Query 005248
Match_columns 706
No_of_seqs 385 out of 1257
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 20:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02925 4-hydroxy-3-methylbut 100.0 1E-200 3E-205 1649.8 60.0 698 1-706 1-698 (733)
2 PRK02048 4-hydroxy-3-methylbut 100.0 9E-186 2E-190 1516.2 53.6 579 79-706 2-582 (611)
3 PRK00694 4-hydroxy-3-methylbut 100.0 4E-184 8E-189 1494.2 52.5 570 76-706 3-574 (606)
4 PF04551 GcpE: GcpE protein; 100.0 1E-135 3E-140 1067.6 28.3 332 88-706 1-333 (359)
5 TIGR00612 ispG_gcpE 1-hydroxy- 100.0 2E-131 3E-136 1030.2 36.5 321 85-706 1-324 (346)
6 COG0821 gcpE 1-hydroxy-2-methy 100.0 9E-130 2E-134 1013.3 36.2 323 83-706 1-326 (361)
7 PRK00366 ispG 4-hydroxy-3-meth 100.0 6E-125 1E-129 986.9 37.0 246 80-356 4-251 (360)
8 PRK00694 4-hydroxy-3-methylbut 99.8 4.4E-19 9.5E-24 196.9 9.5 85 550-638 207-296 (606)
9 TIGR00612 ispG_gcpE 1-hydroxy- 99.8 1.4E-18 2.9E-23 183.6 8.9 70 550-622 171-240 (346)
10 PRK00366 ispG 4-hydroxy-3-meth 99.8 1E-18 2.3E-23 185.6 7.3 152 550-706 180-332 (360)
11 PRK02048 4-hydroxy-3-methylbut 99.7 2.6E-18 5.7E-23 191.9 10.6 96 538-639 198-293 (611)
12 COG0821 gcpE 1-hydroxy-2-methy 99.7 4E-18 8.7E-23 179.6 6.7 115 550-673 173-289 (361)
13 PF04551 GcpE: GcpE protein; 99.6 1.4E-16 2.9E-21 169.7 5.7 67 550-619 180-246 (359)
14 PLN02925 4-hydroxy-3-methylbut 99.6 3.4E-15 7.4E-20 169.1 10.0 90 538-633 267-356 (733)
15 PRK04165 acetyl-CoA decarbonyl 98.4 1.6E-05 3.6E-10 88.5 19.8 218 78-345 51-297 (450)
16 cd00739 DHPS DHPS subgroup of 97.6 0.0057 1.2E-07 63.8 19.0 195 114-345 20-244 (257)
17 TIGR01496 DHPS dihydropteroate 97.4 0.0088 1.9E-07 62.3 17.9 202 115-362 20-252 (257)
18 TIGR00284 dihydropteroate synt 97.3 0.033 7.2E-07 63.5 22.2 228 90-367 137-377 (499)
19 cd00423 Pterin_binding Pterin 97.2 0.041 8.8E-07 57.0 19.7 209 115-359 21-255 (258)
20 PRK04452 acetyl-CoA decarbonyl 97.0 0.048 1E-06 59.1 18.3 179 87-314 13-249 (319)
21 TIGR00381 cdhD CO dehydrogenas 96.9 0.047 1E-06 60.5 17.8 192 87-325 74-325 (389)
22 PRK07535 methyltetrahydrofolat 96.8 0.073 1.6E-06 55.8 17.4 169 115-321 22-204 (261)
23 TIGR02435 CobG precorrin-3B sy 96.5 0.01 2.3E-07 64.8 9.3 83 616-700 300-389 (390)
24 PRK13504 sulfite reductase sub 96.4 0.011 2.4E-07 67.8 8.8 98 607-706 385-505 (569)
25 PRK13398 3-deoxy-7-phosphohept 96.1 0.29 6.4E-06 51.7 17.1 149 86-280 11-168 (266)
26 PRK11613 folP dihydropteroate 96.1 0.49 1.1E-05 50.6 18.6 206 115-362 35-267 (282)
27 TIGR02435 CobG precorrin-3B sy 95.9 0.026 5.5E-07 61.8 8.5 75 626-701 69-159 (390)
28 TIGR02374 nitri_red_nirB nitri 95.9 0.026 5.5E-07 67.0 8.9 89 614-705 595-693 (785)
29 PRK14989 nitrite reductase sub 95.9 0.031 6.6E-07 67.2 9.5 115 585-706 574-706 (847)
30 PLN00178 sulfite reductase 95.9 0.034 7.3E-07 64.9 9.5 98 607-706 433-554 (623)
31 TIGR02042 sir ferredoxin-sulfi 95.9 0.037 8E-07 63.9 9.8 98 607-706 395-515 (577)
32 TIGR02082 metH 5-methyltetrahy 95.7 0.47 1E-05 59.4 19.1 211 115-361 365-607 (1178)
33 PRK12595 bifunctional 3-deoxy- 95.6 0.5 1.1E-05 52.0 16.9 177 86-316 102-297 (360)
34 PRK08673 3-deoxy-7-phosphohept 95.6 0.42 9.1E-06 52.3 16.0 145 87-280 78-234 (335)
35 COG0155 CysI Sulfite reductase 95.5 0.037 7.9E-07 63.3 7.8 96 608-705 336-449 (510)
36 PF00809 Pterin_bind: Pterin b 95.5 0.25 5.5E-06 49.9 12.9 168 116-313 17-203 (210)
37 TIGR01361 DAHP_synth_Bsub phos 95.3 0.85 1.8E-05 48.0 16.7 163 88-299 11-192 (260)
38 PRK09490 metH B12-dependent me 95.3 0.4 8.7E-06 60.1 16.5 211 115-361 381-623 (1229)
39 PRK09566 nirA ferredoxin-nitri 95.2 0.062 1.4E-06 61.0 8.4 79 617-697 111-209 (513)
40 TIGR02912 sulfite_red_C sulfit 95.0 0.059 1.3E-06 57.3 7.3 60 641-701 102-165 (314)
41 PRK13753 dihydropteroate synth 94.9 2.8 6E-05 45.1 19.3 199 115-345 22-248 (279)
42 PRK02412 aroD 3-dehydroquinate 94.9 2.2 4.8E-05 44.5 18.2 195 90-325 3-212 (253)
43 PF01077 NIR_SIR: Nitrite and 94.7 0.05 1.1E-06 51.7 5.1 58 641-699 7-74 (157)
44 cd07939 DRE_TIM_NifV Streptomy 94.6 2.6 5.6E-05 43.7 17.8 143 114-285 16-162 (259)
45 TIGR02041 CysI sulfite reducta 94.5 0.079 1.7E-06 60.6 7.0 96 608-705 370-487 (541)
46 cd07948 DRE_TIM_HCS Saccharomy 94.4 2.1 4.6E-05 45.0 16.7 149 115-299 19-182 (262)
47 COG2221 DsrA Dissimilatory sul 94.2 0.34 7.4E-06 52.7 10.5 115 578-698 33-165 (317)
48 cd00740 MeTr MeTr subgroup of 94.0 3 6.5E-05 43.8 16.9 164 115-314 23-205 (252)
49 PRK07028 bifunctional hexulose 93.9 1.2 2.7E-05 49.3 14.5 153 111-315 9-173 (430)
50 cd07940 DRE_TIM_IPMS 2-isoprop 93.8 3.9 8.4E-05 42.6 17.2 156 115-299 17-184 (268)
51 cd03174 DRE_TIM_metallolyase D 93.7 5.2 0.00011 40.5 17.4 161 113-299 14-187 (265)
52 PF00682 HMGL-like: HMGL-like 93.6 0.98 2.1E-05 45.5 12.1 155 116-299 12-178 (237)
53 cd00958 DhnA Class I fructose- 93.6 1.7 3.7E-05 43.8 13.9 143 114-297 72-234 (235)
54 TIGR00542 hxl6Piso_put hexulos 93.5 10 0.00022 39.1 20.4 211 101-346 2-249 (279)
55 TIGR01302 IMP_dehydrog inosine 93.4 0.6 1.3E-05 52.4 11.2 102 118-234 223-330 (450)
56 TIGR02066 dsrB sulfite reducta 93.3 0.11 2.4E-06 56.5 5.2 79 617-697 74-168 (341)
57 cd07943 DRE_TIM_HOA 4-hydroxy- 93.3 6.6 0.00014 40.8 17.9 147 113-299 17-182 (263)
58 PRK09567 nirA ferredoxin-nitri 93.2 0.3 6.5E-06 56.8 8.6 95 602-698 397-509 (593)
59 PRK15129 L-Ala-D/L-Glu epimera 93.1 1.3 2.8E-05 47.3 12.6 138 98-240 111-277 (321)
60 PF01261 AP_endonuc_2: Xylose 93.1 1 2.2E-05 42.7 10.6 154 125-299 2-185 (213)
61 PRK00979 tetrahydromethanopter 92.8 16 0.00036 40.0 20.3 184 86-314 6-227 (308)
62 PRK04180 pyridoxal biosynthesi 92.7 2.2 4.9E-05 46.2 13.7 159 121-310 86-262 (293)
63 PRK13396 3-deoxy-7-phosphohept 92.6 6.3 0.00014 43.7 17.1 177 87-317 81-282 (352)
64 PRK13210 putative L-xylulose 5 92.3 3.4 7.3E-05 42.2 13.9 146 106-281 7-181 (284)
65 PTZ00314 inosine-5'-monophosph 92.3 1.1 2.4E-05 51.2 11.4 101 119-235 241-348 (495)
66 PRK09566 nirA ferredoxin-nitri 92.1 0.38 8.2E-06 54.8 7.5 95 602-697 344-455 (513)
67 TIGR02631 xylA_Arthro xylose i 91.8 1.5 3.3E-05 48.5 11.5 153 113-281 27-214 (382)
68 COG1410 MetH Methionine syntha 91.7 5.1 0.00011 48.3 15.9 218 115-366 51-291 (842)
69 TIGR01502 B_methylAsp_ase meth 91.5 1.4 3.1E-05 49.3 11.0 107 115-244 245-363 (408)
70 TIGR02064 dsrA sulfite reducta 91.4 0.43 9.2E-06 53.4 6.8 80 618-699 129-224 (402)
71 PLN02431 ferredoxin--nitrite r 91.3 0.69 1.5E-05 53.9 8.5 56 641-697 467-529 (587)
72 TIGR03234 OH-pyruv-isom hydrox 91.2 4.3 9.4E-05 41.1 13.2 146 115-288 14-183 (254)
73 TIGR02090 LEU1_arch isopropylm 91.2 10 0.00022 41.7 16.8 156 115-299 19-182 (363)
74 cd00452 KDPG_aldolase KDPG and 90.8 3 6.5E-05 41.3 11.3 90 116-239 14-105 (190)
75 PLN02746 hydroxymethylglutaryl 90.6 13 0.00029 41.1 17.0 159 115-299 65-238 (347)
76 PRK11858 aksA trans-homoaconit 90.4 12 0.00026 41.3 16.7 159 114-299 22-186 (378)
77 PRK09997 hydroxypyruvate isome 90.3 23 0.00049 36.3 17.5 199 124-359 21-252 (258)
78 PRK13504 sulfite reductase sub 90.2 1.2 2.5E-05 51.6 9.0 80 616-697 119-238 (569)
79 cd03316 MR_like Mandelate race 89.7 2.1 4.5E-05 45.8 9.8 112 98-240 186-300 (357)
80 cd07941 DRE_TIM_LeuA3 Desulfob 89.6 17 0.00037 38.2 16.3 160 114-299 16-192 (273)
81 cd03315 MLE_like Muconate lact 89.3 3.4 7.5E-05 42.5 10.8 110 98-238 126-238 (265)
82 cd00502 DHQase_I Type I 3-dehy 89.2 1.9 4.2E-05 43.6 8.7 66 100-166 112-179 (225)
83 PRK13209 L-xylulose 5-phosphat 89.1 4.3 9.4E-05 41.6 11.3 141 121-287 24-192 (283)
84 cd04727 pdxS PdxS is a subunit 88.7 15 0.00033 39.8 15.3 166 121-320 77-261 (283)
85 cd07944 DRE_TIM_HOA_like 4-hyd 88.7 14 0.0003 39.0 14.8 146 115-299 17-179 (266)
86 TIGR02660 nifV_homocitr homoci 88.5 42 0.00091 36.9 18.9 156 115-299 20-183 (365)
87 PLN02431 ferredoxin--nitrite r 88.3 1.6 3.4E-05 51.1 8.4 81 616-698 181-281 (587)
88 cd00019 AP2Ec AP endonuclease 88.2 7.5 0.00016 40.0 12.3 142 120-285 12-179 (279)
89 PRK13397 3-deoxy-7-phosphohept 88.1 40 0.00087 36.0 19.4 168 89-316 4-194 (250)
90 PRK12457 2-dehydro-3-deoxyphos 88.0 5.8 0.00012 42.9 11.6 137 94-279 7-163 (281)
91 PRK09856 fructoselysine 3-epim 87.6 34 0.00074 34.9 16.6 142 120-285 15-184 (275)
92 PRK02412 aroD 3-dehydroquinate 87.6 2.7 5.9E-05 43.8 8.8 64 102-166 136-202 (253)
93 cd00381 IMPDH IMPDH: The catal 87.4 8.5 0.00018 41.7 12.7 102 118-234 93-200 (325)
94 cd04729 NanE N-acetylmannosami 87.3 12 0.00025 37.8 12.9 108 101-238 10-130 (219)
95 PRK13523 NADPH dehydrogenase N 87.3 21 0.00046 39.0 15.7 202 90-307 6-243 (337)
96 cd04734 OYE_like_3_FMN Old yel 87.2 26 0.00057 38.2 16.3 184 90-285 4-217 (343)
97 TIGR01093 aroD 3-dehydroquinat 86.9 39 0.00085 34.6 16.7 167 115-325 9-194 (228)
98 TIGR01093 aroD 3-dehydroquinat 86.8 3.3 7.1E-05 42.3 8.7 54 112-166 129-184 (228)
99 PRK06843 inosine 5-monophospha 86.0 6.6 0.00014 44.3 11.3 69 118-191 152-227 (404)
100 PRK09989 hypothetical protein; 85.9 7.5 0.00016 39.7 10.8 137 122-283 19-179 (258)
101 cd04733 OYE_like_2_FMN Old yel 85.6 24 0.00053 38.1 14.9 183 90-284 4-224 (338)
102 PF04131 NanE: Putative N-acet 85.4 1.2 2.6E-05 45.7 4.7 136 118-294 51-187 (192)
103 cd07947 DRE_TIM_Re_CS Clostrid 85.3 58 0.0012 34.9 17.6 145 116-284 19-172 (279)
104 PLN02274 inosine-5'-monophosph 85.1 5.5 0.00012 45.9 10.3 70 119-194 248-325 (505)
105 cd00945 Aldolase_Class_I Class 84.9 21 0.00045 34.0 12.6 130 116-281 11-150 (201)
106 cd07938 DRE_TIM_HMGL 3-hydroxy 84.4 18 0.0004 38.3 13.1 159 114-299 16-190 (274)
107 cd03316 MR_like Mandelate race 84.1 53 0.0011 35.3 16.6 67 116-185 139-215 (357)
108 cd04747 OYE_like_5_FMN Old yel 83.3 37 0.0008 37.7 15.3 212 90-311 4-254 (361)
109 PRK09389 (R)-citramalate synth 83.2 81 0.0018 36.4 18.4 157 114-299 20-184 (488)
110 TIGR00343 pyridoxal 5'-phospha 82.7 34 0.00073 37.3 14.3 154 121-311 79-257 (287)
111 cd03319 L-Ala-DL-Glu_epimerase 82.6 9 0.0002 40.5 10.0 92 118-237 191-285 (316)
112 cd02932 OYE_YqiM_FMN Old yello 82.3 60 0.0013 35.0 16.2 186 90-284 4-229 (336)
113 PRK13111 trpA tryptophan synth 82.2 73 0.0016 33.8 16.5 106 116-246 24-157 (258)
114 PF03599 CdhD: CO dehydrogenas 81.4 15 0.00033 41.4 11.5 150 117-316 45-218 (386)
115 PRK05198 2-dehydro-3-deoxyphos 81.3 6.4 0.00014 42.2 8.3 136 95-279 2-157 (264)
116 PRK01261 aroD 3-dehydroquinate 81.3 6.3 0.00014 41.1 8.1 76 89-169 7-84 (229)
117 cd00945 Aldolase_Class_I Class 80.6 42 0.00092 31.9 12.9 89 101-192 48-153 (201)
118 cd02930 DCR_FMN 2,4-dienoyl-Co 80.5 48 0.001 36.1 14.8 181 90-285 4-213 (353)
119 TIGR03128 RuMP_HxlA 3-hexulose 80.5 44 0.00096 33.0 13.4 65 123-193 68-138 (206)
120 PRK09249 coproporphyrinogen II 80.2 30 0.00066 38.9 13.6 137 115-297 81-228 (453)
121 PF00478 IMPDH: IMP dehydrogen 80.2 12 0.00025 41.7 10.1 92 120-234 109-214 (352)
122 PF01487 DHquinase_I: Type I 3 80.2 6.3 0.00014 39.8 7.5 66 100-166 112-179 (224)
123 PRK12344 putative alpha-isopro 80.0 87 0.0019 36.5 17.4 160 114-299 23-199 (524)
124 PRK07807 inosine 5-monophospha 80.0 3.3 7.2E-05 47.4 6.1 65 119-186 277-357 (479)
125 PRK09567 nirA ferredoxin-nitri 79.6 6.3 0.00014 46.2 8.3 80 616-697 160-255 (593)
126 PRK09722 allulose-6-phosphate 79.2 84 0.0018 33.0 15.5 152 102-299 60-221 (229)
127 PRK12677 xylose isomerase; Pro 79.1 15 0.00032 40.9 10.6 151 112-280 28-212 (384)
128 KOG2367 Alpha-isopropylmalate 79.0 29 0.00063 40.4 12.9 133 113-296 74-210 (560)
129 PRK07379 coproporphyrinogen II 79.0 35 0.00077 37.9 13.4 133 117-297 50-192 (400)
130 PRK06245 cofG FO synthase subu 78.9 69 0.0015 34.4 15.2 145 114-278 40-205 (336)
131 PRK01130 N-acetylmannosamine-6 78.7 77 0.0017 31.9 16.1 178 100-344 5-201 (221)
132 TIGR01928 menC_lowGC/arch o-su 78.7 29 0.00063 37.3 12.4 119 115-238 131-281 (324)
133 TIGR01182 eda Entner-Doudoroff 78.6 25 0.00055 36.2 11.3 113 115-281 17-129 (204)
134 PRK05799 coproporphyrinogen II 78.5 36 0.00079 37.0 13.1 136 116-298 35-177 (374)
135 PRK08255 salicylyl-CoA 5-hydro 78.5 47 0.001 40.0 15.1 188 90-285 402-627 (765)
136 TIGR03128 RuMP_HxlA 3-hexulose 78.4 16 0.00034 36.1 9.6 96 113-237 7-108 (206)
137 cd04727 pdxS PdxS is a subunit 78.2 8.7 0.00019 41.6 8.1 115 119-245 120-275 (283)
138 PRK05692 hydroxymethylglutaryl 78.2 69 0.0015 34.3 14.9 158 115-299 23-196 (287)
139 cd07945 DRE_TIM_CMS Leptospira 78.2 72 0.0016 34.1 15.0 159 115-298 16-187 (280)
140 PRK05096 guanosine 5'-monophos 77.7 4.9 0.00011 44.6 6.3 67 119-187 160-241 (346)
141 TIGR02041 CysI sulfite reducta 77.4 8.2 0.00018 44.6 8.3 81 616-698 105-223 (541)
142 cd04729 NanE N-acetylmannosami 77.1 5.5 0.00012 40.1 6.1 71 120-192 81-154 (219)
143 cd03319 L-Ala-DL-Glu_epimerase 76.9 41 0.00089 35.6 12.8 83 99-185 117-203 (316)
144 cd04722 TIM_phosphate_binding 76.7 17 0.00036 33.9 8.7 78 107-192 4-95 (200)
145 cd03321 mandelate_racemase Man 76.6 19 0.00041 39.0 10.3 84 98-185 124-212 (355)
146 cd03317 NAAAR N-acylamino acid 76.5 34 0.00074 36.8 12.2 54 117-174 138-191 (354)
147 PRK08446 coproporphyrinogen II 76.5 48 0.001 36.1 13.3 135 115-298 31-176 (350)
148 PRK09432 metF 5,10-methylenete 76.2 1.2E+02 0.0026 32.8 18.1 145 128-280 79-275 (296)
149 cd00308 enolase_like Enolase-s 76.1 25 0.00054 35.6 10.4 98 116-241 106-206 (229)
150 cd03321 mandelate_racemase Man 76.1 14 0.00031 39.9 9.3 106 98-234 183-291 (355)
151 TIGR00262 trpA tryptophan synt 75.9 1.1E+02 0.0024 32.3 16.8 106 116-246 22-155 (256)
152 TIGR00492 alr alanine racemase 75.9 58 0.0013 35.4 13.8 92 124-257 46-139 (367)
153 PRK08091 ribulose-phosphate 3- 75.6 25 0.00055 36.9 10.5 114 102-245 69-190 (228)
154 TIGR01303 IMP_DH_rel_1 IMP deh 75.6 12 0.00027 42.8 9.0 99 121-234 227-331 (475)
155 cd02931 ER_like_FMN Enoate red 75.5 75 0.0016 35.3 14.7 186 90-284 4-226 (382)
156 PRK05567 inosine 5'-monophosph 75.2 17 0.00036 41.5 9.8 67 120-190 229-301 (486)
157 PRK14017 galactonate dehydrata 74.8 15 0.00033 40.2 9.1 61 159-241 226-289 (382)
158 PF00478 IMPDH: IMP dehydrogen 74.7 6.2 0.00013 43.8 6.1 66 119-186 158-238 (352)
159 cd06556 ICL_KPHMT Members of t 74.3 79 0.0017 33.3 13.8 157 125-327 26-210 (240)
160 PF02126 PTE: Phosphotriestera 74.2 36 0.00078 37.0 11.6 149 116-299 36-206 (308)
161 PRK05718 keto-hydroxyglutarate 74.1 39 0.00084 34.9 11.3 112 114-279 23-134 (212)
162 COG1902 NemA NADH:flavin oxido 73.9 83 0.0018 35.2 14.5 201 90-304 9-250 (363)
163 TIGR01163 rpe ribulose-phospha 73.8 44 0.00095 32.7 11.2 95 115-239 8-112 (210)
164 PLN02274 inosine-5'-monophosph 73.8 7.2 0.00016 44.9 6.6 62 119-185 298-377 (505)
165 TIGR01305 GMP_reduct_1 guanosi 73.7 7.7 0.00017 43.0 6.5 68 119-188 159-241 (343)
166 TIGR01303 IMP_DH_rel_1 IMP deh 73.5 6.1 0.00013 45.2 5.9 56 119-176 275-345 (475)
167 PRK08208 coproporphyrinogen II 73.3 60 0.0013 36.4 13.4 138 116-298 72-219 (430)
168 cd06830 PLPDE_III_ADC Type III 72.8 48 0.001 36.9 12.4 111 122-274 99-223 (409)
169 PRK06552 keto-hydroxyglutarate 72.6 42 0.0009 34.7 11.1 114 115-279 22-135 (213)
170 PRK08745 ribulose-phosphate 3- 72.5 36 0.00078 35.4 10.7 113 101-245 62-182 (223)
171 PF02591 DUF164: Putative zinc 72.3 2.6 5.7E-05 34.4 2.0 13 640-652 44-56 (56)
172 PRK07114 keto-hydroxyglutarate 72.2 41 0.00089 35.1 11.1 117 114-280 23-139 (222)
173 PRK10605 N-ethylmaleimide redu 72.2 1.6E+02 0.0036 32.5 16.6 182 90-284 6-233 (362)
174 cd01137 PsaA Metal binding pro 72.0 18 0.00039 38.3 8.6 166 98-278 34-231 (287)
175 PF07476 MAAL_C: Methylasparta 71.9 17 0.00037 38.6 8.1 101 115-237 86-195 (248)
176 cd04724 Tryptophan_synthase_al 71.7 61 0.0013 33.7 12.2 105 115-245 11-143 (242)
177 cd03314 MAL Methylaspartate am 71.6 38 0.00082 37.8 11.2 117 98-238 189-319 (369)
178 cd03320 OSBS o-Succinylbenzoat 71.5 24 0.00051 36.6 9.2 59 160-240 175-236 (263)
179 PRK07107 inosine 5-monophospha 71.5 6.9 0.00015 45.1 5.8 68 119-186 293-379 (502)
180 PRK00208 thiG thiazole synthas 70.6 24 0.00051 37.8 9.0 113 100-229 90-229 (250)
181 TIGR00973 leuA_bact 2-isopropy 70.6 1.4E+02 0.003 34.6 15.8 147 114-284 19-168 (494)
182 PRK01130 N-acetylmannosamine-6 70.0 17 0.00036 36.7 7.5 71 120-192 77-150 (221)
183 PRK12653 fructose-6-phosphate 69.9 49 0.0011 34.5 11.0 79 98-186 50-129 (220)
184 PRK09875 putative hydrolase; P 69.7 1.7E+02 0.0037 31.7 15.8 191 111-345 27-241 (292)
185 PTZ00314 inosine-5'-monophosph 69.5 13 0.00027 42.8 7.3 66 120-187 292-372 (495)
186 cd03329 MR_like_4 Mandelate ra 69.4 21 0.00045 38.9 8.6 68 115-185 142-215 (368)
187 cd03323 D-glucarate_dehydratas 69.2 31 0.00066 38.4 10.0 68 144-238 249-319 (395)
188 PRK00915 2-isopropylmalate syn 68.6 2.3E+02 0.005 33.0 17.0 116 114-243 22-145 (513)
189 cd03325 D-galactonate_dehydrat 68.5 27 0.00058 37.9 9.2 97 116-239 158-286 (352)
190 cd04728 ThiG Thiazole synthase 68.5 42 0.0009 36.0 10.2 94 98-192 88-208 (248)
191 PF00793 DAHP_synth_1: DAHP sy 68.4 18 0.00038 38.7 7.6 131 90-264 2-153 (270)
192 PRK05105 O-succinylbenzoate sy 68.4 37 0.00081 36.6 10.2 60 159-240 207-267 (322)
193 PRK07107 inosine 5-monophospha 68.3 29 0.00062 40.2 9.8 69 119-190 242-316 (502)
194 PRK14057 epimerase; Provisiona 68.2 47 0.001 35.6 10.6 118 101-246 75-205 (254)
195 COG0800 Eda 2-keto-3-deoxy-6-p 68.2 45 0.00098 35.0 10.2 159 115-340 22-182 (211)
196 PF13913 zf-C2HC_2: zinc-finge 67.6 2 4.2E-05 30.4 0.3 12 641-652 1-12 (25)
197 PRK06843 inosine 5-monophospha 67.6 14 0.0003 41.8 6.9 67 119-187 203-284 (404)
198 cd03322 rpsA The starvation se 67.4 40 0.00086 36.8 10.2 111 98-239 160-273 (361)
199 PRK02227 hypothetical protein; 67.2 35 0.00075 36.3 9.3 122 108-246 56-192 (238)
200 cd00331 IGPS Indole-3-glycerol 67.2 98 0.0021 31.0 12.3 95 116-238 29-128 (217)
201 cd03313 enolase Enolase: Enola 67.1 20 0.00043 40.2 8.0 68 145-237 291-362 (408)
202 PRK14336 (dimethylallyl)adenos 67.0 1.2E+02 0.0025 34.2 13.9 133 113-298 151-302 (418)
203 cd07937 DRE_TIM_PC_TC_5S Pyruv 67.0 1.8E+02 0.0038 30.9 15.5 143 115-299 18-190 (275)
204 PTZ00081 enolase; Provisional 66.2 23 0.00051 40.3 8.4 80 142-246 308-391 (439)
205 cd03327 MR_like_2 Mandelate ra 65.9 37 0.0008 36.7 9.5 68 115-185 119-197 (341)
206 PRK06015 keto-hydroxyglutarate 65.9 76 0.0016 32.8 11.3 124 115-293 13-138 (201)
207 COG1579 Zn-ribbon protein, pos 65.8 2 4.2E-05 45.4 -0.0 16 639-654 218-233 (239)
208 PRK13347 coproporphyrinogen II 65.5 1.4E+02 0.003 33.9 14.2 136 116-298 83-230 (453)
209 cd04722 TIM_phosphate_binding 65.5 33 0.00072 31.9 8.1 88 101-195 57-150 (200)
210 PRK04180 pyridoxal biosynthesi 65.3 28 0.0006 38.1 8.4 115 119-245 129-284 (293)
211 cd00956 Transaldolase_FSA Tran 65.1 71 0.0015 32.8 10.9 112 101-238 51-162 (211)
212 TIGR03586 PseI pseudaminic aci 65.0 2.3E+02 0.0049 31.4 16.5 137 114-299 13-191 (327)
213 TIGR00510 lipA lipoate synthas 64.8 1.2E+02 0.0025 33.1 13.0 159 116-299 92-272 (302)
214 TIGR01302 IMP_dehydrog inosine 64.8 17 0.00037 41.1 7.1 65 120-187 275-355 (450)
215 COG0854 PdxJ Pyridoxal phospha 64.4 34 0.00073 36.4 8.5 83 144-241 109-192 (243)
216 cd03329 MR_like_4 Mandelate ra 64.3 79 0.0017 34.5 11.8 65 146-237 230-298 (368)
217 TIGR00538 hemN oxygen-independ 64.2 52 0.0011 37.1 10.6 72 223-298 153-229 (455)
218 PRK07094 biotin synthase; Prov 64.1 2E+02 0.0044 30.6 14.6 133 115-299 70-207 (323)
219 PRK07534 methionine synthase I 63.8 34 0.00074 37.5 8.9 83 117-242 130-214 (336)
220 TIGR01949 AroFGH_arch predicte 63.6 1.2E+02 0.0026 31.7 12.4 140 113-299 34-190 (258)
221 cd04731 HisF The cyclase subun 63.5 86 0.0019 32.0 11.2 169 119-336 28-214 (243)
222 PRK08207 coproporphyrinogen II 63.3 28 0.00062 40.0 8.5 73 223-298 271-347 (488)
223 cd03318 MLE Muconate Lactonizi 63.3 50 0.0011 35.8 10.0 66 145-237 228-296 (365)
224 PRK08883 ribulose-phosphate 3- 63.3 1.9E+02 0.0041 30.0 15.2 149 102-296 59-214 (220)
225 PRK13303 L-aspartate dehydroge 63.3 62 0.0013 34.0 10.4 125 173-350 76-211 (265)
226 TIGR01927 menC_gamma/gm+ o-suc 63.2 59 0.0013 34.9 10.4 59 159-239 204-265 (307)
227 PRK01060 endonuclease IV; Prov 63.2 1.9E+02 0.004 29.8 15.2 99 108-242 6-112 (281)
228 PRK11840 bifunctional sulfur c 63.0 2.4E+02 0.0053 31.5 15.0 151 106-299 137-300 (326)
229 smart00729 Elp3 Elongator prot 62.8 57 0.0012 30.5 9.1 52 219-288 69-125 (216)
230 PF05690 ThiG: Thiazole biosyn 62.7 13 0.00029 39.6 5.3 88 98-190 88-206 (247)
231 PRK13813 orotidine 5'-phosphat 62.5 1.7E+02 0.0038 29.2 13.2 127 113-280 11-146 (215)
232 TIGR00559 pdxJ pyridoxine 5'-p 62.3 23 0.0005 37.6 7.0 81 144-242 108-189 (237)
233 TIGR03849 arch_ComA phosphosul 62.3 16 0.00035 38.7 5.8 58 218-287 41-98 (237)
234 PRK08599 coproporphyrinogen II 62.0 44 0.00095 36.5 9.3 91 223-320 102-197 (377)
235 PLN03228 methylthioalkylmalate 61.8 3E+02 0.0065 32.3 16.2 140 114-297 102-249 (503)
236 TIGR01362 KDO8P_synth 3-deoxy- 61.7 61 0.0013 35.0 9.9 123 103-279 9-149 (258)
237 cd03315 MLE_like Muconate lact 61.5 42 0.0009 34.7 8.6 66 116-184 85-154 (265)
238 TIGR03471 HpnJ hopanoid biosyn 61.1 2.5E+02 0.0054 31.8 15.2 73 222-298 288-364 (472)
239 PLN03033 2-dehydro-3-deoxyphos 60.8 63 0.0014 35.4 10.0 114 117-279 32-163 (290)
240 PTZ00300 pyruvate kinase; Prov 60.7 52 0.0011 37.9 9.9 155 118-303 147-312 (454)
241 PRK05660 HemN family oxidoredu 60.7 1.2E+02 0.0026 33.5 12.4 136 117-298 40-185 (378)
242 PRK09490 metH B12-dependent me 60.5 79 0.0017 40.7 12.2 124 117-266 163-302 (1229)
243 PRK12376 putative translaldola 60.4 33 0.00071 36.2 7.7 75 99-181 56-132 (236)
244 PF04131 NanE: Putative N-acet 60.1 15 0.00032 37.9 5.0 66 119-187 100-172 (192)
245 cd00959 DeoC 2-deoxyribose-5-p 59.8 1.7E+02 0.0037 29.5 12.4 138 124-299 23-170 (203)
246 cd00003 PNPsynthase Pyridoxine 59.4 29 0.00062 36.9 7.0 81 144-242 108-189 (234)
247 COG5016 Pyruvate/oxaloacetate 59.2 1.2E+02 0.0025 35.2 12.0 135 98-238 137-290 (472)
248 PRK05567 inosine 5'-monophosph 58.9 25 0.00054 40.1 7.1 67 119-187 278-359 (486)
249 PRK05458 guanosine 5'-monophos 58.7 26 0.00056 38.6 6.9 62 120-187 150-229 (326)
250 cd06821 PLPDE_III_D-TA Type II 58.7 2E+02 0.0043 31.0 13.5 34 124-166 49-82 (361)
251 PRK05826 pyruvate kinase; Prov 58.6 48 0.001 38.2 9.2 155 117-302 172-338 (465)
252 cd02803 OYE_like_FMN_family Ol 58.6 75 0.0016 33.7 10.1 206 91-307 4-244 (327)
253 PRK00043 thiE thiamine-phospha 58.6 18 0.0004 35.4 5.2 49 118-167 21-71 (212)
254 TIGR01306 GMP_reduct_2 guanosi 58.4 26 0.00057 38.5 6.8 51 120-176 147-215 (321)
255 cd00377 ICL_PEPM Members of th 58.2 2.4E+02 0.0052 29.5 14.6 160 125-317 23-207 (243)
256 cd00430 PLPDE_III_AR Type III 57.9 1.6E+02 0.0035 31.8 12.7 22 126-149 47-68 (367)
257 cd06810 PLPDE_III_ODC_DapDC_li 57.5 87 0.0019 33.6 10.5 58 219-281 149-207 (368)
258 cd04823 ALAD_PBGS_aspartate_ri 57.4 16 0.00036 40.2 5.0 49 115-166 135-188 (320)
259 cd06824 PLPDE_III_Yggs_like Py 57.1 1.1E+02 0.0024 31.1 10.7 154 119-314 36-201 (224)
260 PRK10382 alkyl hydroperoxide r 57.0 43 0.00093 33.7 7.6 70 102-175 32-105 (187)
261 PRK05265 pyridoxine 5'-phospha 56.8 30 0.00064 36.9 6.6 79 144-241 111-190 (239)
262 PRK10550 tRNA-dihydrouridine s 56.8 68 0.0015 34.9 9.5 34 101-138 62-95 (312)
263 PLN02321 2-isopropylmalate syn 56.7 4.3E+02 0.0094 32.0 17.5 139 114-297 104-250 (632)
264 cd03325 D-galactonate_dehydrat 56.2 76 0.0016 34.5 9.9 68 115-185 122-202 (352)
265 cd03324 rTSbeta_L-fuconate_deh 56.2 62 0.0013 36.5 9.4 52 161-234 294-348 (415)
266 cd04726 KGPDC_HPS 3-Keto-L-gul 56.0 70 0.0015 31.3 8.8 95 113-238 8-108 (202)
267 PRK00077 eno enolase; Provisio 55.9 1.3E+02 0.0028 34.0 11.9 101 115-244 261-367 (425)
268 PRK02901 O-succinylbenzoate sy 55.8 1.1E+02 0.0023 33.6 10.9 89 116-237 146-238 (327)
269 PF08209 Sgf11: Sgf11 (transcr 55.7 6.6 0.00014 29.9 1.2 13 640-652 2-14 (33)
270 KOG2335 tRNA-dihydrouridine sy 55.5 83 0.0018 35.4 10.0 77 115-196 152-241 (358)
271 PRK05628 coproporphyrinogen II 55.4 66 0.0014 35.2 9.3 73 223-298 110-186 (375)
272 TIGR03217 4OH_2_O_val_ald 4-hy 55.3 3.2E+02 0.007 30.1 15.1 143 115-299 21-184 (333)
273 PRK02083 imidazole glycerol ph 55.3 86 0.0019 32.4 9.7 126 121-280 33-173 (253)
274 COG2089 SpsE Sialic acid synth 55.1 3.6E+02 0.0077 30.5 15.0 149 91-284 2-185 (347)
275 PRK07329 hypothetical protein; 54.8 60 0.0013 33.6 8.5 77 217-305 164-240 (246)
276 TIGR02109 PQQ_syn_pqqE coenzym 54.6 1.2E+02 0.0025 32.7 10.9 96 218-356 68-164 (358)
277 TIGR01060 eno phosphopyruvate 54.4 55 0.0012 37.0 8.7 74 143-243 290-367 (425)
278 cd03320 OSBS o-Succinylbenzoat 54.4 62 0.0013 33.6 8.5 63 119-184 85-152 (263)
279 PF04476 DUF556: Protein of un 54.0 1.5E+02 0.0033 31.7 11.2 110 123-249 72-195 (235)
280 TIGR02082 metH 5-methyltetrahy 53.8 1.6E+02 0.0034 37.9 13.3 125 117-267 147-287 (1178)
281 COG2877 KdsA 3-deoxy-D-manno-o 53.7 1.1E+02 0.0024 33.1 10.2 80 89-173 3-100 (279)
282 TIGR00343 pyridoxal 5'-phospha 53.7 74 0.0016 34.8 9.1 115 119-245 122-278 (287)
283 PLN02623 pyruvate kinase 53.5 2.9E+02 0.0062 33.2 14.5 153 121-303 281-443 (581)
284 PRK00278 trpC indole-3-glycero 53.3 2.2E+02 0.0047 30.1 12.4 74 115-192 117-191 (260)
285 PRK14040 oxaloacetate decarbox 53.2 3.4E+02 0.0074 32.4 15.1 153 117-311 26-203 (593)
286 cd03016 PRX_1cys Peroxiredoxin 53.2 46 0.001 33.4 7.2 55 114-169 42-97 (203)
287 PRK09058 coproporphyrinogen II 53.1 1.6E+02 0.0034 33.5 12.0 58 223-283 165-222 (449)
288 PRK05096 guanosine 5'-monophos 53.0 1.1E+02 0.0023 34.4 10.4 102 118-234 107-216 (346)
289 cd03318 MLE Muconate Lactonizi 53.0 2.3E+02 0.0049 30.9 12.8 158 115-299 141-314 (365)
290 cd00381 IMPDH IMPDH: The catal 52.9 43 0.00092 36.5 7.3 74 119-194 144-241 (325)
291 TIGR01125 MiaB-like tRNA modif 52.8 2.5E+02 0.0054 31.5 13.4 72 223-298 234-313 (430)
292 cd04824 eu_ALAD_PBGS_cysteine_ 52.5 18 0.00038 40.0 4.3 49 115-166 134-188 (320)
293 PRK12581 oxaloacetate decarbox 52.4 67 0.0015 37.2 9.1 77 108-189 153-241 (468)
294 PRK07807 inosine 5-monophospha 52.3 77 0.0017 36.6 9.6 97 121-234 229-333 (479)
295 PRK09283 delta-aminolevulinic 52.1 18 0.00039 39.9 4.3 50 114-166 137-191 (323)
296 COG0021 TktA Transketolase [Ca 52.1 1.2E+02 0.0027 36.6 11.2 132 529-676 477-610 (663)
297 TIGR02494 PFLE_PFLC glycyl-rad 52.0 88 0.0019 32.7 9.3 96 220-361 143-241 (295)
298 TIGR00587 nfo apurinic endonuc 51.6 2.7E+02 0.0059 29.2 12.8 110 121-269 14-131 (274)
299 TIGR02534 mucon_cyclo muconate 51.5 2.8E+02 0.0061 30.3 13.3 67 116-185 141-213 (368)
300 PRK14017 galactonate dehydrata 51.5 99 0.0021 34.0 9.9 136 115-275 123-281 (382)
301 cd03327 MR_like_2 Mandelate ra 51.3 75 0.0016 34.4 8.9 55 159-235 220-277 (341)
302 PF01081 Aldolase: KDPG and KH 51.3 1.2E+02 0.0026 31.2 9.8 93 114-238 16-108 (196)
303 PF00150 Cellulase: Cellulase 51.1 20 0.00044 35.9 4.3 68 101-171 5-85 (281)
304 PRK08195 4-hyroxy-2-oxovalerat 51.0 3.8E+02 0.0082 29.6 15.7 145 115-299 22-185 (337)
305 PRK14042 pyruvate carboxylase 50.6 48 0.001 39.4 7.8 74 108-186 144-227 (596)
306 TIGR01859 fruc_bis_ald_ fructo 50.6 2.8E+02 0.0061 29.9 12.9 163 113-309 22-203 (282)
307 TIGR01306 GMP_reduct_2 guanosi 50.5 1.7E+02 0.0037 32.4 11.4 69 118-192 93-171 (321)
308 PRK13384 delta-aminolevulinic 50.4 20 0.00043 39.6 4.3 50 114-166 139-193 (322)
309 TIGR00875 fsa_talC_mipB fructo 50.4 1.9E+02 0.004 30.1 11.1 79 102-190 52-131 (213)
310 PRK08649 inosine 5-monophospha 50.3 47 0.001 37.1 7.2 63 119-187 142-214 (368)
311 TIGR00089 RNA modification enz 50.1 3.1E+02 0.0067 30.6 13.6 138 113-298 166-317 (429)
312 PLN02489 homocysteine S-methyl 50.0 87 0.0019 34.4 9.2 48 120-170 169-217 (335)
313 PF00919 UPF0004: Uncharacteri 50.0 25 0.00054 32.1 4.3 62 627-688 20-86 (98)
314 PRK09140 2-dehydro-3-deoxy-6-p 49.7 2.2E+02 0.0048 29.2 11.4 90 115-238 19-111 (206)
315 TIGR01108 oadA oxaloacetate de 49.7 59 0.0013 38.4 8.3 74 108-186 139-222 (582)
316 PRK13352 thiamine biosynthesis 49.6 1.9E+02 0.0042 33.4 11.8 145 110-282 69-225 (431)
317 PF01261 AP_endonuc_2: Xylose 49.6 44 0.00094 31.7 6.1 64 217-281 26-92 (213)
318 TIGR00190 thiC thiamine biosyn 49.4 2.3E+02 0.0049 32.7 12.3 142 110-282 69-222 (423)
319 cd00635 PLPDE_III_YBL036c_like 49.4 1.9E+02 0.0042 29.2 10.9 22 128-151 44-65 (222)
320 PRK00230 orotidine 5'-phosphat 49.4 2.3E+02 0.005 29.3 11.6 138 113-280 10-155 (230)
321 COG0036 Rpe Pentose-5-phosphat 49.4 45 0.00098 35.1 6.5 147 100-297 60-217 (220)
322 cd03322 rpsA The starvation se 49.3 81 0.0017 34.5 8.8 63 115-185 125-189 (361)
323 cd03328 MR_like_3 Mandelate ra 49.2 90 0.0019 34.1 9.1 56 160-237 234-292 (352)
324 TIGR01418 PEP_synth phosphoeno 49.2 1.4E+02 0.0031 36.5 11.6 136 121-280 616-766 (782)
325 PRK07455 keto-hydroxyglutarate 49.0 97 0.0021 31.1 8.6 89 115-238 21-112 (187)
326 PRK06294 coproporphyrinogen II 48.9 83 0.0018 34.6 8.9 71 223-297 105-180 (370)
327 TIGR03470 HpnH hopanoid biosyn 48.7 84 0.0018 33.9 8.7 80 218-299 87-190 (318)
328 PF02784 Orn_Arg_deC_N: Pyrido 48.6 1.6E+02 0.0035 30.1 10.4 110 120-275 75-195 (251)
329 COG0635 HemN Coproporphyrinoge 48.5 56 0.0012 36.9 7.6 65 223-291 139-204 (416)
330 PRK12331 oxaloacetate decarbox 48.3 55 0.0012 37.5 7.6 77 108-189 144-232 (448)
331 smart00518 AP2Ec AP endonuclea 48.2 3.2E+02 0.007 28.0 12.6 87 122-242 14-107 (273)
332 TIGR02534 mucon_cyclo muconate 48.2 1.3E+02 0.0027 33.0 10.0 57 159-237 236-295 (368)
333 PRK14016 cyanophycin synthetas 47.9 1.4E+02 0.0031 36.1 11.2 76 222-298 164-284 (727)
334 TIGR03278 methan_mark_10 putat 47.7 43 0.00093 37.9 6.5 53 218-288 89-143 (404)
335 cd04725 OMP_decarboxylase_like 47.5 2.7E+02 0.0058 28.5 11.6 139 113-283 6-152 (216)
336 cd04732 HisA HisA. Phosphorib 47.5 1.4E+02 0.0029 30.1 9.5 149 120-309 31-193 (234)
337 TIGR00539 hemN_rel putative ox 47.4 88 0.0019 34.1 8.7 71 223-297 102-177 (360)
338 PRK01362 putative translaldola 47.4 1.9E+02 0.0041 30.1 10.6 81 102-192 52-133 (214)
339 PLN02520 bifunctional 3-dehydr 47.1 4.9E+02 0.011 30.4 15.0 147 115-309 32-195 (529)
340 PRK15072 bifunctional D-altron 47.1 1E+02 0.0022 34.4 9.2 65 146-237 247-314 (404)
341 PRK06464 phosphoenolpyruvate s 46.8 2.1E+02 0.0045 35.3 12.4 155 119-299 621-790 (795)
342 PF00834 Ribul_P_3_epim: Ribul 46.6 24 0.00052 36.1 4.0 110 101-241 57-174 (201)
343 PF07503 zf-HYPF: HypF finger; 46.5 7.1 0.00015 30.0 0.2 16 636-651 15-30 (35)
344 cd06828 PLPDE_III_DapDC Type I 46.2 4E+02 0.0087 28.7 13.3 31 122-154 85-115 (373)
345 PRK00311 panB 3-methyl-2-oxobu 45.9 2.2E+02 0.0047 30.7 11.1 132 120-279 3-180 (264)
346 PF01487 DHquinase_I: Type I 3 45.8 3.4E+02 0.0073 27.5 13.9 167 115-324 7-188 (224)
347 PRK12330 oxaloacetate decarbox 45.7 63 0.0014 37.7 7.6 70 112-186 149-230 (499)
348 PRK13361 molybdenum cofactor b 45.7 79 0.0017 34.1 7.9 50 218-286 76-127 (329)
349 PF13407 Peripla_BP_4: Peripla 45.6 2.3E+02 0.005 28.0 10.6 126 148-300 17-148 (257)
350 TIGR02026 BchE magnesium-proto 45.6 5.2E+02 0.011 29.7 14.8 74 222-298 288-364 (497)
351 PRK09485 mmuM homocysteine met 45.5 1.3E+02 0.0028 32.4 9.5 48 121-171 143-191 (304)
352 cd00384 ALAD_PBGS Porphobilino 45.5 26 0.00056 38.7 4.2 50 114-166 129-183 (314)
353 COG1326 Uncharacterized archae 45.4 15 0.00033 38.1 2.3 22 638-660 2-23 (201)
354 TIGR02668 moaA_archaeal probab 45.4 86 0.0019 32.9 8.0 49 219-286 72-121 (302)
355 cd01016 TroA Metal binding pro 45.3 1.2E+02 0.0025 32.1 9.0 168 98-280 18-217 (276)
356 TIGR01304 IMP_DH_rel_2 IMP deh 45.2 75 0.0016 35.7 7.8 67 119-191 143-219 (369)
357 cd07941 DRE_TIM_LeuA3 Desulfob 45.1 1.1E+02 0.0023 32.4 8.6 70 102-176 133-210 (273)
358 PLN02424 ketopantoate hydroxym 45.1 76 0.0017 35.4 7.7 73 84-174 91-164 (332)
359 PLN02540 methylenetetrahydrofo 45.1 6.1E+02 0.013 30.4 15.4 162 115-279 41-267 (565)
360 COG0294 FolP Dihydropteroate s 45.0 4.3E+02 0.0093 28.5 16.3 204 115-362 28-259 (274)
361 PRK15000 peroxidase; Provision 45.0 50 0.0011 33.3 6.0 69 101-169 34-107 (200)
362 PRK14469 ribosomal RNA large s 45.0 91 0.002 34.1 8.3 102 118-237 192-320 (343)
363 PRK14338 (dimethylallyl)adenos 44.7 4.4E+02 0.0096 30.1 13.9 134 113-298 182-333 (459)
364 PF04423 Rad50_zn_hook: Rad50 44.7 6.7 0.00014 31.8 -0.2 25 644-668 22-48 (54)
365 PHA00616 hypothetical protein 44.6 14 0.0003 29.9 1.6 25 644-668 3-27 (44)
366 PF05853 DUF849: Prokaryotic p 44.4 74 0.0016 33.9 7.4 191 116-345 24-234 (272)
367 PF04055 Radical_SAM: Radical 44.4 1.9E+02 0.0042 25.8 9.1 71 222-296 91-166 (166)
368 cd06815 PLPDE_III_AR_like_1 Ty 44.3 2.6E+02 0.0057 30.4 11.7 119 104-272 27-147 (353)
369 PRK12656 fructose-6-phosphate 44.2 2.2E+02 0.0047 30.0 10.5 78 98-185 51-130 (222)
370 CHL00194 ycf39 Ycf39; Provisio 44.2 3.3E+02 0.0071 28.6 12.0 126 124-279 17-142 (317)
371 PRK12655 fructose-6-phosphate 44.2 2E+02 0.0044 30.1 10.3 76 98-183 50-126 (220)
372 cd03326 MR_like_1 Mandelate ra 43.9 1.3E+02 0.0029 33.5 9.5 91 116-234 217-317 (385)
373 PRK14334 (dimethylallyl)adenos 43.7 3E+02 0.0065 31.1 12.3 135 114-298 166-315 (440)
374 PRK05458 guanosine 5'-monophos 43.6 72 0.0016 35.2 7.3 68 119-192 97-174 (326)
375 TIGR02151 IPP_isom_2 isopenten 43.3 1.5E+02 0.0033 32.4 9.7 143 101-282 53-212 (333)
376 PRK14041 oxaloacetate decarbox 43.2 75 0.0016 36.7 7.6 74 108-186 143-226 (467)
377 cd04728 ThiG Thiazole synthase 43.1 4.7E+02 0.01 28.4 14.8 124 131-299 90-226 (248)
378 PF00490 ALAD: Delta-aminolevu 42.8 23 0.0005 39.2 3.4 51 113-166 138-193 (324)
379 PLN02537 diaminopimelate decar 42.6 3.2E+02 0.0069 30.3 12.2 110 122-275 100-221 (410)
380 TIGR01458 HAD-SF-IIA-hyp3 HAD- 42.4 66 0.0014 33.4 6.5 60 219-278 25-90 (257)
381 COG1082 IolE Sugar phosphate i 42.3 3.8E+02 0.0082 27.1 11.8 162 114-299 14-198 (274)
382 PRK00955 hypothetical protein; 41.9 3.1E+02 0.0068 33.1 12.6 86 233-328 436-527 (620)
383 PF08901 DUF1847: Protein of u 41.8 65 0.0014 32.5 6.0 54 219-287 42-95 (157)
384 PRK03170 dihydrodipicolinate s 41.7 2.5E+02 0.0054 29.6 10.7 106 162-299 11-125 (292)
385 cd03328 MR_like_3 Mandelate ra 41.7 1.5E+02 0.0032 32.4 9.3 67 116-185 138-208 (352)
386 PRK05481 lipoyl synthase; Prov 41.7 4.6E+02 0.01 28.1 12.8 137 115-279 80-230 (289)
387 TIGR00875 fsa_talC_mipB fructo 41.7 87 0.0019 32.5 7.2 74 119-192 110-189 (213)
388 COG2876 AroA 3-deoxy-D-arabino 41.7 1.5E+02 0.0032 32.5 9.0 115 89-234 31-155 (286)
389 cd06333 PBP1_ABC-type_HAAT_lik 41.4 4.1E+02 0.0089 27.2 14.1 72 109-187 169-241 (312)
390 TIGR00736 nifR3_rel_arch TIM-b 41.4 2.7E+02 0.006 29.3 10.8 143 92-285 16-173 (231)
391 PLN00191 enolase 41.3 1E+02 0.0022 35.5 8.3 95 115-238 295-395 (457)
392 PRK12928 lipoyl synthase; Prov 41.2 4.4E+02 0.0095 28.5 12.6 69 218-299 188-269 (290)
393 PF09538 FYDLN_acid: Protein o 41.1 10 0.00022 35.6 0.4 14 644-657 11-24 (108)
394 cd00950 DHDPS Dihydrodipicolin 41.1 2.6E+02 0.0056 29.3 10.7 106 162-299 10-124 (284)
395 PRK07328 histidinol-phosphatas 41.1 69 0.0015 33.5 6.4 72 217-300 176-247 (269)
396 PF00682 HMGL-like: HMGL-like 41.0 4E+02 0.0086 27.0 13.0 150 104-320 56-219 (237)
397 TIGR01305 GMP_reduct_1 guanosi 40.9 1.9E+02 0.0041 32.6 9.9 73 118-195 106-187 (343)
398 PLN02428 lipoic acid synthase 40.9 5.7E+02 0.012 28.8 14.5 157 115-299 130-312 (349)
399 PRK13585 1-(5-phosphoribosyl)- 40.8 2.3E+02 0.0051 28.7 10.1 63 120-187 34-104 (241)
400 cd00288 Pyruvate_Kinase Pyruva 40.8 3.7E+02 0.008 31.4 12.6 173 99-302 155-338 (480)
401 cd03145 GAT1_cyanophycinase Ty 40.6 2E+02 0.0042 29.4 9.5 111 115-243 12-128 (217)
402 cd01020 TroA_b Metal binding p 40.5 1.1E+02 0.0024 32.0 7.8 177 98-299 19-230 (264)
403 TIGR00222 panB 3-methyl-2-oxob 40.4 74 0.0016 34.3 6.6 109 101-231 138-254 (263)
404 PRK13191 putative peroxiredoxi 40.3 66 0.0014 33.0 6.0 55 114-169 50-105 (215)
405 PRK07028 bifunctional hexulose 40.2 2.1E+02 0.0045 32.1 10.4 117 121-263 121-245 (430)
406 PRK00208 thiG thiazole synthas 40.1 5.2E+02 0.011 28.0 14.7 123 131-299 90-226 (250)
407 cd02809 alpha_hydroxyacid_oxid 39.8 4.6E+02 0.0099 28.1 12.4 79 102-188 116-200 (299)
408 cd00439 Transaldolase Transald 39.8 3.9E+02 0.0084 28.4 11.7 86 101-192 84-171 (252)
409 PRK09404 sucA 2-oxoglutarate d 39.8 2.1E+02 0.0045 36.1 11.0 144 183-345 446-607 (924)
410 TIGR03822 AblA_like_2 lysine-2 39.7 1.5E+02 0.0032 32.2 8.9 94 218-315 153-270 (321)
411 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.4 1.2E+02 0.0026 32.1 8.0 74 108-186 139-222 (275)
412 cd04735 OYE_like_4_FMN Old yel 39.4 1.5E+02 0.0033 32.4 9.0 138 141-285 73-224 (353)
413 PTZ00170 D-ribulose-5-phosphat 39.1 2.5E+02 0.0053 29.1 10.0 132 115-280 16-157 (228)
414 PRK15072 bifunctional D-altron 39.1 1.9E+02 0.0041 32.3 9.8 68 115-185 126-232 (404)
415 COG0646 MetH Methionine syntha 38.9 2.7E+02 0.0058 31.0 10.5 121 529-664 147-281 (311)
416 PRK15014 6-phospho-beta-glucos 38.9 1.1E+02 0.0025 35.1 8.3 52 220-271 112-164 (477)
417 PRK00278 trpC indole-3-glycero 38.7 2E+02 0.0043 30.4 9.4 86 121-234 73-163 (260)
418 cd03174 DRE_TIM_metallolyase D 38.7 1.3E+02 0.0028 30.5 7.9 72 101-176 128-205 (265)
419 PF13344 Hydrolase_6: Haloacid 38.6 60 0.0013 29.3 4.9 55 220-274 19-79 (101)
420 COG0623 FabI Enoyl-[acyl-carri 38.6 2.5E+02 0.0054 30.5 10.0 152 125-292 26-196 (259)
421 PRK14456 ribosomal RNA large s 38.6 2.8E+02 0.006 31.1 10.9 109 120-242 220-353 (368)
422 PRK00865 glutamate racemase; P 38.4 75 0.0016 33.3 6.2 45 118-169 54-98 (261)
423 PRK10200 putative racemase; Pr 38.3 65 0.0014 33.3 5.7 43 117-166 61-103 (230)
424 COG4948 L-alanine-DL-glutamate 37.9 1.5E+02 0.0032 32.4 8.6 87 97-186 122-215 (372)
425 PRK09282 pyruvate carboxylase 37.7 5.6E+02 0.012 30.6 13.8 155 115-311 23-202 (592)
426 cd01335 Radical_SAM Radical SA 37.7 1.1E+02 0.0024 28.0 6.6 52 219-288 60-113 (204)
427 cd01019 ZnuA Zinc binding prot 37.6 1E+02 0.0022 32.7 7.1 138 98-252 20-197 (286)
428 PF09855 DUF2082: Nucleic-acid 37.5 18 0.00038 31.3 1.2 18 637-654 31-48 (64)
429 cd02801 DUS_like_FMN Dihydrour 37.5 1.7E+02 0.0037 29.2 8.4 103 156-280 49-158 (231)
430 COG2069 CdhD CO dehydrogenase/ 37.4 1.6E+02 0.0035 32.9 8.6 79 127-234 160-254 (403)
431 cd00622 PLPDE_III_ODC Type III 37.3 5.2E+02 0.011 27.9 12.5 111 124-274 41-153 (362)
432 PRK05437 isopentenyl pyrophosp 37.3 6E+02 0.013 28.2 13.2 83 101-189 60-156 (352)
433 PRK01362 putative translaldola 37.2 69 0.0015 33.3 5.7 85 119-207 110-200 (214)
434 TIGR03151 enACPred_II putative 37.0 1.7E+02 0.0038 31.6 8.9 108 159-280 9-136 (307)
435 COG2051 RPS27A Ribosomal prote 37.0 15 0.00031 32.3 0.6 14 640-653 36-49 (67)
436 TIGR02635 RhaI_grampos L-rhamn 36.9 1.9E+02 0.0042 32.6 9.4 116 218-346 69-210 (378)
437 PRK13575 3-dehydroquinate dehy 36.6 1.8E+02 0.0039 30.6 8.6 54 112-166 136-191 (238)
438 TIGR03551 F420_cofH 7,8-dideme 36.6 3.2E+02 0.007 29.7 10.9 42 113-154 68-115 (343)
439 cd01568 QPRTase_NadC Quinolina 36.5 1.1E+02 0.0024 32.5 7.2 64 120-187 190-254 (269)
440 cd01145 TroA_c Periplasmic bin 36.4 2.2E+02 0.0047 28.6 8.9 138 98-252 19-184 (203)
441 COG1251 NirB NAD(P)H-nitrite r 36.4 58 0.0013 39.8 5.6 90 606-701 586-688 (793)
442 PRK05904 coproporphyrinogen II 36.0 1.7E+02 0.0037 32.2 8.7 73 223-298 105-181 (353)
443 PF10566 Glyco_hydro_97: Glyco 36.0 76 0.0016 34.3 5.9 68 218-300 73-146 (273)
444 PRK09282 pyruvate carboxylase 36.0 1E+02 0.0023 36.5 7.5 77 108-189 144-232 (592)
445 PF00701 DHDPS: Dihydrodipicol 35.9 5.2E+02 0.011 27.2 12.0 108 161-299 10-125 (289)
446 cd06812 PLPDE_III_DSD_D-TA_lik 35.8 6.1E+02 0.013 27.6 15.3 40 119-167 42-81 (374)
447 PRK06256 biotin synthase; Vali 35.8 5.8E+02 0.013 27.4 16.1 25 114-138 90-114 (336)
448 cd00439 Transaldolase Transald 35.8 61 0.0013 34.3 5.1 58 236-299 81-138 (252)
449 PRK02714 O-succinylbenzoate sy 35.7 2.6E+02 0.0055 30.3 9.9 56 159-239 215-273 (320)
450 PLN02591 tryptophan synthase 35.7 4E+02 0.0087 28.4 11.1 98 115-238 13-138 (250)
451 PRK09856 fructoselysine 3-epim 35.7 1.3E+02 0.0028 30.7 7.4 89 219-310 48-148 (275)
452 PRK05301 pyrroloquinoline quin 35.6 2.1E+02 0.0045 31.2 9.3 57 219-275 78-156 (378)
453 cd03129 GAT1_Peptidase_E_like 35.6 2.2E+02 0.0048 28.5 8.8 155 130-317 28-188 (210)
454 TIGR01579 MiaB-like-C MiaB-lik 35.6 4.6E+02 0.01 29.2 12.1 134 113-298 165-316 (414)
455 PRK15440 L-rhamnonate dehydrat 35.5 2.2E+02 0.0047 32.0 9.6 58 160-242 260-320 (394)
456 cd06557 KPHMT-like Ketopantoat 35.5 81 0.0018 33.6 6.0 92 117-230 157-251 (254)
457 TIGR00067 glut_race glutamate 35.4 89 0.0019 32.8 6.2 42 118-165 47-89 (251)
458 PRK08005 epimerase; Validated 35.4 2.6E+02 0.0056 29.1 9.5 82 102-194 59-144 (210)
459 cd03013 PRX5_like Peroxiredoxi 35.4 1.1E+02 0.0023 29.6 6.4 47 117-169 50-99 (155)
460 PRK12857 fructose-1,6-bisphosp 35.4 3.2E+02 0.007 29.7 10.5 86 537-636 42-127 (284)
461 PRK13189 peroxiredoxin; Provis 35.3 79 0.0017 32.5 5.7 67 102-169 36-107 (222)
462 PRK08185 hypothetical protein; 35.1 6.3E+02 0.014 27.6 13.2 164 113-309 19-201 (283)
463 PRK13762 tRNA-modifying enzyme 34.7 88 0.0019 34.1 6.3 49 218-287 145-193 (322)
464 TIGR00035 asp_race aspartate r 34.7 84 0.0018 32.1 5.8 41 118-165 62-102 (229)
465 PRK13843 conjugal transfer pro 34.3 14 0.0003 38.5 0.1 59 276-362 42-106 (207)
466 cd03146 GAT1_Peptidase_E Type 34.2 1.8E+02 0.004 29.4 8.1 104 121-243 21-125 (212)
467 COG0856 Orotate phosphoribosyl 33.9 2E+02 0.0044 30.0 8.2 115 200-327 15-135 (203)
468 PF00215 OMPdecase: Orotidine 33.8 4.6E+02 0.01 26.7 10.9 140 113-282 8-161 (226)
469 COG0646 MetH Methionine syntha 33.7 6.6E+02 0.014 28.1 12.4 150 117-295 142-307 (311)
470 PRK05588 histidinol-phosphatas 33.7 1.6E+02 0.0035 30.3 7.8 79 216-306 164-242 (255)
471 PRK15452 putative protease; Pr 33.3 2.6E+02 0.0055 32.2 9.8 129 172-348 13-142 (443)
472 cd06556 ICL_KPHMT Members of t 33.0 77 0.0017 33.4 5.3 45 114-166 152-196 (240)
473 PRK13599 putative peroxiredoxi 32.8 99 0.0021 31.8 5.9 53 116-169 47-100 (215)
474 PF11023 DUF2614: Protein of u 32.7 23 0.00051 33.9 1.3 24 628-651 55-78 (114)
475 TIGR01048 lysA diaminopimelate 32.6 6.7E+02 0.015 27.7 12.7 25 257-281 210-234 (417)
476 PRK14337 (dimethylallyl)adenos 32.5 6.8E+02 0.015 28.4 13.0 30 113-142 175-204 (446)
477 PRK05848 nicotinate-nucleotide 32.5 1.4E+02 0.0029 32.3 7.1 63 120-185 191-254 (273)
478 cd04726 KGPDC_HPS 3-Keto-L-gul 32.5 2.5E+02 0.0055 27.4 8.5 79 101-191 53-136 (202)
479 PRK12656 fructose-6-phosphate 32.4 89 0.0019 32.8 5.6 74 119-192 114-193 (222)
480 cd00331 IGPS Indole-3-glycerol 32.3 2.8E+02 0.006 27.9 8.9 64 122-189 85-149 (217)
481 PRK09195 gatY tagatose-bisphos 32.2 3.2E+02 0.007 29.7 9.9 86 537-636 42-127 (284)
482 PRK14455 ribosomal RNA large s 32.1 2.4E+02 0.0053 31.3 9.2 113 115-242 200-337 (356)
483 TIGR02109 PQQ_syn_pqqE coenzym 31.9 6.8E+02 0.015 27.0 14.6 136 116-280 38-180 (358)
484 cd02933 OYE_like_FMN Old yello 31.8 2.1E+02 0.0045 31.4 8.5 74 210-285 144-227 (338)
485 TIGR00196 yjeF_cterm yjeF C-te 31.6 2.7E+02 0.0059 29.0 9.0 83 119-234 39-122 (272)
486 TIGR02666 moaA molybdenum cofa 31.3 1.9E+02 0.0041 31.0 8.0 83 216-299 72-181 (334)
487 PF13941 MutL: MutL protein 31.3 5.4E+02 0.012 30.0 12.0 90 511-614 97-186 (457)
488 cd04747 OYE_like_5_FMN Old yel 31.3 2.3E+02 0.0049 31.7 8.8 77 115-196 232-336 (361)
489 KOG2368 Hydroxymethylglutaryl- 31.1 1.5E+02 0.0032 32.1 6.9 101 118-235 40-151 (316)
490 cd07940 DRE_TIM_IPMS 2-isoprop 31.0 2.2E+02 0.0047 29.8 8.2 71 103-176 129-204 (268)
491 cd00394 Clp_protease_like Case 31.0 4.5E+02 0.0098 24.9 9.7 108 117-227 13-129 (161)
492 TIGR01108 oadA oxaloacetate de 30.9 9.9E+02 0.022 28.6 14.8 130 116-286 19-173 (582)
493 PF01729 QRPTase_C: Quinolinat 30.9 1.1E+02 0.0023 30.7 5.7 49 121-172 90-138 (169)
494 PRK07475 hypothetical protein; 30.8 2.1E+02 0.0046 29.9 8.1 62 230-299 38-99 (245)
495 cd02803 OYE_like_FMN_family Ol 30.6 2E+02 0.0043 30.6 8.0 94 98-196 205-319 (327)
496 TIGR02300 FYDLN_acid conserved 30.6 20 0.00043 35.0 0.5 14 644-657 11-24 (129)
497 PRK02714 O-succinylbenzoate sy 30.5 1.7E+02 0.0038 31.5 7.6 65 117-184 119-188 (320)
498 cd07939 DRE_TIM_NifV Streptomy 30.5 2.8E+02 0.006 29.0 8.8 68 103-176 125-197 (259)
499 TIGR03829 YokU_near_AblA uncha 30.4 36 0.00078 31.3 2.1 27 639-666 32-58 (89)
500 PTZ00137 2-Cys peroxiredoxin; 30.2 1.4E+02 0.0031 32.0 6.7 72 102-175 99-175 (261)
No 1
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=100.00 E-value=1.2e-200 Score=1649.80 Aligned_cols=698 Identities=88% Similarity=1.356 Sum_probs=649.8
Q ss_pred CCCCCCCcccCCcccccCCCcccccccceeecceeeeccccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 005248 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI 80 (706)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 80 (706)
||+|.+|+++.+++.+..+++|.++++|.+. +++++.++.++. ++.+++.++++++++++++.|.++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 72 (733)
T PLN02925 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI 72 (733)
T ss_pred CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence 8999999999999999999999999999665 333455555553 66788999999999999999999999999
Q ss_pred cccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc
Q 005248 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY 160 (706)
Q Consensus 81 ~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 160 (706)
|+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||||||++++|+||++|+++|+++|+
T Consensus 73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 152 (733)
T PLN02925 73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY 152 (733)
T ss_pred hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC
Q 005248 161 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240 (706)
Q Consensus 161 ~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~ 240 (706)
++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||+||+++|.+||++||++|+||||||||
T Consensus 153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~ 232 (733)
T PLN02925 153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232 (733)
T ss_pred CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (706)
Q Consensus 241 GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~ 320 (706)
||||+|+|+||||||+|||||||||+++||++||+|||||||||||++||+|||+|+++|+++|++|||||||||||+++
T Consensus 233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e 312 (733)
T PLN02925 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE 312 (733)
T ss_pred cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccccC
Q 005248 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 400 (706)
Q Consensus 321 ~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~~g 400 (706)
+|+||||+|||+||.||||||||||||+||++|||||++|+++..+...++..++.|++..+||++|.||.+..+...+|
T Consensus 313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg 392 (733)
T PLN02925 313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG 392 (733)
T ss_pred CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence 99999999999999999999999999999999999999999977664333334677999999999999999998888888
Q ss_pred CccccccccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHHhhccccc
Q 005248 401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480 (706)
Q Consensus 401 ~~~~~~~v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~~~~~~~~ 480 (706)
+.+|++.++|++++|+..+++++|+.++++|+.++++..+|+++++..++|+||++++|+..+.+.+.++++++|+++|+
T Consensus 393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (733)
T PLN02925 393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472 (733)
T ss_pred ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence 88888899999999999999999999999999999999899999999999999999988877767788899999999998
Q ss_pred cccccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHH
Q 005248 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 560 (706)
Q Consensus 481 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r 560 (706)
+.|.++....|+++.+.++++.++....+...++..+|+++.++++++|.+++++.++++|+++..|....+.++++++|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R 552 (733)
T PLN02925 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR 552 (733)
T ss_pred ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence 76644443445555555777776654444555567799999999999999999999999999988222238899999999
Q ss_pred HHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCc
Q 005248 561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 640 (706)
Q Consensus 561 ~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kt 640 (706)
++++.|+++++++|+|||..|++....++.+|+||+++|+||+|||||||||+.++.+.++...+||+|||++|+|++||
T Consensus 553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kt 632 (733)
T PLN02925 553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKT 632 (733)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999998657889999999999999999999999999998777777789999999999999999
Q ss_pred eEeccCCCCcccccHHHHHHHHHHHhCCCCCCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 641 EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 641 e~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
|||||||||||+||||+++++|+++|+||||+||||||||||||||||||||||||+|||||+||+
T Consensus 633 e~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYv 698 (733)
T PLN02925 633 EYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV 698 (733)
T ss_pred eEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=100.00 E-value=9.3e-186 Score=1516.16 Aligned_cols=579 Identities=43% Similarity=0.686 Sum_probs=520.0
Q ss_pred cccccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC
Q 005248 79 SIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK 158 (706)
Q Consensus 79 s~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~ 158 (706)
|+|+|+||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++|+++|+++
T Consensus 2 ~~~~y~Rr~Tr~V~vG~v~iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~ 81 (611)
T PRK02048 2 DLFNYSRRKTSVVNIGATPLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQ 81 (611)
T ss_pred CccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 159 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 159 g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
|+++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||++|+|+|.+||++||++|+||||||
T Consensus 82 G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGv 161 (611)
T PRK02048 82 GYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGV 161 (611)
T ss_pred CCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCC
Q 005248 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 318 (706)
Q Consensus 239 N~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~ 318 (706)
||||||+|+++||||||+|||||||||+++||++||+||||||||||++.||+|||+|+++++++||+|||||||||||+
T Consensus 162 N~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~ 241 (611)
T PRK02048 162 NHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGD 241 (611)
T ss_pred CCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccc
Q 005248 319 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 398 (706)
Q Consensus 319 g~~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~ 398 (706)
+++|+||||+|||+||.||||||||||||++|++|+++|+.|||....+..+. .++..+...|||++|.||.+. .+.+
T Consensus 242 ~edg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~r~R~~~~-~~~~~~~~~f~~~~~~rR~~~-~~~~ 319 (611)
T PRK02048 242 GEDGRIKSAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYIRSRENHP-YIPGMEAPGFDYLSPSRRKTR-AVRN 319 (611)
T ss_pred CcCceehhHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHHHhhccCC-CCCcccCCCCCCCCccccccc-ceec
Confidence 99999999999999999999999999999999999999999999554443322 123233334699999999987 4445
Q ss_pred cCCccccccccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecC-CCCCCCchhHHHHHHHHhhcc
Q 005248 399 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLR-ELPSVDDHDARLALKRLVDIS 477 (706)
Q Consensus 399 ~g~~~~~~~v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~-~~~~~~~~~~~~~lk~~~~~~ 477 (706)
+|+ +..|+|.... ++. + ...++..++|+||++ ++|... ...+++++|++
T Consensus 320 igg--------~~~~~V~~~~----~~~-~-------------~~~~~~~~~D~i~~~~~~~~~~----~~~~~~~~~~~ 369 (611)
T PRK02048 320 IGG--------DHLPVVIADR----MDG-D-------------FEFDPQFLPDYIYAGRELPEQR----EPGVQYILDAD 369 (611)
T ss_pred cCC--------cccceEEeec----ccc-c-------------cccccCCCCceEeecccccccc----cccceEeeccc
Confidence 554 5566664442 111 0 112567899999999 555333 34556899999
Q ss_pred ccccccccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHH
Q 005248 478 MGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQ 557 (706)
Q Consensus 478 ~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~ 557 (706)
+|- + ....+|+ ++..++... ...++..+|+++.+++++++.+++++.++++|+++. |.+.++++
T Consensus 370 ~~~--~--~~~~~~~------~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~ 433 (611)
T PRK02048 370 VWK--E--EPNTWPA------FNYAQLELM--ETCAAELKFLFLPYMALTDEVLACLKAHPEVVVILQ----SNHPNRVG 433 (611)
T ss_pred ccc--c--cccceee------eehhhcccc--cccccccceEEeccCcccHHHHHHhhcCCceEEEEe----cCCcchHH
Confidence 883 1 1235663 444333211 111234499999999999999999999999999988 88899999
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCC-CChhhHhHHHHHHHHHhhcc
Q 005248 558 AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG-QDFDFLRDTSFNLLQGCRMR 636 (706)
Q Consensus 558 ~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~-~p~~ev~~~a~~ILqa~rlR 636 (706)
++|++++.|+++++++|+|||..|++ ...++.+|+||+++|+||+|||||+||++.++ .+.++++.++|+|||++|+|
T Consensus 434 ~~R~l~~~l~~~g~~~Pvi~~~~~~~-~~~~~~~i~aa~~~G~Ll~DGlgDgi~l~~~~~~~~~~~~~laf~ILQa~r~R 512 (611)
T PRK02048 434 EHRALAHQLMVAGLENPVIFFQHYAE-TTAEDLQLKAAADMGALIFDGLCDGIFLFNQGKLSHVVVDATAFGILQAGRLR 512 (611)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCC-CchHHHHHHHHHhhhHHHhCcccceEEEecCCCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998 57788999999999999999999999999875 56777789999999999999
Q ss_pred cCCceEeccCCCCcccccHHHHHHHHHHHhCCCCCCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 637 NTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 637 ~~kte~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
++||||||||||||||||||+|+++||++|+||||+||||||||||||||||||||||||+|||||+||+
T Consensus 513 ~sKTEyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNGPGEMADADfGYVG~gpgkI~LY~ 582 (611)
T PRK02048 513 TSKTEYISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYK 582 (611)
T ss_pred cccceEEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecCCchhhhcccceecCCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996
No 3
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=100.00 E-value=3.6e-184 Score=1494.20 Aligned_cols=570 Identities=44% Similarity=0.724 Sum_probs=489.3
Q ss_pred ccccccccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhh
Q 005248 76 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSL 155 (706)
Q Consensus 76 Yc~s~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L 155 (706)
-|+++++|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++|+++|
T Consensus 3 ~c~~~~~y~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L 82 (606)
T PRK00694 3 ATPCIQNAFRRKTHPVRIGNLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERL 82 (606)
T ss_pred ccccccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
+++|+++||||||||||++|++|+++++||||||||||+++|+|+.++||||||++||++|+++|.+||++||++|+|||
T Consensus 83 ~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 83 IQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred hccCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccc
Q 005248 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 315 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTE 315 (706)
|||||||||+|+++||||||+|||||||||+++||++||+|||||||||||++||+|||+|+++|++|||+|||||||||
T Consensus 163 IGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTE 242 (606)
T PRK00694 163 IGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTE 242 (606)
T ss_pred EecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCC-
Q 005248 316 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQL- 394 (706)
Q Consensus 316 AG~g~~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~- 394 (706)
||+|++|+||||+|||+||.||||||||||||+||++||+||++|+++..+...+. ..++|++|.||.+..
T Consensus 243 AG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~~~~~~~~--------~~~~pf~~~rR~~~~~ 314 (606)
T PRK00694 243 AGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHTTEYLELP--------EKDNPFALHHSEQFVS 314 (606)
T ss_pred CcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHHHHhhccC--------CCCCCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999555443433 135777888887652
Q ss_pred CccccCCccccccccccCCeeeeeccccccc-chhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHH
Q 005248 395 PIQKEGEEVDYRGVLHRDGSVLMSVSLDQLK-APELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRL 473 (706)
Q Consensus 395 ~~~~~g~~~~~~~v~~~~~~V~~~~~~~~l~-~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~ 473 (706)
.+.+.-+..|+++++ +++....+..++. .++.+|+.+..+...|. +|..++|.+.+...|..
T Consensus 315 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~~~~~~~~~~~~~~------------ 377 (606)
T PRK00694 315 ATRKTLKTTPWGNVY---GVFIKLTDVHLLTAEPEELLECLGIDPTTGK--KDFTTPEGVVVPKAMRS------------ 377 (606)
T ss_pred cceeecccCcccccc---chhhccccchhcccchhhhhhhcccccccCC--cccCCccceEEeccccc------------
Confidence 122222244554554 3333334444443 56677776666554444 56777777765542222
Q ss_pred hhccccccccccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCC
Q 005248 474 VDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKI 553 (706)
Q Consensus 474 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~ 553 (706)
+.+|- ++. ..+|+ ++..++. + +. +.+++....++...+ ++++. |.+.
