999999999999999887 678777 32 13555 55553 21 0111 12
Q ss_pred HH-----HHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEE-EEECCCCceecc
Q 005245 405 KF-----EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPIL-VVLDPQGRVVNQ 456 (706)
Q Consensus 405 ~F-----e~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~L-VvL~pqGkv~~~ 456 (706)
.| ++....-||-.+-.. ..+ .+...|++.+.|.- +|+|++|+++..
T Consensus 111 ~fVk~fie~~~~~~P~~~vllD----~~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 111 MFVKSSAKKGKKENPWSQVVLD----DKG--AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred HHHHHHHHHhcccCCcceEEEC----Ccc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 23 445667898766653 332 34558999999888 799999998853
No 55
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.85 E-value=0.0052 Score=62.88 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=69.9
Q ss_pred CCCccccC--CCCceeec-ceecCcEEEE-EEecCCCC--hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC
Q 005245 326 DQLPLVEC--PTKRKVSI-DVLRRKSVLL-LVSDLDVS--NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT 399 (706)
Q Consensus 326 ~~~pl~dg--~~~~kV~I-s~L~gK~VlL-~fSal~~~--~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~ 399 (706)
+..|-|.. ..| ++.. +.++||.|.| +|=+.||+ +.|+..|.+.|+++++ .+.+||=||+ |+
T Consensus 11 ~~aPdF~l~~~~G-~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-Ds----- 77 (215)
T PRK13191 11 EKFPEMEVITTHG-KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-DS----- 77 (215)
T ss_pred CcCCCCEeecCCC-CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-CC-----
Confidence 33454432 234 4566 5589997666 67788854 4566789999999973 3589999985 42
Q ss_pred hhhHHHHHHhhc-----CCCceeeccCCCCCHHHHHHHHHhhCCC-------CCcEEEEECCCCceecc
Q 005245 400 EAKEHKFEALQY-----MMPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 400 D~de~~Fe~~~~-----~MPWyAVpf~~~id~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 456 (706)
......|.+... ..||..+- |.. +.+.+.|++- ..|...||||+|++...
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPlls-----D~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPIIA-----DPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEEE-----CCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 333445543221 34443333 322 4555566752 37999999999998864
No 56
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.85 E-value=0.017 Score=58.07 Aligned_cols=124 Identities=10% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEecccC-CCC-cChhhHHHHHH--
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR-STP-WTEAKEHKFEA-- 408 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~-s~~-w~D~de~~Fe~-- 408 (706)
.+|..|++++++||.|++.|-|.||+.+ +.+.|.++|++.+ +.+|+||=||.-+- ..+ =+.++-+.|-.
T Consensus 13 ~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~------~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~ 86 (183)
T PRK10606 13 IDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWA------DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTT 86 (183)
T ss_pred CCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHh------hCCeEEEEeeccccccCCCCCHHHHHHHHHHc
Confidence 4667999999999999999999998765 4678999999986 24599999997210 000 12344455542
Q ss_pred hhcCCCce---eeccCCCCCHHHHHHHHHhhCCCCC----------------cE----------EEEECCCCceecccHH
Q 005245 409 LQYMMPWF---SVHHPSAIDPAVIRYAKEKWDFRKK----------------PI----------LVVLDPQGRVVNQNAL 459 (706)
Q Consensus 409 ~~~~MPWy---AVpf~~~id~~~~r~ike~~~~~~i----------------P~----------LVvL~pqGkv~~~nA~ 459 (706)
+--+.|=+ .|.-+. ..++-+||++....... |. =-++|++|+|+..
T Consensus 87 ~g~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r--- 161 (183)
T PRK10606 87 WGVTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR--- 161 (183)
T ss_pred cCCCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE---
Confidence 22223322 111111 23588999875543211 11 4678999999864
Q ss_pred HHHHHhCcccccCC
Q 005245 460 HMMWIWGSVAFPFS 473 (706)
Q Consensus 460 ~mI~~wG~~AFPFT 473 (706)
|+...-|-+
T Consensus 162 -----~~~~~~p~~ 170 (183)
T PRK10606 162 -----FSPDMTPED 170 (183)
T ss_pred -----ECCCCCCCH
Confidence 787888854
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.70 E-value=0.0071 Score=54.15 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=47.4
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 421 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~ 421 (706)
-+||.|+|.|.+.||++|.. +.|.++.++. .+ ++|+-+ |. |++.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--------~~--v~~~~v-d~-----d~~~------------------ 58 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--------ND--VVFLLV-NG-----DEND------------------ 58 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--------CC--CEEEEE-EC-----CCCh------------------
Confidence 35899999999999999875 5566665544 12 455544 21 2211
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
..+.+.+.|++++.|+++++ .+|+++
T Consensus 59 ------~~~~l~~~~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 59 ------STMELCRREKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred ------HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence 12345677899999998777 789876
No 58
>PRK13189 peroxiredoxin; Provisional
Probab=96.65 E-value=0.0094 Score=61.25 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=63.4
Q ss_pred eeecce-ecCcEEEE-EEecCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhcC
Q 005245 338 KVSIDV-LRRKSVLL-LVSDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM 412 (706)
Q Consensus 338 kV~Is~-L~gK~VlL-~fSal~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~~ 412 (706)
++.+++ ++||.|.| +|=+.||+. .|+..|.+.|+++++ .+.+||-||+ |+ .....+|-+ +...
T Consensus 26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D~-----~~~h~aw~~~~~~~ 93 (222)
T PRK13189 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-DQ-----VFSHIKWVEWIKEK 93 (222)
T ss_pred CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-CC-----HHHHHHHHHhHHHh
Confidence 466655 69996655 667888655 556789999999973 4589999986 31 223334433 2221
Q ss_pred CCceeeccCCCCCHHHHHHHHHhhCCC-------CCcEEEEECCCCceecc
Q 005245 413 MPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 413 MPWyAVpf~~~id~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 456 (706)
.. ..++||=..|.. +.+.+.|++. ..|..+++||+|++...
T Consensus 94 ~g-~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 94 LG-VEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred cC-cCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 00 012333222222 3455566754 46999999999998643
No 59
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.63 E-value=0.0078 Score=61.64 Aligned_cols=109 Identities=10% Similarity=0.029 Sum_probs=70.8
Q ss_pred CCCceeecceecCcEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245 334 PTKRKVSIDVLRRKSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~ 410 (706)
..|+.+..+.++||.| +++|=+.|||.|- +..|.+.|++++. .+++||=||. |+ ......|.+..
T Consensus 16 ~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D~-----~~~~~~w~~~i 83 (215)
T PRK13599 16 TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-DQ-----VFSHIKWVEWI 83 (215)
T ss_pred CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-CC-----HHHHHHHHHhH
Confidence 4566677789999975 6688888876654 4679999999973 3589999985 31 33455564432
Q ss_pred cCCCceeeccCCCCCHHHHHHHHHhhCC-------CCCcEEEEECCCCceecc
Q 005245 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDF-------RKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 411 ~~MPWyAVpf~~~id~~~~r~ike~~~~-------~~iP~LVvL~pqGkv~~~ 456 (706)
..+-=+.++||=..|.. +.+.+.|++ ...|...|+||+|++...
T Consensus 84 ~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 84 KDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 21100134454333322 234556666 357999999999999865
No 60
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.62 E-value=0.0045 Score=57.37 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=17.9
Q ss_pred ecCcEEEEEEecCCCChhHH
Q 005245 344 LRRKSVLLLVSDLDVSNEEL 363 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~ 363 (706)
-+||.|+|.|++.||++|..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~ 36 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKA 36 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHH
Confidence 35899999999999999986
No 61
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.57 E-value=0.012 Score=50.96 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+||.|+++|.+.||++|.. +.|.++++... +. +.++-+ | .++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~--~~~~~v-d-------~~~------------------- 54 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQ--FVLAKV-N-------CDA------------------- 54 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------Cc--EEEEEE-e-------ccC-------------------
Confidence 4789999999999999885 56777766653 22 445544 2 111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
.+.+.+.|++++.|++++++ +|+.+
T Consensus 55 ------~~~l~~~~~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 55 ------QPQIAQQFGVQALPTVYLFA-AGQPV 79 (96)
T ss_pred ------CHHHHHHcCCCCCCEEEEEe-CCEEe
Confidence 12356778999999999997 89875
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.33 E-value=0.0084 Score=53.76 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=47.0
Q ss_pred ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 342 DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 342 s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
+.++||.|++.|.+.||++|.. +.|.++.++.+ ++ .++-+ | .+. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~--~~~~v-d-------~~~---------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QI--RHLAI-E-------ESS---------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cC--ceEEE-E-------CCC---------------C
Confidence 3578999999999999988875 67777776653 23 34433 3 110 1
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECCC
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ 450 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pq 450 (706)
+ ..+.+.|++++.|+++++++.
T Consensus 61 ~---------~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 K---------PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred C---------HHHHHhcCCeecCEEEEEcCC
Confidence 1 145577899999999999754
No 63
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.28 E-value=0.02 Score=50.43 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=48.2
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.+|.|+++|++.||+.|.. +.|.++.+++. +++.++.|-+ |++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--------d~~~------------------- 57 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--------DEDQ------------------- 57 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCCH-------------------
Confidence 4789999999999999875 57888777763 2455555522 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
-+.+.+++.+.|+++++. +|+++
T Consensus 58 --------~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 58 --------EIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred --------HHHHHCCCeeccEEEEEE-CCeEE
Confidence 144567899999999995 78887
No 64
>PRK10996 thioredoxin 2; Provisional
Probab=96.13 E-value=0.024 Score=53.89 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=48.6
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
++|.|+|+|++.||++|.. +.|.+++++.. ++ +.|+-+ |. |+.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~--v~~~~v-d~-----~~~-------------------- 95 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GK--VRFVKV-NT-----EAE-------------------- 95 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CC--eEEEEE-eC-----CCC--------------------
Confidence 4899999999999999875 56777776653 23 555543 21 110
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
..+.+.|++++.|+++++. +|+.+..
T Consensus 96 -------~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 96 -------RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred -------HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 2356788999999999885 8987753
No 65
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.13 E-value=0.019 Score=54.08 Aligned_cols=78 Identities=9% Similarity=0.164 Sum_probs=54.5
Q ss_pred cCcEEEEEEec-------CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245 345 RRKSVLLLVSD-------LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW 415 (706)
Q Consensus 345 ~gK~VlL~fSa-------l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW 415 (706)
+||.|.++|+| .||++|.. +.|.++.++.+ .+..++.|=+ |....|.|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdv-d~~~~w~d~-------------- 77 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDV-GDRPYWRDP-------------- 77 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEc-CCcccccCc--------------
Confidence 58899999999 99999996 67888877763 2356666632 211111111
Q ss_pred eeeccCCCCCHHHHHHHHHhhCCC-CCcEEEEECCCCceeccc
Q 005245 416 FSVHHPSAIDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQN 457 (706)
Q Consensus 416 yAVpf~~~id~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~n 457 (706)
...+...++++ ++|+++++...++++.++
T Consensus 78 -------------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 78 -------------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred -------------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence 12344567888 999999999888888766
No 66
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.07 E-value=0.011 Score=51.06 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.9
Q ss_pred ceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhhh
Q 005245 506 QKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRIIS 557 (706)
Q Consensus 506 gK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~~ 557 (706)
||+++|||.+.+ ..|+++.+.+.++++..+ ..+++|+|+.|...+..++.++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~ 55 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLK 55 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHH
Confidence 899999999942 345999999999988755 9999999999977676655443
No 67
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.02 E-value=0.019 Score=49.83 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=46.6
Q ss_pred EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 348 SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 348 ~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
.|+|+|.+.||++|.. +.+.+++++.+. ...++.++-| | .+. .
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~v---d-------~~~----------------~----- 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKV---D-------CTQ----------------H----- 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEE---E-------CCC----------------C-----
Confidence 4999999999999886 678888888862 1234555544 2 111 0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
..+.+.|++++.|+++++ ++|+.+
T Consensus 63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 ----RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 134556899999999999 677754
No 68
>PTZ00051 thioredoxin; Provisional
Probab=95.91 E-value=0.022 Score=49.39 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=46.1
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.+|.|+|+|.+.||++|.. +.|.++.++. . ++.|+.+ |.++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--------~--~~~~~~v--------d~~~------------------- 59 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEY--------T--KMVFVKV--------DVDE------------------- 59 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--------C--CcEEEEE--------ECcc-------------------
Confidence 3789999999999999886 3455555432 1 2566655 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
...+.+.|++++.|+++++ .+|+++.
T Consensus 60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~ 85 (98)
T PTZ00051 60 ------LSEVAEKENITSMPTFKVF-KNGSVVD 85 (98)
T ss_pred ------hHHHHHHCCCceeeEEEEE-eCCeEEE
Confidence 1245677899999998877 6888763
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.76 E-value=0.044 Score=49.83 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=51.0
Q ss_pred eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245 343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 420 (706)
Q Consensus 343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf 420 (706)
...||.|+++|.+.||++|.. +.+.++.++++. . ++.+.-+ |. |.+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~--~v~~~~v-d~-----d~~------------------ 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------L--GVGIATV-NA-----GHE------------------ 68 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------c--CceEEEE-ec-----ccc------------------
Confidence 447899999999999999876 678888888752 2 2344433 21 211
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
+.+.+.|++++.|+++++ ++|+.+..
T Consensus 69 ---------~~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 69 ---------RRLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ---------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 235677899999999999 48887643
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.65 E-value=0.06 Score=48.03 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=45.8
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.||.|.|+|.+.||++|.. +.|.+++++.+ +.. +.|+-+ |. | ..
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~------~~~--~~~~~v-d~-----d-~~------------------- 61 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG------DDL--LHFATA-EA-----D-TI------------------- 61 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC------CCc--EEEEEE-eC-----C-CH-------------------
Confidence 4889999999999999885 56777777663 122 334432 21 2 10
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
+ +.+.|++++.|+++++. +|+.+
T Consensus 62 ----~----~~~~~~v~~~Pt~~~~~-~g~~~ 84 (102)
T cd02948 62 ----D----TLKRYRGKCEPTFLFYK-NGELV 84 (102)
T ss_pred ----H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence 1 23677999999998885 77655
No 71
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.52 E-value=0.076 Score=45.73 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=50.1
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
++|.+.++|.+.||++|.- +.|.++.+.++ .+.++.++.+.+ |+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~-----~~~~~~~~~~d~--------~~~-------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK-----GDPDIVLAKVDA--------TAE-------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhc-----cCCceEEEEEEc--------cch--------------------
Confidence 6899999999999999875 57777777664 222455555532 211
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
..+.+.+++++.|++++++++|.+
T Consensus 59 -------~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 59 -------KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred -------HHHHHhCCCCcCCEEEEecCCCcc
Confidence 235577899999999999988864
No 72
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.49 E-value=0.042 Score=48.81 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=46.9
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 421 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~ 421 (706)
.+++.|+++|.+.||++|.. +.|.+++++.+. .+ ..+.+..+ | .+. +
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~--~~~~~~~v-d-------~~~----------------~- 61 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS----SG--SPVRVGKL-D-------ATA----------------Y- 61 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh----cC--CcEEEEEE-E-------Ccc----------------C-
Confidence 35689999999999999885 689888888862 12 23555544 2 111 1
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEEC
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLD 448 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~ 448 (706)
..+.+.|++++.|+++++.
T Consensus 62 --------~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 --------SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred --------HhHHhhcCCccccEEEEEc
Confidence 1345678999999999994
No 73
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.42 E-value=0.063 Score=47.40 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=47.8
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.||.|+|+|.+.||++|.. +.+.++.++++ ..+.++.|-+ |.++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~--------~~~~------------------- 62 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDC--------DEDK------------------- 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEec--------Cccc-------------------
Confidence 3778999999999999875 46666666553 3466666633 2110
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR 452 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk 452 (706)
.+.+.+.|++++.|+++++++.|+
T Consensus 63 ------~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 ------NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123556789999999999998874
No 74
>PRK09381 trxA thioredoxin; Provisional
Probab=95.38 E-value=0.072 Score=47.46 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
+|.|+++|.+.||++|.. +.|.++.++.. +++.+.-|-+ |...
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------~~~~-------------------- 65 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQNP-------------------- 65 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEEC--------CCCh--------------------
Confidence 789999999999999885 67888887763 2354444422 2111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
.+.++|++++.|+++++ ++|+++.
T Consensus 66 -------~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 66 -------GTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred -------hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 13467899999999999 6898763
No 75
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.26 E-value=0.067 Score=46.21 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=45.5
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
+|.|+++|.+.||++|.. +.|.++.+++ . ..+.|+-+ |.++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-------~--~~i~~~~v--------d~~~-------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-------F--PSVLFLSI--------EAEE-------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-------C--CceEEEEE--------cccc--------------------
Confidence 699999999999999874 3454444443 1 24566544 2211
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
...+.+.|++.+.|+++++. +|+.+.
T Consensus 57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 82 (97)
T cd02984 57 -----LPEISEKFEITAVPTFVFFR-NGTIVD 82 (97)
T ss_pred -----CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence 12355678999999999995 888763
No 76
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.18 E-value=0.076 Score=45.43 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=45.4
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
+|.|.++|.+.||++|.. +.|.++.++.. ++..++.|=. |.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~--------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN--------------------- 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence 579999999999988876 45555554442 3466666622 111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
+.+.+.|++++.|+++++ ++|+++
T Consensus 58 ------~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 ------PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred ------HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 124466799999999999 678754
No 77
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.16 E-value=0.098 Score=47.14 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+||.|++.|.+.||++|.. +.+.++.++++ +.++.+.-|-+ |.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~------~~~~~~~~vd~--------d~~~------------------- 66 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA------GSNVKVAKFNA--------DGEQ------------------- 66 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc------cCCeEEEEEEC--------Cccc-------------------
Confidence 4799999999999999886 46777766664 22455555522 2100
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR 452 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk 452 (706)
..+.++.+++++.|+++++++.|+
T Consensus 67 ------~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 67 ------REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred ------hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 112234579999999999988764
No 78
>PHA02278 thioredoxin-like protein
Probab=95.05 E-value=0.057 Score=49.28 Aligned_cols=71 Identities=14% Similarity=0.351 Sum_probs=45.8
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+++.|+++|.|.||+||.. |.|.++-++. ..+.+++.|=+ | +..++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~-------~~~~~~~~vdv--------d--~~~~d--------------- 60 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG-------DIKKPILTLNL--------D--AEDVD--------------- 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh-------cCCceEEEEEC--------C--ccccc---------------
Confidence 5889999999999999996 4455543332 22345666633 2 11110
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
...+.+.|+++++|+++++. +|+.+
T Consensus 61 ------~~~l~~~~~I~~iPT~i~fk-~G~~v 85 (103)
T PHA02278 61 ------REKAVKLFDIMSTPVLIGYK-DGQLV 85 (103)
T ss_pred ------cHHHHHHCCCccccEEEEEE-CCEEE
Confidence 12256788999999999996 46554
No 79
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.18 Score=49.97 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=68.9
Q ss_pred CCCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 409 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~ 409 (706)
+.+|..|.+++++||.|.|||=--+..| | |.--+...|.+++. -+.+|+=||. | +-...++|.+-
T Consensus 17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~------~~a~V~GIS~-D-----s~~~~~~F~~k 84 (157)
T COG1225 17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK------LGAVVLGISP-D-----SPKSHKKFAEK 84 (157)
T ss_pred cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence 4556679999999999999997776333 3 33458888888863 3699999985 4 35677888763
Q ss_pred hcCCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceec
Q 005245 410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVN 455 (706)
Q Consensus 410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~ 455 (706)
. .++|+=+.|... .+.+.|++- -+++-.|||++|++..
T Consensus 85 ~------~L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 85 H------GLTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred h------CCCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 3 233322212221 255555652 3578899999999975
No 80
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.04 E-value=0.05 Score=63.33 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred cCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 345 RRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~---L--~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
+||.|++.|.+.||++|.... + .++.++++ +| +++-+ | |++.++
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~--~~v~v-D----vt~~~~---------------- 521 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DT--VLLQA-D----VTANNA---------------- 521 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CC--EEEEE-E----CCCCCh----------------
Confidence 489999999999999998631 1 34444442 34 45543 3 444321
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
..+.+.++|++.+.|+++++|++|+.++
T Consensus 522 --------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 --------EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred --------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234567789999999999999999853
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.89 E-value=0.041 Score=53.59 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=67.1
Q ss_pred CceEEEEEccCChhH---HHHHHHHHHHHHHHh--------CCceeEEEeccCCchhhhhhhhhhhccccccCCCCCCcc
Q 005245 505 EQKHICLYGGEDLEW---VRKFTALMGAVARAA--------GIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTL 573 (706)
Q Consensus 505 egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~--------~~~~E~v~Vgkdn~~e~v~~~~~~i~~e~ls~~~~d~t~ 573 (706)
.||.++|||.+ .| |++|++.+.+++++. +.+||+|+|+.|...+.+++.++... + .|..
T Consensus 24 kgk~vlL~FwA--sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~---~--~~~~--- 93 (146)
T cd03008 24 ENRVLLLFFGA--VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP---K--KWLF--- 93 (146)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC---C--Ccee---
Confidence 89999999999 66 599999999987632 23699999999977777766543221 1 1111
Q ss_pred hhhhHHHhhhhhhhhhccCCCCCCChhHHHHHHHhcccCCCCceEEEecCCcccccchhhHH
Q 005245 574 IWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETIL 635 (706)
Q Consensus 574 v~~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LLs~~~~~~GWavlskGs~~~~g~G~~~l 635 (706)
++ |..........+.+- ..|+++.-+| +.|=.+-..|...+.-+|...+
T Consensus 94 ~p-~~~~~~~~l~~~y~v----------~~iPt~vlId--~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 94 LP-FEDEFRRELEAQFSV----------EELPTVVVLK--PDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ec-ccchHHHHHHHHcCC----------CCCCEEEEEC--CCCcEEeeChHHHHHHHHHHHH
Confidence 01 111111112222221 2578888888 4477776666666677775443
No 82
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.88 E-value=0.33 Score=49.68 Aligned_cols=113 Identities=15% Similarity=0.307 Sum_probs=75.8
Q ss_pred ccCCCCceeecceecCcEEEEEEecC---CCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245 331 VECPTKRKVSIDVLRRKSVLLLVSDL---DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE 407 (706)
Q Consensus 331 ~dg~~~~kV~Is~L~gK~VlL~fSal---~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe 407 (706)
+....|+++....|+||.+++||.=- +.||-.+..|.++.++|.+ ..+.++.+|+|++ | |+.|. .+.-+
T Consensus 52 l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-D---PerDt-p~~lk 123 (207)
T COG1999 52 LTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-D---PERDT-PEVLK 123 (207)
T ss_pred eecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-C---CCCCC-HHHHH
Confidence 34567889999999999999999943 4777888899999999974 3678999999986 6 44444 33344
Q ss_pred Hhhc--C-CCceeeccCCCCCHHHHHHHHHhhCC---------------CCCcEEEEECCCCceec
Q 005245 408 ALQY--M-MPWFSVHHPSAIDPAVIRYAKEKWDF---------------RKKPILVVLDPQGRVVN 455 (706)
Q Consensus 408 ~~~~--~-MPWyAVpf~~~id~~~~r~ike~~~~---------------~~iP~LVvL~pqGkv~~ 455 (706)
+|-. - =+|--+--+ .+..+.+...|++ .+-..+.++||+|++..
T Consensus 124 ~Y~~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 124 KYAELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred HHhcccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 4444 1 124444431 2334444443333 33456778899998764
No 83
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=94.52 E-value=0.16 Score=44.47 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=42.6
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 421 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~ 421 (706)
++|+ ++|+|.+.||++|.. +.+.++.+..+ +.++.+.-|-. |++.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~~------------------ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD------DLGINVAKVDV--------TQEP------------------ 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc------cCCeEEEEEEc--------cCCH------------------
Confidence 4566 679999999999875 45555554432 22344443321 1111
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
.+.+.|++++.|+++++ ++|++
T Consensus 62 ---------~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 ---------GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred ---------hHHHHcCCcccCEEEEe-CCCCE
Confidence 14567899999999886 88875
No 84
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.46 E-value=0.16 Score=44.62 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=43.8
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 421 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~ 421 (706)
-++|.|+++|.+.||++|.. +.+.++-++++ +.+ .+.-+ | .++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~--~~~~v-d-------~~~~----------------- 61 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVI--RIGAV-N-------CGDD----------------- 61 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc-------Cce--EEEEE-e-------CCcc-----------------
Confidence 35689999999999999874 44555544442 233 44432 2 1110
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
+.+.+.+++++.|+++++ ++|+.
T Consensus 62 --------~~~~~~~~v~~~Pt~~~~-~~g~~ 84 (101)
T cd03003 62 --------RMLCRSQGVNSYPSLYVF-PSGMN 84 (101)
T ss_pred --------HHHHHHcCCCccCEEEEE-cCCCC
Confidence 134567799999999999 78874
No 85
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.30 E-value=0.089 Score=50.52 Aligned_cols=92 Identities=12% Similarity=0.237 Sum_probs=60.5
Q ss_pred cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 345 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
+||.|+|+|.+.||++|.... =.++-+.++ ++| |.|.+.. +++|.. .+ |
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td~~----------~~----~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTDKN----------LS----P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCCCC----------cC----c
Confidence 489999999999999998731 123333332 346 5554421 223210 00 0
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE 483 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~ 483 (706)
+ + .+.|+++++||+|+++.+ +.--++...|-+.+++.+.|.+-
T Consensus 76 --~--------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~ 118 (130)
T cd02960 76 --D--------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN 118 (130)
T ss_pred --c--------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence 1 1 368999999999998864 35678888899999998888653
No 86
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.30 E-value=0.23 Score=41.89 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=45.7
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+++.++++|.+.||++|.. +.+.++.+.++ .+.++.++=|.. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~~~v~~----------~~------------------- 59 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-----GDGKVVVAKVDC----------TA------------------- 59 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-----cCCceEEEEeec----------cc-------------------
Confidence 4558999999999988876 46777766663 123444443321 11
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCC
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQG 451 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqG 451 (706)
...+.+.+++++.|++++++++|
T Consensus 60 ------~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 ------NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence 12445667999999999999886
No 87
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.29 E-value=0.15 Score=44.17 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=46.6
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
+|.|+++|.+.||++|.- +.+.++.++++ ...+ ++++.+ | .+++ +
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~-----~~~~--~~~~~i-d-------~~~~---------------~--- 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA-----NEDD--VVIAKV-D-------ADEA---------------N--- 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhC-----CCCC--EEEEEE-E-------CCCc---------------c---
Confidence 678999999999998875 56777777764 1223 445544 2 1111 1
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGR 452 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGk 452 (706)
..+.+.|++++.|+++++++.|+
T Consensus 65 ------~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ------KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence 23456679999999999998764
No 88
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.22 E-value=0.16 Score=45.32 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
++.|+++|.+.||++|.. +.+.++++++++. ..+.-.++|..+ |.++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~~~~~~~v--------d~d~-------------------- 66 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEE---FPDAGKVVWGKV--------DCDK-------------------- 66 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhc---cCCCCcEEEEEE--------ECCC--------------------
Confidence 578999999999998875 5788888887632 111113555554 2211
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
-+.+.+.|++++.|+++++ ++|+.
T Consensus 67 -----~~~l~~~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 67 -----ESDIADRYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred -----CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence 1235677899999999998 67874
No 89
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=94.10 E-value=0.15 Score=47.98 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=47.0
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI 424 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i 424 (706)
.+|.|.+.|+|.||+||. .+..+++++.+. ..+. +.|+-+ | .|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk--~m~P~le~la~~---~~~~--v~f~kV-D-------vD~--------------------- 56 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCM--QMDEVLAKIAED---VSNF--AVIYLV-D-------IDE--------------------- 56 (114)
T ss_pred CCCEEEEEEECCCChhHH--HHHHHHHHHHHH---ccCc--eEEEEE-E-------CCC---------------------
Confidence 467899999999999998 455666666532 1122 334432 2 222
Q ss_pred CHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
..-+.+.|+++++|+++++- +|+.+..
T Consensus 57 ----~~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 57 ----VPDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred ----CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 12355778999999999997 6777754
No 90
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.52 E-value=0.45 Score=43.20 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=44.6
Q ss_pred cCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 345 RRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~---L--~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
++|.|++||.+.||++|.... | .++-+.+++ + .|++.+ | .++.+
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-------~--~v~~~~-d----~~~~e----------------- 64 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-------N--FIFWQC-D----IDSSE----------------- 64 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-------C--EEEEEe-c----CCCcc-----------------
Confidence 589999999999998887642 1 233333431 2 222222 1 11111
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCcEEEEECC-CCceec
Q 005245 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVVN 455 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~~iP~LVvL~p-qGkv~~ 455 (706)
+ ..+.+.+++++.|+++++|| +|+++.
T Consensus 65 --------~-~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 65 --------G-QRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred --------H-HHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 1 22455678999999999999 798875
No 91
>PTZ00102 disulphide isomerase; Provisional
Probab=93.49 E-value=0.2 Score=55.68 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=45.9
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.||.|+|+|.+.||++|.. +.|.++-++.+ ..+.+-+++|-. |..+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~-----~~~~v~~~~id~--------~~~~------------------- 421 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYK-----DNDSIIVAKMNG--------TANE------------------- 421 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhc-----cCCcEEEEEEEC--------CCCc-------------------
Confidence 4899999999999999875 44555544443 223455666532 1111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
.+.+.|++++.|+++++++.|++
T Consensus 422 --------~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 --------TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred --------cchhcCCCcccCeEEEEECCCcc
Confidence 12346688999999999987775
No 92
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.46 E-value=0.28 Score=45.92 Aligned_cols=38 Identities=3% Similarity=0.101 Sum_probs=28.3
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
.|+.+.+||++.|||+|.. |.|.++=++ .+.+|.+|-+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---------~~~~~y~vdv 61 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---------TKAPIYYIDS 61 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---------cCCcEEEEEC
Confidence 3788999999999999987 566655433 2366888854
No 93
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.16 E-value=0.4 Score=43.99 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.1
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
++.|.++|++.||++|.. +.++.+++.+. .+..+++.|= .++ +
T Consensus 22 ~~~vvv~f~a~wC~~C~~--~~~~l~~la~~----~~~i~~~~vd----------~d~--~------------------- 64 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEV--TKQLLEELSEL----SDKLKLEIYD----------FDE--D------------------- 64 (113)
T ss_pred CeEEEEEeCCCCCCChHH--HHHHHHHHHHh----cCceEEEEEe----------CCc--C-------------------
Confidence 456889999999999974 33444444321 1235555552 221 0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECCC
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDPQ 450 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~pq 450 (706)
+.+.+.|++++.|++++++..
T Consensus 65 ----~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 ----KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred ----HHHHHHcCCCcCCEEEEEeCC
Confidence 135567899999999999753
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.98 E-value=0.46 Score=41.21 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=46.1
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+++.++++|.+.||++|.- +.+.++.++++. ... ++++-+ |- +.+ .+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~--~~~~~i-d~-----~~~----------------~~-- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGK--GVLAAV-DC-----TKP----------------EH-- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCc--eEEEEE-EC-----CCC----------------cc--
Confidence 4678999999999999886 578888877752 122 444433 21 110 00
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
..+.+.+++++.|+++++. +|+++
T Consensus 65 -------~~~~~~~~i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 65 -------DALKEEYNVKGFPTFKYFE-NGKFV 88 (104)
T ss_pred -------HHHHHhCCCccccEEEEEe-CCCee
Confidence 1245667999999987764 77754
No 95
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.93 E-value=0.49 Score=41.10 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=42.4
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
++.|+|+|.+.||++|.- +.+.++.++.+ +.+.+.-+ | .++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~i---d-------~~~-------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAV---D-------ADV-------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEE---E-------Ccc--------------------
Confidence 566999999999988775 45666666553 23444444 2 111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCC
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQ 450 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pq 450 (706)
...+.+.|++++.|+++++++.
T Consensus 61 -----~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 -----HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred -----hHHHHHHCCCCccCEEEEECCC
Confidence 1234567899999999999755
No 96
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.87 E-value=3.9 Score=41.53 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=45.2
Q ss_pred CcEEEEEEe--cCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVS--DLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fS--al~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
|+.|.+|++ +.||++|.. +..+++++.+. -++.+|.++-+ |.++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~--~~p~l~~la~~----~~~~~i~~v~v--------d~~~-------------------- 65 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKE--TEQLLEELSEV----SPKLKLEIYDF--------DTPE-------------------- 65 (215)
T ss_pred CeEEEEEcCCCCCCCCchHH--HHHHHHHHHhh----CCCceEEEEec--------CCcc--------------------
Confidence 566666666 589999985 66677777532 23577888865 2221
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
-+.+.+.|++++.|++++++. |+.
T Consensus 66 -----~~~l~~~~~V~~~Pt~~~f~~-g~~ 89 (215)
T TIGR02187 66 -----DKEEAEKYGVERVPTTIILEE-GKD 89 (215)
T ss_pred -----cHHHHHHcCCCccCEEEEEeC-Cee
Confidence 123556779999999999974 544
No 97
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.80 E-value=0.52 Score=41.48 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=43.5
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI 424 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i 424 (706)
.+|.|+++|.+.||++|.. +...|+++.+. ..+...+.-| | .++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~--~~p~~~~~~~~---~~~~~~~~~v---d-------~~~--------------------- 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQA--LLPELRKAARA---LKGKVKVGSV---D-------CQK--------------------- 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHH--HHHHHHHHHHH---hcCCcEEEEE---E-------CCc---------------------
Confidence 3679999999999999875 34455555421 1223333333 2 110
Q ss_pred CHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 425 DPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
.+.+.+.+++++.|+++++.+.|+.
T Consensus 62 ----~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 ----YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred ----hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1235567899999999999876443
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.76 E-value=0.18 Score=47.22 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=36.6
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 502 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 502 ~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.++.|+++.+|||+.+ .|||.|.+.+.+++++ ....++||..|.
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~ 63 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN 63 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence 4678999999999965 7779999999999876 457789998874
No 99
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.19 E-value=0.56 Score=38.51 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=42.2
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245 347 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 426 (706)
Q Consensus 347 K~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~ 426 (706)
+.++|+|.+.||+.|.. +.+.++++.. ...++.++.|.. +.
T Consensus 11 ~~~ll~~~~~~C~~C~~--~~~~~~~~~~----~~~~~~~~~i~~--------~~------------------------- 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKA--IAPVLEELAE----EYPKVKFVKVDV--------DE------------------------- 51 (93)
T ss_pred CcEEEEEECCCChhHHH--hhHHHHHHHH----HCCCceEEEEEC--------CC-------------------------
Confidence 88999999999999864 3444555442 134566776643 11
Q ss_pred HHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245 427 AVIRYAKEKWDFRKKPILVVLDPQGR 452 (706)
Q Consensus 427 ~~~r~ike~~~~~~iP~LVvL~pqGk 452 (706)
.+.+.+.|++.+.|+++++. +|+
T Consensus 52 --~~~~~~~~~v~~~P~~~~~~-~g~ 74 (93)
T cd02947 52 --NPELAEEYGVRSIPTFLFFK-NGK 74 (93)
T ss_pred --ChhHHHhcCcccccEEEEEE-CCE
Confidence 11234567999999999995 555
No 100
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=92.02 E-value=1.2 Score=40.45 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=55.1
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
++.|.++|.+.||++|.. +..+++++.+. -.+ +.|+-+ | .++
T Consensus 24 ~~~vvv~F~a~~c~~C~~--l~~~l~~la~~----~~~--v~f~~v-d-------~~~---------------------- 65 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKI--LDSHLEELAAK----YPE--TKFVKI-N-------AEK---------------------- 65 (113)
T ss_pred CCEEEEEEeCCCCCcHHH--HHHHHHHHHHH----CCC--cEEEEE-E-------chh----------------------
Confidence 589999999999999984 55555665422 112 344433 2 111
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHH
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEA 479 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~ee 479 (706)
. .|.+.|++++.|+++++- +|+.+.. -.+.....| ..|+...++.