T Consensus 378 --~~~~~--~~~--~~~~~------~~~~~~~------------~--~~--~~~~~~~~~~~~l~~-~~v~~----~~~~ 424 (606)
T PRK00694 378 --SPIVS--ELE--KHLLV------FHHHDVP------------C--LY--EMNEEIWLSEEVLSA-PFVHF----HATD 424 (606)
T ss_pred --hhhcc--ccc--cceee------echhhcc------------c--cc--cccHhhhhhhhhhcc-eeEec----ccCc
Confidence 22231 100 24443 2222111 0 00 111122222222233 44544 7778
Q ss_pred CcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHh
Q 005248 554 GRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGC 633 (706)
Q Consensus 554 s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~ 633 (706)
+.++++|++++.|+++ ++|+|||..+++. ..++.+|+||+++|+||+|||||+||++.++.+.++++.++|+|||++
T Consensus 425 ~~v~~~R~l~~~l~~~--~~Pvi~~~~~~~~-~~~~~~i~aa~~~G~Ll~DGlGDgi~l~~~~~~~~~~~~laf~ILQaa 501 (606)
T PRK00694 425 PFIHTARRFFSKRQHS--TQPVKLVFSLDPD-SKNEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVRTIAFGTLQSA 501 (606)
T ss_pred chHHHHHHHHHHHHhc--CCCEEEEEecCCC-chhHHHHHHHHHhhHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999984 8899999999985 778899999999999999999999999998778888889999999999
Q ss_pred hcccCCceEeccCCCCcccccHHHHHHHHHHHhCCCCCCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 634 RMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 634 rlR~~kte~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
|+|++|||||||||||||+||||+|+++||++|+||||+||||||||||||||||||||||||+|||||+||+
T Consensus 502 R~R~sKte~isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~kIaiMGCiVNGpGEmadAd~GyVG~gpgkI~LY~ 574 (606)
T PRK00694 502 GVRLVKTEYISCPGCGRTLFDLLEVTQRIRERTQHLPGLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYV 574 (606)
T ss_pred ccccccceEEECCCCCceeehHHHHHHHHHHHhccCCCceEEEEEeEecCCccccccccceecCCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=100.00 E-value=1.5e-135 Score=1067.56 Aligned_cols=332 Identities=52% Similarity=0.840 Sum_probs=284.6
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeec
Q 005248 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD 167 (706)
Q Consensus 88 Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVAD 167 (706)
||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++|||||||+||||+++|++|++|+++|+++|+++|||||
T Consensus 1 Tr~V~VG~v~IGG~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD 80 (359)
T PF04551_consen 1 TRQVRVGNVPIGGGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD 80 (359)
T ss_dssp ---EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE
T ss_pred CcEEEEcCEeecCCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhH
Q 005248 168 IHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (706)
Q Consensus 168 IHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~i 247 (706)
|||||++|++|+++++|||||||||+| +|++++..++++|++||++||++|+|||||||||||++++
T Consensus 81 IHFd~~lAl~a~~~v~kiRINPGNi~~-------------~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~ 147 (359)
T PF04551_consen 81 IHFDYRLALEAIEAVDKIRINPGNIVD-------------EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDI 147 (359)
T ss_dssp ESTTCHHHHHHHHC-SEEEE-TTTSS-----------------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHH
T ss_pred cCCCHHHHHHHHHHhCeEEECCCcccc-------------cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHH
Confidence 999999999999999999999999986 6889999999999999999999999999999999999999
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhH
Q 005248 248 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (706)
Q Consensus 248 l~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSa 327 (706)
++|||+||+||||||+||+++||++||+||+||+|+||++.|++|||+|+++ +||||||||||||++++|+||||
T Consensus 148 ~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~-----~dyPLHLGvTEAG~~~~g~IkSs 222 (359)
T PF04551_consen 148 LEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAER-----MDYPLHLGVTEAGTGEDGTIKSS 222 (359)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH-------S-EEEEBSSEESCHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHh-----cCCCeEEeecCCCCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccccCCcccccc
Q 005248 328 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRG 407 (706)
Q Consensus 328 vGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~~g~~~~~~~ 407 (706)
+|||+||.||||||||||||++|++|
T Consensus 223 igiG~LL~~GIGDTIRVSLt~~p~~E------------------------------------------------------ 248 (359)
T PF04551_consen 223 IGIGALLLDGIGDTIRVSLTGDPVEE------------------------------------------------------ 248 (359)
T ss_dssp HHHHHHHHTT--SEEEE-ECSSCCCH------------------------------------------------------
T ss_pred HHHHHHHHcCCCCEEEEECCCCchHH------------------------------------------------------
Confidence 99999999999999999998766441
Q ss_pred ccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHHhhcccccccccccc
Q 005248 408 VLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQ 487 (706)
Q Consensus 408 v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~~~~~~~~l~~~~~~ 487 (706)
T Consensus 249 -------------------------------------------------------------------------------- 248 (359)
T PF04551_consen 249 -------------------------------------------------------------------------------- 248 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHHHHHHHHH
Q 005248 488 LTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLS 567 (706)
Q Consensus 488 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~ 567 (706)
+
T Consensus 249 ----------------------------------------------------------V--------------------- 249 (359)
T PF04551_consen 249 ----------------------------------------------------------V--------------------- 249 (359)
T ss_dssp ----------------------------------------------------------H---------------------
T ss_pred ----------------------------------------------------------H---------------------
Confidence 0
Q ss_pred hcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCceEeccCC
Q 005248 568 ENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPS 647 (706)
Q Consensus 568 ~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kte~ISCPs 647 (706)
.+||+|||++|+|.+|+|||||||
T Consensus 250 --------------------------------------------------------~va~~IL~al~lR~~g~~~ISCPt 273 (359)
T PF04551_consen 250 --------------------------------------------------------KVAFEILQALGLRKRGPEIISCPT 273 (359)
T ss_dssp --------------------------------------------------------HHHHHHHHHTTSS-SS-EEEE---
T ss_pred --------------------------------------------------------HHHHHHHHHhCcCcCCceeeeCCC
Confidence 379999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHHhCCCC-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 648 CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 648 CGRTlfDLq~~~a~Ik~~t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
||||+||||+++++|+++|+|+| |+|||||||||||||||+||||||+|+|+|++.||+
T Consensus 274 CGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~ 333 (359)
T PF04551_consen 274 CGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFK 333 (359)
T ss_dssp -TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEEC
T ss_pred CCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEE
Confidence 99999999999999999999999 999999999999999999999999999999999996
No 5
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=100.00 E-value=1.5e-131 Score=1030.17 Aligned_cols=321 Identities=48% Similarity=0.772 Sum_probs=310.5
Q ss_pred CCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcce
Q 005248 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPL 164 (706)
Q Consensus 85 Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPL 164 (706)
||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++|||||||+||||+++|++|++|++ ++++||
T Consensus 1 Rr~tr~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~-----~~~iPl 75 (346)
T TIGR00612 1 RRKTRSVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE-----GTNVPL 75 (346)
T ss_pred CCcceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh-----CCCCCE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred eeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 165 VADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 165 VADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
||||||||++|+.|++. ++||||||||||+. ++|++||++||++|+|||||||||||
T Consensus 76 VADIHFd~~lAl~a~~~g~dkiRINPGNig~~----------------------e~v~~vv~~ak~~~ipIRIGVN~GSL 133 (346)
T TIGR00612 76 VADIHFDYRLAALAMAKGVAKVRINPGNIGFR----------------------ERVRDVVEKARDHGKAMRIGVNHGSL 133 (346)
T ss_pred EEeeCCCcHHHHHHHHhccCeEEECCCCCCCH----------------------HHHHHHHHHHHHCCCCEEEecCCCCC
Confidence 99999999999999997 99999999999983 48999999999999999999999999
Q ss_pred chhHHHhhC-CChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCC
Q 005248 244 SDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322 (706)
Q Consensus 244 ~~~il~ryg-dt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G 322 (706)
+++++++|| +||+|||||||+|+++||++||+||+||||||||++||+|||+|+++ +||||||||||||++.+|
T Consensus 134 ~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~-----~dyPLHlGVTEAG~~~~G 208 (346)
T TIGR00612 134 ERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAER-----SDYPLHLGVTEAGMGVKG 208 (346)
T ss_pred cHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhh-----CCCCceeccccCCCCCCc
Confidence 999999999 79999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred chhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccccCCc
Q 005248 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEE 402 (706)
Q Consensus 323 ~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~~g~~ 402 (706)
+||||+|||+||++|||||||||||+||++||+||
T Consensus 209 ~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va--------------------------------------------- 243 (346)
T TIGR00612 209 IVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVA--------------------------------------------- 243 (346)
T ss_pred hhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999998765431
Q ss_pred cccccccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHHhhccccccc
Q 005248 403 VDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVIT 482 (706)
Q Consensus 403 ~~~~~v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~~~~~~~~l~ 482 (706)
T Consensus 244 -------------------------------------------------------------------------------- 243 (346)
T TIGR00612 244 -------------------------------------------------------------------------------- 243 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHHHH
Q 005248 483 PLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRL 562 (706)
Q Consensus 483 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r~~ 562 (706)
T Consensus 244 -------------------------------------------------------------------------------- 243 (346)
T TIGR00612 244 -------------------------------------------------------------------------------- 243 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCceE
Q 005248 563 FEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEY 642 (706)
Q Consensus 563 ~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kte~ 642 (706)
|+|||++|||.+++++
T Consensus 244 ----------------------------------------------------------------~~IL~slglr~~g~~i 259 (346)
T TIGR00612 244 ----------------------------------------------------------------FEILQSLGLRARGVEI 259 (346)
T ss_pred ----------------------------------------------------------------HHHHHHcCCCcCCCeE
Confidence 4788888999999999
Q ss_pred eccCCCCcccccHHHHHHHHHHHhCCCC-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 643 VSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 643 ISCPsCGRTlfDLq~~~a~Ik~~t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
|||||||||.|||.++++++++++.|++ ++|||||||+|||||||+||||||+|+|+|...||+
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~ 324 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFK 324 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEE
Confidence 9999999999999999999999999998 999999999999999999999999999899998985
No 6
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=100.00 E-value=9e-130 Score=1013.32 Aligned_cols=323 Identities=47% Similarity=0.779 Sum_probs=312.6
Q ss_pred cCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCc
Q 005248 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (706)
Q Consensus 83 ~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~i 162 (706)
.+||+||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++|||||||||||++++|+|+++|+++ .++
T Consensus 1 ~~Rrktr~v~VG~V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~-----~~v 75 (361)
T COG0821 1 IPRRKTRQVKVGNVPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQR-----LNV 75 (361)
T ss_pred CCcccceeEEECCEeecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh-----CCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999997 589
Q ss_pred ceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCC
Q 005248 163 PLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (706)
Q Consensus 163 PLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~G 241 (706)
||||||||||++|+.++++ ++|+||||||||+++ +|+++|++||++|+|||||||||
T Consensus 76 PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~----------------------~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 76 PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKD----------------------RVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHH----------------------HHHHHHHHHHHcCCCEEEecccC
Confidence 9999999999999999998 999999999999843 89999999999999999999999
Q ss_pred CCchhHHHhhC-CChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248 242 SLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (706)
Q Consensus 242 SL~~~il~ryg-dt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~ 320 (706)
||++++++||| +||||||||||+++++||++||+||+||||+|||++||+|||+||++ +||||||||||||+++
T Consensus 134 SLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~-----~dyPLHLGvTEAG~~~ 208 (361)
T COG0821 134 SLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKR-----CDYPLHLGVTEAGMGF 208 (361)
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHh-----cCCCcccceecccCcc
Confidence 99999999996 89999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhccCCcchhhhcccchhhhhhccCCCCccccC
Q 005248 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 400 (706)
Q Consensus 321 ~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~rr~t~~~~~~~g 400 (706)
+|+||||+|||.||++|||||||||||+||++||+||++
T Consensus 209 ~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~e----------------------------------------- 247 (361)
T COG0821 209 KGIVKSAAALGALLSEGIGDTIRVSLTADPVEEVKVAQE----------------------------------------- 247 (361)
T ss_pred cceehHHHHHHHHHHhcCCceEEEecCCCchhhhHHHHH-----------------------------------------
Confidence 999999999999999999999999999999999887310
Q ss_pred CccccccccccCCeeeeecccccccchhhHhhhhhhhhhhCCCCCCcCCcceEecCCCCCCCchhHHHHHHHHhhccccc
Q 005248 401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480 (706)
Q Consensus 401 ~~~~~~~v~~~~~~V~~~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~~~~~~~~~ 480 (706)
T Consensus 248 -------------------------------------------------------------------------------- 247 (361)
T COG0821 248 -------------------------------------------------------------------------------- 247 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCccchhhhhhhhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHH
Q 005248 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 560 (706)
Q Consensus 481 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r 560 (706)
+
T Consensus 248 -----------------------------------------------------------------I-------------- 248 (361)
T COG0821 248 -----------------------------------------------------------------I-------------- 248 (361)
T ss_pred -----------------------------------------------------------------H--------------
Confidence 1
Q ss_pred HHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCc
Q 005248 561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 640 (706)
Q Consensus 561 ~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kt 640 (706)
||++|+|.+++
T Consensus 249 ---------------------------------------------------------------------LqslglR~~~v 259 (361)
T COG0821 249 ---------------------------------------------------------------------LQSLGLRSRGV 259 (361)
T ss_pred ---------------------------------------------------------------------HHHhCccccCc
Confidence 99999999999
Q ss_pred eEeccCCCCcccccHHHHHHHHHHHhCCCC-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 641 EYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 641 e~ISCPsCGRTlfDLq~~~a~Ik~~t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
+||||||||||+|||.++++++++++.|++ ++|||||||||||||||+|||+||+|++++.+.+|+
T Consensus 260 ~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~ 326 (361)
T COG0821 260 EVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFV 326 (361)
T ss_pred eEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEE
Confidence 999999999999999999999999999999 899999999999999999999999999999998885
No 7
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=100.00 E-value=5.7e-125 Score=986.89 Aligned_cols=246 Identities=49% Similarity=0.768 Sum_probs=238.2
Q ss_pred ccccCCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCC
Q 005248 80 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKN 159 (706)
Q Consensus 80 ~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g 159 (706)
...+.||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++|||||||+||||+++|++|++|+++
T Consensus 4 ~~~~~Rr~tr~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~----- 78 (360)
T PRK00366 4 STPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQ----- 78 (360)
T ss_pred ccccccccceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHc-----
Confidence 345679999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 160 YNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 160 ~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
+++||||||||||++|++|+++ +|||||||||||+. +++|++||++||++|+||||||
T Consensus 79 ~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~---------------------~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 79 LPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKR---------------------DERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred CCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCch---------------------HHHHHHHHHHHHHCCCCEEEec
Confidence 7999999999999999999998 99999999999762 3589999999999999999999
Q ss_pred CCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccC
Q 005248 239 NHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (706)
Q Consensus 239 N~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG 317 (706)
|||||+++++++||+ ||+|||||||+|+++||++||+||+||||||||++||+|||+|+++ +||||||||||||
T Consensus 138 N~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~-----~dyPLHlGvTEAG 212 (360)
T PRK00366 138 NAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR-----CDYPLHLGVTEAG 212 (360)
T ss_pred CCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc-----CCCCceecccCCC
Confidence 999999999999995 9999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchH
Q 005248 318 EGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDP 356 (706)
Q Consensus 318 ~g~~G~IKSavGiG~LL~dGIGDTIRVSLT~dP~~EV~v 356 (706)
++.+|+||||+|||+||.+|||||||||||+||++||+|
T Consensus 213 ~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~v 251 (360)
T PRK00366 213 MGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKV 251 (360)
T ss_pred CCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHH
Confidence 999999999999999999999999999999999998776
No 8
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=99.77 E-value=4.4e-19 Score=196.92 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCC-----CCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhH
Q 005248 550 EDKIGRVQAARRLFEYLSENNLN-----FPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRD 624 (706)
Q Consensus 550 S~k~s~v~~~r~~~~~l~~~~~~-----~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~ 624 (706)
|.|+|++..++++|++|++ ..+ ||| |||+||||++++|.||||+|||+||.||||||||||||++|++|| .
T Consensus 207 S~KsSnv~~mi~AyrlLa~-~~d~eg~~YPL--HLGVTEAG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~dP~~Ev-~ 282 (606)
T PRK00694 207 SMKSSNPKVMVAAYRQLAK-DLDARGWLYPL--HLGVTEAGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEI-P 282 (606)
T ss_pred EEEcCCHHHHHHHHHHHHH-HhhccCCCcCc--eeccccCcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCChHHHH-H
Confidence 5667999999999999986 556 999 999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHhhcccC
Q 005248 625 TSFNLLQGCRMRNT 638 (706)
Q Consensus 625 ~a~~ILqa~rlR~~ 638 (706)
+|+.||+...-|..
T Consensus 283 va~~ll~~~~~~~~ 296 (606)
T PRK00694 283 VCISLLKHTTEYLE 296 (606)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999877754
No 9
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=99.75 E-value=1.4e-18 Score=183.57 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=67.7
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhH
Q 005248 550 EDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFL 622 (706)
Q Consensus 550 S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev 622 (706)
|.|+|+|..++++|++|++ .+|||| |+|+||||+..+|+||||+|+|+||.||||||||||||++|++||
T Consensus 171 S~KsSdv~~~i~ayr~la~-~~dyPL--HlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV 240 (346)
T TIGR00612 171 SMKASDVAETVAAYRLLAE-RSDYPL--HLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDPTHEV 240 (346)
T ss_pred EEEcCCHHHHHHHHHHHHh-hCCCCc--eeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCcHHHH
Confidence 6677999999999999998 899999 999999999999999999999999999999999999999999987
No 10
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.75 E-value=1e-18 Score=185.56 Aligned_cols=152 Identities=30% Similarity=0.580 Sum_probs=145.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHH
Q 005248 550 EDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNL 629 (706)
Q Consensus 550 S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~I 629 (706)
|.|+|++..++++|++|++ .+|||| |+|+||||+..+|+||||+|+|+||.||||||||||||++|++|| ++||+|
T Consensus 180 S~KsS~v~~~i~ayrlla~-~~dyPL--HlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV-~va~~I 255 (360)
T PRK00366 180 SVKASDVQDLIAAYRLLAK-RCDYPL--HLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEV-KVGQEI 255 (360)
T ss_pred EEEcCCHHHHHHHHHHHHh-cCCCCc--eecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHH-HHHHHH
Confidence 6677999999999999998 899999 999999999999999999999999999999999999999999999 799999
Q ss_pred HHHhhcccCCceEeccCCCCcccccHHHHHHHHHHHhCCCC-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 630 LQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 630 Lqa~rlR~~kte~ISCPsCGRTlfDLq~~~a~Ik~~t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
||++|||.++++++|||||||+.+|++.+++++++++.+++ ++|||||||+||||||+++||||++|+.+ +..+|+
T Consensus 256 L~slglr~~g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~-~~~vf~ 332 (360)
T PRK00366 256 LQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNP-KGPVFV 332 (360)
T ss_pred HHHcCCccCCCeEEECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCC-ceEEEE
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999854 455664
No 11
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=99.75 E-value=2.6e-18 Score=191.87 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=89.1
Q ss_pred CCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCC
Q 005248 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (706)
Q Consensus 538 ~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~ 617 (706)
+.+|++++ +|+..+.+.++|.+.+.|.+.+++||| |+|+||||+.++|+||||+|+|+||+||||||||||++.+
T Consensus 198 ~diviS~K---sS~~~~~V~AyRlLa~~l~~~g~dyPL--HLGvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 272 (611)
T PRK02048 198 TDVVISIK---ASNTVVMVRTVRLLVAVMEAEGMHYPL--HLGVTEAGDGEDGRIKSAVGIGALLADGIGDTIRVSLSEE 272 (611)
T ss_pred CcEEEEEE---eCCcHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEeCCCC
Confidence 46888888 788888888888888888888999999 9999999999999999999999999999999999999999
Q ss_pred ChhhHhHHHHHHHHHhhcccCC
Q 005248 618 DFDFLRDTSFNLLQGCRMRNTK 639 (706)
Q Consensus 618 p~~ev~~~a~~ILqa~rlR~~k 639 (706)
|++|+ .+||+|||+.|.|...
T Consensus 273 P~~Ev-~vAf~ILQa~r~R~~~ 293 (611)
T PRK02048 273 PEAEI-PVARKLVDYIRSRENH 293 (611)
T ss_pred hHHHH-HHHHHHHHHHHhhccC
Confidence 99999 7999999999999863
No 12
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=99.72 E-value=4e-18 Score=179.59 Aligned_cols=115 Identities=16% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCChhhHhHHHHHH
Q 005248 550 EDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNL 629 (706)
Q Consensus 550 S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~~ev~~~a~~I 629 (706)
|.|+|+|+.++++|++|++ .+|||| |||+||||+...|+||||+++|.||.+|||||||||||++|++|| ++
T Consensus 173 S~K~Sdv~~~v~aYr~lA~-~~dyPL--HLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV-~V---- 244 (361)
T COG0821 173 SVKASDVQLMVAAYRLLAK-RCDYPL--HLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTADPVEEV-KV---- 244 (361)
T ss_pred EEEcCCHHHHHHHHHHHHH-hcCCCc--ccceecccCcccceehHHHHHHHHHHhcCCceEEEecCCCchhhh-HH----
Confidence 7788999999999999999 999999 999999999999999999999999999999999999999999998 23
Q ss_pred HHHhhcccCCc--eEeccCCCCcccccHHHHHHHHHHHhCCCCCCe
Q 005248 630 LQGCRMRNTKT--EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVS 673 (706)
Q Consensus 630 Lqa~rlR~~kt--e~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglk 673 (706)
-|.. |...+. .-+-=-+|-.|-=-..++.+.+++....+..++
T Consensus 245 ~~eI-LqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~ 289 (361)
T COG0821 245 AQEI-LQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLK 289 (361)
T ss_pred HHHH-HHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccC
Confidence 2322 111111 222234454444444455555555555554443
No 13
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=99.64 E-value=1.4e-16 Score=169.70 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCCCh
Q 005248 550 EDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDF 619 (706)
Q Consensus 550 S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~p~ 619 (706)
|.|+|++..++++|++|++ .+|||| |+|+||||+..+|+||||+++|+||.||||||||||++++|+
T Consensus 180 SlKsSdv~~~i~ayr~la~-~~dyPL--HLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~ 246 (359)
T PF04551_consen 180 SLKSSDVPETIEAYRLLAE-RMDYPL--HLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPV 246 (359)
T ss_dssp EEEBSSHHHHHHHHHHHHH-H--S-E--EEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCC
T ss_pred EEEeCChHHHHHHHHHHHH-hcCCCe--EEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCch
Confidence 5667999999999999999 899999 999999999999999999999999999999999999998876
No 14
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=99.58 E-value=3.4e-15 Score=169.13 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=76.5
Q ss_pred CCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCCC
Q 005248 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (706)
Q Consensus 538 ~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~~ 617 (706)
+.+||+++ +|+-...+.++|.+++.|.+++++||| |+|+||||+.++|+||||+++|+||+||||||||||++++
T Consensus 267 ~diviS~K---sSn~~~~V~AyR~La~~L~~~g~~yPL--hLgvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 341 (733)
T PLN02925 267 HNFVFSMK---ASNPVVMVQAYRLLVAEMYVLGWDYPL--HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEP 341 (733)
T ss_pred CcEEEEEE---cCChHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEECCCC
Confidence 35677766 555555566666666666666899999 9999999999999999999999999999999999999999
Q ss_pred ChhhHhHHHHHHHHHh
Q 005248 618 DFDFLRDTSFNLLQGC 633 (706)
Q Consensus 618 p~~ev~~~a~~ILqa~ 633 (706)
|++|| .+|+.|+.-.
T Consensus 342 P~~Ev-pva~~Lv~~~ 356 (733)
T PLN02925 342 PEEEI-DPCRRLANLG 356 (733)
T ss_pred chhhc-hHHHHHHHHH
Confidence 99999 6999998754
No 15
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=98.42 E-value=1.6e-05 Score=88.52 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=153.4
Q ss_pred ccccccCCCCceeEEEce----eecCCC-----------CceEEEeccCCCCCCHHHHHHHHHHH-----HHcC----CC
Q 005248 78 ESIHKTVRRKTRTVMVGN----VAIGSE-----------HPIRVQTMTTNDTKDVAGTVEEVMRI-----ADQG----AD 133 (706)
Q Consensus 78 ~s~~~~~Rr~Tr~V~VG~----v~IGG~-----------~PI~VQSMt~t~T~Dv~atv~Qi~~L-----~~aG----ce 133 (706)
+.+-....-+-|+|.||. ++|||+ ||.+|=-.- .|+.+-++-.+.++.+ ++.| +|
T Consensus 51 ~~l~~~~~ppi~~V~iG~G~~~~~iGGEtvL~rhe~tf~np~~Ia~eI-~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD 129 (450)
T PRK04165 51 EKLEEASAPPIREVKIGTGERAVKIGGETVLYRHEKTFFNPTGIAVDV-SDTMDDEEIDARLKKINNFQFERVGEILKLD 129 (450)
T ss_pred HHHHHHhCCCceeeeecCCCeEEEECCcceeeecCcCCCCCCEEEEEE-eCCCChHHHHHHHHHhhcchHhhhcccccCC
Confidence 345555566778999984 889995 676665555 7888888888888888 7777 99
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCcee--eCCCCCCcchhhccccccchHHHHH
Q 005248 134 LVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQK 211 (706)
Q Consensus 134 iVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiR--INPGNig~~~k~F~~~~YtdeeY~~ 211 (706)
+|-|-..+. +.+.+..+.+.+.+ .+++||+-|- ||+..+.+|++.....| ||.-|.
T Consensus 130 ~IaL~~~s~-dp~~v~~~Vk~V~~-~~dvPLSIDT-~dpevleaAleagad~~plI~Sat~------------------- 187 (450)
T PRK04165 130 MVALRNASG-DPEKFAKAVKKVAE-TTDLPLILCS-EDPAVLKAALEVVADRKPLLYAATK------------------- 187 (450)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHH-hcCCCEEEeC-CCHHHHHHHHHhcCCCCceEEecCc-------------------
Confidence 999988665 33344444444443 2689999998 99999999999854433 555442
Q ss_pred HHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHH
Q 005248 212 ELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 291 (706)
Q Consensus 212 El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ 291 (706)
+++..+.+.|+++|.|+ |... . . ++++.+.++.|++.|+.||++.-=..+....++
T Consensus 188 ------dN~~~m~~la~~yg~pv-Vv~~-----~----------d--l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~ 243 (450)
T PRK04165 188 ------ENYEEMAELAKEYNCPL-VVKA-----P----------N--LEELKELVEKLQAAGIKDLVLDPGTENIKETLD 243 (450)
T ss_pred ------chHHHHHHHHHHcCCcE-EEEc-----h----------h--HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHH
Confidence 25667999999999999 2211 0 1 788899999999999999999877776777777
Q ss_pred HHHHHHHh---hhcCCCCCcccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEe
Q 005248 292 AYRLLVAE---MYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVS 345 (706)
Q Consensus 292 ayrlla~~---~~~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~dGIGDTIRVS 345 (706)
-|.++... ..-+...||+=.|++++-. .+...=++--++++..| ||-+-++
T Consensus 244 ~~~~iRr~Al~~~~~~lgyPil~~~s~k~~--~~~~~E~~~As~~~~ky-a~i~Vl~ 297 (450)
T PRK04165 244 DFVQIRRAAIKKGDRPLGYPIIAFPIEAWM--SDPMKEAAIASTLIAKY-ADILVLH 297 (450)
T ss_pred HHHHHHhhhhhcccccCCCCEEEcchhhcc--cchHHHHHHHHHHHHhC-CcEEEEc
Confidence 67655443 2344467999999998776 34444444444444444 4444444
No 16
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=97.59 E-value=0.0057 Score=63.76 Aligned_cols=195 Identities=15% Similarity=0.226 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----C------CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITV----Q------GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD 183 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv----~------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ 183 (706)
+.|.+..++++.++.++|++++=|=. | -.++.+.+..+.+.|++ .+++||.-|. |+|.++.+|++.-.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~-~~~~plSIDT-~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRG-ELDVLISVDT-FRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCcEEEeC-CCHHHHHHHHHhCC
Confidence 46899999999999999999999942 2 23455555555555553 3589999996 78999999998721
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhH--HHhhCCChHHHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVES 261 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~i--l~rygdt~eamVeS 261 (706)
.+ ||-=+-... + ..+.+.++++|.++=+--+.| .+... ...|.|..+.+++.
T Consensus 98 ~i-INdisg~~~-----------------------~-~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 98 DI-INDVSGGSD-----------------------D-PAMLEVAAEYGAPLVLMHMRG-TPKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred CE-EEeCCCCCC-----------------------C-hHHHHHHHHcCCCEEEECCCC-CCcccccCCCcccHHHHHHHH
Confidence 12 554333211 1 346788889999985533334 44332 23355667899999
Q ss_pred HHHHHHHHHHCCCC--cEEEE-----Eec-CChhHHHHHHHHHHHhhhcCCCCCcccccc---------cccCCCCCCch
Q 005248 262 AFEFARICRKLDFH--NFLFS-----MKA-SNPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRM 324 (706)
Q Consensus 262 Ale~~~i~e~~~f~--~iviS-----~Ka-Snv~~~i~ayrlla~~~~~eg~~YPLHLGV---------TEAG~g~~G~I 324 (706)
+.+.++.|++.|+. +|++- .|+ ..-..+++.++.|.+. ++|+-+|+ ||- ....|.
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~------~~pil~G~SrkSfig~~~~~--~~~~r~ 223 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQL------GLPVLVGASRKSFIGALLGR--EPKDRD 223 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhC------CCcEEEEecccHHHHHhcCC--Cccccc
Confidence 99999999999995 87763 233 1124457777777754 89999998 653 334566
Q ss_pred hhHHHHHH-HhhcCCCceeEEe
Q 005248 325 KSAIGIGT-LLQDGLGDTIRVS 345 (706)
Q Consensus 325 KSavGiG~-LL~dGIGDTIRVS 345 (706)
-.++++.. +.+.| .|=|||-
T Consensus 224 ~~t~~~~~~~~~~G-a~iiRvH 244 (257)
T cd00739 224 WGTLALSALAAANG-ADIVRVH 244 (257)
T ss_pred hhHHHHHHHHHHcC-CCEEEeC
Confidence 66666655 55666 4888864
No 17
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.43 E-value=0.0088 Score=62.32 Aligned_cols=202 Identities=18% Similarity=0.289 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CC------HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITV----QG------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv----~~------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ 183 (706)
.|.+..++++.++.++|++++=|-. |+ .+|.+.+..+.+.+++ ..++||..|-+ ++..+.+|++. ++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~-~~~~plsiDT~-~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRD-QPDVPISVDTY-RAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEeCC-CHHHHHHHHHcCCC
Confidence 5789999999999999999999942 22 2344556666665543 34799999985 58888888886 22
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhH--HHhhCCChHHHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVES 261 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~i--l~rygdt~eamVeS 261 (706)
=||-.+... . .++++.++++|.++=+--+.| .++.. ...|.|..+.+.+.
T Consensus 98 --iINsis~~~-~------------------------~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 98 --IINDVSGGQ-D------------------------PAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred --EEEECCCCC-C------------------------chhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHH
Confidence 278776642 1 235667889999986644444 33321 12355566889999
Q ss_pred HHHHHHHHHHCCC--CcEEEEE-----ecC-ChhHHHHHHHHHHHhhhcCCCCCcccccc---------cccCCCCCCch
Q 005248 262 AFEFARICRKLDF--HNFLFSM-----KAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRM 324 (706)
Q Consensus 262 Ale~~~i~e~~~f--~~iviS~-----KaS-nv~~~i~ayrlla~~~~~eg~~YPLHLGV---------TEAG~g~~G~I 324 (706)
+.+.++.|++.|+ +||+|.- |+. .-..+++.++.|.+ ..+|+-+|+ ||- ...-+.
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~------~~~p~l~G~SrkSfig~v~~~--~~~~r~ 221 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVA------LGYPLLVGASRKSFIGALLGT--PPEERL 221 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHh------CCCcEEEEecccHHHHhhcCC--Chhhhh
Confidence 9999999999999 6888753 421 12345566666654 469999998 553 333455
Q ss_pred hhHHHHH-HHhhcCCCceeEEecCCCCcccchHHHHHHH
Q 005248 325 KSAIGIG-TLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 362 (706)
Q Consensus 325 KSavGiG-~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~ 362 (706)
-.++++. .+.+.|. |-||+ ++|+-+++.++
T Consensus 222 ~~t~~~~~~a~~~Ga-~iiR~-------Hdv~~~~~~~~ 252 (257)
T TIGR01496 222 EGTLAASAYAVQKGA-DIVRV-------HDVKETRDALK 252 (257)
T ss_pred HHHHHHHHHHHHcCC-CEEEe-------CCHHHHHHHHH
Confidence 5555554 4566665 78885 45555555554
No 18
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=97.32 E-value=0.033 Score=63.48 Aligned_cols=228 Identities=15% Similarity=0.136 Sum_probs=151.3
Q ss_pred eEEEceeecCCCC-ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcCcceeec
Q 005248 90 TVMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVAD 167 (706)
Q Consensus 90 ~V~VG~v~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~-~~A~al~~I~~~L~~~g~~iPLVAD 167 (706)
...||++.||+.. |++|=..-.-.+. .+..++++.++.++|+||+=|-..+. ..++.+..+.+.|++. +++|+.-|
T Consensus 137 ~~~i~~~~i~~~~p~~~v~aEI~~a~~-l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~-~~~pISID 214 (499)
T TIGR00284 137 DFRIGSLKIPLKPPPLRVVAEIPPTVA-EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDA-LDSPVIAD 214 (499)
T ss_pred hhhccCcCCCCCCCCeEEEEEEcCCcc-hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhh-CCCcEEEe
Confidence 4788999999999 6999988653332 28899999999999999999976533 3444455555555543 47999999
Q ss_pred cCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 168 IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 168 IHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
- |++..+.+|+++ ++ =||--+-+ ++..+.+.|+++|.++ |.+ |-.-
T Consensus 215 T-~~~~v~eaAL~aGAd--iINsVs~~-------------------------~~d~~~~l~a~~g~~v-Vlm-~~~~--- 261 (499)
T TIGR00284 215 T-PTLDELYEALKAGAS--GVIMPDVE-------------------------NAVELASEKKLPEDAF-VVV-PGNQ--- 261 (499)
T ss_pred C-CCHHHHHHHHHcCCC--EEEECCcc-------------------------chhHHHHHHHHcCCeE-EEE-cCCC---
Confidence 7 679999999986 33 26622211 3345778899999998 444 2110
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEe----cCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCC--C
Q 005248 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK----ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG--E 320 (706)
Q Consensus 247 il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~K----aSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g--~ 320 (706)
+.-.++..+.++.|++.|+.+|++--= .......+++|+.+.++ ..+|+=+|+..--.. .
T Consensus 262 ---------~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~~-----~~~Pil~GvSNvtel~da 327 (499)
T TIGR00284 262 ---------PTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRRASRL-----LNVPLVFGAANVTELVDA 327 (499)
T ss_pred ---------CchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHHHHHh-----cCCcEEEeeccccCCCcc
Confidence 111278888899999999988776322 22244556788877666 579999998533211 1
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecC----CCCcccchHHHHHHHhhhhh
Q 005248 321 DGRMKSAIGIGTLLQDGLGDTIRVSLT----EPPEKEIDPCRRLANLGMRA 367 (706)
Q Consensus 321 ~G~IKSavGiG~LL~dGIGDTIRVSLT----~dP~~EV~va~~l~~~~~r~ 367 (706)
|-.--+++-.+...+.|+ +-|||.=. --.+.|...|.++.....+.
T Consensus 328 Ds~g~naal~~~a~e~Ga-~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~~ 377 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGA-SILYVVEDSYKSYRSTAEAAEAAKMASAARKL 377 (499)
T ss_pred chhHHHHHHHHHHHHcCC-CEEEEcCCcccccccHHHHHHHHHHHHHHHhc
Confidence 222234444455556676 67777521 11277888888887755544
No 19
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=97.21 E-value=0.041 Score=56.98 Aligned_cols=209 Identities=20% Similarity=0.245 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~----------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~k 184 (706)
.|.++.++++.++.++|++|+=|=..+ .++.+.+..+.+.|++ .+++||.-|- |++.++.+|++....
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~-~~~~piSIDT-~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAG-EPDVPISVDT-FNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHh-cCCCeEEEeC-CcHHHHHHHHHhCCC
Confidence 589999999999999999999886533 3556666666666653 3479998886 789999999987522
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCc-hhHHHhhCCChHHHHHHHH
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~-~~il~rygdt~eamVeSAl 263 (706)
+ ||-=+-... . ..+++.++++|.++=+-.+.|.=. ..-...|.++.+.+++.+.
T Consensus 99 i-INdis~~~~-----------------------~-~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T cd00423 99 I-INDVSGGRG-----------------------D-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLE 153 (258)
T ss_pred E-EEeCCCCCC-----------------------C-hHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHH
Confidence 3 665433211 0 347788999999986655444211 0113446778899999999
Q ss_pred HHHHHHHHCCC--CcEEE-----EEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC-------CCchh-hHH
Q 005248 264 EFARICRKLDF--HNFLF-----SMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE-------DGRMK-SAI 328 (706)
Q Consensus 264 e~~~i~e~~~f--~~ivi-----S~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~-------~G~IK-Sav 328 (706)
+.++.|++.|+ ++|++ -.| +...-....|.+..- .+. ..||+-+|+.==..+. .-|.- +++
T Consensus 154 ~~i~~~~~~Gi~~~~IilDPg~g~~k--~~~~~~~~l~~i~~~-~~~-~g~Pil~G~Snksf~~~~~~~~~~~R~~~t~a 229 (258)
T cd00423 154 ERVEAATEAGIPPEDIILDPGIGFGK--TEEHNLELLRRLDAF-REL-PGLPLLLGVSRKSFLGDLLSVGPKDRLAGTAA 229 (258)
T ss_pred HHHHHHHHcCCCHHHEEEeCCCCccC--CHHHHHHHHHHHHHH-Hhc-CCCcEEEEeccchhhcccCCCChHHhhHHHHH
Confidence 99999999995 68887 346 333333344444322 111 3799999974333332 22333 555
Q ss_pred HHHHHhhcCCCceeEEecCCCCcccchHHHH
Q 005248 329 GIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR 359 (706)
Q Consensus 329 GiG~LL~dGIGDTIRVSLT~dP~~EV~va~~ 359 (706)
.+......| -|-+||- |+.|..-+.+
T Consensus 230 ~~~~a~~~G-~~~~rvh----~v~~~~~a~~ 255 (258)
T cd00423 230 FLAAAILNG-ADIVRVH----DVKELRDAIK 255 (258)
T ss_pred HHHHHHHcC-CCEEEEC----CCHHHHHHHH
Confidence 566677888 6888874 4555544433
No 20
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=96.98 E-value=0.048 Score=59.13 Aligned_cols=179 Identities=20% Similarity=0.284 Sum_probs=119.3
Q ss_pred CceeEEE-c----eeecCCCCce--E----------EEeccCCCCCC------HHHHHHHH--------HHHH-HcCCCE
Q 005248 87 KTRTVMV-G----NVAIGSEHPI--R----------VQTMTTNDTKD------VAGTVEEV--------MRIA-DQGADL 134 (706)
Q Consensus 87 ~Tr~V~V-G----~v~IGG~~PI--~----------VQSMt~t~T~D------v~atv~Qi--------~~L~-~aGcei 134 (706)
+-|+|.+ | .++|||+.-. - +=.|.=+|+.+ +.+-++.+ ++.. ++|+|+
T Consensus 13 ~I~eV~igG~g~~~v~iGGe~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~ 92 (319)
T PRK04452 13 KIREVTLGGTGPKTVKLGGETALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADM 92 (319)
T ss_pred ceEEEEEeeecceeEEECCcccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCE
Confidence 4578999 5 4889997543 1 01232334433 44444444 3444 899999
Q ss_pred EEEec----CCH--H----HHHHHHHHHHhhccCCcCcceeeccCC----CHHHHHHHhhhcCcee--eCCCCCCcchhh
Q 005248 135 VRITV----QGK--R----EADACFEIKNSLVQKNYNIPLVADIHF----APSVALRVAECFDKIR--VNPGNFADRRAQ 198 (706)
Q Consensus 135 VRvtv----~~~--~----~A~al~~I~~~L~~~g~~iPLVADIHF----~~~~Al~a~~~~~kiR--INPGNig~~~k~ 198 (706)
|-|-. |+. + -++.++.+.+ .+++||+-|.=+ |+.+..+|++.+..=| ||+=|.
T Consensus 93 Idl~~~s~dp~~~d~~~~e~~~~Vk~V~e-----avd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~------ 161 (319)
T PRK04452 93 ITLHLISTDPNGKDKSPEEAAKTVEEVLQ-----AVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE------ 161 (319)
T ss_pred EEEECCCCCcccccchHHHHHHHHHHHHH-----hCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH------
Confidence 98874 321 1 3334444433 599999999999 7999989999866323 555442
Q ss_pred ccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCc-hhHHHhhCCChHHHHHHHHHHHHHHHHCCC--C
Q 005248 199 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDF--H 275 (706)
Q Consensus 199 F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~-~~il~rygdt~eamVeSAle~~~i~e~~~f--~ 275 (706)
|+++.+.+.|++||.++ .+ ++ ++ ++-|.+-.+.+.++|+ +
T Consensus 162 -------------------en~~~i~~lA~~y~~~V--va----~s~~D------------ln~ak~L~~~l~~~Gi~~e 204 (319)
T PRK04452 162 -------------------DNYKKIAAAAMAYGHAV--IA----WSPLD------------INLAKQLNILLTELGVPRE 204 (319)
T ss_pred -------------------HHHHHHHHHHHHhCCeE--EE----EcHHH------------HHHHHHHHHHHHHcCCCHH
Confidence 26888999999999988 33 22 22 7788899999999999 9
Q ss_pred cEEEEEecC----C---hhHHHHHHHHHHHhhhcCCCCCccccccc
Q 005248 276 NFLFSMKAS----N---PVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (706)
Q Consensus 276 ~iviS~KaS----n---v~~~i~ayrlla~~~~~eg~~YPLHLGVT 314 (706)
||+|--=.. + ....++.-|++|=+ ..+...||.=-+++
T Consensus 205 dIviDP~~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l~~P~i~~~~ 249 (319)
T PRK04452 205 RIVMDPTTGALGYGIEYSYSVMERIRLAALK-GDEMLQMPMISGVG 249 (319)
T ss_pred HEEEeCCcccccCCHHHHHHHHHHHHHHHhc-CCCcCCCCeEecch
Confidence 999865444 3 34456677777765 45556799988888
No 21
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=96.92 E-value=0.047 Score=60.52 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=128.1
Q ss_pred CceeEEEc----------eeecCCCCceEE----------EeccCCCC--CC----HHHHHHHHH---------HHHHcC
Q 005248 87 KTRTVMVG----------NVAIGSEHPIRV----------QTMTTNDT--KD----VAGTVEEVM---------RIADQG 131 (706)
Q Consensus 87 ~Tr~V~VG----------~v~IGG~~PI~V----------QSMt~t~T--~D----v~atv~Qi~---------~L~~aG 131 (706)
+-|+|.+| .|.|||+.|.-- =.|.=+|+ .| +.+-++.+. +....|
T Consensus 74 ~I~eV~iGat~~~G~~~kav~iGGEtvfyrhE~~~~npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~ 153 (389)
T TIGR00381 74 KIEEVVLGATKAEGTREKTVTLGGQRALYRFEEPQPNPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFG 153 (389)
T ss_pred eeEEEEEccccCCCCcceeEEECCcccceecCcCCCCCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 45789996 688999886431 12233444 24 555555544 335899
Q ss_pred CCEEEEec--CCH--------HHHHHHHHHHHhhccCCcCcceeec----cCCCHHHHHHHhhhcCc--eeeCCCCCCcc
Q 005248 132 ADLVRITV--QGK--------READACFEIKNSLVQKNYNIPLVAD----IHFAPSVALRVAECFDK--IRVNPGNFADR 195 (706)
Q Consensus 132 ceiVRvtv--~~~--------~~A~al~~I~~~L~~~g~~iPLVAD----IHF~~~~Al~a~~~~~k--iRINPGNig~~ 195 (706)
+|+|.|-. .|. +.|+.++.+.+ .+++|||=| --+|+.+..+|++.+.. .=||.=|..+
T Consensus 154 aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~-----av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~- 227 (389)
T TIGR00381 154 ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQ-----AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL- 227 (389)
T ss_pred CCEEEEEecCCCccccccCHHHHHHHHHHHHH-----hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh-
Confidence 99987653 333 36677777766 499999988 36899999999998755 4477766622
Q ss_pred hhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCC
Q 005248 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH 275 (706)
Q Consensus 196 ~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~ 275 (706)
+|+++.+.||+||.|+ ++ ++..+ +..|.+..+.|.++||.
T Consensus 228 -----------------------Ny~~ia~lAk~yg~~V--vv-~s~~D--------------in~ak~Ln~kL~~~Gv~ 267 (389)
T TIGR00381 228 -----------------------DYEKIANAAKKYGHVV--LS-WTIMD--------------INMQKTLNRYLLKRGLM 267 (389)
T ss_pred -----------------------hHHHHHHHHHHhCCeE--EE-EcCCc--------------HHHHHHHHHHHHHcCCC
Confidence 6788999999999988 33 11121 23344455557899998
Q ss_pred --cEEEEEec----CC---hhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchh
Q 005248 276 --NFLFSMKA----SN---PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 325 (706)
Q Consensus 276 --~iviS~Ka----Sn---v~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IK 325 (706)
|||+--=. .+ ....+..-|+.|=+ ..+...||.--++|||-.-..-+.+
T Consensus 268 ~eDIVlDP~t~alG~Gieya~s~~erIRraALk-gD~~L~~Pii~~~~~~w~~kEa~~~ 325 (389)
T TIGR00381 268 PRDIVMDPTTCALGYGIEFSITNMERIRLSGLK-GDTDLNMPMSSGTTNAWGAREAWMV 325 (389)
T ss_pred HHHEEEcCCCccccCCHHHHHHHHHHHHHHHhc-CCcCCCCCeeccchhhhhheeeccC
Confidence 99997655 33 34455666765543 4445669999999998766555544
No 22
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.79 E-value=0.073 Score=55.81 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCc-eeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~k-iRINPGN 191 (706)
.|.+..+++..++.++|++++=|-+.. .++.+.+..+.+.|++ .+++||.-|. +++.++.+|++++.. -=||-=|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~-~~~~plsIDT-~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQE-VVDVPLCIDS-PNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHH-hCCCCEEEeC-CCHHHHHHHHHhCCCCCEEEeCC
Confidence 688999999999999999999987543 4557767776666654 3589999996 779999999987542 1255433
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC-CCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~-GSL~~~il~rygdt~eamVeSAle~~~i~e 270 (706)
-.. +++..+++.++++|.++=+=.++ -..+ .|.+..++.+.+.++.|+
T Consensus 100 ~~~-----------------------~~~~~~~~l~~~~g~~vv~m~~~~~g~P--------~t~~~~~~~l~~~v~~a~ 148 (261)
T PRK07535 100 AEG-----------------------EKLEVVLPLVKKYNAPVVALTMDDTGIP--------KDAEDRLAVAKELVEKAD 148 (261)
T ss_pred CCC-----------------------ccCHHHHHHHHHhCCCEEEEecCCCCCC--------CCHHHHHHHHHHHHHHHH
Confidence 311 13456888999999998543432 1121 245667889999999999
Q ss_pred HCCC--CcEEEE-----EecC--ChhHHHHHHHHHHHhhhcCCC-CCcccccccccCCCCC
Q 005248 271 KLDF--HNFLFS-----MKAS--NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGED 321 (706)
Q Consensus 271 ~~~f--~~iviS-----~KaS--nv~~~i~ayrlla~~~~~eg~-~YPLHLGVTEAG~g~~ 321 (706)
+.|+ ++|+|- ...+ ....++++++.|.+. + .||+=+|+.=--.|..
T Consensus 149 ~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~-----~pg~p~l~G~Sn~Sfglp 204 (261)
T PRK07535 149 EYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKEL-----YPKVHTTCGLSNISFGLP 204 (261)
T ss_pred HcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHh-----CCCCCEEEEeCCCccCCc
Confidence 9999 688874 2221 245678999999887 6 6999999987666663
No 23
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=96.51 E-value=0.01 Score=64.77 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCChhhHhHHHHHHHHHhhcccCC----ceEeccC---CCCcccccHHHHHHHHHHHhCCCCCCeEEEEcccccCccccc
Q 005248 616 GQDFDFLRDTSFNLLQGCRMRNTK----TEYVSCP---SCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMA 688 (706)
Q Consensus 616 ~~p~~ev~~~a~~ILqa~rlR~~k----te~ISCP---sCGRTlfDLq~~~a~Ik~~t~hLkglkIAIMGCIVNGPGEma 688 (706)
+.+.+.+. ..++.|+.+|+-... ...+||| +|...+.|-++++.+|.+.++...++||.|=|| .||=|.-.
T Consensus 300 ~i~~~~~~-~~~~~l~~~gl~~~~~~~~~~v~aC~G~~~C~~~~~~t~~~a~~l~~~~~~~~~~~i~vSGC-~n~C~~~~ 377 (390)
T TIGR02435 300 GLPPERAD-AAQRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCEPTAPITVHLSGC-AKGCAHPG 377 (390)
T ss_pred CCCHHHHH-HHHHHHHHCCCCcCCCCCeeeEEECCCccccccchhhHHHHHHHHHHHhcccCCcEEEEeCC-cccccCCC
Confidence 34455553 346778888876432 2578995 699999999999999998887766799999999 49999999
Q ss_pred cCceeeeccCCC
Q 005248 689 DADFGYVGGAPG 700 (706)
Q Consensus 689 dAD~GyvG~~~g 700 (706)
-||+|++|..+|
T Consensus 378 ~adiG~~G~~~g 389 (390)
T TIGR02435 378 PAAITLVAAGAG 389 (390)
T ss_pred CCCEEEEecCCC
Confidence 999999998665
No 24
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=96.38 E-value=0.011 Score=67.79 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=72.2
Q ss_pred CceEEEeCC------CCChhhHhHHHHHHHHHhhcccCC------ceEeccCC---CCcccccHHHH----HHHHHHHhC
Q 005248 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEI----SAEIREKTS 667 (706)
Q Consensus 607 GDtIrvslt------~~p~~ev~~~a~~ILqa~rlR~~k------te~ISCPs---CGRTlfDLq~~----~a~Ik~~t~ 667 (706)
|..||++.. +.+.+.+ ...+..|+++|+.... ...+|||+ |+.-+.|-+.. +.++++.+.
T Consensus 385 g~~irlT~~Qnl~l~~i~~~~~-~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~ 463 (569)
T PRK13504 385 KGDFRLTANQNLIIANVPPSDK-AKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLA 463 (569)
T ss_pred CCEEEEeCCCCEEEcCCCHHHH-HHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHh
Confidence 347888654 3445555 2346889999995432 24689976 99988887764 556666554
Q ss_pred C--C-C-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 668 H--L-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 668 h--L-k-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
. + + ++||.|=||. ||=|...-||+|++|...+..+||.
T Consensus 464 ~~~l~~~~i~I~vSGCp-n~Ca~~~iaDIG~vG~~~~~y~i~l 505 (569)
T PRK13504 464 KHGLSDEHIVIRMTGCP-NGCARPYLAEIGLVGKAPGRYNLYL 505 (569)
T ss_pred hcCCCCCceEEEEeCCc-ccccccccCcEEEEecCCCeEEEEE
Confidence 3 4 4 7899999995 9999999999999999888777773
No 25
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.13 E-value=0.29 Score=51.66 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------CHH--HHHHHHHHHHhhc
Q 005248 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------GKR--EADACFEIKNSLV 156 (706)
Q Consensus 86 r~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~-------~~~--~A~al~~I~~~L~ 156 (706)
....+|.+|++.||++..+.|-=.+.. .|.+++.+-.++|.++|.+++|...- +-+ -.+.++.+++..+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~ 88 (266)
T PRK13398 11 GEKTIVKVGDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD 88 (266)
T ss_pred CCCcEEEECCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH
Confidence 346679999999999966777666655 47889999999999999999999822 112 2444555555433
Q ss_pred cCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 157 ~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
...+|.++++|-...+ ..+.+.++-+-|--+|+-+ .++++.+...|+||
T Consensus 89 --~~Gl~~~te~~d~~~~-~~l~~~vd~~kIga~~~~n--------------------------~~LL~~~a~~gkPV-- 137 (266)
T PRK13398 89 --KYNLPVVTEVMDTRDV-EEVADYADMLQIGSRNMQN--------------------------FELLKEVGKTKKPI-- 137 (266)
T ss_pred --HcCCCEEEeeCChhhH-HHHHHhCCEEEECcccccC--------------------------HHHHHHHhcCCCcE--
Confidence 3779999999865444 4445778889998888854 35888888999999
Q ss_pred ecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 005248 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS 280 (706)
++-.|-- .+++.+..+ ++.++..|-.++++=
T Consensus 138 ~lk~G~~---------~s~~e~~~A----~e~i~~~Gn~~i~L~ 168 (266)
T PRK13398 138 LLKRGMS---------ATLEEWLYA----AEYIMSEGNENVVLC 168 (266)
T ss_pred EEeCCCC---------CCHHHHHHH----HHHHHhcCCCeEEEE
Confidence 4433300 133333333 355677888887773
No 26
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.09 E-value=0.49 Score=50.60 Aligned_cols=206 Identities=17% Similarity=0.263 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv----~~~------~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ 183 (706)
.|.++.++++.++.+.|++|+=|=. |+. ++.+-+..+.+.|++ .+++||--|. |++.+|.+|+++ ++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~-~~~~~ISIDT-~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQ-RFEVWISVDT-SKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEC-CCHHHHHHHHHcCCC
Confidence 5899999999999999999998873 332 233333333344443 3479999896 789999999986 44
Q ss_pred ceeeCCC-CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHH--HhhCCChHHHHH
Q 005248 184 KIRVNPG-NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--SYYGDSPRGMVE 260 (706)
Q Consensus 184 kiRINPG-Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il--~rygdt~eamVe 260 (706)
= ||== .+.+ ..+++.|+++|.++=+--+.| .++..- ..|.|--+.+..
T Consensus 113 i--INDI~g~~d--------------------------~~~~~~~a~~~~~vVlmh~~g-~p~~~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 113 I--INDIRSLSE--------------------------PGALEAAAETGLPVCLMHMQG-NPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_pred E--EEECCCCCC--------------------------HHHHHHHHHcCCCEEEEcCCC-CCCccccCCCcccHHHHHHH
Confidence 2 3311 0111 124455788999986655545 232221 234444566778
Q ss_pred HHHHHHHHHHHCCCC--cEEEEEe---cCChhHHHHHHHHHHHhhhc-CCCCCccccccc------c-cCCCCCCchhhH
Q 005248 261 SAFEFARICRKLDFH--NFLFSMK---ASNPVVMVQAYRLLVAEMYV-HGWDYPLHLGVT------E-AGEGEDGRMKSA 327 (706)
Q Consensus 261 SAle~~~i~e~~~f~--~iviS~K---aSnv~~~i~ayrlla~~~~~-eg~~YPLHLGVT------E-AG~g~~G~IKSa 327 (706)
...+.++.|++.|+. +|++--= +.+.. +.+++|..- ++ ....||+=+|+. + .|....-|+-.+
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~---~n~~ll~~l-~~l~~lg~Pilvg~SRKsfig~~~~~~~~~r~~~T 239 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFGFGKNLS---HNYQLLARL-AEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGS 239 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCcCCCHH---HHHHHHHHH-HHHHhCCCCEEEEecccHHHHhhcCCChhhhhHHH
Confidence 888889999999995 8887421 11222 344443321 11 115799999965 1 122344566666
Q ss_pred HHHHHHhhcCCCceeEEecCCCCcccchHHHHHHH
Q 005248 328 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 362 (706)
Q Consensus 328 vGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~ 362 (706)
++..+++...=.|-||| ++|..+++.++
T Consensus 240 ~a~~~~a~~~ga~iiRv-------HdV~~~~~a~~ 267 (282)
T PRK11613 240 LACAVIAAMQGAQIIRV-------HDVKETVEAMR 267 (282)
T ss_pred HHHHHHHHHCCCCEEEc-------CCHHHHHHHHH
Confidence 66655444433477775 44555555444
No 27
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=95.92 E-value=0.026 Score=61.80 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHHhhcccC------CceEeccCCCC---cccccHHHHHHHHHHHhC------CCC-CCeEEEEcccccCcccccc
Q 005248 626 SFNLLQGCRMRNT------KTEYVSCPSCG---RTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMAD 689 (706)
Q Consensus 626 a~~ILqa~rlR~~------kte~ISCPsCG---RTlfDLq~~~a~Ik~~t~------hLk-glkIAIMGCIVNGPGEmad 689 (706)
-+..|++.||-.. -.++++||.|| .-++|...++++|.+.+. .|+ .+||+|=||- |+-+..--
T Consensus 69 l~~~l~~~GL~~~~~~g~~~Rnv~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~-~~c~~~~~ 147 (390)
T TIGR02435 69 LSQALLAAGLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGG-RLVLLGDT 147 (390)
T ss_pred HHHHHHHCCCCCccccCCcccccccCccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCC-ccccCCCC
Confidence 3577787777542 23588999999 447899999999987764 466 6799999997 88899999
Q ss_pred CceeeeccCCCc
Q 005248 690 ADFGYVGGAPGK 701 (706)
Q Consensus 690 AD~GyvG~~~gk 701 (706)
+|+|+++...+.
T Consensus 148 ~DIG~~~~~~~~ 159 (390)
T TIGR02435 148 ADVRLQALTTGA 159 (390)
T ss_pred CCEEEEEEecCC
Confidence 999999875544
No 28
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.89 E-value=0.026 Score=67.00 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=66.5
Q ss_pred CCCCChhhHhHHHHHHHHHhhcc----cCCceEeccCC---CCcccccHHHHHHHHHHHhCCC--C-CCeEEEEcccccC
Q 005248 614 APGQDFDFLRDTSFNLLQGCRMR----NTKTEYVSCPS---CGRTLFDLQEISAEIREKTSHL--P-GVSIAIMGCIVNG 683 (706)
Q Consensus 614 lt~~p~~ev~~~a~~ILqa~rlR----~~kte~ISCPs---CGRTlfDLq~~~a~Ik~~t~hL--k-glkIAIMGCIVNG 683 (706)
+.+.+.+++. -.+..|+..|+. ..--..+|||+ |..-++|-+.++.++++++..+ | .+||+|-||. |.
T Consensus 595 l~gi~~~~l~-~i~~~L~~~gl~~~~g~~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~~~~p~k~ki~vSGC~-~~ 672 (785)
T TIGR02374 595 LFGAKKDDLP-NIWKDLKMPGYEHAYGKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGLRTPHKIKIGVSGCE-RE 672 (785)
T ss_pred ECCCCHHHHH-HHHHHHHhCCCCCCCCCCccCcccCCCccccCcchhhHHHHHHHHHHHhcccCCCCceEEEEECCc-cc
Confidence 3456666663 346777877774 11235789975 6666788888999999988754 4 6899999998 89
Q ss_pred ccccccCceeeeccCCCceEee
Q 005248 684 PGEMADADFGYVGGAPGKIDLL 705 (706)
Q Consensus 684 PGEmadAD~GyvG~~~gki~LY 705 (706)
=++..-+|+|++|... ...+|
T Consensus 673 C~~~~~~DiG~i~~~~-g~~v~ 693 (785)
T TIGR02374 673 CAEAAGKDVGVIATEK-GWNLY 693 (785)
T ss_pred cchhhhCcEEEEEecC-CeEEE
Confidence 9999999999998744 35566
No 29
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.88 E-value=0.031 Score=67.18 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCcccchhhhHHHHHHHhhhcCCceEEEe------CCCCChhhHhHHHHHHHHHhhcccCCc------eEeccCC---CC
Q 005248 585 IHRDDLVIGAGTNVGALLVDGLGDGLLLE------APGQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCPS---CG 649 (706)
Q Consensus 585 G~~~~~~IkSa~~iG~LL~dGIGDtIrvs------lt~~p~~ev~~~a~~ILqa~rlR~~kt------e~ISCPs---CG 649 (706)
|....-+++.-+++. +-.|..++++ +.+.+.+.+. -.++=|+++|+..... ..+|||+ |.
T Consensus 574 G~lt~~ql~~ia~iA----~kyg~~~~iT~~Q~i~L~~i~~~~l~-~v~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~ 648 (847)
T PRK14989 574 GEITPEGLMAVGRIA----REFNLYTKITGSQRIGLFGAQKDDLP-EIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCR 648 (847)
T ss_pred cEeCHHHHHHHHHHH----HHHCCcEEEcCCCceEeCCCCHHHHH-HHHHHHHHCCCCcCCCCCCCcCceeeCCCCCccc
Confidence 333445555544443 3333456664 3355666663 4466667778876532 4889997 77
Q ss_pred cccccHHHHHHHHHHHhCCC--C-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 650 RTLFDLQEISAEIREKTSHL--P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 650 RTlfDLq~~~a~Ik~~t~hL--k-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
.-+.|-+.++.+++++...+ | .+||+|=||. |.=++..-+|+|++|...| ..+|+
T Consensus 649 ~g~~dt~~la~~l~~~~~~~~~P~k~ki~vSGC~-~~C~~~~i~DiG~i~~~~G-~~v~v 706 (847)
T PRK14989 649 YGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT-RECAEAQGKDVGIIATEKG-WNLYV 706 (847)
T ss_pred cccccHHHHHHHHHHHhccCCCCCceEEEEeCCc-ccccccccccEEEEEecCc-eEEEE
Confidence 77888889999999998665 4 6899999995 9999999999999997544 66763
No 30
>PLN00178 sulfite reductase
Probab=95.86 E-value=0.034 Score=64.85 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=69.4
Q ss_pred CceEEEeCC------CCChhhHhHHHHHHHHHhhcccCCc------eEecc---CCCCcccccHHHHHHHHHH----HhC
Q 005248 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSC---PSCGRTLFDLQEISAEIRE----KTS 667 (706)
Q Consensus 607 GDtIrvslt------~~p~~ev~~~a~~ILqa~rlR~~kt------e~ISC---PsCGRTlfDLq~~~a~Ik~----~t~ 667 (706)
|..||++.. +.+.+.+ .-...+|+.+|+..... ..++| |+|+-.+.|-+..+..|.+ .+.
T Consensus 433 g~~iRlT~~Qnlil~~I~~~~~-~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~~ 511 (623)
T PLN00178 433 NLPVRLTPNQNLILCDIRPAWK-EPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMFN 511 (623)
T ss_pred CCcEEEeCCCCEEEcCCCHHHH-HHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 446888643 4444544 23468899999974321 34699 5699888887766654443 332
Q ss_pred --CC--C-CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 668 --HL--P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 668 --hL--k-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
.+ + .+||+|=||. ||=|.-.-||+|++|.++++.+||.
T Consensus 512 ~~~l~~~~~i~I~vSGCp-NgCarp~iaDIGlvG~~~~~Y~I~l 554 (623)
T PLN00178 512 KVGLKYDESVVVRMTGCP-NGCARPYMAELGFVGDGPNSYQIWL 554 (623)
T ss_pred hcCCCCCCceEEEEeCCC-ccccccccCcEEEEcCCCCeEEEEE
Confidence 22 2 6899999995 9999999999999998888888873
No 31
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=95.85 E-value=0.037 Score=63.90 Aligned_cols=98 Identities=21% Similarity=0.373 Sum_probs=71.8
Q ss_pred CceEEEeCC------CCChhhHhHHHHHHHHHhhcccCC------ceEeccCC---CCcccccHH----HHHHHHHHHhC
Q 005248 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQ----EISAEIREKTS 667 (706)
Q Consensus 607 GDtIrvslt------~~p~~ev~~~a~~ILqa~rlR~~k------te~ISCPs---CGRTlfDLq----~~~a~Ik~~t~ 667 (706)
|..||++.. +.+.+++ ..-..+|+..|+.... -..++||+ |+..+.|-+ .+++++++.+.
T Consensus 395 g~~irlT~~Qnl~l~~V~~~~~-~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~ 473 (577)
T TIGR02042 395 NLPVRLTPNQNIILYDIQPEWK-RAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLE 473 (577)
T ss_pred CCCEEEcCCCCeEECCCCHHHH-HHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 446888643 4555555 2346889999986431 13679986 998888876 36666766554
Q ss_pred --CCC--CCeEEEEcccccCccccccCceeeeccCCCceEeeC
Q 005248 668 --HLP--GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLLW 706 (706)
Q Consensus 668 --hLk--glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY~ 706 (706)
.++ .+||+|=||- ||=|.-.-||+|++|.++++..||.
T Consensus 474 ~~~l~~~~i~I~vSGCp-n~Ca~p~iaDIG~vG~~~~~y~l~l 515 (577)
T TIGR02042 474 KVGLPDEHFVVRMTGCP-NGCARPYMAELGFVGSAPNSYQVWL 515 (577)
T ss_pred hcCCCCCCcEEEEECCC-ccccCCCcCcEEEECCCCCcEEEEE
Confidence 342 6999999995 9999999999999999888888873
No 32
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=95.75 E-value=0.47 Score=59.35 Aligned_cols=211 Identities=20% Similarity=0.240 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCC--cCcceeeccCCCHHHHHHHhhhc-CceeeCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKN--YNIPLVADIHFAPSVALRVAECF-DKIRVNP 189 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g--~~iPLVADIHF~~~~Al~a~~~~-~kiRINP 189 (706)
.|.+..+++.+++.++||+|+=|-+.. ..+.+.+.++...|.+.. +++||.-|- +++.++.+|++.+ -+==||=
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~v~eaaLk~~~G~~IINs 443 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDS-SEWAVLEAGLKCIQGKCIVNS 443 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeC-CcHHHHHHHHHhcCCCCEEEe
Confidence 799999999999999999999987654 366677788887776532 489999996 7799999998874 3333676
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC--CChHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg--dt~eamVeSAle~~~ 267 (706)
=|..++ +++|..+...|+++|.++=+... +++ | .|.+.-++-|.+.++
T Consensus 444 Is~~~g---------------------~~~~~~~~~l~~~yga~vV~m~~----de~-----G~p~t~e~r~~i~~~~~~ 493 (1178)
T TIGR02082 444 ISLKDG---------------------EERFIETAKLIKEYGAAVVVMAF----DEE-----GQARTADRKIEICKRAYN 493 (1178)
T ss_pred CCCCCC---------------------CccHHHHHHHHHHhCCCEEEEec----CCC-----CCCCCHHHHHHHHHHHHH
Confidence 555321 13677899999999999966652 221 4 366777889999999
Q ss_pred HHHH-CCC--CcEEEE-----EecCC------hhHHHHHHHHHHHhhhcCCC-CCcccccccccCCCCCC------chhh
Q 005248 268 ICRK-LDF--HNFLFS-----MKASN------PVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGEDG------RMKS 326 (706)
Q Consensus 268 i~e~-~~f--~~iviS-----~KaSn------v~~~i~ayrlla~~~~~eg~-~YPLHLGVTEAG~g~~G------~IKS 326 (706)
.|.+ .|| +||+|- +-... ...++++.|.+.++ + .+|.-+|+.==-.|..| .+.|
T Consensus 494 ~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~-----~pg~~~~~GlSN~SFglp~~~~~R~~ln~ 568 (1178)
T TIGR02082 494 ILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEE-----LPDAKISGGVSNVSFSFRGNPAAREAMHS 568 (1178)
T ss_pred HHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHh-----CCCCceEEEecccccCCCCCchHHHHHHH
Confidence 9987 999 688773 22222 44678888888877 5 79999999998888865 3333
Q ss_pred H---HHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 005248 327 A---IGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 361 (706)
Q Consensus 327 a---vGiG~LL~dGIGDTIRVSLT~d-P~~EV~va~~l~ 361 (706)
+ .++..=|.-+|=|.--..+-++ |.++..+|..++
T Consensus 569 ~FL~~a~~~Gld~aIvnp~~~~~~~~i~~~~~~~~~~~l 607 (1178)
T TIGR02082 569 VFLYHAIRAGMDMGIVNAGKILPYDDIDPELRQVVEDLI 607 (1178)
T ss_pred HHHHHHHHcCCchhhcChhhhhHHHhhCHHHHHHHHHHH
Confidence 2 3444445555555443332221 233444555554
No 33
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.64 E-value=0.5 Score=51.96 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec------------CCHHHHHHHHHHHH
Q 005248 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIKN 153 (706)
Q Consensus 86 r~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv------------~~~~~A~al~~I~~ 153 (706)
..+..|.+|++.|||++|..|- --..-.+-+...+...+|.++|..++|-.. ++.+.-+.|.+.++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~ia--Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~ 179 (360)
T PRK12595 102 PEDTIVDVKGEVIGDGNQSFIF--GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVAD 179 (360)
T ss_pred CCCCEEEECCEEecCCCeeeEE--ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHH
Confidence 3467799999999999998875 222334567788888889999999999652 24455566666666
Q ss_pred hhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCe
Q 005248 154 SLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 233 (706)
Q Consensus 154 ~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~ 233 (706)
+ ..+|.++++|--..+ ..+.+.++-+-|--+|+-+ .++++.+.+.|+|
T Consensus 180 ~-----~Gl~~~t~v~d~~~~-~~l~~~vd~lkI~s~~~~n--------------------------~~LL~~~a~~gkP 227 (360)
T PRK12595 180 E-----YGLAVISEIVNPADV-EVALDYVDVIQIGARNMQN--------------------------FELLKAAGRVNKP 227 (360)
T ss_pred H-----cCCCEEEeeCCHHHH-HHHHHhCCeEEECcccccC--------------------------HHHHHHHHccCCc
Confidence 4 889999999865444 4456679999999999854 3688999999999
Q ss_pred EEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE--EecC-----ChhHHHHHHHHHHHhhhcCCCC
Q 005248 234 VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKAS-----NPVVMVQAYRLLVAEMYVHGWD 306 (706)
Q Consensus 234 IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS--~KaS-----nv~~~i~ayrlla~~~~~eg~~ 306 (706)
|=+=..-. .+++. ++.|.|. +.+.|-++|++- +=++ .-..-..+-..|-++ ++
T Consensus 228 Vilk~G~~-----------~t~~e-~~~Ave~---i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~-----~~ 287 (360)
T PRK12595 228 VLLKRGLS-----------ATIEE-FIYAAEY---IMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQE-----TH 287 (360)
T ss_pred EEEeCCCC-----------CCHHH-HHHHHHH---HHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH-----hC
Confidence 95444321 13333 3444444 456777777764 3221 111234555556655 57
Q ss_pred Cccccccccc
Q 005248 307 YPLHLGVTEA 316 (706)
Q Consensus 307 YPLHLGVTEA 316 (706)
+|.=++.|-+
T Consensus 288 ~PV~~d~~Hs 297 (360)
T PRK12595 288 LPVMVDVTHS 297 (360)
T ss_pred CCEEEeCCCC
Confidence 7744434655
No 34
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.61 E-value=0.42 Score=52.25 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=100.2
Q ss_pred CceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE----------ecCC--HHHHHHHHHHHHh
Q 005248 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI----------TVQG--KREADACFEIKNS 154 (706)
Q Consensus 87 ~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv----------tv~~--~~~A~al~~I~~~ 154 (706)
....|.+|++.|||++++.|-= ...-.+-+...+..++|.++||+++|. +.++ .+.-+-|.+.+++
T Consensus 78 ~~t~v~~~~~~ig~~~~~~IAG--PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 78 EPTVVKVGDVEIGGGKPVVIAG--PCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCCEEEECCEEECCCceEEEEe--cCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH
Confidence 3556899999999988777644 344567888999999999999999996 2333 4444555555553
Q ss_pred hccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 155 L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
..+|++.++|-...+-+ +.+.+|-+-|--+|+-+ .++++.+-+.|+||
T Consensus 156 -----~Gl~v~tev~d~~~~~~-l~~~vd~lqIgAr~~~N--------------------------~~LL~~va~~~kPV 203 (335)
T PRK08673 156 -----TGLPIVTEVMDPRDVEL-VAEYVDILQIGARNMQN--------------------------FDLLKEVGKTNKPV 203 (335)
T ss_pred -----cCCcEEEeeCCHHHHHH-HHHhCCeEEECcccccC--------------------------HHHHHHHHcCCCcE
Confidence 77999999986555544 45779999999999855 34888888899999
Q ss_pred EEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 005248 235 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 235 RIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS 280 (706)
=+=..- | .|.+.+.. |.| .+...|-+++++=
T Consensus 204 iLk~G~-~----------~ti~E~l~-A~e---~i~~~GN~~viL~ 234 (335)
T PRK08673 204 LLKRGM-S----------ATIEEWLM-AAE---YILAEGNPNVILC 234 (335)
T ss_pred EEeCCC-C----------CCHHHHHH-HHH---HHHHcCCCeEEEE
Confidence 332221 1 13333333 333 3567777777764
No 35
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.037 Score=63.30 Aligned_cols=96 Identities=22% Similarity=0.396 Sum_probs=73.6
Q ss_pred ceEEEeCC------CCChhhHhHHHHHHHHHhhcccC----CceEecc---CCCCcccccH----HHHHHHHHHHhCCCC
Q 005248 608 DGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNT----KTEYVSC---PSCGRTLFDL----QEISAEIREKTSHLP 670 (706)
Q Consensus 608 DtIrvslt------~~p~~ev~~~a~~ILqa~rlR~~----kte~ISC---PsCGRTlfDL----q~~~a~Ik~~t~hLk 670 (706)
+-||++.. +-+.++. ...+.+|++.|+-.. -...++| |+|+..+.+= +.+++++++.+....
T Consensus 336 ~eiRlT~~QnLii~~v~~~~~-~~i~~~l~~~Gl~t~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~ 414 (510)
T COG0155 336 GEIRLTPNQNLIIPNVPEAEL-EAILRILAALGLVTAPSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHG 414 (510)
T ss_pred ccEEeccCcceEecCCCHHHH-HHHHHHHHHcCCCCCCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccC
Confidence 56888653 3455555 567899999999873 4578899 6699888774 555555555554444
Q ss_pred -CCeEEEEcccccCccccccCceeeeccCCCceEee
Q 005248 671 -GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLL 705 (706)
Q Consensus 671 -glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY 705 (706)
.++|-|=||. ||=|--.=|++|++|..++..++|
T Consensus 415 ~~i~i~isGCp-n~Ca~~~~a~Igl~G~~~~~y~v~ 449 (510)
T COG0155 415 LPITLHISGCP-NGCGRPHLAEIGLVGKAKGGYQVY 449 (510)
T ss_pred CceeEEeccCc-chhcCcccCceeEeeccCcceEEE
Confidence 6899999996 999999999999999999987776
No 36
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=95.46 E-value=0.25 Score=49.87 Aligned_cols=168 Identities=18% Similarity=0.300 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCce
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~----------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ki 185 (706)
+.+..++++.++.++|++++=|-..+ .++-+.+..+.+.+++...++||.=|- |+|.++.+|+++=.++
T Consensus 17 ~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT-~~~~v~~~aL~~g~~~ 95 (210)
T PF00809_consen 17 SEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT-FNPEVAEAALKAGADI 95 (210)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-SSHHHHHHHHHHTSSE
T ss_pred CHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC-CCHHHHHHHHHcCcce
Confidence 45778889999999999999997544 455556666655555555789999996 7899999999983344
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC---CchhHHHhhC-CChHHHHHH
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS---LSDRIMSYYG-DSPRGMVES 261 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS---L~~~il~ryg-dt~eamVeS 261 (706)
=+|-.++-+ ..++++.|++++.++=+=.+.|+ .++. ..|. +-.+.+++-
T Consensus 96 ind~~~~~~-------------------------~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~i~~~ 148 (210)
T PF00809_consen 96 INDISGFED-------------------------DPEMLPLAAEYGAPVVLMHSDGNPKGMPET--ADYRLDIAEEIIEF 148 (210)
T ss_dssp EEETTTTSS-------------------------STTHHHHHHHHTSEEEEESESSETTTTTSS--HHHSHSHHHHHHHH
T ss_pred EEecccccc-------------------------cchhhhhhhcCCCEEEEEeccccccccccc--chhhhhHHHHHHHH
Confidence 455444421 23478999999998844333321 2222 1222 445788899
Q ss_pred HHHHHHHHHHCCC--CcEEEEEe---cCChhHHHHHHHHHHHhhhcCCCCCcccccc
Q 005248 262 AFEFARICRKLDF--HNFLFSMK---ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV 313 (706)
Q Consensus 262 Ale~~~i~e~~~f--~~iviS~K---aSnv~~~i~ayrlla~~~~~eg~~YPLHLGV 313 (706)
+.+.++.|++.|+ ++|+|--= +.+...-.+..+.+..-. +-..+|+=+|+
T Consensus 149 ~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~--~~~~~p~l~~~ 203 (210)
T PF00809_consen 149 LEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELK--ELFGYPILVGG 203 (210)
T ss_dssp HHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHH--TTSSSEBEEEE
T ss_pred HHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHH--HhCCCCEEEEE
Confidence 9999999999999 89987421 344444444444444321 11467776654
No 37
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.35 E-value=0.85 Score=47.98 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=110.6
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE------ec------CCHHHHHHHHHHHHhh
Q 005248 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI------TV------QGKREADACFEIKNSL 155 (706)
Q Consensus 88 Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv------tv------~~~~~A~al~~I~~~L 155 (706)
..+|.+|++.||+++++.|-= ...-.|.+.+.+..++|.++|..+.|- |. ++.+.-+.|.+++++
T Consensus 11 ~s~i~~~~~~~g~~~~~~IAG--pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~- 87 (260)
T TIGR01361 11 KTVVDVGGVKIGEGSPIVIAG--PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE- 87 (260)
T ss_pred CCEEEECCEEEcCCcEEEEEe--CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-
Confidence 456999999999999887654 444567888899999999999998884 11 244555556666554
Q ss_pred ccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
..+|.++|+|-...+.+. .+.++-+-|--+++-+ .++++.+.+.|+||=
T Consensus 88 ----~Gl~~~t~~~d~~~~~~l-~~~~d~lkI~s~~~~n--------------------------~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 88 ----HGLPVVTEVMDPRDVEIV-AEYADILQIGARNMQN--------------------------FELLKEVGKQGKPVL 136 (260)
T ss_pred ----hCCCEEEeeCChhhHHHH-HhhCCEEEECcccccC--------------------------HHHHHHHhcCCCcEE
Confidence 779999999876666554 4678999998888854 358899999999994
Q ss_pred EecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEe-cCC------hhHHHHHHHHHHHh
Q 005248 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK-ASN------PVVMVQAYRLLVAE 299 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~K-aSn------v~~~i~ayrlla~~ 299 (706)
+=..-. .+++. ++.| ++.+.+.|-++|++--- .|. ..+-.++-..|.++
T Consensus 137 lk~G~~-----------~t~~e-~~~A---ve~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~ 192 (260)
T TIGR01361 137 LKRGMG-----------NTIEE-WLYA---AEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE 192 (260)
T ss_pred EeCCCC-----------CCHHH-HHHH---HHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh
Confidence 433211 12322 3344 44456788888888321 332 23445555566655
No 38
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=95.33 E-value=0.4 Score=60.10 Aligned_cols=211 Identities=16% Similarity=0.236 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccC--CcCcceeeccCCCHHHHHHHhhhcC-ceeeCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECFD-KIRVNP 189 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~--g~~iPLVADIHF~~~~Al~a~~~~~-kiRINP 189 (706)
.|.+..+++.+++.++|++|+=|-+- ...+.+.+.++...+... -+++||.-|- +++.++.+|++++. |==||=
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~ViEaaLk~~~G~~IINS 459 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDS-SKWEVIEAGLKCIQGKGIVNS 459 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeC-CcHHHHHHHHhhcCCCCEEEe
Confidence 89999999999999999999988753 356666777777666542 3589999996 67899988888743 333776
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC--CChHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg--dt~eamVeSAle~~~ 267 (706)
=|..++ +++|..++..||+||.++=+... +++ | +|.+.=++-|.+.++
T Consensus 460 Is~~~~---------------------~~~~~~~~~l~~kyga~vV~m~~----de~-----G~~~t~e~r~~ia~r~~~ 509 (1229)
T PRK09490 460 ISLKEG---------------------EEKFIEHARLVRRYGAAVVVMAF----DEQ-----GQADTRERKIEICKRAYD 509 (1229)
T ss_pred CCCCCC---------------------CccHHHHHHHHHHhCCCEEEEec----CCC-----CCCCCHHHHHHHHHHHHH
Confidence 665332 23678899999999999977662 221 4 578888999999999
Q ss_pred HHHH-CCC--CcEEE-----EEecC------ChhHHHHHHHHHHHhhhcCCC-CCcccccccccCCCCC------Cchhh
Q 005248 268 ICRK-LDF--HNFLF-----SMKAS------NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGED------GRMKS 326 (706)
Q Consensus 268 i~e~-~~f--~~ivi-----S~KaS------nv~~~i~ayrlla~~~~~eg~-~YPLHLGVTEAG~g~~------G~IKS 326 (706)
++.+ .|| +||+| .+++. ...+++++-|++.++ + .-...+||.==-.|.. -.+.|
T Consensus 510 ~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~-----~P~~~~~~GlSNiSFgl~g~~~~R~~lns 584 (1229)
T PRK09490 510 ILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQN-----LPHAKISGGVSNVSFSFRGNNPVREAIHA 584 (1229)
T ss_pred HHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHH-----CCCCcEEEeeccccccCCCCCchHHHHHH
Confidence 8865 999 56654 66654 467889999999887 3 2338889888777662 22333
Q ss_pred ---HHHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 005248 327 ---AIGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 361 (706)
Q Consensus 327 ---avGiG~LL~dGIGDTIRVSLT~d-P~~EV~va~~l~ 361 (706)
+.++..=|.-+|=|.--...-++ |.++..+|..++
T Consensus 585 ~FL~~a~~aGld~aIvnp~~~~~~~~i~~e~~~~~~~~l 623 (1229)
T PRK09490 585 VFLYHAIKAGMDMGIVNAGQLAIYDDIPPELREAVEDVV 623 (1229)
T ss_pred HHHHHHHHcCcchhhcCccccccccccCHHHHHHHHHHH
Confidence 23455556666666654443333 334455565554
No 39
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=95.17 E-value=0.062 Score=60.95 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=58.7
Q ss_pred CChhhHhHHHHHHHHHhhcccCC------ceEeccCCCCcc---cccHHHHHHHHHHHhC----------CCC-CCeEEE
Q 005248 617 QDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPSCGRT---LFDLQEISAEIREKTS----------HLP-GVSIAI 676 (706)
Q Consensus 617 ~p~~ev~~~a~~ILqa~rlR~~k------te~ISCPsCGRT---lfDLq~~~a~Ik~~t~----------hLk-glkIAI 676 (706)
.+.+.+. .-+.-|++.||-... -+.++||.||.. ++|.+.++.+|.+.+. +|| -+||+|
T Consensus 111 i~~~dl~-~i~~~L~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~v 189 (513)
T PRK09566 111 ILLEDLP-EILNRLKAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAI 189 (513)
T ss_pred CcHHHHH-HHHHHHHHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEE
Confidence 3344442 234556666665332 257899999886 7999999999998763 577 789999
Q ss_pred EcccccCccccccCceeeecc
Q 005248 677 MGCIVNGPGEMADADFGYVGG 697 (706)
Q Consensus 677 MGCIVNGPGEmadAD~GyvG~ 697 (706)
=||. |.-+...-+|+|+++.