T Consensus 66 -~---~l~~~~~i~~~Pt~~~f~-~G~~v~~-~~G~~~~~~---~~~~~~~l~~ 110 (113)
T cd02957 66 -A---FLVNYLDIKVLPTLLVYK-NGELIDN-IVGFEELGG---DDFTTEDLEK 110 (113)
T ss_pred -h---HHHHhcCCCcCCEEEEEE-CCEEEEE-EecHHHhCC---CCCCHHHHHH
Confidence 1 456778999999998885 5777632 223344555 6777666654
No 101
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.52 E-value=1.2 Score=40.86 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
+|.|+++|.+.||++|.. +.+.++.++++.. .+.+.+ ..||- +.+ .
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~v~~---~~vd~-----~~~--~------------------ 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPVVRV---AAVDC-----ADE--E------------------ 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCceEE---EEEec-----cch--h------------------
Confidence 479999999999999876 5677777777531 112222 33331 111 1
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHH
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNAL 459 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~ 459 (706)
...+.+.|++++.|+++++.+.+ ....+|.
T Consensus 67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence 12345677999999999996544 5555443
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.23 E-value=0.55 Score=40.33 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=44.7
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
.+|.|+++|.+.||++|.. +.|.++-++.. +++.++-|-+ ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~----------~~------------------- 59 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYK-------DNVKFAKVDC----------DE------------------- 59 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTT-------TTSEEEEEET----------TT-------------------
T ss_pred cCCCEEEEEeCCCCCccccccceecccccccc-------cccccchhhh----------hc-------------------
Confidence 3699999999999999887 34555544442 2444444421 11
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
-+.+.+.|++++.|+++++...+.+
T Consensus 60 ------~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 60 ------NKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp ------SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred ------cchhhhccCCCCCCEEEEEECCcEE
Confidence 1335677899999999999755444
No 103
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=90.61 E-value=0.81 Score=47.63 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=44.9
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
++.++++|.+.||++|.. +.+.++.++++ +. |.+.-+ | .++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~--v~~~~V-D-------~~~~------------------- 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQ--VNVADL-D-------ATRA------------------- 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CC--eEEEEe-c-------Cccc-------------------
Confidence 478999999999999874 55666666553 22 333322 3 1110
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
..+.++|++++.|++++++ +|+++
T Consensus 96 ------~~l~~~~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 96 ------LNLAKRFAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred ------HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence 1356788999999999998 78765
No 104
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=90.29 E-value=0.69 Score=42.54 Aligned_cols=66 Identities=14% Similarity=0.301 Sum_probs=43.3
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
++.|.++|.+.||++|.. +.|.++-++. .+ +.|+-| | .++
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--------~~--i~f~~V-d-------~~~-------------------- 63 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH--------LE--TKFIKV-N-------AEK-------------------- 63 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHc--------CC--CEEEEE-E-------ccc--------------------
Confidence 578999999999999985 3444443322 12 344433 2 111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
...+.+.|+++++|+++++. +|+++.
T Consensus 64 -----~~~l~~~~~v~~vPt~l~fk-~G~~v~ 89 (113)
T cd02989 64 -----APFLVEKLNIKVLPTVILFK-NGKTVD 89 (113)
T ss_pred -----CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence 12356788999999999987 777663
No 105
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.11 E-value=2.9 Score=40.56 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=62.5
Q ss_pred CCceeecce-ecCcEEEEEEecC-C--CChhH-HHHHHHHHHHHhhcccCCCCCe-EEEEEecccCCCCcChhhHHHHHH
Q 005245 335 TKRKVSIDV-LRRKSVLLLVSDL-D--VSNEE-LFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKFEA 408 (706)
Q Consensus 335 ~~~kV~Is~-L~gK~VlL~fSal-~--~~~~e-~~~L~~iY~elk~~~~~~~~~f-EIVwIpiVd~s~~w~D~de~~Fe~ 408 (706)
+|..|.+++ ++||.|.|||=-. | .|.-| +..|.+.|+++++ .+. +|+=||. | +-...++|.+
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~ 84 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK 84 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence 477899999 6887666666554 4 44556 7789999999973 346 5888875 3 2445666765
Q ss_pred hhcCCCceeeccCCCCCHHHHHHHHHhhCCC------C-----CcEEEEECCCCceecc
Q 005245 409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------K-----KPILVVLDPQGRVVNQ 456 (706)
Q Consensus 409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~-----iP~LVvL~pqGkv~~~ 456 (706)
-..-. ++|+=+.|. -+.+.+.|++. + ....+|+| +|++...
T Consensus 85 ~~~~~----~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 85 ALGAK----DKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred hhCCC----CcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 44431 122211122 13344444541 1 46678889 6998754
No 106
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=89.75 E-value=1.9 Score=37.52 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=41.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
|+.++++|.+.||++|+ .+.++++++.+. -.+++.++||- .++ |.
T Consensus 12 ~~~~~~~f~~~~~~~~~--~~~~~~~~vA~~---~~~~v~f~~vd----------~~~--~~------------------ 56 (103)
T cd02982 12 GKPLLVLFYNKDDSESE--ELRERFKEVAKK---FKGKLLFVVVD----------ADD--FG------------------ 56 (103)
T ss_pred CCCEEEEEEcCChhhHH--HHHHHHHHHHHH---hCCeEEEEEEc----------hHh--hH------------------
Confidence 88999999999987654 344444444321 12457888873 232 11
Q ss_pred HHHHHHHHHhhCCC--CCcEEEEECC
Q 005245 426 PAVIRYAKEKWDFR--KKPILVVLDP 449 (706)
Q Consensus 426 ~~~~r~ike~~~~~--~iP~LVvL~p 449 (706)
.+.+.|+++ +.|++++++.
T Consensus 57 -----~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 57 -----RHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred -----HHHHHcCCChhhCCEEEEEec
Confidence 134556888 9999999987
No 107
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=89.72 E-value=1.7 Score=36.26 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=23.6
Q ss_pred EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEe
Q 005245 350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLP 390 (706)
Q Consensus 350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIp 390 (706)
..+|++.||++|.. +.|.++.++.+ .+++++.|-
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd 38 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYIN 38 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEe
Confidence 45678899999885 56777766653 347777774
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=89.52 E-value=0.99 Score=44.27 Aligned_cols=39 Identities=5% Similarity=-0.077 Sum_probs=25.7
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEE
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWL 389 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwI 389 (706)
+++.|+++|.+.||++|.. +.|.++.++.. +.++.++-|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~------~~~v~f~~V 86 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYN------NNNLKFGKI 86 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc------cCCeEEEEE
Confidence 3679999999999999884 34544444432 234555555
No 109
>PTZ00062 glutaredoxin; Provisional
Probab=89.46 E-value=0.7 Score=47.48 Aligned_cols=127 Identities=12% Similarity=0.174 Sum_probs=75.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245 347 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 426 (706)
Q Consensus 347 K~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~ 426 (706)
+.+.|||++.||++|. .+..+.++|.+.. -+|.|+.+ |++
T Consensus 18 g~~vl~f~a~w~~~C~--~m~~vl~~l~~~~------~~~~F~~V--------~~d------------------------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYE--QLMDVCNALVEDF------PSLEFYVV--------NLA------------------------ 57 (204)
T ss_pred CcEEEEEeCCCCcchH--HHHHHHHHHHHHC------CCcEEEEE--------ccc------------------------
Confidence 4579999999999998 5677777776421 24777765 322
Q ss_pred HHHHHHHHhhCCCCCcEEEEECCCCcee----cccHHHHH---HHhCcccccCChhhHHHhhhhcccccccccccCCCCc
Q 005245 427 AVIRYAKEKWDFRKKPILVVLDPQGRVV----NQNALHMM---WIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVI 499 (706)
Q Consensus 427 ~~~r~ike~~~~~~iP~LVvL~pqGkv~----~~nA~~mI---~~wG~~AFPFT~~r~eeL~~~e~w~lelLvd~id~~I 499 (706)
|++.++|++|++. +|+.+ ..|+..+. ..|-.. .. .++ +.-.+
T Consensus 58 ---------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~~~---------------~~~~v 106 (204)
T PTZ00062 58 ---------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-SED---------------TVEKI 106 (204)
T ss_pred ---------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-HHH---------------HHHHH
Confidence 6999999999995 55554 44554432 122110 00 000 11122
Q ss_pred cccccCceEEEEE--ccCChhHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245 500 PTWIMEQKHICLY--GGEDLEWVRKFTALMGAVARAAGIALEMLYVGKS 546 (706)
Q Consensus 500 ~~~i~egK~I~LY--gg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkd 546 (706)
.++|+. +-|.|| |.....|| .|..++..+-+..+++++.+-|.+|
T Consensus 107 ~~li~~-~~Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 107 ERLIRN-HKILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred HHHHhc-CCEEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 333333 334444 43344577 5566666665666999998888765
No 110
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=89.02 E-value=0.75 Score=42.68 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=37.7
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhC---CceeEEEeccCCchhhhhhhh
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAG---IALEMLYVGKSNPKEKARRII 556 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~---~~~E~v~Vgkdn~~e~v~~~~ 556 (706)
.||.+.|||.+ .|| ++..+.+.+++++.+ ..+++++|+-|...+.+++.+
T Consensus 16 ~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~ 71 (132)
T cd02964 16 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYF 71 (132)
T ss_pred CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 89999999998 675 777788888766432 379999999886555554433
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=88.52 E-value=2 Score=42.76 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
++.|.++|++.||++|.. |.+++++|... - -+|.|+-| |.++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~--m~~~l~~LA~~----~--~~vkF~kV--------d~d~---------------------- 124 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAA--LNSSLLCLAAE----Y--PAVKFCKI--------RASA---------------------- 124 (175)
T ss_pred CcEEEEEEECCCCchHHH--HHHHHHHHHHH----C--CCeEEEEE--------eccc----------------------
Confidence 459999999999999984 45555666432 1 14777765 2221
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHh
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEAL 480 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL 480 (706)
. .+.+.|+++.+|+++++- +|+.+.. -+.. ...|.. -|+.+++|..
T Consensus 125 -~---~l~~~f~v~~vPTlllyk-~G~~v~~-~vG~-~~~~g~--~f~~~~le~~ 170 (175)
T cd02987 125 -T---GASDEFDTDALPALLVYK-GGELIGN-FVRV-TEDLGE--DFDAEDLESF 170 (175)
T ss_pred -h---hhHHhCCCCCCCEEEEEE-CCEEEEE-Eech-HHhcCC--CCCHHHHHHH
Confidence 0 345667999999999886 5877742 1221 234444 6777777654
No 112
>smart00594 UAS UAS domain.
Probab=88.30 E-value=2 Score=39.84 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=43.4
Q ss_pred ecCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245 344 LRRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 418 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV 418 (706)
=+||.+++||.+.||++|.... =.++-+-++ .+ .|.+.. | +++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~--fv~~~~-d----v~~~----------------- 73 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------EN--FIFWQV-D----VDTS----------------- 73 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cC--EEEEEe-c----CCCh-----------------
Confidence 4689999999999998877642 122333332 12 344332 2 1211
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCC
Q 005245 419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQG 451 (706)
Q Consensus 419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqG 451 (706)
++ ..+.+.+++.+-|.++++||+|
T Consensus 74 --------eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 74 --------EG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred --------hH-HHHHHhcCcCCCCEEEEEecCC
Confidence 12 3466678999999999999997
No 113
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=88.20 E-value=2 Score=38.14 Aligned_cols=72 Identities=14% Similarity=0.037 Sum_probs=46.6
Q ss_pred cceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245 341 IDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 420 (706)
Q Consensus 341 Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf 420 (706)
++.|++..-..+|.+.||+.|. .+.++.+++.+. ..++++..+-+ |+..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~--~~~~~~~~l~~~----~~~i~~~~vd~--------~~~~----------------- 55 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCP--DVVQALNLMAVL----NPNIEHEMIDG--------ALFQ----------------- 55 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcH--HHHHHHHHHHHH----CCCceEEEEEh--------HhCH-----------------
Confidence 3478899888999999999987 455666777643 12344444421 2111
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
.+.+++++.++|++|+ +|+++..
T Consensus 56 ----------e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 ----------DEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred ----------HHHHHcCCccCCEEEE---CCEEEEe
Confidence 1234679999999986 6877763
No 114
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=2.3 Score=43.65 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=71.2
Q ss_pred ceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCC
Q 005245 337 RKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM 413 (706)
Q Consensus 337 ~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~M 413 (706)
.+|..++..||.+.|||=-.| .||-|+..+...|++.++ .+-||+-||+ |+ .....+..+--..-
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-Ds-----~fsH~aW~~~~~~~ 91 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-DS-----VFSHKAWKATIREA 91 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-Cc-----HHHHHHHHhcHHhc
Confidence 489999999999999999888 788899999999999984 4599999986 42 22233333321111
Q ss_pred Ccee-eccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCcee
Q 005245 414 PWFS-VHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVV 454 (706)
Q Consensus 414 PWyA-Vpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~ 454 (706)
.=+. |+||-. ....+.|.+.|++-. .=.+.|+||+|++-
T Consensus 92 ~gi~~i~~Pmi--aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir 137 (194)
T COG0450 92 GGIGKIKFPMI--ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR 137 (194)
T ss_pred CCccceecceE--EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence 1111 556532 234566777778754 23578999999874
No 115
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=87.40 E-value=0.81 Score=43.22 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=51.1
Q ss_pred CccccCCCCcee-ecce-----ec-CcEEEEEEecCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCc
Q 005245 328 LPLVECPTKRKV-SIDV-----LR-RKSVLLLVSDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW 398 (706)
Q Consensus 328 ~pl~dg~~~~kV-~Is~-----L~-gK~VlL~fSal~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w 398 (706)
.|-|||.....+ .=+. .+ .+.|+++|-+.||+| |....+..+..++.+.- -..++ |.++-+ |
T Consensus 2 ~~~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~-l~~~~--v~~~kV-D----- 72 (120)
T cd03065 2 FPEYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV-LEDKG--IGFGLV-D----- 72 (120)
T ss_pred CcccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH-hhcCC--CEEEEE-e-----
Confidence 477888764331 1121 22 347888888888877 77433333333332110 00223 555543 2
Q ss_pred ChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 399 TEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 399 ~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
.++ -.-|.++|+++++|+|+++- +|+.+.
T Consensus 73 --~d~-------------------------~~~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 73 --SKK-------------------------DAKVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred --CCC-------------------------CHHHHHHcCCccccEEEEEE-CCEEEE
Confidence 222 13455678999999999995 888664
No 116
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=2.2 Score=39.54 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
+|.|.+.|+|.||+||.. +...|++|.. .-.+ ++|+=+ |-|+
T Consensus 21 ~kliVvdF~a~wCgPCk~--i~P~~~~La~----~y~~--v~Flkv--------dvde---------------------- 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKA--IAPKFEKLAE----KYPD--VVFLKV--------DVDE---------------------- 62 (106)
T ss_pred CCeEEEEEECCCCcchhh--hhhHHHHHHH----HCCC--CEEEEE--------eccc----------------------
Confidence 799999999999999985 5667778763 2233 666643 2222
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECC---CCceecccHH
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDP---QGRVVNQNAL 459 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~p---qGkv~~~nA~ 459 (706)
..-+.+.|+++..|+++.+-. .++++..|..
T Consensus 63 ---~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 63 ---LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred ---CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 334556789999999999932 2455555544
No 117
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=86.36 E-value=1.3 Score=40.80 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=40.6
Q ss_pred CCccccccCceEEEEEccCChhH---HHHHHHHHHHHHHHh---CCceeEEEeccCCchhhhhhh
Q 005245 497 PVIPTWIMEQKHICLYGGEDLEW---VRKFTALMGAVARAA---GIALEMLYVGKSNPKEKARRI 555 (706)
Q Consensus 497 ~~I~~~i~egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~---~~~~E~v~Vgkdn~~e~v~~~ 555 (706)
..+++. .||++.|||.+ .| |++..+.+.+++++. +..+++++|+-|...+.+++-
T Consensus 11 v~l~~~--~gk~vll~Fwa--~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~ 71 (131)
T cd03009 11 VPVSSL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDY 71 (131)
T ss_pred ccHHHh--CCcEEEEEEEC--CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHH
Confidence 344444 79999999998 56 488888888776642 347999999999776665543
No 118
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=86.22 E-value=3.4 Score=35.71 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHh
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESR 374 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk 374 (706)
||.|+|+|.+.||++|.. +.+.++.++++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 48 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLK 48 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhc
Confidence 589999999999998875 56777776664
No 119
>PTZ00102 disulphide isomerase; Provisional
Probab=85.32 E-value=1.9 Score=48.07 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=50.1
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
+++.++++|-+.||++|.. +.+.++.++++. ....|++..+ |. ++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~------~~~~i~~~~v-d~-------~~------------------- 94 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE------KKSEIVLASV-DA-------TE------------------- 94 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh------cCCcEEEEEE-EC-------CC-------------------
Confidence 4789999999999999875 457777777652 2346777765 31 11
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv 453 (706)
-+.+.++|++++.|+++++...+.+
T Consensus 95 ------~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 ------EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ------CHHHHHhcCCCcccEEEEEECCceE
Confidence 1236677899999999999876554
No 120
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=85.28 E-value=2.2 Score=40.07 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=43.0
Q ss_pred CcEEEEEEecCC--CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245 346 RKSVLLLVSDLD--VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423 (706)
Q Consensus 346 gK~VlL~fSal~--~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~ 423 (706)
|..+.|+|++.| ||+|.- +..+.+++.+. -++...++-|=+ |++
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~--i~P~leela~e---~~~~v~f~kVdi--------d~~--------------------- 72 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLD--VAVVLPELLKA---FPGRFRAAVVGR--------ADE--------------------- 72 (111)
T ss_pred CCCEEEEecCCcccCcchhh--hHhHHHHHHHH---CCCcEEEEEEEC--------CCC---------------------
Confidence 467788899997 888775 33344444321 123344444421 111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
..|.++|+++++|+|+++- +|+.+..
T Consensus 73 ------~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ------QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 1456778999999999986 6776643
No 121
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=84.28 E-value=2.7 Score=39.10 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=22.1
Q ss_pred ecCcEEEEEEecCCCChhHH--HHHHHHHHHH
Q 005245 344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRES 373 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~el 373 (706)
-.+|.|++.|.|.||++|.. +.+.++-+++
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~ 58 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL 58 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999999875 3444444444
No 122
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=84.03 E-value=6.1 Score=28.87 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHH
Q 005245 350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA 427 (706)
Q Consensus 350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~ 427 (706)
+++|.+.||+.|.. ..+.++ . ....++.++++++-+ +.+...+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-------~~~~~~~~~~~~~~~------~~~~~~~--------------------- 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-------LLNKGVKFEAVDVDE------DPALEKE--------------------- 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-------hhCCCcEEEEEEcCC------ChHHhhH---------------------
Confidence 36788888877766 345555 1 134579999998622 1111111
Q ss_pred HHHHHHHhhCCCCCcEEEEECCC
Q 005245 428 VIRYAKEKWDFRKKPILVVLDPQ 450 (706)
Q Consensus 428 ~~r~ike~~~~~~iP~LVvL~pq 450 (706)
...+++...|.+++.+++
T Consensus 46 -----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 -----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred -----HHhCCCccccEEEEEeCC
Confidence 455788899999999887
No 123
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=83.71 E-value=5.8 Score=33.89 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred hCCCCCcEEEEECCCCcee
Q 005245 436 WDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 436 ~~~~~iP~LVvL~pqGkv~ 454 (706)
+++.++|++++ +|+++
T Consensus 45 ~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 45 AGVTATPGVAV---DGELV 60 (76)
T ss_pred cCCCcCCEEEE---CCEEE
Confidence 69999999999 88777
No 124
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=83.48 E-value=3 Score=45.80 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
++|.++++|.|.||++|.. +.+.++.+.++. .+. .|.|+-+ | .++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~--~v~~~~v-d-------~~~------------------- 63 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGP--PIKLAKV-D-------ATE------------------- 63 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCC--ceEEEEE-E-------CCC-------------------
Confidence 4678999999999998876 578888887763 222 3555544 2 221
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR 452 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk 452 (706)
-+.+.+++++++.|+++++. +|+
T Consensus 64 ------~~~l~~~~~i~~~Pt~~~~~-~g~ 86 (462)
T TIGR01130 64 ------EKDLAQKYGVSGYPTLKIFR-NGE 86 (462)
T ss_pred ------cHHHHHhCCCccccEEEEEe-CCc
Confidence 12356778999999999996 444
No 125
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=83.43 E-value=7.1 Score=36.51 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCCceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEecc
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIV 392 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiV 392 (706)
.+|+.|+++.++||.+++.=-|.-|.-- ....|.++|++.+. ..|+|+-.|.-
T Consensus 9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn 62 (108)
T PF00255_consen 9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN 62 (108)
T ss_dssp TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred CCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence 3678999999999999999989887543 33479999999973 35999999984
No 126
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=82.80 E-value=3.4 Score=39.38 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=39.5
Q ss_pred eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245 343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 420 (706)
Q Consensus 343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf 420 (706)
.+.++.-.|.|...||+.|.. |.|..+=+.. .+.++=+|+- |+..+-.+.+.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--------p~i~~~~i~r--------d~~~el~~~~l---------- 91 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEAN--------PNIEVRIILR--------DENKELMDQYL---------- 91 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH---------TTEEEEEE-H--------HHHHHHTTTTT----------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC--------CCCeEEEEEe--------cCChhHHHHHH----------
Confidence 455677899999999988665 6787776653 1466666643 54443332211
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
. .+.+.||++|++|.+|+++.
T Consensus 92 ------------t--~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 92 ------------T--NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp ------------T---SS--SSEEEEE-TT--EEE
T ss_pred ------------h--CCCeecCEEEEEcCCCCEeE
Confidence 1 36778999999999999873
No 127
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=82.26 E-value=3.6 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=30.6
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEe
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLP 390 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIp 390 (706)
.+|.|+++|.+.||++|.. +.+.++.+.++. ...++.++.|-
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~i~~~~id 406 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD----AESDVVIAKMD 406 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc----CCCcEEEEEEE
Confidence 4899999999999999875 567777666651 12357777763
No 128
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=80.90 E-value=9.8 Score=40.06 Aligned_cols=102 Identities=11% Similarity=0.225 Sum_probs=55.1
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEe--cccCCC------CcChhhH-HHHHHhhcCCCc
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLP--IVDRST------PWTEAKE-HKFEALQYMMPW 415 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIp--iVd~s~------~w~D~de-~~Fe~~~~~MPW 415 (706)
.+|++...||+.+||-|.-. +.++++.. ..++.+|.|+| +..+.. -|...|+ +.++.+.....-
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl-----~~~l~~~~--~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQF-----WQQARPWV--DSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCCeEEEEEECCCChhHHHH-----HHHHHHHh--hcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 47888999999999998653 22332111 12346666666 332211 1333333 334444433322
Q ss_pred eeeccCCCCCHHHHHH------HHHhhCCCCCcEEEEECCCCce
Q 005245 416 FSVHHPSAIDPAVIRY------AKEKWDFRKKPILVVLDPQGRV 453 (706)
Q Consensus 416 yAVpf~~~id~~~~r~------ike~~~~~~iP~LVvL~pqGkv 453 (706)
-.+......+.+..+. +-+.++++|-|++|+.|.+|++
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1111111112223333 4478999999999999999984
No 129
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=80.58 E-value=2.3 Score=43.28 Aligned_cols=127 Identities=18% Similarity=0.289 Sum_probs=85.5
Q ss_pred CccccCCCCceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH
Q 005245 328 LPLVECPTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH 404 (706)
Q Consensus 328 ~pl~dg~~~~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~ 404 (706)
.-+.|| .-+.++++.++||+|+|+|=.++ .||.|+.....-|.+.+. -+-||+.+|. ||
T Consensus 16 ~aVVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~-DS---------- 77 (196)
T KOG0852|consen 16 TAVVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST-DS---------- 77 (196)
T ss_pred eEEEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec-cc----------
Confidence 346677 44589999999999999998888 779999999999999973 4689999985 32
Q ss_pred HHHHhhcCCCceeeccCCC--------CCHHHHHHHHHhhCC----CCCc--EEEEECCCCceec------------ccH
Q 005245 405 KFEALQYMMPWFSVHHPSA--------IDPAVIRYAKEKWDF----RKKP--ILVVLDPQGRVVN------------QNA 458 (706)
Q Consensus 405 ~Fe~~~~~MPWyAVpf~~~--------id~~~~r~ike~~~~----~~iP--~LVvL~pqGkv~~------------~nA 458 (706)
.|+-.-|-+.|-... +=....+.|.+.+++ .|++ -|.++|++|.+-. ..+
T Consensus 78 ----~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~ 153 (196)
T KOG0852|consen 78 ----VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDET 153 (196)
T ss_pred ----hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHH
Confidence 223344555543110 001245667777776 4554 4888898886532 234
Q ss_pred HHHHHHhCcccccCChhhHHHhh
Q 005245 459 LHMMWIWGSVAFPFSVAREEALW 481 (706)
Q Consensus 459 ~~mI~~wG~~AFPFT~~r~eeL~ 481 (706)
+.+| +||-||.+..|-.-
T Consensus 154 lRLv-----qAfQ~td~~geVcP 171 (196)
T KOG0852|consen 154 LRLV-----QAFQFTDEHGEVCP 171 (196)
T ss_pred HHHH-----HHHhhhhccCcccc
Confidence 4444 67888776665443
No 130
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=79.79 E-value=5.7 Score=45.73 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=43.9
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
++|.|++.|.+.||++|.. +.+.++.++++ +.+..++.|=+ |.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~------~~~v~~~kVdv--------D~~~------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLA------GSGVKVAKFRA--------DGDQ------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCcEEEEEEC--------CCCc-------------------
Confidence 6889999999999999985 45555555553 22345555522 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCC
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQ 450 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pq 450 (706)
.....+.|++++.|+++++...
T Consensus 417 ------~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 417 ------KEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred ------cHHHHHHcCCCccceEEEEECC
Confidence 1123456799999999999654
No 131
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=78.52 E-value=8.5 Score=31.24 Aligned_cols=33 Identities=3% Similarity=-0.171 Sum_probs=20.1
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEE
Q 005245 351 LLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWL 389 (706)
Q Consensus 351 L~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwI 389 (706)
.+|++.||++|.. +.++.+++.+ ...++++..|
T Consensus 4 ~~f~~~~C~~C~~--~~~~l~~l~~----~~~~i~~~~i 36 (67)
T cd02973 4 EVFVSPTCPYCPD--AVQAANRIAA----LNPNISAEMI 36 (67)
T ss_pred EEEECCCCCCcHH--HHHHHHHHHH----hCCceEEEEE
Confidence 5788899999954 4455566643 1234555555
No 132
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=77.99 E-value=5.3 Score=37.92 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=33.7
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccCC
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l---~~I~~~~~~~~E~v~Vgkdn 547 (706)
.++||.|+|+||+|+ .||+.+.... .+|++..+..|..|.|..+.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~ 60 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE 60 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc
Confidence 459999999999975 7778776532 46666656689888887653
No 133
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=77.94 E-value=6.2 Score=34.82 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=31.4
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l---~~I~~~~~~~~E~v~Vgkd 546 (706)
+++||.|.|||++++ .||+.|.+.+ .++++..+..+.++.|.-+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 55 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT 55 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC
Confidence 568999999999954 5568887665 4666554447777777654
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=77.13 E-value=9.1 Score=38.86 Aligned_cols=30 Identities=7% Similarity=-0.121 Sum_probs=21.3
Q ss_pred ecCcEEEEEEecCCCChhHHHHHHHHHHHHhh
Q 005245 344 LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQ 375 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~ 375 (706)
+++..+.+.|++.||++|.. +..+.+++..
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~--~~~~l~~l~~ 160 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPY--AVLMAHKFAL 160 (215)
T ss_pred cCCCcEEEEEECCCCCCcHH--HHHHHHHHHH
Confidence 45556777799999999984 4456666653
No 135
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=75.22 E-value=9.7 Score=36.13 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.2
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhh
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQ 375 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~ 375 (706)
.+|.|.|-|++.||+||.. +.++++++.+
T Consensus 13 ~~klVVVdF~a~WC~pCk~--mdp~l~ela~ 41 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQ--LDDILSKTSH 41 (114)
T ss_pred CCCEEEEEEeCCCChhHHH--HHHHHHHHHH
Confidence 6899999999999999964 5566666653
No 136
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=74.99 E-value=1.7 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=21.2
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCcccceee
Q 005245 669 HCNR-LILPGEAGRIPEKVVCAECGRRMEEFI 699 (706)
Q Consensus 669 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~i 699 (706)
.|.+ +++....+. .+.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 4666 655543444 88999999999887754
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=74.25 E-value=10 Score=38.55 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 425 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id 425 (706)
++.|.+.|++.||++|.. |.+++++|.... .++.|+-| +.++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~--m~~~l~~LA~k~------~~vkFvkI--------~ad~~--------------------- 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRL--LNQHLSELARKF------PDTKFVKI--------ISTQC--------------------- 144 (192)
T ss_pred CCEEEEEEECCCCchHHH--HHHHHHHHHHHC------CCCEEEEE--------EhHHh---------------------
Confidence 468999999999999985 566667765321 13666655 22210
Q ss_pred HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHh
Q 005245 426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEAL 480 (706)
Q Consensus 426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL 480 (706)
.+.|++++.|++++.- +|+++..= ++. ...|-. =||...+|.+
T Consensus 145 -------~~~~~i~~lPTlliyk-~G~~v~~i-vG~-~~~gg~--~~~~~~lE~~ 187 (192)
T cd02988 145 -------IPNYPDKNLPTILVYR-NGDIVKQF-IGL-LEFGGM--NTTMEDLEWL 187 (192)
T ss_pred -------HhhCCCCCCCEEEEEE-CCEEEEEE-eCc-hhhCCC--CCCHHHHHHH
Confidence 1457889999999984 67666322 222 224555 6777777654
No 138
>PLN02309 5'-adenylylsulfate reductase
Probab=71.73 E-value=13 Score=42.78 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.0
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHH
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRES 373 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~el 373 (706)
++|.|+++|.+.||++|.. +.+.++.+++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~ 394 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKL 394 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 6899999999999999985 3444444444
No 139
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=71.05 E-value=19 Score=30.73 Aligned_cols=20 Identities=15% Similarity=-0.050 Sum_probs=18.3
Q ss_pred cCcEEEEEEecCCCChhHHH
Q 005245 345 RRKSVLLLVSDLDVSNEELF 364 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~ 364 (706)
+||.|+++|++.||+.|...
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l 35 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKL 35 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHH
T ss_pred cCCCEEEEEECCCCHhHHHH
Confidence 58999999999999999874
No 140
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=70.54 E-value=8.6 Score=36.81 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=36.2
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
+..||.+.|||.+.+ .+|+.+.+.+.++++..+..+.++.|.-|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 568999999999953 556999999999988766667888887664
No 141
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=70.39 E-value=8 Score=41.59 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=46.0
Q ss_pred ccCCCCceeecceecCcEEEEEEecC---CCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 331 VECPTKRKVSIDVLRRKSVLLLVSDL---DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 331 ~dg~~~~kV~Is~L~gK~VlL~fSal---~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
....+|+.|.-.+|+||=+++||.=. |+||||+-+|.++-+++... .+-..==|||++
T Consensus 124 L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~---~~~~~~PlFIsv 184 (280)
T KOG2792|consen 124 LVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK---PGLPPVPLFISV 184 (280)
T ss_pred EEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc---CCCCccceEEEe
Confidence 34457889999999999999999864 58899999999999999753 332222799986
No 142
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=69.48 E-value=9.4 Score=34.75 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=37.8
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhh
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSNPKEKARRII 556 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~~~ 556 (706)
.||.+.|||-+ .|| ++..+.+.++++.. .+.++.|+.+...+.+++.+
T Consensus 24 ~gk~vvv~F~a--~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 24 KGKPYLLNVWA--SWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHH
Confidence 69999999987 665 77788888887653 49999999877777777654
No 143
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=68.89 E-value=16 Score=32.02 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=35.0
Q ss_pred cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 504 MEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
+.+|.+.+||.+.+ .+|+.+.+.+.+++++.+..+.++.|.-|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~ 56 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED 56 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC
Confidence 47899999998853 6679999999999877665677777776643
No 144
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=67.84 E-value=7.7 Score=36.94 Aligned_cols=79 Identities=14% Similarity=0.355 Sum_probs=41.8
Q ss_pred cCcEEEEEEec-------CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245 345 RRKSVLLLVSD-------LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW 415 (706)
Q Consensus 345 ~gK~VlL~fSa-------l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW 415 (706)
.|+.+.|||.+ .|||.|.. +.+.+.+.++. ++.-+|.+.+ .....|.|.+ ..|..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~V-G~r~~Wkdp~-n~fR~------- 81 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEV-GDRPEWKDPN-NPFRT------- 81 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE----HHHHC-TT-SHHHH-------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEc-CCHHHhCCCC-CCceE-------
Confidence 35566666664 37998888 57888887753 2466666654 1111233311 11111
Q ss_pred eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
...|+++++|+|+-.+..+|.+..
T Consensus 82 -----------------~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 82 -----------------DPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp -------------------CC---SSSEEEECTSS-EEEHH
T ss_pred -----------------cceeeeeecceEEEECCCCccchh
Confidence 124799999999999877776543
No 145
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=67.74 E-value=12 Score=32.06 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred ccC-ceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCch
Q 005245 503 IME-QKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPK 549 (706)
Q Consensus 503 i~e-gK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~ 549 (706)
+.+ ++.+.+||++++ .-|+.|.+.+.++++..+.++.++.|..+..+
T Consensus 13 i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 61 (103)
T PF00085_consen 13 INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK 61 (103)
T ss_dssp HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH
T ss_pred HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc
Confidence 445 899999999932 33499999999998876558888888887543
No 146
>PRK10996 thioredoxin 2; Provisional
Probab=66.94 E-value=10 Score=36.07 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=34.6
Q ss_pred cccCceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 502 WIMEQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 502 ~i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.+++||.++|||.+ .|| +.+.+.+.+++++.+..+.++.|..++
T Consensus 48 ~i~~~k~vvv~F~a--~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~ 94 (139)
T PRK10996 48 LLQDDLPVVIDFWA--PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94 (139)
T ss_pred HHhCCCeEEEEEEC--CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 46689999999999 665 889999999988766667766665553
No 147
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=66.61 E-value=3.4 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.602 Sum_probs=20.8
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceee
Q 005245 669 HCNR-LILPGEAGRIPEKVVCAECGR-RMEEFI 699 (706)
Q Consensus 669 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~i 699 (706)
.|.+ +++=-..+. ++.+.||+||. .+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~ 41 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVI 41 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEec
Confidence 4664 444333344 89999999999 888754
No 148
>PF13728 TraF: F plasmid transfer operon protein
Probab=66.41 E-value=20 Score=37.03 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=57.3
Q ss_pred eecceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245 339 VSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 418 (706)
Q Consensus 339 V~Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV 418 (706)
--|..+.++.=++||-..+|+-|.. ...|...+.+ .-.|+|+-||+ |. ..+| ++
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~--~~pil~~~~~-----~yg~~v~~vs~-DG----------------~~~~--~f 166 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQ--QAPILQQFAD-----KYGFSVIPVSL-DG----------------RPIP--SF 166 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHH--HHHHHHHHHH-----HhCCEEEEEec-CC----------------CCCc--CC
Confidence 4567888888888889999887764 3344444442 23599999987 31 2233 22
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccH
Q 005245 419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA 458 (706)
Q Consensus 419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA 458 (706)
|.+- .|. -+.+.|++..-|.|++++|+++...+=|
T Consensus 167 p~~~-~~~----g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 167 PNPR-PDP----GQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred CCCC-CCH----HHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 2221 122 2455679999999999999885544433
No 149
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=66.36 E-value=7.6 Score=33.26 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=34.9
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccCCchhh
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKSNPKEK 551 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l---~~I~~~~~~~~E~v~Vgkdn~~e~ 551 (706)
-++||.|++|||+++ .||+.|...+ .++.+....+|-.+.|--+++...