T Consensus 190 sGc~-~~c~~~~i~DiG~~~~ 209 (513)
T PRK09566 190 AGGR-DNSVHAEINDIAFVPA 209 (513)
T ss_pred ECCC-CCcccccccceEEEEE
Confidence 9997 6778888899999876
No 40
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=95.05 E-value=0.059 Score=57.33 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=50.3
Q ss_pred eEeccCC---CCcccccHHHHHHHHHHHhCCCC-CCeEEEEcccccCccccccCceeeeccCCCc
Q 005248 641 EYVSCPS---CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGK 701 (706)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~a~Ik~~t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gk 701 (706)
..++||+ |..-.+|.++++++|++.+...+ .+||+|-||. |+.+...-+|+|++|..+.+
T Consensus 102 ~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~~~~~k~ki~iSGCp-~~C~~~~~~DiG~~g~~~~~ 165 (314)
T TIGR02912 102 NITACIGNRVCPFANYDTTKFAKRIEKAVFPNDYHVKIALTGCP-NDCAKARMHDFGIIGMTEPQ 165 (314)
T ss_pred ceeeCCCCCCCCCCcccHHHHHHHHHHHhhcCCceEEEEEeCCC-chhhHHHHhhcccccccCCc
Confidence 4789996 77789999999999999887666 7999999997 67788888999999874433
No 41
>PRK13753 dihydropteroate synthase; Provisional
Probab=94.94 E-value=2.8 Score=45.10 Aligned_cols=199 Identities=13% Similarity=0.095 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv----~~~------~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ 183 (706)
.|.+..++|+.++.+.|++||=|=. |+. +|.+-+..+.+.|++. .+|+--|- |++.+|.+|+++ ++
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISIDT-~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSIDS-FQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEEEC-CCHHHHHHHHHcCCC
Confidence 5889999999999999999998854 432 3555444555556654 46777775 889999999987 65
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC--Cchh-HHHhhCCChHHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS--LSDR-IMSYYGDSPRGMVE 260 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS--L~~~-il~rygdt~eamVe 260 (706)
= ||-=+=.. . ..+.+.+.++++|+=+==+.|. -... ....|.|--+.+..
T Consensus 99 i--INDVsg~~-d------------------------~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~ 151 (279)
T PRK13753 99 Y--LNDIQGFP-D------------------------PALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVR 151 (279)
T ss_pred E--EEeCCCCC-c------------------------hHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHH
Confidence 3 44321111 1 2255667788898866555431 1111 11223222234555
Q ss_pred HHHHHHHHHHHCCC--CcEEEE-----EecCChhHHHHHHHHHHHhhhcCCCCCcccccccc------c-CCCCCCchhh
Q 005248 261 SAFEFARICRKLDF--HNFLFS-----MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE------A-GEGEDGRMKS 326 (706)
Q Consensus 261 SAle~~~i~e~~~f--~~iviS-----~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTE------A-G~g~~G~IKS 326 (706)
.-.+.++.|++.|. ++|++- -|+.+...-.+-.+.|-+-. ....||+=+|+.= . |....-|.-.
T Consensus 152 ~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~--~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~ 229 (279)
T PRK13753 152 FFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLK--SALGLPLLVSVSRKSFLGATVGLPVKDLGPA 229 (279)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHH--HhCCCceEEEccHhHHHHHHcCCChhhhhHh
Confidence 55566888999999 688875 45555544444333332220 0168999888421 1 2223455666
Q ss_pred HHHHHHHhhcCCCceeEEe
Q 005248 327 AIGIGTLLQDGLGDTIRVS 345 (706)
Q Consensus 327 avGiG~LL~dGIGDTIRVS 345 (706)
+++..+++...=.|-|||-
T Consensus 230 T~a~~~~a~~~Ga~ivRvH 248 (279)
T PRK13753 230 SLAAELHAIGNGADYVRTH 248 (279)
T ss_pred HHHHHHHHHHcCCCEEEeC
Confidence 6666655555446777763
No 42
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.94 E-value=2.2 Score=44.50 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=115.9
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHhhccCCcCcceee
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~---A~al~~I~~~L~~~g~~iPLVA 166 (706)
.|+|+++.+|++.|..+=+-+. .+.+...+|+.++...|||+|=+-+.-.+. .+.+..+...|++.-.++|+++
T Consensus 3 ~~~~~~~~~~~~~~~i~v~l~~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~ 79 (253)
T PRK02412 3 TVTVKNLVIGEGAPKIIVPIMG---KTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLF 79 (253)
T ss_pred eeEEeceEeCCCCcEEEEEeCC---CCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 5789999999999988877764 346777888899999999998666543322 3444444444444333589998
Q ss_pred ccCCCH-------HHH--HHHhhhcCceeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 167 DIHFAP-------SVA--LRVAECFDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 167 DIHF~~-------~~A--l~a~~~~~kiRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
-+=-.. .-. ++..+.+ +|.+ | .|.| .+++ .=++.+..+++.+++.++.+ |
T Consensus 80 T~R~~~eGG~~~~~~~~~~~ll~~~--~~~~~~-d~vD-------iEl~---------~~~~~~~~l~~~~~~~~~kv-I 139 (253)
T PRK02412 80 TFRTAKEGGEIALSDEEYLALIKAV--IKSGLP-DYID-------VELF---------SGKDVVKEMVAFAHEHGVKV-V 139 (253)
T ss_pred EECChhhCCCCCCCHHHHHHHHHHH--HhcCCC-CEEE-------Eecc---------CChHHHHHHHHHHHHcCCEE-E
Confidence 543211 100 0111111 2222 2 3333 2211 11346778999999888875 4
Q ss_pred ecCCCCCchhHHHhhCCCh--HHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCccccccc
Q 005248 237 GTNHGSLSDRIMSYYGDSP--RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt~--eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVT 314 (706)
+-.| .+..|| +.| .+.++-+++.|.+=++|-..+.+..+..+..+...+ +.+++.+.|+ +++
T Consensus 140 ~S~H---------~f~~tP~~~~l----~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~-~~~~~~~~P~-i~~- 203 (253)
T PRK02412 140 LSYH---------DFEKTPPKEEI----VERLRKMESLGADIVKIAVMPQSEQDVLTLLNATRE-MKELYADQPL-ITM- 203 (253)
T ss_pred EeeC---------CCCCCcCHHHH----HHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHH-HHhcCCCCCE-EEE-
Confidence 4444 112355 433 457778889999989999998887776555443322 1223356674 222
Q ss_pred ccCCCCCCchh
Q 005248 315 EAGEGEDGRMK 325 (706)
Q Consensus 315 EAG~g~~G~IK 325 (706)
+||+-|++-
T Consensus 204 --~MG~~G~~S 212 (253)
T PRK02412 204 --SMGKLGRIS 212 (253)
T ss_pred --eCCCCchHH
Confidence 478888765
No 43
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=94.66 E-value=0.05 Score=51.72 Aligned_cols=58 Identities=31% Similarity=0.615 Sum_probs=44.6
Q ss_pred eEeccCC---CCcccccHHHHHHHHH----HHhC--CCC-CCeEEEEcccccCccccccCceeeeccCC
Q 005248 641 EYVSCPS---CGRTLFDLQEISAEIR----EKTS--HLP-GVSIAIMGCIVNGPGEMADADFGYVGGAP 699 (706)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~a~Ik----~~t~--hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~~ 699 (706)
+.++||+ |.--++|-..++.+|. +... .++ .+||+|=||. |+=+...-+|+|++|...
T Consensus 7 nv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCp-n~C~~~~i~DIG~~g~~~ 74 (157)
T PF01077_consen 7 NVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCP-NSCARPQINDIGFIGVKK 74 (157)
T ss_dssp HEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESST-TSTTSGGGSSEEEEEEEE
T ss_pred ccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecc-cccccccccccccceeee
Confidence 4789998 5567788888899998 3333 455 6999999997 678888889999999743
No 44
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.64 E-value=2.6 Score=43.70 Aligned_cols=143 Identities=14% Similarity=0.192 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC-C
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-P 189 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~--~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN-P 189 (706)
...++..++=+..|.++|.+.+-+..|.+ .+.+.+..|++. +.+..+.+=...+++-...|.++ ++.||+- |
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~----~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVAL----GLPARLIVWCRAVKEDIEAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhc----CCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEe
Confidence 34567777778889999999999999866 444567777653 34455666555777777677776 8888862 2
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
-+=-.-.+. +..-.+.+-+++..+++.||++|..++++.-..+- .+++-+ .+.++.+
T Consensus 92 ~s~~~~~~~----------~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~~----~~~~~~~ 148 (259)
T cd07939 92 VSDIHLAHK----------LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR---------ADPDFL----IEFAEVA 148 (259)
T ss_pred cCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC---------CCHHHH----HHHHHHH
Confidence 221110111 11112344567788999999999999987743331 234333 4455666
Q ss_pred HHCCCCcEEEEEecCC
Q 005248 270 RKLDFHNFLFSMKASN 285 (706)
Q Consensus 270 e~~~f~~iviS~KaSn 285 (706)
.+.|-+. |+++-|.
T Consensus 149 ~~~G~~~--i~l~DT~ 162 (259)
T cd07939 149 QEAGADR--LRFADTV 162 (259)
T ss_pred HHCCCCE--EEeCCCC
Confidence 6778764 5666653
No 45
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=94.48 E-value=0.079 Score=60.62 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=68.6
Q ss_pred ceEEEeCC------CCChhhHhHHHHHHHHHhhcccCC-----ceEeccC---CCCcccccHHHHHHH----HHHHhCC-
Q 005248 608 DGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK-----TEYVSCP---SCGRTLFDLQEISAE----IREKTSH- 668 (706)
Q Consensus 608 DtIrvslt------~~p~~ev~~~a~~ILqa~rlR~~k-----te~ISCP---sCGRTlfDLq~~~a~----Ik~~t~h- 668 (706)
..||++.. +.+.+.+. --..+|+.+|+.... ...+||| +|..-+.|-+..+.+ +.+++..
T Consensus 370 ~~irlT~~Qnl~l~~v~~~~~~-~l~~~l~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~ 448 (541)
T TIGR02041 370 GDFRITPNQNLIIANVPEGGKA-KIEALARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKH 448 (541)
T ss_pred CeEEEeCCCCEEEcCCCHHHHH-HHHHHHHHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35887643 44555442 346789999986522 2367995 588888887777654 4444432
Q ss_pred --CC-CCeEEEEcccccCccccccCceeeeccCCCceEee
Q 005248 669 --LP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLL 705 (706)
Q Consensus 669 --Lk-glkIAIMGCIVNGPGEmadAD~GyvG~~~gki~LY 705 (706)
.+ ++||.|=||. ||=|...-||+|++|..++...||
T Consensus 449 ~~~~~~~~I~iSGCp-n~Ca~~~~adIG~~G~~~~~y~l~ 487 (541)
T TIGR02041 449 GLADEEIVLRMTGCP-NGCGRPYLAEIGLVGKAPGRYNLM 487 (541)
T ss_pred CCCCCceEEEEecCC-ccccccccCcEEEEEeccceEEEE
Confidence 23 7899999995 999999999999999877777776
No 46
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.38 E-value=2.1 Score=44.97 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee-CC-
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP- 189 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI-NP- 189 (706)
-.++.-++=+..|.++|.+.+-+..| +++++++++.+.+. +....+.+=.=-+.+-...|+++ ++.||| -|
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKL----GLKAKILTHIRCHMDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhC----CCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEec
Confidence 45677788889999999999999755 45677778777653 23333444333455555667776 899997 23
Q ss_pred ------CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHH
Q 005248 190 ------GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 190 ------GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAl 263 (706)
.|++. ..+..-+++.++++.||++|..++++.-..+ +.+++ -..
T Consensus 95 S~~~~~~~~~~-----------------~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~---------r~~~~----~l~ 144 (262)
T cd07948 95 SPFLREASHGK-----------------SITEIIESAVEVIEFVKSKGIEVRFSSEDSF---------RSDLV----DLL 144 (262)
T ss_pred CHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC---------CCCHH----HHH
Confidence 33332 1234455677899999999999999873222 21222 344
Q ss_pred HHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 264 EFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
+.++.+.+.|-+. |+++-+ +|..+-+-++.+.++
T Consensus 145 ~~~~~~~~~g~~~--i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 145 RVYRAVDKLGVNR--VGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred HHHHHHHHcCCCE--EEECCcCCCCCHHHHHHHHHHHHHh
Confidence 6777778888874 566655 455555555555444
No 47
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.19 E-value=0.34 Score=52.69 Aligned_cols=115 Identities=23% Similarity=0.396 Sum_probs=78.0
Q ss_pred eecccCCCCcccchhhhHHHHHHHhhhcCCc-eEEEeC------CCCChhhHhHHHHHHHHHhhcccCCc-----eEecc
Q 005248 578 HIQFPNGIHRDDLVIGAGTNVGALLVDGLGD-GLLLEA------PGQDFDFLRDTSFNLLQGCRMRNTKT-----EYVSC 645 (706)
Q Consensus 578 hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGD-tIrvsl------t~~p~~ev~~~a~~ILqa~rlR~~kt-----e~ISC 645 (706)
.++.+..|-+..-.|+..+++ .|-.|| .|.|.- .+.+.+.+ .-.-+.||..|+=..++ ...||
T Consensus 33 Rv~~ppgg~l~~e~Lr~i~di----AekyG~G~i~iT~rqg~ei~~i~~e~~-~~v~~~L~~iG~~~G~~G~~vr~i~aC 107 (317)
T COG2221 33 RVRTPPGGFLSAETLRKIADI----AEKYGDGLIHITSRQGLEIPGISPEDA-DDVVEELREIGLPVGSTGPAVRAIVAC 107 (317)
T ss_pred EEecCCCCccCHHHHHHHHHH----HHHhCCCeEEEEecCceEeccCCHHHH-HHHHHHHHHcCCCCCCcchhhhhhhcC
Confidence 556555555555666666665 455555 333321 12334444 23457888777754443 68899
Q ss_pred CC---CCcccccHHHHHHHHHHHhCC--CC-CCeEEEEcccccCccccccCceeeeccC
Q 005248 646 PS---CGRTLFDLQEISAEIREKTSH--LP-GVSIAIMGCIVNGPGEMADADFGYVGGA 698 (706)
Q Consensus 646 Ps---CGRTlfDLq~~~a~Ik~~t~h--Lk-glkIAIMGCIVNGPGEmadAD~GyvG~~ 698 (706)
|+ |.--++|-.+++.+|++.+.. +| -+||+|-||- |.=+-.+..|||++|..
T Consensus 108 ~G~~~C~~a~~Dt~~la~~l~e~f~~~~~P~KfKI~vsGCP-n~C~r~~~~DigivGv~ 165 (317)
T COG2221 108 PGPRTCETALYDTTELARRLEEEFLEVPVPYKFKIAVSGCP-NDCTRPQAHDIGIVGVW 165 (317)
T ss_pred cCcccccccccChHHHHHHHHHHhhcCCCCceEEEEeecCC-cccccccccceeEEEee
Confidence 85 999999999999999999884 44 6899999996 55555555699999973
No 48
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.04 E-value=3 Score=43.77 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCc-eeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~k-iRINPGN 191 (706)
.|.+..++++.++.++|++|+=|-... ..+.+.+.++...+++ -.++|+.-|- |++.++.+|++.+.. -=||-=+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~-~~~~piSIDT-~~~~v~e~aL~~~~G~~iINsIs 100 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLAT-EPTVPLMLDS-TNWEVIEAGLKCCQGKCVVNSIN 100 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCcEEeeC-CcHHHHHHHHhhCCCCcEEEeCC
Confidence 788999999999999999999886521 2344556666554543 2489999997 589999999986422 2255434
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC--CCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH--GSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~--GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
-... ++++..+++.|+++|.++=+=.+. | .+ .|++.-.+.+.+.++.+
T Consensus 101 ~~~~---------------------~e~~~~~~~~~~~~~~~vV~m~~~~~g-~p--------~t~~~~~~~~~~~~~~~ 150 (252)
T cd00740 101 LEDG---------------------EERFLKVARLAKEHGAAVVVLAFDEQG-QA--------KTRDKKVEIAERAYEAL 150 (252)
T ss_pred CCCC---------------------ccccHHHHHHHHHhCCCEEEeccCCCC-CC--------CCHHHHHHHHHHHHHHH
Confidence 2110 124566788899999888554331 1 11 13444456666666666
Q ss_pred HH-CCC--CcEEE-----EEecCCh------hHHHHHHHHHHHhhhcCCCCCccccccc
Q 005248 270 RK-LDF--HNFLF-----SMKASNP------VVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (706)
Q Consensus 270 e~-~~f--~~ivi-----S~KaSnv------~~~i~ayrlla~~~~~eg~~YPLHLGVT 314 (706)
.+ .|. ++|++ -.|+.+. ...++.++.+.+++ .+||+-+|+.
T Consensus 151 ~~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~----p~~pil~G~S 205 (252)
T cd00740 151 TEFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKERL----PAVKISLGVS 205 (252)
T ss_pred HHHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhC----CCCCEEEEec
Confidence 54 453 56666 3465333 33467777777661 3699999986
No 49
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.90 E-value=1.2 Score=49.34 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCC---HHHHHHHhhh-cCc
Q 005248 111 TNDTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFA---PSVALRVAEC-FDK 184 (706)
Q Consensus 111 ~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~---~~~Al~a~~~-~~k 184 (706)
--|..+.+..++.+.++.++|.+++=+..|. ...++.++.|++. .-..-+++|+|+- ...+..|+++ ++-
T Consensus 9 alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~----~~~~~ii~D~kl~d~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 9 ALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKN----FPDHTIVADMKTMDTGAIEVEMAAKAGADI 84 (430)
T ss_pred EeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHH----CCCCEEEEEeeeccchHHHHHHHHHcCCCE
Confidence 4567788999999999999999999876544 3456667777664 2234678999996 2233345554 666
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec-CCCCCchhHHHhhCCChHHHHHHHH
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv-N~GSL~~~il~rygdt~eamVeSAl 263 (706)
|-+- |- .+ +..+.++++.|+++|..+-+|+ |.. |+ .
T Consensus 85 V~v~-g~-~~----------------------~~~~~~~i~~a~~~G~~~~~g~~s~~------------t~-------~ 121 (430)
T PRK07028 85 VCIL-GL-AD----------------------DSTIEDAVRAARKYGVRLMADLINVP------------DP-------V 121 (430)
T ss_pred EEEe-cC-CC----------------------hHHHHHHHHHHHHcCCEEEEEecCCC------------CH-------H
Confidence 6543 21 01 1124678999999999988773 221 11 2
Q ss_pred HHHHHHHHCCCCcEEEEE---ecCChhHHHHHHHHHHHhhhcCCCCCcc--cccccc
Q 005248 264 EFARICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYVHGWDYPL--HLGVTE 315 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS~---KaSnv~~~i~ayrlla~~~~~eg~~YPL--HLGVTE 315 (706)
+.++.+.++|.+-|.+.. +.+......+..+.+.+. .++|+ |=|||.
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~GGI~~ 173 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAGGLDA 173 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-----CCCcEEEECCCCH
Confidence 234666677888776653 111112234455555554 45665 445543
No 50
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.82 E-value=3.9 Score=42.60 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCH---HHHHHHhhh--cCceee
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAP---SVALRVAEC--FDKIRV 187 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~---~~Al~a~~~--~~kiRI 187 (706)
-.++..++=+.+|.++|.+.+-+..+ ++++.+.+..+.+. .-++++.+=.--+. +.|.++-.. ++.|||
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~----~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIARE----VLNAEICGLARAVKKDIDAAAEALKPAKVDRIHT 92 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh----CCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEE
Confidence 45677777788999999999999887 46788888777764 23456555332223 333333221 778887
Q ss_pred C-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHH
Q 005248 188 N-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFA 266 (706)
Q Consensus 188 N-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~ 266 (706)
- |-|=..-.++|.. -.+..-+++.+.++.||++|..++++.-.++- .+++- ..+.+
T Consensus 93 ~~~~s~~~~~~~~~~----------~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~----~~~~~ 149 (268)
T cd07940 93 FIATSDIHLKYKLKK----------TREEVLERAVEAVEYAKSHGLDVEFSAEDATR---------TDLDF----LIEVV 149 (268)
T ss_pred EecCCHHHHHHHhCC----------CHHHHHHHHHHHHHHHHHcCCeEEEeeecCCC---------CCHHH----HHHHH
Confidence 3 3321111111110 11223356778999999999998876533331 13333 33455
Q ss_pred HHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 267 RICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 267 ~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
+.+.+.|-+ .|++|-| .|..+-+-++.+.+.
T Consensus 150 ~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 150 EAAIEAGAT--TINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHcCCC--EEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 556667766 4677777 666666655555554
No 51
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.67 E-value=5.2 Score=40.50 Aligned_cols=161 Identities=15% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCH--------HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cC
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGK--------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~--------~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ 183 (706)
...+++..++=+..|.++|+++|=++.+.. ...+.++.+++. +-++++.+...=..+.+..+.++ ++
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~----~~~~~~~~l~~~~~~~i~~a~~~g~~ 89 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL----VPNVKLQALVRNREKGIERALEAGVD 89 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc----cCCcEEEEEccCchhhHHHHHhCCcC
Confidence 445778888889999999999999998764 455666666664 44677777765446667777776 88
Q ss_pred ceee-CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec-CCCCCchhHHHhhCCChHHHHHH
Q 005248 184 KIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 184 kiRI-NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv-N~GSL~~~il~rygdt~eamVeS 261 (706)
-||| -+++=...+ ..+....+..-++..+.++.||++|..+++.+ ....- ..+++-
T Consensus 90 ~i~i~~~~s~~~~~----------~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~--------~~~~~~---- 147 (265)
T cd03174 90 EVRIFDSASETHSR----------KNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC--------KTDPEY---- 147 (265)
T ss_pred EEEEEEecCHHHHH----------HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC--------CCCHHH----
Confidence 8885 233310000 00111222334567779999999999999888 33320 022322
Q ss_pred HHHHHHHHHHCCCCcEEE--EEecCChhHHHHHHHHHHHh
Q 005248 262 AFEFARICRKLDFHNFLF--SMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 262 Ale~~~i~e~~~f~~ivi--S~KaSnv~~~i~ayrlla~~ 299 (706)
..+.++.+.++|.+.|.+ +.=...|..+-+-++.+.++
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 234667777888776654 33345566666666666655
No 52
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.64 E-value=0.98 Score=45.46 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHH---HH-Hhhh-cCceee-
Q 005248 116 DVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVA---LR-VAEC-FDKIRV- 187 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A---l~-a~~~-~~kiRI- 187 (706)
..+.-++=+..|.++|-+.+-+. .-+.++.+.++.+++.+.. .++.+-..-+.... ++ +.+. ++-+||
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN----ARLQALCRANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhccCCEEEec
Confidence 34555556678999999999999 5567889999999987665 33333222332222 22 2224 888884
Q ss_pred CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHH
Q 005248 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (706)
Q Consensus 188 NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~ 267 (706)
.|.|=....+. +....+.+-+++.++++.||++|..++++.-..+- -++ +-.+++++
T Consensus 88 ~~~s~~~~~~~----------~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~---------~~~----~~~~~~~~ 144 (237)
T PF00682_consen 88 ISVSDLHIRKN----------LNKSREEALERIEEAVKYAKELGYEVAFGCEDASR---------TDP----EELLELAE 144 (237)
T ss_dssp EETSHHHHHHH----------TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG---------SSH----HHHHHHHH
T ss_pred CcccHHHHHHh----------hcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc---------ccH----HHHHHHHH
Confidence 33332111111 11223444556777999999999999998855442 123 34456777
Q ss_pred HHHHCCCCcEEEEEecCC----hhHHHHHHHHHHHh
Q 005248 268 ICRKLDFHNFLFSMKASN----PVVMVQAYRLLVAE 299 (706)
Q Consensus 268 i~e~~~f~~iviS~KaSn----v~~~i~ayrlla~~ 299 (706)
.+.+.|.+.| +++-|. |..+-+-++.+.+.
T Consensus 145 ~~~~~g~~~i--~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 145 ALAEAGADII--YLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHHHT-SEE--EEEETTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHcCCeEE--EeeCccCCcCHHHHHHHHHHHHHh
Confidence 7777788754 666443 44444444444444
No 53
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.62 E-value=1.7 Score=43.84 Aligned_cols=143 Identities=22% Similarity=0.232 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHhhc-cCCcCcceeeccCCC----------HHH---HHH
Q 005248 114 TKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLV-QKNYNIPLVADIHFA----------PSV---ALR 177 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiV--Rvtv~~~~~A~al~~I~~~L~-~~g~~iPLVADIHF~----------~~~---Al~ 177 (706)
..+.+..+.|+.+..++||+.| -+...+....+.+..+++-.. ..++.+|+|.|.|.+ ..+ +..
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 4677888889999999999966 444444443333333333111 125789999998762 222 233
Q ss_pred Hhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChH
Q 005248 178 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (706)
Q Consensus 178 a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~e 256 (706)
|.+. +|=|-+++.. +. +.++++++ ...+|+ +-.|+... +|+
T Consensus 152 a~~~GaD~Ik~~~~~--~~----------------------~~~~~i~~---~~~~pv---v~~GG~~~-------~~~- 193 (235)
T cd00958 152 GAELGADIVKTKYTG--DA----------------------ESFKEVVE---GCPVPV---VIAGGPKK-------DSE- 193 (235)
T ss_pred HHHHCCCEEEecCCC--CH----------------------HHHHHHHh---cCCCCE---EEeCCCCC-------CCH-
Confidence 5554 6666665321 11 13344443 334665 44454311 122
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHH
Q 005248 257 GMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 297 (706)
Q Consensus 257 amVeSAle~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla 297 (706)
+.+++.++.+.+.|.+-+.++ +++.|+..++++++.+.
T Consensus 194 ---~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 194 ---EEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred ---HHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 346778888889999888776 78999999999888654
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=93.52 E-value=10 Score=39.07 Aligned_cols=211 Identities=12% Similarity=0.134 Sum_probs=122.0
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcCcceee------
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA------ 166 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~--------~A~al~~I~~~L~~~g~~iPLVA------ 166 (706)
.+|+-||+-...+-...+..+ ..++++|-+-|=+.+.+.. ..+.+..+++.|.+.|+.+.-++
T Consensus 2 ~~~~~~~~~~~~~~~~~~e~l---~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~ 78 (279)
T TIGR00542 2 KHPLGIYEKALPKGECWLERL---QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRR 78 (279)
T ss_pred CcccceehhhCCCCCCHHHHH---HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCcc
Confidence 367777777766555555544 4556789999988765532 25678889999999999887554
Q ss_pred -cc-CCCHH----------HHHH-Hhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCC
Q 005248 167 -DI-HFAPS----------VALR-VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (706)
Q Consensus 167 -DI-HF~~~----------~Al~-a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~ 232 (706)
.+ +.++. -+++ |.+. +..|+++++.+.. ++...+.++++.+.++++++.|+++|+
T Consensus 79 ~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 79 FPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYY-----------EEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred CcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCccccc-----------CcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 22442 2222 3333 8889886544321 112355678888899999999999998
Q ss_pred eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH----HHHHHHHHHHhhhcCCCCCc
Q 005248 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYP 308 (706)
Q Consensus 233 ~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~----~i~ayrlla~~~~~eg~~YP 308 (706)
.+-+= |+++ . .+.+.-+.++++++.|-.++.+-+=..|... ..+..++...++ +=
T Consensus 148 ~l~lE-~~~~-------~-------~~~t~~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~~i------~~ 206 (279)
T TIGR00542 148 TLAVE-IMDT-------P-------FMSSISKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMELQLGIDKI------VA 206 (279)
T ss_pred EEEEe-eCCC-------c-------hhcCHHHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHHHHhhhhE------EE
Confidence 66442 4421 1 2233334566678888778888776655321 222333333321 12
Q ss_pred cccc-----ccccCCCCCCchhhHHHHHHHhhcCCCceeEEec
Q 005248 309 LHLG-----VTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSL 346 (706)
Q Consensus 309 LHLG-----VTEAG~g~~G~IKSavGiG~LL~dGIGDTIRVSL 346 (706)
+|+. +.+=-+.-+|.|.=.-=+.+|...|---.+-+-.
T Consensus 207 vHikD~~~~~~~~~p~G~G~id~~~~~~aL~~~gy~G~l~iE~ 249 (279)
T TIGR00542 207 IHLKDTKPGQFKDVPFGEGCVDFERCFKTLKQLNYRGPFLIEM 249 (279)
T ss_pred EEeCCCCCCccCCcCCCCCccCHHHHHHHHHHhCCceeEEEEe
Confidence 2331 1111122345555555566677766655555543
No 55
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.43 E-value=0.6 Score=52.43 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC--CCC
Q 005248 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN--PGN 191 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN--PGN 191 (706)
+.+.+++..|.++|++++=|.+ .+....+.+++||+. --++|++|=-=.++.-|..++++ +|-|++- ||-
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~----~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~ 298 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKT----YPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGS 298 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHh----CCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCc
Confidence 4567888999999999999999 777888888888885 12699999555778999999997 9999954 774
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
+...+. +...-+. . -..+.++.+.|+++++||
T Consensus 299 ~~~t~~-~~~~g~p------~----~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 299 ICTTRI-VAGVGVP------Q----ITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred CCccce-ecCCCcc------H----HHHHHHHHHHHhhcCCeE
Confidence 432211 0000000 0 024456778889999887
No 56
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=93.35 E-value=0.11 Score=56.51 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=54.8
Q ss_pred CChhhHhHHHHHHHHHhhcccCC--c----eEeccC---CCCcccccHHHHHHHH----HHHhC--CCC-CCeEEEEccc
Q 005248 617 QDFDFLRDTSFNLLQGCRMRNTK--T----EYVSCP---SCGRTLFDLQEISAEI----REKTS--HLP-GVSIAIMGCI 680 (706)
Q Consensus 617 ~p~~ev~~~a~~ILqa~rlR~~k--t----e~ISCP---sCGRTlfDLq~~~a~I----k~~t~--hLk-glkIAIMGCI 680 (706)
.+.+++ .-.+..|+..|+-..+ . ..++|| +|..-++|-++++..| .+++. .|+ .+||+|=||.
T Consensus 74 I~~edl-~~i~~~L~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~ 152 (341)
T TIGR02066 74 SDESKI-QPLIDELEEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCA 152 (341)
T ss_pred CCHHHH-HHHHHHHHhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceecccccc
Confidence 344555 2446777877765432 1 477998 6888899988876544 34443 356 7899999999
Q ss_pred ccCccccccCceeeecc
Q 005248 681 VNGPGEMADADFGYVGG 697 (706)
Q Consensus 681 VNGPGEmadAD~GyvG~ 697 (706)
.|- +...-+|+|++|.
T Consensus 153 ~~C-~~~~~~Dig~~g~ 168 (341)
T TIGR02066 153 NMC-GGVHASDIAIVGI 168 (341)
T ss_pred ccc-cchhhcccccccc
Confidence 665 4455799999985
No 57
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.33 E-value=6.6 Score=40.79 Aligned_cols=147 Identities=13% Similarity=0.064 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHH
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRV 178 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvt-------------v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a 178 (706)
---+++..++-+..|.++|.+.+=+. -|...+.+.++.+++... +..+-...+-+. +.+-...|
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK--QAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc--CCEEEEEecCCccCHHHHHHH
Confidence 34567778888899999999999998 345566777888876532 233222222111 23434456
Q ss_pred hhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHH
Q 005248 179 AEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 179 ~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
.++ ++.|||- .... + -..+.+.++.||++|..+++.+-.. +..+|+
T Consensus 95 ~~~g~~~iri~-----~~~s--------------~----~~~~~~~i~~ak~~G~~v~~~~~~~---------~~~~~~- 141 (263)
T cd07943 95 ADLGVDVVRVA-----THCT--------------E----ADVSEQHIGAARKLGMDVVGFLMMS---------HMASPE- 141 (263)
T ss_pred HHcCCCEEEEE-----echh--------------h----HHHHHHHHHHHHHCCCeEEEEEEec---------cCCCHH-
Confidence 665 8999971 1110 0 0256789999999999888876222 113443
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEec----CChhHHHHHHHHHHHh
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYRLLVAE 299 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~Ka----Snv~~~i~ayrlla~~ 299 (706)
-.++.++.+.+.|-+. |++|- ..|..+-+-++.+.+.
T Consensus 142 ---~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 142 ---ELAEQAKLMESYGADC--VYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred ---HHHHHHHHHHHcCCCE--EEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 3455677788888874 67884 4566555555555554
No 58
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=93.18 E-value=0.3 Score=56.76 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=66.4
Q ss_pred hhhcCCc-eEEEeCC------CCChhhHhHHHHHHHHHhhcccCC--c--eEeccC---CCCcccccHHHHHHHHHHHhC
Q 005248 602 LVDGLGD-GLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK--T--EYVSCP---SCGRTLFDLQEISAEIREKTS 667 (706)
Q Consensus 602 L~dGIGD-tIrvslt------~~p~~ev~~~a~~ILqa~rlR~~k--t--e~ISCP---sCGRTlfDLq~~~a~Ik~~t~ 667 (706)
+++=.|+ .||++.. +.+.+.+. .-...|+..|+-... . ..++|| +|+--++|-+..+.+|-+++.
T Consensus 397 iA~~yg~g~irlT~~Qni~l~~V~~~~~~-~l~~~L~~~Gl~~~~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~ 475 (593)
T PRK09567 397 IAARYGDGEIRLTVWQNLLISGVPDADVA-AVEAAIEALGLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCE 475 (593)
T ss_pred HHHHhCCCEEEEeCCCCeEEcCCCHHHHH-HHHHHHHHcCCCCCCcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHH
Confidence 3444454 4888643 44455553 346778888875432 2 368996 799888888776666544433
Q ss_pred ---CCC-CCeEEEEcccccCccccccCceeeeccC
Q 005248 668 ---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA 698 (706)
Q Consensus 668 ---hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~ 698 (706)
.|+ ++||.|=|| -||=|-..-||+|++|..
T Consensus 476 ~~~~l~~~ikI~vSGC-pn~Ca~~~iaDIGfvG~~ 509 (593)
T PRK09567 476 PRVALDQPVNIHLTGC-HHSCAQHYIGDIGLIGAK 509 (593)
T ss_pred HhcCCCCCcEEEEECC-CccccccccCCEEEEeeE
Confidence 466 899999999 599999999999999963
No 59
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=93.09 E-value=1.3 Score=47.27 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVA 175 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~A 175 (706)
+||..+=+|++-.+....+.+..++|+.++.+.|...+.+-+....+.+.+..|++.+ + ++.|..|-| |++.-|
T Consensus 111 lGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~~~~d~~~v~avr~~~---~-~~~l~vDaN~~w~~~~A 186 (321)
T PRK15129 111 IGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLISERMVAIRSAV---P-DATLIVDANESWRAEGL 186 (321)
T ss_pred cCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhC---C-CCeEEEECCCCCCHHHH
Confidence 6775443344433333446788999999999999999999885556778888888763 2 577888887 566666
Q ss_pred HHHhhhcCceee-------CCCCCCcchhhcc--ccccchHHH--HHHHhhH----------------HhhHHHHHHHHH
Q 005248 176 LRVAECFDKIRV-------NPGNFADRRAQFE--QLEYTDDEY--QKELQHI----------------EEVFSPLVEKCK 228 (706)
Q Consensus 176 l~a~~~~~kiRI-------NPGNig~~~k~F~--~~~YtdeeY--~~El~~I----------------~~~f~~vv~~ak 228 (706)
+..++.++...| .|.++..-. .+. .-+..||+- ...+.++ -.+...+++.|+
T Consensus 187 ~~~~~~l~~~~i~~iEqP~~~~~~~~l~-~~~~~~pia~dEs~~~~~d~~~~~~~~d~v~~k~~~~GGi~~a~~i~~~a~ 265 (321)
T PRK15129 187 AARCQLLADLGVAMLEQPLPAQDDAALE-NFIHPLPICADESCHTRSSLKALKGRYEMVNIKLDKTGGLTEALALATEAR 265 (321)
T ss_pred HHHHHHHHhcCceEEECCCCCCcHHHHH-HhccCCCEecCCCCCCHHHHHHHHhhCCEEEeCchhhCCHHHHHHHHHHHH
Confidence 655544444433 344442211 111 122344441 1112222 124557888899
Q ss_pred HcCCeEEEecCC
Q 005248 229 KYGRAVRIGTNH 240 (706)
Q Consensus 229 e~~~~IRIGvN~ 240 (706)
++|+++=+|...
T Consensus 266 ~~gi~~~~g~~~ 277 (321)
T PRK15129 266 AQGFALMLGCML 277 (321)
T ss_pred HcCCcEEEecch
Confidence 999998887654
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=93.08 E-value=1 Score=42.73 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=97.3
Q ss_pred HHHHHcCCCEEEEecCCHHHH----HHHHHHHHhhccCCcCcceee-ccCCCH-------------------HHHH-HHh
Q 005248 125 MRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVA-DIHFAP-------------------SVAL-RVA 179 (706)
Q Consensus 125 ~~L~~aGceiVRvtv~~~~~A----~al~~I~~~L~~~g~~iPLVA-DIHF~~-------------------~~Al-~a~ 179 (706)
..++++|.+-|=+........ .-+.++++.|++.|+.++-+. ..++.+ +.++ .|.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 567889999999987776555 468889999999888854322 222111 1112 233
Q ss_pred hh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHH
Q 005248 180 EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (706)
Q Consensus 180 ~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eam 258 (706)
+. ++.+++.||.+.... ...+.+.++++.+.+.++++.|+++|+.|-+=...+....... +
T Consensus 82 ~lg~~~i~~~~g~~~~~~---------~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~-----~---- 143 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGP---------EDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPF-----S---- 143 (213)
T ss_dssp HHTBSEEEEECTTESSST---------TSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEES-----S----
T ss_pred HhCCCceeecCccccccc---------CCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchh-----h----
Confidence 33 889999999422111 1123477888999999999999999988777654444422110 1
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEecCChh----HHHHHHHHHHHh
Q 005248 259 VESAFEFARICRKLDFHNFLFSMKASNPV----VMVQAYRLLVAE 299 (706)
Q Consensus 259 VeSAle~~~i~e~~~f~~iviS~KaSnv~----~~i~ayrlla~~ 299 (706)
+-+..+++++.+-.++-+.+=.++.. ...++.+.+..+
T Consensus 144 ---~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 144 ---VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp ---HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred ---HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 34566777777777777777666544 334455555544
No 61
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=92.76 E-value=16 Score=39.98 Aligned_cols=184 Identities=15% Similarity=0.201 Sum_probs=118.1
Q ss_pred CCceeEEEceeecCCC---Cc-eEEEec----------cCCCCCCHH---HHHHHHHHHHH-cCCC-EEEEecCCHHHHH
Q 005248 86 RKTRTVMVGNVAIGSE---HP-IRVQTM----------TTNDTKDVA---GTVEEVMRIAD-QGAD-LVRITVQGKREAD 146 (706)
Q Consensus 86 r~Tr~V~VG~v~IGG~---~P-I~VQSM----------t~t~T~Dv~---atv~Qi~~L~~-aGce-iVRvtv~~~~~A~ 146 (706)
++-+.+.||+++|||. +| +.+=|| ..+-.-|=+ +-++|..+|.+ .|.- ++-|-..+.++
T Consensus 6 ~~q~v~~i~g~kiGGqpGe~ptvL~gsiFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~ea-- 83 (308)
T PRK00979 6 KEQKVYDIGGVKIGGQPGEYPTVLIGSIFYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGESPEA-- 83 (308)
T ss_pred cccEEEEECCEEECCCCCCCCceEEEEeeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHH--
Confidence 3567899999999964 44 556676 233345544 44566666644 4665 55665555544
Q ss_pred HHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhc------CceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhH
Q 005248 147 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF------DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (706)
Q Consensus 147 al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~------~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f 220 (706)
+.+..+.+. .-+++||+=|.- +|.+..+|++++ ++.=||-=|.-..+
T Consensus 84 -m~k~I~~v~-~~~d~Pl~IDSt-~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~------------------------ 136 (308)
T PRK00979 84 -MEKYIDFVS-EITDLPFLIDST-SPEARIAAAKYATELGLADRAIYNSINPSIEE------------------------ 136 (308)
T ss_pred -HHHHHHHHH-hcCCCCEEEeCC-CHHHHHHHHHHhhhcCCCCceEEEeccCCCCH------------------------
Confidence 333333332 248899999975 567767777764 35557776663211
Q ss_pred HHHHHHHHHcCCeEEEe--cCCCCCchhHHHhhCCChHHHHHHHHH--------HHHHHHHCCCCcEEEEEec---CChh
Q 005248 221 SPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFE--------FARICRKLDFHNFLFSMKA---SNPV 287 (706)
Q Consensus 221 ~~vv~~ake~~~~IRIG--vN~GSL~~~il~rygdt~eamVeSAle--------~~~i~e~~~f~~iviS~Ka---Snv~ 287 (706)
+.++.+|++|++.=|+ .|-| ++|+++=++-|.+ .++++++.|+.|+.|-.=+ |...
T Consensus 137 -eel~llk~yg~aavIvLa~d~~----------~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~ 205 (308)
T PRK00979 137 -EEIEALKESDIKAAIVLAFDPM----------DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSG 205 (308)
T ss_pred -HHHHHHHHhCCceEEEEEcCCC----------CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHH
Confidence 2258899999763344 3332 2377787888888 7889999999888774321 3366
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccccc
Q 005248 288 VMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (706)
Q Consensus 288 ~~i~ayrlla~~~~~eg~~YPLHLGVT 314 (706)
.++++-+.+-++ +.||.=+|+.
T Consensus 206 ~tl~aI~~iK~~-----~G~pt~~GlS 227 (308)
T PRK00979 206 AAIRAIFAVKAK-----FGYPVGCAPH 227 (308)
T ss_pred HHHHHHHHHHHH-----cCCCeEEEEe
Confidence 788888888877 6677666654
No 62
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.75 E-value=2.2 Score=46.16 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 005248 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN----PGNig~ 194 (706)
..++..|+++|+|+|=-| ++++ +.+.+..+|++ +++|+|||+-= ..=|+.+++. ++=||-- -||+..
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrp-ad~~~~~~K~~-----f~~~fmad~~~-l~EAlrai~~GadmI~Ttge~gtg~v~~ 158 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTP-ADEEYHIDKWD-----FTVPFVCGARN-LGEALRRIAEGAAMIRTKGEAGTGNVVE 158 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-hHHHHHHHHHH-----cCCCEEccCCC-HHHHHHHHHCCCCeeeccCCCCCccHHH
Confidence 889999999999999433 2333 33556666664 79999999964 4556666664 9999977 777754
Q ss_pred chhhcc--------ccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE-EecCCCCCchhHHHhhCCChHHHHHHHHHH
Q 005248 195 RRAQFE--------QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (706)
Q Consensus 195 ~~k~F~--------~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR-IGvN~GSL~~~il~rygdt~eamVeSAle~ 265 (706)
--+... -.-||+++-...-+...--|.-|-+.++..++|+= |.. |=+ .|| +.
T Consensus 159 av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~Ae--GGI---------~TP--------ed 219 (293)
T PRK04180 159 AVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAA--GGI---------ATP--------AD 219 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEe--CCC---------CCH--------HH
Confidence 222111 33578766222111123334444444455567761 121 111 255 24
Q ss_pred HHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHhhhcCCCCCccc
Q 005248 266 ARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLH 310 (706)
Q Consensus 266 ~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla~~~~~eg~~YPLH 310 (706)
++.+-+.|.+-+.+. +|+.|+..+.++++..... |+-|=-
T Consensus 220 aa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~~ 262 (293)
T PRK04180 220 AALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH-----YDDPEV 262 (293)
T ss_pred HHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH-----cCCHHH
Confidence 455556898888775 6889999999999998888 776643
No 63
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.56 E-value=6.3 Score=43.72 Aligned_cols=177 Identities=17% Similarity=0.232 Sum_probs=113.5
Q ss_pred CceeEEE----ceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cC--CHHHHHHHHH
Q 005248 87 KTRTVMV----GNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQ--GKREADACFE 150 (706)
Q Consensus 87 ~Tr~V~V----G~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----------v~--~~~~A~al~~ 150 (706)
....|.+ |++.|||++|+.|=.= ..+-.+-+..++-.++|.++|..++|=. .+ +.+.-+.|.+
T Consensus 81 ~~~~v~v~~~~~~v~iGg~~~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~ 159 (352)
T PRK13396 81 EASEVVVPTPNGPVPFGENHPVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAA 159 (352)
T ss_pred CCceEEEecCcCCeEecCCCeEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHH
Confidence 4455777 7899999997433221 5566778888999999999999999933 22 3455556666
Q ss_pred HHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc
Q 005248 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (706)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~ 230 (706)
++++ ..+|++.++|-...+- .+++++|-+-|--+|+-+ .+|++++.+.
T Consensus 160 ~~~e-----~Gl~~~tev~d~~~v~-~~~~~~d~lqIga~~~~n--------------------------~~LL~~va~t 207 (352)
T PRK13396 160 AREA-----TGLGIITEVMDAADLE-KIAEVADVIQVGARNMQN--------------------------FSLLKKVGAQ 207 (352)
T ss_pred HHHH-----cCCcEEEeeCCHHHHH-HHHhhCCeEEECcccccC--------------------------HHHHHHHHcc
Confidence 6664 8899999998655544 445779999999999955 3488888899
Q ss_pred CCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEE-E-----ec--CChhHHHHHHHHHHHhhh
Q 005248 231 GRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFS-M-----KA--SNPVVMVQAYRLLVAEMY 301 (706)
Q Consensus 231 ~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~iviS-~-----Ka--Snv~~~i~ayrlla~~~~ 301 (706)
|+||=+ ++=.. |++.+..+ .| .+.+.|-++|++= + .+ .+-..=+++--.|-++
T Consensus 208 ~kPVll------------k~G~~~t~ee~~~A-~e---~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~-- 269 (352)
T PRK13396 208 DKPVLL------------KRGMAATIDEWLMA-AE---YILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSL-- 269 (352)
T ss_pred CCeEEE------------eCCCCCCHHHHHHH-HH---HHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHh--
Confidence 999933 22122 55544433 33 3446666666653 1 21 2222224455555444
Q ss_pred cCCCCCcccccccccC
Q 005248 302 VHGWDYPLHLGVTEAG 317 (706)
Q Consensus 302 ~eg~~YPLHLGVTEAG 317 (706)
+++|.=.-.|-|.
T Consensus 270 ---~~lPVi~DpsH~~ 282 (352)
T PRK13396 270 ---THLPIMIDPSHGT 282 (352)
T ss_pred ---hCCCEEECCcccC
Confidence 6777744444444
No 64
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=92.32 E-value=3.4 Score=42.18 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=84.1
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcCcceee-ccC-------
Q 005248 106 VQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIH------- 169 (706)
Q Consensus 106 VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~--------~A~al~~I~~~L~~~g~~iPLVA-DIH------- 169 (706)
|++-+-....+.+. ++..++++|.+-|=+...+.. ..+.+..+++.|++.|+.++-++ +-|
T Consensus 7 ~~~~~~~~~~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~ 83 (284)
T PRK13210 7 IYEKALPKHLSWEE---RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGS 83 (284)
T ss_pred hhhhhcCCCCCHHH---HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCC
Confidence 34333333344444 455667889998888754321 24567889999999999988663 332
Q ss_pred CCH----------HHHHHHhh-h-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 170 FAP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 170 F~~----------~~Al~a~~-~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
.++ +.++++++ . ++.||+.++...... ...+..+++.+.+.++++.|+++|+ +|+
T Consensus 84 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv--~l~ 150 (284)
T PRK13210 84 RDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEE-----------KSEETRQRFIEGLAWAVEQAAAAQV--MLA 150 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCccccccc-----------ccHHHHHHHHHHHHHHHHHHHHhCC--EEE
Confidence 233 23333333 3 888888433211100 0123457778888999999999996 446
Q ss_pred c-CCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE
Q 005248 238 T-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (706)
Q Consensus 238 v-N~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~ 281 (706)
+ ||+. ..+.+.-+.+++++..+-.++.+-+
T Consensus 151 lE~~~~--------------~~~~~~~~~~~l~~~v~~~~~~~~~ 181 (284)
T PRK13210 151 VEIMDT--------------PFMNSISKWKKWDKEIDSPWLTVYP 181 (284)
T ss_pred EEecCc--------------cccCCHHHHHHHHHHcCCCceeEEe
Confidence 5 4421 1233333455666666555555443
No 65
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.28 E-value=1.1 Score=51.15 Aligned_cols=101 Identities=12% Similarity=0.222 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCc-CcceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 005248 119 GTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~-~iPLVADIHF~~~~Al~a~~~-~~kiRI--NPGN 191 (706)
...+.+.+|.+||+++|=|.. .+....+.+++||+. + ++||+|=-=.++.-|..++++ +|-|++ -||-
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~-----~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN-----YPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh-----CCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 448999999999999999998 666777889999885 4 599999555678888899998 999995 5884
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
+...+-.. ..-+ .--..+..+.+.|+++|+|+=
T Consensus 316 ~~~t~~~~-~~g~----------p~~~ai~~~~~~~~~~~v~vI 348 (495)
T PTZ00314 316 ICITQEVC-AVGR----------PQASAVYHVARYARERGVPCI 348 (495)
T ss_pred ccccchhc-cCCC----------ChHHHHHHHHHHHhhcCCeEE
Confidence 43211000 0000 001245567888999998873
No 66
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=92.15 E-value=0.38 Score=54.79 Aligned_cols=95 Identities=24% Similarity=0.343 Sum_probs=57.1
Q ss_pred hhhcCCc-eEEEeCC------CCChhhHhHHHHHH-HHHhhccc--CCceEeccCC---CCcccccHHHHHHHHHHHh--
Q 005248 602 LVDGLGD-GLLLEAP------GQDFDFLRDTSFNL-LQGCRMRN--TKTEYVSCPS---CGRTLFDLQEISAEIREKT-- 666 (706)
Q Consensus 602 L~dGIGD-tIrvslt------~~p~~ev~~~a~~I-Lqa~rlR~--~kte~ISCPs---CGRTlfDLq~~~a~Ik~~t-- 666 (706)
+++-.|+ .||++.. +.+.+.+..+...+ ++.+++.. .-...+|||+ |..-++|-+..+.++-+.+
T Consensus 344 ia~~yg~g~irlT~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~ 423 (513)
T PRK09566 344 LAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEPLLQKFSLEPGPLARGLVSCTGNQYCNFALIETKNRALALAKELDA 423 (513)
T ss_pred HHHHhCCCeEEEcCCCCEEEeCCCHHHHHHHHHHHhhccCCCCCCccccCceeCcCcccccccHhhHHHHHHHHHHHHHH
Confidence 3444454 4777543 34445553222221 23333321 1235789975 7777777655444443333
Q ss_pred -CCCC-CCeEEEEcccccCccccccCceeeecc
Q 005248 667 -SHLP-GVSIAIMGCIVNGPGEMADADFGYVGG 697 (706)
Q Consensus 667 -~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~ 697 (706)
.+++ ++||.|=||. |+=|-..-||+|++|.
T Consensus 424 ~~~lp~~~kI~iSGCp-n~C~~~~iaDIG~~G~ 455 (513)
T PRK09566 424 ELDLPQPVRIHWTGCP-NSCGQPQVADIGLMGT 455 (513)
T ss_pred hcCCCCceEEEEECCh-hhhhchhhCCEEEEEE
Confidence 3566 7999999996 7778888999999997
No 67
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=91.79 E-value=1.5 Score=48.48 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHhhccCCcCcceeec-------------cCCC
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVAD-------------IHFA 171 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~--------~~~A~al~~I~~~L~~~g~~iPLVAD-------------IHF~ 171 (706)
.|+......+.+.+++++|.+-|=+..++ .+....+.+|++.|.+.|..++.|+= .+-+
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d 106 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSND 106 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCC
Confidence 34455567788889999999999776322 23345688999999999999886552 1224
Q ss_pred H---HHHH----H----Hhhh-cCceeeCCCCCCcchhhccccccc-hHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 172 P---SVAL----R----VAEC-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 172 ~---~~Al----~----a~~~-~~kiRINPGNig~~~k~F~~~~Yt-deeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
+ +.|+ . |.+. +..|-+.||-.+. .|+ ..+|.+.+++..+.+..+.+.|+++|.-|+|++
T Consensus 107 ~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~--------~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 107 RSVRRYALRKVLRNMDLGAELGAETYVVWGGREGA--------EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--------cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 4 2222 2 2233 7789999996653 133 234788899999999999999999887788887
Q ss_pred CCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCc-EEEEE
Q 005248 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFSM 281 (706)
Q Consensus 239 N~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~-iviS~ 281 (706)
=. ++.+ +.+.-++.++-+.++++++.|-.+ +.+-+
T Consensus 179 Ep--~p~~------~~~~~ll~T~~~al~li~~v~~pn~vgl~l 214 (382)
T TIGR02631 179 EP--KPNE------PRGDILLPTVGHALAFIETLERPELFGLNP 214 (382)
T ss_pred cc--CCCC------CCcceecCCHHHHHHHHHHcCCccceeEEE
Confidence 22 1110 112235666666777778888766 34543
No 68
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=91.65 E-value=5.1 Score=48.32 Aligned_cols=218 Identities=20% Similarity=0.258 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGN 191 (706)
.|.+.+++-.+.=.+.|++|+=|-+. ..+.-+...++... .....++||+=|.-- ..+-..+.++ --|-=+|-=|
T Consensus 51 ~~y~~~l~iAr~Qv~~GA~ilDvn~d~~~~D~~~~m~~~l~~-~a~~~~vPlMIDSs~-~eviEagLk~~qGk~ivNSis 128 (842)
T COG1410 51 EDYDEALDVARQQVENGAQILDVNVDYVGRDGVADMVELLNL-LANEPTVPLMIDSSE-WEVIEAGLKCAQGKCIVNSIN 128 (842)
T ss_pred ccHHHHHHHHHHHHhcCCEEEEeeccccccccHHHHHHHHHH-hccCCCCceEEehhH-HHHHHHHHhhccCceeeeeee
Confidence 68899999999999999999988753 33444555555543 333577999999753 2233334443 3345578777
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~ 271 (706)
+-++ +++|...++.||+||.++.++.+ ++. ..++|++-=++=|-+...++++
T Consensus 129 ~eeg---------------------e~~f~~~~~LvkkYGaaVVvma~----DE~---GqA~t~eRK~eIakR~y~l~~~ 180 (842)
T COG1410 129 YEEG---------------------EERFEKVAELVKKYGAAVVVMTI----DEE---GQARTAERKFEIAKRAYILTEE 180 (842)
T ss_pred eccc---------------------HHHHHHHHHHHHHhCCcEEEEee----ccc---cccccHHHHHHHHHHHHHHHHh
Confidence 7554 45889999999999999999984 332 1126777777777777789999
Q ss_pred CCC--CcEEEEEec-----------CChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhHHH-------HH
Q 005248 272 LDF--HNFLFSMKA-----------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIG-------IG 331 (706)
Q Consensus 272 ~~f--~~iviS~Ka-----------Snv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavG-------iG 331 (706)
.|| +||+|-.=. .+..++|+|-|.+.+++ -+.=.-+||..-.-|..|.++.++. |+
T Consensus 181 ~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~L----P~~~tt~GvSNvSFslrg~~Re~lnavFLy~~i~ 256 (842)
T COG1410 181 VGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKEL----PHVLTTLGLSNVSFGLRGAVREVLNSVFLYEAIS 256 (842)
T ss_pred cCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHhC----ccceeccccccccCCCChHHHHhhhHHHHHHHHh
Confidence 999 778764321 34567899999988883 2455678999999999998887764 55
Q ss_pred HHhhcCCCceeEEecCCCCcccchHHHHHHHhhhh
Q 005248 332 TLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMR 366 (706)
Q Consensus 332 ~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~~~~r 366 (706)
.=|-.||=+..+.-+-+++..|.+-+.+-+-+..|
T Consensus 257 aGmD~aIVNa~kl~~yd~I~~elrea~edvvl~r~ 291 (842)
T COG1410 257 AGLDMAIVNAGKLLIYDNITAELREAVEDLILDRR 291 (842)
T ss_pred cCCchhhccccchhhhhccCHHHHHHHHHhccCcc
Confidence 55667777777777777777777665555545444
No 69
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=91.55 E-value=1.4 Score=49.31 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecCCH-----HHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhh--hcCc
Q 005248 115 KDVAGTVEEVMRIADQ--GADLVRITVQGK-----READACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~a--GceiVRvtv~~~-----~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~--~~~k 184 (706)
-|.+.+++-+.+|.++ +-.+ .|-=|=. +.-+.+.+++++++++|+++||++|=.. ++.-+...++ +++-
T Consensus 245 ~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~ 323 (408)
T TIGR01502 245 VDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHM 323 (408)
T ss_pred CCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCE
Confidence 3667778888888874 3344 7775442 3478899999999999999999999774 4666666655 5999
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec--CCCCCc
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSLS 244 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv--N~GSL~ 244 (706)
|.|-+...|.-. +..++++.|+++|+++=+|- |.++++
T Consensus 324 v~iK~~k~GGIt----------------------~a~kia~lA~~~Gi~~~~g~~~~es~I~ 363 (408)
T TIGR01502 324 VQIKTPDVGGVN----------------------NIARAIMYCKANGMGAYVGGTCNETNRS 363 (408)
T ss_pred EEeCccccCCHH----------------------HHHHHHHHHHHcCCEEEEeCCCCCCHHH
Confidence 999999999844 56779999999999999974 455553
No 70
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=91.43 E-value=0.43 Score=53.36 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=53.4
Q ss_pred ChhhHhHHHHHHHHHhhcccC--C---ceEeccCC---CCcccccHHHHHHHHHHHhC------CCC-CCeEEEEccccc
Q 005248 618 DFDFLRDTSFNLLQGCRMRNT--K---TEYVSCPS---CGRTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVN 682 (706)
Q Consensus 618 p~~ev~~~a~~ILqa~rlR~~--k---te~ISCPs---CGRTlfDLq~~~a~Ik~~t~------hLk-glkIAIMGCIVN 682 (706)
+.+.+ .-.|.-|+..|+-.. + -..++||+ |.--.+|-+.++.+|.+.+. .++ -+||+|-||- |
T Consensus 129 ~~e~l-e~i~~eL~~~G~dlggsG~~vRti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCp-n 206 (402)
T TIGR02064 129 QTPQL-QEIFEELTNLGTDLGGSGSNLRTPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCP-N 206 (402)
T ss_pred CHHHH-HHHHHHHhhcccCCCCCCCCccceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCccccccccccc-c
Confidence 33444 234566665555432 1 23679997 55557788888777776664 356 6899999997 6
Q ss_pred Cccccc-cCceeeeccCC
Q 005248 683 GPGEMA-DADFGYVGGAP 699 (706)
Q Consensus 683 GPGEma-dAD~GyvG~~~ 699 (706)
.=+..- -+|+|++|.-.
T Consensus 207 ~C~~~~~~~DIG~iG~~r 224 (402)
T TIGR02064 207 DCVAAIARSDFAVIGTWK 224 (402)
T ss_pred ccccceeccCceeecccc
Confidence 666664 89999999743
No 71
>PLN02431 ferredoxin--nitrite reductase
Probab=91.27 E-value=0.69 Score=53.93 Aligned_cols=56 Identities=27% Similarity=0.624 Sum_probs=43.7
Q ss_pred eEeccC---CCCcccccHHHHHHHHHHHhC---CCC-CCeEEEEcccccCccccccCceeeecc
Q 005248 641 EYVSCP---SCGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGG 697 (706)
Q Consensus 641 e~ISCP---sCGRTlfDLq~~~a~Ik~~t~---hLk-glkIAIMGCIVNGPGEmadAD~GyvG~ 697 (706)
..++|| .|+..+.|-...+.++-+.+. +++ .+||+|=||. |+=|...-||+|++|.
T Consensus 467 ~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~~~lp~k~kI~vSGCp-n~C~~~~iaDIG~vG~ 529 (587)
T PLN02431 467 GLVACTGNQFCGQAIIETKARALKVTEELERLVEVPRPVRMHWTGCP-NSCGQVQVADIGFMGC 529 (587)
T ss_pred ceeECCCccccCccHHHHHHHHHHHHHHHHHhhcCCCCeEEEEECCc-ccccccccccEEEEee
Confidence 689996 588888886666666654433 466 7899999996 7888889999999985
No 72
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=91.20 E-value=4.3 Score=41.07 Aligned_cols=146 Identities=11% Similarity=0.030 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeecc--C---------CCH--H--------
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI--H---------FAP--S-------- 173 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADI--H---------F~~--~-------- 173 (706)
.+++.+++++ +++|-+-|=+..|.. ....+|++.|.+.|..++.+..- + +++ .
T Consensus 14 ~~l~e~~~~~---~e~G~~~vEl~~~~~---~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 14 LPFLERFAAA---AQAGFTGVEYLFPYD---WDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred CCHHHHHHHH---HHcCCCEEEecCCcc---CCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 3555555554 577888887776653 34677788888889988766421 1 111 1
Q ss_pred HHH-HHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec-CCCCCchhHHHh
Q 005248 174 VAL-RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSY 250 (706)
Q Consensus 174 ~Al-~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv-N~GSL~~~il~r 250 (706)
-++ .|.+. +..||+.+|-.-.. ..+++..+...+.++++++.|+++|+.|=|=. |+-
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~-----------~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~--------- 147 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAG-----------VSPEEARATLVENLRYAADALDRIGLTLLIEPINSF--------- 147 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCC-----------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcc---------
Confidence 122 23333 78889988743211 11234456677888999999999996553321 221
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 005248 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (706)
Q Consensus 251 ygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~ 288 (706)
+.|..++.++-+.++++++.+-.++-+-+=.++...
T Consensus 148 --~~~~~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~~ 183 (254)
T TIGR03234 148 --DMPGFFLTTTEQALAVIDDVGRENLKLQYDLYHMQR 183 (254)
T ss_pred --cCCCChhcCHHHHHHHHHHhCCCCEeEeeehhhhhh
Confidence 223346788888889999998888888877777553
No 73
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.17 E-value=10 Score=41.71 Aligned_cols=156 Identities=14% Similarity=0.153 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee-CCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPG 190 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI-NPG 190 (706)
-.++.-++=+..|.++|.+.+=+..| +.++.+.++.|.+. +.+..+++=.--+.+-...|+++ ++.||| .|-
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE----GLNAEICSLARALKKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhc----CCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcC
Confidence 45677778888999999999999765 45677777777763 56677777655566666667776 888997 243
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e 270 (706)
|=..-+++|. .-.+..-+++.+.++.||++|..++++.-..+ + .+++- .++.++.+.
T Consensus 95 Sd~~~~~~~~----------~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~-------r--~~~~~----l~~~~~~~~ 151 (363)
T TIGR02090 95 SPIHLKYKLK----------KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT-------R--TDIDF----LIKVFKRAE 151 (363)
T ss_pred CHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC-------C--CCHHH----HHHHHHHHH
Confidence 2111111111 11223345677899999999999998863221 1 23433 344556677
Q ss_pred HCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 271 KLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 271 ~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
+.|-+. |+++-| .|..+-+.++.|.++
T Consensus 152 ~~g~~~--i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 152 EAGADR--INIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred hCCCCE--EEEeCCCCccCHHHHHHHHHHHhcc
Confidence 888876 455544 455555555555544
No 74
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.78 E-value=3 Score=41.28 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhh-cCceeeCCCCCC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIRVNPGNFA 193 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig 193 (706)
|.+..++-+..|.++|..+|.++..+....+.++.|+++ ++ +++-|.--.+..-+..|++. .+-| .-||.-
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~-----~~~~~iGag~v~~~~~~~~a~~~Ga~~i-~~p~~~- 86 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKE-----FPEALIGAGTVLTPEQADAAIAAGAQFI-VSPGLD- 86 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH-----CCCCEEEEEeCCCHHHHHHHHHcCCCEE-EcCCCC-
Confidence 577888889999999999999999999999999999986 44 55555444434444555554 5555 334321
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN 239 (706)
.++++.|++++.++=+|+-
T Consensus 87 ---------------------------~~~~~~~~~~~~~~i~gv~ 105 (190)
T cd00452 87 ---------------------------PEVVKAANRAGIPLLPGVA 105 (190)
T ss_pred ---------------------------HHHHHHHHHcCCcEECCcC
Confidence 3589999999999988883
No 75
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.57 E-value=13 Score=41.10 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHH-HHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCce
Q 005248 115 KDVAGTVEEVMRIADQGADLVRIT-------VQGKREA-DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKI 185 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvt-------v~~~~~A-~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ki 185 (706)
-.++.-++=+.+|.++|.+.+-++ +|.+.++ +.+..|++ + .+..++.++ . |.+=+..|+++ ++.|
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~-~--~~~~~~~l~--~-n~~die~A~~~g~~~v 138 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-L--EGARFPVLT--P-NLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh-c--cCCceeEEc--C-CHHHHHHHHHcCcCEE
Confidence 457888899999999999999998 4555454 45677765 2 234555443 3 66666777787 8888
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec--CCCCCchhHHHhhCCChHHHHHHHH
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv--N~GSL~~~il~rygdt~eamVeSAl 263 (706)
.|-..- + + .|.. .....-.+..-+++.++|+.||++|..+|..+ -.|.-. +|.++ ++-.+
T Consensus 139 ~i~~s~--S-d-~h~~-----~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~---~~~l~ 200 (347)
T PLN02746 139 AVFASA--S-E-SFSK-----SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP---PSKVA 200 (347)
T ss_pred EEEEec--C-H-HHHH-----HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC---HHHHH
Confidence 865321 0 0 0110 00112234455667789999999999998443 334321 12222 34455
Q ss_pred HHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 264 EFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
+.++.+.+.|-+. |+++-+ +|..+.+-++.|.++
T Consensus 201 ~~~~~~~~~Gad~--I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 201 YVAKELYDMGCYE--ISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHcCCCE--EEecCCcCCcCHHHHHHHHHHHHHh
Confidence 6777788889885 455544 455555555555443
No 76
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.41 E-value=12 Score=41.29 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH--HHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC-C
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA--DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-P 189 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A--~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN-P 189 (706)
.-.++.-++=+..|.++|.+.+=+..|...+. +.+..|.+. +.+..+++-..-+.+-...|+++ ++.|||- |
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~----~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKL----GLNASILALNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhc----CCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEc
Confidence 34567777778889999999999999866544 477777653 56666777665555555566665 7878762 2
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
-+=..-+++ +..-.+..-+++.+.|+.||++|..++++.-.++- .++ +-.++.++.+
T Consensus 98 ~Sd~h~~~~----------~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r---------~~~----~~l~~~~~~~ 154 (378)
T PRK11858 98 TSDIHIKHK----------LKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR---------TDL----DFLIEFAKAA 154 (378)
T ss_pred CCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC---------CCH----HHHHHHHHHH
Confidence 221110110 11123445567778999999999999987422221 122 3445566677
Q ss_pred HHCCCCcEEEE--EecCChhHHHHHHHHHHHh
Q 005248 270 RKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 270 e~~~f~~iviS--~KaSnv~~~i~ayrlla~~ 299 (706)
.+.|-+.|.|. +=...|..+-+..+.|.+.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 77887764442 1223455555555555544
No 77
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=90.26 E-value=23 Score=36.26 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=109.0
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee----cc---CC-----C---------HHHHHHHhh-h
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DI---HF-----A---------PSVALRVAE-C 181 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA----DI---HF-----~---------~~~Al~a~~-~ 181 (706)
+.+++++|-+-|=+..+.. ..+.++++.|.+.|..++..+ |. ++ . -+-+++.++ .
T Consensus 21 l~~~a~~Gf~~VEl~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 97 (258)
T PRK09997 21 FEKAAQCGFRGVEFMFPYD---YDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARAL 97 (258)
T ss_pred HHHHHHhCCCEEEEcCCCC---CCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 5566777877777765543 347778888888899987542 21 10 0 012222333 2
Q ss_pred -cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec---CCCCCchhHHHhhCCChHH
Q 005248 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT---NHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 182 -~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv---N~GSL~~~il~rygdt~ea 257 (706)
+..|++.+|..... +++++ ..+...+.+.++.+.|+++|+. |++ ||-.. +.-
T Consensus 98 ga~~i~~~~g~~~~~--------~~~~~---~~~~~~~~l~~l~~~a~~~Gv~--l~lE~~n~~~~-----------~~~ 153 (258)
T PRK09997 98 GNKKINCLVGKTPAG--------FSSEQ---IHATLVENLRYAANMLMKEDIL--LLIEPINHFDI-----------PGF 153 (258)
T ss_pred CCCEEEECCCCCCCC--------CCHHH---HHHHHHHHHHHHHHHHHHcCCE--EEEEeCCCcCC-----------CCC
Confidence 77889888865221 22233 2456667888899999999854 566 55111 111
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEecCChhH----HHHHHHHHHHhhhcCCCCCccccccccc---CCCCCCchhhHHHH
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYPLHLGVTEA---GEGEDGRMKSAIGI 330 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~KaSnv~~----~i~ayrlla~~~~~eg~~YPLHLGVTEA---G~g~~G~IKSavGi 330 (706)
++.++-+.++++++.+-.++.+-+=..+... ..+.++.+..+ =.|+=+.+. +..-+|.|-=.-=+
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~r--------i~~vHikD~~~~~~~G~G~id~~~i~ 225 (258)
T PRK09997 154 HLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWADK--------IGHLQIADNPHRGEPGTGEINYDYLF 225 (258)
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEeEHHHhhhcCCcHHHHHHHhhCc--------ccEEEeCCCCCCCCCCCCcCCHHHHH
Confidence 3344455667888888888888887766543 23444444333 234333332 12223445444444
Q ss_pred HHHhhcCCCceeEEecCCCCcccchHHHH
Q 005248 331 GTLLQDGLGDTIRVSLTEPPEKEIDPCRR 359 (706)
Q Consensus 331 G~LL~dGIGDTIRVSLT~dP~~EV~va~~ 359 (706)
.+|-..|.--. +|+--+|.+-+..+.+
T Consensus 226 ~aL~~~Gy~G~--~~~E~~p~~~~~~s~~ 252 (258)
T PRK09997 226 KVIENSDYNGW--VGCEYKPQTTTEAGLR 252 (258)
T ss_pred HHHHHhCCCeE--EEEEEecCCCcHHHHH
Confidence 45555443222 3444455554444443
No 78
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=90.16 E-value=1.2 Score=51.63 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCChhhHhHHHHHHHHHhhcccCCc------eEeccC--CCCcccccHHHHHHHHHHHhC--------------------
Q 005248 616 GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCP--SCGRTLFDLQEISAEIREKTS-------------------- 667 (706)
Q Consensus 616 ~~p~~ev~~~a~~ILqa~rlR~~kt------e~ISCP--sCGRTlfDLq~~~a~Ik~~t~-------------------- 667 (706)
+.+.+.+. -.+.-|++.|+=...+ ++++|| .|+.-++|.+.++.+|.+.+.
T Consensus 119 gI~~~~l~-~i~~~L~~~gl~t~~a~gd~~RNV~~~p~~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~ 197 (569)
T PRK13504 119 GILKKNLK-PVIQTINSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFS 197 (569)
T ss_pred CCchHhHH-HHHHHHHHcCCCcccccCCCCCceecCCCcccccchHHHHHHHHHHHHHhccccchhHHhhhcCccccccc
Confidence 34444443 2234444555533211 478997 789999999999999987542
Q ss_pred -----------CCC-CCeEEEEcccccCccccccCceeeecc
Q 005248 668 -----------HLP-GVSIAIMGCIVNGPGEMADADFGYVGG 697 (706)
Q Consensus 668 -----------hLk-glkIAIMGCIVNGPGEmadAD~GyvG~ 697 (706)
.|| -.||||=||. |.-+..--+|+|+++.
T Consensus 198 ~~~~~~~~~~~~LPrKfKiavsgc~-~~c~~~~~~DiG~~~~ 238 (569)
T PRK13504 198 GTEEEPIYGKTYLPRKFKIAVAVPP-DNDVDVYANDLGFVAI 238 (569)
T ss_pred ccccCcccccCCCCCceEEEEEcCC-ccccCceecceEEEEE
Confidence 477 7899999998 6667888899999986
No 79
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=89.68 E-value=2.1 Score=45.79 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=78.8
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (706)
+|.+.+++|=- | ..-+.+.+++-+++|.+.|.+.+==-++. .+.+.++.++++ +++|+++|=++ ++.-+.
T Consensus 186 ~g~~~~l~vDa--N-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~-~~~~~~~~l~~~-----~~ipi~~dE~~~~~~~~~ 256 (357)
T cd03316 186 VGPDVDLMVDA--N-GRWDLAEAIRLARALEEYDLFWFEEPVPP-DDLEGLARLRQA-----TSVPIAAGENLYTRWEFR 256 (357)
T ss_pred hCCCCEEEEEC--C-CCCCHHHHHHHHHHhCccCCCeEcCCCCc-cCHHHHHHHHHh-----CCCCEEeccccccHHHHH
Confidence 56666777721 1 12356777777777777777665322332 245566777774 78999999764 677777
Q ss_pred HHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC
Q 005248 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240 (706)
Q Consensus 177 ~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~ 240 (706)
.+++ .+|-|.|-|...|.-. +..++.+.|+++|+++=+|...
T Consensus 257 ~~i~~~~~d~v~~k~~~~GGi~----------------------~~~~i~~~a~~~g~~~~~~~~~ 300 (357)
T cd03316 257 DLLEAGAVDIIQPDVTKVGGIT----------------------EAKKIAALAEAHGVRVAPHGAG 300 (357)
T ss_pred HHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEeccCCC
Confidence 7776 4999999999998733 5678999999999998776543
No 80
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.55 E-value=17 Score=38.23 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc-Ccceee-------ccCCCHH-HHHHHhhh-
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAPS-VALRVAEC- 181 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~-~iPLVA-------DIHF~~~-~Al~a~~~- 181 (706)
...++.-++=+..|.++|.+.+-+..| +.++.+.++.+++. +. +.++++ |+..... -...|+++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g 91 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKL----KLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAG 91 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHc----CCCCcEEEEEecccccCCCccchHHHHHHHhCC
Confidence 345677777888899999999999764 56666667666553 32 334443 4443222 22345555
Q ss_pred cCceeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 182 FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 182 ~~kiRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
++.|||- |..=...++.|. . ..++.-+++.+.++.||++|..++.+.= .+ ...+-.++ +
T Consensus 92 ~~~i~i~~~~sd~~~~~~~~---~-------~~~~~~~~~~~~i~~ak~~G~~v~~~~~--~~----~d~~~~~~----~ 151 (273)
T cd07941 92 TPVVTIFGKSWDLHVTEALG---T-------TLEENLAMIRDSVAYLKSHGREVIFDAE--HF----FDGYKANP----E 151 (273)
T ss_pred CCEEEEEEcCCHHHHHHHcC---C-------CHHHHHHHHHHHHHHHHHcCCeEEEeEE--ec----cccCCCCH----H
Confidence 8888863 322111011010 1 1133345777899999999988766421 11 11111233 3
Q ss_pred HHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 261 SAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 261 SAle~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
-.++.++.+.+.|.+. |+++-| .|..+-+-++.+.+.
T Consensus 152 ~~~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 152 YALATLKAAAEAGADW--LVLCDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 4456677778889885 556643 455544444444443
No 81
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=89.34 E-value=3.4 Score=42.55 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=77.9
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (706)
+|.+-+++|=- | ..-+.+.+++-+++|.+.|-+.+=--++. .+.+.+.++++. +++|+.+|=++ ++.-+.
T Consensus 126 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~l~~~-----~~ipia~dE~~~~~~~~~ 196 (265)
T cd03315 126 VGDDAELRVDA--N-RGWTPKQAIRALRALEDLGLDYVEQPLPA-DDLEGRAALARA-----TDTPIMADESAFTPHDAF 196 (265)
T ss_pred cCCCCEEEEeC--C-CCcCHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhh-----CCCCEEECCCCCCHHHHH
Confidence 45555565532 1 12346777777788888887776443332 345667777774 88999999775 456565
Q ss_pred HHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 177 ~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
..++ .++-|.+-|...|.-. .+.++++.|+++|+++=+|.
T Consensus 197 ~~i~~~~~d~v~~k~~~~GGi~----------------------~~~~~~~~A~~~gi~~~~~~ 238 (265)
T cd03315 197 RELALGAADAVNIKTAKTGGLT----------------------KAQRVLAVAEALGLPVMVGS 238 (265)
T ss_pred HHHHhCCCCEEEEecccccCHH----------------------HHHHHHHHHHHcCCcEEecC
Confidence 5554 5999999999999833 56789999999999998873
No 82
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=89.18 E-value=1.9 Score=43.63 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceee
Q 005248 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
++..|.+-.-....|-+.+...+.+.++.+.||||||+++. +.++...+-+...+++... ++|+||
T Consensus 112 ~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~-~~p~i~ 179 (225)
T cd00502 112 GNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLY-DIPLIA 179 (225)
T ss_pred CCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcC-CCCEEE
Confidence 34455554445555668888889999999999999999976 4566666666666654433 677754
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=89.11 E-value=4.3 Score=41.63 Aligned_cols=141 Identities=12% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcCcceee-ccCC-------CHH----------H
Q 005248 121 VEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIHF-------APS----------V 174 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~~--------~A~al~~I~~~L~~~g~~iPLVA-DIHF-------~~~----------~ 174 (706)
.+++..++++|-+-|=+.+.+.. ..+.+..|++.|++.|..++-++ ..|. ++. .
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 103 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK 103 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 35566677889988888765432 35568889999999999987654 3442 322 1
Q ss_pred HHH-Hhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC
Q 005248 175 ALR-VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (706)
Q Consensus 175 Al~-a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg 252 (706)
+++ |.+. +..|++.++.... +.+..+..++..+.++++.+.|+++|+.|-|= ||++
T Consensus 104 ~i~~a~~lG~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE-~~~~---------- 161 (283)
T PRK13209 104 AIQLAQDLGIRVIQLAGYDVYY-----------EQANNETRRRFIDGLKESVELASRASVTLAFE-IMDT---------- 161 (283)
T ss_pred HHHHHHHcCCCEEEECCccccc-----------cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEe-ecCC----------
Confidence 223 3333 7888886543221 11123445677788999999999999766443 2311
Q ss_pred CChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 005248 253 DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (706)
Q Consensus 253 dt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~ 287 (706)
.++.+.-+.++++++.+-.++-+.+=..|..
T Consensus 162 ----~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 162 ----PFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred ----cccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 1222333566667777666666665554443
No 84
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=88.68 E-value=15 Score=39.81 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCC----CCCCc
Q 005248 121 VEEVMRIADQGADLVRITV-QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP----GNFAD 194 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv-~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINP----GNig~ 194 (706)
..++..|+++|||||=-|- +.+ ..+-+..||++ +++|++||+-= ..=|+.|++. +|-||--= ||+..
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP-~~~~~~~iK~~-----~~~l~MAD~st-leEal~a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP-ADEEHHIDKHK-----FKVPFVCGARN-LGEALRRISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-HHHHHHHHHHH-----cCCcEEccCCC-HHHHHHHHHCCCCEEEecCCCCCCcHHH
Confidence 8899999999999994322 223 45567777774 79999999963 4556667765 88888542 23110
Q ss_pred chhh--------ccccccchHH-HHHHHhhHHhhHHHHHHHHHHcCCeEE-EecCCCCCchhHHHhhCCChHHHHHHHHH
Q 005248 195 RRAQ--------FEQLEYTDDE-YQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 195 ~~k~--------F~~~~Ytdee-Y~~El~~I~~~f~~vv~~ake~~~~IR-IGvN~GSL~~~il~rygdt~eamVeSAle 264 (706)
--+. -...-||+++ |.. -....--|.-|-+.++..++|+= |.. |-+ .|| +
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~-~~~~~~d~elLk~l~~~~~iPVV~iAe--GGI---------~Tp--------e 209 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAV-AKEIQAPYELVKETAKLGRLPVVNFAA--GGV---------ATP--------A 209 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhh-hcccCCCHHHHHHHHHhcCCCeEEEEe--CCC---------CCH--------H
Confidence 0000 0123477666 221 11112333334444444567862 111 212 244 2
Q ss_pred HHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248 265 FARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (706)
Q Consensus 265 ~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~ 320 (706)
.++.+-+.|-+-+++. +++.|+..+++.++....+ |+-|-- |.|+-+++
T Consensus 210 na~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~-----~~~~~~--~~e~~~~~ 261 (283)
T cd04727 210 DAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH-----YDDPEI--LAEVSEGL 261 (283)
T ss_pred HHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh-----cCCHHH--HHHHHccc
Confidence 4455556888888876 6788999999999887777 655533 34554443
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.66 E-value=14 Score=38.96 Aligned_cols=146 Identities=19% Similarity=0.177 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH-----------HHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhhh-
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE-----------ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC- 181 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~-----------A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~~- 181 (706)
.+.+..++=+..|.++|-+++=+..|...+ .+.++.|.+.. +.+.++-..++.+. +-.....|.+.
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS-KGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh-ccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 345566666778999999999999776532 56777777642 22455666667764 44545556665
Q ss_pred cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHH
Q 005248 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeS 261 (706)
++-|||- + .... -++..+.++.||++|..++++.-.-+ +-+++-+
T Consensus 96 v~~iri~---~--~~~~------------------~~~~~~~i~~ak~~G~~v~~~~~~a~---------~~~~~~~--- 140 (266)
T cd07944 96 VDMIRVA---F--HKHE------------------FDEALPLIKAIKEKGYEVFFNLMAIS---------GYSDEEL--- 140 (266)
T ss_pred cCEEEEe---c--cccc------------------HHHHHHHHHHHHHCCCeEEEEEEeec---------CCCHHHH---
Confidence 8999984 1 1111 23677899999999998887753332 1244444
Q ss_pred HHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 262 AFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 262 Ale~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
++.++.+.+.|.+. |+++-| +|..+-+-++.|.+.
T Consensus 141 -~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 141 -LELLELVNEIKPDV--FYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred -HHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 45667777888875 455654 566555556665554
No 86
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=88.50 E-value=42 Score=36.89 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC-CC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-PG 190 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~--A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN-PG 190 (706)
..++..++=+..|.++|.+.+=+..|...+ .+.++.|++. +-+..+++=..-+.+-...|+++ ++.|||- |-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVAL----GLPARLMAWCRARDADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHc----CCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEcc
Confidence 556777788888999999999999886544 5678888764 23344554444455555566665 8888863 22
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e 270 (706)
+=..-+++ +..-.+..-+++.+.|+.||++|..++++.-.++- .++ +-.++.++.+.