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~ 66 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN 66 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence 358999999999965 6778887655 445443456888888877655443
No 150
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=65.76 E-value=12 Score=35.75 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=39.8
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhh
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRII 556 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~e~v~~~~ 556 (706)
+||.+.|||-+.+ ..|++..+.+.+++++. +..+.++.|+.|+++|.+++.+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH
Confidence 7899999998732 34588888888887653 4569999999998877766554
No 151
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=65.35 E-value=13 Score=32.99 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=35.5
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhhh
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIIS 557 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~~~~ 557 (706)
+||.+.|||-+ .|| ++..+.+.++++.....+.++.++ +...+.+++.++
T Consensus 20 ~gk~vvl~F~~--~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~ 72 (114)
T cd02967 20 PGRPTLLFFLS--PTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLK 72 (114)
T ss_pred CCCeEEEEEEC--CCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHH
Confidence 59999999987 565 777888888876644568888776 444555555443
No 152
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=64.92 E-value=16 Score=29.67 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=32.8
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 503 IMEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 503 i~egK~I~LYgg~d-~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
+.+++.+.||++++ -.+|+++.+.+.++++. ...+.++.|.-++
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~ 51 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE 51 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC
Confidence 34557888888775 36779999999999776 6677777776664
No 153
>PHA02125 thioredoxin-like protein
Probab=63.59 E-value=28 Score=29.42 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=12.2
Q ss_pred EEEEecCCCChhHH
Q 005245 350 LLLVSDLDVSNEEL 363 (706)
Q Consensus 350 lL~fSal~~~~~e~ 363 (706)
.++|++.||++|..
T Consensus 2 iv~f~a~wC~~Ck~ 15 (75)
T PHA02125 2 IYLFGAEWCANCKM 15 (75)
T ss_pred EEEEECCCCHhHHH
Confidence 47899999999985
No 154
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=63.09 E-value=17 Score=30.83 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=38.9
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeEEEeccCCc-hhhhhhhhhh
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG-IALEMLYVGKSNP-KEKARRIIST 558 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~-~~~E~v~Vgkdn~-~e~v~~~~~~ 558 (706)
.||++.++|.+.+ ..|+.+.+.+.++.+..+ ..+.++.|+.|.. .|.+++.++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 4899999998832 335888888888876543 5788999999875 6666655543
No 155
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=63.02 E-value=20 Score=29.92 Aligned_cols=44 Identities=7% Similarity=-0.005 Sum_probs=35.0
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHh--CCceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAA--GIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~--~~~~E~v~Vgkd 546 (706)
+.+++.+.++|.+++ .+|+.|.+.+.++++.. +..+.++.|.-+
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 567778888888863 67899999999988775 677888888665
No 156
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=62.41 E-value=16 Score=32.02 Aligned_cols=46 Identities=4% Similarity=-0.089 Sum_probs=36.1
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
+++++.+.++|.+.+ ..|+++.+.+.++++..+..+.+..|.-++.
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~ 61 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc
Confidence 567899999999832 4469999999999888666688888877754
No 157
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=9.7 Score=38.15 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhHHH---HHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEELF---LLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~~---~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
+.+|..++++.++||.|++.=.|.-| .++| -|+.+|++.+. ..|||+=.|.
T Consensus 12 ~~~G~~~~l~~~~GkVlLIVNtASkC--GfTpQYegLe~Ly~ky~~------~Gf~VLgFPc 65 (162)
T COG0386 12 DIDGEPVSLSDYKGKVLLIVNTASKC--GFTPQYEGLEALYKKYKD------KGFEVLGFPC 65 (162)
T ss_pred ccCCCCccHHHhCCcEEEEEEccccc--CCcHhHHHHHHHHHHHhh------CCcEEEeccc
Confidence 34678899999999999999999887 4554 59999999973 4699999997
No 158
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=60.49 E-value=18 Score=31.09 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=33.0
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
.|+.+.+||.+++ ..|+.+.+.+.++++..+..+-++.|.-++.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC
Confidence 4889999999932 3369999999999877555676777766643
No 159
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=60.29 E-value=25 Score=34.48 Aligned_cols=29 Identities=7% Similarity=-0.111 Sum_probs=21.3
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHH
Q 005245 345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRES 373 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~el 373 (706)
.+|.|.+-|+|.||+||.. |.|.++=+++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETI 52 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 4679999999999999976 3454444433
No 160
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=59.29 E-value=12 Score=33.11 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=34.8
Q ss_pred cCceEEEEEccCCh-hHHHHHHHHHHHH---HHHhCCceeEEEeccCCchhh
Q 005245 504 MEQKHICLYGGEDL-EWVRKFTALMGAV---ARAAGIALEMLYVGKSNPKEK 551 (706)
Q Consensus 504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I---~~~~~~~~E~v~Vgkdn~~e~ 551 (706)
.+||++.+||++.. .||+++.+.+.+. .......+.++++.-+..++.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDE 54 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccc
Confidence 48999999998853 6679998888754 333345799999998876544
No 161
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=59.24 E-value=19 Score=32.02 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=33.2
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHhC-CceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAAG-IALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~-~~~E~v~Vgkd 546 (706)
++.|+.+.|||.+ .|| +.+.+.+.+++++.+ ..+.++.|.-|
T Consensus 14 i~~~~~vvv~F~a--~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 14 LSNKGLTVVDVYQ--EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred HccCCeEEEEEEC--CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 5579999999999 665 999999999987754 34677777776
No 162
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=59.03 E-value=15 Score=35.91 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=35.1
Q ss_pred cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhh
Q 005245 504 MEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARR 554 (706)
Q Consensus 504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~ 554 (706)
..||.+.|||-+++ ..|+++.+.+.++++. .++++.|+.+...+..++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~ 109 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALK 109 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHH
Confidence 37999999998842 3358888888888654 589999987655555444
No 163
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=57.77 E-value=82 Score=29.60 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=54.4
Q ss_pred ecceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 340 SIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 340 ~Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
+++.+++|+=.|.++|.+........+.+.+++-+. .=..=.||++.+++.......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~----~l~eRdi~v~~i~~~~~~~~~------------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRC----GLDERDIVVIVITGDGARSPG------------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhh----ccccCceEEEEEeCCcccccc-------------------
Confidence 456778877777777765444333333333333210 112346888888763211111
Q ss_pred cCCCCCHHHHHHHHHhhCCC-CCcEEEEECCCCceecc
Q 005245 420 HPSAIDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 420 f~~~id~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~ 456 (706)
...+....+.|++.|++. +--.+|++|-||.+=..
T Consensus 59 --~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 59 --KPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred --CcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 233567788888999974 34789999999976543
No 164
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.24 E-value=20 Score=36.23 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=56.1
Q ss_pred ecCcEEEEEEecCCCChhHHHH-HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245 344 LRRKSVLLLVSDLDVSNEELFL-LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~~~-L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~ 422 (706)
-+||+.+|.|+...|+-|+..+ -..-=.++|+- -.+.|-++-+-+- +...-.|.. ++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEy---lk~hf~~~~l~i~-------~skpv~f~~------------g~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREY---LKEHFSAYYLNIS-------YSKPVLFKV------------GD 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHH---HhhCeEEEEEEec-------cCcceEeec------------Cc
Confidence 4689999999999999998753 11111223321 2346888888662 222222221 01
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
+-...-.+-|...|.+++-|++|..|-.|+.+
T Consensus 98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred eeeeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 00112355778889999999999999999886
No 165
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=15 Score=36.54 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=34.1
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhc----------ccCCCCCeEEEEEecc
Q 005245 346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQL----------SSRTESQYEVVWLPIV 392 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~----------~~~~~~~fEIVwIpiV 392 (706)
+..|++=|.|.||.||.. |+|+++=.+.+.. ..+.-++|+|=-||.|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 568999999999999988 7888887775410 0011268888888865
No 166
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=56.18 E-value=31 Score=29.77 Aligned_cols=43 Identities=7% Similarity=-0.123 Sum_probs=32.1
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.++.+.+||++++ ..|++|.+.+.++++.....+.+..+..+.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 5666888888842 456999999999987755567777776653
No 167
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=54.22 E-value=6.3 Score=29.77 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=9.4
Q ss_pred ceeecCCCCcccc
Q 005245 684 EKVVCAECGRRME 696 (706)
Q Consensus 684 ~~i~CpeC~R~ME 696 (706)
..+.||+|+|++-
T Consensus 3 ~~~~C~nC~R~v~ 15 (33)
T PF08209_consen 3 PYVECPNCGRPVA 15 (33)
T ss_dssp -EEE-TTTSSEEE
T ss_pred CeEECCCCcCCcc
Confidence 4689999999875
No 168
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=54.19 E-value=21 Score=30.32 Aligned_cols=44 Identities=5% Similarity=0.000 Sum_probs=33.5
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
.+|.+.|||.+.+ ..|+.+.+.+.++++..+..+.++.|..++.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 57 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC
Confidence 4679999998832 3459999999999877666788888877644
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=53.23 E-value=1.1e+02 Score=30.51 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=51.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccC--C-----CCcChhh-HHHHHHhhcCCC-ce
Q 005245 346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR--S-----TPWTEAK-EHKFEALQYMMP-WF 416 (706)
Q Consensus 346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~--s-----~~w~D~d-e~~Fe~~~~~MP-Wy 416 (706)
+|+...+|++.+||.|... +.++++. ..+-.+.++.+|+... | .-|...+ .+.+..+....+ .-
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~-----~~~l~~~--~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKL-----EKELKPN--ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCEEEEEEECCCCccHHHH-----HHHHhhc--cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 7889999999999998653 2223211 1233444444454321 0 0132222 234444443321 10
Q ss_pred eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
....- ..+.+-...+-+.+++++.|++|+ ++|+++
T Consensus 150 ~~~~~-~~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 150 PAASC-DNPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred Ccccc-CchHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 11111 112334446668999999999984 447764
No 170
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=52.51 E-value=7 Score=31.95 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=16.9
Q ss_pred ccceecCCC-CCC---CCceeecCCCCccc
Q 005245 670 CNRLILPGE-AGR---IPEKVVCAECGRRM 695 (706)
Q Consensus 670 C~~~~~p~~-~g~---ip~~i~CpeC~R~M 695 (706)
-|++.+|.. -.. =.+.+.||+|||.+
T Consensus 27 gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 27 GCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 456777632 111 16789999999975
No 171
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=51.95 E-value=20 Score=32.68 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=33.2
Q ss_pred cccCc-eEEEEEccCCh-hHHHHHHHHHH---HHHHHhCCceeEEEeccCC
Q 005245 502 WIMEQ-KHICLYGGEDL-EWVRKFTALMG---AVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 502 ~i~eg-K~I~LYgg~d~-~Wir~FT~~l~---~I~~~~~~~~E~v~Vgkdn 547 (706)
..++| |.|.++|++++ .||+++.+.+. ++++..+..+.++.|.-+.
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 59 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDG 59 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccC
Confidence 35699 99999999964 66788887663 4544434468888887764
No 172
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=51.56 E-value=10 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.529 Sum_probs=19.6
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceeee
Q 005245 669 HCNR-LILPGEAGRIPEKVVCAECGR-RMEEFIM 700 (706)
Q Consensus 669 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~i~ 700 (706)
.|.+ +++-...+. .+.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~s 42 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLLS 42 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEec
Confidence 3666 554322233 67789999998 6776544
No 173
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=51.37 E-value=23 Score=35.10 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=36.8
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhhh
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIIS 557 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~~~~ 557 (706)
.||.+.|+|-+.+ ..|++..+.+.++++. .++++.|+-+...+.+++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHH
Confidence 7999999998832 4458888888888643 688999997665666665443
No 174
>PHA02278 thioredoxin-like protein
Probab=49.13 E-value=25 Score=32.18 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=32.2
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkd 546 (706)
+++++.+.+||.+++ ..|+.+.+.+.+++++.+....++.|--|
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd 55 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLD 55 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECC
Confidence 458999999999943 33599999999997763444556666655
No 175
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=48.09 E-value=37 Score=32.12 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=34.4
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
.++.+.++|++ .|| +.+.+.+.+++++-...+.++.|--|+.
T Consensus 13 ~~~~vVV~F~A--~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~ 57 (114)
T cd02954 13 EEKVVVIRFGR--DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV 57 (114)
T ss_pred CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHccCceEEEEEECCCC
Confidence 57889999999 665 9999999999887555578888888754
No 176
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=47.68 E-value=26 Score=32.16 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=30.9
Q ss_pred CceEEEEEccCCh-hH-HHHHHHHHHHHHHHhC----CceeEEEeccCCc
Q 005245 505 EQKHICLYGGEDL-EW-VRKFTALMGAVARAAG----IALEMLYVGKSNP 548 (706)
Q Consensus 505 egK~I~LYgg~d~-~W-ir~FT~~l~~I~~~~~----~~~E~v~Vgkdn~ 548 (706)
.||++.|+|.... .. |+.-...+++++++.+ ..++++.|+.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 7999999997721 22 5566677777766533 3599999998754
No 177
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=47.64 E-value=39 Score=30.94 Aligned_cols=39 Identities=10% Similarity=-0.090 Sum_probs=31.4
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeEEEecc
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAA-GIALEMLYVGK 545 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~-~~~~E~v~Vgk 545 (706)
.||.+.|||-+ .|| +.-.+.+.+++++. +..++++.|+.
T Consensus 22 ~gk~vvl~F~a--~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWT--YCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 78999999977 575 77788888887764 46799999975
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.74 E-value=74 Score=35.22 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=81.9
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI 424 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i 424 (706)
.++.+.+.|-+.||.+|. .|...|.++... ..+ +|=+.-||
T Consensus 46 ~~~~~~v~fyapwc~~c~--~l~~~~~~~~~~---l~~---~~~~~~vd------------------------------- 86 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCK--KLAPTYKKLAKA---LKG---KVKIGAVD------------------------------- 86 (383)
T ss_pred cCCceEEEEECCCCcchh--hhchHHHHHHHH---hcC---ceEEEEeC-------------------------------
Confidence 367889999999998886 466666666321 222 45454444
Q ss_pred CHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhhccc--ccccccccCCCCcccc
Q 005245 425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETW--RIDLLADSVDPVIPTW 502 (706)
Q Consensus 425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w--~lelLvd~id~~I~~~ 502 (706)
....+.+.+.+++++-|+++++.|..+.+..... .-....+.|=....+..-..-.- ..+++.+..+..+.+
T Consensus 87 -~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~- 160 (383)
T KOG0191|consen 87 -CDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGP----RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD- 160 (383)
T ss_pred -chhhHHHHHhcCCccCcEEEEEcCCCceeeccCc----ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc-
Confidence 2445667788899999999999988444433320 00011122211111111110000 112222223322322
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAA--GIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~--~~~~E~v~Vgkd 546 (706)
.++.+.|-+| + .|| +.+.+.+.++++.. +..+++.-+..+
T Consensus 161 ~~~~~lv~f~--a--Pwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 161 SDADWLVEFY--A--PWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cCcceEEEEe--c--cccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 2344566665 3 666 77777777777643 466666666654
No 179
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=45.86 E-value=52 Score=27.38 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=36.3
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHHHHH
Q 005245 351 LLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIR 430 (706)
Q Consensus 351 L~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r 430 (706)
..|++.|||.|.-- .++.+++.. ...|+++.|.. +++ .....+
T Consensus 2 ~~f~~~~Cp~C~~~--~~~L~~~~i-----~~~~~~~~v~~--------~~~----------------------~~~~~~ 44 (84)
T TIGR02180 2 VVFSKSYCPYCKKA--KEILAKLNV-----KPAYEVVELDQ--------LSN----------------------GSEIQD 44 (84)
T ss_pred EEEECCCChhHHHH--HHHHHHcCC-----CCCCEEEEeeC--------CCC----------------------hHHHHH
Confidence 46899999998763 233333321 13599998853 111 123455
Q ss_pred HHHHhhCCCCCcEEEE
Q 005245 431 YAKEKWDFRKKPILVV 446 (706)
Q Consensus 431 ~ike~~~~~~iP~LVv 446 (706)
++.+..++...|.+++
T Consensus 45 ~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 45 YLEEITGQRTVPNIFI 60 (84)
T ss_pred HHHHHhCCCCCCeEEE
Confidence 6677778888999854
No 180
>PTZ00051 thioredoxin; Provisional
Probab=44.64 E-value=40 Score=29.04 Aligned_cols=31 Identities=0% Similarity=0.037 Sum_probs=24.4
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHH
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARA 533 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~ 533 (706)
+++++.+.|||++++ ..||+|.+.+.++++.
T Consensus 15 ~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~ 46 (98)
T PTZ00051 15 LSQNELVIVDFYAEWCGPCKRIAPFYEECSKE 46 (98)
T ss_pred HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 457899999999942 4458999999998776
No 181
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=44.47 E-value=32 Score=29.36 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=30.3
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHhCC--ceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAAGI--ALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~--~~E~v~Vgkd 546 (706)
++.|+.++|+|.+ .|| |+|.+.+.++++..+. .+-++.+.-+
T Consensus 10 ~~~~~~~~i~f~~--~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 10 VLSNKDVLVEFYA--PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred hccCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 4589999999999 665 8888989888775332 4555555544
No 182
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=44.37 E-value=45 Score=29.16 Aligned_cols=43 Identities=9% Similarity=-0.118 Sum_probs=32.3
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.++.+.++|.+++ .-|+.+.+.+.++++..+..+.+..|.-+.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 5779999999942 345999999999988755567777776653
No 183
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=44.14 E-value=30 Score=32.06 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=29.2
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHH--hCCceeEEEecc
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARA--AGIALEMLYVGK 545 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~--~~~~~E~v~Vgk 545 (706)
..+||-|+++|++++ .||+.+.+.+.+.+.. .+..|-.+-|..
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~ 61 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED 61 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC
Confidence 348999999999975 7779988887776543 233444444433
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=43.76 E-value=36 Score=29.79 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=33.0
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.|+.+.++|.+++ ..|+++.+.+.++++..+..+.++.|.-++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 6888999999942 335889999999988766667777777664
No 185
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=43.69 E-value=73 Score=27.23 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.0
Q ss_pred ceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245 506 QKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKS 546 (706)
Q Consensus 506 gK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkd 546 (706)
+|.+.++|.+++ .+|+.+.+.+.++++.....+-++.|.-+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 699999998843 55699999999997765445666665443
No 186
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=43.67 E-value=51 Score=30.23 Aligned_cols=45 Identities=4% Similarity=0.140 Sum_probs=32.3
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
+..++.+.+||++++ ..|+.+-+.+.++++.. ..++++.|..|..
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~ 64 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDED 64 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcC
Confidence 456788999999943 34588888898887664 4567777766643
No 187
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=42.21 E-value=1.6e+02 Score=30.83 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=54.3
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEE--eccc-CC-------CCcChh-hHHHHHHhhcCC
Q 005245 345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWL--PIVD-RS-------TPWTEA-KEHKFEALQYMM 413 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwI--piVd-~s-------~~w~D~-de~~Fe~~~~~M 413 (706)
.||++...||+.+||-|.-. . .++++.. ..+.+|.++ |+.. ++ .-|-.. ..+.|+..+..-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl--~---~~l~~~~---~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKL--H---EQMKDYN---ALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCCEEEEEEECCCChHHHHH--H---HHHHHHh---cCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 36888999999999999653 2 2232211 123666665 5421 11 013322 235565544332
Q ss_pred CceeeccCC-CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245 414 PWFSVHHPS-AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 454 (706)
Q Consensus 414 PWyAVpf~~-~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 454 (706)
+ ++-.. ..+.+-...+.+.++++|.|++|+ ++|+++
T Consensus 178 ~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 178 D---VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred C---CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 1 11110 113345567779999999999995 468776
No 188
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.20 E-value=13 Score=31.30 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=19.4
Q ss_pred cCCCCCcc--ceecCCCCCCCCceeecCCCCcc
Q 005245 664 NRTPYHCN--RLILPGEAGRIPEKVVCAECGRR 694 (706)
Q Consensus 664 ~~~~~~C~--~~~~p~~~g~ip~~i~CpeC~R~ 694 (706)
.+-||+|. |..+--.-.+| +|+|.+|||+
T Consensus 13 MKK~H~Cg~NrwkIiRvGaDI--kikC~nC~h~ 43 (60)
T COG4481 13 MKKPHACGTNRWKIIRVGADI--KIKCENCGHS 43 (60)
T ss_pred ecCCCccccceEEEEEecCcE--EEEecCCCcE
Confidence 34488884 55554333344 7999999996
No 189
>PRK09381 trxA thioredoxin; Provisional
Probab=40.74 E-value=51 Score=29.16 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred cCceEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 504 MEQKHICLYGGEDLEW---VRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 504 ~egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
..++.+.++|-+ .| |+.+.+.+.++++..+..+.++.|.-+..
T Consensus 19 ~~~~~vvv~f~~--~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~ 64 (109)
T PRK09381 19 KADGAILVDFWA--EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64 (109)
T ss_pred cCCCeEEEEEEC--CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC
Confidence 357889999988 56 59999999999887666688888877743
No 190
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=40.69 E-value=13 Score=29.68 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.9
Q ss_pred ceeecCCCCcccce
Q 005245 684 EKVVCAECGRRMEE 697 (706)
Q Consensus 684 ~~i~CpeC~R~ME~ 697 (706)
..+.|++||+.|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 56899999999954
No 191
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=39.98 E-value=38 Score=30.36 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=32.0
Q ss_pred cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc-hhhhhhhh
Q 005245 504 MEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP-KEKARRII 556 (706)
Q Consensus 504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~-~e~v~~~~ 556 (706)
..||.+.|||.+.+ ..|+.+.+.+.+++++ ++++.|+-++. .+.++...
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~ 68 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFM 68 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHH
Confidence 37899999998731 3348888888888755 56666665532 45544443
No 192
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=39.67 E-value=43 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=31.9
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.||.+.++|.+ .|| +.+.+.+.+++++. ..+.++.|..|.
T Consensus 14 ~~k~vvv~F~a--~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~ 56 (103)
T cd02985 14 KGRLVVLEFAL--KHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDE 56 (103)
T ss_pred CCCEEEEEEEC--CCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCC
Confidence 48999999999 665 99999999998875 456677777663
No 193
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=39.41 E-value=67 Score=27.54 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=32.8
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-C-CceeEEEeccCC
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-G-IALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~-~~~E~v~Vgkdn 547 (706)
.||.+.|+|.+++ .+|+.|.+.+.++++.. + ..+.++.|.-++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 5789999998853 66799999999998763 2 467778777663
No 194
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=66 Score=35.44 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred eecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245 339 VSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF 416 (706)
Q Consensus 339 V~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy 416 (706)
.-+..-+.+.|+.+|=+.||++|.- +.|.++=.+-+ +.|+.+=|=+ |++
T Consensus 36 ~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--------D~~-------------- 86 (304)
T COG3118 36 EVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--------DAE-------------- 86 (304)
T ss_pred HHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--------Ccc--------------
Confidence 3445567789999999999988764 56666665553 6798888843 221
Q ss_pred eeccCCCCCHHHHHHHHHhhCCCCCcEEEEEC---C----CCceecccHHHHHHHhCcc
Q 005245 417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLD---P----QGRVVNQNALHMMWIWGSV 468 (706)
Q Consensus 417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~---p----qGkv~~~nA~~mI~~wG~~ 468 (706)
.-|.-.|+++.||+++++- | +|-.=.+--.+++...+..
T Consensus 87 -------------p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 87 -------------PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred -------------hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 1234567999999999883 1 3433334566777777766
No 195
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=38.83 E-value=44 Score=28.73 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=30.6
Q ss_pred ccCceEEEEEccCChhH---HHHHHHHHHHHHHHhC---CceeEEEeccCC
Q 005245 503 IMEQKHICLYGGEDLEW---VRKFTALMGAVARAAG---IALEMLYVGKSN 547 (706)
Q Consensus 503 i~egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~~---~~~E~v~Vgkdn 547 (706)
+..|+ +.++|.+ .| |+.+.+.+.++++..+ ..+.++.|.-++
T Consensus 14 ~~~~~-~lv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~ 61 (102)
T cd03005 14 IAEGN-HFVKFFA--PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ 61 (102)
T ss_pred hhcCC-EEEEEEC--CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 44565 8888988 56 5899999999987643 367777776653
No 196
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.90 E-value=1.5e+02 Score=39.05 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHhhhhhhccCCCcC---CCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhcccccccccccccccch
Q 005245 185 ETLSNLITAMLDLTKCIVEVKELPSD---YITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTET 261 (706)
Q Consensus 185 ~~ln~Lvk~m~~V~~cIie~~~L~~~---y~~~dvpal~~a~~~IP~~vYW~I~siVac~~qi~~l~~~~~~~~~s~~~~ 261 (706)
.+=+.++..|.++.+|++.+-.-|++ ++.+ .+-+..|+-.--=++-++|+|.+-+.+=.+.|.+
T Consensus 1091 ~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLE-----e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~-------- 1157 (1692)
T KOG1020|consen 1091 IEEAQFLYYVIQILECVLPLVANPSESFLASLE-----EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK-------- 1157 (1692)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH--------
Confidence 35678899999999999999888875 2221 1345677777667788888887766643223332
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH--H-----HHHHHHHHhhhccchhHHHHHhhhcccCCCCCccccCC
Q 005245 262 WELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQI--E-----SYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECP 334 (706)
Q Consensus 262 ~eLS~l~~Kl~~i~~~L~~ql~~c~~~I~~~~~~--e-----~y~~l~~lf~~~~~D~~~vL~k~LI~~k~~~~pl~dg~ 334 (706)
.++.=+..|.+.++..++. | .++.+.+.+-+. .+|...-+-..|..+|.
T Consensus 1158 ---------------~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsiftl---------G~l~Ryfdf~~~~~~g~ 1213 (1692)
T KOG1020|consen 1158 ---------------VVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTL---------GLLSRYFDFPKPSNDGK 1213 (1692)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHH---------HHHHHhccCCCccCCCc
Confidence 2333333444444442222 2 346666655444 67777777778888888
Q ss_pred CCc
Q 005245 335 TKR 337 (706)
Q Consensus 335 ~~~ 337 (706)
+--
T Consensus 1214 ~~~ 1216 (1692)
T KOG1020|consen 1214 TFL 1216 (1692)
T ss_pred cch
Confidence 743
No 197
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=37.89 E-value=55 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=26.5
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEe
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYV 543 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l---~~I~~~~~~~~E~v~V 543 (706)
-++||.|+||+++|+ .||+.+.... .+|++.++..|=+|.+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l 64 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNL 64 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEE
Confidence 459999999999954 5566666543 4455544556644444
No 198
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=37.80 E-value=54 Score=29.08 Aligned_cols=47 Identities=6% Similarity=-0.044 Sum_probs=32.4
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC------CceeEEEeccCCc
Q 005245 502 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAG------IALEMLYVGKSNP 548 (706)
Q Consensus 502 ~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~------~~~E~v~Vgkdn~ 548 (706)
-+++++.++++|.+.+ ..|++|.+.+.++++... ..+.+..|.-|+.
T Consensus 14 ~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 14 ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 3568899999999932 335888888888766421 2477777766643
No 199
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=37.71 E-value=2.2e+02 Score=23.40 Aligned_cols=86 Identities=15% Similarity=-0.035 Sum_probs=43.7
Q ss_pred EEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEEecccCCCC--cChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245 351 LLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP--WTEAKEHKFEALQYMMPWFSVHHPSAIDP 426 (706)
Q Consensus 351 L~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~--w~D~de~~Fe~~~~~MPWyAVpf~~~id~ 426 (706)
.+|++..||.|... .|.++- + ....+.+++|.|+.-.... .+............. ...-.+-+ .
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~ 69 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLL---Y----ADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ--GKFEALHE---A 69 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHH---h----hcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHc--CcHHHHHH---H
Confidence 47888889888773 344443 1 1356799999987432110 111111111111110 00001100 0
Q ss_pred HHHHHHHHhhCCCCCcEEEEEC
Q 005245 427 AVIRYAKEKWDFRKKPILVVLD 448 (706)
Q Consensus 427 ~~~r~ike~~~~~~iP~LVvL~ 448 (706)
-.-..+-+.+++.+.|++|+-|
T Consensus 70 l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 70 LADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHcCCCCCCEEEECC
Confidence 0233445778999999999987
No 200
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=36.92 E-value=16 Score=25.63 Aligned_cols=13 Identities=46% Similarity=1.030 Sum_probs=10.5
Q ss_pred ceeecCCCCcccc
Q 005245 684 EKVVCAECGRRME 696 (706)
Q Consensus 684 ~~i~CpeC~R~ME 696 (706)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 3678999999764
No 201
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=36.66 E-value=56 Score=29.20 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=30.2
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccC
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKS 546 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkd 546 (706)
.||.+.++|.+ .|| +.+.+.+.++++..+ .+..+-|..+
T Consensus 17 ~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYA--SWCPFSASFRPHFNALSSMFP-QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc-cCceEEEECC
Confidence 89999999999 675 999999999987644 3555555443
No 202
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=36.48 E-value=59 Score=29.46 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=32.3
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHh-CCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAA-GIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~-~~~~E~v~Vgkdn 547 (706)
.||.+.++|-+ .|| +.+.+.+.++++.. +..+.++.|.-++
T Consensus 23 ~~~~vlV~F~a--~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~ 67 (111)
T cd02963 23 FKKPYLIKITS--DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH 67 (111)
T ss_pred CCCeEEEEEEC--CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc
Confidence 78999999999 676 88888888887764 3457888887664
No 203
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=35.34 E-value=59 Score=32.46 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=32.8
Q ss_pred cCceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCCchhhhhh
Q 005245 504 MEQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSNPKEKARR 554 (706)
Q Consensus 504 ~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~ 554 (706)
..||.+.|||.+ .|| ++..+.+.+++++. .+.++.|+.+++ +.+++
T Consensus 72 ~~gk~vvl~F~a--twCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~~-~~~~~ 120 (189)
T TIGR02661 72 APGRPTLLMFTA--PSCPVCDKLFPIIKSIARAE--ETDVVMISDGTP-AEHRR 120 (189)
T ss_pred cCCCEEEEEEEC--CCChhHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHH
Confidence 389999999988 565 88788888886553 467889986644 34443
No 204
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=34.76 E-value=34 Score=28.52 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=20.9
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCccccee
Q 005245 669 HCNR-LILPGEAGRIPEKVVCAECGRRMEEF 698 (706)
Q Consensus 669 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~ 698 (706)
.|.. +.+|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 3666 77775432 7789999999999884
No 205
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=34.08 E-value=43 Score=35.84 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=33.7
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
.||++.+||-+ .|| +.+.+.+.+++++.+ ++++.|+.|.
T Consensus 165 ~~k~~Lv~F~A--swCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 165 AKKSGLFFFFK--SDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred cCCeEEEEEEC--CCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 68999999999 565 999999999988755 8899999884
No 206
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=34.01 E-value=75 Score=32.00 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=35.6
Q ss_pred cCcEEEEEEecCCCChhHH--------HHHHHHHHHHhhcccCCCCCeEEEEEecc-cCCCCcChhhHHHHHHhhcCCCc
Q 005245 345 RRKSVLLLVSDLDVSNEEL--------FLLEQMYRESRQLSSRTESQYEVVWLPIV-DRSTPWTEAKEHKFEALQYMMPW 415 (706)
Q Consensus 345 ~gK~VlL~fSal~~~~~e~--------~~L~~iY~elk~~~~~~~~~fEIVwIpiV-d~s~~w~D~de~~Fe~~~~~MPW 415 (706)
++|.|+|.|...||.-|.. +.+.++.|+- ||||- |+ |+ +...+.
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~--------------FI~VkvDr-----ee-~Pdid~------- 88 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN--------------FIPVKVDR-----EE-RPDIDK------- 88 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH---------------EEEEEET-----TT--HHHHH-------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC--------------EEEEEecc-----cc-CccHHH-------
Confidence 5899999999999876654 1344444432 66662 32 11 122221
Q ss_pred eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245 416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 455 (706)
Q Consensus 416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 455 (706)
....+.....+..|=|+-|+|+|+|+.+.
T Consensus 89 -----------~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 89 -----------IYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp -----------HHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred -----------HHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 11222223336779999999999999875
No 207
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.75 E-value=80 Score=29.37 Aligned_cols=43 Identities=7% Similarity=-0.058 Sum_probs=34.1
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245 503 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSN 547 (706)
Q Consensus 503 i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~~~~E~v~Vgkdn 547 (706)
+++++.+.+.|-+ .|| +.+.+.+.++++..+..+.++-|--+.
T Consensus 26 ~~~~~~vlV~FyA--~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~ 71 (113)
T cd03006 26 RTDAEVSLVMYYA--PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW 71 (113)
T ss_pred ccCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 3588999999999 675 899999999988765567777776553
No 208
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.66 E-value=18 Score=31.26 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=13.5
Q ss_pred CCceeecCCCCcccce
Q 005245 682 IPEKVVCAECGRRMEE 697 (706)
Q Consensus 682 ip~~i~CpeC~R~ME~ 697 (706)
..-++.||.||++.+-
T Consensus 4 ~~~~v~CP~Cgkpv~w 19 (65)
T COG3024 4 LRITVPCPTCGKPVVW 19 (65)
T ss_pred ccccccCCCCCCcccc
Confidence 3458999999999887
No 209
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=31.98 E-value=74 Score=34.04 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=56.6
Q ss_pred ecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCcee
Q 005245 340 SIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFS 417 (706)
Q Consensus 340 ~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyA 417 (706)
-|..|.+++=++||-..+|+-|.. ++|...=++- .++|+-||+ |. . ..| .
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---------g~~v~~VS~-DG-------~---------~~p--~ 188 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---------GLSVIPVSV-DG-------V---------INP--L 188 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-CC-------C---------CCC--C
Confidence 467788888899999999877765 5666554443 499999997 32 1 111 1
Q ss_pred eccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHH
Q 005245 418 VHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALH 460 (706)
Q Consensus 418 Vpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~ 460 (706)
+|-+- .|.. ..+.++++.-|.|++++|+++..-+=|.+
T Consensus 189 fp~~~-~d~g----qa~~l~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 189 LPDSR-TDQG----QAQRLGVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred CCCCc-cChh----HHHhcCCcccceEEEEECCCCcEEEEeec
Confidence 11110 1222 12678999999999999987555444433
No 210
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=31.01 E-value=1.1e+02 Score=26.04 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=32.1
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCC
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSN 547 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn 547 (706)
.+|.++++|.+++ ..|++|.+.+.++++..+ ..+.++.+.-++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 5678999998842 445899999999987644 468887777664
No 211
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=30.91 E-value=29 Score=40.63 Aligned_cols=26 Identities=38% Similarity=0.903 Sum_probs=20.6
Q ss_pred CCCCCceeecCCCCcccce--------eeeecc-c
Q 005245 679 AGRIPEKVVCAECGRRMEE--------FIMYRC-C 704 (706)
Q Consensus 679 ~g~ip~~i~CpeC~R~ME~--------~i~YkC-C 704 (706)
.+..|=...||+|||.... .|.|+| |
T Consensus 162 ~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~c 196 (515)
T TIGR00467 162 ENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCEC 196 (515)
T ss_pred CCceeeeeecCCcCccCceEEEecCCceEEEEcCC
Confidence 6678889999999998742 377888 6
No 212
>PRK02935 hypothetical protein; Provisional
Probab=30.78 E-value=26 Score=33.11 Aligned_cols=21 Identities=19% Similarity=0.623 Sum_probs=14.8
Q ss_pred eeecCCCCccccee-eeecccC
Q 005245 685 KVVCAECGRRMEEF-IMYRCCT 705 (706)
Q Consensus 685 ~i~CpeC~R~ME~~-i~YkCCh 705 (706)
.|.||+|+++...- -.+.|-|
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~ 91 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMH 91 (110)
T ss_pred eeECCCCCchhhhccceeecCc
Confidence 46888888887766 5556644
No 213
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=30.50 E-value=1.1e+02 Score=34.23 Aligned_cols=105 Identities=8% Similarity=-0.029 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh--hhHHHHHHhhcC---------CCceeeccCCCCCHHH
Q 005245 360 NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKFEALQYM---------MPWFSVHHPSAIDPAV 428 (706)
Q Consensus 360 ~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D--~de~~Fe~~~~~---------MPWyAVpf~~~id~~~ 428 (706)
++.+..|.+..+++++.+....+..-|+|.=+ .-|.. .--+.+++.-.. .-|+....+. +...