T Consensus 96 Sd~~~~~~----------~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r---------~~~----~~l~~~~~~~~ 152 (365)
T TIGR02660 96 SDLQIEAK----------LRKDRAWVLERLARLVSFARDRGLFVSVGGEDASR---------ADP----DFLVELAEVAA 152 (365)
T ss_pred CHHHHHHH----------hCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC---------CCH----HHHHHHHHHHH
Confidence 11000111 11112334456778999999999999887543322 123 33444555666
Q ss_pred HCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 271 KLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 271 ~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
+.|-+. |+++-| .|..+-+-.+.|.+.
T Consensus 153 ~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 153 EAGADR--FRFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred HcCcCE--EEEcccCCCCCHHHHHHHHHHHHHh
Confidence 778765 455544 444444444444433
No 87
>PLN02431 ferredoxin--nitrite reductase
Probab=88.29 E-value=1.6 Score=51.05 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCChhhHhHHHHHHHHHhhcccCCc------eEeccCCCCc---ccccHHHHHHHHHHHh----------CCCC-CCeEE
Q 005248 616 GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCPSCGR---TLFDLQEISAEIREKT----------SHLP-GVSIA 675 (706)
Q Consensus 616 ~~p~~ev~~~a~~ILqa~rlR~~kt------e~ISCPsCGR---TlfDLq~~~a~Ik~~t----------~hLk-glkIA 675 (706)
+.+.+.+. -.+.-|+++||-...+ +++.||.-|. -++|...++.+|.+.+ .+|| -.|||
T Consensus 181 gI~~ed~p-~i~~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkia 259 (587)
T PLN02431 181 GVVLPDVP-AILKGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVC 259 (587)
T ss_pred CCCHHHHH-HHHHHHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEE
Confidence 44455553 3456778888875544 3789998666 4799999999998775 3688 68999
Q ss_pred EEcccccCccccccCceeeeccC
Q 005248 676 IMGCIVNGPGEMADADFGYVGGA 698 (706)
Q Consensus 676 IMGCIVNGPGEmadAD~GyvG~~ 698 (706)
|=||.-|. ....-.|+|+++..
T Consensus 260 vsG~~~~~-~~~~~nDigf~~~~ 281 (587)
T PLN02431 260 VVGSHDLF-EHPHINDLAYMPAT 281 (587)
T ss_pred EecCcccc-ccccccceEEEEEE
Confidence 99998554 44455788888763
No 88
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.18 E-value=7.5 Score=40.02 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHH-------HHHHHHHHHHhhccC-CcCcceeecc-----CCCH----------HHHH
Q 005248 120 TVEEVMRIADQGADLVRITVQGKR-------EADACFEIKNSLVQK-NYNIPLVADI-----HFAP----------SVAL 176 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~-------~A~al~~I~~~L~~~-g~~iPLVADI-----HF~~----------~~Al 176 (706)
.-+.+..++++|-+.|=+.+.... ..+.+.++++.+.+. +..+.+.+.. |.++ +.++
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 91 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEI 91 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHH
Confidence 345667778899988866543221 236677777777777 6565555432 3332 2222
Q ss_pred HHh-hh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCC
Q 005248 177 RVA-EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS 254 (706)
Q Consensus 177 ~a~-~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt 254 (706)
+.+ +. +..|++.||+.... ..++..+...+.++++++.|+++|+.+-|=. ++.-.
T Consensus 92 ~~A~~lG~~~v~~~~g~~~~~------------~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn-~~~~~---------- 148 (279)
T cd00019 92 ERCEELGIRLLVFHPGSYLGQ------------SKEEGLKRVIEALNELIDKAETKGVVIALET-MAGQG---------- 148 (279)
T ss_pred HHHHHcCCCEEEECCCCCCCC------------CHHHHHHHHHHHHHHHHHhccCCCCEEEEeC-CCCCC----------
Confidence 333 33 88889999976421 1233446667888889999999987654433 22111
Q ss_pred hHHHHHHHHHHHHHHHHCC-CCcEEEEEecCC
Q 005248 255 PRGMVESAFEFARICRKLD-FHNFLFSMKASN 285 (706)
Q Consensus 255 ~eamVeSAle~~~i~e~~~-f~~iviS~KaSn 285 (706)
.-++.++-+..+++++.+ -.++.+-+=..|
T Consensus 149 -~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 149 -NEIGSSFEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred -CCCCCCHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 124555666778888887 667766665555
No 89
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.12 E-value=40 Score=35.98 Aligned_cols=168 Identities=11% Similarity=0.156 Sum_probs=107.2
Q ss_pred eeEEEceeecCCCC----ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec------------CCHHHHHHHHHHH
Q 005248 89 RTVMVGNVAIGSEH----PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIK 152 (706)
Q Consensus 89 r~V~VG~v~IGG~~----PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv------------~~~~~A~al~~I~ 152 (706)
..|.++++.+||+. |-+|+|- +-+.+-.+.+.++|..++|=.+ ++.+.-+.|.+.+
T Consensus 4 ~~~~~~~~~~~~~~~iaGPC~vEs~--------e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~ 75 (250)
T PRK13397 4 IMSDFQNKTCSKNNFIVGPCSIESY--------DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVC 75 (250)
T ss_pred ceEEecCccCCCCcEEeccCccCCH--------HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHH
Confidence 46888999888774 5556553 3334444458889999999653 3456566666666
Q ss_pred HhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCC
Q 005248 153 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (706)
Q Consensus 153 ~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~ 232 (706)
++ ..+|+++|+|-...+.+. ++.+|-+-|--+|+-+ .++++++.+.|+
T Consensus 76 ~~-----~Gl~~~Tev~d~~~v~~~-~e~vdilqIgs~~~~n--------------------------~~LL~~va~tgk 123 (250)
T PRK13397 76 QE-----FGLLSVSEIMSERQLEEA-YDYLDVIQVGARNMQN--------------------------FEFLKTLSHIDK 123 (250)
T ss_pred HH-----cCCCEEEeeCCHHHHHHH-HhcCCEEEECcccccC--------------------------HHHHHHHHccCC
Confidence 64 889999999876655544 5689999999999854 358888888999
Q ss_pred eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE-------ecCChhHHHHHHHHHHHhhhcCCC
Q 005248 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGW 305 (706)
Q Consensus 233 ~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~-------KaSnv~~~i~ayrlla~~~~~eg~ 305 (706)
||=|=. | .+.|++.| +.|.|+ +.+.|-++|++== ...+-..-+.+...|.++ +
T Consensus 124 PVilk~--G---------~~~t~~e~-~~A~e~---i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~-----~ 183 (250)
T PRK13397 124 PILFKR--G---------LMATIEEY-LGALSY---LQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQK-----T 183 (250)
T ss_pred eEEEeC--C---------CCCCHHHH-HHHHHH---HHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHH-----h
Confidence 994332 2 01344443 334443 4466767766642 111102223444455555 6
Q ss_pred CCccccccccc
Q 005248 306 DYPLHLGVTEA 316 (706)
Q Consensus 306 ~YPLHLGVTEA 316 (706)
++|.=.|.|-+
T Consensus 184 ~lPVivd~SHs 194 (250)
T PRK13397 184 DLPIIVDVSHS 194 (250)
T ss_pred CCCeEECCCCC
Confidence 78877888865
No 90
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=87.96 E-value=5.8 Score=42.92 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=88.4
Q ss_pred ceeecCCCCceEEEe-ccCCCCCC-HHHHHHHHHH-HHHcCCCEEEEecC--------------C-HHHHHHHHHHHHhh
Q 005248 94 GNVAIGSEHPIRVQT-MTTNDTKD-VAGTVEEVMR-IADQGADLVRITVQ--------------G-KREADACFEIKNSL 155 (706)
Q Consensus 94 G~v~IGG~~PI~VQS-Mt~t~T~D-v~atv~Qi~~-L~~aGceiVRvtv~--------------~-~~~A~al~~I~~~L 155 (706)
|++.|||+.|..|=. =+...+.| +-.+.+++++ ..++|+.++|=+.= + .+--+-|.+++++
T Consensus 7 ~~~~ig~~~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~- 85 (281)
T PRK12457 7 PGITVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKAR- 85 (281)
T ss_pred CCeEEcCCCceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Confidence 458888887654322 22222333 2344445555 35699999987432 3 4667788888886
Q ss_pred ccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
+.+|+|.|+|-..++ ..+++++|=+-|--=|.- + ..|+++|.+.|+||=
T Consensus 86 ----~GlpvvTeV~~~~~~-~~~ae~vDilQIgAr~~r-------------------------n-tdLL~a~~~t~kpV~ 134 (281)
T PRK12457 86 ----FGVPVITDVHEVEQA-APVAEVADVLQVPAFLAR-------------------------Q-TDLVVAIAKTGKPVN 134 (281)
T ss_pred ----HCCceEEEeCCHHHH-HHHhhhCeEEeeCchhhc-------------------------h-HHHHHHHhccCCeEE
Confidence 899999999975554 566788999999665652 1 258888999999982
Q ss_pred EecCCCCCchhHHHhhC--CChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 236 IGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 236 IGvN~GSL~~~il~ryg--dt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
| .| | -+|+.|.-+| +.+...|=++|++
T Consensus 135 l------------Kr-Gqf~s~~e~~~aa----e~i~~~Gn~~vil 163 (281)
T PRK12457 135 I------------KK-PQFMSPTQMKHVV----SKCREAGNDRVIL 163 (281)
T ss_pred e------------cC-CCcCCHHHHHHHH----HHHHHcCCCeEEE
Confidence 2 22 4 5676655443 3445556666654
No 91
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=87.63 E-value=34 Score=34.94 Aligned_cols=142 Identities=11% Similarity=-0.027 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHhhccCCcCcceeeccC----C-----CHH---HH------
Q 005248 120 TVEEVMRIADQGADLVRITVQ------GKREADACFEIKNSLVQKNYNIPLVADIH----F-----APS---VA------ 175 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~------~~~~A~al~~I~~~L~~~g~~iPLVADIH----F-----~~~---~A------ 175 (706)
..+.+..++++|-+-|=+... ..-....++++++.+.+.|+.+..+.-.| | ++. .+
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 94 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKL 94 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHH
Confidence 344555666777776666421 11123457778888888888876654222 2 211 11
Q ss_pred --HHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec-CCCCCchhHHHhh
Q 005248 176 --LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYY 251 (706)
Q Consensus 176 --l~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv-N~GSL~~~il~ry 251 (706)
..|... +..|++.||..+... .+.+..+++.+.++++.+.|+++|+ ||++ |++--.
T Consensus 95 ~i~~a~~lGa~~i~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE~~~~~~------- 154 (275)
T PRK09856 95 AMDMAKEMNAGYTLISAAHAGYLT-----------PPNVIWGRLAENLSELCEYAENIGM--DLILEPLTPYE------- 154 (275)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCCCCc-------
Confidence 133333 889999999754311 1345567788889999999999986 5565 233111
Q ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCC
Q 005248 252 GDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (706)
Q Consensus 252 gdt~eamVeSAle~~~i~e~~~f~~iviS~KaSn 285 (706)
...+.+.-+.++++++.+-.++.+-+-..+
T Consensus 155 ----~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h 184 (275)
T PRK09856 155 ----SNVVCNANDVLHALALVPSPRLFSMVDICA 184 (275)
T ss_pred ----ccccCCHHHHHHHHHHcCCCcceeEEeecc
Confidence 122344566777888877666666665555
No 92
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.56 E-value=2.7 Score=43.82 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=44.4
Q ss_pred CceEEEeccC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 102 HPIRVQTMTT-NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 102 ~PI~VQSMt~-t~T~Dv~atv~Qi~~L~~aGceiVRvtv--~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
..|.+ |=.+ ..|-+.+...+.+.++.+.|||||++++ .+.+++..+-....++.+.+.+.|+||
T Consensus 136 ~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~ 202 (253)
T PRK02412 136 VKVVL-SYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLIT 202 (253)
T ss_pred CEEEE-eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 33444 4433 3455555677888999999999999997 467777777666666655556788864
No 93
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.40 E-value=8.5 Score=41.75 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 005248 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI--NPGN 191 (706)
+...+++..|.++|+++|=|.+ .+....+.+++||+. +-++|+++.-=.++..|..++++ +|-|.+ -||.
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~----~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK----YPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH----CCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 4467889999999999988865 234456667777774 22499998544888999999997 999997 4665
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
....... ...- .-.-..+..+.+.|+++++||
T Consensus 169 ~~~t~~~-~g~g----------~p~~~~i~~v~~~~~~~~vpV 200 (325)
T cd00381 169 ICTTRIV-TGVG----------VPQATAVADVAAAARDYGVPV 200 (325)
T ss_pred Cccccee-CCCC----------CCHHHHHHHHHHHHhhcCCcE
Confidence 4321100 0000 000124456777788888887
No 94
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=87.31 E-value=12 Score=37.75 Aligned_cols=108 Identities=11% Similarity=0.132 Sum_probs=71.3
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee--ccCCC-------
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA--DIHFA------- 171 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA--DIHF~------- 171 (706)
+--|+-|.-..-+.+|-....+-.+++.++|...+.+ ++. +.++.|++. .++|+++ =-||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~~---~~~~~i~~~-----~~iPil~~~~~~~~~~~~~ig 79 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NGV---EDIRAIRAR-----VDLPIIGLIKRDYPDSEVYIT 79 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CCH---HHHHHHHHh-----CCCCEEEEEecCCCCCCceeC
Confidence 4456778888888899998999999999999998774 444 566777763 6789985 12332
Q ss_pred --HHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC-CeEEEec
Q 005248 172 --PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGT 238 (706)
Q Consensus 172 --~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~-~~IRIGv 238 (706)
...+..|+++ ++-|=++-.+...+. .+...++++.+++++ +++-.++
T Consensus 80 ~~~~~~~~a~~aGad~I~~~~~~~~~p~--------------------~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 80 PTIEEVDALAAAGADIIALDATDRPRPD--------------------GETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCCCC--------------------CcCHHHHHHHHHHHhCCeEEEEC
Confidence 1244566665 776666533332111 114567899999998 6665544
No 95
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.28 E-value=21 Score=38.99 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=115.4
Q ss_pred eEEEceeecCCCCceEEEeccCCC--CCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTND--TKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADA 147 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~--T~D---v~atv~Qi~~L~~aGceiVRvt-----------------v~~~~~A~a 147 (706)
+++||++.+ -|-|+.-.|++.. +.| .+..++=-.+.++-|+-+| ++ .-+.+....
T Consensus 6 P~~ig~~~l--kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlI-i~~~~~v~~~~~~~~~~~~~~~d~~i~~ 82 (337)
T PRK13523 6 PYTIKDVTL--KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLV-IVEATAVLPEGRISDKDLGIWDDEHIEG 82 (337)
T ss_pred CeeECCEee--ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEE-EECCeEECccccCCCCceecCCHHHHHH
Confidence 577777777 7889999997532 223 5677777888888888887 22 236677889
Q ss_pred HHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHH
Q 005248 148 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKC 227 (706)
Q Consensus 148 l~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~a 227 (706)
++++.+..++.|.. +++=++-..+.+. .+..-+-|-.+..........+.| .+|++.|.+.|..-.+.|
T Consensus 83 ~r~l~d~vh~~G~~--i~~QL~H~G~~~~-----~~~~~~~ps~~~~~~~~~~p~~mt----~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 83 LHKLVTFIHDHGAK--AAIQLAHAGRKAE-----LEGDIVAPSAIPFDEKSKTPVEMT----KEQIKETVLAFKQAAVRA 151 (337)
T ss_pred HHHHHHHHHhcCCE--EEEEccCCCCCCC-----CCCCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHH
Confidence 99999998887754 4555422222221 011112333332211111122333 467888999999999999
Q ss_pred HHcCCe-EEEecCCCCCchhHH--------HhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh-----HHHHHH
Q 005248 228 KKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQAY 293 (706)
Q Consensus 228 ke~~~~-IRIGvN~GSL~~~il--------~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~-----~~i~ay 293 (706)
++.|.- |=|=.-||-|=..++ .+||.+.+.=..=++|-++-.++.= ++.|++|-|-.. ...+-+
T Consensus 152 ~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 152 KEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred HHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCeEEEecccccCCCCCCHHHH
Confidence 998865 334445665544444 4577655544444444444333331 346778877311 123333
Q ss_pred HHHHHhhhcCCCCC
Q 005248 294 RLLVAEMYVHGWDY 307 (706)
Q Consensus 294 rlla~~~~~eg~~Y 307 (706)
..+++++++.|.||
T Consensus 230 ~~i~~~l~~~gvD~ 243 (337)
T PRK13523 230 VQYAKWMKEQGVDL 243 (337)
T ss_pred HHHHHHHHHcCCCE
Confidence 44445544455553
No 96
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=87.20 E-value=26 Score=38.19 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=110.7
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADACF 149 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiVRvt-----------------v~~~~~A~al~ 149 (706)
+++||++.+ -|-|+.-.|+.....| ++..++--.+.++.|+-+| |+ .-+.+..++++
T Consensus 4 P~~i~~~~l--kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlI-i~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 4 PLQLGHLTL--RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLI-ITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CeeeCCEEe--cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEE-EEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 467777777 6888888886555444 7788888889999888776 32 11556788999
Q ss_pred HHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH
Q 005248 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (706)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake 229 (706)
++.+..++.|. ++++=++...+.+.... -...-+-|..+..........+.| .+|++.|.+.|..-.+.|++
T Consensus 81 ~l~~~vh~~g~--~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~~~~~~~~mt----~~eI~~ii~~f~~AA~ra~~ 152 (343)
T cd04734 81 RLAEAVHAHGA--VIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPRHRAVPKAME----EEDIEEIIAAFADAARRCQA 152 (343)
T ss_pred HHHHHHHhcCC--eEEEeccCCCcCcCccc--CCCcccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 99999888775 56666555444332100 001112333322111000111222 45677888888888888888
Q ss_pred cCC-eEEEecCCCCC-----chhHHH---hhCCChHHHHHHHHHHHHHHHHC-CCCcEEEEEecCC
Q 005248 230 YGR-AVRIGTNHGSL-----SDRIMS---YYGDSPRGMVESAFEFARICRKL-DFHNFLFSMKASN 285 (706)
Q Consensus 230 ~~~-~IRIGvN~GSL-----~~~il~---rygdt~eamVeSAle~~~i~e~~-~f~~iviS~KaSn 285 (706)
.|- -|=|=.-||-| |+..-. +||...+.=..-++|-++-.++. | .++.|.+|-|-
T Consensus 153 aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~ 217 (343)
T cd04734 153 GGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIVGIRISG 217 (343)
T ss_pred cCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeEEEEeeh
Confidence 886 56666667876 433322 28866655445555555544443 4 56677787763
No 97
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=86.91 E-value=39 Score=34.57 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~---~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGN 191 (706)
.+.+....|+.++ ..|||+|=+-+.-.+ ..+.+..+-++++..-.++|+|.-+=-... -|.
T Consensus 9 ~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~e---------------GG~ 72 (228)
T TIGR01093 9 PDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISE---------------GGK 72 (228)
T ss_pred CCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhh---------------CCC
Confidence 4577778899998 899999766544331 222333333333322246899885421110 010
Q ss_pred CCcchhhccccccchHHHHHHHhhH----------------HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCCh
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHI----------------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I----------------~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ 255 (706)
+ ..++++|.+-++++ ++.+.++++.+++.++.+ |+-.|= +..||
T Consensus 73 ~----------~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kv-I~S~H~---------f~~tp 132 (228)
T TIGR01093 73 F----------PGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKI-IMSYHD---------FQKTP 132 (228)
T ss_pred C----------CCCHHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEE-EEeccC---------CCCCC
Confidence 0 01122222222221 345677888888887765 555441 12355
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchh
Q 005248 256 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 325 (706)
Q Consensus 256 eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IK 325 (706)
.. +...+.++.++++|.+=++|...+.+..+..+-.+...+. .+. .+.|+ .==+||+.|++-
T Consensus 133 ~~--~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~-~~~-~~~p~----i~~~MG~~G~~S 194 (228)
T TIGR01093 133 SW--EEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKV-DEH-ADVPL----ITMSMGDRGKIS 194 (228)
T ss_pred CH--HHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHH-Hhc-CCCCE----EEEeCCCCChhH
Confidence 21 1233567788899999999999998887665554443322 111 34453 222478888764
No 98
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=86.78 E-value=3.3 Score=42.28 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 112 NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvtv--~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
..|-+.+.-.+.+.++.+.|||+|++++ .+.++...|-.+..++.+. .++|+||
T Consensus 129 ~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~-~~~p~i~ 184 (228)
T TIGR01093 129 QKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEH-ADVPLIT 184 (228)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 4455667778899999999999999998 4677777777776665433 5678865
No 99
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.02 E-value=6.6 Score=44.28 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCc-CcceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 005248 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~-~iPLVADIHF~~~~Al~a~~~-~~kiRI--NPG 190 (706)
..|.+.+..|++||+|+|=|-+ .+..-.+.+++||++ + ++|||+=.=-++.-|..++++ +|-|++ -||
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~-----~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK-----YPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh-----CCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4588999999999999998544 345666778888885 6 488877444678999999997 998884 455
Q ss_pred C
Q 005248 191 N 191 (706)
Q Consensus 191 N 191 (706)
-
T Consensus 227 s 227 (404)
T PRK06843 227 S 227 (404)
T ss_pred c
Confidence 3
No 100
>PRK09989 hypothetical protein; Provisional
Probab=85.87 E-value=7.5 Score=39.71 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee----ccC-------CC----------HHHHHHHhh
Q 005248 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DIH-------FA----------PSVALRVAE 180 (706)
Q Consensus 122 ~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA----DIH-------F~----------~~~Al~a~~ 180 (706)
+.+.+++++|-+-|=+..+.... ..++++.|.+.|..++.+. |+- .+ .+.+++.++
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~---~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~ 95 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYS---TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYAL 95 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCC---HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHH
Confidence 56677788898888776554333 4578888888898887654 221 11 122333333
Q ss_pred -h-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE-ecCCCCCchhHHHhhCCChHH
Q 005248 181 -C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI-GTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 181 -~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI-GvN~GSL~~~il~rygdt~ea 257 (706)
. +..|++.||.+-+.. + ..+..+.+.+.++++.+.|+++|+.+.+ ++|.+- .+.-
T Consensus 96 ~lg~~~v~v~~g~~~~~~--------~---~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~-----------~~~~ 153 (258)
T PRK09989 96 ALNCEQVHVMAGVVPAGE--------D---AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGV-----------KPHY 153 (258)
T ss_pred HhCcCEEEECccCCCCCC--------C---HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCC-----------CCCC
Confidence 3 788999999763211 1 1234567788899999999999988765 233221 0111
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEec
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMKA 283 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~Ka 283 (706)
++.+.-+..+++++.+-.++.+-+=.
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~lD~ 179 (258)
T PRK09989 154 LFSSQYQALAIVEEVARDNVFIQLDT 179 (258)
T ss_pred ccCCHHHHHHHHHHcCCCCeEEEeeh
Confidence 34455566788888887777776643
No 101
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.57 E-value=24 Score=38.08 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=111.9
Q ss_pred eEEEce-eecCCCCceEEEeccCCC-CCC---HHHHHHHHHHHHHcCCCEEEEe----------cC---------CHHHH
Q 005248 90 TVMVGN-VAIGSEHPIRVQTMTTND-TKD---VAGTVEEVMRIADQGADLVRIT----------VQ---------GKREA 145 (706)
Q Consensus 90 ~V~VG~-v~IGG~~PI~VQSMt~t~-T~D---v~atv~Qi~~L~~aGceiVRvt----------v~---------~~~~A 145 (706)
+++||+ +.+ -|-|..-.|++-. +.| .+..++=..+.++.|+-+|=+. .| +.+..
T Consensus 4 P~~i~~~~~l--kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 4 PLTLPNGATL--PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CeEcCCCcEE--cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 466664 666 6889999997533 344 6788888888888888887111 12 55778
Q ss_pred HHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcch---hhc-cccccchHHHHHHHhhHHhhHH
Q 005248 146 DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR---AQF-EQLEYTDDEYQKELQHIEEVFS 221 (706)
Q Consensus 146 ~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~---k~F-~~~~YtdeeY~~El~~I~~~f~ 221 (706)
..++++.+...+.|.. +++=++.-.+.+-.. ....-+-|..+-... ..+ ...+.| .+|+++|.+.|.
T Consensus 82 ~~~~~l~~~vh~~G~~--~~~Ql~h~G~~~~~~---~~~~~~~ps~~~~~~~~~~~~~~p~~mt----~~eI~~~i~~~~ 152 (338)
T cd04733 82 EAFREWAAAAKANGAL--IWAQLNHPGRQSPAG---LNQNPVAPSVALDPGGLGKLFGKPRAMT----EEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHhcCCE--EEEEccCCCcCCCcc---CCCCCcCCCCCcCcccccccCCCCCcCC----HHHHHHHHHHHH
Confidence 8999999988888874 455544433332111 011111222111100 000 012223 477888889999
Q ss_pred HHHHHHHHcCC-eEEEecCCCCCchhHHH--------hhCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEecC
Q 005248 222 PLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKAS 284 (706)
Q Consensus 222 ~vv~~ake~~~-~IRIGvN~GSL~~~il~--------rygdt~eamVeSAle~~~i~e~-~~f~~iviS~KaS 284 (706)
.-.+.|++.|- -|=|=.-||.|-..+++ +||.+.|.=..-.+|-++-.++ .| +++.|++|.|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris 224 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLN 224 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEc
Confidence 99999999987 55555556666555544 5776666555556666654444 34 6789999998
No 102
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=85.43 E-value=1.2 Score=45.67 Aligned_cols=136 Identities=23% Similarity=0.274 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcch
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRR 196 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~ 196 (706)
--|++.+.+|+++|||||=+-.-+..--+.+.++.++.++++ .+++||| -+..=++.|.+. +|-|=-- ..|-
T Consensus 51 TPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADi-st~ee~~~A~~~G~D~I~TT--LsGY-- 123 (192)
T PF04131_consen 51 TPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADI-STLEEAINAAELGFDIIGTT--LSGY-- 123 (192)
T ss_dssp S-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE--SSHHHHHHHHHTT-SEEE-T--TTTS--
T ss_pred CCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeec-CCHHHHHHHHHcCCCEEEcc--cccC--
Confidence 357899999999999999987544432244444444444444 9999999 567777788776 7765321 2221
Q ss_pred hhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCc
Q 005248 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN 276 (706)
Q Consensus 197 k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ 276 (706)
|++.=. -.-.|. |++...+.++|+ | --|-. .+| |+++-|-++|-+.
T Consensus 124 --------T~~t~~-----~~pD~~-lv~~l~~~~~pv-I--aEGri---------~tp--------e~a~~al~~GA~a 169 (192)
T PF04131_consen 124 --------TPYTKG-----DGPDFE-LVRELVQADVPV-I--AEGRI---------HTP--------EQAAKALELGAHA 169 (192)
T ss_dssp --------STTSTT-----SSHHHH-HHHHHHHTTSEE-E--EESS-----------SH--------HHHHHHHHTT-SE
T ss_pred --------CCCCCC-----CCCCHH-HHHHHHhCCCcE-e--ecCCC---------CCH--------HHHHHHHhcCCeE
Confidence 111000 011122 333333347774 1 11111 466 3556667789999
Q ss_pred EEEEEecCChhHHHHHHH
Q 005248 277 FLFSMKASNPVVMVQAYR 294 (706)
Q Consensus 277 iviS~KaSnv~~~i~ayr 294 (706)
+||-=.-+.|+...+-|.
T Consensus 170 VVVGsAITrP~~It~~F~ 187 (192)
T PF04131_consen 170 VVVGSAITRPQEITKRFV 187 (192)
T ss_dssp EEE-HHHH-HHHHHHHHH
T ss_pred EEECcccCCHHHHHHHHH
Confidence 998777777776655443
No 103
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=85.25 E-value=58 Score=34.94 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHcC-----CCEEEEecCCHHHHHHHHHHHHhhccCCcCcc-eeeccCCCHHHHHHHhhh-cCceeeC
Q 005248 116 DVAGTVEEVMRIADQG-----ADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVAEC-FDKIRVN 188 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aG-----ceiVRvtv~~~~~A~al~~I~~~L~~~g~~iP-LVADIHF~~~~Al~a~~~-~~kiRIN 188 (706)
.++.-++=++.|.++| .+-+=+..-+.++++++..+.++ +...| +++=.==|.+=...|+++ ++.|-|-
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~----~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~ 94 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDR----GYKFPEVTGWIRANKEDLKLVKEMGLKETGIL 94 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHc----CCCCCEEEEEecCCHHHHHHHHHcCcCEEEEE
Confidence 7788888999999999 77666766677888888888763 33212 222111122223344454 6665541
Q ss_pred -CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCCh-HHHHHHHHHHH
Q 005248 189 -PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP-RGMVESAFEFA 266 (706)
Q Consensus 189 -PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~-eamVeSAle~~ 266 (706)
|-+=. |. ...+..-.+.+-+++.++|+.||++|..+|+++-..|=+ .+ ...++=+.+.+
T Consensus 95 ~s~S~~-----~~-----~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~---------d~~~~v~~~~~~~~ 155 (279)
T cd07947 95 MSVSDY-----HI-----FKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRA---------DIYGFVLPFVNKLM 155 (279)
T ss_pred EcCCHH-----HH-----HHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCC---------CcccchHHHHHHHH
Confidence 11100 11 111233456677788899999999999999998111100 11 33445566677
Q ss_pred HHHHHCCCCcEEEEEecC
Q 005248 267 RICRKLDFHNFLFSMKAS 284 (706)
Q Consensus 267 ~i~e~~~f~~iviS~KaS 284 (706)
+.+++.|-+ +.|+++-|
T Consensus 156 ~~~~~~G~~-~~i~l~DT 172 (279)
T cd07947 156 KLSKESGIP-VKIRLCDT 172 (279)
T ss_pred HHHHHCCCC-EEEEeccC
Confidence 777788865 35666644
No 104
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.06 E-value=5.5 Score=45.90 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHH---HHHHHHHHhhccCCcC-cceee-ccCCCHHHHHHHhhh-cCceeeC--CC
Q 005248 119 GTVEEVMRIADQGADLVRITVQGKREA---DACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIRVN--PG 190 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~~~A---~al~~I~~~L~~~g~~-iPLVA-DIHF~~~~Al~a~~~-~~kiRIN--PG 190 (706)
...+.+.+|.+||+|+|=|-+.+-... +.+++||+. ++ ++||+ |+ -++.-|..|+++ +|-|++- ||
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~-----~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKT-----YPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSG 321 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHh-----CCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCC
Confidence 346899999999999999987664433 467777774 54 89875 88 568889999997 9999874 77
Q ss_pred CCCc
Q 005248 191 NFAD 194 (706)
Q Consensus 191 Nig~ 194 (706)
-+..
T Consensus 322 ~~~~ 325 (505)
T PLN02274 322 SICT 325 (505)
T ss_pred cccc
Confidence 5544
No 105
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.91 E-value=21 Score=33.98 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCH---------HHHHHHhhh-cCce
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP---------SVALRVAEC-FDKI 185 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~---------~~Al~a~~~-~~ki 185 (706)
|.++..+.+..+.++|++-+.+.- +.++.+++... +.++|+++=+=.+- ..|..|.+. +|.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999887774 55666666432 22689887664432 344456665 7777
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHH
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~ 265 (706)
=+-| |++.... ...+.+.+.|+.+.+.| +.++|+-|-.+-+.. .+++ .-.+.
T Consensus 83 ~v~~-~~~~~~~-------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~---------~~~~----~~~~~ 134 (201)
T cd00945 83 DVVI-NIGSLKE-------------GDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL---------KTAD----EIAKA 134 (201)
T ss_pred EEec-cHHHHhC-------------CCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC---------CCHH----HHHHH
Confidence 6644 2221100 00245566777788877 789999998875543 1232 23345
Q ss_pred HHHHHHCCCCcEEEEE
Q 005248 266 ARICRKLDFHNFLFSM 281 (706)
Q Consensus 266 ~~i~e~~~f~~iviS~ 281 (706)
++++++.|++=|+.|.
T Consensus 135 ~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 135 ARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHhCCCEEEeCC
Confidence 6777888998887765
No 106
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=84.42 E-value=18 Score=38.28 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHHHHH-HHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCc
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRIT-------VQGKREADAC-FEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDK 184 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvt-------v~~~~~A~al-~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~k 184 (706)
.-.++.-++=++.|.++|.+.+-+. +|.+.+++.+ ..|.+ + .+..+-..+ -+.+=...|+++ ++.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~-~--~~~~~~~~~---~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR-R--PGVRYSALV---PNLRGAERALAAGVDE 89 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc-C--CCCEEEEEC---CCHHHHHHHHHcCcCE
Confidence 3456777888889999999999998 7766665532 22222 1 233332222 244445566665 777
Q ss_pred eeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC--CCCCchhHHHhhCCChHHHHHH
Q 005248 185 IRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 185 iRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN--~GSL~~~il~rygdt~eamVeS 261 (706)
|+|= |-+=....+.+ ..-.+...++..+.++.||++|.-+++.+- .|.- + .+.++ .+-
T Consensus 90 i~i~~~~Sd~~~~~~~----------~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~-~-----~~~~~---~~~ 150 (274)
T cd07938 90 VAVFVSASETFSQKNI----------NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP-Y-----EGEVP---PER 150 (274)
T ss_pred EEEEEecCHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC-C-----CCCCC---HHH
Confidence 7742 33211111111 111344556777799999999999886653 2221 0 11222 345
Q ss_pred HHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 262 AFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 262 Ale~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
.++.++.+++.|.+. |+++-| .|..+-+-.+.|.++
T Consensus 151 ~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 151 VAEVAERLLDLGCDE--ISLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHHcCCCE--EEECCCCCccCHHHHHHHHHHHHHH
Confidence 566777788889875 455543 344444444444443
No 107
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=84.05 E-value=53 Score=35.26 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHHHHHhhhcCce
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKI 185 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~--------~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~~~ki 185 (706)
+.+..++++.++.++|.+.+.+-+-. .++.+.+..||+. -|-+++|..|.+ |+..-|++.++.+++.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDANGRWDLAEAIRLARALEEY 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 68889999999999999999998742 4577888888875 356799999997 5566666666666654
No 108
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.28 E-value=37 Score=37.70 Aligned_cols=212 Identities=15% Similarity=0.190 Sum_probs=122.9
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe---c--------------CCHHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT---V--------------QGKREADACF 149 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiVRvt---v--------------~~~~~A~al~ 149 (706)
+++||++.+ -|-|+.-.|++....| ++..++=-.+.++.|+-+|=+- | -+.+..+.++
T Consensus 4 Pl~ig~~~l--kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 4 PFTLKGLTL--PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CeeECCEEe--eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 467777776 6778888886554444 5666777777887776665110 1 1456788899
Q ss_pred HHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCce-eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHH
Q 005248 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (706)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ki-RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ak 228 (706)
+|.+.+.+.|.. +++=++...+.+........+. -+.|.++-.....+ ..+.| .+|++.|.+.|..-.+.|+
T Consensus 82 ~l~d~vh~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~-p~~mt----~~eI~~ii~~f~~AA~~a~ 154 (361)
T cd04747 82 KVVDEVHAAGGK--IAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPV-GREMT----EADIDDVIAAFARAAADAR 154 (361)
T ss_pred HHHHHHHhcCCE--EEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCC-CccCC----HHHHHHHHHHHHHHHHHHH
Confidence 999988888864 5555543344332110000011 14555543211100 12233 4577888888988888898
Q ss_pred HcCCe-EEEecCCCCCchhHH--------HhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCCh--h-------HHH
Q 005248 229 KYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP--V-------VMV 290 (706)
Q Consensus 229 e~~~~-IRIGvN~GSL~~~il--------~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv--~-------~~i 290 (706)
+.|-- |=|=.-||-|=..+| .+||.+.|.=..=++|-++-.++.==.|+.|.+|-|-- . .+.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~ 234 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTP 234 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCH
Confidence 88754 445556775544444 45887666555556666665555422567888888820 0 112
Q ss_pred HHHHHHHHhhhcCCCCCcccc
Q 005248 291 QAYRLLVAEMYVHGWDYPLHL 311 (706)
Q Consensus 291 ~ayrlla~~~~~eg~~YPLHL 311 (706)
+-...+++.+++.|.|| +|+
T Consensus 235 ~e~~~~~~~l~~~gvd~-i~v 254 (361)
T cd04747 235 DELEALLAPLVDAGVDI-FHC 254 (361)
T ss_pred HHHHHHHHHHHHcCCCE-EEe
Confidence 22234455556667788 776
No 109
>PRK09389 (R)-citramalate synthase; Provisional
Probab=83.16 E-value=81 Score=36.44 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee-CC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI-NP 189 (706)
..+++.-++=+..|.++|.+.+=+..| +..+.+.++.|.+. +.+..+++-..-..+-...|+++ ++.|+| .|
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~----~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~ 95 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE----GLNAEICSFARAVKVDIDAALECDVDSVHLVVP 95 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc----CCCcEEEeecccCHHHHHHHHhCCcCEEEEEEc
Confidence 456777888888999999999999876 77888899888863 44556666544444444455565 666664 23
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
-+=-..+. -+..-.+.+-+.+.+.|+.||++|..++++.-.++- .++ +-+++.++.+
T Consensus 96 ~Sd~h~~~----------~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r---------~~~----~~l~~~~~~~ 152 (488)
T PRK09389 96 TSDLHIEY----------KLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASR---------ADL----DFLKELYKAG 152 (488)
T ss_pred cCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCC---------CCH----HHHHHHHHHH
Confidence 22111111 122223444556677899999999988886532221 122 3344555556
Q ss_pred HHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 270 RKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 270 e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
.+.|-+. |.+..+ .|..+-+-.+.|.++
T Consensus 153 ~~~Ga~~--i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 153 IEAGADR--ICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred HhCCCCE--EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 6677776 444544 455554444444443
No 110
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=82.68 E-value=34 Score=37.35 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 005248 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRIN----PGNig~ 194 (706)
..++..|+++|+|+|=-| ++++ +.+-+..+|+ .+++|+|||+-= ..=|+.+++. ++=||-- -||+..
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP-ade~~~~~K~-----~f~vpfmad~~~-l~EAlrai~~GadmI~Tt~e~gTg~v~~ 151 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP-ADWTFHIDKK-----KFKVPFVCGARD-LGEALRRINEGAAMIRTKGEAGTGNIVE 151 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc-HHHHHHHHHH-----HcCCCEEccCCC-HHHHHHHHHCCCCEEeccccCCCccHHH
Confidence 889999999999999433 2233 4555666666 479999999964 4455566654 8888854 234211
Q ss_pred chhhccccccchHHHHHHHhhH----------------HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHH
Q 005248 195 RRAQFEQLEYTDDEYQKELQHI----------------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I----------------~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eam 258 (706)
--+. -. -|..|..++ +--+.-|-+.++..++|+= -.--|-+ .||
T Consensus 152 av~h--lr-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV-~fAiGGI---------~TP--- 211 (287)
T TIGR00343 152 AVRH--MR-----KINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVV-NFAAGGV---------ATP--- 211 (287)
T ss_pred HHHH--HH-----HHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEE-EeccCCC---------CCH---
Confidence 1000 00 122222222 2233333333333455651 0011212 244
Q ss_pred HHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHhhhcCCCCCcccc
Q 005248 259 VESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (706)
Q Consensus 259 VeSAle~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla~~~~~eg~~YPLHL 311 (706)
+.+..+-++|.+-+.+. +|+.|+....+++...... |+-|--|
T Consensus 212 -----edAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~~~ 257 (287)
T TIGR00343 212 -----ADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNPEKL 257 (287)
T ss_pred -----HHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCHHHH
Confidence 34555667888888776 6889999999998887776 6656433
No 111
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=82.59 E-value=9 Score=40.54 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCc
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFAD 194 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~ 194 (706)
+...+-.+.|++.|.+.+===++ ..+-+.++++++ .+++|+.+|=+. ++.-+...++ .++-+.+.|..+|.
T Consensus 191 ~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~-----~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GG 264 (316)
T cd03319 191 EEAVELLRELAELGVELIEQPVP-AGDDDGLAYLRD-----KSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHHHHHHHHhcCCCEEECCCC-CCCHHHHHHHHh-----cCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCC
Confidence 33444445555555544421122 123445556655 478999999775 4555556666 59999999999988
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
-. +..++...|+++|+++=+|
T Consensus 265 i~----------------------~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 265 LT----------------------EALRIADLARAAGLKVMVG 285 (316)
T ss_pred HH----------------------HHHHHHHHHHHcCCCEEEE
Confidence 43 6788999999999999777
No 112
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.32 E-value=60 Score=35.03 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=108.5
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------E-----EecCCHHHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------R-----ITVQGKREADACFE 150 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiV-----------R-----vtv~~~~~A~al~~ 150 (706)
++++|++.+ -|-|..-.|++....| .+..++=-.+.++-|+-+| | +..-+.+....+++
T Consensus 4 P~~ig~~~l--~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 4 PLTLRGVTL--KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CeeECCEEE--eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 467777777 6788888887655445 6777777888888888887 1 12335678899999
Q ss_pred HHHhhccCCcCcceeeccCCCHHHHHHHhhh-----------cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhh
Q 005248 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAEC-----------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (706)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-----------~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~ 219 (706)
+.+..++.|.. +++=++...+.+...... ....-+-|..+..........+.| .+|+++|.+.
T Consensus 82 l~~~vh~~G~~--~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt----~~eI~~ii~~ 155 (336)
T cd02932 82 IVDFIHSQGAK--IGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELT----REEIAEVVDA 155 (336)
T ss_pred HHHHHHhcCCc--EEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHH
Confidence 99998888875 455543333332111000 000012222221110000112334 5677888888
Q ss_pred HHHHHHHHHHcCCe-EEEecCCCCCchhHH--------HhhCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEecC
Q 005248 220 FSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKAS 284 (706)
Q Consensus 220 f~~vv~~ake~~~~-IRIGvN~GSL~~~il--------~rygdt~eamVeSAle~~~i~e~-~~f~~iviS~KaS 284 (706)
|..-.+.|++.|.- |=|=.-||-|-..++ .+||.+.+.=.+-.+|-++-.++ .| .|+.|++|-|
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v~vri~ 229 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEEc
Confidence 98888888888754 444445565433333 34675544444444555554443 33 5678999977
No 113
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.24 E-value=73 Score=33.83 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------HHHHH--H---------HHHHHHhhccCCcCcceeeccCCCH---
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG---------KREAD--A---------CFEIKNSLVQKNYNIPLVADIHFAP--- 172 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~---------~~~A~--a---------l~~I~~~L~~~g~~iPLVADIHF~~--- 172 (706)
|.+.|.+-+..|.+.|+|++=+-+|- .++|. | +=++-++++++..++|+|.-.-||+
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 78999999999999999999999987 33331 1 1233334666678999999988886
Q ss_pred ----HHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 173 ----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 173 ----~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
+...+|.++ ++.+=|+ .- . | |...+++++|+++|+..=.-+.--+-++|
T Consensus 104 ~G~e~f~~~~~~aGvdGviip-DL----p--~------------------ee~~~~~~~~~~~gl~~I~lvap~t~~er 157 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIP-DL----P--P------------------EEAEELRAAAKKHGLDLIFLVAPTTTDER 157 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEEC-CC----C--H------------------HHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 344567776 8888884 21 1 1 24567899999999766444433333333
No 114
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=81.39 E-value=15 Score=41.41 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHH----------cCCCEEEE--ecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhc
Q 005248 117 VAGTVEEVMRIAD----------QGADLVRI--TVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF 182 (706)
Q Consensus 117 v~atv~Qi~~L~~----------aGceiVRv--tv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~ 182 (706)
+++-++.++.+.. .|.|+|-| +..| .+.|+.++++.+ .+++|||=--- |+.++.+|++.+
T Consensus 45 ~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DPae~fa~~vk~V~~-----a~~~PLIL~~~-D~evl~aale~~ 118 (386)
T PF03599_consen 45 IEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDPAEEFAKAVKKVAE-----AVDVPLILCGC-DPEVLKAALEAC 118 (386)
T ss_dssp HHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGSTHHHHHHHHHHHHH-----C-SSEEEEESS-HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCChHHHHHHHHHHHHH-----hcCCCEEEEeC-CHHHHHHHHHHh
Confidence 5577777776543 47787655 4555 455666666665 48899875332 999999999986
Q ss_pred Ccee--eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 183 DKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 183 ~kiR--INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
..=| |.+=| +++++++.+.|++||.|+ ++ +++.+ ++
T Consensus 119 ~~~kpLL~aAt-------------------------~eNyk~m~~lA~~y~~pl--~v-~sp~D--------------ln 156 (386)
T PF03599_consen 119 AGKKPLLYAAT-------------------------EENYKAMAALAKEYGHPL--IV-SSPID--------------LN 156 (386)
T ss_dssp TTS--EEEEEB-------------------------TTTHHHHHHHHHHCT-EE--EE-E-SSC--------------HH
T ss_pred CcCCcEEeEcC-------------------------HHHHHHHHHHHHHcCCeE--EE-Eeccc--------------HH
Confidence 5433 33222 225677999999999997 66 33332 23
Q ss_pred HHHHHHHHHHHCCCCcEEEEEecCC----hh----HHHHHHHHHHHhhhcCCCCCccccccccc
Q 005248 261 SAFEFARICRKLDFHNFLFSMKASN----PV----VMVQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (706)
Q Consensus 261 SAle~~~i~e~~~f~~iviS~KaSn----v~----~~i~ayrlla~~~~~eg~~YPLHLGVTEA 316 (706)
.+-+-.+.+.++|++|||+--=+.. .. .|++ -|+.|=+- .+..-||.=-..+||
T Consensus 157 ~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyGie~t~s~~~r-IRraALk~-Dr~lgyPiI~~~~~a 218 (386)
T PF03599_consen 157 LLKQLNIKLTELGVKDIVLDPGTRALGYGIEYTYSNMER-IRRAALKG-DRPLGYPIITFPTEA 218 (386)
T ss_dssp HHHHHHHHHHTTT-GGEEEE---SSTTTTHHHHHHHHHH-HHHHHHHT--GGG-S-BEECHHHC
T ss_pred HHHHHHHHHHhcCcccEEecCCcccchhHHHHHHHHHHH-HHHHHhcc-CcccCCceeecchhc
Confidence 4556778899999999999765544 32 2333 23333221 334569974333444
No 115
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=81.35 E-value=6.4 Score=42.25 Aligned_cols=136 Identities=20% Similarity=0.328 Sum_probs=83.2
Q ss_pred eeecCCCCce-EEEeccCCCCCC-HHHHHHHHHHH-HHcCCCEEEEe------------c--CC-HHHHHHHHHHHHhhc
Q 005248 95 NVAIGSEHPI-RVQTMTTNDTKD-VAGTVEEVMRI-ADQGADLVRIT------------V--QG-KREADACFEIKNSLV 156 (706)
Q Consensus 95 ~v~IGG~~PI-~VQSMt~t~T~D-v~atv~Qi~~L-~~aGceiVRvt------------v--~~-~~~A~al~~I~~~L~ 156 (706)
++.|||+.|+ .|==-+...+.+ +..+.+.++++ ++.|-..++=+ . ++ .+--+-|.+++++
T Consensus 2 ~~~ig~~~~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~-- 79 (264)
T PRK05198 2 DIEVGNDLPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKET-- 79 (264)
T ss_pred CeeeCCCCceEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHH--
Confidence 5778888655 333334444433 23333333332 12444455441 1 24 5677888889886
Q ss_pred cCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 157 ~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
+.+|+|.|+|-. +-+..+++++|=+-|--=|.-. .+|++++.+.|+||=+
T Consensus 80 ---~GlpvvTeV~~~-~~~~~v~~~~DilQIgArn~rn--------------------------~~LL~a~g~t~kpV~l 129 (264)
T PRK05198 80 ---FGVPVLTDVHEP-EQAAPVAEVVDVLQIPAFLCRQ--------------------------TDLLVAAAKTGKVVNI 129 (264)
T ss_pred ---HCCceEEEeCCH-HHHHHHHhhCcEEEECchhcch--------------------------HHHHHHHhccCCeEEe
Confidence 889999999975 4455667889999997666621 2588888888999822
Q ss_pred ecCCCCCchhHHHhhC--CChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 237 GTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 237 GvN~GSL~~~il~ryg--dt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
+| | -||+.|.-+| +.+...|=+||++
T Consensus 130 ------------Kr-G~~~t~~e~~~aa----eyi~~~Gn~~vil 157 (264)
T PRK05198 130 ------------KK-GQFLAPWDMKNVV----DKVREAGNDKIIL 157 (264)
T ss_pred ------------cC-CCcCCHHHHHHHH----HHHHHcCCCeEEE
Confidence 22 4 5787666544 3344556566554
No 116
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=81.26 E-value=6.3 Score=41.10 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=51.4
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiV--Rvtv~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
-.+.|+++.||++.|..+=|.+-++. +....|+.++...|||+| |+-.=+..+.+.+.++-+.|++ .+.|++.
T Consensus 7 ~~~~v~~~~~g~~~p~Icvpi~~~~~---ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~--~~~p~I~ 81 (229)
T PRK01261 7 DKISIGKFVIGNMQPIVVESIFFKDI---KEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNE--MDIDYIF 81 (229)
T ss_pred CeEEEeCeEeCCCCcEEEEEeCCCCH---HHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhh--cCCCEEE
Confidence 35789999999999999999887654 555667778888999995 5543332333334444444433 3789887
Q ss_pred ccC
Q 005248 167 DIH 169 (706)
Q Consensus 167 DIH 169 (706)
=+-
T Consensus 82 T~R 84 (229)
T PRK01261 82 TYR 84 (229)
T ss_pred EEc
Confidence 543
No 117
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=80.62 E-value=42 Score=31.86 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=58.4
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--------HHHHHHHHHHHhhccCCcCcceeeccC---
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK--------READACFEIKNSLVQKNYNIPLVADIH--- 169 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~--------~~A~al~~I~~~L~~~g~~iPLVADIH--- 169 (706)
.-||.++-..++....++.+++++++..++|++.+=+..|-- .-.+-++.|.+.. +.++|++....
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~pv~iy~~p~~ 124 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA---DGGLPLKVILETRG 124 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh---cCCceEEEEEECCC
Confidence 567777777666556789999999999999999998876642 2233444555531 24789887542
Q ss_pred C-CHHHHHH----Hhh-hcCceeeCCCCC
Q 005248 170 F-APSVALR----VAE-CFDKIRVNPGNF 192 (706)
Q Consensus 170 F-~~~~Al~----a~~-~~~kiRINPGNi 192 (706)
+ .+....+ +.+ .++-|-..+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~iK~~~~~~ 153 (201)
T cd00945 125 LKTADEIAKAARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 3 4433332 223 377787777744
No 118
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.51 E-value=48 Score=36.13 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=105.2
Q ss_pred eEEEceeecCCCCceEEEeccCCCCC-C--HHHHHHHHHHHHHcCCCEEEE----------------ecCCHHHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTK-D--VAGTVEEVMRIADQGADLVRI----------------TVQGKREADACFE 150 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~-D--v~atv~Qi~~L~~aGceiVRv----------------tv~~~~~A~al~~ 150 (706)
+++||++.+ -|-|+.-.|++.-.. + .+..++=-.+.++-|+-+|=. ..-+.+..+.+++
T Consensus 4 P~~ig~~~l--kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 4 PLDLGFTTL--RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CeeECCEEE--ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 467777776 677888888632111 1 466677777778777777611 1225677888888
Q ss_pred HHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc
Q 005248 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (706)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~ 230 (706)
+.+...+.|. .+++=++...+.+.. +.=+-|.++............|+ +|++.|.+.|..-.+.|++.
T Consensus 82 l~~~vh~~g~--~~~~QL~h~G~~~~~------~~~~~ps~~~~~~~~~~p~~mt~----~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 82 ITDAVHAEGG--KIALQILHAGRYAYH------PLCVAPSAIRAPINPFTPRELSE----EEIEQTIEDFARCAALAREA 149 (353)
T ss_pred HHHHHHHcCC--EEEeeccCCCCCCCC------CCCcCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHc
Confidence 8888888766 355554433332110 01123333322111111223333 67778888888888899988
Q ss_pred CC-eEEEecCCCCCchhHHH--------hhCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEecCC
Q 005248 231 GR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKASN 285 (706)
Q Consensus 231 ~~-~IRIGvN~GSL~~~il~--------rygdt~eamVeSAle~~~i~e~-~~f~~iviS~KaSn 285 (706)
|- .|=|-.-||-|=..+|+ +||.+.+.=..-.+|-++-.++ .| .++.|.+|-|-
T Consensus 150 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG-~d~~v~iRi~~ 213 (353)
T cd02930 150 GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG-EDFIIIYRLSM 213 (353)
T ss_pred CCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEecc
Confidence 86 66676666755444443 4776555444445555554444 33 46677777763
No 119
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.50 E-value=44 Score=33.00 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHhhccCCcCcceeecc-CCC--HHHHHHHhhh-cCceeeCCCCCC
Q 005248 123 EVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADI-HFA--PSVALRVAEC-FDKIRVNPGNFA 193 (706)
Q Consensus 123 Qi~~L~~aGceiVRvtv~~~~--~A~al~~I~~~L~~~g~~iPLVADI-HF~--~~~Al~a~~~-~~kiRINPGNig 193 (706)
|+.++.++|+++|=+-.-... -.+.+..+++ +.+|+++++ ... ...+..+.+. ++-|-++||--+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~------~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~ 138 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK------HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDE 138 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH------cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCc
Confidence 888999999998865544321 2344445554 568898885 432 3666677774 888899997544
No 120
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=80.22 E-value=30 Score=38.92 Aligned_cols=137 Identities=11% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceee
Q 005248 115 KDVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV 187 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~a---GceiVRvt----v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRI 187 (706)
..+++-+++|+.+.+. +..+-.|. +|+.-..+.+.+|.+.|++. .|+..|.++ .+..
T Consensus 81 ~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~e~-------------tie~ 144 (453)
T PRK09249 81 PYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREH---FNFAPDAEI-------------SIEI 144 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHh---CCCCCCCEE-------------EEEe
Confidence 4678888888877653 33333332 45544455566666554432 233222221 3568
Q ss_pred CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHH
Q 005248 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (706)
Q Consensus 188 NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~ 267 (706)
||.++-. +.++..++.|+. ||-+.-=|+++++++.+|-. .-.+.+++-++
T Consensus 145 np~~lt~---------------------------e~l~~l~~aG~~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~ 194 (453)
T PRK09249 145 DPRELDL---------------------------EMLDALRELGFN-RLSLGVQDFDPEVQKAVNRI--QPFEFTFALVE 194 (453)
T ss_pred cCCcCCH---------------------------HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCC--CCHHHHHHHHH
Confidence 9999832 356777777853 65555567789999998732 12345667788
Q ss_pred HHHHCCCCcEEEEEecC----ChhHHHHHHHHHH
Q 005248 268 ICRKLDFHNFLFSMKAS----NPVVMVQAYRLLV 297 (706)
Q Consensus 268 i~e~~~f~~iviS~KaS----nv~~~i~ayrlla 297 (706)
.+.+.||.++.+.+=.- +...+.+..+.+.
T Consensus 195 ~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 195 AARELGFTSINIDLIYGLPKQTPESFARTLEKVL 228 (453)
T ss_pred HHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH
Confidence 88999998777766544 4444444444443
No 121
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=80.20 E-value=12 Score=41.70 Aligned_cols=92 Identities=18% Similarity=0.360 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhh-cCcee--eCCCCC
Q 005248 120 TVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIR--VNPGNF 192 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~-~~kiR--INPGNi 192 (706)
..+.+..|.+||+|++=|-+ .+....+.+++||+. ++ +|+||====++..|+.-+++ +|.|| |-||-+
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~-----~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsi 183 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK-----FPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSI 183 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH-----STTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTT
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh-----CCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcc
Confidence 47788889999999998854 455666777777775 54 99999877778888877777 99888 568876
Q ss_pred Cc-------chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 193 AD-------RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 193 g~-------~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
=- +..++ ..+.++.+.|+++++||
T Consensus 184 CtTr~v~GvG~PQ~------------------tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 184 CTTREVTGVGVPQL------------------TAVYECAEAARDYGVPI 214 (352)
T ss_dssp BHHHHHHSBSCTHH------------------HHHHHHHHHHHCTTSEE
T ss_pred cccccccccCCcHH------------------HHHHHHHHHhhhccCce
Confidence 32 11111 15566778888898888
No 122
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=80.19 E-value=6.3 Score=39.80 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=45.4
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceee
Q 005248 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
++..|.+-.-.-..|-+.+...+.+.++.+.|||+|++++. +.++..+|-++.+++++. .+.|+|+
T Consensus 112 ~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~-~~~p~i~ 179 (224)
T PF01487_consen 112 GGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREE-PDIPVIA 179 (224)
T ss_dssp TTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHH-TSSEEEE
T ss_pred CCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhc-cCCcEEE
Confidence 34444444333344556666888899999999999999754 688888888888887766 6788876
No 123
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=80.03 E-value=87 Score=36.49 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc-Ccceee-------ccCCCHHHHHHHh-hh-
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAPSVALRVA-EC- 181 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~-~iPLVA-------DIHF~~~~Al~a~-~~- 181 (706)
..+++.-++=+..|.++|.+.+=+..| +..+.+.++.|.+. +. +..+++ |+.......++++ ++
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~----~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g 98 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL----KLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAG 98 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh----CCCCcEEEEEeeccccCCCcccHHHHHHHHhCC
Confidence 456788888888999999999999665 56677888888762 21 233333 5543333344433 44
Q ss_pred cCceeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 182 FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 182 ~~kiRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
++-|+|- |-+=-..++. +..-.+.+-+++.+.|+.||++|..++.+.-|-+-. |-.++ +
T Consensus 99 ~~~i~i~~~~Sd~h~~~~----------l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da------~r~d~----~ 158 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEA----------LRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG------YKANP----E 158 (524)
T ss_pred CCEEEEEECCCHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc------ccCCH----H
Confidence 6667753 3211010111 111234456678889999999999988766421100 00122 3
Q ss_pred HHHHHHHHHHHCCCCcEEEEEec----CChhHHHHHHHHHHHh
Q 005248 261 SAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYRLLVAE 299 (706)
Q Consensus 261 SAle~~~i~e~~~f~~iviS~Ka----Snv~~~i~ayrlla~~ 299 (706)
-+++.++.+.+.|-+.|. ++- ..|..+-+-.+.|.+.
T Consensus 159 ~l~~~~~~~~~~Gad~i~--l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 159 YALATLKAAAEAGADWVV--LCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred HHHHHHHHHHhCCCCeEE--EccCCCCcCHHHHHHHHHHHHHh
Confidence 344555556677777544 443 3344444444444444
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.95 E-value=3.3 Score=47.35 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCEEEE--------ecC-----CHHHHHHHHHHHHhhccCCcCcceeecc--CCCHHHHHHHhhh-c
Q 005248 119 GTVEEVMRIADQGADLVRI--------TVQ-----GKREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC-F 182 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRv--------tv~-----~~~~A~al~~I~~~L~~~g~~iPLVADI--HF~~~~Al~a~~~-~ 182 (706)
+|.++.+.|.+||+|.||| |+. +.-...++.++.+..+ .+.+|+|||- |+...++ +|+.+ +
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~--~~~~~via~ggi~~~~~~~-~al~~ga 353 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAR--ELGAHVWADGGVRHPRDVA-LALAAGA 353 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHH--hcCCcEEecCCCCCHHHHH-HHHHcCC
Confidence 4677888899999999992 222 2245666666666433 3679999994 4444443 33333 5
Q ss_pred Ccee
Q 005248 183 DKIR 186 (706)
Q Consensus 183 ~kiR 186 (706)
+.+=
T Consensus 354 ~~v~ 357 (479)
T PRK07807 354 SNVM 357 (479)
T ss_pred Ceee
Confidence 5553
No 125
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=79.61 E-value=6.3 Score=46.16 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=55.3
Q ss_pred CCChhhHhHHHHHHHHHhhcccCCc------eEeccCCCCc---ccccHHHHHHHHHHHh------CCCC-CCeEEEEcc
Q 005248 616 GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCPSCGR---TLFDLQEISAEIREKT------SHLP-GVSIAIMGC 679 (706)
Q Consensus 616 ~~p~~ev~~~a~~ILqa~rlR~~kt------e~ISCPsCGR---TlfDLq~~~a~Ik~~t------~hLk-glkIAIMGC 679 (706)
+.+.+.+. ..+.-|+++||-...+ ++++||..|. .+||...++.++.+.+ .+|| -.||||=||
T Consensus 160 gI~~~d~~-~i~~~l~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~LPrKfkiaisg~ 238 (593)
T PRK09567 160 EIPPEHAV-PVLEGLVDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYGLPRKFNVAFDGG 238 (593)
T ss_pred cCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcCCCCCeEEEEECC
Confidence 34445552 3456667777754322 5789998766 4799999999998764 2488 689999999
Q ss_pred cccCccccccCceeeecc
Q 005248 680 IVNGPGEMADADFGYVGG 697 (706)
Q Consensus 680 IVNGPGEmadAD~GyvG~ 697 (706)
..|-+ ...-.|+|++..
T Consensus 239 ~~~~~-~~~~nDigf~a~ 255 (593)
T PRK09567 239 GRIAT-LEDTNDIGFQAV 255 (593)
T ss_pred Ccccc-cccccceeeEEE
Confidence 76544 444678888754
No 126
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.20 E-value=84 Score=33.04 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=95.3
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHh
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~--~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~ 179 (706)
-|+-|.=|... --+.|..++++||++|=+-+-.. .-.+.+..||+ .|...=|+=.-+=.......-+
T Consensus 60 ~~~DvHLMv~~-------P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~----~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 60 KPLDVHLMVTD-------PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRR----AGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred CCeEEEEEecC-------HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHH----cCCCEEEEeCCCCCHHHHHHHH
Confidence 56777777663 34578899999999887766532 33456666666 4776544433332223333334
Q ss_pred hhcCce---eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChH
Q 005248 180 ECFDKI---RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (706)
Q Consensus 180 ~~~~ki---RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~e 256 (706)
+.+|.| =+|||.-|- +|.... -+|++++-+..+++|..+.|.|..| ++.
T Consensus 129 ~~vD~VLvMsV~PGf~GQ---~fi~~~-------------l~KI~~lr~~~~~~~~~~~IeVDGG-I~~----------- 180 (229)
T PRK09722 129 HLLDKITVMTVDPGFAGQ---PFIPEM-------------LDKIAELKALRERNGLEYLIEVDGS-CNQ----------- 180 (229)
T ss_pred HhcCEEEEEEEcCCCcch---hccHHH-------------HHHHHHHHHHHHhcCCCeEEEEECC-CCH-----------
Confidence 445554 489997764 254322 3455557777778898999999654 433
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEE---E-e-cCChhHHHHHHHHHHHh
Q 005248 257 GMVESAFEFARICRKLDFHNFLFS---M-K-ASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 257 amVeSAle~~~i~e~~~f~~iviS---~-K-aSnv~~~i~ayrlla~~ 299 (706)
+.+..|.+.|-+-+|.. + | ..|....++..|...++
T Consensus 181 -------~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~ 221 (229)
T PRK09722 181 -------KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEA 221 (229)
T ss_pred -------HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35666777888877765 2 4 45777888888765544
No 127
>PRK12677 xylose isomerase; Provisional
Probab=79.06 E-value=15 Score=40.94 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecC--------CHHHHHHHHHHHHhhccCCcCcceeec-c---------CC---
Q 005248 112 NDTKDVAGTVEEVMRIADQGADLVRITVQ--------GKREADACFEIKNSLVQKNYNIPLVAD-I---------HF--- 170 (706)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvtv~--------~~~~A~al~~I~~~L~~~g~~iPLVAD-I---------HF--- 170 (706)
.++.|.+. -+.+++++|.+-|=+-.+ ..+....+++|++.|.+.|..++.|+= . .|
T Consensus 28 ~~~~~~~E---~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~ 104 (384)
T PRK12677 28 RPPLDPVE---AVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSN 104 (384)
T ss_pred CCCCCHHH---HHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCC
Confidence 33445554 456677788887766532 222234789999999999999987641 1 11
Q ss_pred CH---HHHH--------HHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 171 AP---SVAL--------RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 171 ~~---~~Al--------~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
++ +.|+ .|.+. +..|.+.||-.|..- +....|.+-+++..+.+..+.+.|+++|.-|||++
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~-------~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEY-------DAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccC-------cccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22 2222 23333 888999999554310 11345778889999999999999999887778886
Q ss_pred CCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCc-EEEE
Q 005248 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFS 280 (706)
Q Consensus 239 N~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~-iviS 280 (706)
=- .+. + +.+.-++.+.-+.++++++.|-.+ +-+-
T Consensus 178 Ep--kp~---e---p~~~~~l~t~~~al~li~~lg~~~~vGv~ 212 (384)
T PRK12677 178 EP--KPN---E---PRGDILLPTVGHALAFIATLEHPEMVGLN 212 (384)
T ss_pred cc--CCC---C---CCCCeeeCCHHHHHHHHHHhCCCccEEEe
Confidence 22 110 0 111335555556667777777654 4455
No 128
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=79.05 E-value=29 Score=40.38 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCC
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPG 190 (706)
++.+++.-.++.+.|+..|-+++-++.| ++++.+.++.|.+.| |+..-+.+=+.-..+.+..+.|++
T Consensus 74 a~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~---g~~~~I~~l~rc~~~di~~tvEAl-------- 142 (560)
T KOG2367|consen 74 AFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL---GYVPVICTLIRCHMDDIERTVEAL-------- 142 (560)
T ss_pred CcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC---CCCceEEEeeccchHHHHHHHHHh--------
Confidence 4577899999999999999999999976 578999999999973 665555555555555555544441
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhh--CCChHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY--GDSPRGMVESAFEFARI 268 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ry--gdt~eamVeSAle~~~i 268 (706)
.-||+--+-.=|++ .+++.+| +.+-+..+++|.|.+++
T Consensus 143 ----------------------------------~~aKr~~Vh~~~aT------Sd~~rey~~~kskeevi~~Ave~ikf 182 (560)
T KOG2367|consen 143 ----------------------------------KYAKRPRVHVFIAT------SDIHREYKLKKSKEEVIESAVEVIKF 182 (560)
T ss_pred ----------------------------------hccCcceEEEEecc------cHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11222223333343 2455555 46778889999999999
Q ss_pred HHHCCCCcEEEEEecCChhHHHHHHHHH
Q 005248 269 CRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (706)
Q Consensus 269 ~e~~~f~~iviS~KaSnv~~~i~ayrll 296 (706)
.+++||.+|-||.--+.--+..-++..+
T Consensus 183 vkslg~~~ieFSpEd~~rse~~fl~eI~ 210 (560)
T KOG2367|consen 183 VKSLGKWDIEFSPEDFGRSELEFLLEIL 210 (560)
T ss_pred HHhcccceEEECccccccCcHHHHHHHH
Confidence 9999999999998765444444444443
No 129
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=78.99 E-value=35 Score=37.89 Aligned_cols=133 Identities=14% Similarity=0.240 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe----cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 005248 117 VAGTVEEVMRIADQGADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvt----v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNi 192 (706)
+++-+++|......+-.+-.|- +|+.=..+.+.+|-+.|++. .|+.-|. +. .+-.||+++
T Consensus 50 ~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~---~~~~~~~-----------ei--t~E~~P~~l 113 (400)
T PRK07379 50 VEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQR---FGIAPDA-----------EI--SLEIDPGTF 113 (400)
T ss_pred HHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---CCCCCCC-----------EE--EEEeCCCcC
Confidence 4555666655433343444444 57765666677776665432 2332211 11 234799998
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC--ChHHHHHHHHHHHHHHH
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFARICR 270 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd--t~eamVeSAle~~~i~e 270 (706)
-. +.++..|+.|+- ||=+.-=|.++++++..|- ++ +.+.+.++.++
T Consensus 114 t~---------------------------e~l~~l~~~Gvn-rislGvQS~~d~~L~~l~R~~~~----~~~~~ai~~l~ 161 (400)
T PRK07379 114 DL---------------------------EQLQGYRSLGVN-RVSLGVQAFQDELLALCGRSHRV----KDIFAAVDLIH 161 (400)
T ss_pred CH---------------------------HHHHHHHHCCCC-EEEEEcccCCHHHHHHhCCCCCH----HHHHHHHHHHH
Confidence 32 245677778864 6666667788999999983 44 34556677888
Q ss_pred HCCCCcEEEEE----ecCChhHHHHHHHHHH
Q 005248 271 KLDFHNFLFSM----KASNPVVMVQAYRLLV 297 (706)
Q Consensus 271 ~~~f~~iviS~----KaSnv~~~i~ayrlla 297 (706)
+.||.++.+.+ ---+...+.+..+.+.
T Consensus 162 ~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 192 (400)
T PRK07379 162 QAGIENFSLDLISGLPHQTLEDWQASLEAAI 192 (400)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 89998665544 3334444444444433
No 130
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=78.87 E-value=69 Score=34.42 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe---cCCHH---------------HHHHHHHHHHhhccCCcCcceeeccCCCHHHH
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRIT---VQGKR---------------EADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvt---v~~~~---------------~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 175 (706)
..+.+..+++++++.+.|+.-|-++ .|+.. -.+.+++|.+.+.+.|. .|-+-=-.++...+
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~-~~~~~~~~lt~e~i 118 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL-LPHTNAGILTREEM 118 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC-CccccCCCCCHHHH
Confidence 6688999999999999999988888 23322 24455555555444444 34222123344443
Q ss_pred HHHhhhcCceeeCCCCCCcchhhcc--ccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC
Q 005248 176 LRVAECFDKIRVNPGNFADRRAQFE--QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 253 (706)
Q Consensus 176 l~a~~~~~kiRINPGNig~~~k~F~--~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd 253 (706)
..-.++-..+=++|+...+.- ++ ...++...|. .....++.|++.|+++..|+--| + |.
T Consensus 119 ~~Lk~ag~~l~~~~et~~e~l--~~~v~~~~~~~~~~--------~~l~~i~~a~~~Gi~~~~~~i~G-~--------gE 179 (336)
T PRK06245 119 EKLKEVNASMGLMLEQTSPRL--LNTVHRGSPGKDPE--------LRLETIENAGKLKIPFTTGILIG-I--------GE 179 (336)
T ss_pred HHHHHhCCCCCCCccccchhh--HHhhccCCCCCCHH--------HHHHHHHHHHHcCCceeeeeeeE-C--------CC
Confidence 322222112335555443211 00 1112222222 23556788888998887666555 2 35
Q ss_pred ChHHHHHHHHHHHHHHHHCC-CCcEE
Q 005248 254 SPRGMVESAFEFARICRKLD-FHNFL 278 (706)
Q Consensus 254 t~eamVeSAle~~~i~e~~~-f~~iv 278 (706)
|.+..++......++-.+.| |..+.
T Consensus 180 t~ed~~~~l~~l~~l~~~~gg~~~~~ 205 (336)
T PRK06245 180 TWEDRAESLEAIAELHERYGHIQEVI 205 (336)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 67777766554444434443 55544
No 131
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=78.73 E-value=77 Score=31.93 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCccee---e-c-----cCC
Q 005248 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV---A-D-----IHF 170 (706)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV---A-D-----IHF 170 (706)
++--|+-|.--.++-.+.+..++-...+.++|+--+++.. -+.++.|++. .++|++ . | +..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-----~~~i~~i~~~-----~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 5 GGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANG-----VEDIKAIRAV-----VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-----HHHHHHHHHh-----CCCCEEEEEecCCCCCCceE
Confidence 3445677888777778888888888899999999999753 5677777774 678886 2 2 322
Q ss_pred C--HHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH-cCCeEEEecCCCCCchh
Q 005248 171 A--PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 171 ~--~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake-~~~~IRIGvN~GSL~~~ 246 (706)
. .+-+.+|.++ ++-|=+.-.+.-.+. .+...++++.|++ .++++=.+++
T Consensus 75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~--------------------~~~~~~~i~~~~~~~~i~vi~~v~------- 127 (221)
T PRK01130 75 TPTLKEVDALAAAGADIIALDATLRPRPD--------------------GETLAELVKRIKEYPGQLLMADCS------- 127 (221)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCC--------------------CCCHHHHHHHHHhCCCCeEEEeCC-------
Confidence 1 2345666665 774443211110000 0145678999999 6776533321
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEec------CChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (706)
Q Consensus 247 il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~Ka------Snv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~ 320 (706)
++ +.++.+++.|++=++++.-. ..........+.+.+. .+-|+- .
T Consensus 128 -------t~--------ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-----~~iPvi---------a 178 (221)
T PRK01130 128 -------TL--------EEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-----VGCPVI---------A 178 (221)
T ss_pred -------CH--------HHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-----CCCCEE---------E
Confidence 11 22356788898766653210 1111224445555554 344542 3
Q ss_pred CCchhhHHHHHHHhhcCCCceeEE
Q 005248 321 DGRMKSAIGIGTLLQDGLGDTIRV 344 (706)
Q Consensus 321 ~G~IKSavGiG~LL~dGIGDTIRV 344 (706)
.|-|++.--+-.++..| -|-+-+
T Consensus 179 ~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 179 EGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred ECCCCCHHHHHHHHHCC-CCEEEE
Confidence 45666666666677666 455444
No 132
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=78.67 E-value=29 Score=37.26 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH-HHhhhcCceee------
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL-RVAECFDKIRV------ 187 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al-~a~~~~~kiRI------ 187 (706)
.+.+..++|+.++.+.|-..+.+-+....+.+.++.||+.+ + ++.|..|-|-.+.... ..++.++++.+
T Consensus 131 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~---~-~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP 206 (324)
T TIGR01928 131 ANDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRF---P-QIPLVIDANESYDLQDFPRLKELDRYQLLYIEEP 206 (324)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhC---C-CCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECC
Confidence 35688899999999999999999986556778888888865 2 4789999986544432 12333554432
Q ss_pred -CCCCCCcchhhcc----------ccccchHHHHHHHhh-------H-------HhhHHHHHHHHHHcCCeEEEec
Q 005248 188 -NPGNFADRRAQFE----------QLEYTDDEYQKELQH-------I-------EEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 188 -NPGNig~~~k~F~----------~~~YtdeeY~~El~~-------I-------~~~f~~vv~~ake~~~~IRIGv 238 (706)
.|.|+..- +.+. +..++-.++..-++. + =..+.++++.|.++|+++=+|-
T Consensus 207 ~~~~~~~~~-~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~ 281 (324)
T TIGR01928 207 FKIDDLSML-DELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGG 281 (324)
T ss_pred CChhHHHHH-HHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcc
Confidence 22333110 1111 122233333332221 1 1245689999999999998874
No 133
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.65 E-value=25 Score=36.25 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~ 194 (706)
.|.+..++-++.|.++|...+=||..+....+.+++++++.. ++.+=|=-=.++.-|..|+++=.+.=+-||= +
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~----~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~--~ 90 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP----DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL--T 90 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC----CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC--C
Confidence 478899999999999999999999999999999999998621 3667777778899999998873344488863 2
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f 274 (706)
.++++.|+++|+|.==|+ -||- .+..+.++|+
T Consensus 91 --------------------------~~v~~~~~~~~i~~iPG~--------------~Tpt--------Ei~~A~~~Ga 122 (204)
T TIGR01182 91 --------------------------PELAKHAQDHGIPIIPGV--------------ATPS--------EIMLALELGI 122 (204)
T ss_pred --------------------------HHHHHHHHHcCCcEECCC--------------CCHH--------HHHHHHHCCC
Confidence 259999999999985444 3553 3345677888
Q ss_pred CcEEEEE
Q 005248 275 HNFLFSM 281 (706)
Q Consensus 275 ~~iviS~ 281 (706)
+-++|==
T Consensus 123 ~~vKlFP 129 (204)
T TIGR01182 123 TALKLFP 129 (204)
T ss_pred CEEEECC
Confidence 8877743
No 134
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=78.51 E-value=36 Score=37.00 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 005248 116 DVAGTVEEVMRIAD-QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (706)
Q Consensus 116 Dv~atv~Qi~~L~~-aGceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNi 192 (706)
.+++.+++|+.+.. .+.+.|-+. +|+.-..+.+..|.+.+.+ +.++ -++ +. .+-.||+++
T Consensus 35 y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~--~~~~--~~~-----------ei--tie~~p~~~ 97 (374)
T PRK05799 35 YIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKK--LNKK--EDL-----------EF--TVEGNPGTF 97 (374)
T ss_pred HHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHh--CCCC--CCC-----------EE--EEEeCCCcC
Confidence 47888888876532 234555555 5654334445555554332 2111 011 11 234689888
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHC
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~ 272 (706)
-+ +.++..++.|+. ||-+.-=|++++++...|-.. =++.+++.++.+.+.
T Consensus 98 t~---------------------------e~l~~l~~~G~~-rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~ 147 (374)
T PRK05799 98 TE---------------------------EKLKILKSMGVN-RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKL 147 (374)
T ss_pred CH---------------------------HHHHHHHHcCCC-EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHc
Confidence 32 367778888864 666666889999999988321 155677778889999
Q ss_pred CCCcEEEEE----ecCChhHHHHHHHHHHH
Q 005248 273 DFHNFLFSM----KASNPVVMVQAYRLLVA 298 (706)
Q Consensus 273 ~f~~iviS~----KaSnv~~~i~ayrlla~ 298 (706)
||.+|.+.+ ---+...+.+..+.+.+
T Consensus 148 g~~~v~~dli~GlPgqt~e~~~~~l~~~~~ 177 (374)
T PRK05799 148 GFNNINVDLMFGLPNQTLEDWKETLEKVVE 177 (374)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 997665443 34455555555555543
No 135
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.48 E-value=47 Score=40.04 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=113.4
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------EEe-----cCCHHHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------RIT-----VQGKREADACFE 150 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiV-----------Rvt-----v~~~~~A~al~~ 150 (706)
+++||++.+ .|-|.+-.|++..+.| ++..++=..+.++-|+-+| |.. .-+.+..+.+++
T Consensus 402 P~~i~~~~l--~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~ 479 (765)
T PRK08255 402 PFRLRGLTL--KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKR 479 (765)
T ss_pred ccccCCEee--CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHH
Confidence 477777777 6788888887655444 5666777788888888887 221 115567788999
Q ss_pred HHHhhccC-CcCcceeeccCCCHHHHHHHhhh------cC---ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhH
Q 005248 151 IKNSLVQK-NYNIPLVADIHFAPSVALRVAEC------FD---KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (706)
Q Consensus 151 I~~~L~~~-g~~iPLVADIHF~~~~Al~a~~~------~~---kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f 220 (706)
|.+...+. |.. +.+=++.-.+.+.....+ .. ..=+-|..+-.........+.| .+|++.|.+.|
T Consensus 480 ~~~~vh~~gg~~--i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt----~~eI~~~i~~f 553 (765)
T PRK08255 480 IVDFVHANSDAK--IGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMT----RADMDRVRDDF 553 (765)
T ss_pred HHHHHHhcCCce--EEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHHH
Confidence 98888877 343 344433334433221110 00 0013444432211111223444 45777888888
Q ss_pred HHHHHHHHHcCCe-EEEecCCCCCch--------hHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCC
Q 005248 221 SPLVEKCKKYGRA-VRIGTNHGSLSD--------RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (706)
Q Consensus 221 ~~vv~~ake~~~~-IRIGvN~GSL~~--------~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSn 285 (706)
..-.+.|++.|.- |=|=.-||.|-. +--.+||.+.|.-..=.+|-++.+++.==.|+.|++|-|-
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc
Confidence 8888888888854 445555665533 3344688777766667777777776642247799999884
No 136
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.43 E-value=16 Score=36.11 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCC-H-H-HHHHHhhh-cCcee
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFA-P-S-VALRVAEC-FDKIR 186 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~-~-~Al~a~~~-~~kiR 186 (706)
|..|.+..++=+.+| +.|-+++=++ .......+.++.|++. --+.++++|+|+- + + .+..++++ ++-|=
T Consensus 7 D~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~----~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 7 DLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEA----FPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred cCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 667788887777777 7788887774 3334446777777764 1157899999864 2 2 35566665 66554
Q ss_pred eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 187 INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
+..-. +. ....++++.|+++|+++=++
T Consensus 82 vh~~~-~~-----------------------~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 82 VLGVA-DD-----------------------ATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EeccC-CH-----------------------HHHHHHHHHHHHcCCEEEEE
Confidence 43221 10 13466999999999877554
No 137
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=78.19 E-value=8.7 Score=41.64 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCEEEEec----CCH----------------------H-----------HHHHHHHHHHhhccCCcC
Q 005248 119 GTVEEVMRIADQGADLVRITV----QGK----------------------R-----------EADACFEIKNSLVQKNYN 161 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv----~~~----------------------~-----------~A~al~~I~~~L~~~g~~ 161 (706)
+|+++..+-+++|+++||-|- ++. + .-+-|+++++. .+
T Consensus 120 stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-----~~ 194 (283)
T cd04727 120 RNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-----GR 194 (283)
T ss_pred CCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-----cC
Confidence 467788888999999999994 330 0 11345566653 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 162 iPLV--ADIHF-~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
+|+| |--.. +|.-|..+++. ++.|=+.=+=+...+ ..-.-.+|.+.++++.+ ...|+|..+..+-+| .|
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d-----P~~~tk~f~~ai~~~~~-~~~~~e~~~~~~~~m-~~ 267 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN-----PEKRARAIVEAVTHYDD-PEILAEVSEGLGEAM-VG 267 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC-----HHHHHHHHHHHHHhcCC-HHHHHHHHcccccCC-CC
Confidence 9997 99888 89988888886 887776543332111 01113457777777776 778888888888888 68
Q ss_pred cCCCCCch
Q 005248 238 TNHGSLSD 245 (706)
Q Consensus 238 vN~GSL~~ 245 (706)
.|-.||+.
T Consensus 268 ~~~~~~~~ 275 (283)
T cd04727 268 IDIASLKE 275 (283)
T ss_pred cccccCCH
Confidence 88888865
No 138
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.16 E-value=69 Score=34.34 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHH-HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCce
Q 005248 115 KDVAGTVEEVMRIADQGADLVRIT-------VQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKI 185 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvt-------v~~~~~-A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ki 185 (706)
-.++..++=+..|.++|.+.+=+. +|.+.+ .+.+..|.+. .+..+...+- |.+=...|+++ ++.|
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~---~~~~~~~l~~---~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR---PGVTYAALTP---NLKGLEAALAAGADEV 96 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc---CCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 456777888889999999999997 666554 3455566531 2333322222 33333344555 8888
Q ss_pred eeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC--CCCCchhHHHhhCCChHHHHHHH
Q 005248 186 RVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGDSPRGMVESA 262 (706)
Q Consensus 186 RIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN--~GSL~~~il~rygdt~eamVeSA 262 (706)
+|= |-+=....+ .+..-.+..-+++.+.|+.||++|..++..+- .|.-. .|.++ .+-.
T Consensus 97 ~i~~~~s~~~~~~----------n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~---~~~~ 157 (287)
T PRK05692 97 AVFASASEAFSQK----------NINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP---PEAV 157 (287)
T ss_pred EEEEecCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC---HHHH
Confidence 863 111000000 01111233445678899999999999985543 22211 11222 2344
Q ss_pred HHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 263 FEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 263 le~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
++.++.+.+.|-+ .|++|-| +|..+-+-.+.|.++
T Consensus 158 ~~~~~~~~~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 158 ADVAERLFALGCY--EISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHHHHHHHcCCc--EEEeccccCccCHHHHHHHHHHHHHh
Confidence 5677777888887 4666655 455555544444444
No 139
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=78.16 E-value=72 Score=34.08 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHH-HHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc--Cccee--eccCCCHHHHHHHhhh-cCcee
Q 005248 115 KDVAGTVEEVMRI-ADQGADLVRITVQ--GKREADACFEIKNSLVQKNY--NIPLV--ADIHFAPSVALRVAEC-FDKIR 186 (706)
Q Consensus 115 ~Dv~atv~Qi~~L-~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~--~iPLV--ADIHF~~~~Al~a~~~-~~kiR 186 (706)
-.++.-++=++.| .++|.+.+=++.| +.++.++++.|.+.-...+. ++-++ +|. .+-+..|.++ ++.|+
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~A~~~g~~~i~ 92 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDG---DKSVDWIKSAGAKVLN 92 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCc---HHHHHHHHHCCCCEEE
Confidence 3456667777776 5669999999988 88889999999864211111 12222 232 2333344455 78777
Q ss_pred eCC-CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHH
Q 005248 187 VNP-GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (706)
Q Consensus 187 INP-GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~ 265 (706)
|-- ..=..-.+ .+..-.+..-+++.++++.||++|..++++.-. .+ .-|-.+|+ -.++.
T Consensus 93 i~~~~S~~h~~~----------~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~----~~~r~~~~----~~~~~ 152 (280)
T cd07945 93 LLTKGSLKHCTE----------QLRKTPEEHFADIREVIEYAIKNGIEVNIYLED--WS----NGMRDSPD----YVFQL 152 (280)
T ss_pred EEEeCCHHHHHH----------HHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe--CC----CCCcCCHH----HHHHH
Confidence 642 11000000 011223455567788999999999999988742 10 11112343 33456
Q ss_pred HHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHH
Q 005248 266 ARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVA 298 (706)
Q Consensus 266 ~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~ 298 (706)
++.+.+.|-+. |+++-+ +|..+.+-.+.+.+
T Consensus 153 ~~~~~~~G~~~--i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 153 VDFLSDLPIKR--IMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHcCCCE--EEecCCCCCCCHHHHHHHHHHHHh
Confidence 66677888875 666654 45544444444433
No 140
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=77.74 E-value=4.9 Score=44.57 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCEEEE--------ecCCH-----HHHHHHHHHHHhhccCCcCcceeec--cCCCHHHHHHHhhhcC
Q 005248 119 GTVEEVMRIADQGADLVRI--------TVQGK-----READACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAECFD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRv--------tv~~~-----~~A~al~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~a~~~~~ 183 (706)
+|-++.+.|.+||+|.||| |++-. -...|+.+..+..+ ++.+|+||| |++..+++.+=+-..+
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~--~~gvpiIADGGi~~sGDI~KAlaaGAd 237 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAH--GLGGQIVSDGGCTVPGDVAKAFGGGAD 237 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHH--HcCCCEEecCCcccccHHHHHHHcCCC
Confidence 5778899999999999994 43322 35566666666433 477899999 8999988864332355
Q ss_pred ceee
Q 005248 184 KIRV 187 (706)
Q Consensus 184 kiRI 187 (706)
.|=+
T Consensus 238 ~VMl 241 (346)
T PRK05096 238 FVML 241 (346)
T ss_pred EEEe
Confidence 4443
No 141
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=77.38 E-value=8.2 Score=44.61 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=53.8
Q ss_pred CCChhhHhHHHHHHHHHhhcccCC-----ceEecc---CCCCcccccHHHHHHHHHHH----------------------
Q 005248 616 GQDFDFLRDTSFNLLQGCRMRNTK-----TEYVSC---PSCGRTLFDLQEISAEIREK---------------------- 665 (706)
Q Consensus 616 ~~p~~ev~~~a~~ILqa~rlR~~k-----te~ISC---PsCGRTlfDLq~~~a~Ik~~---------------------- 665 (706)
+.+.+.+. -.+.-|+++||-... +.-|.| |.||-...|.++++.+|.+.
T Consensus 105 gI~~~~l~-~v~~~L~~~GL~t~~a~gd~~RnV~c~~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (541)
T TIGR02041 105 GILKRNLK-AVHQAIHSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTE 183 (541)
T ss_pred CCChhHHH-HHHHHHHHcCCCccccCCCCCCceeCCCCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCc
Confidence 34444442 234556677775332 223544 56888888888888888552
Q ss_pred -------hCCCC-CCeEEEEcccccCccccccCceeeeccC
Q 005248 666 -------TSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA 698 (706)
Q Consensus 666 -------t~hLk-glkIAIMGCIVNGPGEmadAD~GyvG~~ 698 (706)
...|| -.||||=||.-|. ....-+|+|+++..
T Consensus 184 ~~~~~~~~~~LPrKfKi~isg~~~~~-~~~~~~DiG~~a~~ 223 (541)
T TIGR02041 184 EVEPIYGPTYLPRKFKTGVVIPPIND-VDVYANDLGFVAIA 223 (541)
T ss_pred ccCccccccCCCCCcEEEEECCCCcc-ccccccceEEEEEE
Confidence 12477 6899999999774 56677899998753
No 142
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.14 E-value=5.5 Score=40.08 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 120 TVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~--~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
+.+|+..+.++|+++|=+-.+... +.+.+.++.+.+++.+ ++|++.+.| ++.-|..+.+. ++-|-+|+..+
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~-t~~ea~~a~~~G~d~i~~~~~g~ 154 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS-TLEEALNAAKLGFDIIGTTLSGY 154 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC-CHHHHHHHHHcCCCEEEccCccc
Confidence 567999999999998866543211 1113334444444456 899999987 66777777775 88887776544
No 143
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.94 E-value=41 Score=35.65 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCCH--HH
Q 005248 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAP--SV 174 (706)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~--~~ 174 (706)
||+.+-++....+....|.+..++++.++.+.|-..+.+-+.. .++.+-+..|++. .| +++|..|.|-.. .-
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~---~g-~~~l~vD~n~~~~~~~ 192 (316)
T cd03319 117 GGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA---AP-DARLRVDANQGWTPEE 192 (316)
T ss_pred CCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh---CC-CCeEEEeCCCCcCHHH
Confidence 4545555544433344678999999999999999999998742 4566777777764 35 789999988554 44
Q ss_pred HHHHhhhcCce
Q 005248 175 ALRVAECFDKI 185 (706)
Q Consensus 175 Al~a~~~~~ki 185 (706)
|++.++.++.+
T Consensus 193 A~~~~~~l~~~ 203 (316)
T cd03319 193 AVELLRELAEL 203 (316)
T ss_pred HHHHHHHHHhc
Confidence 55544555443
No 144
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.70 E-value=17 Score=33.89 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=52.4
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH-------HHHHHHHhhccCCcCcceeeccCCCHHH-----
Q 005248 107 QTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREAD-------ACFEIKNSLVQKNYNIPLVADIHFAPSV----- 174 (706)
Q Consensus 107 QSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~-------al~~I~~~L~~~g~~iPLVADIHF~~~~----- 174 (706)
=||+++.- +..+++++.+.+.|+++|-+-..+..... .+..+++ ..++|+++++=.+...
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (200)
T cd04722 4 ALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAA-----ETDLPLGVQLAINDAAAAVDI 75 (200)
T ss_pred eccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHh-----hcCCcEEEEEccCCchhhhhH
Confidence 35666654 77899999999999999988765533332 2445554 3679999887443222
Q ss_pred -HHHHhhh-cCceeeCCCCC
Q 005248 175 -ALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 175 -Al~a~~~-~~kiRINPGNi 192 (706)
|..+.+. ++.|=||.++.
T Consensus 76 ~a~~~~~~g~d~v~l~~~~~ 95 (200)
T cd04722 76 AAAAARAAGADGVEIHGAVG 95 (200)
T ss_pred HHHHHHHcCCCEEEEeccCC
Confidence 2345554 88888888875
No 145
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.60 E-value=19 Score=39.03 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=58.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcCcceeeccCCC--H
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHFA--P 172 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~--~-~~~A~al~~I~~~L~~~g~~iPLVADIHF~--~ 172 (706)
+||.. =.|....+....+.+..++|+.++.+.|..-+.+-+. + .++.+.+..||+. -|-++.|..|-|-. +
T Consensus 124 lGg~~-~~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~---~g~~~~l~vDaN~~~~~ 199 (355)
T cd03321 124 LGGNP-RPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA---VGDGVGLMVDYNQSLTV 199 (355)
T ss_pred hCCCC-CCeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh---hCCCCEEEEeCCCCcCH
Confidence 35642 2455554444456788899999999999999988773 3 3578888888885 35579999998854 4
Q ss_pred HHHHHHhhhcCce
Q 005248 173 SVALRVAECFDKI 185 (706)
Q Consensus 173 ~~Al~a~~~~~ki 185 (706)
.-|+..++.++++
T Consensus 200 ~~A~~~~~~l~~~ 212 (355)
T cd03321 200 PEAIERGQALDQE 212 (355)
T ss_pred HHHHHHHHHHHcC
Confidence 5555555556554
No 146
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.52 E-value=34 Score=36.85 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHH
Q 005248 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSV 174 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~ 174 (706)
.+...+++.++.+.|..-+.+-+...++.+.+..||+.+ | ++.|..|.+..+..
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~~~~d~~~l~~vr~~~---g-~~~l~lDaN~~~~~ 191 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIKPGWDVEPLKAVRERF---P-DIPLMADANSAYTL 191 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecChHHHHHHHHHHHHHC---C-CCeEEEECCCCCCH
Confidence 478899999999999999998885556788888888863 5 78899998765443
No 147
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=76.51 E-value=48 Score=36.12 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHc----CCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeC
Q 005248 115 KDVAGTVEEVMRIADQ----GADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~a----GceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRIN 188 (706)
+.+++-++||+...+. +.+-|=+. +|+.-..+.+.+|-+.+++. ++ -| ++. .+-.|
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~--~~-----------~ei--tiE~n 92 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPY---LS--KD-----------CEI--TTEAN 92 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---cC--CC-----------ceE--EEEeC
Confidence 4678888888865432 44555554 78776677777777665433 11 00 122 25679
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHH
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~ 267 (706)
|..+-. +.++..++.|+- ||-+.-=|++++++...|- .. .+.+++.++
T Consensus 93 P~~~~~---------------------------e~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lgR~~~---~~~~~~ai~ 141 (350)
T PRK08446 93 PNSATK---------------------------AWLKGMKNLGVN-RISFGVQSFNEDKLKFLGRIHS---QKQIIKAIE 141 (350)
T ss_pred CCCCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC---HHHHHHHHH
Confidence 988832 246777777865 5555556788899999883 22 456777788
Q ss_pred HHHHCCCCcE----EEEEecCChhHHHHHHHHHHH
Q 005248 268 ICRKLDFHNF----LFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 268 i~e~~~f~~i----viS~KaSnv~~~i~ayrlla~ 298 (706)
.+++.||.+| ++-+---+.....+..+.+.+
T Consensus 142 ~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~ 176 (350)
T PRK08446 142 NAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKE 176 (350)
T ss_pred HHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 8889999754 444444455555555555544
No 148
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=76.21 E-value=1.2e+02 Score=32.81 Aligned_cols=145 Identities=11% Similarity=0.195 Sum_probs=87.6
Q ss_pred HHcCCC-EEEEecCCHHHHHHHHHHHHhhccCCcC--------cceeeccCCCHHHHH-HHhhhcCceeeCCCCCCcchh
Q 005248 128 ADQGAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVADIHFAPSVAL-RVAECFDKIRVNPGNFADRRA 197 (706)
Q Consensus 128 ~~aGce-iVRvtv~~~~~A~al~~I~~~L~~~g~~--------iPLVADIHF~~~~Al-~a~~~~~kiRINPGNig~~~k 197 (706)
.+.|.+ +.=+|+-+. .-..|..+-.++.+.|+. -|--+|-||.|..-+ +-++.....+|.++-|-.+.-
T Consensus 79 ~~~g~~~i~Hltcr~~-n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp 157 (296)
T PRK09432 79 KRTGLEAAPHLTCIDA-TPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHP 157 (296)
T ss_pred HHhCCCeeeecccCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCC
Confidence 455776 556777775 555666666666666664 244455555443222 112223444554444422110
Q ss_pred hccccccchHHHHHHHhhHHhhH------------------HHHHHHHHHcC--CeEEEec---------------CCCC
Q 005248 198 QFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG--RAVRIGT---------------NHGS 242 (706)
Q Consensus 198 ~F~~~~YtdeeY~~El~~I~~~f------------------~~vv~~ake~~--~~IRIGv---------------N~GS 242 (706)
.-..++.+++++++|+ ..+++.|++.| +||..|+ .+-+
T Consensus 158 -------~~~~~~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~ 230 (296)
T PRK09432 158 -------EAKSAQADLINLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVR 230 (296)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCC
Confidence 0112455666666655 78999999998 9999997 4567
Q ss_pred CchhHHHhhC---CChHH----HHHHHHHHHHHHHHCCCCcEEEE
Q 005248 243 LSDRIMSYYG---DSPRG----MVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 243 L~~~il~ryg---dt~ea----mVeSAle~~~i~e~~~f~~iviS 280 (706)
+++.+++++- |.+++ =++-|.|.++-+.++|.+.|-|-
T Consensus 231 vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~y 275 (296)
T PRK09432 231 IPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFY 275 (296)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 7887777663 45543 35668888888888898877665
No 149
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=76.12 E-value=25 Score=35.56 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhh--hcCceeeCCCCC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNF 192 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~--~~~kiRINPGNi 192 (706)
|.+..++=+++|.+.+.+.+===+|. ++-+.++.+++ .+++|+.+|=++. +.-....++ +++-+.|-|...
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~L~~-----~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~ 179 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIEEPCAP-DDLEGYAALRR-----RTGIPIAADESVTTVDDALEALELGAVDILQIKPTRV 179 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEECCCCc-cCHHHHHHHHh-----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCcccc
Confidence 45555555666666555544311211 23455666666 4889999998765 333324444 599999999999
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCC
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~G 241 (706)
|.-. ...++++.|+++|+++=+|...+
T Consensus 180 GGi~----------------------~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 180 GGLT----------------------ESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred CCHH----------------------HHHHHHHHHHHcCCEEeecCCCC
Confidence 8733 56789999999999998875433
No 150
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.09 E-value=14 Score=39.94 Aligned_cols=106 Identities=9% Similarity=0.160 Sum_probs=69.4
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (706)
+|.+-.++|=- | ..-+.+.+++-+++|++.|-+.+==-++ ..+-+.+++++++ +++|+.+|=++ ++.-..
T Consensus 183 ~g~~~~l~vDa--N-~~~~~~~A~~~~~~l~~~~i~~iEeP~~-~~d~~~~~~l~~~-----~~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 183 VGDGVGLMVDY--N-QSLTVPEAIERGQALDQEGLTWIEEPTL-QHDYEGHARIASA-----LRTPVQMGENWLGPEEMF 253 (355)
T ss_pred hCCCCEEEEeC--C-CCcCHHHHHHHHHHHHcCCCCEEECCCC-CcCHHHHHHHHHh-----cCCCEEEcCCCcCHHHHH
Confidence 44444555421 2 2334555666666666665544432222 1244566777764 78999999775 555555
Q ss_pred HHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 177 ~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
..++ +++-+++.|..+|.-. .+.++.+.|+++|+++
T Consensus 254 ~~i~~~~~d~i~~~~~~~GGit----------------------~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 254 KALSAGACDLVMPDLMKIGGVT----------------------GWLRASALAEQAGIPM 291 (355)
T ss_pred HHHHhCCCCeEecCHhhhCCHH----------------------HHHHHHHHHHHcCCee
Confidence 5555 5999999999998733 5678999999999997
No 151
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.93 E-value=1.1e+02 Score=32.29 Aligned_cols=106 Identities=24% Similarity=0.276 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------HHHH-----------HHHHHHHHhhccCCcCcceeeccCCCH---
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG---------KREA-----------DACFEIKNSLVQKNYNIPLVADIHFAP--- 172 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~---------~~~A-----------~al~~I~~~L~~~g~~iPLVADIHF~~--- 172 (706)
|.+.|++=++.|.++|||++=+-+|- .++| +.+=++.+++++...++|++--.=+||
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 78999999999999999999999986 1111 122233344555568899986666666
Q ss_pred ----HHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 173 ----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 173 ----~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
+...+|+++ ++.+=|..--+ +...++++.||++|+..=.=+|-.+=.+|
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDlp~-------------------------ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADLPL-------------------------EESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCh-------------------------HHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 445566665 77665552111 13567999999999875445555554343
No 152
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=75.89 E-value=58 Score=35.37 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=51.5
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccc
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLE 203 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~ 203 (706)
++.|.++||+ .++|.+.+||..+. +.|++.|++-=-...+.-+..++++ .+.++=.++
T Consensus 46 ~~~l~~~G~~--~~~vas~~Ea~~lr-------~~G~~~~ilvl~~~~~~~~~~~~~~--~l~~~v~s~----------- 103 (367)
T TIGR00492 46 AKTLLQAGAD--YFGVANLEEAITLR-------KAGITAPILLLGGFFAEDLKILAAW--DLTTTVHSV----------- 103 (367)
T ss_pred HHHHHHCCCC--EEEECcHHHHHHHH-------hcCCCCCEEEEeCCCHHHHHHHHHc--CCEEEECCH-----------
Confidence 3467789986 68899999988754 3477766533223333333333332 122221221
Q ss_pred cchHHHHHHHhhHHhhHHHHHHHHHHcCC--eEEEecCCCCCchhHHHhhCCChHH
Q 005248 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 204 YtdeeY~~El~~I~~~f~~vv~~ake~~~--~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
+.++.+-+.|+++|+ .+=|=||.| |+|+|-+++.
T Consensus 104 --------------~~l~~l~~~a~~~~~~~~V~l~VdtG------m~R~Gi~~~e 139 (367)
T TIGR00492 104 --------------EQLQALEEALLKEPKRLKVHLKIDTG------MNRLGVKPDE 139 (367)
T ss_pred --------------HHHHHHHHHHHHcCCceEEEEEeeCC------CCCCCCChHH
Confidence 133445556666664 344556888 5999966653
No 153
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=75.62 E-value=25 Score=36.88 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHH---
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR--- 177 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~-~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~--- 177 (706)
-|+-|-=|.+- --+.+..++++||+++=+-+-. ..-.+.+..||+ .|. |+-|=+=+||.--++
T Consensus 69 ~~~DvHLMv~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~----~g~--~~kaGlalnP~Tp~~~i~ 135 (228)
T PRK08091 69 CFKDVHLMVRD-------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAK----QKT--TVLIGLCLCPETPISLLE 135 (228)
T ss_pred CCEEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----CCC--CceEEEEECCCCCHHHHH
Confidence 47777778763 3457788999999988776653 233456666666 354 333334445433333
Q ss_pred -HhhhcCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCch
Q 005248 178 -VAECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (706)
Q Consensus 178 -a~~~~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~ 245 (706)
-++.+|.|= +|||-=|- +|.... -+|++++-+.-+++|.-..|.|..| ++.
T Consensus 136 ~~l~~vD~VLiMtV~PGfgGQ---~f~~~~-------------l~KI~~lr~~~~~~~~~~~IeVDGG-I~~ 190 (228)
T PRK08091 136 PYLDQIDLIQILTLDPRTGTK---APSDLI-------------LDRVIQVENRLGNRRVEKLISIDGS-MTL 190 (228)
T ss_pred HHHhhcCEEEEEEECCCCCCc---cccHHH-------------HHHHHHHHHHHHhcCCCceEEEECC-CCH
Confidence 333466554 79996654 255222 3345556666678888899999655 443
No 154
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=75.62 E-value=12 Score=42.83 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCcee--eCCCCCCc
Q 005248 121 VEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPGNFAD 194 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~---~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiR--INPGNig~ 194 (706)
.+.+..|.++|++.|=|-+-.- .-.+.+++||+. --++|+|||.=-++.-|..++++ +|.|+ |-||-+-
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~----~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~- 301 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL----DLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMC- 301 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH----CCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccc-
Confidence 4678889999999987765443 344455566653 34799999999999999999997 99888 6677663
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
....||+--+.+ -..+.++++.|+++++||
T Consensus 302 -----ttr~~~~~g~~~-----~~a~~~~~~~~~~~~~~v 331 (475)
T TIGR01303 302 -----TTRMMTGVGRPQ-----FSAVLECAAEARKLGGHV 331 (475)
T ss_pred -----cCccccCCCCch-----HHHHHHHHHHHHHcCCcE
Confidence 233333322111 123334556667877765
No 155
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=75.52 E-value=75 Score=35.32 Aligned_cols=186 Identities=18% Similarity=0.182 Sum_probs=105.9
Q ss_pred eEEEceeecCCCCceEEEeccCC--CCCC---HHHHHHHHHHHHHcCCCEEEEe--------------------cCCHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTN--DTKD---VAGTVEEVMRIADQGADLVRIT--------------------VQGKRE 144 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t--~T~D---v~atv~Qi~~L~~aGceiVRvt--------------------v~~~~~ 144 (706)
++++|++.+ -|-|+.-.|++. .|.| ++..++--.+.++.|+-+|=.- ..+.+.
T Consensus 4 P~~ig~~~l--kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEI--KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEE--eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHH
Confidence 467777776 688888999642 2455 6788888888888777776211 112234
Q ss_pred HHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhhhcCceeeCCCCCCcchhh-ccccccchHHHHHHHhhHHhhHHH
Q 005248 145 ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQ-FEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 145 A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~~~~kiRINPGNig~~~k~-F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
.+.++++.+...+.|. ++++=++. ..+.+......-.+ =+-|..+-.+... ....+.| .+|++.|.+.|..
T Consensus 82 i~~~k~l~davh~~G~--~i~~QL~H~~Gr~~~~~~~~~~~-~~~ps~~~~~~~~~~~p~~mt----~~eI~~ii~~f~~ 154 (382)
T cd02931 82 IRTAKEMTERVHAYGT--KIFLQLTAGFGRVCIPGFLGEDK-PVAPSPIPNRWLPEITCRELT----TEEVETFVGKFGE 154 (382)
T ss_pred hHHHHHHHHHHHHcCC--EEEEEccCcCCCccCccccCCCC-ccCCCCCCCCcCCCCCCCcCC----HHHHHHHHHHHHH
Confidence 6788888888888776 45555532 24443211100001 1333333221000 0112233 3567788889999
Q ss_pred HHHHHHHcCCe-EEE-ecCCCCCch--------hHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecC
Q 005248 223 LVEKCKKYGRA-VRI-GTNHGSLSD--------RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 284 (706)
Q Consensus 223 vv~~ake~~~~-IRI-GvN~GSL~~--------~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaS 284 (706)
-.+.|++.|-- |=| |.|||-|=. +--.+||.+.|.=..=.+|-++-.++.==.++.|++|-|
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~ 226 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYS 226 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 99999998765 334 345587633 334458866554333444444444332115789999988
No 156
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=75.17 E-value=17 Score=41.52 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 005248 120 TVEEVMRIADQGADLVRITVQG---KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~---~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI--NPG 190 (706)
+.+.+..|.++|++++-+.+.. ....+.++.|+++ .-++|+++=-=.++.-|..++++ +|-|++ -||
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~----~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAK----YPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhh----CCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4889999999999999776542 2455666677664 23799886555778999999997 999985 365
No 157
>PRK14017 galactonate dehydratase; Provisional
Probab=74.81 E-value=15 Score=40.25 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=47.0
Q ss_pred CcCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 159 NYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 159 g~~iPLVADIH-F~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+++|+.+|=+ |+++-+...++ +++-+++.|+..|.-. ...++.+.|.++|+++=
T Consensus 226 ~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit----------------------~~~~ia~~A~~~gi~~~ 283 (382)
T PRK14017 226 QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGIT----------------------ECRKIAAMAEAYDVALA 283 (382)
T ss_pred cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHH----------------------HHHHHHHHHHHcCCeEe
Confidence 37899999966 45555555555 5999999999998733 56789999999999997
Q ss_pred EecCCC
Q 005248 236 IGTNHG 241 (706)
Q Consensus 236 IGvN~G 241 (706)
+|...+
T Consensus 284 ~h~~~~ 289 (382)
T PRK14017 284 PHCPLG 289 (382)
T ss_pred ecCCCC
Confidence 775433
No 158
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=74.73 E-value=6.2 Score=43.79 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHhhccCCcCcceeec--cCCCHHHHHHHhhhcC
Q 005248 119 GTVEEVMRIADQGADLVRITVQ-------------GKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAECFD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~-------------~~~~A~al~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~a~~~~~ 183 (706)
+|-++.+.|.++|+|.|||=+= +.-.+-++.+..+..+ .+.+|+||| |++...++.+=+-..|
T Consensus 158 ~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~--~~~v~iIADGGi~~sGDi~KAla~GAd 235 (352)
T PF00478_consen 158 VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAAR--DYGVPIIADGGIRTSGDIVKALAAGAD 235 (352)
T ss_dssp -SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHH--CTTSEEEEESS-SSHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhh--hccCceeecCCcCcccceeeeeeeccc
Confidence 5778899999999999999621 1124445555544332 468999999 8888887753222244
Q ss_pred cee
Q 005248 184 KIR 186 (706)
Q Consensus 184 kiR 186 (706)
.|=
T Consensus 236 ~VM 238 (352)
T PF00478_consen 236 AVM 238 (352)
T ss_dssp EEE
T ss_pred cee
Confidence 443
No 159
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=74.29 E-value=79 Score=33.31 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=91.3
Q ss_pred HHHHHcCCCEEEEe---------cCCH------HHHHHHHHHHHhhccCCcC-cceeeccCCCHH----HHHHHh----h
Q 005248 125 MRIADQGADLVRIT---------VQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPS----VALRVA----E 180 (706)
Q Consensus 125 ~~L~~aGceiVRvt---------v~~~------~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~----~Al~a~----~ 180 (706)
+-++++|++.+=++ .||. +-....+.|++ +.+ +|++||+-|-+- -+...+ +
T Consensus 26 ~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r-----~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 26 KQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRR-----GAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred HHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHh-----hCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 44567799988776 2332 34555566665 575 799999988732 222222 2
Q ss_pred h-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE--EEecCCCCCc-hhHHHhhCCChH
Q 005248 181 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLS-DRIMSYYGDSPR 256 (706)
Q Consensus 181 ~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I--RIGvN~GSL~-~~il~rygdt~e 256 (706)
+ ++.|-|--+ . .+.+.|++.++.+++| |+|...-++. ...-+.||.+.+
T Consensus 101 aGa~gv~iED~-----~----------------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 101 AGAAGVKIEGG-----E----------------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred cCCcEEEEcCc-----H----------------------HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 2 555544432 0 1233566666777776 7776332221 111133555555
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhH
Q 005248 257 GMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (706)
Q Consensus 257 amVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSa 327 (706)
+ .+.++|-++.+++.|-+=|.+-+. + .+.-+.++++ .+-|+-.- =||.+-||.+-..
T Consensus 154 ~-~~~ai~Ra~ay~~AGAd~i~~e~~--~----~e~~~~i~~~-----~~~P~~~~--gag~~~dgq~lv~ 210 (240)
T cd06556 154 A-GEQLIADALAYAPAGADLIVMECV--P----VELAKQITEA-----LAIPLAGI--GAGSGTDGQFLVL 210 (240)
T ss_pred H-HHHHHHHHHHHHHcCCCEEEEcCC--C----HHHHHHHHHh-----CCCCEEEE--ecCcCCCceEEeH
Confidence 5 567999999999999999999865 3 2333455665 56776542 2445556555433
No 160
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=74.15 E-value=36 Score=37.01 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHhhccCCcCcceeec--cCC---CHH---------HHH---
Q 005248 116 DVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVAD--IHF---APS---------VAL--- 176 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGce-iVRvtv~~~-~~A~al~~I~~~L~~~g~~iPLVAD--IHF---~~~---------~Al--- 176 (706)
|+++++++++++.++|+. ||=.|..+. ++++.|++|-++ +.|.+||= +|+ .|. +|.
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i 110 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRR-----TGVNIIASTGFYKEPFYPEWVREASVEELADLFI 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHH-----HT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHH-----hCCeEEEeCCCCccccCChhhhcCCHHHHHHHHH
Confidence 899999999999999985 777887776 889999999996 77888886 333 222 121
Q ss_pred -HHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCCh
Q 005248 177 -RVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (706)
Q Consensus 177 -~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ 255 (706)
+.-+.++.--|-||-|+-.-. +. ..|+.| ++-|+....+.++.|.||=+=+..|.
T Consensus 111 ~Ei~~GidgT~ikaG~Ik~~~~-~~--~it~~E--------~k~lrAaa~A~~~TG~pI~~H~~~g~------------- 166 (308)
T PF02126_consen 111 REIEEGIDGTGIKAGIIKEIGS-SN--PITPLE--------EKVLRAAARAHKETGAPISTHTGRGT------------- 166 (308)
T ss_dssp HHHHT-STTSSB-ESEEEEEEB-TT--BCEHHH--------HHHHHHHHHHHHHHT-EEEEEESTTG-------------
T ss_pred HHHHhcCCCCccchhheeEeec-cC--CCCHHH--------HHHHHHHHHHHHHhCCeEEEcCCCCC-------------
Confidence 122236766678998854221 11 111111 44678889999999999966665443
Q ss_pred HHHHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHh
Q 005248 256 RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 256 eamVeSAle~~~i~e~~~f--~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
..++|.+++++++|. ++++|+ -.|...=...++.|+++
T Consensus 167 ----~~~~e~~~il~e~Gv~~~rvvig--H~D~~~D~~y~~~la~~ 206 (308)
T PF02126_consen 167 ----RMGLEQLDILEEEGVDPSRVVIG--HMDRNPDLDYHRELADR 206 (308)
T ss_dssp ----TCHHHHHHHHHHTT--GGGEEET--SGGGST-HHHHHHHHHT
T ss_pred ----cCHHHHHHHHHHcCCChhHeEEe--CCCCCCCHHHHHHHHhc
Confidence 126788999999998 778776 33333335567777765
No 161
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.05 E-value=39 Score=34.95 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig 193 (706)
..|.+.+++-++.|.+.|.+++=||..+....++++.++++. -++-+-||.=.+..-|..|+++=.++=+-|| +
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~----p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~-~- 96 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV----PEALIGAGTVLNPEQLAQAIEAGAQFIVSPG-L- 96 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC----CCCEEEEeeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 457889999999999999999999999999999999999862 2477999999999999999988556667786 2
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCC
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~ 273 (706)
+ .++++.|++++++.==|+ .||.. +.-+.++|
T Consensus 97 ~--------------------------~~vi~~a~~~~i~~iPG~--------------~TptE--------i~~a~~~G 128 (212)
T PRK05718 97 T--------------------------PPLLKAAQEGPIPLIPGV--------------STPSE--------LMLGMELG 128 (212)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHHH--------HHHHHHCC
Confidence 1 248999999999873244 35532 44567889
Q ss_pred CCcEEE
Q 005248 274 FHNFLF 279 (706)
Q Consensus 274 f~~ivi 279 (706)
++-+++
T Consensus 129 a~~vKl 134 (212)
T PRK05718 129 LRTFKF 134 (212)
T ss_pred CCEEEE
Confidence 988887
No 162
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=73.88 E-value=83 Score=35.15 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=121.5
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC----HHHHHHHHHHHHHcCCCEEEEe--cCC--------------HHHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD----VAGTVEEVMRIADQGADLVRIT--VQG--------------KREADACF 149 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D----v~atv~Qi~~L~~aGceiVRvt--v~~--------------~~~A~al~ 149 (706)
.+++|++.+ .|-|++..||.-...+ .+..++=-.+.++-|.-++=++ +.+ .+..+.++
T Consensus 9 P~~lg~~~L--~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~ 86 (363)
T COG1902 9 PLKLGGLTL--KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLK 86 (363)
T ss_pred CeeECCEEe--ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHH
Confidence 478888888 8999999998766542 6778888888899555533332 222 23388999
Q ss_pred HHHHhhccCCcCcceeeccCCCHHHHHHHhhh------cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHH
Q 005248 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAEC------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 223 (706)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~------~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~v 223 (706)
++.+...+.|. .++.=||-..+.+...... -..++..++. ....++.| .+|+++|-+.|..=
T Consensus 87 ~vt~avH~~G~--~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~------~~~pr~mt----~~eI~~ii~~f~~A 154 (363)
T COG1902 87 RLTEAVHAHGA--KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGR------RATPRELT----EEEIEEVIEDFARA 154 (363)
T ss_pred HHHHHHHhcCC--eEEEEeccCcccccccccCCCcccCCCccccccCC------CCCCccCC----HHHHHHHHHHHHHH
Confidence 99999999888 6677777776655322211 1223332220 12233344 35678888888888
Q ss_pred HHHHHHcCC-eEEEecCCCCCchhHHH--------hhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH------
Q 005248 224 VEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV------ 288 (706)
Q Consensus 224 v~~ake~~~-~IRIGvN~GSL~~~il~--------rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~------ 288 (706)
.+.||+-|- -|-|=--||-|=+.+++ +||.+.|.-..=++|-++-.++.==.+..|.++-|-...
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~ 234 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL 234 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 888888875 46676778888776666 577666554444444444333322222255555553211
Q ss_pred HHHHHHHHHHhhhcCC
Q 005248 289 MVQAYRLLVAEMYVHG 304 (706)
Q Consensus 289 ~i~ayrlla~~~~~eg 304 (706)
.++-+..|++.+++.|
T Consensus 235 ~~~e~~~la~~L~~~G 250 (363)
T COG1902 235 TIEEAVELAKALEEAG 250 (363)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 2334444555544444
No 163
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=73.81 E-value=44 Score=32.73 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE------ecCCHH-HHHHHHHHHHhhccCCcCcceeeccCCC--HHHHHHHhhh-cCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRI------TVQGKR-EADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC-FDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRv------tv~~~~-~A~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al~a~~~-~~k 184 (706)
.|.+.+.++++.+.++|++.+=+ .+|+.. .-+.++.|++. .+.|+++|+=.. .+.+..+.++ ++-
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-----~~~~v~v~lm~~~~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-----TDLPIDVHLMVENPDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-----CCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 57889999999999999999998 445433 23445555542 456765433222 2334444454 665
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN 239 (706)
|=+ |+..- +.....++.+|++|+.+-++++
T Consensus 83 v~v-h~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~ 112 (210)
T TIGR01163 83 ITV-HPEAS------------------------EHIHRLLQLIKDLGAKAGIVLN 112 (210)
T ss_pred EEE-ccCCc------------------------hhHHHHHHHHHHcCCcEEEEEC
Confidence 544 33210 1234567899999988877764
No 164
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.75 E-value=7.2 Score=44.95 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCEEEEe--------c--------CCHHHHHHHHHHHHhhccCCcCcceeeccCCCH-HHHHHHhhh
Q 005248 119 GTVEEVMRIADQGADLVRIT--------V--------QGKREADACFEIKNSLVQKNYNIPLVADIHFAP-SVALRVAEC 181 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvt--------v--------~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~-~~Al~a~~~ 181 (706)
+|.++.++++++|||.|++. + |-..+-..++++.+. .++|+|||-.+.. .-+.+|+..
T Consensus 298 ~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~ 372 (505)
T PLN02274 298 VTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTL 372 (505)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHc
Confidence 34556666788999999985 1 222344456666653 6799999966653 223344443
Q ss_pred -cCce
Q 005248 182 -FDKI 185 (706)
Q Consensus 182 -~~ki 185 (706)
++.|
T Consensus 373 GA~~V 377 (505)
T PLN02274 373 GASTV 377 (505)
T ss_pred CCCEE
Confidence 5544
No 165
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=73.71 E-value=7.7 Score=43.03 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCEEEEe------cCCH-------HHHHHHHHHHHhhccCCcCcceeec--cCCCHHHHHHHhhhcC
Q 005248 119 GTVEEVMRIADQGADLVRIT------VQGK-------READACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAECFD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvt------v~~~-------~~A~al~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~a~~~~~ 183 (706)
.|.++.++|.+||+|.|+|. +-+. ....++.++.+..+ ++.+|++|| |++...++.+-+-..+
T Consensus 159 ~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 159 VTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 46788899999999999987 1111 36788888888654 567999999 7888888764333355
Q ss_pred ceeeC
Q 005248 184 KIRVN 188 (706)
Q Consensus 184 kiRIN 188 (706)
.|=+-
T Consensus 237 ~VMlG 241 (343)
T TIGR01305 237 FVMLG 241 (343)
T ss_pred EEEEC
Confidence 55543
No 166
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=73.51 E-value=6.1 Score=45.21 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCEEE--------EecCCH-----HHHHHHHHHHHhhccCCcCcceeecc--CCCHHHHH
Q 005248 119 GTVEEVMRIADQGADLVR--------ITVQGK-----READACFEIKNSLVQKNYNIPLVADI--HFAPSVAL 176 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVR--------vtv~~~-----~~A~al~~I~~~L~~~g~~iPLVADI--HF~~~~Al 176 (706)
+|.++++.|+++|++.|+ +|+... .-+.++-+..+.+++. .+|+|||- |+...++.
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~k 345 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVAL 345 (475)
T ss_pred CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHH
Confidence 567788889999999999 554432 4466666665555443 79999995 44444443
No 167
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=73.31 E-value=60 Score=36.44 Aligned_cols=138 Identities=9% Similarity=0.116 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 005248 116 DVAGTVEEVMRIADQ--GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (706)
Q Consensus 116 Dv~atv~Qi~~L~~a--GceiVRvt----v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINP 189 (706)
-+++-+++|..+.+. +..+.+|. +|+.-..+.|.+|-+.+++ ..++.. .+ ++. .+-.||
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~-~~~~~~-~~-----------~ei--tiE~~P 136 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVER-VLGVDL-GN-----------IPK--SVETSP 136 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHH-hCCCCC-CC-----------ceE--EEEeCc
Confidence 467888888877654 34566665 5665556666666665432 111100 00 011 245789
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
.++-. +.++..++.|+. ||-+--=|++++.+..+|-.. =.+.+.+.++.|
T Consensus 137 ~~lt~---------------------------e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l 186 (430)
T PRK08208 137 ATTTA---------------------------EKLALLAARGVN-RLSIGVQSFHDSELHALHRPQ--KRADVHQALEWI 186 (430)
T ss_pred CcCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 88822 356777777753 666666788899999988322 134566778888
Q ss_pred HHCCCCcE----EEEEecCChhHHHHHHHHHHH
Q 005248 270 RKLDFHNF----LFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 270 e~~~f~~i----viS~KaSnv~~~i~ayrlla~ 298 (706)
.+.||.+| ++-+---+...+.+..+.+.+
T Consensus 187 ~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~ 219 (430)
T PRK08208 187 RAAGFPILNIDLIYGIPGQTHASWMESLDQALV 219 (430)
T ss_pred HHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 99999754 444555555555555555553
No 168
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=72.76 E-value=48 Score=36.87 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=63.8
Q ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCC-------
Q 005248 122 EEVMRIADQ---GADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN------- 191 (706)
Q Consensus 122 ~Qi~~L~~a---GceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGN------- 191 (706)
+++....++ |..+ ++++.+..+.+.+.++.+.+ +....+ .+||||+.
T Consensus 99 ~~l~~a~~~~~~g~~v-~i~vDs~~EL~~l~~~a~~~---~~~~~v-------------------~lRinp~~~~~~~~~ 155 (409)
T cd06830 99 EYIELALLARKLGHNV-IIVIEKLSELDLILELAKKL---GVKPLL-------------------GVRIKLASKGSGKWQ 155 (409)
T ss_pred HHHHHHHhcCcCCceE-EEEECCHHHHHHHHHHHHHc---CCCceE-------------------EEEEccCCCCCccee
Confidence 445554444 5666 88999999988888887642 111111 27999984
Q ss_pred -CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE-e--cCCCCCchhHHHhhCCChHHHHHHHHHHHH
Q 005248 192 -FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI-G--TNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (706)
Q Consensus 192 -ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI-G--vN~GSL~~~il~rygdt~eamVeSAle~~~ 267 (706)
.+....+|-... +.+.++++.+++++..+|+ | .-.||=-.+. +.| ...++.+++.++
T Consensus 156 ~~~~~~sKFGi~~--------------~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~-~~~----~~~~~~~~~~~~ 216 (409)
T cd06830 156 ESGGDRSKFGLTA--------------SEILEVVEKLKEAGMLDRLKLLHFHIGSQITDI-RRI----KSALREAARIYA 216 (409)
T ss_pred ccCCCCCCCCCCH--------------HHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCH-HHH----HHHHHHHHHHHH
Confidence 233333455322 3567788999998754542 3 3344432111 111 355666777777
Q ss_pred HHHHCCC
Q 005248 268 ICRKLDF 274 (706)
Q Consensus 268 i~e~~~f 274 (706)
.+++.|+
T Consensus 217 ~~~~~g~ 223 (409)
T cd06830 217 ELRKLGA 223 (409)
T ss_pred HHHHhCC
Confidence 7776664
No 169
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.63 E-value=42 Score=34.67 Aligned_cols=114 Identities=9% Similarity=0.017 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~ 194 (706)
.|.+..+..++.|.+.|...+=||..+..+.++++.|+++...+ -++-+=|=-=.++.-|..|+++=...=+-||--
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~-p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~-- 98 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDD-PEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN-- 98 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCC-CCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC--
Confidence 48899999999999999999999999999999999999862110 024444555678888888888745556778533
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f 274 (706)
.+|++.|+++|+|.==|+ -||. .+.-+.+.|.
T Consensus 99 --------------------------~~v~~~~~~~~i~~iPG~--------------~T~~--------E~~~A~~~Ga 130 (213)
T PRK06552 99 --------------------------RETAKICNLYQIPYLPGC--------------MTVT--------EIVTALEAGS 130 (213)
T ss_pred --------------------------HHHHHHHHHcCCCEECCc--------------CCHH--------HHHHHHHcCC
Confidence 349999999999985555 2442 2233346888
Q ss_pred CcEEE
Q 005248 275 HNFLF 279 (706)
Q Consensus 275 ~~ivi 279 (706)
+-++|
T Consensus 131 d~vkl 135 (213)
T PRK06552 131 EIVKL 135 (213)
T ss_pred CEEEE
Confidence 88887
No 170
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=72.46 E-value=36 Score=35.43 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=68.1
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH---
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL--- 176 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al--- 176 (706)
+-|+-|-=|.+ +-+ ..+..++++||+++=+-+-.. .-.+.+..||+. |+..=|+ +||.--+
T Consensus 62 ~~~~dvHLMv~----~P~---~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~----g~k~Gla----lnP~T~~~~i 126 (223)
T PRK08745 62 TAPIDVHLMVE----PVD---RIVPDFADAGATTISFHPEASRHVHRTIQLIKSH----GCQAGLV----LNPATPVDIL 126 (223)
T ss_pred CCCEEEEeccC----CHH---HHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHC----CCceeEE----eCCCCCHHHH
Confidence 35666777765 233 357788999999988776532 234566666664 6653333 4443333
Q ss_pred -HHhhhcCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCch
Q 005248 177 -RVAECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (706)
Q Consensus 177 -~a~~~~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~ 245 (706)
.-++.+|.|= +|||--|- +|.... -+|++.+-+..++++..++|.|..| ++.
T Consensus 127 ~~~l~~vD~VlvMtV~PGf~GQ---~fi~~~-------------l~KI~~l~~~~~~~~~~~~IeVDGG-I~~ 182 (223)
T PRK08745 127 DWVLPELDLVLVMSVNPGFGGQ---AFIPSA-------------LDKLRAIRKKIDALGKPIRLEIDGG-VKA 182 (223)
T ss_pred HHHHhhcCEEEEEEECCCCCCc---cccHHH-------------HHHHHHHHHHHHhcCCCeeEEEECC-CCH
Confidence 3333456554 79997764 255322 3355556666677888899999554 544
No 171
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=72.30 E-value=2.6 Score=34.42 Aligned_cols=13 Identities=62% Similarity=1.272 Sum_probs=11.5
Q ss_pred ceEeccCCCCccc
Q 005248 640 TEYVSCPSCGRTL 652 (706)
Q Consensus 640 te~ISCPsCGRTl 652 (706)
-+++.||+|||-|
T Consensus 44 ~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 44 DEIVFCPNCGRIL 56 (56)
T ss_pred CCeEECcCCCccC
Confidence 6899999999975
No 172
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.24 E-value=41 Score=35.14 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig 193 (706)
..|.+..++.++.|.+.|...+=||-.+..+.++++.+++...++.-++-+=|=-=.++.-|..|+++=.+.=+-|| +
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~-~- 100 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL-F- 100 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-
Confidence 35889999999999999999999999999999999999865443322344445556788888888887556668886 3
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCC
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~ 273 (706)
+ ..|++.|+++|++.==|+ -||. .+.-+.++|
T Consensus 101 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~Tps--------Ei~~A~~~G 132 (222)
T PRK07114 101 N--------------------------PDIAKVCNRRKVPYSPGC--------------GSLS--------EIGYAEELG 132 (222)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHH--------HHHHHHHCC
Confidence 1 349999999999985555 2442 334466789
Q ss_pred CCcEEEE
Q 005248 274 FHNFLFS 280 (706)
Q Consensus 274 f~~iviS 280 (706)
++-++|=
T Consensus 133 a~~vKlF 139 (222)
T PRK07114 133 CEIVKLF 139 (222)
T ss_pred CCEEEEC
Confidence 9887774
No 173
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=72.17 E-value=1.6e+02 Score=32.55 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=106.5
Q ss_pred eEEEceeecCCCCceEEEeccC--CCCCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHH
Q 005248 90 TVMVGNVAIGSEHPIRVQTMTT--NDTKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADA 147 (706)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~--t~T~D---v~atv~Qi~~L~~aGceiVRvt-----------------v~~~~~A~a 147 (706)
.++||++.+ .|-|+.-.|++ ....| ++..++=..+.+ |+=+| |+ .-+.+..+.
T Consensus 6 P~~ig~~~l--kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA--g~GLI-i~e~~~v~~~~~~~~~~~~l~~d~~i~~ 80 (362)
T PRK10605 6 PLKVGAITA--PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA--SAGLI-ISEATQISAQAKGYAGAPGLHSPEQIAA 80 (362)
T ss_pred CeeECCEEe--ccccEECCcCcCccCCCCCCCCHHHHHHHHHHh--CCCEE-EECceeeCcccccCCCCCcccCHHHHHH
Confidence 577888777 78899999975 22234 666666666655 55555 22 124567788
Q ss_pred HHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchh--------------hccccccchHHHHHHH
Q 005248 148 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRA--------------QFEQLEYTDDEYQKEL 213 (706)
Q Consensus 148 l~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k--------------~F~~~~YtdeeY~~El 213 (706)
++++.+...+.|.. +++=+|-..+.+......-.+.-+-|..+-.... .....+.| .+|+
T Consensus 81 ~~~lad~vH~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt----~~eI 154 (362)
T PRK10605 81 WKKITAGVHAEGGH--IAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE----LEEI 154 (362)
T ss_pred HHHHHHHHHhCCCE--EEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC----HHHH
Confidence 99999998888774 5666655544442211000001133333311100 00112222 4567
Q ss_pred hhHHhhHHHHHHHHHHcCC-eEEEecCCCCCchhHHHh--------hCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEec
Q 005248 214 QHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSY--------YGDSPRGMVESAFEFARICRK-LDFHNFLFSMKA 283 (706)
Q Consensus 214 ~~I~~~f~~vv~~ake~~~-~IRIGvN~GSL~~~il~r--------ygdt~eamVeSAle~~~i~e~-~~f~~iviS~Ka 283 (706)
+.|.+.|..=.+.|++-|. -|=|=..||.|=..+|+- ||.+.|.=..=.+|-++-.++ .| .++ |.+|-
T Consensus 155 ~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg-~~~-igvRi 232 (362)
T PRK10605 155 PGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWG-ADR-IGIRI 232 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcC-CCe-EEEEE
Confidence 7888888888888888776 366777899998777764 786666544444555543333 34 334 77777
Q ss_pred C
Q 005248 284 S 284 (706)
Q Consensus 284 S 284 (706)
|
T Consensus 233 s 233 (362)
T PRK10605 233 S 233 (362)
T ss_pred C
Confidence 6
No 174
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=71.98 E-value=18 Score=38.34 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=95.8
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC-C-----cCccee--e-
Q 005248 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK-N-----YNIPLV--A- 166 (706)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~-g-----~~iPLV--A- 166 (706)
|||+ -+.|+++. ++|..+.+-+..|+++|.+| ++|=..=.+.+ .-+..+.+.+... + -.++++ .
T Consensus 34 I~Gd-~v~V~~Lip~g~dPH~ye~~p~d~~~l~~A--dlvv~~G~~~E--~wl~~~~~~~~~~~~~v~~~~~i~~~~~~~ 108 (287)
T cd01137 34 IAGD-RVNVTSIVPPGADPHEYEPTPSDIKKLSKA--DLILYNGLNLE--PWLERLVKNAGKDVPVVAVSEGIDPIPLEE 108 (287)
T ss_pred HcCC-eeEEEEecCCCCCccCCCCCHHHHHHHHhC--CEEEEcCCCcH--HHHHHHHHhcCCCCcEEEecCCccccccCc
Confidence 5655 47888885 56789999999999999976 66544334454 2566666544211 0 012221 0
Q ss_pred -------cc--CCCHHHHHHHhhh-cCce-eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 167 -------DI--HFAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 167 -------DI--HF~~~~Al~a~~~-~~ki-RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
|= .++|..+...++. .+++ ++.|.|=.. |+.. -+.|.++|+.++++++..+..+++.++.
T Consensus 109 ~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~----y~~N---~~~~~~~L~~l~~~~~~~l~~~~~~~~~-- 179 (287)
T cd01137 109 GHYKGKPDPHAWMSPKNAIIYVKNIAKALSEADPANAET----YQKN---AAAYKAKLKALDEWAKAKFATIPAEKRK-- 179 (287)
T ss_pred cccCCCCCCCcCcCHHHHHHHHHHHHHHHHHHCcccHHH----HHHH---HHHHHHHHHHHHHHHHHHHhcCCcccCE--
Confidence 22 2456666655554 3333 578877311 1111 2568899999999888877766554544
Q ss_pred EecCCCCCchhHHHhhCCChHHH----------HHHHHHHHHHHHHCCCCcEE
Q 005248 236 IGTNHGSLSDRIMSYYGDSPRGM----------VESAFEFARICRKLDFHNFL 278 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~eam----------VeSAle~~~i~e~~~f~~iv 278 (706)
+=+-|-++ ..+.++||=+..+. ...-.+.++.+++.+-.-|.
T Consensus 180 ~v~~H~af-~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 231 (287)
T cd01137 180 LVTSEGAF-SYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVF 231 (287)
T ss_pred EEEecccH-HHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 35677776 45677776321111 12223455566666665443
No 175
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=71.85 E-value=17 Score=38.62 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEEEecC-----CHHHHHHHHHHHHhhccCCcCcceeeccCCCHH---HHHHHhhhcCce
Q 005248 115 KDVAGTVEEVMRIADQGAD-LVRITVQ-----GKREADACFEIKNSLVQKNYNIPLVADIHFAPS---VALRVAECFDKI 185 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGce-iVRvtv~-----~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~---~Al~a~~~~~ki 185 (706)
.|.++.++=+.+|+++-.- =+||--| ..+.-+++.+|++.|+++|+++.||||=+-|-- .+...+++++=|
T Consensus 86 ~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmV 165 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMV 165 (248)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEE
Confidence 3889999999999876443 3788765 235678999999999999999999999888832 334556778999
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
-|-.=.+|.-. +..+-|..||++|+--=.|
T Consensus 166 QIKtPDLGgi~----------------------ntieAvlyCk~~gvgaY~G 195 (248)
T PF07476_consen 166 QIKTPDLGGIN----------------------NTIEAVLYCKEHGVGAYLG 195 (248)
T ss_dssp EE-GGGGSSTH----------------------HHHHHHHHHHHTT-EEEE-
T ss_pred EecCCCccchh----------------------hHHHHHHHHHhcCCceeec
Confidence 99888887743 3455688999999755443
No 176
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.69 E-value=61 Score=33.67 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC------CHHHHH--------------HHHHHHHhhccCCcCcceeeccCCCH--
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ------GKREAD--------------ACFEIKNSLVQKNYNIPLVADIHFAP-- 172 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~------~~~~A~--------------al~~I~~~L~~~g~~iPLVADIHF~~-- 172 (706)
-|.+.+.+.+++|+++|+|++=+-+| |-...+ ...++.+++++. +++|++-=.-+||
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHH
Confidence 36789999999999999999999944 322222 344555556654 3788543112253
Q ss_pred -----HHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCch
Q 005248 173 -----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (706)
Q Consensus 173 -----~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~ 245 (706)
+.+..++++ ++.+=|. | .-| |.+.++++.||++|+..=.-+|-.+-.+
T Consensus 90 ~~G~~~fi~~~~~aG~~giiip-----D------------l~~--------ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIP-----D------------LPP--------EEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEEC-----C------------CCH--------HHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 344456665 6655553 1 001 1466799999999987756676555433
No 177
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.56 E-value=38 Score=37.80 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=83.7
Q ss_pred cCCCCceEEEeccCCC---CC--CHHHHHHHHHHHHHcCCC-EEEEecCCH-----HHHHHHHHHHHhhccCCcCcceee
Q 005248 98 IGSEHPIRVQTMTTND---TK--DVAGTVEEVMRIADQGAD-LVRITVQGK-----READACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~---T~--Dv~atv~Qi~~L~~aGce-iVRvtv~~~-----~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
+|.+.+++|=- |.- -- |.+..++-+++|++.+-+ +.-+-=|=. ..-+.+.++++++++.|+.+|+++
T Consensus 189 ~G~~~~l~vDa--N~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~ 266 (369)
T cd03314 189 PGYHPILHIDV--YGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVA 266 (369)
T ss_pred cCCCCEEEEEc--CCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEe
Confidence 57777787754 311 02 666777777888876322 444553332 246888899988877889999999
Q ss_pred ccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 167 DIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 167 DIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
|=+. +..-+...++ +++-+.+.+...|.-. +...+.+.|..+|+++=+|-
T Consensus 267 dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt----------------------~a~kia~lA~a~Gi~~~~h~ 319 (369)
T cd03314 267 DEWCNTLEDIRDFADAGAAHMVQIKTPDLGGID----------------------NTIDAVLYCKEHGVGAYLGG 319 (369)
T ss_pred cCCcCCHHHHHHHHHhCCCCEEEecchhcCCHH----------------------HHHHHHHHHHHcCCcEEEeC
Confidence 9774 4555555554 5999999999998833 56789999999999998874
No 178
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.51 E-value=24 Score=36.65 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=44.2
Q ss_pred cCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 160 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 160 ~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
+++|+.+|=++ +..-+...++ +++-+.+-|...|.-. ...++++.|+++|+++=+
T Consensus 175 ~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 175 AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPR----------------------ALLELAEEARARGIPAVV 232 (263)
T ss_pred cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHH----------------------HHHHHHHHHHHcCCCEEE
Confidence 67999999554 2233333333 5899999999998743 678899999999999988
Q ss_pred ecCC
Q 005248 237 GTNH 240 (706)
Q Consensus 237 GvN~ 240 (706)
|..+
T Consensus 233 ~~~~ 236 (263)
T cd03320 233 SSAL 236 (263)
T ss_pred Ecch
Confidence 8543
No 179
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.50 E-value=6.9 Score=45.11 Aligned_cols=68 Identities=26% Similarity=0.393 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCEEEEec-------------CCHHHHHHHHHHHHh----hccCCcCcceeec--cCCCHHHHHHHh
Q 005248 119 GTVEEVMRIADQGADLVRITV-------------QGKREADACFEIKNS----LVQKNYNIPLVAD--IHFAPSVALRVA 179 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv-------------~~~~~A~al~~I~~~----L~~~g~~iPLVAD--IHF~~~~Al~a~ 179 (706)
.|.++.+.|.+||+|.|+|.. -+.....++.++.+. +++.|..+|+||| |++..+++.+=+
T Consensus 293 ~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla 372 (502)
T PRK07107 293 VDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA 372 (502)
T ss_pred cCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence 467889999999999997721 122345566666664 3445777999999 777777765433
Q ss_pred hhcCcee
Q 005248 180 ECFDKIR 186 (706)
Q Consensus 180 ~~~~kiR 186 (706)
-..+.|=
T Consensus 373 ~GA~~vm 379 (502)
T PRK07107 373 MGADFIM 379 (502)
T ss_pred cCCCeee
Confidence 2244443
No 180
>PRK00208 thiG thiazole synthase; Reviewed
Probab=70.63 E-value=24 Score=37.81 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=76.3
Q ss_pred CCCceEEEec--cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHH-----------------------HHh
Q 005248 100 SEHPIRVQTM--TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEI-----------------------KNS 154 (706)
Q Consensus 100 G~~PI~VQSM--t~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I-----------------------~~~ 154 (706)
+.+=|.+.=- ..|.-.|+..|++..++|.+-|.+.+=+.++|...|++|.+. .+.
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~ 169 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRI 169 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 4555555444 455568999999988888777777666666666666655432 222
Q ss_pred hccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH
Q 005248 155 LVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (706)
Q Consensus 155 L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake 229 (706)
+++. .++|+|+|-+.. |.-|..|++. ++.|=+|-+=...++ -..+-++|..-|++.+.
T Consensus 170 i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~d----------------P~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 170 IIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGD----------------PVAMARAFKLAVEAGRL 229 (250)
T ss_pred HHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCC----------------HHHHHHHHHHHHHHHHH
Confidence 3333 679999998876 8888889997 999999977653222 12455677777776655
No 181
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=70.62 E-value=1.4e+02 Score=34.57 Aligned_cols=147 Identities=10% Similarity=0.102 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeec-cCCCHHHHHHHhhhcCceeeCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAECFDKIRVNPG 190 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVAD-IHF~~~~Al~a~~~~~kiRINPG 190 (706)
...++.-++=+..|.++|.+.+=+..| +..+.+.++.|.+.+. +..+-..+. -.-+-+.|++|...++.-||+=-
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~al~r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVCGLARCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEEEEcCCCHHhHHHHHHhccccCCCEEEEE
Confidence 356677788888999999999999876 4678888988876533 122111111 11122444444332233343211
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e 270 (706)
.-.+..-. ...+..-.+.+-+...+.|+.||++|..++++.-.+|-.+ .+-+++.++.+.
T Consensus 97 ~~~S~~h~-------~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d-------------~~~l~~~~~~~~ 156 (494)
T TIGR00973 97 IATSPIHL-------EHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTE-------------IPFLARIVEAAI 156 (494)
T ss_pred EccCHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCC-------------HHHHHHHHHHHH
Confidence 11110000 0112222355566777899999999999988865444322 234455566666
Q ss_pred HCCCCcEEEEEecC
Q 005248 271 KLDFHNFLFSMKAS 284 (706)
Q Consensus 271 ~~~f~~iviS~KaS 284 (706)
+.|-+ .|++..+
T Consensus 157 ~~Ga~--~i~l~DT 168 (494)
T TIGR00973 157 NAGAT--TINIPDT 168 (494)
T ss_pred HcCCC--EEEeCCC
Confidence 66655 3445544
No 182
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=70.02 E-value=17 Score=36.66 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 120 TVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~~--A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
+.+|+..+.++|+++|=+-.+.... .+.+.++.+.+++. ..+|++++.| +..-+..+.+. ++-+-+|.+++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~-t~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS-TLEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC-CHHHHHHHHHcCCCEEEcCCcee
Confidence 4579999999999988776543100 02223333333333 6799999998 56666777665 88787776554
No 183
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=69.90 E-value=49 Score=34.49 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=58.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (706)
+|+..|+.+|-. ..|.++.++|.++|.+.+-.++ |-+|--.+ .++.|+. |.++|+++-+=+ =|+..-|+.
T Consensus 50 ~~~~~~v~~Qv~----~~d~e~mi~ea~~l~~~~~ni~-IKIP~T~~--Gl~A~~~-L~~~GI~vn~T~--vfs~~Qa~~ 119 (220)
T PRK12653 50 MGGQGRLFAQVM----ATTAEGMVNDARKLRSIIADIV-VKVPVTAE--GLAAIKM-LKAEGIPTLGTA--VYGAAQGLL 119 (220)
T ss_pred hCCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCEE-EEeCCCHH--HHHHHHH-HHHcCCCeeEEE--ecCHHHHHH
Confidence 456679999986 4789999999999999987754 77886655 3666653 666677655444 588899998
Q ss_pred Hhhh-cCcee
Q 005248 178 VAEC-FDKIR 186 (706)
Q Consensus 178 a~~~-~~kiR 186 (706)
|+++ ++=|-
T Consensus 120 Aa~aGa~yIs 129 (220)
T PRK12653 120 SALAGAEYVA 129 (220)
T ss_pred HHhcCCcEEE
Confidence 8875 54443
No 184
>PRK09875 putative hydrolase; Provisional
Probab=69.69 E-value=1.7e+02 Score=31.72 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=116.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHhhccCCcCcceeeccC--CC---H---------HH
Q 005248 111 TNDTKDVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVADIH--FA---P---------SV 174 (706)
Q Consensus 111 ~t~T~Dv~atv~Qi~~L~~aGce-iVRvtv~~~-~~A~al~~I~~~L~~~g~~iPLVADIH--F~---~---------~~ 174 (706)
+..-.|+++++++++++.++|.. ||-.|..++ ++++.|++|-++ +.+.+||=-= .+ | .+
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tgv~Iv~~TG~y~~~~~p~~~~~~~~e~l 101 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRE-----TGINVVACTGYYQDAFFPEHVATRSVQEL 101 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHH-----hCCcEEEcCcCCCCccCCHHHhcCCHHHH
Confidence 33457899999999999999875 888888887 889999999985 7788888622 22 1 22
Q ss_pred HHHHh----hhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHh
Q 005248 175 ALRVA----ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (706)
Q Consensus 175 Al~a~----~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~r 250 (706)
|...+ +.++.=-|-||-||.-. ...-..|++| ++-|+...+++++.|.||=+=+.+|.
T Consensus 102 a~~~i~ei~~Gi~gt~ikaGvIGeiG--~~~~~it~~E--------~kvl~Aaa~a~~~TG~pi~~Ht~~~~-------- 163 (292)
T PRK09875 102 AQEMVDEIEQGIDGTELKAGIIAEIG--SSEGKITPLE--------EKVFIAAALAHNQTGRPISTHTSFST-------- 163 (292)
T ss_pred HHHHHHHHHHhhccCCCcccEEEEEe--cCCCCCCHHH--------HHHHHHHHHHHHHHCCcEEEcCCCcc--------
Confidence 22222 13554446677664321 0100112221 45677778888999999855443322
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcc--cccccccCCCCCCchhh
Q 005248 251 YGDSPRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL--HLGVTEAGEGEDGRMKS 326 (706)
Q Consensus 251 ygdt~eamVeSAle~~~i~e~~~f--~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPL--HLGVTEAG~g~~G~IKS 326 (706)
-++|.++++++.|. ++++|+ -.|...-...++.++++ |+ |-= ++|-. --...+ +=
T Consensus 164 ----------~g~e~l~il~e~Gvd~~rvvi~--H~d~~~d~~~~~~l~~~----G~-~l~fD~~g~~-~~~pd~---~r 222 (292)
T PRK09875 164 ----------MGLEQLALLQAHGVDLSRVTVG--HCDLKDNLDNILKMIDL----GA-YVQFDTIGKN-SYYPDE---KR 222 (292)
T ss_pred ----------chHHHHHHHHHcCcCcceEEEe--CCCCCCCHHHHHHHHHc----CC-EEEeccCCCc-ccCCHH---HH
Confidence 35667889999999 777766 34333456667777765 22 222 22211 000111 22
Q ss_pred HHHHHHHhhcCCCceeEEe
Q 005248 327 AIGIGTLLQDGLGDTIRVS 345 (706)
Q Consensus 327 avGiG~LL~dGIGDTIRVS 345 (706)
.-.|-.|+..|-+|-|-+|
T Consensus 223 ~~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 223 IAMLHALRDRGLLNRVMLS 241 (292)
T ss_pred HHHHHHHHhcCCCCeEEEe
Confidence 5566677777877777776
No 185
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=69.52 E-value=13 Score=42.85 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcCcceeeccC-CCHHHHHHHhhh-cCc
Q 005248 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAEC-FDK 184 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv-~~------------~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~~-~~k 184 (706)
|.++.+.|++||+|.|++.+ |+ .....++.++.+.+++ .++|++||-. .++.-+.+|+.. ++.
T Consensus 292 t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~vIadGGi~~~~di~kAla~GA~~ 369 (495)
T PTZ00314 292 TADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE--RGVPCIADGGIKNSGDICKALALGADC 369 (495)
T ss_pred CHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence 45778889999999999753 21 1234555555554443 5599999866 445555555554 555
Q ss_pred eee
Q 005248 185 IRV 187 (706)
Q Consensus 185 iRI 187 (706)
|=+
T Consensus 370 Vm~ 372 (495)
T PTZ00314 370 VML 372 (495)
T ss_pred EEE
Confidence 543
No 186
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=69.40 E-value=21 Score=38.90 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcCce
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG----KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDKI 185 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~----~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~ki 185 (706)
.+.+..++++.+..++|..-+.+.+-. .++.+.+..||+. -|-+++|..|.|- +..-|+..++.++++
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~---~G~~~~l~vDan~~~~~~~A~~~~~~l~~~ 215 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREA---VGPDMRLMHDGAHWYSRADALRLGRALEEL 215 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHH---hCCCCeEEEECCCCcCHHHHHHHHHHhhhc
Confidence 377889999999999999999997632 4567788888874 3668999999975 456666666666654
No 187
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=69.23 E-value=31 Score=38.41 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhH
Q 005248 144 EADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (706)
Q Consensus 144 ~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f 220 (706)
+-+.+.+++++ +++||.+|=.+ +++-+...++ ++|-+++.|..+|.-. .+
T Consensus 249 d~~~~~~L~~~-----~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit----------------------~~ 301 (395)
T cd03323 249 GREGMAEFRRA-----TGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMR----------------------GS 301 (395)
T ss_pred CHHHHHHHHHh-----cCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHH----------------------HH
Confidence 44556666664 78999999443 4554555544 4999999999998733 67
Q ss_pred HHHHHHHHHcCCeEEEec
Q 005248 221 SPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 221 ~~vv~~ake~~~~IRIGv 238 (706)
.++.+.|+++|+++=++.
T Consensus 302 ~kia~~A~~~gi~~~~h~ 319 (395)
T cd03323 302 VRVAQVCETWGLGWGMHS 319 (395)
T ss_pred HHHHHHHHHcCCeEEEec
Confidence 789999999999985544
No 188
>PRK00915 2-isopropylmalate synthase; Validated
Probab=68.63 E-value=2.3e+02 Score=32.98 Aligned_cols=116 Identities=10% Similarity=0.112 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCC---CHHHHHHHhhhcCceeeC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHF---APSVALRVAECFDKIRVN 188 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF---~~~~Al~a~~~~~kiRIN 188 (706)
...++.-++=+..|.++|.+.+=+..| +.++.+.++.|.+.+ -+..+.|=.-- +-+.|++|...+..-||+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~----~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTV----KNSTVCGLARAVKKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhC----CCCEEEEEccCCHHHHHHHHHHhhcCCCCEEE
Confidence 345677778888899999999999876 578889998887753 22333332211 234444444333333333
Q ss_pred ---CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 189 ---PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 189 ---PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
|-+=-..+ .-+....+.+-+.+.+.|+.||++|.-++++.-.++-
T Consensus 98 i~~~~Sd~h~~----------~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r 145 (513)
T PRK00915 98 TFIATSPIHME----------YKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATR 145 (513)
T ss_pred EEECCcHHHHH----------HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 22111100 0112234455666778999999999999888765553
No 189
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=68.47 E-value=27 Score=37.93 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHc-CCCE-EEEecCC-H--HH------------------------HHHHHHHHHhhccCCcCcceee
Q 005248 116 DVAGTVEEVMRIADQ-GADL-VRITVQG-K--RE------------------------ADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 116 Dv~atv~Qi~~L~~a-Gcei-VRvtv~~-~--~~------------------------A~al~~I~~~L~~~g~~iPLVA 166 (706)
|.+..+++|..+.++ |-++ +|+-++. - ++ .+.+..+++ .+++||.+
T Consensus 158 ~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~-----~~~~pia~ 232 (352)
T cd03325 158 KVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAA-----RTTIPIAT 232 (352)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHH-----hCCCCEEe
Confidence 566777788887664 5554 6776554 1 11 222333333 47899999
Q ss_pred ccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC
Q 005248 167 DIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (706)
Q Consensus 167 DIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN 239 (706)
|=+. +++-+...++ +++-+++.|+-+|.-. ...++++.|+++|+++=++..
T Consensus 233 dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit----------------------~~~~~~~lA~~~gi~~~~h~~ 286 (352)
T cd03325 233 GERLFSRWDFKELLEDGAVDIIQPDISHAGGIT----------------------ELKKIAAMAEAYDVALAPHCP 286 (352)
T ss_pred cccccCHHHHHHHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCcEeccCC
Confidence 9764 6666666555 5999999999998733 567899999999999866543
No 190
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.45 E-value=42 Score=36.00 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=67.7
Q ss_pred cCCCCceEEEeccCCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHH-----------------------H
Q 005248 98 IGSEHPIRVQTMTTND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEI-----------------------K 152 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~--T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I-----------------------~ 152 (706)
++|.+=|.+.=....+ ..|...|++..++|.+-|.+.+=+.++|...|++|.+. -
T Consensus 88 ~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I 167 (248)
T cd04728 88 ALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNL 167 (248)
T ss_pred HhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHH
Confidence 3466666666665444 68999999998888777777777777777666665432 1
Q ss_pred HhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCC
Q 005248 153 NSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 153 ~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPGNi 192 (706)
+.+++. .++|+|+|-+.. |.-|..|++. ++.|=+|-+=.
T Consensus 168 ~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 168 RIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred HHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 233333 679999998776 7888888887 99999987755
No 191
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=68.44 E-value=18 Score=38.67 Aligned_cols=131 Identities=18% Similarity=0.304 Sum_probs=85.0
Q ss_pred eEEEc-eeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCC-----EEEEecC--------------CHHH-HHHH
Q 005248 90 TVMVG-NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGAD-----LVRITVQ--------------GKRE-ADAC 148 (706)
Q Consensus 90 ~V~VG-~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGce-----iVRvtv~--------------~~~~-A~al 148 (706)
.|.++ +|.+|++.|..|=. --..-.|.+.+.+=..+|.++|.+ ++|.-+- ..+. -+.+
T Consensus 2 ~v~~~~~i~~G~~~~l~via-GPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l 80 (270)
T PF00793_consen 2 RVTVKNDILIGKDKRLLVIA-GPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDIL 80 (270)
T ss_dssp -EEECCTEEETTTSSEEEEE-EESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHH
T ss_pred CccccCCeEecCCCceEEEE-ECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhH
Confidence 36777 89999998633211 112234778888888889888988 5565432 2344 8899
Q ss_pred HHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHH
Q 005248 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (706)
Q Consensus 149 ~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ak 228 (706)
.+|++. +.+|++.|+|-...... +++.+|=+-|-.=|.-+ ..+++.|-
T Consensus 81 ~~v~~~-----~glpv~tEv~~~~~~~~-~~d~vd~lqIgAr~~~n--------------------------~~ll~~as 128 (270)
T PF00793_consen 81 SEVKEG-----LGLPVATEVLDPEQAEY-VADLVDWLQIGARLMEN--------------------------QDLLEAAS 128 (270)
T ss_dssp HHHHHH-----HT-EEEEEESSGGGHHH-HHTTESEEEE-GGGTTC--------------------------HHHHHHHH
T ss_pred HHHHhh-----hCCeeeEEecCcccHHH-HHhcCcEEEECcchhcC--------------------------HHHHHHhc
Confidence 999995 78999999998655544 57788888876666533 34778888
Q ss_pred HcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHH
Q 005248 229 KYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 229 e~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle 264 (706)
..+.|| |+--|-- .++++|..+|-.
T Consensus 129 ~~~~pV--~~K~g~~---------~ai~~~~~Aae~ 153 (270)
T PF00793_consen 129 GTGKPV--GFKNGTF---------AAIDEWLAAAEK 153 (270)
T ss_dssp CTSSEE--EEEE-TT---------SHGGGHHHHHHH
T ss_pred cCCCeE--EeccCCc---------cCHHHHHHHHhh
Confidence 888888 5533321 345666665543
No 192
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=68.43 E-value=37 Score=36.61 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=44.3
Q ss_pred CcCcceeeccCC-CHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 159 NYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
.+++|+.+|=.+ ++.........++-|.|-|+..|.-. +...+++.|.++|+++=+|
T Consensus 207 ~~~~PIa~DEs~~~~~~~~~~~~~~d~i~ik~~k~GGi~----------------------~a~~i~~~A~~~gi~~~~~ 264 (322)
T PRK05105 207 ATGIAIAWDESLREPDFQFEAEPGVRAIVIKPTLTGSLE----------------------KCQELIEQAHALGLRAVIS 264 (322)
T ss_pred hCCCCEEECCCCCchhhhhhhcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCcEEEE
Confidence 368999999654 23332222335888999999999843 5678999999999999888
Q ss_pred cCC
Q 005248 238 TNH 240 (706)
Q Consensus 238 vN~ 240 (706)
.+.
T Consensus 265 ~~~ 267 (322)
T PRK05105 265 SSI 267 (322)
T ss_pred Cch
Confidence 433
No 193
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.29 E-value=29 Score=40.24 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCcee--eCCC
Q 005248 119 GTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPG 190 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~---~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiR--INPG 190 (706)
.+.+.+..|.++|+|++=|++..- ...+.+++||+.+ +-+++|+|=-=-++.-|..++++ +|-|+ |-||
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~---~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~G 316 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKY---GDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGG 316 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhC---CCCceEEeccccCHHHHHHHHHcCCCEEEECCCCC
Confidence 367889999999999998863222 2367788888752 12378888666778888888887 88877 5677
No 194
>PRK14057 epimerase; Provisional
Probab=68.23 E-value=47 Score=35.60 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcC-----cceeeccCCCHHH
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYN-----IPLVADIHFAPSV 174 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~-~~A~al~~I~~~L~~~g~~-----iPLVADIHF~~~~ 174 (706)
..|+-|.=|.+. --..|..++++||++|=+-+-.. .-.+.+..||+. |.. -++-|=+=+||.-
T Consensus 75 ~~p~DvHLMV~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~----G~k~~~~~~~~kaGlAlnP~T 143 (254)
T PRK14057 75 TFIKDVHLMVAD-------QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQ----TVPVIGGEMPVIRGISLCPAT 143 (254)
T ss_pred CCCeeEEeeeCC-------HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHc----CCCcccccccceeEEEECCCC
Confidence 357778878763 33467889999999887776532 234566667663 542 2233344455544
Q ss_pred HHHHhh----hcCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 175 ALRVAE----CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 175 Al~a~~----~~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
-++.++ .+|.|= +|||--|- +|.... -+|++++-+.-+++|..++|.|..| ++.+
T Consensus 144 p~e~i~~~l~~vD~VLvMtV~PGfgGQ---~Fi~~~-------------l~KI~~lr~~~~~~~~~~~IeVDGG-I~~~ 205 (254)
T PRK14057 144 PLDVIIPILSDVEVIQLLAVNPGYGSK---MRSSDL-------------HERVAQLLCLLGDKREGKIIVIDGS-LTQD 205 (254)
T ss_pred CHHHHHHHHHhCCEEEEEEECCCCCch---hccHHH-------------HHHHHHHHHHHHhcCCCceEEEECC-CCHH
Confidence 444433 466554 89998764 254222 3344556666678888899999544 5543
No 195
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=68.15 E-value=45 Score=34.95 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~~~kiRINPGNig 193 (706)
.|.+.++..+..|++.|-..+=||..+..+.++++.++++ ++ +=+=|=-=.|+.-+.+|+++=.+.=+-||==
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~-----~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~- 95 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKE-----FPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLN- 95 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHh-----CcccEEccccccCHHHHHHHHHcCCCEEECCCCC-
Confidence 5889999999999999999999999999999999999997 33 2233445678999999888755566778621
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCC
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~ 273 (706)
.++++.|.++|+|+=-|++ ||-. +-.+.++|
T Consensus 96 ---------------------------~ev~~~a~~~~ip~~PG~~--------------TptE--------i~~Ale~G 126 (211)
T COG0800 96 ---------------------------PEVAKAANRYGIPYIPGVA--------------TPTE--------IMAALELG 126 (211)
T ss_pred ---------------------------HHHHHHHHhCCCcccCCCC--------------CHHH--------HHHHHHcC
Confidence 3599999999999977773 4422 22345677
Q ss_pred CCcEE-EEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhHHHHHHHhhcCCCc
Q 005248 274 FHNFL-FSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGD 340 (706)
Q Consensus 274 f~~iv-iS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~dGIGD 340 (706)
++-++ |...++--..|+++.. -.|| |+=+-=.|.-..--++.-..+| .+.-|+|-
T Consensus 127 ~~~lK~FPa~~~Gg~~~~ka~~----------gP~~-~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs 182 (211)
T COG0800 127 ASALKFFPAEVVGGPAMLKALA----------GPFP-QVRFCPTGGVSLDNAADYLAAG-VVAVGLGS 182 (211)
T ss_pred hhheeecCccccCcHHHHHHHc----------CCCC-CCeEeecCCCCHHHHHHHHhCC-ceEEecCc
Confidence 77665 4666665566766521 2343 1211111222222667777777 77777764
No 196
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=67.63 E-value=2 Score=30.38 Aligned_cols=12 Identities=58% Similarity=1.376 Sum_probs=10.0
Q ss_pred eEeccCCCCccc
Q 005248 641 EYVSCPSCGRTL 652 (706)
Q Consensus 641 e~ISCPsCGRTl 652 (706)
+.+.||.|||+-
T Consensus 1 ~l~~C~~CgR~F 12 (25)
T PF13913_consen 1 ELVPCPICGRKF 12 (25)
T ss_pred CCCcCCCCCCEE
Confidence 357899999985
No 197
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=67.62 E-value=14 Score=41.84 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cC
Q 005248 119 GTVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv-~~------------~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~ 183 (706)
+|.++.+.|.++|+|.|++-. |+ .-...++..+.+.++ .+++|+|||-.+. +.-+.+|+.. ++
T Consensus 203 ~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~--~~~vpVIAdGGI~~~~Di~KALalGA~ 280 (404)
T PRK06843 203 VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCK--NTNICIIADGGIRFSGDVVKAIAAGAD 280 (404)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 567888889999999998752 11 124556666665433 3679999997664 4444455554 55
Q ss_pred ceee
Q 005248 184 KIRV 187 (706)
Q Consensus 184 kiRI 187 (706)
.|=+
T Consensus 281 aVmv 284 (404)
T PRK06843 281 SVMI 284 (404)
T ss_pred EEEE
Confidence 5543
No 198
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.44 E-value=40 Score=36.83 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=75.6
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (706)
+|.+..++|= .| -.-|.+..++=+++|.+.|...+==-+| .++.+.+..++++ +++|+.+|=++ +++-+.
T Consensus 160 ~G~~~~l~vD--aN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~~-----~~~pia~gE~~~~~~~~~ 230 (361)
T cd03322 160 FGFEFHLLHD--VH-HRLTPNQAARFGKDVEPYRLFWMEDPTP-AENQEAFRLIRQH-----TATPLAVGEVFNSIWDWQ 230 (361)
T ss_pred cCCCceEEEE--CC-CCCCHHHHHHHHHHhhhcCCCEEECCCC-cccHHHHHHHHhc-----CCCCEEeccCCcCHHHHH
Confidence 5666667662 12 2244555666666777777665542232 2345667777774 88999999775 566655
Q ss_pred HHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC
Q 005248 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (706)
Q Consensus 177 ~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN 239 (706)
..++ +++-+.+.|+-.|.-. .+.++.+.|+++|+++-++..