T Consensus 210 ~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~----~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e--~~dp 283 (380)
T TIGR02263 210 EEHNQMLADYLAAARKQEAPIKDNCRVIICGM----FCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVAL--AGDP 283 (380)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCEEEEECc----CCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCC--CCCH
Confidence 45556799999998755433446789999742 22333 233445554322 3344433221 2234
Q ss_pred HHHHHHhhCCCCCcEEEEECCC--CceecccHHHHHHHhCcccccC
Q 005245 429 IRYAKEKWDFRKKPILVVLDPQ--GRVVNQNALHMMWIWGSVAFPF 472 (706)
Q Consensus 429 ~r~ike~~~~~~iP~LVvL~pq--Gkv~~~nA~~mI~~wG~~AFPF 472 (706)
.+.|.+++-....|+-+..+|. +|. ....+|+.+|++||-=|
T Consensus 284 ~~aLA~~Yl~~~~~c~~~~~~~~~~R~--~~i~~lvke~~aDGVI~ 327 (380)
T TIGR02263 284 LQNLALAFLHDSISTAAKYDDDEADKG--KYLLDQVRKNAAEGVIF 327 (380)
T ss_pred HHHHHHHHhhCCCCCccccCCChhhHH--HHHHHHHHHhCCCEEEE
Confidence 6677777743445554445553 344 67788889998888433
No 214
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=30.47 E-value=79 Score=27.90 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=30.7
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeEEEeccC
Q 005245 503 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAA---GIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~---~~~~E~v~Vgkd 546 (706)
+.+++.+.|+|.+ .|| +++.+.+.++++.. +..+.+..+.-+
T Consensus 12 ~~~~~~vlv~f~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 12 VRKEDIWLVDFYA--PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred hccCCeEEEEEEC--CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 4567899999999 665 88899998887763 345666666544
No 215
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.24 E-value=33 Score=30.21 Aligned_cols=25 Identities=24% Similarity=0.731 Sum_probs=16.5
Q ss_pred CCCceeecCCCCccccee-----eeecccC
Q 005245 681 RIPEKVVCAECGRRMEEF-----IMYRCCT 705 (706)
Q Consensus 681 ~ip~~i~CpeC~R~ME~~-----i~YkCCh 705 (706)
+......||+||.++|+- +.|-|=|
T Consensus 26 ~~~~~a~CPdC~~~Le~LkACGAvdYFC~~ 55 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVLKACGAVDYFCNH 55 (70)
T ss_dssp EEEEEEE-TTT-SB-EEEEETTEEEEE-TT
T ss_pred cceecccCCCcccHHHHHHHhcccceeecc
Confidence 466778999999999996 7887744
No 216
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=29.99 E-value=69 Score=34.35 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=56.3
Q ss_pred eecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245 339 VSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF 416 (706)
Q Consensus 339 V~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy 416 (706)
--|..|.+++=++||-..+|+-|.. ++|...=++ -.++|+-||+ |. .--..|.+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~---------ygi~v~~VS~-DG------~~~p~fp~-------- 198 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKE---------YGISVIPISV-DG------TLIPGLPN-------- 198 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHH---------hCCeEEEEec-CC------CCCCCCCC--------
Confidence 3567788898899999999887764 345444333 2499999997 31 00111221
Q ss_pred eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHH
Q 005245 417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALH 460 (706)
Q Consensus 417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~ 460 (706)
+- .|. -+.++|+++.-|.|++++|+++...+=|.+
T Consensus 199 ----~~-~d~----gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 199 ----SR-SDS----GQAQHLGVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred ----cc-CCh----HHHHhcCCccCceEEEEECCCCcEEEEeec
Confidence 10 022 235667999999999999996655544443
No 217
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=29.43 E-value=41 Score=28.77 Aligned_cols=23 Identities=22% Similarity=0.690 Sum_probs=20.4
Q ss_pred CCCCceeecCCCCcccceeeeec
Q 005245 680 GRIPEKVVCAECGRRMEEFIMYR 702 (706)
Q Consensus 680 g~ip~~i~CpeC~R~ME~~i~Yk 702 (706)
|+-|..+.||.|+...+..|.|+
T Consensus 2 ~~~p~~~~CP~C~~~~~T~v~~~ 24 (73)
T PF10601_consen 2 GPEPVRIYCPYCQQQVQTRVEYK 24 (73)
T ss_pred CCCceeeECCCCCCEEEEEEEEE
Confidence 67899999999999999888775
No 218
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.25 E-value=48 Score=31.14 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHhhhhcCCCCCccc--eecCCCCCCCCceeecCCCCccccee-eeecc
Q 005245 656 AMNDYLNENRTPYHCNR--LILPGEAGRIPEKVVCAECGRRMEEF-IMYRC 703 (706)
Q Consensus 656 Af~ey~~~~~~~~~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-i~YkC 703 (706)
+|+.+|+-+...-.|.. +++- .+|.+..|++||+..+.- ..+.|
T Consensus 43 ~L~faf~~~~~~t~~ega~L~I~----~~p~~~~C~~Cg~~~~~~~~~~~C 89 (115)
T TIGR00100 43 QLQFAFEVVREGTVAEGAKLNIE----DEPVECECEDCSEEVSPEIDLYRC 89 (115)
T ss_pred HHHHHHHHHhCCCccCCCEEEEE----eeCcEEEcccCCCEEecCCcCccC
Confidence 44555554433334433 4433 477778888888776664 34455
No 219
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=28.90 E-value=1.5e+02 Score=24.26 Aligned_cols=46 Identities=26% Similarity=0.186 Sum_probs=33.5
Q ss_pred eecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 339 VSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 339 V~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
.....++++.+.+.|-+.||++|.. +.|.++.++... ..+++.|-+
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-------~~~~~~i~~ 72 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-------DVEVVAVNV 72 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-------CcEEEEEEC
Confidence 3444445888888877999999887 678888888751 577777754
No 220
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=28.63 E-value=1.7e+02 Score=24.16 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=33.4
Q ss_pred EEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhh
Q 005245 508 HICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKA 552 (706)
Q Consensus 508 ~I~LYgg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v 552 (706)
.|-+|.+.+-..|++..+.+.+++++.+..++++.|.-+...+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~ 46 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA 46 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH
Confidence 355777765567799999999998776667888888877655443
No 221
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=28.52 E-value=1.1e+02 Score=24.25 Aligned_cols=51 Identities=6% Similarity=-0.064 Sum_probs=0.0
Q ss_pred EEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245 350 LLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 419 (706)
Q Consensus 350 lL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp 419 (706)
..+|++.||+.|. .+....++.. .++..+.+ +++.+..+++...-+..+||
T Consensus 2 i~lf~~~~C~~C~--~~~~~l~~~~---------i~~~~vdi--------~~~~~~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCK--KAKEYLTSKG---------IAFEEIDV--------EKDSAAREEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHH--HHHHHHHHCC---------CeEEEEec--------cCCHHHHHHHHHHhCCCccc
No 222
>PRK07218 replication factor A; Provisional
Probab=28.27 E-value=23 Score=40.47 Aligned_cols=11 Identities=9% Similarity=-0.179 Sum_probs=6.3
Q ss_pred hHHHhhhhccc
Q 005245 476 REEALWKEETW 486 (706)
Q Consensus 476 r~eeL~~~e~w 486 (706)
++.+|.....|
T Consensus 164 kI~DL~~g~~~ 174 (423)
T PRK07218 164 KLIDLGPGDRG 174 (423)
T ss_pred chhhccCCCCc
Confidence 45566655555
No 223
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=90 Score=31.82 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
..+|..|+++.++||.|++-=-|.-|.--+ -..|.+.|++.+. ..|+|+--|.
T Consensus 21 d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~------~Gl~ILaFPC 75 (171)
T KOG1651|consen 21 DLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD------QGLEILAFPC 75 (171)
T ss_pred cCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh------CCeEEEEecc
Confidence 346789999999999999988888764322 3479999999974 4599999998
No 224
>PHA03050 glutaredoxin; Provisional
Probab=27.99 E-value=72 Score=29.54 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=22.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEE
Q 005245 350 LLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWL 389 (706)
Q Consensus 350 lL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwI 389 (706)
...||..|||.|.. ..++-++++. ....||++-|
T Consensus 15 V~vys~~~CPyC~~--ak~~L~~~~i----~~~~~~~i~i 48 (108)
T PHA03050 15 VTIFVKFTCPFCRN--ALDILNKFSF----KRGAYEIVDI 48 (108)
T ss_pred EEEEECCCChHHHH--HHHHHHHcCC----CcCCcEEEEC
Confidence 45789999999854 3444455431 2236999888
No 225
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=27.96 E-value=93 Score=28.55 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=33.8
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
|.+++.|.+||.+++ ..|+...+.+.+++++. ..+-++.|.-++.
T Consensus 19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~ 64 (113)
T cd02989 19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKA 64 (113)
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccC
Confidence 557788999998843 44699999999998763 2467788877743
No 226
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=29 Score=33.41 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=11.4
Q ss_pred CCceeecCCCCccc
Q 005245 682 IPEKVVCAECGRRM 695 (706)
Q Consensus 682 ip~~i~CpeC~R~M 695 (706)
+-...+||||||.-
T Consensus 95 ~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 95 IEGELVCPETGRVF 108 (124)
T ss_pred ccceEecCCCCcEe
Confidence 66788999999964
No 227
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=27.63 E-value=67 Score=27.63 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=25.8
Q ss_pred cccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHh
Q 005245 500 PTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAA 534 (706)
Q Consensus 500 ~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~ 534 (706)
.+.++.++.++++|.+++ ..|+++.+.+.++++..
T Consensus 11 ~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 11 RKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred HHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 334668889999999942 44688888888887653
No 228
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.53 E-value=26 Score=24.65 Aligned_cols=13 Identities=23% Similarity=0.979 Sum_probs=7.6
Q ss_pred eeecCCCCcccce
Q 005245 685 KVVCAECGRRMEE 697 (706)
Q Consensus 685 ~i~CpeC~R~ME~ 697 (706)
++.||+||...+.
T Consensus 2 ~~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 2 EMFCPNCGAEIDP 14 (26)
T ss_pred cCCCcccCCcCCc
Confidence 3567777765443
No 229
>PF14369 zf-RING_3: zinc-finger
Probab=27.32 E-value=44 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=14.3
Q ss_pred CCccceecCCCCCCCCceeecCCCCc
Q 005245 668 YHCNRLILPGEAGRIPEKVVCAECGR 693 (706)
Q Consensus 668 ~~C~~~~~p~~~g~ip~~i~CpeC~R 693 (706)
|.|++.+-+...+ .+.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~--~~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSP--DSDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCC--CCCcCCcCCCC
Confidence 6799866543221 12247999973
No 230
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=55 Score=38.30 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=43.0
Q ss_pred CCccccCCCCceeecce---------ecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 327 QLPLVECPTKRKVSIDV---------LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 327 ~~pl~dg~~~~kV~Is~---------L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
.||+-+-.++..|.+-| =++|.|++=|=|.||++|. .|..+|++|.+. -.++=+|||-=|
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk--~laP~~eeLAe~---~~~~~~vviAKm 424 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCK--ALAPIYEELAEK---YKDDENVVIAKM 424 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhh--hhhhHHHHHHHH---hcCCCCcEEEEe
Confidence 36666666655444321 2489999999999999886 588899999764 233568999876
No 231
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=26.64 E-value=39 Score=39.42 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=21.4
Q ss_pred CCCCCceeecCCCCccccee----------eeecc-cC
Q 005245 679 AGRIPEKVVCAECGRRMEEF----------IMYRC-CT 705 (706)
Q Consensus 679 ~g~ip~~i~CpeC~R~ME~~----------i~YkC-Ch 705 (706)
.+.+|=...||+|||...+- |.|.| |.
T Consensus 169 ~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG 206 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECG 206 (510)
T ss_pred CCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCC
Confidence 67788899999999998643 67777 54
No 232
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.21 E-value=27 Score=33.32 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=12.6
Q ss_pred ceeecCCCCccccee-eeecccC
Q 005245 684 EKVVCAECGRRMEEF-IMYRCCT 705 (706)
Q Consensus 684 ~~i~CpeC~R~ME~~-i~YkCCh 705 (706)
-.|.||+|+|+-... =...|-|
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~ 90 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMH 90 (114)
T ss_pred eeeECCCCCChHhhhchhhccCc
Confidence 356688887775544 3344533
No 233
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=25.80 E-value=86 Score=28.09 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=32.2
Q ss_pred cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeEEEeccC
Q 005245 504 MEQKHICLYGGEDL-EWVRKFTALMGAVARAAG-IALEMLYVGKS 546 (706)
Q Consensus 504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~-~~~E~v~Vgkd 546 (706)
+.||.+++.|.+++ ..|+++.+.+.++++..+ ..+.+..|.-|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 46889999999842 446999999999987644 45777777665
No 234
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=25.66 E-value=28 Score=29.07 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=7.2
Q ss_pred ceeecCCCCcccce
Q 005245 684 EKVVCAECGRRMEE 697 (706)
Q Consensus 684 ~~i~CpeC~R~ME~ 697 (706)
..-+||+|++++..
T Consensus 23 ~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 23 QPATCPICGAVIRQ 36 (54)
T ss_dssp --EE-TTT--EESS
T ss_pred CCCCCCcchhhccc
Confidence 34689999998864
No 235
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=99 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=27.0
Q ss_pred ccCceEEEEEccCC------hhHHHHHHHHHHHHHH---H--hCCceeEEEeccC
Q 005245 503 IMEQKHICLYGGED------LEWVRKFTALMGAVAR---A--AGIALEMLYVGKS 546 (706)
Q Consensus 503 i~egK~I~LYgg~d------~~Wir~FT~~l~~I~~---~--~~~~~E~v~Vgkd 546 (706)
+..||+|++||-.+ -.||=+--.+.--|.+ + .+..|=.||||..
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 44788888888332 2798444433332222 2 3667888899986
No 236
>PF10871 DUF2748: Protein of unknown function (DUF2748); InterPro: IPR020183 This entry represents proteins that are mainly confined to Rickettsia and Orientia. The proteins, which include RP364 and RC0048, are currently uncharacterised.
Probab=25.28 E-value=2.4e+02 Score=31.44 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhccchhHHHH--Hh--hhcccCCCC--------CccccC
Q 005245 267 LAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLM-ETIHIDNMKVL--NR--LLIHTKDDQ--------LPLVEC 333 (706)
Q Consensus 267 l~~Kl~~i~~~L~~ql~~c~~~I~~~~~~e~y~~l~~lf-~~~~~D~~~vL--~k--~LI~~k~~~--------~pl~dg 333 (706)
.-||+++|.+.|++|...-. --+ -|.-.+|-++| +..|.=+..-| +| .+|.-...+ -.-..|
T Consensus 91 vi~Ki~si~d~LkKqi~~~~--~Vk---kev~~~LARlFVQSAHPIVI~WLLL~ktEvFitYS~nIGDmMDiv~Wq~vG~ 165 (447)
T PF10871_consen 91 VIQKINSIFDNLKKQIQKLQ--PVK---KEVTEMLARLFVQSAHPIVIRWLLLNKTEVFITYSHNIGDMMDIVSWQRVGG 165 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hhH---HHHHHHHHHHHHhccCcceeeeehhcceeEEEEeccchhHHHHHHHHHHhcC
Confidence 45899999999999875432 233 46677888888 45553322221 11 111111111 111233
Q ss_pred CCCceeecceecCcEEEEEEecCCCC
Q 005245 334 PTKRKVSIDVLRRKSVLLLVSDLDVS 359 (706)
Q Consensus 334 ~~~~kV~Is~L~gK~VlL~fSal~~~ 359 (706)
+.| ..+..||.|..|.|-...|
T Consensus 166 NSG----MQS~NGkdvAIfVSCGGNP 187 (447)
T PF10871_consen 166 NSG----MQSTNGKDVAIFVSCGGNP 187 (447)
T ss_pred cCc----ccccCCCcEEEEEecCCCc
Confidence 343 4588999999999987765
No 237
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=25.24 E-value=2.7e+02 Score=31.61 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=37.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhh
Q 005245 262 WELSSLAHKINSIYNHLLQQLKLCHQLIE----EKRQIESYQALVRLME 306 (706)
Q Consensus 262 ~eLS~l~~Kl~~i~~~L~~ql~~c~~~I~----~~~~~e~y~~l~~lf~ 306 (706)
-++.++.+-|..+++-|-+|-+.|..=+. +....++|+.+.+...
T Consensus 199 ~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~ 247 (412)
T PF04108_consen 199 KELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLE 247 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 56788889999999999999999998887 5566677877777664
No 238
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=25.13 E-value=1.1e+02 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=34.1
Q ss_pred ccccCceEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245 501 TWIMEQKHICLYGGEDLEW---VRKFTALMGAVARAAGIALEMLYVGKSNP 548 (706)
Q Consensus 501 ~~i~egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~~~~~E~v~Vgkdn~ 548 (706)
+++..|....+.|++++.| |+.+.+.+.+++++.+..+.++.|.-|..
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 5556655555555664434 59999999999988777788888877743
No 239
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=24.53 E-value=32 Score=26.54 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.7
Q ss_pred eecCCCCcccce
Q 005245 686 VVCAECGRRMEE 697 (706)
Q Consensus 686 i~CpeC~R~ME~ 697 (706)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 579999988854
No 240
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=24.26 E-value=36 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.8
Q ss_pred ecCCCCccccee
Q 005245 687 VCAECGRRMEEF 698 (706)
Q Consensus 687 ~CpeC~R~ME~~ 698 (706)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999986
No 241
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.81 E-value=69 Score=30.25 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=26.8
Q ss_pred HHHHHhhhhcCCCC-Cccc--eecCCCCCCCCceeecCCCCccccee-eeec
Q 005245 655 VAMNDYLNENRTPY-HCNR--LILPGEAGRIPEKVVCAECGRRMEEF-IMYR 702 (706)
Q Consensus 655 ~Af~ey~~~~~~~~-~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-i~Yk 702 (706)
.||+.+|+-+...- .|.. +.+- .+|....|.+||...+.. ..|.