T Consensus 231 ~~i~~~a~di~~~d~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 231 NLIQERLIDYIRTTVSHAGGIT----------------------PARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeeeccCC
Confidence 5555 4999999999988733 677899999999999977643
No 199
>PRK02227 hypothetical protein; Provisional
Probab=67.23 E-value=35 Score=36.33 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=77.8
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHcCCCEEEEecCCHHH----HHHHHHHHHhhccCCcCcceeeccCCCH---------H
Q 005248 108 TMTTNDT-KDVAGTVEEVMRIADQGADLVRITVQGKRE----ADACFEIKNSLVQKNYNIPLVADIHFAP---------S 173 (706)
Q Consensus 108 SMt~t~T-~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~----A~al~~I~~~L~~~g~~iPLVADIHF~~---------~ 173 (706)
|.|--|- .+.......+...+.+|.|+|-|-....+. .+.+..+.+.++...-+..+||-...|+ .
T Consensus 56 SAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~ 135 (238)
T PRK02227 56 SATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLS 135 (238)
T ss_pred eeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHH
Confidence 4555442 344445566888999999999999864432 2445555555666666788886555553 3
Q ss_pred HHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 174 VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 174 ~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
+.-.+++. ++.+=|--.. -|+..-|+... .+.+..+|+.|+++|.-. |. .|||...
T Consensus 136 l~~~a~~aGf~g~MlDTa~-Kdg~~Lfd~l~-------------~~~L~~Fv~~ar~~Gl~~--gL-AGSL~~~ 192 (238)
T PRK02227 136 LPAIAADAGFDGAMLDTAI-KDGKSLFDHMD-------------EEELAEFVAEARSHGLMS--AL-AGSLKFE 192 (238)
T ss_pred HHHHHHHcCCCEEEEeccc-CCCcchHhhCC-------------HHHHHHHHHHHHHcccHh--Hh-cccCchh
Confidence 33344444 6666664332 23444466554 567889999999999876 55 8999654
No 200
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=67.21 E-value=98 Score=31.03 Aligned_cols=95 Identities=14% Similarity=0.214 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHhhccCCcCcceeec-cCCCHHHHHHHhhh-cCceeeCCC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAEC-FDKIRVNPG 190 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~---~A~al~~I~~~L~~~g~~iPLVAD-IHF~~~~Al~a~~~-~~kiRINPG 190 (706)
+...-++..++.+++|++-+|+.+-+.. .-+++..|++. +++|++.. +=.++..+..|.++ ++.|=+.==
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-----v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-----VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-----cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 3345677888899999999999754432 44677777774 57998853 22445456667676 777754211
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
.+. .+.++++++.|+.+|+..-+.+
T Consensus 104 ~~~-----------------------~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 104 ALD-----------------------DEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCC-----------------------HHHHHHHHHHHHHcCCeEEEEE
Confidence 121 1256778888899988887666
No 201
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=67.14 E-value=20 Score=40.16 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhH
Q 005248 145 ADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (706)
Q Consensus 145 A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f 220 (706)
-+.+.++++++ |.++||++|=.| +++-+..+++ +++-+.|-|..+|.-. ..
T Consensus 291 ~eg~~~L~~~~---g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGit----------------------e~ 345 (408)
T cd03313 291 WEGWAKLTAKL---GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLT----------------------ET 345 (408)
T ss_pred HHHHHHHHHhc---CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HH
Confidence 44555555542 458999999654 7888887776 4999999999999733 56
Q ss_pred HHHHHHHHHcCCeEEEe
Q 005248 221 SPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 221 ~~vv~~ake~~~~IRIG 237 (706)
.++++.|+++|+++=+|
T Consensus 346 ~~ia~lA~~~G~~~~~s 362 (408)
T cd03313 346 IEAIKLAKKNGYGVVVS 362 (408)
T ss_pred HHHHHHHHHcCCeEEcc
Confidence 77999999999987555
No 202
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=67.04 E-value=1.2e+02 Score=34.19 Aligned_cols=133 Identities=15% Similarity=0.252 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH-------HHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCce
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREA-------DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A-------~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ki 185 (706)
..++++.-++++++|.+.|..-|.++-++.-.- .+|.++-+.|.+ ......|
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~---------------------~~~~~~i 209 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD---------------------IPGLLRI 209 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh---------------------cCCccEE
Confidence 367789999999999999998888876553210 112222221100 0112234
Q ss_pred ee---CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCC-ChHHH
Q 005248 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD-SPRGM 258 (706)
Q Consensus 186 RI---NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygd-t~eam 258 (706)
|+ +|-++.+ ++++.-++.+ ..+=||+-|| |+++|++++- ..
T Consensus 210 r~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~l~lglQSg--sd~vLk~M~R~~~--- 257 (418)
T PRK14336 210 RFLTSHPKDISQ---------------------------KLIDAMAHLPKVCRSLSLPVQAG--DDTILAAMRRGYT--- 257 (418)
T ss_pred EEeccChhhcCH---------------------------HHHHHHHhcCccCCceecCCCcC--CHHHHHHhCCCCC---
Confidence 53 4544411 2334444432 3566777776 7999999873 22
Q ss_pred HHHHHHHHHHHHHC--CC---CcEEEEEecCChhHHHHHHHHHHH
Q 005248 259 VESAFEFARICRKL--DF---HNFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 259 VeSAle~~~i~e~~--~f---~~iviS~KaSnv~~~i~ayrlla~ 298 (706)
.+..++.++.+.+. |+ .++++-.---+..++-+.++.+.+
T Consensus 258 ~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~ 302 (418)
T PRK14336 258 NQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMAD 302 (418)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 45666777777776 66 367777665555555555555443
No 203
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=67.02 E-value=1.8e+02 Score=30.89 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC----------CHHHHHHHHHHHHhhccCCcCcceee----c--cCC-------C
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ----------GKREADACFEIKNSLVQKNYNIPLVA----D--IHF-------A 171 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~----------~~~~A~al~~I~~~L~~~g~~iPLVA----D--IHF-------~ 171 (706)
...+..++-+..|.++|.+.+=+..| +..+.+.++.|++. .-+.+|.+ + +.| .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~----~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA----MPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh----CCCCceehhcccccccCccCCCcHHH
Confidence 34566677788999999999999876 56677888888875 23455542 1 111 1
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC--CCCchhHH
Q 005248 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH--GSLSDRIM 248 (706)
Q Consensus 172 ~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~--GSL~~~il 248 (706)
......++++ ++-||| + .+... -+++.+.++.||++|.-++..+.- ++
T Consensus 94 ~~di~~~~~~g~~~iri----~-~~~~~------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~------ 144 (275)
T cd07937 94 ELFVEKAAKNGIDIFRI----F-DALND------------------VRNLEVAIKAVKKAGKHVEGAICYTGSP------ 144 (275)
T ss_pred HHHHHHHHHcCCCEEEE----e-ecCCh------------------HHHHHHHHHHHHHCCCeEEEEEEecCCC------
Confidence 1112244555 788887 1 11100 136778999999999988876632 21
Q ss_pred HhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCC----hhHHHHHHHHHHHh
Q 005248 249 SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN----PVVMVQAYRLLVAE 299 (706)
Q Consensus 249 ~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSn----v~~~i~ayrlla~~ 299 (706)
+ -+++-+ .+.++.+++.|.+. |+++-|. |..+-+-++.+.++
T Consensus 145 -~--~~~~~~----~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 145 -V--HTLEYY----VKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred -C--CCHHHH----HHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 1 234333 34566677788875 4666553 34444444444433
No 204
>PTZ00081 enolase; Provisional
Probab=66.16 E-value=23 Score=40.31 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhccCCcCcceeecc--CCCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHH
Q 005248 142 KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (706)
Q Consensus 142 ~~~A~al~~I~~~L~~~g~~iPLVADI--HF~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~ 217 (706)
.++-+.+.++++++ |-.+||++|= ..|++.+..+++ +++.+.|-|..+|.-.
T Consensus 308 ~~D~eg~~~Lt~~l---g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT--------------------- 363 (439)
T PTZ00081 308 QDDWEAYAKLTAAI---GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT--------------------- 363 (439)
T ss_pred cccHHHHHHHHHhh---CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH---------------------
Confidence 35678888888863 3479999994 467888888887 4999999999999733
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
...++++.|+++|+++=|+--+|.-++.
T Consensus 364 -e~l~~a~lA~~~Gi~~iishrsgETed~ 391 (439)
T PTZ00081 364 -EAIEAAKLAQKNGWGVMVSHRSGETEDT 391 (439)
T ss_pred -HHHHHHHHHHHcCCcEEEeCCCchhHHH
Confidence 4567999999999999888777665543
No 205
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.94 E-value=37 Score=36.73 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG---------KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFD 183 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~---------~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~ 183 (706)
.|.+..++++.++.+.|..-+.+-+.. .++.+.+..||+. -|-++.|..|-|- ++.-|+..++.++
T Consensus 119 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~---~g~~~~l~vDan~~~~~~~A~~~~~~l~ 195 (341)
T cd03327 119 TDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREA---VGYDVDLMLDCYMSWNLNYAIKMARALE 195 (341)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHH---hCCCCcEEEECCCCCCHHHHHHHHHHhh
Confidence 377888999999999999999998631 4677788888875 3667999999875 5666666666666
Q ss_pred ce
Q 005248 184 KI 185 (706)
Q Consensus 184 ki 185 (706)
.+
T Consensus 196 ~~ 197 (341)
T cd03327 196 KY 197 (341)
T ss_pred hc
Confidence 54
No 206
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.92 E-value=76 Score=32.80 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~ 194 (706)
.|.+..++.++.|.+.|...+=||..+....+++++++++.. ++-+=|=-=.++.-|..|+++=.+.=+-|+ + +
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~aGA~FivSP~-~-~ 86 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKAGSRFIVSPG-T-T 86 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-C
Confidence 478899999999999999999999999999999999998631 133334455778888888887556667885 3 2
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f 274 (706)
.+|++.|+++|++.==|+ -||- .+..+.++|+
T Consensus 87 --------------------------~~vi~~a~~~~i~~iPG~--------------~Tpt--------Ei~~A~~~Ga 118 (201)
T PRK06015 87 --------------------------QELLAAANDSDVPLLPGA--------------ATPS--------EVMALREEGY 118 (201)
T ss_pred --------------------------HHHHHHHHHcCCCEeCCC--------------CCHH--------HHHHHHHCCC
Confidence 359999999999985555 3553 3344677898
Q ss_pred CcEEEEEecCCh--hHHHHHH
Q 005248 275 HNFLFSMKASNP--VVMVQAY 293 (706)
Q Consensus 275 ~~iviS~KaSnv--~~~i~ay 293 (706)
+-++|== ++.. ...+++.
T Consensus 119 ~~vK~FP-a~~~GG~~yikal 138 (201)
T PRK06015 119 TVLKFFP-AEQAGGAAFLKAL 138 (201)
T ss_pred CEEEECC-chhhCCHHHHHHH
Confidence 8777754 3332 3455554
No 207
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.83 E-value=2 Score=45.38 Aligned_cols=16 Identities=56% Similarity=1.090 Sum_probs=14.4
Q ss_pred CceEeccCCCCccccc
Q 005248 639 KTEYVSCPSCGRTLFD 654 (706)
Q Consensus 639 kte~ISCPsCGRTlfD 654 (706)
+-+++-||.|||.||=
T Consensus 218 ~d~iv~CP~CgRILy~ 233 (239)
T COG1579 218 KDEIVFCPYCGRILYY 233 (239)
T ss_pred CCCCccCCccchHHHh
Confidence 7899999999999874
No 208
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=65.53 E-value=1.4e+02 Score=33.88 Aligned_cols=136 Identities=11% Similarity=0.198 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeC
Q 005248 116 DVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (706)
Q Consensus 116 Dv~atv~Qi~~L~~a---GceiVRvt----v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRIN 188 (706)
-+++-+++|....+. +..+-.|. +|+.-..+.+.+|.+.|++. .|+..|. +. .+..|
T Consensus 83 y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~-----------e~--tie~~ 146 (453)
T PRK13347 83 YVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDA---FDFAPEA-----------EI--AVEID 146 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHh---CCCCCCc-----------eE--EEEec
Confidence 467888888876654 24555665 45543344455555544331 1221111 11 25689
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHH
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~ 267 (706)
|..+-. +.++..++.|+- ||-+.-=|+++++++..+. .. .+.+++-++
T Consensus 147 p~~lt~---------------------------e~l~~L~~~G~~-rvsiGvQS~~~~vl~~l~R~~~---~~~~~~ai~ 195 (453)
T PRK13347 147 PRTVTA---------------------------EMLQALAALGFN-RASFGVQDFDPQVQKAINRIQP---EEMVARAVE 195 (453)
T ss_pred cccCCH---------------------------HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCC---HHHHHHHHH
Confidence 998822 367788888864 6666668899999999873 33 344556677
Q ss_pred HHHHCCCCcE----EEEEecCChhHHHHHHHHHHH
Q 005248 268 ICRKLDFHNF----LFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 268 i~e~~~f~~i----viS~KaSnv~~~i~ayrlla~ 298 (706)
.+++.||.+| ++-+---+...+.+..+.+.+
T Consensus 196 ~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 196 LLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA 230 (453)
T ss_pred HHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 7888999744 445556666666666555554
No 209
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=65.52 E-value=33 Score=31.88 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH----HHHHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~----~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
+.|+.+|-+.+......... .+.+.++|++.|=|-..... ..+.+..|++.+ -++|++..+|-+.....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~---a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~ 129 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIA---AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAA 129 (200)
T ss_pred CCcEEEEEccCCchhhhhHH---HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccch
Confidence 46999999988765444322 46788899999987766642 566777777752 16899999986654333
Q ss_pred H-Hhhh-cCceeeCCCCCCcc
Q 005248 177 R-VAEC-FDKIRVNPGNFADR 195 (706)
Q Consensus 177 ~-a~~~-~~kiRINPGNig~~ 195 (706)
. ..+. ++-|-+.+++.+..
T Consensus 130 ~~~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 130 AAAEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred hhHHHcCCCEEEEcCCcCCCC
Confidence 2 2344 89999999887653
No 210
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.31 E-value=28 Score=38.08 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCCEEEEe------------------------cCCHHH-------------HHHHHHHHHhhccCCcC
Q 005248 119 GTVEEVMRIADQGADLVRIT------------------------VQGKRE-------------ADACFEIKNSLVQKNYN 161 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvt------------------------v~~~~~-------------A~al~~I~~~L~~~g~~ 161 (706)
.|+.+..+-+++|+++||-| ..+..+ -+-|+++++. .+
T Consensus 129 ~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-----~~ 203 (293)
T PRK04180 129 RNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL-----GR 203 (293)
T ss_pred CCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-----CC
Confidence 45677788889999999999 332221 2334555553 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 162 iPLV--ADIHF-~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
+|+| |--+. +|.-|..+++. ++.|=+.-+=+...+- .-.-.+|.+.+.+.++ -.-|.+..+..|-+|. |
T Consensus 204 iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP-----~~~akafv~ai~~~~~-~~~~~~~s~~~~~~m~-g 276 (293)
T PRK04180 204 LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDP-----EKRARAIVEATTHYDD-PEVLAEVSKGLGEAMV-G 276 (293)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCH-----HHHHHHHHHHHHHcCC-HHHHHHHHcccccccC-C
Confidence 9998 77776 78777777776 8887765443322110 0012335555555544 5678889999999884 9
Q ss_pred cCCCCCch
Q 005248 238 TNHGSLSD 245 (706)
Q Consensus 238 vN~GSL~~ 245 (706)
.|-.+|++
T Consensus 277 ~~~~~~~~ 284 (293)
T PRK04180 277 IDIDELPP 284 (293)
T ss_pred CccccCCH
Confidence 99888854
No 211
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=65.08 E-value=71 Score=32.81 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhh
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~ 180 (706)
..||.+|-. ..|.+..++|.++|.+.+-. +=|-+|--. +.++.|++ |.+.| +++=+=-=|+..-|+.|++
T Consensus 51 ~~~v~~qv~----~~~~e~~i~~a~~l~~~~~~-~~iKIP~T~--~gl~ai~~-L~~~g--i~v~~T~V~s~~Qa~~Aa~ 120 (211)
T cd00956 51 DGPVSAQVV----STDAEGMVAEARKLASLGGN-VVVKIPVTE--DGLKAIKK-LSEEG--IKTNVTAIFSAAQALLAAK 120 (211)
T ss_pred CCCEEEEEE----eCCHHHHHHHHHHHHHhCCC-EEEEEcCcH--hHHHHHHH-HHHcC--CceeeEEecCHHHHHHHHH
Confidence 458999984 57899999999999998432 334444443 45555553 55566 4454555699999999999
Q ss_pred hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 181 ~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
+-..+ |.|- +|. .++ ...... +.++.+.+.++++|.+.+|=+
T Consensus 121 AGA~y-vsP~-vgR----~~~------~g~dg~----~~i~~i~~~~~~~~~~tkil~ 162 (211)
T cd00956 121 AGATY-VSPF-VGR----IDD------LGGDGM----ELIREIRTIFDNYGFDTKILA 162 (211)
T ss_pred cCCCE-EEEe-cCh----Hhh------cCCCHH----HHHHHHHHHHHHcCCCceEEe
Confidence 73344 5551 111 000 001122 355679999999998876643
No 212
>TIGR03586 PseI pseudaminic acid synthase.
Probab=64.95 E-value=2.3e+02 Score=31.42 Aligned_cols=137 Identities=12% Similarity=0.200 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH-----------------------------------HHHHHHHHhhccC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA-----------------------------------DACFEIKNSLVQK 158 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A-----------------------------------~al~~I~~~L~~~ 158 (706)
--|.+-..+=|...+++|||.|++-+-..+.- +.|.+.++
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~----- 87 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAK----- 87 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHH-----
Confidence 34777777788888999999998875443331 12333333
Q ss_pred CcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 159 NYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 159 g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
...++.++..+ +..-+....+. ++-+-|--||+-+ -+|++.+-+.|+||=+.
T Consensus 88 ~~Gi~~~stpf-d~~svd~l~~~~v~~~KI~S~~~~n--------------------------~~LL~~va~~gkPvils 140 (327)
T TIGR03586 88 ELGLTIFSSPF-DETAVDFLESLDVPAYKIASFEITD--------------------------LPLIRYVAKTGKPIIMS 140 (327)
T ss_pred HhCCcEEEccC-CHHHHHHHHHcCCCEEEECCccccC--------------------------HHHHHHHHhcCCcEEEE
Confidence 36688888875 44444445566 8888899888854 46899999999999776
Q ss_pred cCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEE-EEecCC-----hhHHHHHHHHHHHh
Q 005248 238 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF-SMKASN-----PVVMVQAYRLLVAE 299 (706)
Q Consensus 238 vN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ivi-S~KaSn-----v~~~i~ayrlla~~ 299 (706)
+--.++ .-++.|++++ ++.|-++|++ -| .|+ -..-+.+-..|.++
T Consensus 141 tG~~t~-------------~Ei~~Av~~i---~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~ 191 (327)
T TIGR03586 141 TGIATL-------------EEIQEAVEAC---REAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAER 191 (327)
T ss_pred CCCCCH-------------HHHHHHHHHH---HHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHH
Confidence 644333 4466777766 4677777776 22 222 22234555566666
No 213
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=64.84 E-value=1.2e+02 Score=33.12 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccC--CcCcce-eeccCCCHHHHHHHhhh-cCcee
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQK--NYNIPL-VADIHFAPSVALRVAEC-FDKIR 186 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~-----~~A~al~~I~~~L~~~--g~~iPL-VADIHF~~~~Al~a~~~-~~kiR 186 (706)
|.+.-+++++++.+.|+.-|=||..+. ..++.+.++.+.|++. ++.+-+ +.|+.-+..+...-.++ ++-+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~- 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVY- 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhh-
Confidence 677888999999999999998885432 1234455555555443 222322 33432233322221222 3322
Q ss_pred eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc--CCeEEEecCCCCCchhHHHhhCCChHHHHHHHHH
Q 005248 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 187 INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~--~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle 264 (706)
+.|+-...+-|. .+-.. .=.+++.++++.+++. |+++.-|+ |-=+|-|.+.++ +
T Consensus 171 --~hnlEt~~~l~~-~vrr~--------~t~e~~Le~l~~ak~~~pgi~~~Tgi---------IVGlGETeee~~----e 226 (302)
T TIGR00510 171 --NHNLETVERLTP-FVRPG--------ATYRWSLKLLERAKEYLPNLPTKSGI---------MVGLGETNEEIK----Q 226 (302)
T ss_pred --cccccchHHHHH-HhCCC--------CCHHHHHHHHHHHHHhCCCCeecceE---------EEECCCCHHHHH----H
Confidence 223311111010 00000 1123566788889998 66665555 222366765544 4
Q ss_pred HHHHHHHCCCCcEEEE-----------EecCChhHHHHHHHHHHHh
Q 005248 265 FARICRKLDFHNFLFS-----------MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 265 ~~~i~e~~~f~~iviS-----------~KaSnv~~~i~ayrlla~~ 299 (706)
.++.++++||+.+.|. |+.--.+..-+.|+.++..
T Consensus 227 tl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 227 TLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred HHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 6778889999888875 4444556667777777766
No 214
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=64.80 E-value=17 Score=41.06 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcCcceeecc--CCCHHHHHHHhhh-cC
Q 005248 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC-FD 183 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv-~~------------~~~A~al~~I~~~L~~~g~~iPLVADI--HF~~~~Al~a~~~-~~ 183 (706)
|.++.+.|.++|||.|+|.+ |+ ...+.++.++.+.++ .+++|++||- ++-..++ +|+.+ ++
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~--~~~vpviadGGi~~~~di~-kAla~GA~ 351 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAA--QSGIPVIADGGIRYSGDIV-KALAAGAD 351 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHH-HHHHcCCC
Confidence 45566678899999999874 22 234567777766544 3579999985 4444443 44443 54
Q ss_pred ceee
Q 005248 184 KIRV 187 (706)
Q Consensus 184 kiRI 187 (706)
.|=+
T Consensus 352 ~V~~ 355 (450)
T TIGR01302 352 AVML 355 (450)
T ss_pred EEEE
Confidence 4433
No 215
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=64.37 E-value=34 Score=36.41 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 144 ~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
..+-|+.+.++|...|+.|-|-.| =|+.--..|++. ++-|=+--|-|++-. |++-+++.++.-+++..
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Ya~~~---------~~~~~~~~~~el~rl~~ 177 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPYADAH---------DAAEQARADAELERLAK 177 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccccccC---------ChHHHHHHHHHHHHHHH
Confidence 356778888888899999999999 455555556665 999999999998833 32323333333334444
Q ss_pred HHHHHHHcCCeEEEecCCC
Q 005248 223 LVEKCKKYGRAVRIGTNHG 241 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~G 241 (706)
-.+.|.+.|. .||.|
T Consensus 178 ~a~~A~~lGL----~VnAG 192 (243)
T COG0854 178 AAKLAAELGL----KVNAG 192 (243)
T ss_pred HHHHHHHcCc----eEecC
Confidence 7788888886 45666
No 216
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.33 E-value=79 Score=34.54 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHhhccCCcCcceeeccCCC--HHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHH
Q 005248 146 DACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (706)
Q Consensus 146 ~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~ 221 (706)
+.+.+|++ .+++|+.+|=++. +.-+...++ ++|-|.+.|+..|.-. ...
T Consensus 230 ~~~~~l~~-----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit----------------------~~~ 282 (368)
T cd03329 230 SSYRWLAE-----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT----------------------GAM 282 (368)
T ss_pred HHHHHHHh-----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHH----------------------HHH
Confidence 44555655 3789999998753 454444443 5999999999998733 567
Q ss_pred HHHHHHHHcCCeEEEe
Q 005248 222 PLVEKCKKYGRAVRIG 237 (706)
Q Consensus 222 ~vv~~ake~~~~IRIG 237 (706)
++.+.|.++|+++=++
T Consensus 283 ~ia~~a~~~gi~~~~h 298 (368)
T cd03329 283 KTAHLAEAFGLDVELH 298 (368)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8999999999998653
No 217
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=64.17 E-value=52 Score=37.09 Aligned_cols=72 Identities=11% Similarity=0.263 Sum_probs=49.5
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcE----EEEEecCChhHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNF----LFSMKASNPVVMVQAYRLLV 297 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~i----viS~KaSnv~~~i~ayrlla 297 (706)
+++..|+.|+ .||-+.-=|+++++++.++- .. .+.+.+.++.+.+.||.++ ++-+---+...+.+..+.+.
T Consensus 153 ~l~~lk~~G~-~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~ 228 (455)
T TIGR00538 153 VIDALRDEGF-NRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVA 228 (455)
T ss_pred HHHHHHHcCC-CEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHH
Confidence 5677777774 47777777899999999873 22 3556777888999999744 44455556666666665554
Q ss_pred H
Q 005248 298 A 298 (706)
Q Consensus 298 ~ 298 (706)
+
T Consensus 229 ~ 229 (455)
T TIGR00538 229 E 229 (455)
T ss_pred h
Confidence 4
No 218
>PRK07094 biotin synthase; Provisional
Probab=64.12 E-value=2e+02 Score=30.56 Aligned_cols=133 Identities=10% Similarity=0.112 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNi 192 (706)
.+.+..++.++.+.+.|..-|-++.-+ .-.-+.+.+|.+.+++. .++ .+.+++|..
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l---------------------~i~~~~g~~ 127 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDV---------------------AITLSLGER 127 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCc---------------------eEEEecCCC
Confidence 367888888888899999888886321 11223444444444432 112 133455432
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHC
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~ 272 (706)
- .+.++..|+.|.- |+-++.=|.+++++++++.. .-.+..++.++.+.+.
T Consensus 128 ~---------------------------~e~l~~Lk~aG~~-~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~ 177 (323)
T PRK07094 128 S---------------------------YEEYKAWKEAGAD-RYLLRHETADKELYAKLHPG--MSFENRIACLKDLKEL 177 (323)
T ss_pred C---------------------------HHHHHHHHHcCCC-EEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHc
Confidence 1 1245666777754 56677778889999998742 3356777888899999
Q ss_pred CC---CcEEEEEecCChhHHHHHHHHHHHh
Q 005248 273 DF---HNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 273 ~f---~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
|+ -.+++-+---+..+..+..+.+.+.
T Consensus 178 Gi~v~~~~iiGlpget~ed~~~~l~~l~~l 207 (323)
T PRK07094 178 GYEVGSGFMVGLPGQTLEDLADDILFLKEL 207 (323)
T ss_pred CCeecceEEEECCCCCHHHHHHHHHHHHhC
Confidence 98 5666666445556677766666643
No 219
>PRK07534 methionine synthase I; Validated
Probab=63.80 E-value=34 Score=37.54 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcc
Q 005248 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADR 195 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~ 195 (706)
.+.--.|+..|.++|+|++=+ |.|+.++++++-+..+. ..+|++.=+-|+ +-|.+-++
T Consensus 130 ~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~-----~~~Pv~vSft~~----------------~~g~l~~G 188 (336)
T PRK07534 130 VEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKL-----AGMPWCGTMSFD----------------TAGRTMMG 188 (336)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHH-----cCCeEEEEEEEC----------------CCCeeCCC
Confidence 344458999999999999999 79999999988777664 468888655442 11344443
Q ss_pred hhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC-CeEEEecCCCC
Q 005248 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTNHGS 242 (706)
Q Consensus 196 ~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~-~~IRIGvN~GS 242 (706)
. .+..+++..++.+ .+.=||+|.++
T Consensus 189 ~----------------------~~~~~~~~~~~~~~~~~avGvNC~~ 214 (336)
T PRK07534 189 L----------------------TPADLADLVEKLGEPPLAFGANCGV 214 (336)
T ss_pred C----------------------cHHHHHHHHHhcCCCceEEEecCCC
Confidence 3 3455666665554 34678999986
No 220
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=63.55 E-value=1.2e+02 Score=31.67 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeecc--CCCH-----H-----HHHHHhh
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI--HFAP-----S-----VALRVAE 180 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADI--HF~~-----~-----~Al~a~~ 180 (706)
.-.|++..++++ .+.|++-|=++ |..-.. ..+ + .+.++||+.-+ +|.. . .+.+|++
T Consensus 34 ~~~~~~~~~~~a---~~~~~~~v~~~-p~~~~~--~~~----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~ 101 (258)
T TIGR01949 34 GLVDIRKTVNEV---AEGGADAVLLH-KGIVRR--GHR----G--YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR 101 (258)
T ss_pred CcCCHHHHHHHH---HhcCCCEEEeC-cchhhh--ccc----c--cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH
Confidence 445677666554 45577777555 332111 111 1 13567777776 7754 1 1446666
Q ss_pred h-cC--ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChH
Q 005248 181 C-FD--KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPR 256 (706)
Q Consensus 181 ~-~~--kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~e 256 (706)
. ++ .+|+|.|.-.. . +.+ +.+..+.+.|.++|+|+-|-+. . .|. .+.
T Consensus 102 ~Ga~~v~~~~~~g~~~~------------~------~~~-~~~~~i~~~~~~~g~~liv~~~----~------~Gvh~~~ 152 (258)
T TIGR01949 102 MGADAVSIHVNVGSDTE------------W------EQI-RDLGMIAEICDDWGVPLLAMMY----P------RGPHIDD 152 (258)
T ss_pred CCCCEEEEEEecCCchH------------H------HHH-HHHHHHHHHHHHcCCCEEEEEe----c------cCccccc
Confidence 4 54 78999885211 1 122 3567789999999999988221 0 010 010
Q ss_pred HHHHHHHHH-HHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 257 GMVESAFEF-ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 257 amVeSAle~-~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
+-...+++ ++++.+.|-+=|.+|.|. -++..+.+++.
T Consensus 153 -~~~~~~~~~~~~a~~~GADyikt~~~~-----~~~~l~~~~~~ 190 (258)
T TIGR01949 153 -RDPELVAHAARLGAELGADIVKTPYTG-----DIDSFRDVVKG 190 (258)
T ss_pred -ccHHHHHHHHHHHHHHCCCEEeccCCC-----CHHHHHHHHHh
Confidence 11122333 588889999999988652 25556666655
No 221
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=63.49 E-value=86 Score=32.01 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCC---EEEEecCC---HHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 005248 119 GTVEEVMRIADQGAD---LVRITVQG---KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (706)
Q Consensus 119 atv~Qi~~L~~aGce---iVRvtv~~---~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPG 190 (706)
..++-++++.++|++ ++=++... ....+.+++|++. .++|++++--.. ..-+..+.+. ++.+=+|=+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-----VFIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 445667778899999 66555322 2234556666664 678998885544 4555555554 788877766
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC--C-----CCCchhHHHhhCCChHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--H-----GSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN--~-----GSL~~~il~rygdt~eamVeSAl 263 (706)
.+.+++ .+..+++.+.... |-+.++ + |++.-+ -+. +.--+++.
T Consensus 103 ~~~~p~----------------------~~~~i~~~~~~~~--i~~~ld~k~~~~~~~~v~~~----~~~--~~~~~~~~ 152 (243)
T cd04731 103 AVENPE----------------------LIREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTH----GGR--KPTGLDAV 152 (243)
T ss_pred hhhChH----------------------HHHHHHHHcCCCC--EEEEEEeeecCCCceEEEEc----CCc--eecCCCHH
Confidence 664432 3444444432211 333332 1 222211 110 01123457
Q ss_pred HHHHHHHHCCCCcEEEEEecCChh---HHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhHHHHHHHhhc
Q 005248 264 EFARICRKLDFHNFLFSMKASNPV---VMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 336 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS~KaSnv~---~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~d 336 (706)
++++.+++.|++.|+++--..+.. .-.+.++.+.+. .+.|+ --.|-|.|.--+-.+|..
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-----~~~pv---------ia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-----VNIPV---------IASGGAGKPEHFVEAFEE 214 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCCE---------EEeCCCCCHHHHHHHHHh
Confidence 888999999999999976443211 012333444443 45665 235667777777777765
No 222
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=63.33 E-value=28 Score=40.01 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=53.7
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCC----cEEEEEecCChhHHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH----NFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~----~iviS~KaSnv~~~i~ayrlla~ 298 (706)
.++..|+.|+- ||-+|-=|.++++++..|-. .-++.+.+.++.+.+.||. |+++-+---+...+.+..+.+.+
T Consensus 271 ~L~~Lk~~Gv~-RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~ 347 (488)
T PRK08207 271 KLEVLKKYGVD-RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEK 347 (488)
T ss_pred HHHHHHhcCCC-eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 57788889976 99999999999999999842 2345667778899999997 45555555556666666555544
No 223
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=63.32 E-value=50 Score=35.82 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHH
Q 005248 145 ADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (706)
Q Consensus 145 A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~ 221 (706)
.+.+.+++++ +.+|+.+|=++. ..-....++ +++-+.+.|...|.-. .+.
T Consensus 228 ~~~~~~l~~~-----~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit----------------------~~~ 280 (365)
T cd03318 228 LDGLARLRSR-----NRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLR----------------------RAQ 280 (365)
T ss_pred HHHHHHHHhh-----cCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHH----------------------HHH
Confidence 4455555553 889999997754 444444444 4899999999998733 678
Q ss_pred HHHHHHHHcCCeEEEe
Q 005248 222 PLVEKCKKYGRAVRIG 237 (706)
Q Consensus 222 ~vv~~ake~~~~IRIG 237 (706)
+++..|+++|+++=+|
T Consensus 281 ~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 281 KVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHcCCceeec
Confidence 8999999999997555
No 224
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=63.32 E-value=1.9e+02 Score=29.98 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhh
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~-A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~ 180 (706)
-|+-|.=|++. - -..+..++++||+++=+-+-.... .+.+..||+ .|+..=|.=.=+-.......-++
T Consensus 59 ~~~dvHLMv~~----p---~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~----~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 59 APIDVHLMVKP----V---DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKE----HGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred CCEEEEeccCC----H---HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHH
Confidence 46777778753 2 345678899999998887663322 355556665 47765554444443344444444
Q ss_pred hcCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHH
Q 005248 181 CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 181 ~~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
.+|.|= +|||-=|- +|.... ++ +++++.+..+++|.-+.|-| -|.++.+
T Consensus 128 ~~D~vlvMtV~PGfgGq---~fi~~~---------le----kI~~l~~~~~~~~~~~~I~v-dGGI~~e----------- 179 (220)
T PRK08883 128 KVDLILLMSVNPGFGGQ---SFIPHT---------LD----KLRAVRKMIDESGRDIRLEI-DGGVKVD----------- 179 (220)
T ss_pred hCCeEEEEEecCCCCCc---eecHhH---------HH----HHHHHHHHHHhcCCCeeEEE-ECCCCHH-----------
Confidence 566554 79986543 244222 23 44456666667787788887 5556543
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHH
Q 005248 258 MVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLL 296 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrll 296 (706)
.++.|.+.|-+-+++. .|+.|+...++.+|..
T Consensus 180 -------ni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 180 -------NIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAE 214 (220)
T ss_pred -------HHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 3344444555444432 2455666666666543
No 225
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=63.32 E-value=62 Score=34.03 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=82.5
Q ss_pred HHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhh
Q 005248 173 SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY 251 (706)
Q Consensus 173 ~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ry 251 (706)
..+..|+++ .+=+=.+||-+.+.. -...+.+.|+++|+.+.| -+|.+
T Consensus 76 e~~~~aL~aGk~Vvi~s~~Al~d~~----------------------~~~~L~~~A~~~g~~l~v--~sga~-------- 123 (265)
T PRK13303 76 EHVVPILKAGIDCAVISVGALADEA----------------------LRERLEQAAEAGGARLHL--LSGAI-------- 123 (265)
T ss_pred HHHHHHHHcCCCEEEeChHHhcCHH----------------------HHHHHHHHHHHCCCEEEE--eChHh--------
Confidence 566677776 666667888775522 335688899999998877 22222
Q ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH-HHHhhhcCCCCCcccccccccCCCCCCchhhHHHH
Q 005248 252 GDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL-LVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330 (706)
Q Consensus 252 gdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrl-la~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavGi 330 (706)
-+++.++..+..+++.+.+ +..+++. ++|. .++ .+.| .. .+||.-.-+.|..+-+++.
T Consensus 124 ---------gg~d~l~~~~~g~~~~v~~--~~~k~p~---~~~~~~~~----~~~d-l~--~~~~~~~~f~G~a~ea~~~ 182 (265)
T PRK13303 124 ---------GGIDALAAAKEGGLDEVTY--TGRKPPK---SWRGTPAE----QLCD-LD--ALTEPTVIFEGSAREAARL 182 (265)
T ss_pred ---------hCHHHHHHHHhCCceEEEE--EEecChh---HhCcChhH----hccc-cc--ccccCeEEEEeCHHHHHHH
Confidence 2266677777788887766 4454443 2321 111 1344 22 4788888888888888775
Q ss_pred --------HHHhhcCCC-ceeEEecCCCC
Q 005248 331 --------GTLLQDGLG-DTIRVSLTEPP 350 (706)
Q Consensus 331 --------G~LL~dGIG-DTIRVSLT~dP 350 (706)
.++-.-||| |-.+|.|-.||
T Consensus 183 ~p~n~nvaaa~~la~~g~d~~~v~~~adp 211 (265)
T PRK13303 183 FPKNANVAATVALAGLGLDRTRVELIADP 211 (265)
T ss_pred CCchhhHHHHHHHhccCccceEEEEEECC
Confidence 344458888 88899999999
No 226
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=63.20 E-value=59 Score=34.88 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=45.0
Q ss_pred CcCcceeeccCCC-HHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 159 NYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 159 g~~iPLVADIHF~-~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+++|+.+|=.+. +.-+...++ +++-|.|-|...|.-. .+..+++.|..+|+++=
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~----------------------~~~~i~~~a~~~gi~~~ 261 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPA----------------------KLRDLAQKAHRLGLQAV 261 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHH----------------------HHHHHHHHHHHcCCCEE
Confidence 3679999997643 443444444 3788999999998843 57889999999999998
Q ss_pred EecC
Q 005248 236 IGTN 239 (706)
Q Consensus 236 IGvN 239 (706)
+|-.
T Consensus 262 ~~~~ 265 (307)
T TIGR01927 262 FSSV 265 (307)
T ss_pred EECc
Confidence 8843
No 227
>PRK01060 endonuclease IV; Provisional
Probab=63.19 E-value=1.9e+02 Score=29.81 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=58.5
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcCcc-eeeccCCCHHHHHHHh
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVA 179 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~-------~~A~al~~I~~~L~~~g~~iP-LVADIHF~~~~Al~a~ 179 (706)
+||++. .|++.+ +..++++|.+-|=+.+.+. -..+.+.++|+.+.+.|+.+. ++. |-.+
T Consensus 6 ~~~~~~-~~~~~~---l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~--h~~~------- 72 (281)
T PRK01060 6 AHVSAA-GGLEGA---VAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILV--HAPY------- 72 (281)
T ss_pred EeeecC-CCHHHH---HHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEE--ecce-------
Confidence 344432 345544 4667778999997765322 234457778888878787753 332 3211
Q ss_pred hhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC
Q 005248 180 ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 180 ~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS 242 (706)
+.|+++.+. +..++-.+.++..++.|++.|.+ .|.+..|.
T Consensus 73 ---------~~nl~~~d~-------------~~r~~s~~~~~~~i~~A~~lga~-~vv~h~G~ 112 (281)
T PRK01060 73 ---------LINLGNPNK-------------EILEKSRDFLIQEIERCAALGAK-LLVFHPGS 112 (281)
T ss_pred ---------EecCCCCCH-------------HHHHHHHHHHHHHHHHHHHcCCC-EEEEcCCc
Confidence 244444321 12333345677799999999998 46666665
No 228
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=62.97 E-value=2.4e+02 Score=31.50 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=82.2
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHH--cCCCEEEEecCCH------HHHHHHHHHHHhhccCCcCc-ceeeccCCCHHHHH
Q 005248 106 VQTMTTNDTKDVAGTVEEVMRIAD--QGADLVRITVQGK------READACFEIKNSLVQKNYNI-PLVADIHFAPSVAL 176 (706)
Q Consensus 106 VQSMt~t~T~Dv~atv~Qi~~L~~--aGceiVRvtv~~~------~~A~al~~I~~~L~~~g~~i-PLVADIHF~~~~Al 176 (706)
+.=|-||.-.-+..-.-.+.+|++ .|.+.|.+-|-+. +-.+.++. .+.|.++|+.+ |.++| |+..|.
T Consensus 137 ~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~a-a~~L~~~Gf~v~~yc~~---d~~~a~ 212 (326)
T PRK11840 137 YTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKA-TEILVKEGFQVMVYCSD---DPIAAK 212 (326)
T ss_pred CEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHH-HHHHHHCCCEEEEEeCC---CHHHHH
Confidence 444556554332222222333332 2678887765442 11222222 22355568887 88887 556665
Q ss_pred HHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCCh
Q 005248 177 RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (706)
Q Consensus 177 ~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ 255 (706)
..++. +..|.-=|-=||.+..- ++. +.++.+++. .++|+-+|.--|+ |
T Consensus 213 ~l~~~g~~avmPl~~pIGsg~gv------~~p----------~~i~~~~e~---~~vpVivdAGIg~------------~ 261 (326)
T PRK11840 213 RLEDAGAVAVMPLGAPIGSGLGI------QNP----------YTIRLIVEG---ATVPVLVDAGVGT------------A 261 (326)
T ss_pred HHHhcCCEEEeeccccccCCCCC------CCH----------HHHHHHHHc---CCCcEEEeCCCCC------------H
Confidence 55554 43333334456765431 122 233334444 4688888864443 3
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHh
Q 005248 256 RGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 256 eamVeSAle~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla~~ 299 (706)
+.+..+-++|++-+.+- +||.||..|-+|+++-++-
T Consensus 262 --------sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 262 --------SDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred --------HHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 24555667899765432 5999999999999986553
No 229
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=62.77 E-value=57 Score=30.52 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHc-----CCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 005248 219 VFSPLVEKCKKY-----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (706)
Q Consensus 219 ~f~~vv~~ake~-----~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~ 288 (706)
.+.++++.+++. +..+.+.+|.+.++++ .++.+.+.|++.+.||+.+.|...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~------------------~~~~l~~~~~~~i~isl~~~~~~~ 125 (216)
T smart00729 69 QLEELLEAIREILGLADDVEITIETRPGTLTEE------------------LLEALKEAGVNRVSLGVQSGSDEV 125 (216)
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHH------------------HHHHHHHcCCCeEEEecccCCHHH
Confidence 456677777776 5678899997777654 556677889989999999987653
No 230
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.66 E-value=13 Score=39.56 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred cCCCCceEEEeccCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCH---------------------------HHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDT--KDVAGTVEEVMRIADQGADLVRITVQGK---------------------------READAC 148 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aGceiVRvtv~~~---------------------------~~A~al 148 (706)
++|.+=|.+.=-....| -|...|++-.+.|.+-|.++.=.+.+|. ..-.+|
T Consensus 88 ~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 88 AFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp TTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH
T ss_pred HcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH
Confidence 44666666666655555 7888888776666555555555544444 344667
Q ss_pred HHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 005248 149 FEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (706)
Q Consensus 149 ~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPG 190 (706)
+.|+++ +++|+|-|---- |.=|-.|+|. +|.|=+|-.
T Consensus 168 ~~i~~~-----~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 168 RIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp HHHHHH-----GSSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHh-----cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 788886 689999996543 6667788886 999999864
No 231
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=62.49 E-value=1.7e+02 Score=29.24 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHhhccCCcCcceeeccCCC-----HHHH-HHHhhh-cC
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADIHFA-----PSVA-LRVAEC-FD 183 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~--~A~al~~I~~~L~~~g~~iPLVADIHF~-----~~~A-l~a~~~-~~ 183 (706)
|..|.+..++=+.++.+.- .+|-+-+|=.. -.+-++.||+ . .++++|+|+. +... ..+++. +|
T Consensus 11 D~~~~~~~~~~~~~~~~~~-~~vk~g~~l~~~~G~~~v~~ir~----~---~~i~~D~k~~di~~~~~~~~~~~~~~gad 82 (215)
T PRK13813 11 DVTDRERALKIAEELDDYV-DAIKVGWPLVLASGLGIIEELKR----Y---APVIADLKVADIPNTNRLICEAVFEAGAW 82 (215)
T ss_pred CCCCHHHHHHHHHhccccC-CEEEEcHHHHHhhCHHHHHHHHh----c---CCEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 5666665555444443322 24444333221 1233444444 2 2788899984 2333 345554 66
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAl 263 (706)
-|=+.+- .|. +.+.++++.|+++|++.=+-+|..+.+ -++.| .+-..
T Consensus 83 ~vtvh~e-~g~-----------------------~~l~~~i~~~~~~g~~~~v~~~~~~~~--~~~~~-------~~~~~ 129 (215)
T PRK13813 83 GIIVHGF-TGR-----------------------DSLKAVVEAAAESGGKVFVVVEMSHPG--ALEFI-------QPHAD 129 (215)
T ss_pred EEEEcCc-CCH-----------------------HHHHHHHHHHHhcCCeEEEEEeCCCCC--CCCCH-------HHHHH
Confidence 6666653 221 146779999999998764444553311 11111 13345
Q ss_pred HHHHHHHHCCCCcEEEE
Q 005248 264 EFARICRKLDFHNFLFS 280 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS 280 (706)
..++++.+.||.-.+++
T Consensus 130 ~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 130 KLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHhCCCeEEEC
Confidence 56778999999877654
No 232
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=62.28 E-value=23 Score=37.61 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 144 ~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
..+.|+.+.++|++.|+.+-|--|= ++.-...|.+. ++.|=+.-|.|++. | ++++-.+||++|.+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a---~-----~~~~~~~el~~i~~---- 173 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANA---Y-----NKKEMAEELQRIVK---- 173 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcC---C-----CchhHHHHHHHHHH----
Confidence 4567888888888899998888553 34444556665 99999999999873 2 22333456666555
Q ss_pred HHHHHHHcCCeEEEecCCCC
Q 005248 223 LVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GS 242 (706)
-.+.|++.| ++||.|-
T Consensus 174 aa~~A~~lG----L~VnAGH 189 (237)
T TIGR00559 174 ASVHAHSLG----LKVNAGH 189 (237)
T ss_pred HHHHHHHcC----CEEecCC
Confidence 677788877 4778773
No 233
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.25 E-value=16 Score=38.67 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~ 287 (706)
+.+++.++.|++||+++=-| |.|-+..+.+ .+.-++++.|+++||+-|-||-=+-+.+
T Consensus 41 ~~l~eki~la~~~~V~v~~G---Gtl~E~~~~q---------~~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKVYPG---GTLFEIAHSK---------GKFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred HHHHHHHHHHHHcCCeEeCC---ccHHHHHHHh---------hhHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 35778999999999999766 6554443322 2344699999999999999997766644
No 234
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=61.96 E-value=44 Score=36.47 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVA 298 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~----KaSnv~~~i~ayrlla~ 298 (706)
.++..|+.|+. ||-+.-=|.++++++.+|-... .+.+++.++.+.+.||.++.+.+ .--+...+.+..+.+.+
T Consensus 102 ~l~~l~~~G~~-rvsiGvqS~~~~~l~~l~r~~~--~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (377)
T PRK08599 102 KLQVLKDSGVN-RISLGVQTFNDELLKKIGRTHN--EEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALA 178 (377)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC--HHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHc
Confidence 56777777853 7777778889999999874211 46788889999999997655443 55555666666665543
Q ss_pred hhhcCCC-CCcccccccccCCCC
Q 005248 299 EMYVHGW-DYPLHLGVTEAGEGE 320 (706)
Q Consensus 299 ~~~~eg~-~YPLHLGVTEAG~g~ 320 (706)
. .-... -|||.+ +.|+..
T Consensus 179 l-~~~~i~~y~l~~---~pgT~~ 197 (377)
T PRK08599 179 L-DIPHYSAYSLIL---EPKTVF 197 (377)
T ss_pred c-CCCEEeeeceee---cCCChh
Confidence 2 11111 266654 455443
No 235
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=61.81 E-value=3e+02 Score=32.34 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGN 191 (706)
.-.++.-++=++.|.++|.+++=+..| +.+++++++.|.+.+...+ +..+ ..+| |
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~-------~~~~---------------~l~~-~ 158 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEV-------DEET---------------GYVP-V 158 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhccccc-------cccc---------------ccce-E
Confidence 345677778888899999999999887 4677888888876422100 0000 0000 1
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCC---eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR---AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~---~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i 268 (706)
+.. |..- ...=|+.|.+.+. .-||++--+.=+-.+..+++-+++..++.+.+.++.
T Consensus 159 i~a----~~R~-----------------~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~ 217 (503)
T PLN03228 159 ICG----IARC-----------------KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRY 217 (503)
T ss_pred Eee----eccc-----------------CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 110 0000 0011233333211 126776333334455667888999999999999999
Q ss_pred HHHCCCCcEEEEE-ecC--ChhHHHHHHHHHH
Q 005248 269 CRKLDFHNFLFSM-KAS--NPVVMVQAYRLLV 297 (706)
Q Consensus 269 ~e~~~f~~iviS~-KaS--nv~~~i~ayrlla 297 (706)
+.++|++.+.+++ -+| |+..+.+.++.+.
T Consensus 218 Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~ 249 (503)
T PLN03228 218 AKSLGFHDIQFGCEDGGRSDKEFLCKILGEAI 249 (503)
T ss_pred HHHcCCceEEeccccccccCHHHHHHHHHHHH
Confidence 9999998788888 333 3444444444443
No 236
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=61.66 E-value=61 Score=34.99 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=80.1
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHH-HHcCCCEEEEe------------c--CC-HHHHHHHHHHHHhhccCCcCcceee
Q 005248 103 PIRVQTMTTNDTKDVAGTVEEVMRI-ADQGADLVRIT------------V--QG-KREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L-~~aGceiVRvt------------v--~~-~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
|-+|+|-.. +..+.+++++. ++.|...++=+ . ++ .+--+-|.+++++ +.+|+|.
T Consensus 9 PCsvEs~e~-----~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~-----~glpvvT 78 (258)
T TIGR01362 9 PCVIESEDH-----ALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEE-----FGVPILT 78 (258)
T ss_pred CCcccCHHH-----HHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----hCCceEE
Confidence 555555322 33444444443 23566666652 1 24 4677888899986 8999999
Q ss_pred ccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchh
Q 005248 167 DIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (706)
Q Consensus 167 DIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~ 246 (706)
|+|-..++. .+++++|=+-|--=|.-. .+|++++.+.|+||=|
T Consensus 79 eV~~~~~~~-~vae~vDilQIgArn~rn--------------------------~~LL~a~g~t~kpV~l---------- 121 (258)
T TIGR01362 79 DVHESSQCE-PVAEVVDIIQIPAFLCRQ--------------------------TDLLVAAAKTGRIVNV---------- 121 (258)
T ss_pred EeCCHHHHH-HHHhhCcEEEeCchhcch--------------------------HHHHHHHhccCCeEEe----------
Confidence 999765554 556889999997666621 2588999999999822
Q ss_pred HHHhhC--CChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 247 IMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 247 il~ryg--dt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
+| | -||+.|.-+| +.+...|=+||++
T Consensus 122 --Kr-G~~~t~~e~l~aa----eyi~~~Gn~~viL 149 (258)
T TIGR01362 122 --KK-GQFLSPWDMKNVV----EKVLSTGNKNILL 149 (258)
T ss_pred --cC-CCcCCHHHHHHHH----HHHHHcCCCcEEE
Confidence 22 4 5787776554 4556667677665
No 237
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=61.53 E-value=42 Score=34.71 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcCc
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~k 184 (706)
|.+..++++.++.+.|..-+.+-+.. .++.+-+..||+.+ |-+++|..|.|- +..-|++.++.++.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~---g~~~~l~vDan~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAV---GDDAELRVDANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhc---CCCCEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 67889999999999999999988743 46778888888853 557899999875 55556655555554
No 238
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=61.07 E-value=2.5e+02 Score=31.81 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCe-EEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC---CcEEEEEecCChhHHHHHHHHHH
Q 005248 222 PLVEKCKKYGRA-VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF---HNFLFSMKASNPVVMVQAYRLLV 297 (706)
Q Consensus 222 ~vv~~ake~~~~-IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f---~~iviS~KaSnv~~~i~ayrlla 297 (706)
++++..++.|.. |-||+ =|.+++++++++... -++...+.++.|++.|+ -++++-+=--+..++.+.++.+.
T Consensus 288 e~l~~l~~aG~~~v~iGi--ES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~ 363 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGY--ESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAK 363 (472)
T ss_pred HHHHHHHHcCCCEEEEcC--CCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666667653 44444 455677888876211 13456667788888888 35566667766676666666654
Q ss_pred H
Q 005248 298 A 298 (706)
Q Consensus 298 ~ 298 (706)
+
T Consensus 364 ~ 364 (472)
T TIGR03471 364 E 364 (472)
T ss_pred h
Confidence 4
No 239
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=60.78 E-value=63 Score=35.41 Aligned_cols=114 Identities=21% Similarity=0.243 Sum_probs=77.3
Q ss_pred HHHHHHHHHHH-HHcCCCEEEEecCC---------------HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhh
Q 005248 117 VAGTVEEVMRI-ADQGADLVRITVQG---------------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (706)
Q Consensus 117 v~atv~Qi~~L-~~aGceiVRvtv~~---------------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~ 180 (706)
+-.+.++++++ .++|+.++|=+.=+ .+--+-|.++|++ +.+|+|.|+|-..++. .+++
T Consensus 32 ~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~-----~glpvvTeV~~~~q~~-~vae 105 (290)
T PLN03033 32 ILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVA-----YDLPIVTDVHESSQCE-AVGK 105 (290)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----HCCceEEeeCCHHHHH-HHHh
Confidence 34555666665 34699999976544 4677888899986 8999999999765554 5568
Q ss_pred hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC--CChHHH
Q 005248 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGM 258 (706)
Q Consensus 181 ~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg--dt~eam 258 (706)
++|=+-|--=|. +=..++++|.+.|+||=| +| | .+|+.|
T Consensus 106 ~~DilQIgAr~~--------------------------rqtdLL~a~~~tgkpV~l------------Kk-Gq~~t~~e~ 146 (290)
T PLN03033 106 VADIIQIPAFLC--------------------------RQTDLLVAAAKTGKIINI------------KK-GQFCAPSVM 146 (290)
T ss_pred hCcEEeeCcHHH--------------------------HHHHHHHHHHccCCeEEe------------CC-CCCCCHHHH
Confidence 889898865555 113578888888999832 22 3 577777
Q ss_pred HHHHHHHHHHHHHCCCCcEEE
Q 005248 259 VESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 259 VeSAle~~~i~e~~~f~~ivi 279 (706)
.-+|. .+...|=++|++
T Consensus 147 ~~aae----ki~~~GN~~viL 163 (290)
T PLN03033 147 RNSAE----KVRLAGNPNVMV 163 (290)
T ss_pred HHHHH----HHHHcCCCcEEE
Confidence 66543 334445555544
No 240
>PTZ00300 pyruvate kinase; Provisional
Probab=60.66 E-value=52 Score=37.91 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHh----hhcCceeeCCCCCC
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA----ECFDKIRVNPGNFA 193 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~----~~~~kiRINPGNig 193 (706)
+.-.+.|....+.|+|.| ++|-.+.|+-+.++++.+.+.|.++++||=|-= .-|++-+ +.+|.|=|-||.+|
T Consensus 147 ekD~~dI~~ald~gvd~I--~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt--~eav~nldeI~~~~DgImVaRGDLg 222 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMI--FASFIRSAEQVGEVRKALGAKGGDIMIICKIEN--HQGVQNIDSIIEESDGIMVARGDLG 222 (454)
T ss_pred hhhHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHhHHHHHHhCCEEEEecchhh
Confidence 444556778889999995 566666666667777777667778999998743 3344322 46999999999998
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC----CChHHHHHHHHHHHHHH
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG----DSPRGMVESAFEFARIC 269 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg----dt~eamVeSAle~~~i~ 269 (706)
-.-. ++++...-+.++++|+++|+|+=+.++ +|+-.- +|-..+ --+.-+
T Consensus 223 vei~---------------~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ-------mLeSM~~~p~PTRAEv-----sDVanA 275 (454)
T PTZ00300 223 VEIP---------------AEKVVVAQKILISKCNVAGKPVICATQ-------MLESMTYNPRPTRAEV-----SDVANA 275 (454)
T ss_pred hhcC---------------hHHHHHHHHHHHHHHHHcCCCEEEECc-------hHHHHhhCCCCCchhH-----HHHHHH
Confidence 6321 344455566799999999999977773 333221 221111 011223
Q ss_pred HHCCCCcEEEE---EecCChhHHHHHHHHHHHhhhcC
Q 005248 270 RKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVH 303 (706)
Q Consensus 270 e~~~f~~iviS---~KaSnv~~~i~ayrlla~~~~~e 303 (706)
---|.+-+.+| .+-..|...|+.-+..+.+.|+.
T Consensus 276 v~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 312 (454)
T PTZ00300 276 VFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSA 312 (454)
T ss_pred HHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 33688999997 45567888899888888887653
No 241
>PRK05660 HemN family oxidoreductase; Provisional
Probab=60.66 E-value=1.2e+02 Score=33.48 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHH----cCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCC
Q 005248 117 VAGTVEEVMRIAD----QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (706)
Q Consensus 117 v~atv~Qi~~L~~----aGceiVRvt--v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPG 190 (706)
+++-++||..-.. .+.+-|.+. +|+.-.++.|..|-+.+++. .|+.-|..| .+=.||+
T Consensus 40 ~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~ei-------------t~e~np~ 103 (378)
T PRK05660 40 VDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRAR---LPFAPDAEI-------------TMEANPG 103 (378)
T ss_pred HHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHh---CCCCCCcEE-------------EEEeCcC
Confidence 6777777764222 345556665 77776677777777655431 233222211 1234999
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e 270 (706)
.+-. +.++..|+.|+- ||-+.-=|++++++++.|.. .-++.+++.++.+.
T Consensus 104 ~l~~---------------------------e~l~~Lk~~Gv~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~ 153 (378)
T PRK05660 104 TVEA---------------------------DRFVGYQRAGVN-RISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQ 153 (378)
T ss_pred cCCH---------------------------HHHHHHHHcCCC-EEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 9832 245677888865 88888889999999998732 12456677788888
Q ss_pred HCCCCcEEEEE----ecCChhHHHHHHHHHHH
Q 005248 271 KLDFHNFLFSM----KASNPVVMVQAYRLLVA 298 (706)
Q Consensus 271 ~~~f~~iviS~----KaSnv~~~i~ayrlla~ 298 (706)
+.||.+|-+.+ ---+.....+..+.+.+
T Consensus 154 ~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~ 185 (378)
T PRK05660 154 GLGLRSFNLDLMHGLPDQSLEEALDDLRQAIA 185 (378)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 99997655544 34444444444444443
No 242
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=60.49 E-value=79 Score=40.72 Aligned_cols=124 Identities=22% Similarity=0.274 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHH-HHHHhhccCCcCcceeeccCC-C--HHH--------HHHHhhh--
Q 005248 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADACF-EIKNSLVQKNYNIPLVADIHF-A--PSV--------ALRVAEC-- 181 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-tv~~~~~A~al~-~I~~~L~~~g~~iPLVADIHF-~--~~~--------Al~a~~~-- 181 (706)
.+.--+|+..|.++|+|++=+ |.+|..++++.- .+++.+.+.+.++|++.=+.| + .++ +...++.
T Consensus 163 ~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~ 242 (1229)
T PRK09490 163 VAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAK 242 (1229)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCC
Confidence 345578999999999999999 799999988655 445444567889999998888 2 222 1122221
Q ss_pred cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc-CCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~-~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
++.|=+|=+ .+. +.+.++++...+. ++||=+=-|.| |+. ....|-.+|+.|.+
T Consensus 243 ~~avGlNCs---~GP---------------------~~m~~~l~~l~~~~~~pi~vyPNAG-lP~-~~~~yd~tPe~~a~ 296 (1229)
T PRK09490 243 PLSIGLNCA---LGA---------------------DELRPYVEELSRIADTYVSAHPNAG-LPN-AFGEYDETPEEMAA 296 (1229)
T ss_pred CCEEEEcCC---CcH---------------------HHHHHHHHHHHHhcCCeEEEEeCCC-CCC-CCCCCCCCHHHHHH
Confidence 333334322 111 1334445444332 56776667998 443 34467678988888
Q ss_pred HHHHHH
Q 005248 261 SAFEFA 266 (706)
Q Consensus 261 SAle~~ 266 (706)
.+.+|+
T Consensus 297 ~~~~~~ 302 (1229)
T PRK09490 297 QIGEFA 302 (1229)
T ss_pred HHHHHH
Confidence 777764
No 243
>PRK12376 putative translaldolase; Provisional
Probab=60.40 E-value=33 Score=36.22 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HH-HHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EA-DACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~-~A-~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
.++.||.+|-+ ..|.++.++|.++|.+.+-.++ |-+|--. +- +.++.|++ |.++|+++=+= -=|++.-|+
T Consensus 56 ~~~~~vs~EV~----~~d~~~mv~eA~~l~~~~~nv~-VKIP~T~~~G~~gl~Ai~~-L~~~GI~vn~T--~vfs~~Qa~ 127 (236)
T PRK12376 56 IPDAPISFEVF----ADDLETMEKEAEKIASLGENVY-VKIPITNTKGESTIPLIKK-LSADGVKLNVT--AIFTIEQVK 127 (236)
T ss_pred cCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCeE-EEECCcCccchhHHHHHHH-HHHCCCeEEEe--eecCHHHHH
Confidence 34669999984 6789999999999999987755 7778653 21 34555553 55557665433 358888887
Q ss_pred HHhhh
Q 005248 177 RVAEC 181 (706)
Q Consensus 177 ~a~~~ 181 (706)
.|+++
T Consensus 128 ~a~~A 132 (236)
T PRK12376 128 EVVDA 132 (236)
T ss_pred HHHHH
Confidence 66665
No 244
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=60.06 E-value=15 Score=37.91 Aligned_cols=66 Identities=27% Similarity=0.444 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceee
Q 005248 119 GTVEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRV 187 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~-----~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRI 187 (706)
+|+++....+++|+|+|=-|--+ ..+--.+.-|++ |.+. .+|+||.-|++ |..|.+|++. +..|=+
T Consensus 100 st~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~-l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 100 STLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRE-LVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHH-HHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHH-HHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 57888889999999999887321 114445555554 5543 79999999996 8999999986 777765
No 245
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=59.81 E-value=1.7e+02 Score=29.48 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=75.3
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCH-----HH--HHHHhhh-cCcee--eCCCCCC
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP-----SV--ALRVAEC-FDKIR--VNPGNFA 193 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~-----~~--Al~a~~~-~~kiR--INPGNig 193 (706)
+.+..+.|++=|=++ -..++..++.|...+..+=.+.++.|.. ++ +.+|++. +|.|= +|.|-+-
T Consensus 23 ~~~a~~~~~~av~v~------p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~ 96 (203)
T cd00959 23 CDEAKEYGFAAVCVN------PCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALK 96 (203)
T ss_pred HHHHHHcCCCEEEEc------HHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHh
Confidence 333444677776555 3344445666654444444444444431 22 2245553 66554 6777543
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCC
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~ 273 (706)
++. .+++.+.+..+++.|. |+|+++=+..|-|+++.+. .-.|+|.+.|
T Consensus 97 ~~~----------------~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~--------------~a~ria~e~G 144 (203)
T cd00959 97 SGD----------------YEAVYEEIAAVVEACG--GAPLKVILETGLLTDEEII--------------KACEIAIEAG 144 (203)
T ss_pred CCC----------------HHHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHH--------------HHHHHHHHhC
Confidence 322 1233445667888886 8999997778777533222 2367889999
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 274 FHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 274 f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
-+-|+.|-=-.....+++.-++|.+-
T Consensus 145 aD~IKTsTG~~~~~at~~~v~~~~~~ 170 (203)
T cd00959 145 ADFIKTSTGFGPGGATVEDVKLMKEA 170 (203)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 88777761111223344554555544
No 246
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=59.43 E-value=29 Score=36.87 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 144 ~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
..+.|+.+.++|++.|+.+-|--|= ++.-...|.+. ++.|=+.-|.|++.. ++++..+|+++|.+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~--------~~~~~~~el~~i~~---- 173 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPYANAY--------DKAEREAELERIAK---- 173 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCC--------CchhHHHHHHHHHH----
Confidence 4567778888888888888887663 34444456665 999999999998732 34556677777755
Q ss_pred HHHHHHHcCCeEEEecCCCC
Q 005248 223 LVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GS 242 (706)
-.+.|.+.|. +||.|-
T Consensus 174 aa~~a~~~GL----~VnAGH 189 (234)
T cd00003 174 AAKLARELGL----GVNAGH 189 (234)
T ss_pred HHHHHHHcCC----EEecCC
Confidence 6677888774 778773
No 247
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=59.24 E-value=1.2e+02 Score=35.19 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=91.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-----cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAP 172 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt-----v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 172 (706)
.|+ |-...=|||+++-.+++.-++..++|++.|||-+=|- ..-.++-+-++.||+. +++|+----|-..
T Consensus 137 ~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~-----~~~pv~lHtH~Ts 210 (472)
T COG5016 137 HGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE-----LPVPVELHTHATS 210 (472)
T ss_pred cCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh-----cCCeeEEeccccc
Confidence 444 7777889999999999999999999999999988764 1223566778889986 7799988888876
Q ss_pred HHHH----HHhhh-cCcee--eCCCCCCcchhhcccccc-------chHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 173 SVAL----RVAEC-FDKIR--VNPGNFADRRAQFEQLEY-------TDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 173 ~~Al----~a~~~-~~kiR--INPGNig~~~k~F~~~~Y-------tdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
-+|. +|+|+ +|-|= |-|=..|...-..+..+| +.-==.++++.|.+-|+++-++=+..=-|.=.|+
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~~~~~~~~~~~ 290 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYKGLLEPQAKGV 290 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHhhccCccccCC
Confidence 6654 66776 77765 777666654433333332 2111235667777777765555433223333343
No 248
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=58.90 E-value=25 Score=40.13 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCEEEEec-C------------CHHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cC
Q 005248 119 GTVEEVMRIADQGADLVRITV-Q------------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv-~------------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~ 183 (706)
.|.++...|.++|++.|++.. | +.-.++++.++.+..+ ...+|+|||-... +.-+.+|+.. ++
T Consensus 278 ~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~--~~~~~viadGGi~~~~di~kAla~GA~ 355 (486)
T PRK05567 278 ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAK--KYGIPVIADGGIRYSGDIAKALAAGAS 355 (486)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCCCCHHHHHHHHHhCCC
Confidence 346788899999999998731 1 1235778888877544 3468999986654 3333344443 55
Q ss_pred ceee
Q 005248 184 KIRV 187 (706)
Q Consensus 184 kiRI 187 (706)
.+=+
T Consensus 356 ~v~~ 359 (486)
T PRK05567 356 AVML 359 (486)
T ss_pred EEEE
Confidence 5543
No 249
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.66 E-value=26 Score=38.57 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCEEEEe-------cCCHH--------HHHHHHHHHHhhccCCcCcceeec--cCCCHHHHHHHhhh-
Q 005248 120 TVEEVMRIADQGADLVRIT-------VQGKR--------EADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC- 181 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvt-------v~~~~--------~A~al~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~a~~~- 181 (706)
|.+..+.|.++|+|++++. +.... ...++.++++. .++|+||| |+....++ +|+..
T Consensus 150 t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-----~~ipVIAdGGI~~~~Di~-KaLa~G 223 (326)
T PRK05458 150 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIA-KSIRFG 223 (326)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-----cCCCEEEeCCCCCHHHHH-HHHHhC
Confidence 7788999999999999865 11111 34567777775 46999999 55544444 44443
Q ss_pred cCceee
Q 005248 182 FDKIRV 187 (706)
Q Consensus 182 ~~kiRI 187 (706)
++.|-+
T Consensus 224 A~aV~v 229 (326)
T PRK05458 224 ATMVMI 229 (326)
T ss_pred CCEEEe
Confidence 666655
No 250
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=58.65 E-value=2e+02 Score=31.04 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=23.3
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
++.+.++|+. .++|.+..||+.+.+ .|++-++++
T Consensus 49 ~~~~~~~G~~--~~~vas~~Ea~~~~~-------~G~~~ill~ 82 (361)
T cd06821 49 VRLQLEAGIT--KFKCATIAEAEMLAE-------AGAPDVLLA 82 (361)
T ss_pred HHHHHhcCCC--cEEEecHHHHHHHHH-------cCCCeEEEe
Confidence 4455678874 899999999987654 366544444
No 251
>PRK05826 pyruvate kinase; Provisional
Probab=58.60 E-value=48 Score=38.23 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCc-CcceeeccCCCHHHHHHHhh----hcCceeeCCC
Q 005248 117 VAGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAE----CFDKIRVNPG 190 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g~-~iPLVADIHF~~~~Al~a~~----~~~kiRINPG 190 (706)
++.-...|++..+.|++.|=+. |.+.++++.+ ++.|.+.|. ++.++|=|-= +-|++.++ .+|.|=|-||
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l---~~~l~~~~~~~~~iiakIEt--~eav~nldeI~~~~DgImIgrg 246 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEA---RRLLREAGCPHAKIIAKIER--AEAVDNIDEIIEASDGIMVARG 246 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HHHHHHcCCcCceEEEEEcC--HHHHHhHHHHHHHcCEEEECcc
Confidence 3555667788889999997665 5555555555 555666677 7999998832 34554433 3899999999
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC--CCh-HHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP-RGMVESAFEFAR 267 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg--dt~-eamVeSAle~~~ 267 (706)
.+|-.- . .+++.+..+.++++|+++|+|+=+-+ .+|+-.- +.| .|= .--+.
T Consensus 247 DLg~el--------g-------~~~v~~~qk~Ii~~c~~~gKpvi~AT-------qmLeSM~~~p~PTRAE----vsDVa 300 (465)
T PRK05826 247 DLGVEI--------P-------DEEVPGLQKKIIRKAREAGKPVITAT-------QMLESMIENPRPTRAE----VSDVA 300 (465)
T ss_pred hhhhhc--------C-------cHhHHHHHHHHHHHHHHcCCCEEEEC-------HHHHHHhhCCCCchhh----hhhHH
Confidence 997622 1 23444555789999999999984443 2333321 112 000 01222
Q ss_pred HHHHCCCCcEEEE---EecCChhHHHHHHHHHHHhhhc
Q 005248 268 ICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYV 302 (706)
Q Consensus 268 i~e~~~f~~iviS---~KaSnv~~~i~ayrlla~~~~~ 302 (706)
-+-..|.+-+.+| .+-..|...|+.-+.++.+.++
T Consensus 301 nav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~ 338 (465)
T PRK05826 301 NAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEK 338 (465)
T ss_pred HHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHh
Confidence 2344688999998 4556788899999999988764
No 252
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.58 E-value=75 Score=33.69 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=110.1
Q ss_pred EEEceeecCCCCceEEEeccCCCC-CC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHHHH
Q 005248 91 VMVGNVAIGSEHPIRVQTMTTNDT-KD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADACF 149 (706)
Q Consensus 91 V~VG~v~IGG~~PI~VQSMt~t~T-~D---v~atv~Qi~~L~~aGceiVRvt-----------------v~~~~~A~al~ 149 (706)
+++|++.+ .|-|+.-.|++... .| .+..++--.+.++-|+-+| ++ .-+.+..++++
T Consensus 4 ~~i~~~~l--~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~gli-i~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 4 IKIGGLTL--KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLI-ITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred cccCCEee--ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEE-EECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 45565555 57777778865443 23 5566666667777676666 22 22457788888
Q ss_pred HHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH
Q 005248 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (706)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake 229 (706)
++.+...+.|..+ ++=++--.+.+...... ..=+-|-.+..........+.| .+|++.|.+.|..-.+.|++
T Consensus 81 ~~~~~vh~~g~~~--~~Ql~h~G~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~mt----~~ei~~~i~~~~~aA~~a~~ 152 (327)
T cd02803 81 KLTEAVHAHGAKI--FAQLAHAGRQAQPNLTG--GPPPAPSAIPSPGGGEPPREMT----KEEIEQIIEDFAAAARRAKE 152 (327)
T ss_pred HHHHHHHhCCCHh--hHHhhCCCcCCCCcCCC--CCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 8888877776542 22221111111100000 0001121111100000111222 45778888888888888888
Q ss_pred cCCe-EEEecCCCCCchhH--------HHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh-----HHHHHHHH
Q 005248 230 YGRA-VRIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQAYRL 295 (706)
Q Consensus 230 ~~~~-IRIGvN~GSL~~~i--------l~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~-----~~i~ayrl 295 (706)
.|.- |=|=..||-|-..+ -.+||.+.+.-..-.+|-++-.++.==.++.|++|.|-.. ...+-...
T Consensus 153 aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~ 232 (327)
T cd02803 153 AGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE 232 (327)
T ss_pred cCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH
Confidence 7653 44445567663333 3358876666666666666655553115789999988211 12233445
Q ss_pred HHHhhhcCCCCC
Q 005248 296 LVAEMYVHGWDY 307 (706)
Q Consensus 296 la~~~~~eg~~Y 307 (706)
+++++++.|.||
T Consensus 233 la~~l~~~G~d~ 244 (327)
T cd02803 233 IAKALEEAGVDA 244 (327)
T ss_pred HHHHHHHcCCCE
Confidence 555655566654
No 253
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=58.57 E-value=18 Score=35.42 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC--CcCcceeec
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK--NYNIPLVAD 167 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~--g~~iPLVAD 167 (706)
+...+++.++.++|++.|-+..++....+.++.+++ +.+. .+++||+.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 71 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARA-LKELCRRYGVPLIVN 71 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHH-HHHHHHHhCCeEEEe
Confidence 457789999999999999999887665555444433 2211 467888864
No 254
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=58.41 E-value=26 Score=38.53 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEEec----------------CCHHHHHHHHHHHHhhccCCcCcceeec--cCCCHHHHH
Q 005248 120 TVEEVMRIADQGADLVRITV----------------QGKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVAL 176 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv----------------~~~~~A~al~~I~~~L~~~g~~iPLVAD--IHF~~~~Al 176 (706)
|.+..++|.++||+.|+|.. ++. ...++.++++. .++|++|| |.....++.
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-~l~ai~ev~~a-----~~~pVIadGGIr~~~Di~K 215 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-QLAALRWCAKA-----ARKPIIADGGIRTHGDIAK 215 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-HHHHHHHHHHh-----cCCeEEEECCcCcHHHHHH
Confidence 78899999999999999882 211 35789999885 46999999 566565553
No 255
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=58.23 E-value=2.4e+02 Score=29.50 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=91.9
Q ss_pred HHHHHcCCCEEEEe---------cCC------HHHHHHHHHHHHhhccCCcCcceeeccCC---CHHHHHHHh----hh-
Q 005248 125 MRIADQGADLVRIT---------VQG------KREADACFEIKNSLVQKNYNIPLVADIHF---APSVALRVA----EC- 181 (706)
Q Consensus 125 ~~L~~aGceiVRvt---------v~~------~~~A~al~~I~~~L~~~g~~iPLVADIHF---~~~~Al~a~----~~- 181 (706)
+-++++|++.+=++ .|| .+-.+.+..|.+ +.++|+++|+-| ++.-+...+ +.
T Consensus 23 ~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~-----~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 23 RLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIAR-----AVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred HHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHh-----hccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 44566788888776 233 344566666776 578999999999 654343333 33
Q ss_pred cCceeeCCCCCCcchhhc-cccccchHHHHHHHhhHHhhHHHHHHHHHH-cCCeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 182 FDKIRVNPGNFADRRAQF-EQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F-~~~~YtdeeY~~El~~I~~~f~~vv~~ake-~~~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
++.|=|.-+-+..+-..+ +...++.||+.+ +++..++.++. -+..|=-++..=... +.+ +
T Consensus 98 ~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~-------ki~aa~~a~~~~~~~~IiARTDa~~~~----------~~~-~ 159 (243)
T cd00377 98 AAGIHIEDQVGPKKCGHHGGKVLVPIEEFVA-------KIKAARDARDDLPDFVIIARTDALLAG----------EEG-L 159 (243)
T ss_pred CEEEEEecCCCCccccCCCCCeecCHHHHHH-------HHHHHHHHHhccCCeEEEEEcCchhcc----------CCC-H
Confidence 666666322211100000 012345555544 44445555555 345554443221110 112 5
Q ss_pred HHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccC
Q 005248 260 ESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG 317 (706)
+.|++.++...+.|=+=+-+-... ..+-++.++++ .+-||-+-.++-+
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~-----~~~Pl~~~~~~~~ 207 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK-----DPEEIRAFAEA-----PDVPLNVNMTPGG 207 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC-----CHHHHHHHHhc-----CCCCEEEEecCCC
Confidence 779999999999998666554333 34667777877 6788888877654
No 256
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=57.93 E-value=1.6e+02 Score=31.82 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHHcCCCEEEEecCCHHHHHHHH
Q 005248 126 RIADQGADLVRITVQGKREADACF 149 (706)
Q Consensus 126 ~L~~aGceiVRvtv~~~~~A~al~ 149 (706)
.|.++|++ .+.|.+.+||..+.
T Consensus 47 ~l~~~G~~--~~~vas~~Ea~~~~ 68 (367)
T cd00430 47 ALEEAGAD--YFAVATLEEALELR 68 (367)
T ss_pred HHHHCCCC--EEEECcHHHHHHHH
Confidence 46678986 68888988888654
No 257
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=57.50 E-value=87 Score=33.59 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCeEE-EecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE
Q 005248 219 VFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IR-IGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~ 281 (706)
.+.++++.+++.++.+. |-+..||-..+.-. | ...++.+.+.++.+++.|+.==.||+
T Consensus 149 e~~~~~~~~~~~~l~l~Gl~~H~gs~~~d~~~-~----~~~~~~~~~~~~~l~~~g~~~~~id~ 207 (368)
T cd06810 149 EARAALERAKELDLRLVGLHFHVGSQILDLET-I----VQALSDARELIEELVEMGFPLEMLDL 207 (368)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcCCCCHHH-H----HHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 45667778888773322 34467775432211 1 35667777778888877765445565
No 258
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=57.42 E-value=16 Score=40.19 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=37.0
Q ss_pred CCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-Ccceee
Q 005248 115 KDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (706)
Q Consensus 115 ~Dv~atv~----Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 166 (706)
-|-++|++ |....++||||+| .|+.=-=-.+..||+.|++.|+ ++|+++
T Consensus 135 idND~Tl~~L~~~Avs~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 188 (320)
T cd04823 135 ILNDETVEVLCKQALVQAEAGADIV---APSDMMDGRIGAIREALDAEGFTNVSILS 188 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEE---EcccchhhHHHHHHHHHHHCCCCCCceee
Confidence 45566655 5556799999997 4544334568899999999999 699986
No 259
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=57.13 E-value=1.1e+02 Score=31.09 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCC-cCcceeeccCCCHH-HHHHHhhhcCceeeCCCCCCcch
Q 005248 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAPS-VALRVAECFDKIRVNPGNFADRR 196 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g-~~iPLVADIHF~~~-~Al~a~~~~~kiRINPGNig~~~ 196 (706)
..+.+|.+..++||+. ++|.+.+||.. +. ..||+.| +..|+++ ++.++ ....+.+ ..+.|- + +
T Consensus 36 hG~~~v~~~~~~G~~~--fgva~~~Ea~~--k~-~~Lr~~g~~~~~~lg--~~~~~~~~~~~~~----~~~~~~-I-~-- 100 (224)
T cd06824 36 KPADAIREAYAAGQRH--FGENYVQEALE--KI-EALRDLQDIEWHFIG--PIQSNKTKLIAEN----FDWVHS-V-D-- 100 (224)
T ss_pred CCHHHHHHHHHcCCcc--cCcChHHHHHH--HH-HHhccCCCeeEEEEc--CchhhhHHHHHhh----CCEEEe-c-C--
Confidence 4455666666899985 78888888753 11 2345554 4455555 44553 2333222 222221 1 1
Q ss_pred hhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE--ecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCC-
Q 005248 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD- 273 (706)
Q Consensus 197 k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI--GvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~- 273 (706)
+.+ .++.+-+.|++.|.++.| =+|.|.= |.|+|-+|+. +.+.++.+.++.
T Consensus 101 ---------s~~----------~~~~l~~~a~~~g~~~~v~l~id~~~G----m~R~Gi~~~~----~~~~~~~i~~~~~ 153 (224)
T cd06824 101 ---------RLK----------IAKRLNDQRPAGLPPLNVCIQVNISGE----DSKSGVAPED----AAELAEAISQLPN 153 (224)
T ss_pred ---------CHH----------HHHHHHHHHHhcCCCCcEEEEEEcCCC----CCCCCCCHHH----HHHHHHHHhcCCC
Confidence 122 334455566666655544 5554321 6788976643 444444444422
Q ss_pred CC-cEEEEEe--cCChhHHHHHHHHH---HHhhhcCCCCCc-cccccc
Q 005248 274 FH-NFLFSMK--ASNPVVMVQAYRLL---VAEMYVHGWDYP-LHLGVT 314 (706)
Q Consensus 274 f~-~iviS~K--aSnv~~~i~ayrll---a~~~~~eg~~YP-LHLGVT 314 (706)
.. .=+.|.= +.|+..-.+.++.+ .+++.+.+...+ +|+|=|
T Consensus 154 l~l~Gl~tH~a~~~~~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gnS 201 (224)
T cd06824 154 LRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMS 201 (224)
T ss_pred CcEEEEEEeCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcCc
Confidence 21 0122331 22344555666665 455554443222 577644
No 260
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=56.99 E-value=43 Score=33.71 Aligned_cols=70 Identities=6% Similarity=0.085 Sum_probs=46.1
Q ss_pred CceEEEec--cCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHH
Q 005248 102 HPIRVQTM--TTNDT--KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (706)
Q Consensus 102 ~PI~VQSM--t~t~T--~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 175 (706)
.|+++-.. +.|.. ..+.+-.+...++.+.||+++-|++.+..+.++..+-.+.+ .+++.||++|- +..++
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~--~~l~fpllsD~--~~~ia 105 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI--AKIKYAMIGDP--TGALT 105 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccc--cCCceeEEEcC--chHHH
Confidence 36666655 33333 33334445556677889999999999988877765543322 36889999994 55554
No 261
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=56.82 E-value=30 Score=36.89 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 144 ~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
..+.|+.+.++|++.|+.+-|--| =++.-...|.+. ++.|=+.-|.|++. |. .+. .+||++|..