T Consensus 42 e~L~faf~~~~~~T~~~ega~L~Ie----~vp~~~~C~~Cg~~~~~~~~~~~ 89 (117)
T PRK00564 42 SLFVSAFETFREESLVCKDAILDIV----DEKVELECKDCSHVFKPNALDYG 89 (117)
T ss_pred HHHHHHHHHHhcCCcccCCCEEEEE----ecCCEEEhhhCCCccccCCccCC
Confidence 35555555544433 3544 3332 488889999999887775 4554
No 242
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.59 E-value=32 Score=27.88 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=5.1
Q ss_pred ecCCCCcccc
Q 005245 687 VCAECGRRME 696 (706)
Q Consensus 687 ~CpeC~R~ME 696 (706)
.||-|||++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6888999985
No 243
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=23.37 E-value=7.7e+02 Score=24.82 Aligned_cols=101 Identities=10% Similarity=0.160 Sum_probs=52.2
Q ss_pred EEEEEEecCCCChhHHH-HHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCC---ceeeccCCC
Q 005245 348 SVLLLVSDLDVSNEELF-LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMP---WFSVHHPSA 423 (706)
Q Consensus 348 ~VlL~fSal~~~~~e~~-~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MP---WyAVpf~~~ 423 (706)
.|-+.+-+.... ..+. .|..+.+.++ ...+||||.| -|.| +|.-.+-.+++...-| ..-++.+..
T Consensus 10 ~vsVvIp~yne~-~~l~~~l~~l~~~~~-----~~~~~eiivv--DdgS---~D~t~~i~~~~~~~~~~~~v~~~~~~~n 78 (243)
T PLN02726 10 KYSIIVPTYNER-LNIALIVYLIFKALQ-----DVKDFEIIVV--DDGS---PDGTQDVVKQLQKVYGEDRILLRPRPGK 78 (243)
T ss_pred eEEEEEccCCch-hhHHHHHHHHHHHhc-----cCCCeEEEEE--eCCC---CCCHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 355555555432 2232 3444444443 1237999988 2443 4544555555443332 333444432
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHH
Q 005245 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMM 462 (706)
Q Consensus 424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI 462 (706)
.- .-..+..-+..-.-+.++++|+|+. ..++.++-+
T Consensus 79 ~G--~~~a~n~g~~~a~g~~i~~lD~D~~-~~~~~l~~l 114 (243)
T PLN02726 79 LG--LGTAYIHGLKHASGDFVVIMDADLS-HHPKYLPSF 114 (243)
T ss_pred CC--HHHHHHHHHHHcCCCEEEEEcCCCC-CCHHHHHHH
Confidence 21 1223333344445589999999997 477776543
No 244
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=23.32 E-value=59 Score=25.53 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q 005245 685 KVVCAECGRRME 696 (706)
Q Consensus 685 ~i~CpeC~R~ME 696 (706)
.+.||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 689999998765
No 245
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.07 E-value=7.9e+02 Score=28.78 Aligned_cols=160 Identities=10% Similarity=0.041 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCC
Q 005245 359 SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDF 438 (706)
Q Consensus 359 ~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~ 438 (706)
.++....|.+++++|+ +..++++. +|.+.+.+++-++--+++.+-=|.+.+.+-+. ..-+.+.+.+++
T Consensus 350 ~~~~~~~l~~~~~~l~-------~~v~l~~~--~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~---~~~~~~~~~~~v 417 (555)
T TIGR03143 350 DDSLRQQLVGIFGRLE-------NPVTLLLF--LDGSNEKSAELQSFLGEFASLSEKLNSEAVNR---GEEPESETLPKI 417 (555)
T ss_pred CHHHHHHHHHHHHhcC-------CCEEEEEE--ECCCchhhHHHHHHHHHHHhcCCcEEEEEecc---ccchhhHhhcCC
Confidence 4455568999998875 35777544 23333344444555566666558888866331 223455678899
Q ss_pred CCCcEEEEECCCCceecccHHHHHHHhCc-ccccCChhhHHHhhhhcccccccccccCCCCcc----cccc--Cce-EEE
Q 005245 439 RKKPILVVLDPQGRVVNQNALHMMWIWGS-VAFPFSVAREEALWKEETWRIDLLADSVDPVIP----TWIM--EQK-HIC 510 (706)
Q Consensus 439 ~~iP~LVvL~pqGkv~~~nA~~mI~~wG~-~AFPFT~~r~eeL~~~e~w~lelLvd~id~~I~----~~i~--egK-~I~ 510 (706)
+..|.+++++.+|+-.+ |.=+|+ -++-|++-=+.=+ .+++-.+.++ +.|+ +++ .|=
T Consensus 418 ~~~P~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~i~~i~----------~~~~~~~~l~~~~~~~i~~~~~~~~i~ 481 (555)
T TIGR03143 418 TKLPTVALLDDDGNYTG------LKFHGVPSGHELNSFILALY----------NAAGPGQPLGEELLEKIKKITKPVNIK 481 (555)
T ss_pred CcCCEEEEEeCCCcccc------eEEEecCccHhHHHHHHHHH----------HhcCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 99999999986664211 344553 4577743211111 1233333332 2222 344 577
Q ss_pred EEccCChhHHHHHHHHHHHHHHHh-CCceeEEEeccC
Q 005245 511 LYGGEDLEWVRKFTALMGAVARAA-GIALEMLYVGKS 546 (706)
Q Consensus 511 LYgg~d~~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkd 546 (706)
+|-|..=.+|.+=..++.+++... ++..||+-+..-
T Consensus 482 v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 482 IGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 777776677876667777777765 788998887654
No 246
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.76 E-value=1.3e+02 Score=26.41 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=36.1
Q ss_pred CChhhHHHhhhhcccccccccccCCCCc---ccccc--CceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEE
Q 005245 472 FSVAREEALWKEETWRIDLLADSVDPVI---PTWIM--EQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEML 541 (706)
Q Consensus 472 FT~~r~eeL~~~e~w~lelLvd~id~~I---~~~i~--egK~I~LYgg~d~~Wir~FT~~l~~I~~~~~~~~E~v 541 (706)
+|.+...+..+...- .+. .. +.| .+|+. .||..|||-+.|.+ ++++.++++|.+.+-+
T Consensus 12 it~e~l~~~~~~~~~---~~~-~~-~~V~w~~s~v~~d~~k~~Cly~Ap~~e-------aV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 12 ITAEDLAAAHAKSCA---VQA-EM-PGVQWLRSYVSEDDGKIFCLYEAPDEE-------AVREHARRAGLPADRI 74 (77)
T ss_pred CCHHHHHHHHHHhHH---HHh-hc-CCeEEEEEEEecCCCeEEEEEECCCHH-------HHHHHHHHcCCCcceE
Confidence 566666555554322 222 22 344 36777 99999999999754 5667777777776543
No 247
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=22.75 E-value=3e+02 Score=30.38 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=55.9
Q ss_pred ecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh-hhHHHHH-HhhcC----CCcee
Q 005245 344 LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE-AKEHKFE-ALQYM----MPWFS 417 (706)
Q Consensus 344 L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D-~de~~Fe-~~~~~----MPWyA 417 (706)
+-+..+.|+=...+........+.++++.|+......|..|||+-+|.-+....... .--.++= .|..+ ||=|
T Consensus 207 Fv~~~~vl~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~p~~~~~~~~~~~~~sY~Nfli~n~~VivP~f- 285 (329)
T PF04371_consen 207 FVDPGTVLVSRCDDPSDPNYERLEENLEILSAATDADGRPFEIVELPLPDPPYDEDGERLPASYVNFLITNGAVIVPVF- 285 (329)
T ss_dssp EEETTEEEEEE-S-TTSTTHHHHHHHHHHHHT-B-TTSSB-EEEEEEB-SS-BETTTEEE--BTT--EEETTEEEEEE--
T ss_pred ecCCCEEEEEecCCCCCcCHHHHHHHHHHHHhhhccCCCeeEEEEecCCCcccccCCcCccceeeeeEEECCEEEEccC-
Confidence 444444444444443333456799999999876556778999999998431000000 0011111 11111 2333
Q ss_pred eccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhC
Q 005245 418 VHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWG 466 (706)
Q Consensus 418 Vpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG 466 (706)
.+.-|.++.+.|++.| |+-+|+--|+..+++.-|
T Consensus 286 ---g~~~D~~Al~~l~~~f------------P~r~Vv~i~~~~l~~~GG 319 (329)
T PF04371_consen 286 ---GDPADEAALEILQEAF------------PDRKVVGIDARELIEGGG 319 (329)
T ss_dssp ---SSTTHHHHHHHHHHHS------------TTSEEEEEETHHHHTTT-
T ss_pred ---CChHHHHHHHHHHHHC------------CCCEEEEEeHHHHHhCCC
Confidence 3334788999999988 556666667777666444
No 248
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=22.67 E-value=1.6e+02 Score=28.95 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=36.9
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhh
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEK 551 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~ 551 (706)
++|-|.+-||+++ ..|+...+.+.+++++.+....++-|.-|...+-
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dl 69 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDF 69 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHH
Confidence 6789999999943 3359999999999988666688888888854443
No 249
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=2e+02 Score=26.05 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHHHH
Q 005245 350 LLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVI 429 (706)
Q Consensus 350 lL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~ 429 (706)
-||+|.+ | |+-.+.+ +.|. |.+-+||-|=|- -+-..-+.|-.++.+||= | + +.
T Consensus 5 ~lfgsn~-C-pdca~a~----eyl~----rl~v~yd~VeIt-------~Sm~NlKrFl~lRDs~~~----F-d--~v--- 57 (85)
T COG4545 5 KLFGSNL-C-PDCAPAV----EYLE----RLNVDYDFVEIT-------ESMANLKRFLHLRDSRPE----F-D--EV--- 57 (85)
T ss_pred eeecccc-C-cchHHHH----HHHH----HcCCCceeeehh-------hhhhhHHHHHhhhccchh----H-H--hh---
Confidence 4666655 4 4433333 3444 356789987762 246788999999999983 3 2 11
Q ss_pred HHHHHhhCCCCCcEEEEECCCCceecc
Q 005245 430 RYAKEKWDFRKKPILVVLDPQGRVVNQ 456 (706)
Q Consensus 430 r~ike~~~~~~iP~LVvL~pqGkv~~~ 456 (706)
+.+++-|||.|.+ +||+++--
T Consensus 58 ----k~~gyiGIPall~--~d~~vVl~ 78 (85)
T COG4545 58 ----KSNGYIGIPALLT--DDGKVVLG 78 (85)
T ss_pred ----hhcCcccceEEEe--CCCcEEEe
Confidence 2347779998754 78888754
No 250
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=22.12 E-value=78 Score=28.28 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=32.5
Q ss_pred ccccCCCChHHHHHHHHhcchhhhhccccCChhhhhhhHHHHHHHHHhhhhhhc
Q 005245 151 VAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEV 204 (706)
Q Consensus 151 L~q~~~~n~LakSlA~Lkqvp~i~~~~~~~k~~~~~ln~Lvk~m~~V~~cIie~ 204 (706)
||-+..+||++---.+|+|+. ...|||..++|.+|....+
T Consensus 1 laKlshsnP~~vf~~il~Qie--------------~YdNli~~vVe~~ky~t~l 40 (77)
T PF11732_consen 1 LAKLSHSNPLIVFDVILSQIE--------------SYDNLIEPVVESLKYFTDL 40 (77)
T ss_pred CchhhccCcHHHHHHHHHHHH--------------HhhhhHHHHHHHHhhcchh
Confidence 345667899999999999997 7888999999988876554
No 251
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.81 E-value=43 Score=26.84 Aligned_cols=14 Identities=36% Similarity=1.077 Sum_probs=10.5
Q ss_pred CCceeecCCCCcccc
Q 005245 682 IPEKVVCAECGRRME 696 (706)
Q Consensus 682 ip~~i~CpeC~R~ME 696 (706)
+|. -.||-|||||.
T Consensus 6 lp~-K~C~~C~rpf~ 19 (42)
T PF10013_consen 6 LPS-KICPVCGRPFT 19 (42)
T ss_pred CCC-CcCcccCCcch
Confidence 344 46999999984
No 252
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=20.81 E-value=1.9e+02 Score=28.53 Aligned_cols=45 Identities=4% Similarity=-0.114 Sum_probs=34.3
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeEEEeccCCch
Q 005245 505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG-IALEMLYVGKSNPK 549 (706)
Q Consensus 505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~-~~~E~v~Vgkdn~~ 549 (706)
.++.+.++|.+.+ ..|+++.+.+.+++++.+ ..+.++.|.-|+..
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 4678999999942 336999999999988643 46888888877543
No 253
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=20.75 E-value=68 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=17.5
Q ss_pred CceeecCCCCcccceeeeec
Q 005245 683 PEKVVCAECGRRMEEFIMYR 702 (706)
Q Consensus 683 p~~i~CpeC~R~ME~~i~Yk 702 (706)
|..+.||.|+..+..-|.|+
T Consensus 1 p~~i~Cp~C~~~~~T~v~~~ 20 (67)
T smart00714 1 PYQLFCPRCQNNVTTRVETE 20 (67)
T ss_pred CcceECCCCCCEEEEEEEEE
Confidence 67899999999999888875
No 254
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=20.72 E-value=6.6e+02 Score=24.55 Aligned_cols=90 Identities=8% Similarity=0.033 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEE
Q 005245 365 LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPIL 444 (706)
Q Consensus 365 ~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~L 444 (706)
.|.+..+.+++.. ..+.+||||-| .|. .+|...+..+.+....|+.-+..... ......+..-++.-+-+.+
T Consensus 14 ~l~~~l~sl~~q~-~~~~~~evivv--d~~---s~d~~~~~~~~~~~~~~~v~~i~~~~--~~~~~a~N~g~~~a~~d~v 85 (249)
T cd02525 14 YIEELLESLLNQS-YPKDLIEIIVV--DGG---STDGTREIVQEYAAKDPRIRLIDNPK--RIQSAGLNIGIRNSRGDII 85 (249)
T ss_pred hHHHHHHHHHhcc-CCCCccEEEEE--eCC---CCccHHHHHHHHHhcCCeEEEEeCCC--CCchHHHHHHHHHhCCCEE
Confidence 3445555554321 12368999966 233 24666777778887788777765331 1122223333333356899
Q ss_pred EEECCCCceecccHHHHHH
Q 005245 445 VVLDPQGRVVNQNALHMMW 463 (706)
Q Consensus 445 VvL~pqGkv~~~nA~~mI~ 463 (706)
+++|+|.. +.++.++-+-
T Consensus 86 ~~lD~D~~-~~~~~l~~~~ 103 (249)
T cd02525 86 IRVDAHAV-YPKDYILELV 103 (249)
T ss_pred EEECCCcc-CCHHHHHHHH
Confidence 99999986 4677666544
No 255
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.68 E-value=44 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=19.4
Q ss_pred eeecCCCCcccceeeeecccCC
Q 005245 685 KVVCAECGRRMEEFIMYRCCTD 706 (706)
Q Consensus 685 ~i~CpeC~R~ME~~i~YkCCh~ 706 (706)
.-+||.|+||.|-.-.|-||-+
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (1006)
T PRK12775 796 VATCPKCHRPLEGDEEYVCCAT 817 (1006)
T ss_pred CccCcccCCCCCCCceeEEecC
Confidence 3589999999999999999964
No 256
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=20.38 E-value=2.7e+02 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245 351 LLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPI 391 (706)
Q Consensus 351 L~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwIpi 391 (706)
..||..|||.|..- .|.++..+. .++++.+|.+
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~--------~~i~~~~idi 38 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEER--------DDFDYRYVDI 38 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccc--------cCCcEEEEEC
Confidence 57899999998763 355444332 2455556655
No 257
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.36 E-value=2.1e+02 Score=26.12 Aligned_cols=45 Identities=13% Similarity=0.342 Sum_probs=30.3
Q ss_pred CceEEEEEccC-ChhHHHHHHHHHHHHHHHh-CCceeEEEeccCCch
Q 005245 505 EQKHICLYGGE-DLEWVRKFTALMGAVARAA-GIALEMLYVGKSNPK 549 (706)
Q Consensus 505 egK~I~LYgg~-d~~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~ 549 (706)
.++.|.+++-+ .-.-|+.-.+.+.+++++. +..++++.|+.|++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 45676776655 2233477777777776653 457999999988653
No 258
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=20.22 E-value=2e+02 Score=26.61 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=31.7
Q ss_pred CceEEEEEccC--ChhHHHHHHHHHHHHHHH-hCCceeEEEeccCCch
Q 005245 505 EQKHICLYGGE--DLEWVRKFTALMGAVARA-AGIALEMLYVGKSNPK 549 (706)
Q Consensus 505 egK~I~LYgg~--d~~Wir~FT~~l~~I~~~-~~~~~E~v~Vgkdn~~ 549 (706)
.||.+.|+|=+ .=..|+.=.+.+.++++. .+..++++.|+.++..
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~ 74 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDP 74 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCH
Confidence 78877666644 224457777788888665 5677999999888543
No 259
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.11 E-value=57 Score=24.77 Aligned_cols=20 Identities=35% Similarity=0.787 Sum_probs=13.2
Q ss_pred eecCCCCCCCCce---eecCCCCcc
Q 005245 673 LILPGEAGRIPEK---VVCAECGRR 694 (706)
Q Consensus 673 ~~~p~~~g~ip~~---i~CpeC~R~ 694 (706)
+.+| ...||+. +.|+.||..
T Consensus 12 y~i~--d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 12 YEID--DEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EeCC--HHHCCCCCcEEECCCCCCE
Confidence 5555 3445554 999999864
No 260
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.06 E-value=35 Score=28.81 Aligned_cols=14 Identities=36% Similarity=0.708 Sum_probs=8.1
Q ss_pred ceeecCCCCcccce
Q 005245 684 EKVVCAECGRRMEE 697 (706)
Q Consensus 684 ~~i~CpeC~R~ME~ 697 (706)
.++.||.||++-+.
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999999877
Done!