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~yA~a---~~-----~~~-~~el~~~~~---- 175 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPYADA---KT-----EAE-AAELERIAK---- 175 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhhhcC---CC-----cch-HHHHHHHHH----
Confidence 467788888889999999988887 344444456665 99999999999874 21 112 455655544
Q ss_pred HHHHHHHcCCeEEEecCCC
Q 005248 223 LVEKCKKYGRAVRIGTNHG 241 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~G 241 (706)
-.+.|++.|. +||.|
T Consensus 176 aa~~a~~lGL----~VnAG 190 (239)
T PRK05265 176 AAKLAASLGL----GVNAG 190 (239)
T ss_pred HHHHHHHcCC----EEecC
Confidence 7788888884 77877
No 262
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=56.75 E-value=68 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT 138 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt 138 (706)
+.|+.||=+.+ |.+.-++.+.++.++|++.|=|-
T Consensus 62 e~p~~vQl~g~----~p~~~~~aA~~~~~~g~d~IdiN 95 (312)
T PRK10550 62 GTLVRIQLLGQ----YPQWLAENAARAVELGSWGVDLN 95 (312)
T ss_pred CCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEe
Confidence 57999998855 45666666667788899887553
No 263
>PLN02321 2-isopropylmalate synthase
Probab=56.75 E-value=4.3e+02 Score=31.97 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGN 191 (706)
+..++.-++=++.|.++|-+.+=+..| ++++.++++.|.+.+.. .+.++.-++ ..+.=-|-|+-.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~---------~v~~~~~v~----~i~a~~ra~~~d 170 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGN---------EVDEDGYVP----VICGLSRCNKKD 170 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhccc---------CCCccccce----eeeeehhccHHh
Confidence 466788888899999999999999875 55788889999875321 111111000 000001111111
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i 268 (706)
|+.|.+.. ..-||.+-..+=+-.+..+++-+.+..++.+.+.++.
T Consensus 171 --------------------------------Id~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~ 218 (632)
T PLN02321 171 --------------------------------IDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKY 218 (632)
T ss_pred --------------------------------HHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12222221 1235666433333445556677888888888888888
Q ss_pred HHHCCCCcEEEEEe-c--CChhHHHHHHHHHH
Q 005248 269 CRKLDFHNFLFSMK-A--SNPVVMVQAYRLLV 297 (706)
Q Consensus 269 ~e~~~f~~iviS~K-a--Snv~~~i~ayrlla 297 (706)
+.++|+..+.+|+= + +|+.-+++..+.+.
T Consensus 219 Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~ 250 (632)
T PLN02321 219 ARSLGCEDVEFSPEDAGRSDPEFLYRILGEVI 250 (632)
T ss_pred HHHcCCceEEEecccCCCCCHHHHHHHHHHHH
Confidence 88888877888873 2 34444544444443
No 264
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.20 E-value=76 Score=34.52 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHHHHHhhh
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC 181 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~-----------~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~ 181 (706)
.+.+...+|+.++.+.|...+.+-+-+ .++.+.+..+++. .|-++.|..|-+ |+++-|+..++.
T Consensus 122 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~---~g~~~~l~vDaN~~~~~~~A~~~~~~ 198 (352)
T cd03325 122 DRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA---VGPDIDIGVDFHGRVSKPMAKDLAKE 198 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh---hCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 366778899999999999999998742 2456667777664 345789999986 455666666666
Q ss_pred cCce
Q 005248 182 FDKI 185 (706)
Q Consensus 182 ~~ki 185 (706)
++++
T Consensus 199 l~~~ 202 (352)
T cd03325 199 LEPY 202 (352)
T ss_pred cccc
Confidence 6654
No 265
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.17 E-value=62 Score=36.47 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=40.8
Q ss_pred CcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 161 NIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 161 ~iPLVADIH-F~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
++|+.+|=+ |+++-+...++ ++|-+.+.|...|.-. .+.++.+.|.++|+++
T Consensus 294 ~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit----------------------~~~kia~lA~a~gi~~ 348 (415)
T cd03324 294 PIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVN----------------------ENLAVLLMAAKFGVPV 348 (415)
T ss_pred CCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 699999954 45555555444 5999999999999733 5678999999999988
No 266
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=56.05 E-value=70 Score=31.29 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcCcceeeccCCC-H--HHHHHHhhh-cCcee
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA-P--SVALRVAEC-FDKIR 186 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~--A~al~~I~~~L~~~g~~iPLVADIHF~-~--~~Al~a~~~-~~kiR 186 (706)
|..|.+.+.+-++.|.+. .+.+.+..|-... -+.++.|++. ..++|+++|.=+. + ..+..++++ ++-+=
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 777889999999999998 9999996554321 3445555543 3478998883322 2 235556665 55444
Q ss_pred eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 187 INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
+..-.- .+...++++.|+++|+ ++|+
T Consensus 83 ~h~~~~------------------------~~~~~~~i~~~~~~g~--~~~v 108 (202)
T cd04726 83 VLGAAP------------------------LSTIKKAVKAAKKYGK--EVQV 108 (202)
T ss_pred EEeeCC------------------------HHHHHHHHHHHHHcCC--eEEE
Confidence 432110 0134568999999986 4475
No 267
>PRK00077 eno enolase; Provisional
Probab=55.89 E-value=1.3e+02 Score=34.01 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCC-HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhh--hcCceeeC
Q 005248 115 KDVAGTVEEVMRIAD-QGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVN 188 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~-aGceiVRvtv~~-~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~--~~~kiRIN 188 (706)
.+.+..++...++.+ .+ |+=|-=|= .++-+.+.++++++ |-.+||++|=+| +++-...+++ +++-+.|-
T Consensus 261 ~s~~e~~~~~~~l~e~y~--i~~iEdPl~~~D~~g~~~L~~~~---~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik 335 (425)
T PRK00077 261 LTSEEMIDYLAELVDKYP--IVSIEDGLDENDWEGWKLLTEKL---GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIK 335 (425)
T ss_pred CCHHHHHHHHHHHHhhCC--cEEEEcCCCCccHHHHHHHHHhc---CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeC
Confidence 466677777777766 44 44455343 34678899998863 336999999876 6888877776 49999999
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCc
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS 244 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~ 244 (706)
|..+|.-. ...++++.|+++|+.+=+ .|+|.+
T Consensus 336 ~~~~GGit----------------------ea~~ia~lA~~~gi~~~v--sh~sgE 367 (425)
T PRK00077 336 VNQIGTLT----------------------ETLDAIELAKRAGYTAVV--SHRSGE 367 (425)
T ss_pred ccccCCHH----------------------HHHHHHHHHHHcCCeEEE--eCCCCc
Confidence 99999833 567799999999997544 455553
No 268
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=55.82 E-value=1.1e+02 Score=33.62 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHh--hhcCceeeCCCC
Q 005248 116 DVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVA--ECFDKIRVNPGN 191 (706)
Q Consensus 116 Dv~atv~Qi~~L-~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~--~~~~kiRINPGN 191 (706)
|++.+++=+++| .+.+-+.+===+++ .+.+.+++++ +.+|+.+|=.+ ...-....+ .+++-+.|.|..
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~iEqP~~~---~~~la~Lr~~-----~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~ 217 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYVEQPCAT---VEELAELRRR-----VGVPIAADESIRRAEDPLRVARAGAADVAVLKVAP 217 (327)
T ss_pred CHHHHHHHHHHhhhccCceEEecCCCC---HHHHHHHHHh-----CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcch
Confidence 444444444555 33444443322333 4555566653 78999999553 333222333 459999999999
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
+|.- .++++.|.++|+++=++
T Consensus 218 ~GGi-------------------------t~~lkiA~~~gi~v~v~ 238 (327)
T PRK02901 218 LGGV-------------------------RAALDIAEQIGLPVVVS 238 (327)
T ss_pred hCCH-------------------------HHHHHHHHHcCCcEEEe
Confidence 9973 23556789999998666
No 269
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=55.70 E-value=6.6 Score=29.95 Aligned_cols=13 Identities=54% Similarity=1.462 Sum_probs=9.3
Q ss_pred ceEeccCCCCccc
Q 005248 640 TEYVSCPSCGRTL 652 (706)
Q Consensus 640 te~ISCPsCGRTl 652 (706)
..++.||.|+|..
T Consensus 2 ~~~~~C~nC~R~v 14 (33)
T PF08209_consen 2 SPYVECPNCGRPV 14 (33)
T ss_dssp S-EEE-TTTSSEE
T ss_pred CCeEECCCCcCCc
Confidence 5789999999963
No 270
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=55.45 E-value=83 Score=35.43 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH---------HHHHHHHHHHhhccCCcC-cceeeccCCC-HHHHHHHhhh--
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKR---------EADACFEIKNSLVQKNYN-IPLVADIHFA-PSVALRVAEC-- 181 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~---------~A~al~~I~~~L~~~g~~-iPLVADIHF~-~~~Al~a~~~-- 181 (706)
.|.+.||+-.+.+.+|||.++=|---+.+ +-++++.||+. .+ +|++|----. ++-+..|+++
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~-----~~~ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVREN-----VPDIPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHh-----CcCCcEEeeCCcCcHHHHHHHHHHhC
Confidence 69999999999999999999866533322 34677777774 44 8888742221 4455556653
Q ss_pred cCceeeCCCCCCcch
Q 005248 182 FDKIRVNPGNFADRR 196 (706)
Q Consensus 182 ~~kiRINPGNig~~~ 196 (706)
++.|=+-=|++-.+.
T Consensus 227 ~dGVM~arglL~NPa 241 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPA 241 (358)
T ss_pred CceEEecchhhcCch
Confidence 666666555555443
No 271
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.40 E-value=66 Score=35.16 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=47.1
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEe----cCChhHHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK----ASNPVVMVQAYRLLVA 298 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~K----aSnv~~~i~ayrlla~ 298 (706)
.++..++.|+. ||-+.-=|.++++++.+|-.. -++.+++.++.+.+.||.++.+.+= --+.....+..+.+.+
T Consensus 110 ~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~ 186 (375)
T PRK05628 110 FFAALRAAGFT-RVSLGMQSAAPHVLAVLDRTH--TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALE 186 (375)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 45666777763 666666778899999998321 1345666777888899987877653 3444445555554443
No 272
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.31 E-value=3.2e+02 Score=30.08 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHhhccCCcC---cceeeccCCCHHHHHHH
Q 005248 115 KDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYN---IPLVADIHFAPSVALRV 178 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvt-------------v~~~~~A~al~~I~~~L~~~g~~---iPLVADIHF~~~~Al~a 178 (706)
-+++..++=+..|.++|.+++=++ .+...+.+.++.+++.+....+. +|-.+++ +-...|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~----~dl~~a 96 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTV----HDLKAA 96 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCH----HHHHHH
Confidence 456666777788999999999996 23334556667776654332221 1222333 334455
Q ss_pred hhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHH
Q 005248 179 AEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 179 ~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
.++ ++.|||- .... + .+...+.++.+|++|.-+.+.. ..- +.-+|+.
T Consensus 97 ~~~gvd~iri~-----~~~~--------e----------~d~~~~~i~~ak~~G~~v~~~l-----~~s----~~~~~e~ 144 (333)
T TIGR03217 97 YDAGARTVRVA-----THCT--------E----------ADVSEQHIGMARELGMDTVGFL-----MMS----HMTPPEK 144 (333)
T ss_pred HHCCCCEEEEE-----eccc--------h----------HHHHHHHHHHHHHcCCeEEEEE-----Ecc----cCCCHHH
Confidence 565 9999963 1110 1 1246789999999998776443 211 2335544
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
-++.++.+++.|-+. |+++-| .|..+-+-++.+.+.
T Consensus 145 ----l~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 145 ----LAEQAKLMESYGADC--VYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred ----HHHHHHHHHhcCCCE--EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 455677788888774 566655 455554455555444
No 273
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.26 E-value=86 Score=32.37 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCC
Q 005248 121 VEEVMRIADQGADLVRITVQ------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPGNi 192 (706)
++-++.+.++|++-+=|+=- .....+.+++|++. +++|++++-... ..-+..+++. ++++=|+=+.+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-----~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-----VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-----CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44555677899976655422 22334456666653 679999986665 5555566665 88887776666
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC-CeEEEec--CC----CCCchhHHHhhCCChHHHHHHHHHH
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGT--NH----GSLSDRIMSYYGDSPRGMVESAFEF 265 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~-~~IRIGv--N~----GSL~~~il~rygdt~eamVeSAle~ 265 (706)
.+++ . +.+.++++| -.|...+ .. |.. .+.-+-+..+... +.+++
T Consensus 108 ~~p~----------------------~---~~ei~~~~g~~~iv~slD~~~~~~~~~~--~v~~~~~~~~~~~--~~~~~ 158 (253)
T PRK02083 108 ANPE----------------------L---ISEAADRFGSQCIVVAIDAKRDPEPGRW--EVYTHGGRKPTGL--DAVEW 158 (253)
T ss_pred hCcH----------------------H---HHHHHHHcCCCCEEEEEEeccCCCCCCE--EEEEcCCceecCC--CHHHH
Confidence 5433 2 223344443 1233332 22 211 1222222222222 56888
Q ss_pred HHHHHHCCCCcEEEE
Q 005248 266 ARICRKLDFHNFLFS 280 (706)
Q Consensus 266 ~~i~e~~~f~~iviS 280 (706)
++.+++.|++.+++.
T Consensus 159 ~~~~~~~g~~~ii~~ 173 (253)
T PRK02083 159 AKEVEELGAGEILLT 173 (253)
T ss_pred HHHHHHcCCCEEEEc
Confidence 999999999998774
No 274
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=55.14 E-value=3.6e+02 Score=30.51 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=91.4
Q ss_pred EEEceeecCCC-CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec---CCH---------------HHHHHHHHH
Q 005248 91 VMVGNVAIGSE-HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV---QGK---------------READACFEI 151 (706)
Q Consensus 91 V~VG~v~IGG~-~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv---~~~---------------~~A~al~~I 151 (706)
++||+-.||-+ .|..|==+.--.--|.+-+.+-|..-+++|||.|.+-+ ++. -+...+.++
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel 81 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYEL 81 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHH
Confidence 68999999985 55566667777788999999999999999999999875 111 112222333
Q ss_pred HH--------------hhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhH
Q 005248 152 KN--------------SLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI 216 (706)
Q Consensus 152 ~~--------------~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I 216 (706)
.+ .-++.|+ ++-=--|++..|...-.. +..+.|--|-+
T Consensus 82 ~e~~~~p~e~~~~Lke~a~~~Gi---~~~SSPfd~~svd~l~~~~~~ayKIaS~E~------------------------ 134 (347)
T COG2089 82 YEEAETPLEWHAQLKEYARKRGI---IFFSSPFDLTAVDLLESLNPPAYKIASGEI------------------------ 134 (347)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCe---EEEecCCCHHHHHHHHhcCCCeEEecCccc------------------------
Confidence 33 2222332 112223455444443332 33444433333
Q ss_pred HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEE-EEecC
Q 005248 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF-SMKAS 284 (706)
Q Consensus 217 ~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ivi-S~KaS 284 (706)
..-|+++.....+.||=+-+- -+-.++--+-+++|++.|-.|+++ .|=++
T Consensus 135 --~~~plik~iA~~~kPiIlSTG----------------ma~~~ei~~av~~~r~~g~~~i~LLhC~s~ 185 (347)
T COG2089 135 --NDLPLIKYIAKKGKPIILSTG----------------MATIEEIEEAVAILRENGNPDIALLHCTSA 185 (347)
T ss_pred --cChHHHHHHHhcCCCEEEEcc----------------cccHHHHHHHHHHHHhcCCCCeEEEEecCC
Confidence 335799999999999966542 122345556778899998876654 45443
No 275
>PRK07329 hypothetical protein; Provisional
Probab=54.82 E-value=60 Score=33.60 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=53.8
Q ss_pred HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 005248 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (706)
Q Consensus 217 ~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrll 296 (706)
++.+.+++++|+++|+++= +|.+++. +++..+ .. .+.+++|.++|-..|+++-=|-++...-.-+...
T Consensus 164 ~~~~~~i~~~~~~~~~~lE--iNt~~~~-----~~~~~~-~~----~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a 231 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFE--LNTKSMY-----LYGNEG-LY----RYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDA 231 (246)
T ss_pred HHHHHHHHHHHHHcCCeEE--EECcccc-----cCCCCc-ch----HHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4566789999999999995 5877773 333222 11 3448999999988899999999988765655555
Q ss_pred HHhhhcCCC
Q 005248 297 VAEMYVHGW 305 (706)
Q Consensus 297 a~~~~~eg~ 305 (706)
.+.+.+.|.
T Consensus 232 ~~~l~~~g~ 240 (246)
T PRK07329 232 QKLLKEHGI 240 (246)
T ss_pred HHHHHHcCC
Confidence 555444343
No 276
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.63 E-value=1.2e+02 Score=32.74 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHH
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 297 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla 297 (706)
..|.++++.++++|+.+-|=+|.--|+++ .++.+.+.|++.|-||+.+.+... |..+
T Consensus 68 ~~~~~ii~~~~~~g~~~~l~TNG~ll~~e------------------~~~~L~~~g~~~v~iSldg~~~e~----~d~~- 124 (358)
T TIGR02109 68 PDLVELVAHARRLGLYTNLITSGVGLTEA------------------RLDALADAGLDHVQLSFQGVDEAL----ADRI- 124 (358)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCccCCHH------------------HHHHHHhCCCCEEEEeCcCCCHHH----HHHh-
Confidence 35778999999999888887774334432 445566789999999999998642 1111
Q ss_pred HhhhcCCCCCcccccccccCCCCCCchhhHH-HHHHHhhcCCCceeEEecCCCCcccchH
Q 005248 298 AEMYVHGWDYPLHLGVTEAGEGEDGRMKSAI-GIGTLLQDGLGDTIRVSLTEPPEKEIDP 356 (706)
Q Consensus 298 ~~~~~eg~~YPLHLGVTEAG~g~~G~IKSav-GiG~LL~dGIGDTIRVSLT~dP~~EV~v 356 (706)
+ |.+|.-+.++ +|-.|..-|+.=+|++-+|..-..|++-
T Consensus 125 -r-------------------g~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~ 164 (358)
T TIGR02109 125 -A-------------------GYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPE 164 (358)
T ss_pred -c-------------------CCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Confidence 1 2233333322 4566777787766667777666666643
No 277
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=54.40 E-value=55 Score=36.95 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHh
Q 005248 143 READACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 218 (706)
Q Consensus 143 ~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~ 218 (706)
++.+.+.++++++ |-.+||++|=.| |++-+..+++ +++-+.|-|..+|.-.
T Consensus 290 ~D~~~~~~L~~~~---~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIt---------------------- 344 (425)
T TIGR01060 290 EDWEGWAELTKEL---GDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT---------------------- 344 (425)
T ss_pred ccHHHHHHHHHhc---CCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHH----------------------
Confidence 4566777777641 227999999765 6888888776 4999999999999833
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 219 VFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
...++++.|+++|+++= +.|.|.
T Consensus 345 ea~~ia~lA~~~Gi~~v--v~h~sg 367 (425)
T TIGR01060 345 ETLDAVELAKKAGYTAV--ISHRSG 367 (425)
T ss_pred HHHHHHHHHHHcCCcEE--EecCCc
Confidence 55778999999999743 446554
No 278
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.38 E-value=62 Score=33.62 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcCc
Q 005248 119 GTVEEVMRIADQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~--~-~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~k 184 (706)
..++++++..+.|...+.+-+- + .++.+.+..|++.+ |-++.|..|-|- ++.-|+..++.++.
T Consensus 85 ~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~~---g~~~~l~vDaN~~w~~~~A~~~~~~l~~ 152 (263)
T cd03320 85 AALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREAL---PADAKLRLDANGGWSLEEALAFLEALAA 152 (263)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHHHc---CCCCeEEEeCCCCCCHHHHHHHHHhhcc
Confidence 5668888888999999998773 2 56788899998853 557899999874 45556665555554
No 279
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=53.97 E-value=1.5e+02 Score=31.70 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=70.9
Q ss_pred HHHHHHHcCCCEEEEecCC---H-HHHHHHHHHHHhhccCCcCcceeeccCCCHH--------H-HHHHhhh-cCceeeC
Q 005248 123 EVMRIADQGADLVRITVQG---K-READACFEIKNSLVQKNYNIPLVADIHFAPS--------V-ALRVAEC-FDKIRVN 188 (706)
Q Consensus 123 Qi~~L~~aGceiVRvtv~~---~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~--------~-Al~a~~~-~~kiRIN 188 (706)
.....+..|.++|-|-..+ . +..+.+..+.+.++...-+.-+||..-.|++ . ...++++ ++.+=|-
T Consensus 72 aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlD 151 (235)
T PF04476_consen 72 AALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLD 151 (235)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEe
Confidence 4566778899999998753 2 4456677776666665555667765555543 2 2244454 6666665
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHH
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ 249 (706)
-..= ++..-|+... .+.+..+|+.|+++|.-. |. .|||...=+.
T Consensus 152 Ta~K-dg~~L~d~~~-------------~~~L~~Fv~~ar~~gL~~--aL-AGSL~~~di~ 195 (235)
T PF04476_consen 152 TADK-DGGSLFDHLS-------------EEELAEFVAQARAHGLMC--AL-AGSLRFEDIP 195 (235)
T ss_pred cccC-CCCchhhcCC-------------HHHHHHHHHHHHHccchh--hc-cccCChhHHH
Confidence 4432 2233455544 557888999999999876 55 8999764433
No 280
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=53.83 E-value=1.6e+02 Score=37.94 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHH-HHHHHhhccCCcCcceeeccC-CC--H--------HHHHHHhhh--
Q 005248 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADAC-FEIKNSLVQKNYNIPLVADIH-FA--P--------SVALRVAEC-- 181 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-tv~~~~~A~al-~~I~~~L~~~g~~iPLVADIH-F~--~--------~~Al~a~~~-- 181 (706)
.+.--+|+..|.++|+|++-+ |.+|..+|++. ..+++.+.+.+.++|++.=.- |+ . ..+..+++.
T Consensus 147 ~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~~~ 226 (1178)
T TIGR02082 147 VDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEHAG 226 (1178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhcCC
Confidence 556678999999999999999 79999998855 445555566778899887622 22 1 223333332
Q ss_pred cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc-CCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~-~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
++.|=||=+- +++ .+.++++...++ .+||=+=-|.| |+.. ...|-.+|+.|.+
T Consensus 227 ~~avGlNCs~--gP~----------------------~m~~~l~~l~~~~~~pi~vyPNAG-lP~~-~~~yd~~p~~~a~ 280 (1178)
T TIGR02082 227 IDMIGLNCAL--GPD----------------------EMRPHLKHLSEHAEAYVSCHPNAG-LPNA-FGEYDLTPDELAK 280 (1178)
T ss_pred CCEEEeCCCC--CHH----------------------HHHHHHHHHHHhcCceEEEEeCCC-CCCC-CCcccCCHHHHHH
Confidence 4444444321 111 334444444433 35554445998 4432 3567678999988
Q ss_pred HHHHHHH
Q 005248 261 SAFEFAR 267 (706)
Q Consensus 261 SAle~~~ 267 (706)
.+.+|++
T Consensus 281 ~~~~~~~ 287 (1178)
T TIGR02082 281 ALADFAA 287 (1178)
T ss_pred HHHHHHH
Confidence 8877764
No 281
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=53.70 E-value=1.1e+02 Score=33.12 Aligned_cols=80 Identities=21% Similarity=0.423 Sum_probs=53.7
Q ss_pred eeEEEceeecCCCCceE-EEeccCCCCCCHH-HHHHHHHHH-HHcCCCEEEEec--------------CCH-HHHHHHHH
Q 005248 89 RTVMVGNVAIGSEHPIR-VQTMTTNDTKDVA-GTVEEVMRI-ADQGADLVRITV--------------QGK-READACFE 150 (706)
Q Consensus 89 r~V~VG~v~IGG~~PI~-VQSMt~t~T~Dv~-atv~Qi~~L-~~aGceiVRvtv--------------~~~-~~A~al~~ 150 (706)
..|++|++.+|.+.|.+ +--|+--..+|.. .+..+++++ .+.|-++|==+. |+. +.-+.|.+
T Consensus 3 ~~vk~g~i~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~ 82 (279)
T COG2877 3 KVVKVGDIVIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQE 82 (279)
T ss_pred ceEEeCCEEecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHH
Confidence 57999999999987754 4445555545532 233344444 367888774332 333 44578899
Q ss_pred HHHhhccCCcCcceeeccCCCHH
Q 005248 151 IKNSLVQKNYNIPLVADIHFAPS 173 (706)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~ 173 (706)
||++ +.+|++.|+|-.+.
T Consensus 83 vK~e-----fgv~ilTDVHe~~q 100 (279)
T COG2877 83 VKEE-----FGVPILTDVHEPSQ 100 (279)
T ss_pred HHHH-----cCCceeeccCChhh
Confidence 9996 89999999998654
No 282
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=53.66 E-value=74 Score=34.83 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCCEEEEe----cCCH----------------------------------HHHHHHHHHHHhhccCCc
Q 005248 119 GTVEEVMRIADQGADLVRIT----VQGK----------------------------------READACFEIKNSLVQKNY 160 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvt----v~~~----------------------------------~~A~al~~I~~~L~~~g~ 160 (706)
.|+.+..+-+++|+++||-| +++. -.-+-|+++++. .
T Consensus 122 ~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~-----~ 196 (287)
T TIGR00343 122 RDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL-----G 196 (287)
T ss_pred CCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh-----C
Confidence 45677778889999999999 3331 012334455542 4
Q ss_pred Cccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 161 NIPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 161 ~iPLV--ADIHF-~~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
++|+| |--.. +|.-|-.+++. ++.|=+--+=+...+ ..-.-..|.+.+.+.++ -..+.+..+..|-+|.
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~e~s~~~~~~m~- 269 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSN-----PEKLAKAIVEATTHYDN-PEKLAEVSKDLGEAMK- 269 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccCC-
Confidence 69998 87777 78888788886 888876544332111 00012335555555433 5678899999999984
Q ss_pred ecCCCCCch
Q 005248 237 GTNHGSLSD 245 (706)
Q Consensus 237 GvN~GSL~~ 245 (706)
|.|-.+|+.
T Consensus 270 g~~~~~~~~ 278 (287)
T TIGR00343 270 GISISSISE 278 (287)
T ss_pred CCccccCCH
Confidence 999999865
No 283
>PLN02623 pyruvate kinase
Probab=53.50 E-value=2.9e+02 Score=33.18 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHh----hhcCceeeCCCCCCcch
Q 005248 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA----ECFDKIRVNPGNFADRR 196 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~----~~~~kiRINPGNig~~~ 196 (706)
.+-|+-..+.|.|+|=++ =.+.|+-+.++++.|.+.+-++.++|=|-= ..|++-+ +.+|.|=|-||.+|-.-
T Consensus 281 ~~di~f~~~~~vD~ialS--FVr~a~DV~~~r~~l~~~~~~~~iiakIEt--~eaVeNldeIl~g~DgImIgrgDLgvel 356 (581)
T PLN02623 281 WEDIKFGVENKVDFYAVS--FVKDAQVVHELKDYLKSCNADIHVIVKIES--ADSIPNLHSIITASDGAMVARGDLGAEL 356 (581)
T ss_pred HHHHHHHHHcCCCEEEEC--CCCCHHHHHHHHHHHHHcCCcceEEEEECC--HHHHHhHHHHHHhCCEEEECcchhhhhc
Confidence 333555567799996554 445566777777777777888999998753 3333222 25999999999998633
Q ss_pred hhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC--CCh-HHHHHHHHHHHHHHHHCC
Q 005248 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP-RGMVESAFEFARICRKLD 273 (706)
Q Consensus 197 k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg--dt~-eamVeSAle~~~i~e~~~ 273 (706)
. ++++.+..+.++++|+++|+|+ |+- -.+|+-+- .+| .|= ...+.-+...|
T Consensus 357 g---------------~~~v~~~qk~Ii~~~~~~gKpv--iva-----TQMLESMi~~~~PTRAE----v~Dva~av~dG 410 (581)
T PLN02623 357 P---------------IEEVPLLQEEIIRRCRSMGKPV--IVA-----TNMLESMIVHPTPTRAE----VSDIAIAVREG 410 (581)
T ss_pred C---------------cHHHHHHHHHHHHHHHHhCCCE--EEE-----CchhhhcccCCCCCchh----HHHHHHHHHcC
Confidence 2 2455566778999999999999 431 12333322 122 111 13455667889
Q ss_pred CCcEEEEE---ecCChhHHHHHHHHHHHhhhcC
Q 005248 274 FHNFLFSM---KASNPVVMVQAYRLLVAEMYVH 303 (706)
Q Consensus 274 f~~iviS~---KaSnv~~~i~ayrlla~~~~~e 303 (706)
++-+.+|. .---|...|+.-+.++.+.|+.
T Consensus 411 ~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~ 443 (581)
T PLN02623 411 ADAVMLSGETAHGKFPLKAVKVMHTVALRTEAT 443 (581)
T ss_pred CCEEEecchhhcCcCHHHHHHHHHHHHHHHHhh
Confidence 99999985 4446888999999999988753
No 284
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.29 E-value=2.2e+02 Score=30.14 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
.|.--.-.||.+..++|||+|=+-+..... +.+.++.+.-++ +.+-.++|+|=-.. +..|.+. ++=|=+|+=|.
T Consensus 117 kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~-~~l~~li~~a~~--lGl~~lvevh~~~E-~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 117 KDFIIDPYQIYEARAAGADAILLIVAALDD-EQLKELLDYAHS--LGLDVLVEVHDEEE-LERALKLGAPLIGINNRNL 191 (260)
T ss_pred eeecCCHHHHHHHHHcCCCEEEEEeccCCH-HHHHHHHHHHHH--cCCeEEEEeCCHHH-HHHHHHcCCCEEEECCCCc
Confidence 454444559999999999999887655322 344444443333 45888999996543 3455554 77677886665
No 285
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.24 E-value=3.4e+02 Score=32.42 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe----c------CCHHHHHHHHHHHHhhccCCcCcce---------eeccCCCHHH---
Q 005248 117 VAGTVEEVMRIADQGADLVRIT----V------QGKREADACFEIKNSLVQKNYNIPL---------VADIHFAPSV--- 174 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvt----v------~~~~~A~al~~I~~~L~~~g~~iPL---------VADIHF~~~~--- 174 (706)
++..+.=...|.++|.+.+=+. . -++..-+.|+.|++. .-++|| |+=-|+.-++
T Consensus 26 ~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~----~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 26 LDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKA----MPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHh----CCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3444455566778899988773 1 366778889999986 334665 5555543332
Q ss_pred -HHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCC-CCCchhHHHhh
Q 005248 175 -ALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMSYY 251 (706)
Q Consensus 175 -Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~-GSL~~~il~ry 251 (706)
...|+++ ++-+||=- .- . | -+++...|+.||++|.-.+..++. +| . +
T Consensus 102 ~v~~a~~~Gid~~rifd-----~l---n-----d----------~~~~~~ai~~ak~~G~~~~~~i~yt~~--p----~- 151 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-----AM---N-----D----------PRNLETALKAVRKVGAHAQGTLSYTTS--P----V- 151 (593)
T ss_pred HHHHHHhcCCCEEEEee-----eC---C-----c----------HHHHHHHHHHHHHcCCeEEEEEEEeeC--C----c-
Confidence 3355666 88899851 11 0 0 136788999999999977665532 11 1 1
Q ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccc
Q 005248 252 GDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (706)
Q Consensus 252 gdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHL 311 (706)
+| .+--++.++.+++.|-+ .|++|-+.=..+=+....|.+++.++ ++-|+|+
T Consensus 152 -~~----~~~~~~~a~~l~~~Gad--~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~~pi~~ 203 (593)
T PRK14040 152 -HT----LQTWVDLAKQLEDMGVD--SLCIKDMAGLLKPYAAYELVSRIKKR-VDVPLHL 203 (593)
T ss_pred -cC----HHHHHHHHHHHHHcCCC--EEEECCCCCCcCHHHHHHHHHHHHHh-cCCeEEE
Confidence 23 33445566777888987 66777765443333222233332221 4567664
No 286
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=53.18 E-value=46 Score=33.38 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhccCCcCcceeeccC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~a-l~~I~~~L~~~g~~iPLVADIH 169 (706)
|....+-.+...++.+.|++++-|++.+..+..+ +..|++... .+++.|+++|.+
T Consensus 42 ~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~-~~~~fpil~D~~ 97 (203)
T cd03016 42 TTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTG-VEIPFPIIADPD 97 (203)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcC-CCCceeEEECch
Confidence 4444455555666788999999999999876665 455666443 689999999965
No 287
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.08 E-value=1.6e+02 Score=33.49 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=40.0
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEec
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA 283 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~Ka 283 (706)
.++..++.|+- ||-+--=|++++++++.|-... .+.+++.++.+.+.||.+|.+.+=-
T Consensus 165 ~l~~l~~aGvn-RiSiGVQSf~d~vLk~lgR~~~--~~~~~~~i~~l~~~g~~~v~~DlI~ 222 (449)
T PRK09058 165 KADAALDAGAN-RFSIGVQSFNTQVRRRAGRKDD--REEVLARLEELVARDRAAVVCDLIF 222 (449)
T ss_pred HHHHHHHcCCC-EEEecCCcCCHHHHHHhCCCCC--HHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 46777778854 5555557788999999983211 2556677778889999877766643
No 288
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.99 E-value=1.1e+02 Score=34.43 Aligned_cols=102 Identities=11% Similarity=0.168 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHH--cCCCEEEEecCCH---HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCcee--eCC
Q 005248 118 AGTVEEVMRIAD--QGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNP 189 (706)
Q Consensus 118 ~atv~Qi~~L~~--aGceiVRvtv~~~---~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiR--INP 189 (706)
+...+.+..|.+ +|+|++=|-+-.- ...+.+++||+. --++++||====++..|..-+++ +|.|| |-|
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~----~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGp 182 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA----WPDKTICAGNVVTGEMVEELILSGADIVKVGIGP 182 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh----CCCCcEEEecccCHHHHHHHHHcCCCEEEEcccC
Confidence 356788889998 5999998877544 445556666664 22589998877778888877776 78776 889
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
|-+--.+..-- .= |- . -..+.+..+.|+++|+||
T Consensus 183 GSiCtTr~vtG-vG-----~P-Q----ltAV~~~a~~a~~~gvpi 216 (346)
T PRK05096 183 GSVCTTRVKTG-VG-----YP-Q----LSAVIECADAAHGLGGQI 216 (346)
T ss_pred CccccCccccc-cC-----hh-H----HHHHHHHHHHHHHcCCCE
Confidence 98844221000 00 00 0 113445666778888877
No 289
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=52.96 E-value=2.3e+02 Score=30.86 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEecC--C-HHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHHHHHhhhcCceeeC
Q 005248 115 KDVAGTVEEVMRIADQG-ADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKIRVN 188 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aG-ceiVRvtv~--~-~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~~~kiRIN 188 (706)
.+.+..++|+.+..+.| ..-+.+-+- + .++.+.++.+++.+ |.++.|..|-| |+..-|+.-++.++++ |
T Consensus 141 ~~~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v~avr~~~---g~~~~l~iDaN~~~~~~~A~~~~~~l~~~--~ 215 (365)
T cd03318 141 GDTERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHVEAIAKAL---GDRASVRVDVNQAWDESTAIRALPRLEAA--G 215 (365)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHHhc--C
Confidence 35577788999999999 999998863 3 45788888888863 45688999987 4556666655656554 2
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCch--hHHHhhC-C----Ch--HHHH
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD--RIMSYYG-D----SP--RGMV 259 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~--~il~ryg-d----t~--eamV 259 (706)
+-= ||+-.- .+.+..+-+.++..++||=.|=+.-++.+ ++++... | .+ -|=+
T Consensus 216 ~~~-------iEeP~~------------~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGi 276 (365)
T cd03318 216 VEL-------IEQPVP------------RENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGL 276 (365)
T ss_pred cce-------eeCCCC------------cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCH
Confidence 211 221110 01223344455567788766666555543 3333311 1 11 2336
Q ss_pred HHHHHHHHHHHHCCCCcEEEE-EecCChhHHHHHHHHHHHh
Q 005248 260 ESAFEFARICRKLDFHNFLFS-MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~iviS-~KaSnv~~~i~ayrlla~~ 299 (706)
..+++.+++|+++|.. +.++ +=.| .....+...|+..
T Consensus 277 t~~~~~~~~a~~~gi~-~~~~~~~~s--~i~~aa~~hlaaa 314 (365)
T cd03318 277 RRAQKVAAIAEAAGIA-LYGGTMLES--SIGTAASAHLFAT 314 (365)
T ss_pred HHHHHHHHHHHHcCCc-eeecCcchh--HHHHHHHHHHHHh
Confidence 7778888888888875 2232 2222 3344555555544
No 290
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=52.87 E-value=43 Score=36.48 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCEEEEec--------C-----CHHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cC
Q 005248 119 GTVEEVMRIADQGADLVRITV--------Q-----GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv--------~-----~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~ 183 (706)
.|.++...+.++|+|.|.+.. + +.-...++.++.+.++ .+++|+|||--.. +.-+.+|+.. ++
T Consensus 144 ~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~--~~~vpVIA~GGI~~~~di~kAla~GA~ 221 (325)
T cd00381 144 VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR--DYGVPVIADGGIRTSGDIVKALAAGAD 221 (325)
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 577889999999999999831 0 1123455666665443 3579999975543 4555555555 77
Q ss_pred ceee---------CCCCCCc
Q 005248 184 KIRV---------NPGNFAD 194 (706)
Q Consensus 184 kiRI---------NPGNig~ 194 (706)
.|=+ -||.+-.
T Consensus 222 ~VmiGt~fa~t~Es~g~~~~ 241 (325)
T cd00381 222 AVMLGSLLAGTDESPGEYIE 241 (325)
T ss_pred EEEecchhcccccCCCcEEE
Confidence 7766 5666643
No 291
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=52.84 E-value=2.5e+02 Score=31.48 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred HHHHHHHcC---CeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC-----CcEEEEEecCChhHHHHHHH
Q 005248 223 LVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF-----HNFLFSMKASNPVVMVQAYR 294 (706)
Q Consensus 223 vv~~ake~~---~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f-----~~iviS~KaSnv~~~i~ayr 294 (706)
+++..++.+ .-+-||+-+| ++++|++++-... ++...+.++.+.+.+. -++++-+---+..++.+.++
T Consensus 234 ll~~~~~~~~~~~~l~iglES~--s~~vLk~m~k~~~--~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~ 309 (430)
T TIGR01125 234 VIDLMAEGPKVLPYLDIPLQHA--SDRILKLMRRPGS--GEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLD 309 (430)
T ss_pred HHHHHhhCCcccCceEeCCCCC--CHHHHhhCCCCCC--HHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHH
Confidence 666666664 2456676655 6889998863111 3566777777878743 36677666666666666666
Q ss_pred HHHH
Q 005248 295 LLVA 298 (706)
Q Consensus 295 lla~ 298 (706)
++.+
T Consensus 310 fl~~ 313 (430)
T TIGR01125 310 FVEE 313 (430)
T ss_pred HHHh
Confidence 6654
No 292
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=52.54 E-value=18 Score=39.96 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCHHHHH----HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc--Ccceee
Q 005248 115 KDVAGTV----EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY--NIPLVA 166 (706)
Q Consensus 115 ~Dv~atv----~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~--~iPLVA 166 (706)
-|-++|+ +|....++||||+| .|+.=-=-.+..||+.|++.|+ ++|+++
T Consensus 134 vdND~Tl~~L~k~Avs~A~AGADiV---APSdMMDGrV~aIR~aLD~~G~~~~v~ImS 188 (320)
T cd04824 134 INNEASVKRLAEVALAYAKAGAHIV---APSDMMDGRVRAIKQALIQAGLGNKVSVMS 188 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEE---ecccccccHHHHHHHHHHHCCCccCCeeee
Confidence 4445555 56666799999998 3443333457889999999999 799986
No 293
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.37 E-value=67 Score=37.19 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|.|.++-.+++-.++.++++.++||+.|.|. .-++ +..+-++.||+ ..++||-.-.|-+.-+|. +|
T Consensus 153 ~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-----~~~~pi~~H~Hnt~GlA~An~laA 227 (468)
T PRK12581 153 AYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-----MTNLPLIVHTHATSGISQMTYLAA 227 (468)
T ss_pred EEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-----ccCCeEEEEeCCCCccHHHHHHHH
Confidence 4455666789999999999999999988876 1222 33444455554 367999888887777776 56
Q ss_pred hhh-cCcee--eCC
Q 005248 179 AEC-FDKIR--VNP 189 (706)
Q Consensus 179 ~~~-~~kiR--INP 189 (706)
+++ ++-|= |||
T Consensus 228 ieAGad~vD~ai~g 241 (468)
T PRK12581 228 VEAGADRIDTALSP 241 (468)
T ss_pred HHcCCCEEEeeccc
Confidence 665 66554 554
No 294
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.28 E-value=77 Score=36.61 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCc-Ccceee-ccCCCHHHHHHHhhh-cCcee--eCCCCC
Q 005248 121 VEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVA-DIHFAPSVALRVAEC-FDKIR--VNPGNF 192 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv---~~~~~A~al~~I~~~L~~~g~-~iPLVA-DIHF~~~~Al~a~~~-~~kiR--INPGNi 192 (706)
.+.+..|.++|+++|=|-+ ++....+.+++||+. + ++|++| |+= ++.-|..++++ +|.|| |-||-|
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~-----~p~~~v~agnv~-t~~~a~~l~~aGad~v~vgig~gsi 302 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL-----DPGVPIVAGNVV-TAEGTRDLVEAGADIVKVGVGPGAM 302 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH-----CCCCeEEeeccC-CHHHHHHHHHcCCCEEEECccCCcc
Confidence 4677889999999966643 345667778888875 5 599999 774 57888888887 99888 677766
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
=-- ..||..-+ -.+ ..+.++.+.|+++++|+
T Consensus 303 ctt------~~~~~~~~-p~~----~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 303 CTT------RMMTGVGR-PQF----SAVLECAAAARELGAHV 333 (479)
T ss_pred ccc------ccccCCch-hHH----HHHHHHHHHHHhcCCcE
Confidence 331 12333222 111 13444566666888876
No 295
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=52.10 E-value=18 Score=39.95 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCHHHHH----HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-Ccceee
Q 005248 114 TKDVAGTV----EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (706)
Q Consensus 114 T~Dv~atv----~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 166 (706)
.-|-++|+ +|....++||||+| .|+.=-=--++.||+.|++.|+ ++|+++
T Consensus 137 ~idND~Tl~~L~~~Al~~A~AGaDiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 191 (323)
T PRK09283 137 YVDNDETLELLAKQALSQAEAGADIV---APSDMMDGRVGAIREALDEAGFTDVPIMS 191 (323)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCEE---EcccccccHHHHHHHHHHHCCCCCCceee
Confidence 44555555 55666799999998 4443333467899999999999 699986
No 296
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=52.08 E-value=1.2e+02 Score=36.57 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHhhhcCCCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCC-
Q 005248 529 EELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLG- 607 (706)
Q Consensus 529 e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIG- 607 (706)
|.|+.|+..+.+-++ .| .|-.++..+++.-.+ ..+-|.++-+.=..--..+.--.+-...=|..|.|+.+
T Consensus 477 EqLa~LRaiPN~~V~--RP------aD~~Et~~aw~~Al~-~~~gPt~LiltRQnlp~l~~t~~~~~~kGaYvl~~~~~~ 547 (663)
T COG0021 477 EQLASLRAIPNLSVI--RP------ADANETAAAWKYALE-RKDGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSGGE 547 (663)
T ss_pred HHHHHhhccCCceeE--ec------CChHHHHHHHHHHHh-cCCCCeEEEEecCCCCccCCCccccccCccEEEeecCCC
Confidence 566666666655555 33 334455555544433 23445433321110000000001222222455666633
Q ss_pred -ceEEEeCCCCChhhHhHHHHHHHHHhhcccCCceEeccCCCCcccccHHHHHHHHHHHhCCCCCCeEEE
Q 005248 608 -DGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAI 676 (706)
Q Consensus 608 -DtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kte~ISCPsCGRTlfDLq~~~a~Ik~~t~hLkglkIAI 676 (706)
+-+.|-.++..++.-. -|.+.|++-+ .++..||||++ .+||-|+..-+- +-|.+=.+.+|||
T Consensus 548 ~pd~iliAtGSEV~lAv-~Aa~~L~~~~---~~vrVVS~P~~--~~fe~Q~~~Y~~-~vL~~~v~~rvai 610 (663)
T COG0021 548 DPDVILIATGSEVELAV-EAAKELEAEG---IKVRVVSMPSF--ELFEKQDEEYRE-SVLPGAVTARVAI 610 (663)
T ss_pred CCCEEEEecccHHHHHH-HHHHHHHhcC---CceEEEeccch--HHHHcCCHHHHH-hhccCCccceEEE
Confidence 2233334565554432 2456677666 57899999997 456666544322 2233222335666
No 297
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=51.96 E-value=88 Score=32.74 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 220 f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
+.++++.+|++|+.+-|=+| |++..+.+ .+++.. .+-+.||+|+.+.. .|+.+..
T Consensus 143 l~~l~~~~k~~g~~~~i~Tn-G~~~~~~~-----------------~~ll~~--~d~~~isl~~~~~~----~~~~~~g- 197 (295)
T TIGR02494 143 ALALLQACHERGIHTAVETS-GFTPWETI-----------------EKVLPY--VDLFLFDIKHLDDE----RHKEVTG- 197 (295)
T ss_pred HHHHHHHHHHcCCcEeeeCC-CCCCHHHH-----------------HHHHhh--CCEEEEeeccCChH----HHHHHhC-
Confidence 36899999999988888777 55543211 123332 34578999998753 2443321
Q ss_pred hhcCCCCCcccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC---CCcccchHHHHHH
Q 005248 300 MYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE---PPEKEIDPCRRLA 361 (706)
Q Consensus 300 ~~~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~dGIGDTIRVSLT~---dP~~EV~va~~l~ 361 (706)
. ....|.. +|-.|...|+==+||+.+.. +-.+|++--.+++
T Consensus 198 -----~--------------~~~~vl~--~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~ 241 (295)
T TIGR02494 198 -----V--------------DNEPILE--NLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFL 241 (295)
T ss_pred -----C--------------ChHHHHH--HHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHH
Confidence 0 1123433 45678888876667776654 2235565433333
No 298
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.57 E-value=2.7e+02 Score=29.17 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCHH-------HHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 005248 121 VEEVMRIADQGADLVRITVQGKR-------EADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~~-------~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~~~kiRINPGNi 192 (706)
.+.+.++++.||+-+=|-+.+++ .......+++.+.+.+.. .|+. +|=. + =||+++-
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~Hap---------y----~iNlas~ 78 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVL--VHAP---------Y----LINLASP 78 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCccee--ccCC---------e----eeecCCC
Confidence 45677888889999999887765 223344444433344433 1111 1210 1 1888875
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
-... .++--+.|+..++.|++.|.. .+.+..|+..+. ..+...+.+.+.++.+
T Consensus 79 ~~~~----------------r~~sv~~~~~~i~~A~~lga~-~vv~H~G~~~~~-------~~e~~~~~~~~~l~~l 131 (274)
T TIGR00587 79 DEEK----------------EEKSLDVLDEELKRCELLGIM-LYNFHPGSALKC-------SEEEGLDNLIESLNVV 131 (274)
T ss_pred CHHH----------------HHHHHHHHHHHHHHHHHcCCC-EEEECCCCCCCC-------CHHHHHHHHHHHHHHH
Confidence 3211 133346788899999999998 799999997521 2334445555555443
No 299
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=51.50 E-value=2.8e+02 Score=30.30 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHH-HcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHHHHHhhhcCce
Q 005248 116 DVAGTVEEVMRIA-DQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKI 185 (706)
Q Consensus 116 Dv~atv~Qi~~L~-~aGceiVRvtv~--~-~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~~~ki 185 (706)
+.+..++|+.+.. +.|..-+.+-+- + .++.+.+..+++.+ |-++.|..|-| |++.-|+..++.++++
T Consensus 141 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~---g~~~~l~~DaN~~~~~~~A~~~~~~l~~~ 213 (368)
T TIGR02534 141 DTDRDIAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKAL---GDRASVRVDVNAAWDERTALHYLPQLADA 213 (368)
T ss_pred CHHHHHHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhc---CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3444567777766 479999998763 3 35788888888863 45788999987 4566666666667664
No 300
>PRK14017 galactonate dehydratase; Provisional
Probab=51.45 E-value=99 Score=34.04 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHhhccCCcCcceeeccCCC--HHHHHHHhhh
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC 181 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~-----------~~~A~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al~a~~~ 181 (706)
.+.+..++|+.++.+.|...+.+-+.. .++.+.+..+|+. .|-++.|..|-+-. ..-|+..++.
T Consensus 123 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~---~g~~~~l~vDaN~~w~~~~A~~~~~~ 199 (382)
T PRK14017 123 DRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA---VGPEIGIGVDFHGRVHKPMAKVLAKE 199 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH---hCCCCeEEEECCCCCCHHHHHHHHHh
Confidence 367888999999999999999997631 3466777777764 35578999998754 4555555555
Q ss_pred cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCch--hHHHhhC--C--Ch
Q 005248 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD--RIMSYYG--D--SP 255 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~--~il~ryg--d--t~ 255 (706)
++.+. +.- ||+-.-. +....+-+.++..++||=.|=+.-|+.+ ++++ .+ | .+
T Consensus 200 l~~~~-----~~~----iEeP~~~------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~-~~a~d~v~~ 257 (382)
T PRK14017 200 LEPYR-----PMF----IEEPVLP------------ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLE-AGGVDIIQP 257 (382)
T ss_pred hcccC-----CCe----EECCCCc------------CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHH-cCCCCeEec
Confidence 65532 211 2221100 0122334445556677655555444432 1111 12 1 11
Q ss_pred ----HHHHHHHHHHHHHHHHCCCC
Q 005248 256 ----RGMVESAFEFARICRKLDFH 275 (706)
Q Consensus 256 ----eamVeSAle~~~i~e~~~f~ 275 (706)
-|=+..+++.+++|+..|..
T Consensus 258 d~~~~GGit~~~~ia~~A~~~gi~ 281 (382)
T PRK14017 258 DLSHAGGITECRKIAAMAEAYDVA 281 (382)
T ss_pred CccccCCHHHHHHHHHHHHHcCCe
Confidence 12266778888888888765
No 301
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.30 E-value=75 Score=34.38 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=42.6
Q ss_pred CcCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 159 NYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 159 g~~iPLVADIH-F~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+++|+.+|=+ ++..-+...++ +++-+.+.|...|.-. ...++.+.|.++|+++=
T Consensus 220 ~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit----------------------~~~~i~~~A~~~g~~~~ 277 (341)
T cd03327 220 ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGIT----------------------ELKKIAALAEAYGVPVV 277 (341)
T ss_pred cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeec
Confidence 37899999955 45555555554 5999999999998733 56789999999999863
No 302
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.27 E-value=1.2e+02 Score=31.21 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig 193 (706)
..|.+..++.++.|.+.|..++=||..+..+.++++.++++.. ++=+=|=-=.+..-|..|+++=.+.=+-|+ +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~aGA~FivSP~-~- 89 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAAGAQFIVSPG-F- 89 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHHT-SEEEESS---
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 3567888999999999999999999999999999999998732 122333445678888888887556668885 3
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
+ .++++.|+++|++.==|+
T Consensus 90 ~--------------------------~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 90 D--------------------------PEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp ---------------------------HHHHHHHHHHTSEEEEEE
T ss_pred C--------------------------HHHHHHHHHcCCcccCCc
Confidence 2 359999999999997777
No 303
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=51.14 E-value=20 Score=35.88 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHhhccCCcCcceeec
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------------GKREADACFEIKNSLVQKNYNIPLVAD 167 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~-------------~~~~A~al~~I~~~L~~~g~~iPLVAD 167 (706)
+.||..+-|.+.-..+. .+-+.+..+++.|+..|||-+. +...-+.|.++.+...+.|+.| |-|
T Consensus 5 G~~v~~~G~n~~w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild 81 (281)
T PF00150_consen 5 GKPVNWRGFNTHWYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILD 81 (281)
T ss_dssp SEBEEEEEEEETTSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEE
T ss_pred CCeEEeeeeecccCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEE
Confidence 56777777766533222 5556777889999999999866 2345577777777888888876 669
Q ss_pred cCCC
Q 005248 168 IHFA 171 (706)
Q Consensus 168 IHF~ 171 (706)
+|=.
T Consensus 82 ~h~~ 85 (281)
T PF00150_consen 82 LHNA 85 (281)
T ss_dssp EEES
T ss_pred eccC
Confidence 9987
No 304
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.98 E-value=3.8e+02 Score=29.58 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-------------CCHHHHHHHHHHHHhhccCCcCcceeeccCC-CHHHHHHHhh
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITV-------------QGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 180 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv-------------~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~Al~a~~ 180 (706)
-..+..++=+..|.++|.++|=++- +...+.+.++.+++... +..+-...+-.+ +.+-...|++
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK--QAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC--CCEEEEEeccCcccHHHHHHHHH
Confidence 4456666667789999999999951 22235566777766532 222222122111 2333446666
Q ss_pred h-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 181 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 181 ~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
+ ++-|||- .... + .+...+.++.||++|.-+.+..-.. +.-+++.+
T Consensus 100 ~gvd~iri~-----~~~~--------e----------~~~~~~~i~~ak~~G~~v~~~l~~a---------~~~~~e~l- 146 (337)
T PRK08195 100 AGVRVVRVA-----THCT--------E----------ADVSEQHIGLARELGMDTVGFLMMS---------HMAPPEKL- 146 (337)
T ss_pred cCCCEEEEE-----Eecc--------h----------HHHHHHHHHHHHHCCCeEEEEEEec---------cCCCHHHH-
Confidence 5 9999973 1111 0 1246889999999998876654211 22355544
Q ss_pred HHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHh
Q 005248 260 ESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~iviS~KaS----nv~~~i~ayrlla~~ 299 (706)
++.++.+++.|-+. |+++-| .|..+-+-++.+.+.
T Consensus 147 ---~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 147 ---AEQAKLMESYGAQC--VYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred ---HHHHHHHHhCCCCE--EEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 45677788888874 566655 456556666666555
No 305
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=50.62 E-value=48 Score=39.37 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=53.0
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|.|..+..+.+.-++.+++|.++||+.|.|. .-++ +..+-++.||+. +++|+-.-.|-+.-+|. +|
T Consensus 144 ~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-----~~ipi~~H~Hnt~Gla~an~laA 218 (596)
T PRK14042 144 CYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-----TGLPVHLHSHSTSGLASICHYEA 218 (596)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-----cCCEEEEEeCCCCCcHHHHHHHH
Confidence 3555778899999999999999999987776 2222 444556666664 67998777787777775 56
Q ss_pred hhh-cCcee
Q 005248 179 AEC-FDKIR 186 (706)
Q Consensus 179 ~~~-~~kiR 186 (706)
+++ ++-|=
T Consensus 219 ieaGad~iD 227 (596)
T PRK14042 219 VLAGCNHID 227 (596)
T ss_pred HHhCCCEEE
Confidence 665 66544
No 306
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=50.57 E-value=2.8e+02 Score=29.87 Aligned_cols=163 Identities=10% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhc--cCCcC-cceeeccCCC----HHHHHHHhhh-cC
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLV--QKNYN-IPLVADIHFA----PSVALRVAEC-FD 183 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~a-l~~I~~~L~--~~g~~-iPLVADIHF~----~~~Al~a~~~-~~ 183 (706)
++.|.+-.-.-++.-++.++-++=-..|+.-.... ++.+....+ ++.++ +|++ +|.| ......|++. ++
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~--lhlDH~~~~e~i~~ai~~Gf~ 99 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVA--LHLDHGSSYESCIKAIKAGFS 99 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEE--EECCCCCCHHHHHHHHHcCCC
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE--EecCCCCCchhHHH--hhCCChHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGSLSDRIMS--YYGDSPRGMV 259 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR--IGvN~GSL~~~il~--rygdt~eamV 259 (706)
.|=|-.-+....+. -+..+++++.|+.+|+++- ||. .|.-++.+.. ..-.+|+...
T Consensus 100 sVmid~s~l~~~en-------------------i~~t~~v~~~a~~~gv~Ve~ElG~-~gg~ed~~~g~~~~~t~~eea~ 159 (282)
T TIGR01859 100 SVMIDGSHLPFEEN-------------------LALTKKVVEIAHAKGVSVEAELGT-LGGIEDGVDEKEAELADPDEAE 159 (282)
T ss_pred EEEECCCCCCHHHH-------------------HHHHHHHHHHHHHcCCEEEEeeCC-CcCccccccccccccCCHHHHH
Q ss_pred HHHHHHHHHHHHCCCCcEEEE------EecCChhHHHHHHHHHHHhhhcCCCCCcc
Q 005248 260 ESAFEFARICRKLDFHNFLFS------MKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~iviS------~KaSnv~~~i~ayrlla~~~~~eg~~YPL 309 (706)
+.. ++.|-+-+.+| +-...+..-++-.+.+.++ .+-||
T Consensus 160 ~f~-------~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~-----~~iPl 203 (282)
T TIGR01859 160 QFV-------KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL-----TNIPL 203 (282)
T ss_pred HHH-------HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH-----hCCCE
No 307
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=50.48 E-value=1.7e+02 Score=32.37 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcC--CCEEEEec---CCHHHHHHHHHHHHhhccCCcCcc-eeec-cCCCHHHHHHHhhh-cCceeeC-
Q 005248 118 AGTVEEVMRIADQG--ADLVRITV---QGKREADACFEIKNSLVQKNYNIP-LVAD-IHFAPSVALRVAEC-FDKIRVN- 188 (706)
Q Consensus 118 ~atv~Qi~~L~~aG--ceiVRvtv---~~~~~A~al~~I~~~L~~~g~~iP-LVAD-IHF~~~~Al~a~~~-~~kiRIN- 188 (706)
+...+.+..|.++| +|+|=+-+ .+..-.+.++.||+. ++.| +|+= + -++..|..++++ ++.|++-
T Consensus 93 ~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-----~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 93 ACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-----LPDSFVIAGNV-GTPEAVRELENAGADATKVGI 166 (321)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-----CCCCEEEEecC-CCHHHHHHHHHcCcCEEEECC
Confidence 45678899999999 78877765 336667778888885 6667 5554 4 489999999997 9999965
Q ss_pred -CCCC
Q 005248 189 -PGNF 192 (706)
Q Consensus 189 -PGNi 192 (706)
||-+
T Consensus 167 G~G~~ 171 (321)
T TIGR01306 167 GPGKV 171 (321)
T ss_pred CCCcc
Confidence 6765
No 308
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=50.38 E-value=20 Score=39.57 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-Ccceee
Q 005248 114 TKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (706)
Q Consensus 114 T~Dv~atv~----Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 166 (706)
.-|-++|++ |....++||||+| .|+.=-=-.+..||+.|++.|+ ++|+++
T Consensus 139 ~i~ND~Tl~~L~~~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 193 (322)
T PRK13384 139 EVDNDATVENLVKQSVTAAKAGADML---APSAMMDGQVKAIRQGLDAAGFEHVAILA 193 (322)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCeE---ecccccccHHHHHHHHHHHCCCCCCceee
Confidence 345566655 5566799999998 4443333467899999999999 699976
No 309
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=50.38 E-value=1.9e+02 Score=30.13 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=57.5
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~ 181 (706)
.||.+|-+ ..|.++.++|.++|.+.+-. +-|-+|--. +.++.|+. |.+.|+++-+=+ =|+..-|+.|+++
T Consensus 52 g~vs~qv~----~~~~~~mi~~a~~l~~~~~~-i~iKIP~T~--~Gl~A~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~a 121 (213)
T TIGR00875 52 GPVSAETI----SLDAEGMVEEAKELAKLAPN-IVVKIPMTS--EGLKAVKI-LKKEGIKTNVTL--VFSAAQALLAAKA 121 (213)
T ss_pred CcEEEEEe----eCCHHHHHHHHHHHHHhCCC-eEEEeCCCH--HHHHHHHH-HHHCCCceeEEE--ecCHHHHHHHHHc
Confidence 48999985 45799999999999999865 667888665 33666654 666677665544 5888999999886
Q ss_pred -cCceeeCCC
Q 005248 182 -FDKIRVNPG 190 (706)
Q Consensus 182 -~~kiRINPG 190 (706)
++=|-..=|
T Consensus 122 Ga~yispyvg 131 (213)
T TIGR00875 122 GATYVSPFVG 131 (213)
T ss_pred CCCEEEeecc
Confidence 654444333
No 310
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.27 E-value=47 Score=37.10 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcCcceee-ccCCCHHHHHHHhhh-cCceee
Q 005248 119 GTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRV 187 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~~--------~A~al~~I~~~L~~~g~~iPLVA-DIHF~~~~Al~a~~~-~~kiRI 187 (706)
.+.+.+..|.++|+++|=+.-.+.. ....+.+++++ .++|+|+ | -++++.|..++++ +|.|.+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-----~~ipVIaG~-V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-----LDVPVIVGG-CVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEE
Confidence 3567778889999999988543221 23445555443 5799998 7 6899999999997 999886
No 311
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=50.10 E-value=3.1e+02 Score=30.63 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh---cCceee--
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC---FDKIRV-- 187 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~---~~kiRI-- 187 (706)
..++.+.-+++|+.|.+.|..-+.++-++.-.- |.+ +- +.+ .-.-.+.++.. +..+|+
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~y-------------g~d--~~-~~~-~l~~Ll~~l~~~~g~~~i~~~~ 228 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQNVGAY-------------GKD--LK-GET-NLADLLRELSKIDGIERIRFGS 228 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeeccccc-------------cCC--CC-CCc-CHHHHHHHHhcCCCCCEEEECC
Confidence 457789999999999999988888886543210 000 00 000 00111122211 233554
Q ss_pred -CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCCChHHHHHHHH
Q 005248 188 -NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 188 -NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygdt~eamVeSAl 263 (706)
+|.++- .++++..++.+ .-+=||+- |.|+++|++++-.. -++...
T Consensus 229 ~~p~~i~---------------------------~ell~~m~~~~~~~~~l~igiE--S~s~~vLk~m~R~~--~~~~~~ 277 (429)
T TIGR00089 229 SHPDDVT---------------------------DDLIELIAENPKVCKHLHLPVQ--SGSDRILKRMNRKY--TREEYL 277 (429)
T ss_pred CChhhcC---------------------------HHHHHHHHhCCCccCceeeccc--cCChHHHHhCCCCC--CHHHHH
Confidence 454441 13566666664 23445554 55688999886211 134455
Q ss_pred HHHHHHHHCC--C---CcEEEEEecCChhHHHHHHHHHHH
Q 005248 264 EFARICRKLD--F---HNFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 264 e~~~i~e~~~--f---~~iviS~KaSnv~~~i~ayrlla~ 298 (706)
+.++.+.+.+ + -++++-+---+..+..+..+++.+
T Consensus 278 ~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~ 317 (429)
T TIGR00089 278 DIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEE 317 (429)
T ss_pred HHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHh
Confidence 6667777776 3 356666666666666666666554
No 312
>PLN02489 homocysteine S-methyltransferase
Probab=49.99 E-value=87 Score=34.37 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcCcceeeccCC
Q 005248 120 TVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHF 170 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF 170 (706)
--.|+..|.++|+|++-+ |+|+.+|++++-+.-+ +.+.++|++.=+.|
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~---~~~~~~p~~iS~t~ 217 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLE---EENIKIPAWISFNS 217 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHH---HcCCCCeEEEEEEe
Confidence 356788899999999999 8999999988765544 33456887655544
No 313
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=49.98 E-value=25 Score=32.08 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=43.9
Q ss_pred HHHHHHhhccc----CCceEeccCCCCcccccHHHHHHHHHHHhCCC-CCCeEEEEcccccCccccc
Q 005248 627 FNLLQGCRMRN----TKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMA 688 (706)
Q Consensus 627 ~~ILqa~rlR~----~kte~ISCPsCGRTlfDLq~~~a~Ik~~t~hL-kglkIAIMGCIVNGPGEma 688 (706)
.++|++.|.-. ...++|--=||+=|.==-++...+|++.-+.- |+.+|.|+||.+.--+|.-
T Consensus 20 ~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l 86 (98)
T PF00919_consen 20 ASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEEL 86 (98)
T ss_pred HHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHH
Confidence 46677766643 24577878899988765666666676644444 4799999999999877643
No 314
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.73 E-value=2.2e+02 Score=29.18 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcc--eeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP--LVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iP--LVADIHF~~~~Al~a~~~-~~kiRINPGN 191 (706)
.|.+..++.+..+.+.|..++=||..+....+.+..++++ ++.| +=|=-=++..-+..|.++ ++-+ +-|+.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~-----~~~~~~iGaGTV~~~~~~~~a~~aGA~fi-vsp~~ 92 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKA-----LGDRALIGAGTVLSPEQVDRLADAGGRLI-VTPNT 92 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH-----cCCCcEEeEEecCCHHHHHHHHHcCCCEE-ECCCC
Confidence 4788999999999999999999999999999999999986 5433 212223456666666665 4322 23432
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
= .++++.|++++.++=+|+
T Consensus 93 ~----------------------------~~v~~~~~~~~~~~~~G~ 111 (206)
T PRK09140 93 D----------------------------PEVIRRAVALGMVVMPGV 111 (206)
T ss_pred C----------------------------HHHHHHHHHCCCcEEccc
Confidence 1 358999999999998886
No 315
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=49.70 E-value=59 Score=38.45 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=52.4
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|||.++-.|.+.-++-++++.++||+.+++. .-++ +..+-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 139 ~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~-----~~~pi~~H~Hnt~Gla~An~laA 213 (582)
T TIGR01108 139 SYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKR-----FGLPVHLHSHATTGMAEMALLKA 213 (582)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-----CCCceEEEecCCCCcHHHHHHHH
Confidence 6666555789999999999999999998886 1222 344555666654 56898777777777776 56
Q ss_pred hhh-cCcee
Q 005248 179 AEC-FDKIR 186 (706)
Q Consensus 179 ~~~-~~kiR 186 (706)
+++ ++-|=
T Consensus 214 veaGa~~vd 222 (582)
T TIGR01108 214 IEAGADGID 222 (582)
T ss_pred HHhCCCEEE
Confidence 665 66554
No 316
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=49.58 E-value=1.9e+02 Score=33.40 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=84.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 005248 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (706)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINP 189 (706)
|..+..|++.-++.++...++|+|- +-|.--.-.|.+||+.+.+ .+++|+=. .- -|..+.++ ..|-+
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADt----iMDLStggdl~~iR~~il~-~s~vpvGT-VP-iYqa~~~~---~~k~~--- 135 (431)
T PRK13352 69 TSSDISDIEEELEKAKVAVKYGADT----IMDLSTGGDLDEIRRAIIE-ASPVPVGT-VP-IYQAAVEA---ARKYG--- 135 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHH-cCCCCCcC-hh-HHHHHHHH---HhcCC---
Confidence 6688999999999999999999994 3444455678888887765 34454300 00 04444443 33322
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHh-----------hHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEE-----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRG 257 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~-----------~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~ea 257 (706)
++.+ .|.+++-+.+++=-+ --+..++.+|+.++-+-|=--.||+=-..|...+. .|
T Consensus 136 -~~~~---------mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENP-- 203 (431)
T PRK13352 136 -SVVD---------MTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENP-- 203 (431)
T ss_pred -Chhh---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCc--
Confidence 3322 233444444432111 13456777777777776666677776666665552 33
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEe
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMK 282 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~K 282 (706)
+-|-==+.++||++ +|+.+|+=
T Consensus 204 lye~fD~lLeI~~~---yDVtlSLG 225 (431)
T PRK13352 204 LYEHFDYLLEILKE---YDVTLSLG 225 (431)
T ss_pred hHHHHHHHHHHHHH---hCeeeecc
Confidence 44444445566666 45677763
No 317
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.56 E-value=44 Score=31.72 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=42.6
Q ss_pred HhhHHHHHHHHHHcCCeE---EEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE
Q 005248 217 EEVFSPLVEKCKKYGRAV---RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (706)
Q Consensus 217 ~~~f~~vv~~ake~~~~I---RIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~ 281 (706)
.+.+.++.+.++++|+.| =...++.+......+..-. -+..++...+.+++|+++|-..+++..
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~ 92 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEEC
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecC
Confidence 556778999999999983 2344444433221111111 245678888899999999999988873
No 318
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=49.44 E-value=2.3e+02 Score=32.73 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=86.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 005248 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (706)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINP 189 (706)
|..+..|++.-++.++...++|+|-| -|..-.-.+.+||+.+.+ .+++|+=. . =-|.++.++.+
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADti----MDLStGgdl~~iR~~il~-~s~vpvGT-V-PiYqa~~~~~~--------- 132 (423)
T TIGR00190 69 TSADTSDIEEEVEKALIAIKYGADTV----MDLSTGGDLDEIRKAILD-AVPVPVGT-V-PIYQAAEKVHG--------- 132 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeE----eeccCCCCHHHHHHHHHH-cCCCCccC-c-cHHHHHHHhcC---------
Confidence 66888999999999999999999943 444445567888887665 34555300 0 00444443321
Q ss_pred CCCCcchhhccccccchHHHHHHHhhHHh-----------hHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHH
Q 005248 190 GNFADRRAQFEQLEYTDDEYQKELQHIEE-----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRG 257 (706)
Q Consensus 190 GNig~~~k~F~~~~YtdeeY~~El~~I~~-----------~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~ea 257 (706)
++.+ .|.+++-+.+++=-+ --++.++..|+.++-+-|=--.||+=-..|...+. .|
T Consensus 133 -~~~~---------mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENP-- 200 (423)
T TIGR00190 133 -AVED---------MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENP-- 200 (423)
T ss_pred -Chhh---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCc--
Confidence 3322 344444444433211 13567888888888887777778887777766663 44
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEe
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMK 282 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~K 282 (706)
+-|-==+-++||++ +|+.+|+=
T Consensus 201 lye~fD~lLeI~~~---yDVtlSLG 222 (423)
T TIGR00190 201 LYKNFDYILEIAKE---YDVTLSLG 222 (423)
T ss_pred hHHHHHHHHHHHHH---hCeeeecc
Confidence 34443445566666 45678763
No 319
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=49.41 E-value=1.9e+02 Score=29.19 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.8
Q ss_pred HHcCCCEEEEecCCHHHHHHHHHH
Q 005248 128 ADQGADLVRITVQGKREADACFEI 151 (706)
Q Consensus 128 ~~aGceiVRvtv~~~~~A~al~~I 151 (706)
.++||+ .++|-+.+||..+.+.
T Consensus 44 ~~~G~~--~f~va~l~Ea~~lr~~ 65 (222)
T cd00635 44 IEAGQR--DFGENRVQEALDKAEE 65 (222)
T ss_pred HHcCCc--ccCCCcHHHHHHHHHH
Confidence 478988 6999999999998764
No 320
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=49.38 E-value=2.3e+02 Score=29.32 Aligned_cols=138 Identities=12% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-----CHHHHH-HHhhh-cCce
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-----APSVAL-RVAEC-FDKI 185 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-----~~~~Al-~a~~~-~~ki 185 (706)
|..|.+..++ .+.+.|.++.=+-+-+.--..-=.++.+.|++. +.++++|+|| ++..+. .+.++ ++-+
T Consensus 10 D~~~~~~~l~---~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~i 84 (230)
T PRK00230 10 DFPSKEEALA---FLDQLDPAVLFVKVGMELFTAGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMV 84 (230)
T ss_pred CCCCHHHHHH---HHHhcCCcccEEEEcHHHHHhcCHHHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEE
Confidence 6666665544 555567665555555432221112333334444 4689999999 554433 34454 6666
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC-CCCCchhHHHhhCCChHHHHHHHHH
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN-~GSL~~~il~rygdt~eamVeSAle 264 (706)
=+.+ .++ .+.++..++.+++++.+.=+||- -.|++.+-+..-|. ...+-+..+.
T Consensus 85 tvH~--~ag----------------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~-~~~~~~~v~~ 139 (230)
T PRK00230 85 NVHA--SGG----------------------PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGI-NLSLEEQVLR 139 (230)
T ss_pred EEcc--cCC----------------------HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcC-CCCHHHHHHH
Confidence 6665 222 12566677777765334446654 56666443333232 2234556677
Q ss_pred HHHHHHHCCCCcEEEE
Q 005248 265 FARICRKLDFHNFLFS 280 (706)
Q Consensus 265 ~~~i~e~~~f~~iviS 280 (706)
.++++.+.|-+=+|.|
T Consensus 140 ~a~~a~~~g~dgvv~~ 155 (230)
T PRK00230 140 LAKLAQEAGLDGVVCS 155 (230)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 8888899988777766
No 321
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=49.37 E-value=45 Score=35.13 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=92.0
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHH
Q 005248 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRV 178 (706)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~-~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a 178 (706)
...|+-|-=|...+ -..+..+++|||+++=+-+- +..-.+.+..||+. |+. |=+=|||.-=+++
T Consensus 60 t~~p~DvHLMV~~p-------~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~----G~k----aGv~lnP~Tp~~~ 124 (220)
T COG0036 60 TDLPLDVHLMVENP-------DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKEL----GVK----AGLVLNPATPLEA 124 (220)
T ss_pred CCCceEEEEecCCH-------HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHc----CCe----EEEEECCCCCHHH
Confidence 46788888886554 56888999999999988776 33445666777763 554 3344777666666
Q ss_pred hhh----cCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhh
Q 005248 179 AEC----FDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY 251 (706)
Q Consensus 179 ~~~----~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ry 251 (706)
++. +|.|= +||| +|.. +|.... + +|++++-+..++++ .+.|-|..| ++.
T Consensus 125 i~~~l~~vD~VllMsVnPG-fgGQ--~Fi~~~---------l----~Ki~~lr~~~~~~~-~~~IeVDGG-I~~------ 180 (220)
T COG0036 125 LEPVLDDVDLVLLMSVNPG-FGGQ--KFIPEV---------L----EKIRELRAMIDERL-DILIEVDGG-INL------ 180 (220)
T ss_pred HHHHHhhCCEEEEEeECCC-Cccc--ccCHHH---------H----HHHHHHHHHhcccC-CeEEEEeCC-cCH------
Confidence 653 56654 7998 3442 355332 3 34455666666666 999999655 333
Q ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHH
Q 005248 252 GDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 297 (706)
Q Consensus 252 gdt~eamVeSAle~~~i~e~~~f~~iviS---~KaSnv~~~i~ayrlla 297 (706)
+.++.|.+.|-+-+|.- -+..|....++..|...
T Consensus 181 ------------~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~ 217 (220)
T COG0036 181 ------------ETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL 217 (220)
T ss_pred ------------HHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHh
Confidence 35666777776655542 23344555566555543
No 322
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.28 E-value=81 Score=34.49 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC--CCHHHHHHHhhhcCce
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKI 185 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~~~ki 185 (706)
.|.+..++|+.++.+.|-..+.+-+ .+.+..+|+. .|-++.|..|-| |+..-|+..++.++.+
T Consensus 125 ~~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v~avre~---~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~ 189 (361)
T cd03322 125 RDIPELLEAVERHLAQGYRAIRVQL-----PKLFEAVREK---FGFEFHLLHDVHHRLTPNQAARFGKDVEPY 189 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeCH-----HHHHHHHHhc---cCCCceEEEECCCCCCHHHHHHHHHHhhhc
Confidence 4678888999999999999999976 5666667663 355789999986 5666677666666654
No 323
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=49.22 E-value=90 Score=34.08 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=44.8
Q ss_pred cCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 160 YNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 160 ~~iPLVADIH-F~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
+++|+.+|=+ |+..-+...++ ++|-+.+.+...|.-. ...++.+.|+.+|+++=+
T Consensus 234 ~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit----------------------~~~~ia~~A~a~gi~~~~ 291 (352)
T cd03328 234 AGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVT----------------------GFLQAAALAAAHHVDLSA 291 (352)
T ss_pred CCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeecc
Confidence 6699999966 46666666665 5999999999998733 567899999999999866
Q ss_pred e
Q 005248 237 G 237 (706)
Q Consensus 237 G 237 (706)
+
T Consensus 292 h 292 (352)
T cd03328 292 H 292 (352)
T ss_pred C
Confidence 5
No 324
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=49.20 E-value=1.4e+02 Score=36.47 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=80.9
Q ss_pred HHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHhhccCCcC-----cceeeccCCCHHHHHHHhh---hcCceeeCCCC
Q 005248 121 VEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAE---CFDKIRVNPGN 191 (706)
Q Consensus 121 v~Qi~~L~-~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~-----iPLVADIHF~~~~Al~a~~---~~~kiRINPGN 191 (706)
++-|.+.. ++|+.=|||-+|-...++-+..+++.++..|+. +|+++=| =.|..++.+-+ .+|-+=|-|..
T Consensus 616 lraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mI-Etp~av~~~d~Ia~~vDfisIGtnD 694 (782)
T TIGR01418 616 CRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMC-EVPSNALLADEFAKEFDGFSIGSND 694 (782)
T ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEE-CcHHHHHHHHHHHHhCCEEEECchH
Confidence 44444544 668888999999888888888888877766653 3333322 23455443222 38888899987
Q ss_pred CCc------chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHH
Q 005248 192 FAD------RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (706)
Q Consensus 192 ig~------~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~ 265 (706)
+.- +...+-. .-|+.....+.+.++.+++.|+++|+|+ |+ .|.... ..| +.
T Consensus 695 Ltq~~lg~dR~n~~~~-----~~~~~~hPaV~~~i~~vi~~a~~~g~~v--gi-cge~~~-------~~p--------~~ 751 (782)
T TIGR01418 695 LTQLTLGVDRDSGLVA-----HLFDERNPAVLRLIEMAIKAAKEHGKKV--GI-CGQAPS-------DYP--------EV 751 (782)
T ss_pred HHHHHhCccCCchhhc-----ccCCCCCHHHHHHHHHHHHHHHhcCCeE--EE-eCCCCC-------CCH--------HH
Confidence 642 0000000 0122233445667788999999999997 55 443210 012 35
Q ss_pred HHHHHHCCCCcEEEE
Q 005248 266 ARICRKLDFHNFLFS 280 (706)
Q Consensus 266 ~~i~e~~~f~~iviS 280 (706)
+..+-.+||+.+.++
T Consensus 752 ~~~l~~~G~~~ls~~ 766 (782)
T TIGR01418 752 VEFLVEEGIDSISLN 766 (782)
T ss_pred HHHHHHcCCCEEEEC
Confidence 567778899866543
No 325
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.02 E-value=97 Score=31.12 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhcc--CCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ--KNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~--~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGN 191 (706)
.|.+..++.+..+.++|..+|-++..+..+.+.+..+++.... .|..+. ++..-+..|++. ++-|= -|.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtv------l~~d~~~~A~~~gAdgv~--~p~ 92 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTI------LTLEDLEEAIAAGAQFCF--TPH 92 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEE------EcHHHHHHHHHcCCCEEE--CCC
Confidence 4788889999999999999999999998888888888874111 111222 333455555554 44331 122
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
++ .++++.|++++++.-||+
T Consensus 93 ~~---------------------------~~~~~~~~~~~~~~i~G~ 112 (187)
T PRK07455 93 VD---------------------------PELIEAAVAQDIPIIPGA 112 (187)
T ss_pred CC---------------------------HHHHHHHHHcCCCEEcCc
Confidence 22 347889999999988884
No 326
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=48.95 E-value=83 Score=34.60 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLV 297 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~iviS~----KaSnv~~~i~ayrlla 297 (706)
.++..|+.|+- ||-+.-=|++++++.+.|- .. ++.+++-++.+++.||.+|.+-+ ---+...+.+..+.+.
T Consensus 105 ~l~~l~~~G~n-rislGvQS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~ 180 (370)
T PRK06294 105 YIRALALTGIN-RISIGVQTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAI 180 (370)
T ss_pred HHHHHHHCCCC-EEEEccccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 46788888864 6666667888999999983 22 33455566677889998665554 3334444444444433
No 327
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=48.71 E-value=84 Score=33.92 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhh---C--------CC----------hHHHHHHHHHHHHHHHHCCCCc
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY---G--------DS----------PRGMVESAFEFARICRKLDFHN 276 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ry---g--------dt----------~eamVeSAle~~~i~e~~~f~~ 276 (706)
..+.++++.++++|..+=|=+| |.|-++.+.++ + |. .++-.+.+++.++.+.+.|+.
T Consensus 87 pdl~eiv~~~~~~g~~v~l~TN-G~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~- 164 (318)
T TIGR03470 87 PEIDEIVRGLVARKKFVYLCTN-ALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR- 164 (318)
T ss_pred ccHHHHHHHHHHcCCeEEEecC-ceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCc-
Confidence 4577899999999988888888 55544434433 2 10 134567888999999998884
Q ss_pred EEEEE---ecCChhHHHHHHHHHHHh
Q 005248 277 FLFSM---KASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 277 iviS~---KaSnv~~~i~ayrlla~~ 299 (706)
+.+++ ...|...+.+.++++.+.
T Consensus 165 v~v~~tv~~~~n~~ei~~~~~~~~~l 190 (318)
T TIGR03470 165 VTTNTTLFNDTDPEEVAEFFDYLTDL 190 (318)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHHc
Confidence 33332 557788888877777543
No 328
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=48.55 E-value=1.6e+02 Score=30.11 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCC---------
Q 005248 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG--------- 190 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPG--------- 190 (706)
+.++|....+. .+..+++.+.++.+.+.++..+. ++ -+||||+
T Consensus 75 ~~~~l~~a~~~--~~~~i~vDs~~el~~l~~~~~~~-------~v-------------------~lRin~~~~~~~~~~~ 126 (251)
T PF02784_consen 75 SDEELEEAIEN--GVATINVDSLEELERLAELAPEA-------RV-------------------GLRINPGIGAGSHPKI 126 (251)
T ss_dssp -HHHHHHHHHH--TESEEEESSHHHHHHHHHHHCTH-------EE-------------------EEEBE-SESTTTSCHH
T ss_pred cHHHHHHHHhC--CceEEEeCCHHHHHHHhccCCCc-------ee-------------------eEEEeecccccccccc
Confidence 34444444444 33455677777766666666531 11 2799999
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE-EEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV-RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I-RIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
+.|....+|--.. ++.+.++++.+++.++.+ .|=+-.||=..+. +.| ...++.+++.++-+
T Consensus 127 ~~g~~~skFGi~~-------------~~~~~~~l~~~~~~~l~l~GlH~H~gS~~~~~-~~~----~~~~~~~~~~~~~~ 188 (251)
T PF02784_consen 127 STGGKDSKFGIDI-------------EEEAEEALERAKELGLRLVGLHFHVGSQILDA-EAF----RQAIERLLDLAEEL 188 (251)
T ss_dssp CSSSHTSSSSBEG-------------GGHHHHHHHHHHHTTEEEEEEEE-HCSSBSSC-HHH----HHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCcCh-------------HHHHHHHHHhhccceEEEEEeeeeeccCCcch-HHH----HHHHHHHHHHHhhh
Confidence 3332223454332 112677889999998222 2222234422110 111 34567777777766
Q ss_pred H-HCCCC
Q 005248 270 R-KLDFH 275 (706)
Q Consensus 270 e-~~~f~ 275 (706)
. ++||.
T Consensus 189 ~~~~g~~ 195 (251)
T PF02784_consen 189 KEELGFE 195 (251)
T ss_dssp HHHTTTT
T ss_pred ccccccc
Confidence 5 88776
No 329
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=48.51 E-value=56 Score=36.90 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 291 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ 291 (706)
-++..++.|+- ||..+-=|++++++.+-|- .....+..|++. +.+.||.+|.+-+=--=|..+.+
T Consensus 139 ~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~---~~~~g~~~in~DLIyglP~QT~~ 204 (416)
T COG0635 139 KFKALKEAGVN-RISLGVQSFNDEVLKALGRIHDEEEAKEAVEL---ARKAGFTSINIDLIYGLPGQTLE 204 (416)
T ss_pred HHHHHHHcCCC-EEEeccccCCHHHHHHhcCCCCHHHHHHHHHH---HHHcCCCcEEEEeecCCCCCCHH
Confidence 35788999999 9999999999999999994 444555555555 45599988877764443433333
No 330
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.34 E-value=55 Score=37.47 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=54.2
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCC-HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~-~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|.|..+-.|.+.-++-++++.++||+.|++. .-+ .+.++-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~-----~~~pi~~H~Hnt~GlA~AN~laA 218 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA-----VTVPLEVHTHATSGIAEMTYLKA 218 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCcHHHHHHHH
Confidence 4444455788999999999999999998887 122 2455666677764 56898777777777776 56
Q ss_pred hhh-cCcee--eCC
Q 005248 179 AEC-FDKIR--VNP 189 (706)
Q Consensus 179 ~~~-~~kiR--INP 189 (706)
+++ ++-|= |||
T Consensus 219 ieaGad~vD~sv~g 232 (448)
T PRK12331 219 IEAGADIIDTAISP 232 (448)
T ss_pred HHcCCCEEEeeccc
Confidence 665 65543 454
No 331
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=48.20 E-value=3.2e+02 Score=27.96 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 005248 122 EEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (706)
Q Consensus 122 ~Qi~~L~~aGceiVRvtv~~~~~-------A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~ 194 (706)
..+.++++.|.+-|-+....... .+.+.++++.+.+.|+ ++.+ |-. +- .|+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl--~ls~--h~p-------------~~---~nl~s 73 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNI--DVSV--HAP-------------YL---INLAS 73 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CEEE--ECC-------------ce---ecCCC
Confidence 56778888999999887655522 2345566666665554 5543 321 11 34444
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS 242 (706)
.+. + ..++-.+.++..++.|++.|.+ .|.+..|.
T Consensus 74 ~d~---------~----~r~~~~~~l~~~i~~A~~lGa~-~vv~h~g~ 107 (273)
T smart00518 74 PDK---------E----KVEKSIERLIDEIKRCEELGIK-ALVFHPGS 107 (273)
T ss_pred CCH---------H----HHHHHHHHHHHHHHHHHHcCCC-EEEEcccc
Confidence 221 2 2333345566799999999998 47777775
No 332
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=48.15 E-value=1.3e+02 Score=32.96 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=42.7
Q ss_pred CcCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 159 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+++|+.+|=+. ++.-+...++ +++-+.|.|.-+|.-. ....+...|+.+|+++=
T Consensus 236 ~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~----------------------~~~~i~~lA~~~gi~~~ 293 (368)
T TIGR02534 236 RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLL----------------------ESKKIAAIAEAAGIALY 293 (368)
T ss_pred hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HHHHHHHHHHHcCCcee
Confidence 478999999665 4444444443 4899999999998733 56789999999999975
Q ss_pred Ee
Q 005248 236 IG 237 (706)
Q Consensus 236 IG 237 (706)
+|
T Consensus 294 ~~ 295 (368)
T TIGR02534 294 GG 295 (368)
T ss_pred ee
Confidence 44
No 333
>PRK14016 cyanophycin synthetase; Provisional
Probab=47.93 E-value=1.4e+02 Score=36.07 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCeEEEecCCCCC---------------------------------chhHHHhhC-CChHHH-HHHHHHHH
Q 005248 222 PLVEKCKKYGRAVRIGTNHGSL---------------------------------SDRIMSYYG-DSPRGM-VESAFEFA 266 (706)
Q Consensus 222 ~vv~~ake~~~~IRIGvN~GSL---------------------------------~~~il~ryg-dt~eam-VeSAle~~ 266 (706)
.++++|+++|+|.+. ++.||| .+++|+++| ++|++. +.|.-+..
T Consensus 164 ~I~~~A~~~gi~~~~-l~~~~~v~lgyG~~~~~i~~~~~~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~ 242 (727)
T PRK14016 164 AIVDAAEARGIPYIR-LGDGSLVQLGYGKYQRRIQAAETDQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAEDAW 242 (727)
T ss_pred HHHHHHHHcCCCEEE-eCCCCeEecCCcHHHHHHHHhcCCCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHH
Confidence 589999999998744 454543 235677788 677654 55555666
Q ss_pred HHHHHCCCCcEE----------EEEecCChhHHHHHHHHHHH
Q 005248 267 RICRKLDFHNFL----------FSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 267 ~i~e~~~f~~iv----------iS~KaSnv~~~i~ayrlla~ 298 (706)
+.++++||-=|+ ++++..|...+.++|+.+.+
T Consensus 243 ~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~ 284 (727)
T PRK14016 243 EAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK 284 (727)
T ss_pred HHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH
Confidence 778888883221 33456677777777776543
No 334
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=47.68 E-value=43 Score=37.88 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCCeEEEe-cCCCCC-chhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 005248 218 EVFSPLVEKCKKYGRAVRIG-TNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIG-vN~GSL-~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~ 288 (706)
+.+.++++.||++|+++-|+ +|.--| +.+ .++-+.++|.+-+.+|+|+.|+..
T Consensus 89 ~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e------------------~~~~L~~~gld~v~iSvka~dpe~ 143 (404)
T TIGR03278 89 PELEELTKGLSDLGLPIHLGYTSGKGFDDPE------------------IAEFLIDNGVREVSFTVFATDPEL 143 (404)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCcccCCHH------------------HHHHHHHcCCCEEEEecccCCHHH
Confidence 46788999999999999998 654334 333 345567788899999999999763
No 335
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=47.51 E-value=2.7e+02 Score=28.46 Aligned_cols=139 Identities=13% Similarity=0.195 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCC--HHHHH----HHhhh-cCce
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA--PSVAL----RVAEC-FDKI 185 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al----~a~~~-~~ki 185 (706)
|..|.+.+.+=+.++.+. ..++-+-.+=..+ ...++.+.|++.+ .|+++|.-|. |+... .+.+. +|-+
T Consensus 6 D~~~~~~a~~i~~~~~~~-v~~iKvg~~l~~~--~g~~~i~~l~~~~--~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~ 80 (216)
T cd04725 6 DPPDEEFALALIDALGPY-VCAVKVGLELFEA--AGPEIVKELRELG--FLVFLDLKLGDIPNTVAAAAEALLGLGADAV 80 (216)
T ss_pred CCCCHHHHHHHHHhcCCc-ccEEEECHHHHHh--cCHHHHHHHHHCC--CcEEEEeecCchHHHHHHHHHHHHhcCCCEE
Confidence 455555555555544443 2355554443333 4455666677767 8999998765 44222 34443 8888
Q ss_pred eeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecC-CCCCchhHHHhhCCChHHHHHHHHH
Q 005248 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 186 RINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN-~GSL~~~il~rygdt~eamVeSAle 264 (706)
=++| ++.. +-++++++.+++++.-+ ++|- --|.+..-++. +.. ...-+-.++
T Consensus 81 Tvh~--~~G~----------------------~~l~~~~~~~~~~~~~~-~~v~~lss~~~~~~q~-~~~-~~~~~~~~~ 133 (216)
T cd04725 81 TVHP--YGGS----------------------DMLKAALEAAEEKGKGL-FAVTVLSSPGALDLQE-GIP-GSLEDLVER 133 (216)
T ss_pred EECC--cCCH----------------------HHHHHHHHHHhccCCeE-EEEEcCCCCCHHHHHh-hhc-CCHHHHHHH
Confidence 8987 4332 26778888888776433 2322 11344433333 211 123455667
Q ss_pred HHHHHHHCCCCcEEEEEec
Q 005248 265 FARICRKLDFHNFLFSMKA 283 (706)
Q Consensus 265 ~~~i~e~~~f~~iviS~Ka 283 (706)
.++++++.|.+-+|.|-.-
T Consensus 134 ~~~~a~~~g~~G~V~~~~~ 152 (216)
T cd04725 134 LAKLAREAGVDGVVCGATE 152 (216)
T ss_pred HHHHHHHHCCCEEEECCcc
Confidence 7888899998888887654
No 336
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=47.47 E-value=1.4e+02 Score=30.07 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEEEec------CCHHHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceeeCCCC
Q 005248 120 TVEEVMRIADQGADLVRITV------QGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGN 191 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv------~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRINPGN 191 (706)
.++-.+.+.+.|++.+=|.- ......+.+++|++. +++|+.++-..+ +.-|.++++. +++|=|+=..
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-----VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-----cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 34455556678998877761 223345567777774 679999876654 5666666665 8888655544
Q ss_pred CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCC---eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR---AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~---~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i 268 (706)
+.+++ .+. +++++.+. .+-|.+..|.+-. .|-. +..-.+..++++.
T Consensus 106 l~dp~----------------------~~~---~i~~~~g~~~i~~sid~~~~~~~~-----~~~~-~~~~~~~~~~~~~ 154 (234)
T cd04732 106 VKNPE----------------------LVK---ELLKEYGGERIVVGLDAKDGKVAT-----KGWL-ETSEVSLEELAKR 154 (234)
T ss_pred HhChH----------------------HHH---HHHHHcCCceEEEEEEeeCCEEEE-----CCCe-eecCCCHHHHHHH
Confidence 43321 222 33334432 3333333332211 1100 0112255678889
Q ss_pred HHHCCCCcEEEE-EecCC--hhHHHHHHHHHHHhhhcCCCCCcc
Q 005248 269 CRKLDFHNFLFS-MKASN--PVVMVQAYRLLVAEMYVHGWDYPL 309 (706)
Q Consensus 269 ~e~~~f~~iviS-~KaSn--v~~~i~ayrlla~~~~~eg~~YPL 309 (706)
+++.|++-|++. +-... ...-.+.++.+.+. .+.|+
T Consensus 155 ~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----~~ipv 193 (234)
T cd04732 155 FEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----TGIPV 193 (234)
T ss_pred HHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----cCCCE
Confidence 999999888775 31111 01114555556655 45664
No 337
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.42 E-value=88 Score=34.09 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=48.9
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLV 297 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~~iviS~----KaSnv~~~i~ayrlla 297 (706)
.++..|+.|+ -||-+.-=|+++++++..|- .. .+.+++.++.+.+.||.++.+.+ ---+...+.+..+.+.
T Consensus 102 ~l~~l~~~Gv-~risiGvqS~~~~~l~~lgR~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~ 177 (360)
T TIGR00539 102 WCKGLKGAGI-NRLSLGVQSFRDDKLLFLGRQHS---AKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAK 177 (360)
T ss_pred HHHHHHHcCC-CEEEEecccCChHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHH
Confidence 5677788885 48888888999999999973 22 55667778888899998665543 3444454544444444
No 338
>PRK01362 putative translaldolase; Provisional
Probab=47.38 E-value=1.9e+02 Score=30.13 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=58.5
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~ 181 (706)
.||.+|-. -.|.++.++|.++|.+.+-. +=|-+|--.+ .++.|++ |.+.|+++-+=+ =|+..-|+.|+++
T Consensus 52 g~vs~qv~----~~d~~~m~~~a~~l~~~~~~-i~iKIP~T~~--G~~a~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~a 121 (214)
T PRK01362 52 GPVSAEVI----ALDAEGMIKEGRELAKIAPN-VVVKIPMTPE--GLKAVKA-LSKEGIKTNVTL--IFSANQALLAAKA 121 (214)
T ss_pred CCEEEEEe----eCCHHHHHHHHHHHHHhCCC-EEEEeCCCHH--HHHHHHH-HHHCCCceEEee--ecCHHHHHHHHhc
Confidence 58999975 57899999999999999866 4466776553 3666654 666788776555 5888999999986
Q ss_pred -cCceeeCCCCC
Q 005248 182 -FDKIRVNPGNF 192 (706)
Q Consensus 182 -~~kiRINPGNi 192 (706)
++=|-+.=|=+
T Consensus 122 Ga~yispyvgRi 133 (214)
T PRK01362 122 GATYVSPFVGRL 133 (214)
T ss_pred CCcEEEeecchH
Confidence 65554443433
No 339
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=47.07 E-value=4.9e+02 Score=30.43 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~---A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGN 191 (706)
.+.+..+.|+.+....|||+|=+-+.-.++ .+.+.++.+. .++|++ |..|-..+. |+
T Consensus 32 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~-----~~~plI----~T~R~~~eG-----------G~ 91 (529)
T PLN02520 32 DSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQ-----SPLPTL----VTYRPKWEG-----------GQ 91 (529)
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhc-----CCCcEE----EEeccHHHC-----------CC
Q ss_pred CCcchhhccccccchHHHHHHHhhH--------------HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHI--------------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I--------------~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
+-. ++++|.+=++.. .+++.++++.++..++.+ |.-+| .|..||.
T Consensus 92 ~~~----------~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~v-I~S~H---------~f~~tP~- 150 (529)
T PLN02520 92 YEG----------DENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKV-IVSSH---------NYENTPS- 150 (529)
T ss_pred CCC----------CHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEE-EEEec---------CCCCCCC-
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcc
Q 005248 258 MVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPL 309 (706)
.+.-.+.++-+++.|.+=++|-..+.+..+..+.+++..+. +.|+
T Consensus 151 -~~el~~~~~~~~~~gaDi~Kia~~~~~~~D~~~ll~~~~~~------~~p~ 195 (529)
T PLN02520 151 -VEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHS------QVPT 195 (529)
T ss_pred -HHHHHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhhc------CCCE
No 340
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=47.06 E-value=1e+02 Score=34.42 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=48.8
Q ss_pred HHHHHHHHhhccCCcCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 146 DACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 146 ~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
+.+.++++ .+++||.+|=+ |+++-+...++ +++-|++-|+..|.-. ...+
T Consensus 247 ~~~~~L~~-----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit----------------------~~~k 299 (404)
T PRK15072 247 EAFRLIRQ-----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT----------------------HLRR 299 (404)
T ss_pred HHHHHHHh-----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH----------------------HHHH
Confidence 44445555 47899999976 45666666655 4999999999998733 5678
Q ss_pred HHHHHHHcCCeEEEe
Q 005248 223 LVEKCKKYGRAVRIG 237 (706)
Q Consensus 223 vv~~ake~~~~IRIG 237 (706)
+.+.|.++|+++=++
T Consensus 300 ia~lA~~~gi~~~~h 314 (404)
T PRK15072 300 IADFAALYQVRTGSH 314 (404)
T ss_pred HHHHHHHcCCceeec
Confidence 999999999998654
No 341
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=46.81 E-value=2.1e+02 Score=35.33 Aligned_cols=155 Identities=18% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHhhccCCcC-----cceeeccCCCHHHHHHHhh---hcCceeeCC
Q 005248 119 GTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAE---CFDKIRVNP 189 (706)
Q Consensus 119 atv~Qi~~L~~-aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~-----iPLVADIHF~~~~Al~a~~---~~~kiRINP 189 (706)
.-++-|.+..+ +|+.=|||-+|-...++-+.++++.++..|+. +|+++=|= .|..++.+=+ .+|-+=|.|
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIE-tp~av~~~deIa~~vDfi~IGt 699 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCE-IPSNALLAEEFLEYFDGFSIGS 699 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEc-CHHHHHHHHHHHHhCCEEEECc
Confidence 44556666666 68888999999988888888888887766653 33333222 2455442222 388899999
Q ss_pred CCCCc------chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHH
Q 005248 190 GNFAD------RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 190 GNig~------~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAl 263 (706)
..+.- +...+-. .-|+.....+.+.++.+++.|+++|+|+ |+ .|-.- ++.|
T Consensus 700 nDLtq~~lg~dR~n~~v~-----~~~~~~hPav~~ai~~vi~aa~~~g~~v--gi-cge~a-------~~~p-------- 756 (795)
T PRK06464 700 NDLTQLTLGLDRDSGLVA-----HLFDERNPAVKKLISMAIKAAKKAGKYV--GI-CGQAP-------SDHP-------- 756 (795)
T ss_pred hHHHHHHhCcCCCchhhh-----hccCCCCHHHHHHHHHHHHHHHHcCCEE--EE-cCCCC-------CCcH--------
Confidence 87642 0000000 0122223455667788999999999997 65 44220 0113
Q ss_pred HHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 264 EFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 264 e~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
+.++.+-++||+.+ ||-+..+..+-.+-+.+-++
T Consensus 757 ~~~~~l~~~G~~~l--s~~~d~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 757 DFAEWLVEEGIDSI--SLNPDAVVDTWLAVAEVEKK 790 (795)
T ss_pred HHHHHHHHCCCCEE--EEcchhHHHHHHHHHHhHHH
Confidence 35667778999865 45455555555555554444
No 342
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=46.62 E-value=24 Score=36.07 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHh
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~-A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~ 179 (706)
+-|+-|.=|...+ ...+..+.++|+++|=+-+-+.+. .+.+..||+ .|+..=|. +||.-.++.+
T Consensus 57 ~~~~DvHLMv~~P-------~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~----~g~k~Gia----lnP~T~~~~~ 121 (201)
T PF00834_consen 57 DLPLDVHLMVENP-------ERYIEEFAEAGADYITFHAEATEDPKETIKYIKE----AGIKAGIA----LNPETPVEEL 121 (201)
T ss_dssp SSEEEEEEESSSG-------GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHH----TTSEEEEE----E-TTS-GGGG
T ss_pred CCcEEEEeeeccH-------HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHH----hCCCEEEE----EECCCCchHH
Confidence 4577777787643 256778899999977665543332 345555655 47765544 4555555555
Q ss_pred h----hcCcee---eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCC
Q 005248 180 E----CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (706)
Q Consensus 180 ~----~~~kiR---INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~G 241 (706)
+ .+|.|= +|||.-|- .|.... -+|++++-+..+++|..+.|.|..|
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq---~f~~~~-------------~~KI~~l~~~~~~~~~~~~I~vDGG 174 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQ---KFIPEV-------------LEKIRELRKLIPENGLDFEIEVDGG 174 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB-----HGGH-------------HHHHHHHHHHHHHHTCGSEEEEESS
T ss_pred HHHhhhcCEEEEEEecCCCCcc---cccHHH-------------HHHHHHHHHHHHhcCCceEEEEECC
Confidence 4 244443 69996553 255333 4566778899999999999999655
No 343
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=46.45 E-value=7.1 Score=30.01 Aligned_cols=16 Identities=31% Similarity=0.897 Sum_probs=10.5
Q ss_pred ccCCceEeccCCCCcc
Q 005248 636 RNTKTEYVSCPSCGRT 651 (706)
Q Consensus 636 R~~kte~ISCPsCGRT 651 (706)
|....++|||+.||=.
T Consensus 15 RR~~~~~isC~~CGPr 30 (35)
T PF07503_consen 15 RRFHYQFISCTNCGPR 30 (35)
T ss_dssp TTTT-TT--BTTCC-S
T ss_pred CcccCcCccCCCCCCC
Confidence 7788999999999953
No 344
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=46.25 E-value=4e+02 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh
Q 005248 122 EEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (706)
Q Consensus 122 ~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~ 154 (706)
+++..+.+.| ++.+++.+.++++.+.++.++
T Consensus 85 ~~l~~a~~~g--~~~~~ids~~el~~l~~~a~~ 115 (373)
T cd06828 85 EELELALELG--ILRINVDSLSELERLGEIAPE 115 (373)
T ss_pred HHHHHHHHcC--CeEEEECCHHHHHHHHHHHHh
Confidence 5677777777 478888888888888877764
No 345
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=45.94 E-value=2.2e+02 Score=30.71 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHH--------------HH----------------------HHHHHhhccCCcCcc
Q 005248 120 TVEEVMRIADQGADLVRITVQGKREAD--------------AC----------------------FEIKNSLVQKNYNIP 163 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~~A~--------------al----------------------~~I~~~L~~~g~~iP 163 (706)
|+.+++++.+.|--|+=+++-|.-.|+ .+ +.|++ +.+.|
T Consensus 3 t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r-----~~~~p 77 (264)
T PRK00311 3 TISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR-----GAPRA 77 (264)
T ss_pred CHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-----cCCCC
Q ss_pred -eeeccCCC------HHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE--
Q 005248 164 -LVADIHFA------PSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV-- 234 (706)
Q Consensus 164 -LVADIHF~------~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I-- 234 (706)
+|||+-|. .+.+..+.+.++..-..==||=|+. ...+.|+++.+.|+|+
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~----------------------~~~~~I~al~~agIpV~g 135 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGE----------------------EVAETIKRLVERGIPVMG 135 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcH----------------------HHHHHHHHHHHCCCCEee
Q ss_pred EEecCCCCC-chhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 235 RIGTNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 235 RIGvN~GSL-~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
=||.|-=|- ...=...-|.|.+. .+.+++-++.+++-|-+=|++
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~-a~~~i~ra~a~~eAGA~~i~l 180 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEA-AEKLLEDAKALEEAGAFALVL 180 (264)
T ss_pred eecccceeecccCCeeeecCCHHH-HHHHHHHHHHHHHCCCCEEEE
No 346
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=45.79 E-value=3.4e+02 Score=27.51 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH------HHHHHHHHHHhhccCCcCcceeeccC---------CCHHHHHHHh
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGKR------EADACFEIKNSLVQKNYNIPLVADIH---------FAPSVALRVA 179 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~~------~A~al~~I~~~L~~~g~~iPLVADIH---------F~~~~Al~a~ 179 (706)
.|.+...+|+.++...|||+|=+-+.-.. ..+.+..|++. +++|+|.-+= ++...-++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~-----~~~piI~T~R~~~eGG~~~~~~~~~~~ll 81 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRS-----LDLPIIFTVRTKEEGGRFQGSEEEYLELL 81 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHH-----CTSEEEEE--BGGGTSSBSS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHh-----CCCCEEEEecccccCCCCcCCHHHHHHHH
Confidence 47788899999999999999977765444 66777777775 5899997643 2222222222
Q ss_pred hhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 180 ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 180 ~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
+.+ +|.+ -.|-| .++. ..++ +......++..++.| |+--| .. ..||..
T Consensus 82 ~~~--~~~~-~d~iD-------iE~~---------~~~~-~~~~~~~~~~~~~~i-I~S~H-~f--------~~tp~~-- 129 (224)
T PF01487_consen 82 ERA--IRLG-PDYID-------IELD---------LFPD-DLKSRLAARKGGTKI-ILSYH-DF--------EKTPSW-- 129 (224)
T ss_dssp HHH--HHHT-SSEEE-------EEGG---------CCHH-HHHHHHHHHHTTSEE-EEEEE-ES--------S---TH--
T ss_pred HHH--HHcC-CCEEE-------EEcc---------cchh-HHHHHHHHhhCCCeE-EEEec-cC--------CCCCCH--
Confidence 211 1222 12222 1111 0111 111145555666655 44444 22 224422
Q ss_pred HHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCch
Q 005248 260 ESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRM 324 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~I 324 (706)
+...+.++.+.+.|.+=++|-+.+.+..+..+..+.+.+.... .+.|+ .==+||+.|++
T Consensus 130 ~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~--~~~p~----i~~~MG~~G~~ 188 (224)
T PF01487_consen 130 EELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREE--PDIPV----IAISMGELGRI 188 (224)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHH--TSSEE----EEEEETGGGHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhc--cCCcE----EEEEcCCCchh
Confidence 1156688888899999999999999888887766666655222 34554 22245666654
No 347
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=45.68 E-value=63 Score=37.68 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCc--CcceeeccCCCHHHHH----HHhh
Q 005248 112 NDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNY--NIPLVADIHFAPSVAL----RVAE 180 (706)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~--~iPLVADIHF~~~~Al----~a~~ 180 (706)
.+-.|.+.-++.++++.++||+.++|. .-++ +..+-++.||+. + ++||-.-.|-+.-+|+ +|++
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-----~~~~ipI~~H~Hnt~GlA~An~laAie 223 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-----CGEDTRINLHCHSTTGVTLVSLMKAIE 223 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-----CCCCCeEEEEeCCCCCcHHHHHHHHHH
Confidence 345689999999999999999988876 2222 444556666664 5 6899877787777776 5666
Q ss_pred h-cCcee
Q 005248 181 C-FDKIR 186 (706)
Q Consensus 181 ~-~~kiR 186 (706)
+ ++-|=
T Consensus 224 AGad~vD 230 (499)
T PRK12330 224 AGVDVVD 230 (499)
T ss_pred cCCCEEE
Confidence 5 66544
No 348
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=45.65 E-value=79 Score=34.07 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHcCC--eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 005248 218 EVFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (706)
Q Consensus 218 ~~f~~vv~~ake~~~--~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv 286 (706)
..+.++++.+++++. .+.|-+| |+|-. +.++.+.+.|++.|-||+.+.+.
T Consensus 76 ~dl~~li~~i~~~~~l~~i~itTN-G~ll~------------------~~~~~L~~aGl~~v~ISlDs~~~ 127 (329)
T PRK13361 76 RGCDQLVARLGKLPGLEELSLTTN-GSRLA------------------RFAAELADAGLKRLNISLDTLRP 127 (329)
T ss_pred ccHHHHHHHHHhCCCCceEEEEeC-hhHHH------------------HHHHHHHHcCCCeEEEEeccCCH
Confidence 356678888888764 6788887 54421 23444555666666677766654
No 349
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.61 E-value=2.3e+02 Score=27.96 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=77.3
Q ss_pred HHHHHHhhccCCcCcceeeccCCCHHHHHHHhh-----hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHH
Q 005248 148 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE-----CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (706)
Q Consensus 148 l~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~-----~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~ 222 (706)
..-+++.+++.|+.+=++.|-.+++..-..+++ .+|.|=++|-+-. ...+
T Consensus 17 ~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-------------------------~~~~ 71 (257)
T PF13407_consen 17 IKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD-------------------------SLAP 71 (257)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT-------------------------TTHH
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH-------------------------HHHH
Confidence 445556666667777666788888766665544 2777888887663 2357
Q ss_pred HHHHHHHcCCeEEEecCCC-CCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhh
Q 005248 223 LVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~G-SL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~ 300 (706)
+++.|++.|+|+ |-+|.+ ..+.......|..+..+-..+.+++.-.-..+ .+|++-.=.-+...+.+-++-+-+.|
T Consensus 72 ~l~~~~~~gIpv-v~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l 148 (257)
T PF13407_consen 72 FLEKAKAAGIPV-VTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDAL 148 (257)
T ss_dssp HHHHHHHTTSEE-EEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceE-EEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHH
Confidence 899999999999 667777 44444445556556666666555554333333 56665533333344444455555554
No 350
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=45.58 E-value=5.2e+02 Score=29.72 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCC---cEEEEEecCChhHHHHHHHHHHH
Q 005248 222 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 222 ~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~---~iviS~KaSnv~~~i~ayrlla~ 298 (706)
++++..++.|+ .||-+--=|.++++++.++... -++...+.++.|++.|+. ++++-+=--+..++.+.++.+.+
T Consensus 288 ell~~l~~aG~-~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~ 364 (497)
T TIGR02026 288 DILHLYRRAGL-VHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLD 364 (497)
T ss_pred HHHHHHHHhCC-cEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 46677777886 3544444566788999887321 145567788999999983 45555555555666666665544
No 351
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=45.53 E-value=1.3e+02 Score=32.41 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcCcceeeccCCC
Q 005248 121 VEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHFA 171 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 171 (706)
-+|+..|.++|+|++=+ |+|+.++++++-..-++. ...+|++.=+-|+
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~---~~~~pv~is~~~~ 191 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEE---FPGVPAWLSFTLR 191 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHh---cCCCcEEEEEEeC
Confidence 57899999999999999 799999998665554421 1268988766553
No 352
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=45.51 E-value=26 Score=38.66 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=36.5
Q ss_pred CCCHHHHH----HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcC-cceee
Q 005248 114 TKDVAGTV----EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVA 166 (706)
Q Consensus 114 T~Dv~atv----~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~-iPLVA 166 (706)
.-|-++|+ +|....++||||+| .|+.===-.+..||+.|++.|+. +|+++
T Consensus 129 ~idND~Tl~~L~k~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~Ims 183 (314)
T cd00384 129 YVDNDATLELLAKIAVSHAEAGADIV---APSDMMDGRVAAIREALDEAGFSDVPIMS 183 (314)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCee---ecccccccHHHHHHHHHHHCCCCCCceee
Confidence 34556665 45566799999998 44433334578999999999994 99986
No 353
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=45.43 E-value=15 Score=38.07 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=13.8
Q ss_pred CCceEeccCCCCcccccHHHHHH
Q 005248 638 TKTEYVSCPSCGRTLFDLQEISA 660 (706)
Q Consensus 638 ~kte~ISCPsCGRTlfDLq~~~a 660 (706)
..-+|+.||+|| -+==+++++.
T Consensus 2 ~~~iy~~Cp~Cg-~eev~hEVik 23 (201)
T COG1326 2 TEEIYIECPSCG-SEEVSHEVIK 23 (201)
T ss_pred cceEEEECCCCC-cchhhHHHHH
Confidence 345799999999 3222345544
No 354
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=45.39 E-value=86 Score=32.94 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCC-eEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 005248 219 VFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (706)
Q Consensus 219 ~f~~vv~~ake~~~-~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv 286 (706)
.|.++++.++++|+ .+.|=+| |+|-+ +.++.+.+.|++.|.||+.+.+.
T Consensus 72 ~l~~iv~~l~~~g~~~v~i~TN-G~ll~------------------~~~~~l~~~g~~~v~iSld~~~~ 121 (302)
T TIGR02668 72 DLIEIIRRIKDYGIKDVSMTTN-GILLE------------------KLAKKLKEAGLDRVNVSLDTLDP 121 (302)
T ss_pred CHHHHHHHHHhCCCceEEEEcC-chHHH------------------HHHHHHHHCCCCEEEEEecCCCH
Confidence 46778888888887 7777776 55522 23344556677778888877654
No 355
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.27 E-value=1.2e+02 Score=32.05 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=98.0
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhcc--------CCcC-cceee
Q 005248 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ--------KNYN-IPLVA 166 (706)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~--------~g~~-iPLVA 166 (706)
|||+ -+.|+|+. +.|..+.+-+..|+++|.+| +++=..=.+.+ .-+..+.+.+.. .++. .+.+.
T Consensus 18 I~gd-~v~V~~li~~g~dpH~yep~p~d~~~l~~A--dliv~~G~~~E--~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (276)
T cd01016 18 IGGD-HVEVTGLMGPGVDPHLYKATAGDVEKLQNA--DVVFYNGLHLE--GKMSDVLSKLGSSKSVIALEDTLDRSQLIL 92 (276)
T ss_pred HcCC-eEEEEEeeCCCCCcccCCCCHHHHHHHHhC--CEEEEcCcChH--HHHHHHHHHhccCCceEEeccCcCcccccc
Confidence 5665 58899985 47789999999999999987 55544334444 355555554421 1111 11111
Q ss_pred c---cCCCH------HHHHHHhhh-cCc-eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 167 D---IHFAP------SVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 167 D---IHF~~------~~Al~a~~~-~~k-iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
| .|+|| ..|...++. .++ .++.|-|=.. |+. .-+.|.++|+.++++++..+...++.++.
T Consensus 93 ~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~l~~~~~~~~~-- 163 (276)
T cd01016 93 DEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDE----FQA---NSEAYVEELDSLDAYAKKKIAEIPEQQRV-- 163 (276)
T ss_pred cccCCCCCCCcccCHHHHHHHHHHHHHHHHHHCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhhCchhcCe--
Confidence 1 12344 466665554 222 2468887211 111 13569999999999888877764443333
Q ss_pred EecCCCCCchhHHHhhCCCh---HHH-------HHHHHHHHHHHHHCCCCcEEEE
Q 005248 236 IGTNHGSLSDRIMSYYGDSP---RGM-------VESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~---eam-------VeSAle~~~i~e~~~f~~iviS 280 (706)
+=+.|.++ ..+.++||=+. .++ ...-.+.++.+++.+..-|...
T Consensus 164 ~~t~H~af-~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 217 (276)
T cd01016 164 LVTAHDAF-GYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVE 217 (276)
T ss_pred EEEecCcH-HHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 35778766 56788888321 111 2233456667777877655543
No 356
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=45.20 E-value=75 Score=35.67 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCEEEEec--------CCHHHHHHHHHHHHhhccCCcCcceee-ccCCCHHHHHHHhhh-cCceeeC
Q 005248 119 GTVEEVMRIADQGADLVRITV--------QGKREADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRVN 188 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv--------~~~~~A~al~~I~~~L~~~g~~iPLVA-DIHF~~~~Al~a~~~-~~kiRIN 188 (706)
.+.+.+..++++|+++|=+-- -+..+-..+.++++. .++|+|+ | .+++..|+.+++. +|-|-+-
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-----~~IPVI~G~-V~t~e~A~~~~~aGaDgV~~G 216 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-----LDVPVIAGG-VNDYTTALHLMRTGAAGVIVG 216 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEEC
Confidence 566777888999999987641 111234556666664 5799998 7 6899999999996 9988754
Q ss_pred CCC
Q 005248 189 PGN 191 (706)
Q Consensus 189 PGN 191 (706)
+|-
T Consensus 217 ~gg 219 (369)
T TIGR01304 217 PGG 219 (369)
T ss_pred CCC
Confidence 443
No 357
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=45.13 E-value=1.1e+02 Score=32.43 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=45.9
Q ss_pred CceEEEeccCCC--CCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcC-cceeeccCCCHH
Q 005248 102 HPIRVQTMTTND--TKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYN-IPLVADIHFAPS 173 (706)
Q Consensus 102 ~PI~VQSMt~t~--T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~ 173 (706)
..|.+++|.-.| ..|.+..++.++++.++|++.|++. +-++ +-++-++.+++. ++ +||=.=.|=|..
T Consensus 133 ~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~~l~~H~Hnd~G 207 (273)
T cd07941 133 REVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER-----LPGVPLGIHAHNDSG 207 (273)
T ss_pred CeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-----CCCCeeEEEecCCCC
Confidence 356777774432 3578888999999999999988877 2222 333444555553 44 788665665666
Q ss_pred HHH
Q 005248 174 VAL 176 (706)
Q Consensus 174 ~Al 176 (706)
+|+
T Consensus 208 la~ 210 (273)
T cd07941 208 LAV 210 (273)
T ss_pred cHH
Confidence 665
No 358
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=45.11 E-value=76 Score=35.37 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCc
Q 005248 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (706)
Q Consensus 84 ~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L-~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~i 162 (706)
.|-..+.+.|+++++|+. ..+.+..++-+.+| .++||+-|.|-=-..+-++.++.+.+ ..|
T Consensus 91 ~Rga~~a~vVaDmPfgSY------------~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~------~GI 152 (332)
T PLN02424 91 ARGANRPLLVGDLPFGSY------------ESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVE------AGI 152 (332)
T ss_pred hccCCCCEEEeCCCCCCC------------CCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHH------cCC
Confidence 455567788888888743 24678899999999 56999999998543445566666664 568
Q ss_pred ceeeccCCCHHH
Q 005248 163 PLVADIHFAPSV 174 (706)
Q Consensus 163 PLVADIHF~~~~ 174 (706)
|+++-|=++|+-
T Consensus 153 PV~gHiGLtPQs 164 (332)
T PLN02424 153 AVMGHVGLTPQA 164 (332)
T ss_pred CEEEeeccccee
Confidence 999988877764
No 359
>PLN02540 methylenetetrahydrofolate reductase
Probab=45.10 E-value=6.1e+02 Score=30.43 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHc-CCC-EEEEecCCHHHHHHHHHHHHhhccCCcC--------cceeec------cCCCHHHHHHH
Q 005248 115 KDVAGTVEEVMRIADQ-GAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVAD------IHFAPSVALRV 178 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~a-Gce-iVRvtv~~~~~A~al~~I~~~L~~~g~~--------iPLVAD------IHF~~~~Al~a 178 (706)
...+.|++=+..|.+. |-+ +.=+|+-++... .|...-.++.+.|+. -|--+| --|++ |..-
T Consensus 41 st~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~-~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~--A~dL 117 (565)
T PLN02540 41 STADLTLDIANRMQNMICVETMMHLTCTNMPVE-KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFAC--ALDL 117 (565)
T ss_pred CcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCccc--HHHH
Q ss_pred hhhcCc-----eeeCCCCC--CcchhhccccccchHHHHHHHhhHHhhH------------------HHHHHHHHHcC--
Q 005248 179 AECFDK-----IRVNPGNF--ADRRAQFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG-- 231 (706)
Q Consensus 179 ~~~~~k-----iRINPGNi--g~~~k~F~~~~YtdeeY~~El~~I~~~f------------------~~vv~~ake~~-- 231 (706)
++.+.+ ..|--.-| |..+..+..-.....+++.+++++++|+ ..+++.|++.|
T Consensus 118 V~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 118 VKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCCC
Q ss_pred CeEEEe---------------cCCCCCchhHHHhh---CCChHH----HHHHHHHHHHHHHHCCCCcEEE
Q 005248 232 RAVRIG---------------TNHGSLSDRIMSYY---GDSPRG----MVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 232 ~~IRIG---------------vN~GSL~~~il~ry---gdt~ea----mVeSAle~~~i~e~~~f~~ivi 279 (706)
+||-.| +-+-++++.+++++ .+.+++ =|+=|.|.++-+.+.|.+-|-|
T Consensus 198 vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHf 267 (565)
T PLN02540 198 CPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHL 267 (565)
T ss_pred CCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
No 360
>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]
Probab=44.99 E-value=4.3e+02 Score=28.48 Aligned_cols=204 Identities=13% Similarity=0.142 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh---
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--- 181 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~----------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~--- 181 (706)
.++++.+.+..++...|+++|-+-..+ .+|..-+.-|-+.+++..+.+|+--|- +-+..|..|+++
T Consensus 28 ~~~~~a~~~a~~~~~~Ga~iIdiGgeStrpg~~~vs~~~E~~Rv~Pvl~~i~~~~~~v~isvdt-~r~~va~~a~~aG~~ 106 (274)
T COG0294 28 LSLDDALKHADKMIAEGADIIDIGGESTRPGAEFVSVEEELERVDPVLEAVRSPESDVAISVDT-SRAEVAPLALGAGAD 106 (274)
T ss_pred ccHHHHHHHHHHHHhCCCcEEEeCCccCCCCCCccChHHHHHHHHHHHHHhhccCCceeEeccc-cchHHHHHHHHcccc
Confidence 346899999999999999999986433 234344444444566554556666554 445555555553
Q ss_pred ----cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHH
Q 005248 182 ----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (706)
Q Consensus 182 ----~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~ea 257 (706)
++..++||+. +-..|.|+|.+|=+=.|.|--.. ++.+ |--++
T Consensus 107 ~inDv~g~~~~p~~-------------------------------la~va~e~~~~i~lmh~~~~~~~--~~~~-d~~~~ 152 (274)
T COG0294 107 EINDVDGGGIDPAL-------------------------------LAAVAAELGAPILLMHEQGVPET--MSIN-DLVAA 152 (274)
T ss_pred eeeecccCCCCHHH-------------------------------HHHHHHHcCCCEEEEcCCCCCCC--CCcc-hHHHH
Confidence 2223333322 44567799999977666654422 1100 11233
Q ss_pred HHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCccccc---------ccccCCCCCCchhh
Q 005248 258 MVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLG---------VTEAGEGEDGRMKS 326 (706)
Q Consensus 258 mVeSAle~~~i~e~~~f--~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLG---------VTEAG~g~~G~IKS 326 (706)
+-..-.+.++.|...|. ++|++--.---.....+.+.+|..-.+.....||+=+| ++. ...+.|+..
T Consensus 153 ~~~~l~~~~~~~~~~gv~~~~iilDpg~gf~k~~~~n~~ll~~~~~~~~~g~piLvg~srK~~ig~~~~--~~~~~r~~g 230 (274)
T COG0294 153 VDMFLLARIEEALAAGVGRELIILDPGFGFGKTPEHNLELLARLSEFLELGFPILVGHSRKSFIGAILG--RDPAERLEG 230 (274)
T ss_pred HHHHHHHHHHHHhhcCCChhhEEecCCcCCCcccchhHHHHHhHHHhhcCCCcEEEecCCceehhhhcC--CChhhhhhh
Confidence 33334445556777666 45555443222222233444444432222467999988 333 568899999
Q ss_pred HHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHH
Q 005248 327 AIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 362 (706)
Q Consensus 327 avGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~l~~ 362 (706)
+.+...+...-=-+-+| ++.|...+++++
T Consensus 231 t~a~~~~~~~~g~~ivr-------vHdv~~~~e~~k 259 (274)
T COG0294 231 TLATELLAAALGADIVR-------VHDVYEGRELLK 259 (274)
T ss_pred hHHHHHHHHHcCCCEEE-------EcchHhhHHHHH
Confidence 99998877665444555 788999999988
No 361
>PRK15000 peroxidase; Provisional
Probab=44.99 E-value=50 Score=33.34 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCceEEEeccC--CC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH-HHHhhccCCcCcceeeccC
Q 005248 101 EHPIRVQTMTT--ND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFE-IKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 101 ~~PI~VQSMt~--t~--T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~-I~~~L~~~g~~iPLVADIH 169 (706)
+.++.+=+-.. |. +..+.+-.+-..++.+.||+++-|++.+....++..+ +++..--.+++.|+++|-.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 35666665543 22 3344455555667788899999999999877666543 4553221246899999965
No 362
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.97 E-value=91 Score=34.11 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCE-EEEecCCHHHH--H---------HHHHHHHhhc----cCC----cCcceeeccCCCHHHHHH
Q 005248 118 AGTVEEVMRIADQGADL-VRITVQGKREA--D---------ACFEIKNSLV----QKN----YNIPLVADIHFAPSVALR 177 (706)
Q Consensus 118 ~atv~Qi~~L~~aGcei-VRvtv~~~~~A--~---------al~~I~~~L~----~~g----~~iPLVADIHF~~~~Al~ 177 (706)
.+.+..+.+|.++|-++ +-|+..+..+. + .+.+|.+.++ +.+ +..|+|.+++-+..-+.+
T Consensus 192 nG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~ 271 (343)
T PRK14469 192 VGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKK 271 (343)
T ss_pred CCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHH
Confidence 33468899999999885 66664444332 1 2333333322 223 346899998887544443
Q ss_pred Hhhh-------cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEe
Q 005248 178 VAEC-------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (706)
Q Consensus 178 a~~~-------~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIG 237 (706)
-++. +.=+..||- .+ .|..-. ++.+.++.+..+++|+.+.|-
T Consensus 272 La~llk~~~~~VnLIpynp~-~~----~~~~ps-------------~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 272 LAELLKGLKVFVNLIPVNPT-VP----GLEKPS-------------RERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred HHHHHhccCcEEEEEecCCC-Cc----cCCCCC-------------HHHHHHHHHHHHHCCCeEEEe
Confidence 3332 222344551 11 122111 344555667778888888774
No 363
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.67 E-value=4.4e+02 Score=30.07 Aligned_cols=134 Identities=18% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCce
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~-------A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ki 185 (706)
..++++.-+++++.|.+.|..-|.++-++... -..+.++-+.|.+. ..+.++
T Consensus 182 rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~---------------------~gi~~i 240 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI---------------------PGLERL 240 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc---------------------CCcceE
Confidence 35689999999999999999888888654211 01122222221110 012345
Q ss_pred ee---CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 186 RI---NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
|+ ||..+-+ ++++..++.+ .-+-||+-+| |+++|++++-.- =+
T Consensus 241 r~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~v~lglQSg--sd~vLk~m~R~~--t~ 289 (459)
T PRK14338 241 RFLTSHPAWMTD---------------------------RLIHAVARLPKCCPHINLPVQAG--DDEVLKRMRRGY--TV 289 (459)
T ss_pred EEEecChhhcCH---------------------------HHHHHHhcccccccceecCcccC--CHHHHHhccCCC--CH
Confidence 53 5655521 2444445543 2355566555 788898886211 13
Q ss_pred HHHHHHHHHHHHC--CC---CcEEEEEecCChhHHHHHHHHHHH
Q 005248 260 ESAFEFARICRKL--DF---HNFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 260 eSAle~~~i~e~~--~f---~~iviS~KaSnv~~~i~ayrlla~ 298 (706)
+..++.++.+.+. |+ .++++-.--=+..++.+.++++.+
T Consensus 290 e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~ 333 (459)
T PRK14338 290 ARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEE 333 (459)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4455566666665 44 356666766666666666666654
No 364
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.65 E-value=6.7 Score=31.84 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=14.2
Q ss_pred ccCCCCccccc--HHHHHHHHHHHhCC
Q 005248 644 SCPSCGRTLFD--LQEISAEIREKTSH 668 (706)
Q Consensus 644 SCPsCGRTlfD--Lq~~~a~Ik~~t~h 668 (706)
.||-|||.+=+ -++++.+.+..+..
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i~~ 48 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEIEE 48 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999998755 36666666655543
No 365
>PHA00616 hypothetical protein
Probab=44.60 E-value=14 Score=29.94 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=23.4
Q ss_pred ccCCCCcccccHHHHHHHHHHHhCC
Q 005248 644 SCPSCGRTLFDLQEISAEIREKTSH 668 (706)
Q Consensus 644 SCPsCGRTlfDLq~~~a~Ik~~t~h 668 (706)
.||.||.+-.+.++++.-++..+++
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 5999999999999999999998887
No 366
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=44.38 E-value=74 Score=33.93 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-CH-----HHHHHHHHHHHhhccCCcCccee----eccCCCHHHHHHHhhh--cC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQ-GK-----READACFEIKNSLVQKNYNIPLV----ADIHFAPSVALRVAEC--FD 183 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~-~~-----~~A~al~~I~~~L~~~g~~iPLV----ADIHF~~~~Al~a~~~--~~ 183 (706)
-.+..+++..++.+||+-+|-+-+- +. -+++...++.+.+|+...++++= +-..+++.-=+++++. -|
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~pd 103 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWKPD 103 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--S
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 3688999999999999999999988 42 34566666666666666666654 3356665433344433 55
Q ss_pred ceeeCCCCCCcc--hhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHH
Q 005248 184 KIRVNPGNFADR--RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 184 kiRINPGNig~~--~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeS 261 (706)
-.=+|+|-+... +..|.+. .+...++++.++|+|+..=|++ .+. ++++.
T Consensus 104 ~asl~~gs~n~~~~~~~~~n~--------------~~~~~~~~~~~~e~Gi~pe~ev----~d~-----------~~l~~ 154 (272)
T PF05853_consen 104 MASLNPGSMNFGTRDRVYINT--------------PADARELARRMRERGIKPEIEV----FDP-----------GHLRN 154 (272)
T ss_dssp EEEEE-S-EEESGGCSEE-----------------HHHHHHHHHHHHHTT-EEEEEE----SSH-----------HHHHH
T ss_pred eEEecccccccccCCceecCC--------------HHHHHHHHHHHHHcCCeEEEEE----EcH-----------HHHHH
Confidence 577899944322 1112211 2345669999999999999998 322 44444
Q ss_pred HHHHHHHHHHCCC------CcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhHHHHHHHhh
Q 005248 262 AFEFARICRKLDF------HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQ 335 (706)
Q Consensus 262 Ale~~~i~e~~~f------~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~ 335 (706)
+.. +.+.|. -++++.... ..+-..+.+..+.+.+.. ..++.|+=.|...--....|+..|.=..
T Consensus 155 ~~~----l~~~G~l~~p~~~~~vlG~~~-g~~~~~~~l~~~l~~l~~-----~~~w~v~~~g~~~~~~~~~Ai~~GghvR 224 (272)
T PF05853_consen 155 ARR----LIEKGLLPGPLLVNFVLGVPG-GMPATPENLLAMLDMLPE-----GAPWSVCGIGRNQWPLLAAAIAMGGHVR 224 (272)
T ss_dssp HHH----HHHTTSS-SSEEEEEEES-TT-S--S-HHHHHHHHHHHHH-----TEEEEEEE-GGGHHHHHHHHHHTT-EEE
T ss_pred HHH----HHHCCCCCCCeEEEEcccCCC-CCCCCHHHHHHHHHhcCC-----CCcEEEEccchhhHHHHHHHHHcCCceE
Confidence 433 334455 445554443 122233333344444332 3344554444333344555555555555
Q ss_pred cCCCceeEEe
Q 005248 336 DGLGDTIRVS 345 (706)
Q Consensus 336 dGIGDTIRVS 345 (706)
=|+.|++...
T Consensus 225 VGlED~~~~~ 234 (272)
T PF05853_consen 225 VGLEDNLYLP 234 (272)
T ss_dssp ESTTT-SEEE
T ss_pred EecCccccCC
Confidence 6677776663
No 367
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=44.37 E-value=1.9e+02 Score=25.84 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=48.3
Q ss_pred HHHHHHHHcC-CeEEEecCCCCCchh-HHHhhCCChHHHHHHHHHHHHHHHHCCCC---cEEEEEecCChhHHHHHHHHH
Q 005248 222 PLVEKCKKYG-RAVRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRLL 296 (706)
Q Consensus 222 ~vv~~ake~~-~~IRIGvN~GSL~~~-il~rygdt~eamVeSAle~~~i~e~~~f~---~iviS~KaSnv~~~i~ayrll 296 (706)
+.++..++++ .-|++|+++.+ ++ +...++ +..-.+..++.++.|.+.|+. .+.+=.+-.|-.++.+.++.+
T Consensus 91 ~~l~~l~~~~~~~i~~~l~s~~--~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 91 ELLDELKKLGVDRIRISLESLD--EESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHTTCSEEEEEEBSSS--HHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCccEEecccccCC--HHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 3566667777 78888888754 55 666664 334457778899999999986 444455666666666666653
No 368
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=44.26 E-value=2.6e+02 Score=30.44 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=65.9
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcC
Q 005248 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD 183 (706)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ 183 (706)
+.+=-|.+++ -.+++=++.|.++||+ .++|.+.+||..|. +.|++.|++-=-++.++-+..+++.
T Consensus 27 ~~l~~vvKa~----hg~~~va~~l~~~G~~--~f~va~i~EA~~lr-------~~G~~~~illlg~~~~~~~~~~~~~-- 91 (353)
T cd06815 27 IEVTGVTKVV----CGDPEIAEALLEGGIT--HLADSRIENLKKLK-------DLGISGPKMLLRIPMLSEVEDVVKY-- 91 (353)
T ss_pred CEEEEEEccc----CCCHHHHHHHHHcCCC--EEEeccHHHHHHHH-------hcCCCCCEEEECCCCHHHHHHHHhh--
Confidence 3344445555 2233444567889988 79999999997643 2377545432223444444444443
Q ss_pred ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCC--eEEEecCCCCCchhHHHhhCCChHHHHHH
Q 005248 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 184 kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~--~IRIGvN~GSL~~~il~rygdt~eamVeS 261 (706)
.+-|= +.+ . +.++.+-+.|++.|. .+=|=||.| |.|+|-+|+ .
T Consensus 92 --~~~~~-i~s------------~----------~~~~~l~~~a~~~~~~~~vhlkvDtG------m~R~G~~~~----e 136 (353)
T cd06815 92 --ADISL-NSE------------L----------ETIKALSEEAKKQGKIHKIILMVDLG------DLREGVLPE----D 136 (353)
T ss_pred --cceec-cCh------------H----------HHHHHHHHHHHHcCCccceEEEEecC------CCccccCHH----H
Confidence 11121 111 1 133445566666664 445677888 479997764 3
Q ss_pred HHHHHHHHHHC
Q 005248 262 AFEFARICRKL 272 (706)
Q Consensus 262 Ale~~~i~e~~ 272 (706)
+++.++.+.++
T Consensus 137 ~~~~~~~i~~~ 147 (353)
T cd06815 137 LLDFVEEILKL 147 (353)
T ss_pred HHHHHHHHhCC
Confidence 66677766554
No 369
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=44.24 E-value=2.2e+02 Score=29.97 Aligned_cols=78 Identities=28% Similarity=0.349 Sum_probs=54.1
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
+|++.||.+|-+ ..|.+..++|.++|.+ .| +=|=|-+|--.+ .++.|++ |.++|+++=+ =-=|++.-|+
T Consensus 51 i~~~~~vs~ev~----~~~~~~mi~eA~~l~~~~~-~nv~VKIP~T~~--Gl~Ai~~-L~~~Gi~vn~--T~ifs~~Qa~ 120 (222)
T PRK12656 51 IGDEASIHVQVV----AQDYEGILKDAHEIRRQCG-DDVYIKVPVTPA--GLAAIKT-LKAEGYHITA--TAIYTVFQGL 120 (222)
T ss_pred hCCCCcEEEEEE----ECCHHHHHHHHHHHHHHhC-CCEEEEeCCCHH--HHHHHHH-HHHCCCceEE--eeeCCHHHHH
Confidence 455789999997 4579999999999984 66 424456665443 4555553 5556765443 3368999999
Q ss_pred HHhhh-cCce
Q 005248 177 RVAEC-FDKI 185 (706)
Q Consensus 177 ~a~~~-~~ki 185 (706)
.|+++ ++-|
T Consensus 121 ~Aa~aGa~yv 130 (222)
T PRK12656 121 LAIEAGADYL 130 (222)
T ss_pred HHHHCCCCEE
Confidence 99886 6444
No 370
>CHL00194 ycf39 Ycf39; Provisional
Probab=44.23 E-value=3.3e+02 Score=28.64 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccc
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLE 203 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~ 203 (706)
+.+|.+.|.+ ||+.+-+.+.+..+. ..++. .+.+|+. |+.-...|++.+|-| ||-.+......
T Consensus 17 v~~Ll~~g~~-V~~l~R~~~~~~~l~-------~~~v~-~v~~Dl~-d~~~l~~al~g~d~V-i~~~~~~~~~~------ 79 (317)
T CHL00194 17 VRQALDEGYQ-VRCLVRNLRKASFLK-------EWGAE-LVYGDLS-LPETLPPSFKGVTAI-IDASTSRPSDL------ 79 (317)
T ss_pred HHHHHHCCCe-EEEEEcChHHhhhHh-------hcCCE-EEECCCC-CHHHHHHHHCCCCEE-EECCCCCCCCc------
Confidence 4567889987 777776654443222 12332 3556776 444444555555533 44322111000
Q ss_pred cchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 204 YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
+.-++.. .+-...++++|++.|+. |+ |..+|+.. ..|+..|-. ++=.+.-+++++.|++-.++
T Consensus 80 --~~~~~~~----~~~~~~l~~aa~~~gvk-r~-I~~Ss~~~---~~~~~~~~~--~~K~~~e~~l~~~~l~~til 142 (317)
T CHL00194 80 --YNAKQID----WDGKLALIEAAKAAKIK-RF-IFFSILNA---EQYPYIPLM--KLKSDIEQKLKKSGIPYTIF 142 (317)
T ss_pred --cchhhhh----HHHHHHHHHHHHHcCCC-EE-EEeccccc---cccCCChHH--HHHHHHHHHHHHcCCCeEEE
Confidence 0001111 12335789999999976 55 34455532 134544422 11112223455667765444
No 371
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=44.18 E-value=2e+02 Score=30.10 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=55.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHH
Q 005248 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (706)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (706)
+|...|+.+|-.. .|.+..++|.++|.+.+-. |=|-+|--. +-++.|+. |.++|+++-+=+ =|+..-|+.
T Consensus 50 ~~~~~~v~~qv~~----~d~e~mi~eA~~l~~~~~n-v~IKIP~T~--~Gl~Ai~~-L~~~GI~vn~T~--vfs~~Qa~~ 119 (220)
T PRK12655 50 IGGEGILFAQTMS----RDAQGMVEEAKRLRNAIPG-IVVKIPVTA--EGLAAIKK-LKKEGIPTLGTA--VYSAAQGLL 119 (220)
T ss_pred hCCCCCEEEEEee----CCHHHHHHHHHHHHHhCCC-EEEEeCCCH--HHHHHHHH-HHHCCCceeEeE--ecCHHHHHH
Confidence 4556799999853 4899999999999999866 446677655 33666654 666687665444 588888888
Q ss_pred Hhhh-cC
Q 005248 178 VAEC-FD 183 (706)
Q Consensus 178 a~~~-~~ 183 (706)
|+++ ++
T Consensus 120 Aa~aGa~ 126 (220)
T PRK12655 120 AALAGAK 126 (220)
T ss_pred HHHcCCe
Confidence 8875 54
No 372
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=43.86 E-value=1.3e+02 Score=33.49 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeec-cCCCHHHHHHHhhh--c----CceeeC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAEC--F----DKIRVN 188 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVAD-IHF~~~~Al~a~~~--~----~kiRIN 188 (706)
|.+.+++-+++|++.+.+.+===+|- ++.+.+..++++ +++|+.+| -.|+..-+...++. + |-+.+.
T Consensus 217 ~~~~A~~~~~~l~~~~~~~iEeP~~~-~d~~~~~~L~~~-----~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d 290 (385)
T cd03326 217 DLETAIAYAKALAPYGLRWYEEPGDP-LDYALQAELADH-----YDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFD 290 (385)
T ss_pred CHHHHHHHHHHhhCcCCCEEECCCCc-cCHHHHHHHHhh-----CCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeC
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCe---E
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA---V 234 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~---I 234 (706)
+...|.-. .+.++.+.|..+|++ +
T Consensus 291 ~~~~GGit----------------------~~~kia~lA~a~gi~~~~~ 317 (385)
T cd03326 291 PGLSYGLP----------------------EYLRMLDVLEAHGWSRRRF 317 (385)
T ss_pred chhhCCHH----------------------HHHHHHHHHHHcCCCCcee
No 373
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.68 E-value=3e+02 Score=31.11 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh--cCceee---C
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--FDKIRV---N 188 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~--~~kiRI---N 188 (706)
.+.++.-+++|+.+.+.|..-|.++-++... -|.+.|. +.+..-.++.++. +..+|+ |
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~-------------yG~d~~~----~~~~~~Ll~~l~~~~i~~ir~~~~~ 228 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNS-------------YGVDQPG----FPSFAELLRLVGASGIPRVKFTTSH 228 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccc-------------cccCCCC----cCCHHHHHHHHHhcCCcEEEEccCC
Confidence 4678999999999999998888877443220 0111110 1111112222221 223444 5
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCC--ChHHHHHHHH
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAF 263 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygd--t~eamVeSAl 263 (706)
|-++- .++++..++.+ .-+-||+-+ .|+++|++++- +. +..+
T Consensus 229 p~~i~---------------------------~ell~~l~~~~~g~~~l~igvQS--gs~~vLk~m~R~~~~----~~~~ 275 (440)
T PRK14334 229 PMNFT---------------------------DDVIAAMAETPAVCEYIHLPVQS--GSDRVLRRMAREYRR----EKYL 275 (440)
T ss_pred cccCC---------------------------HHHHHHHHhcCcCCCeEEecccc--CCHHHHHHhCCCCCH----HHHH
Confidence 54441 12556666654 345666655 56888888762 33 4455
Q ss_pred HHHHHHHHCCCC-----cEEEEEecCChhHHHHHHHHHHH
Q 005248 264 EFARICRKLDFH-----NFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 264 e~~~i~e~~~f~-----~iviS~KaSnv~~~i~ayrlla~ 298 (706)
+.++.+++.+++ |+++-+--=+..++.+.++++.+
T Consensus 276 ~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~ 315 (440)
T PRK14334 276 ERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDE 315 (440)
T ss_pred HHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHh
Confidence 566667777654 66666666667777777777654
No 374
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.60 E-value=72 Score=35.23 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCC--CEEEEecC---CHHHHHHHHHHHHhhccCCcC-cceee-ccCCCHHHHHHHhhh-cCcee--eC
Q 005248 119 GTVEEVMRIADQGA--DLVRITVQ---GKREADACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIR--VN 188 (706)
Q Consensus 119 atv~Qi~~L~~aGc--eiVRvtv~---~~~~A~al~~I~~~L~~~g~~-iPLVA-DIHF~~~~Al~a~~~-~~kiR--IN 188 (706)
...+++.+|.+||+ |++=|-+- +....+.+++||+. ++ +|+|+ |+= ++.-|..++++ +|-++ +-
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~-----~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH-----LPETFVIAGNVG-TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh-----CCCCeEEEEecC-CHHHHHHHHHcCcCEEEECCC
Confidence 45789999999955 98877332 23444557777774 76 99999 887 89999999987 88876 45
Q ss_pred CCCC
Q 005248 189 PGNF 192 (706)
Q Consensus 189 PGNi 192 (706)
||-.
T Consensus 171 ~G~~ 174 (326)
T PRK05458 171 PGKV 174 (326)
T ss_pred CCcc
Confidence 6644
No 375
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=43.26 E-value=1.5e+02 Score=32.36 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=74.1
Q ss_pred CCceEEEeccCCCCCCHHH--HHHHHHHHHHcCCCE----EEEecCCHHHHHHHHHHHHhhccCCcCcceeecc---CCC
Q 005248 101 EHPIRVQTMTTNDTKDVAG--TVEEVMRIADQGADL----VRITVQGKREADACFEIKNSLVQKNYNIPLVADI---HFA 171 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~a--tv~Qi~~L~~aGcei----VRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADI---HF~ 171 (706)
..||.+=+||-.. +... +-+=.....++|.-+ .|....+.+..+....+|+. ..++|++|=+ |+.
T Consensus 53 ~~Pi~iaaMtGg~--~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~----~~~~p~i~nl~~~~~~ 126 (333)
T TIGR02151 53 KAPFYINAMTGGS--EEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREE----APNGPLIANIGAPQLV 126 (333)
T ss_pred cCCEEEeCCCCCc--hhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHh----CCCCcEEeecCchhhc
Confidence 6899999997543 1122 112223334556222 45555566667777777764 5689999855 332
Q ss_pred ---HHHHHHHhhh--cCceeeCC--CC-CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 172 ---PSVALRVAEC--FDKIRVNP--GN-FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 172 ---~~~Al~a~~~--~~kiRINP--GN-ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
+..+..+++. .+.+-||- .- ...+. -++| |. .+-+.++.+++.. ++||=+=.+ |
T Consensus 127 ~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~------g~~~--f~----~~le~i~~i~~~~---~vPVivK~~-g-- 188 (333)
T TIGR02151 127 EGGPEEAQEAIDMIEADALAIHLNVLQELVQPE------GDRN--FK----GWLEKIAEICSQL---SVPVIVKEV-G-- 188 (333)
T ss_pred cccHHHHHHHHHHhcCCCEEEcCcccccccCCC------CCcC--HH----HHHHHHHHHHHhc---CCCEEEEec-C--
Confidence 3444455553 44444443 21 11111 1112 21 1222223333322 667632101 1
Q ss_pred chhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 005248 244 SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (706)
Q Consensus 244 ~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~K 282 (706)
+|. ..+.++.|++.|.+-|++|--
T Consensus 189 -------~g~--------~~~~a~~L~~aGvd~I~Vsg~ 212 (333)
T TIGR02151 189 -------FGI--------SKEVAKLLADAGVSAIDVAGA 212 (333)
T ss_pred -------CCC--------CHHHHHHHHHcCCCEEEECCC
Confidence 121 257889999999999999864
No 376
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=43.22 E-value=75 Score=36.73 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=50.9
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|+|-++-.+.+.-++-++++.++||+.|+|. .-++ +..+-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 143 ~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~-----~~vpI~~H~Hnt~GlA~AN~laA 217 (467)
T PRK14041 143 SYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK-----FGVPVEVHSHCTTGLASLAYLAA 217 (467)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHh-----cCCceEEEecCCCCcHHHHHHHH
Confidence 5554445578888899999999999988886 2222 445556666664 56898777777766666 56
Q ss_pred hhh-cCcee
Q 005248 179 AEC-FDKIR 186 (706)
Q Consensus 179 ~~~-~~kiR 186 (706)
+++ ++-|=
T Consensus 218 ieaGad~vD 226 (467)
T PRK14041 218 VEAGADMFD 226 (467)
T ss_pred HHhCCCEEE
Confidence 665 66554
No 377
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.12 E-value=4.7e+02 Score=28.36 Aligned_cols=124 Identities=22% Similarity=0.404 Sum_probs=77.1
Q ss_pred CCCEEEEecCCH------HHHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhh-cCceeeCC--CCCCcchhhcc
Q 005248 131 GADLVRITVQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIRVNP--GNFADRRAQFE 200 (706)
Q Consensus 131 GceiVRvtv~~~------~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~-~~kiRINP--GNig~~~k~F~ 200 (706)
|.+.|-+-|-+. +-.+.++.-+ .|.++|+. +|.++| |+..|...++. ++-| -| -=||.+..
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~-~L~~~Gf~vlpyc~d---d~~~ar~l~~~G~~~v--mPlg~pIGsg~G--- 160 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAE-ILVKEGFTVLPYCTD---DPVLAKRLEDAGCAAV--MPLGSPIGSGQG--- 160 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHH-HHHHCCCEEEEEeCC---CHHHHHHHHHcCCCEe--CCCCcCCCCCCC---
Confidence 779999987552 1233333333 45566887 789988 56777766665 7777 77 66776532
Q ss_pred ccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 005248 201 QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 201 ~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS 280 (706)
..+. +.++.+++. .++|+=++-.-|+ | +.+..+-++|.+-+++-
T Consensus 161 ---i~~~----------~~I~~I~e~---~~vpVI~egGI~t------------p--------eda~~AmelGAdgVlV~ 204 (248)
T cd04728 161 ---LLNP----------YNLRIIIER---ADVPVIVDAGIGT------------P--------SDAAQAMELGADAVLLN 204 (248)
T ss_pred ---CCCH----------HHHHHHHHh---CCCcEEEeCCCCC------------H--------HHHHHHHHcCCCEEEEC
Confidence 1111 122223222 4688866654333 3 23444445888877764
Q ss_pred ---EecCChhHHHHHHHHHHHh
Q 005248 281 ---MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 281 ---~KaSnv~~~i~ayrlla~~ 299 (706)
.|+.||..|.++|+.-.+.
T Consensus 205 SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 205 TAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred hHhcCCCCHHHHHHHHHHHHHH
Confidence 5999999999999987765
No 378
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=42.83 E-value=23 Score=39.17 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=34.8
Q ss_pred CCCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-Ccceee
Q 005248 113 DTKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (706)
Q Consensus 113 ~T~Dv~atv~----Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 166 (706)
..-|-++|++ |....++||||+| +--||=+ --+..||+.|++.|+ ++|+++
T Consensus 138 g~idND~Tl~~Lak~Al~~A~AGADiV--APSdMMD-GrV~aIR~aLd~~g~~~v~ImS 193 (324)
T PF00490_consen 138 GEIDNDETLERLAKQALSHAEAGADIV--APSDMMD-GRVGAIREALDEAGFSDVPIMS 193 (324)
T ss_dssp SSBEHHHHHHHHHHHHHHHHHHT-SEE--EE-S--T-THHHHHHHHHHHTTCTTSEEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHhCCCee--ccccccC-CHHHHHHHHHHhCCCCCccEEe
Confidence 3445566654 5566799999997 2223333 457889999999999 699986
No 379
>PLN02537 diaminopimelate decarboxylase
Probab=42.58 E-value=3.2e+02 Score=30.30 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCC---------
Q 005248 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF--------- 192 (706)
Q Consensus 122 ~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNi--------- 192 (706)
+++....+.| |++++.+.++.+.+.++.+++ +..+++ -+|||||.-
T Consensus 100 ~~l~~a~~~g---v~i~ids~~el~~l~~~a~~~---~~~~~v-------------------~lRvnp~~~~~~~~~i~t 154 (410)
T PLN02537 100 EDLVLAAQEG---VFVNVDSEFDLENIVEAARIA---GKKVNV-------------------LLRINPDVDPQVHPYVAT 154 (410)
T ss_pred HHHHHHHHCC---CEEEECCHHHHHHHHHHHHhc---CCCceE-------------------EEEECCCCCCCCCCcccc
Confidence 4566666667 357888888888887776541 222211 269999752
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc--CCe-EEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHH
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRA-VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~--~~~-IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~ 269 (706)
|....+|-... +.+.++++.++++ ++. +=|=+-.||-..+ .+. -....+.++++++.+
T Consensus 155 G~~~sRfGi~~--------------~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~-~~~----~~~~~~~~~~~~~~~ 215 (410)
T PLN02537 155 GNKNSKFGIRN--------------EKLQWFLDAVKAHPNELKLVGAHCHLGSTITK-VDI----FRDAAVLMVNYVDEI 215 (410)
T ss_pred CCCCCCCCCCH--------------HHHHHHHHHHHhCCCCCcEEEEEeccCCCCCc-hHH----HHHHHHHHHHHHHHH
Confidence 22112343221 2355677777776 433 2333444554221 011 133445567777778
Q ss_pred HHCCCC
Q 005248 270 RKLDFH 275 (706)
Q Consensus 270 e~~~f~ 275 (706)
++.|++
T Consensus 216 ~~~g~~ 221 (410)
T PLN02537 216 RAQGFE 221 (410)
T ss_pred HHcCCC
Confidence 777753
No 380
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=42.40 E-value=66 Score=33.43 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCCch----hHHHhhC-C-ChHHHHHHHHHHHHHHHHCCCCcEE
Q 005248 219 VFSPLVEKCKKYGRAVRIGTNHGSLSD----RIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFL 278 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IRIGvN~GSL~~----~il~ryg-d-t~eamVeSAle~~~i~e~~~f~~iv 278 (706)
.-.+.++.++++|+++.|-+|..+-+. +.++++| + +++.++-|+.--++.+.+.++.-++
T Consensus 25 ~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~ 90 (257)
T TIGR01458 25 GSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLRPML 90 (257)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCCeEE
Confidence 445688999999999999999988863 3445567 4 7888999998888888887765444
No 381
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=42.26 E-value=3.8e+02 Score=27.08 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC-----CHHH----------HH
Q 005248 114 TKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-----APSV----------AL 176 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiV--Rvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF-----~~~~----------Al 176 (706)
....+..++.+.++=-.|.|+. +.-.++.+. +.++++.|.+.|..+...+=..+ ++.. ++
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~---~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSPGDLFPADYKE---LAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAI 90 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCCcccCCchhhh---HHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHH
Confidence 5667777777777666667766 555555444 56666666666666554333332 2210 22
Q ss_pred H-Hhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCC
Q 005248 177 R-VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS 254 (706)
Q Consensus 177 ~-a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt 254 (706)
+ |.+. ++.+-+-||........ . -+...+ ++..+.+.++.+.|+++++.+.+.-+ ..
T Consensus 91 ~~a~~lg~~~vv~~~g~~~~~~~~-~---~~~~~~----~~~~~~l~~l~~~a~~~~i~l~~e~~-------------~~ 149 (274)
T COG1082 91 ELAKELGAKVVVVHPGLGAGADDP-D---SPEEAR----ERWAEALEELAEIAEELGIGLALENH-------------HH 149 (274)
T ss_pred HHHHHcCCCeEEeecccCCcCCCC-C---CCcccH----HHHHHHHHHHHHHHHHhCCceEEeec-------------CC
Confidence 3 2233 66677779988764421 0 122223 55566777799999999777766641 11
Q ss_pred hHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHH----HHHHHHHHHh
Q 005248 255 PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM----VQAYRLLVAE 299 (706)
Q Consensus 255 ~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~----i~ayrlla~~ 299 (706)
+..++++.-..++++.+.+=+++.+-+=.+..... ++..+.+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~v~~~lD~~H~~~~~~d~~~~~~~~~~r 198 (274)
T COG1082 150 PGNVVETGADALDLLREVDSPNVGLLLDTGHAFFAGEDPLEAIRKLGDR 198 (274)
T ss_pred ccceeecCHHHHHHHHhcCCCceEEEEecCchhhccCCHHHHHHHhhcc
Confidence 23445555446777777777777777766655444 4555555544
No 382
>PRK00955 hypothetical protein; Provisional
Probab=41.93 E-value=3.1e+02 Score=33.08 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=51.7
Q ss_pred eEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHHCCCC-----cEEEEEecCChhHHHHHHHHHHHhhhcCCCC
Q 005248 233 AVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFH-----NFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (706)
Q Consensus 233 ~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~~~f~-----~iviS~KaSnv~~~i~ayrlla~~~~~eg~~ 306 (706)
-+.||+-||| +++|++++- +.+..-+-.-++.+++++.|.+ +++++.=-....++.+.++.+-+ .++
T Consensus 436 ~L~IapESgS--d~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflke----l~~- 508 (620)
T PRK00955 436 QLKVAPEHIS--DRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKD----LGY- 508 (620)
T ss_pred CceeCcCCCC--hHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHH----cCC-
Confidence 3788887664 789999874 3332233333567888898875 56666666666666666655533 333
Q ss_pred CcccccccccCCCCCCchhhHH
Q 005248 307 YPLHLGVTEAGEGEDGRMKSAI 328 (706)
Q Consensus 307 YPLHLGVTEAG~g~~G~IKSav 328 (706)
.+.|+-.- +...|+..+++
T Consensus 509 ~~~qV~~f---TP~PGT~At~M 527 (620)
T PRK00955 509 QPEQVQDF---YPTPGTLSTTM 527 (620)
T ss_pred Ccceeeee---ecCCCcchhhc
Confidence 34554332 35667766655
No 383
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=41.76 E-value=65 Score=32.49 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 005248 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~ 287 (706)
|+.++++.||+-|- =|||+ -+=-||.+.|--+.+|++..||+=+-+.+|+-.+.
T Consensus 42 RveEiieFak~mgy-kkiGi--------------AfCiGL~~EA~~~~~iL~~~gFev~sV~CKvg~i~ 95 (157)
T PF08901_consen 42 RVEEIIEFAKRMGY-KKIGI--------------AFCIGLRKEARILAKILEANGFEVYSVCCKVGGID 95 (157)
T ss_pred hHHHHHHHHHHcCC-Ceeee--------------hhhHhHHHHHHHHHHHHHHCCCEEEEEEecCCCcc
Confidence 77789999999884 37777 33468999999999999999999999999998765
No 384
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.75 E-value=2.5e+02 Score=29.65 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=69.8
Q ss_pred cceeeccCCCHHHHHHHhh----h-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 162 IPLVADIHFAPSVALRVAE----C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 162 iPLVADIHF~~~~Al~a~~----~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
+|.=.|--.|+.....-++ . ++.|=+| |..|... ..|++|+.+=++ .+++.++ ..+||=.
T Consensus 11 TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~------~ls~~Er~~~~~-------~~~~~~~-~~~~vi~ 75 (292)
T PRK03170 11 TPFKEDGSVDFAALRKLVDYLIANGTDGLVVV-GTTGESP------TLTHEEHEELIR-------AVVEAVN-GRVPVIA 75 (292)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEC-CcCCccc------cCCHHHHHHHHH-------HHHHHhC-CCCcEEe
Confidence 4555566666554443333 2 6666665 8887632 356666554333 2334443 3578888
Q ss_pred ecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHh
Q 005248 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~----KaSnv~~~i~ayrlla~~ 299 (706)
||.+.|+ +.+++.++.+++.|.+-+.+.. +.| ...+++-|+.+++.
T Consensus 76 gv~~~~~----------------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~-~~~i~~~~~~ia~~ 125 (292)
T PRK03170 76 GTGSNST----------------AEAIELTKFAEKAGADGALVVTPYYNKPT-QEGLYQHFKAIAEA 125 (292)
T ss_pred ecCCchH----------------HHHHHHHHHHHHcCCCEEEECCCcCCCCC-HHHHHHHHHHHHhc
Confidence 9877666 4578899999999999998843 434 47899999999987
No 385
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.74 E-value=1.5e+02 Score=32.43 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcCce
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDKI 185 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~ki 185 (706)
+.++.++++.++.+.|-.-+.+-+-. .++++.+..||+. -|-++.|..|-|- +..-|++.++.++.+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~d~~~v~~vRe~---~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 208 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGRDPRRDPDRVAAARRA---IGPDAELFVDANGAYSRKQALALARAFADE 208 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCHHHHHHHHHHHHHH---cCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56788999999999999999987732 5678888888875 3557999999986 456666666666654
No 386
>PRK05481 lipoyl synthase; Provisional
Probab=41.73 E-value=4.6e+02 Score=28.15 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccC--CcCcceeeccCCCH--HHHHHHhhh-cCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQK--NYNIPLVADIHFAP--SVALRVAEC-FDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~-----~~A~al~~I~~~L~~~--g~~iPLVADIHF~~--~~Al~a~~~-~~k 184 (706)
.+.+.-++++.++.+.|+.-|-++-++. ...+.+.++-+.|.+. ++.+-++. -|+.. .......+. ++-
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~-~~~~~~~e~L~~l~~ag~~i 158 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLI-PDFRGRMDALLTVLDARPDV 158 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEc-cCCCCCHHHHHHHHhcCcce
Confidence 6788889999999999998888885542 1233444444444432 22232222 13321 222222221 221
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHH--hhHHhhHHHHHHHHHHc--CCeEEEecCCCCCchhHHHhhCCChHHHHH
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKEL--QHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El--~~I~~~f~~vv~~ake~--~~~IRIGvN~GSL~~~il~rygdt~eamVe 260 (706)
+..|. ... + +..+.+ ..-.+.+..+++.+++. |++++-|+=-| +|.|.+.+
T Consensus 159 ~~~~~--ets-~-----------~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvG---------fGET~ed~-- 213 (289)
T PRK05481 159 FNHNL--ETV-P-----------RLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVG---------LGETDEEV-- 213 (289)
T ss_pred eeccc--cCh-H-----------HHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEE---------CCCCHHHH--
Confidence 22110 000 0 000000 00123567789999999 99988666333 25566544
Q ss_pred HHHHHHHHHHHCCCCcEEE
Q 005248 261 SAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 261 SAle~~~i~e~~~f~~ivi 279 (706)
.++++.+++++|+.+-+
T Consensus 214 --~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 214 --LEVMDDLRAAGVDILTI 230 (289)
T ss_pred --HHHHHHHHhcCCCEEEE
Confidence 45788899999988877
No 387
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=41.70 E-value=87 Score=32.49 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 119 GTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~-----~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
-|++|....++|||++|-.=+..+ ...+.+++|.+-+++.|+++.++|=--=|++-+++++.. +|-+=|.|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 110 FSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred cCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 468999999999999996665544 457788899998989999999988877788888888776 99999888766
No 388
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=41.66 E-value=1.5e+02 Score=32.55 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=76.9
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccC
Q 005248 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQK 158 (706)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----------v~~~~~A~al~~I~~~L~~~ 158 (706)
+-|.++++.+|++++.+|= .--..-..-|-.++-.+.+.++|++++|-- .|+..+ +.|+..++. +.
T Consensus 31 tivd~~~~~~g~~~~~~vi-AGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge-~gL~~l~~a--~~ 106 (286)
T COG2876 31 TIVDVGDVVIGEGRALRVI-AGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGE-EGLKLLKRA--AD 106 (286)
T ss_pred eeeccccceecCCcceEEE-ecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCH-HHHHHHHHH--HH
Confidence 4567788999999632221 111122233444555567788999999964 455443 444444442 22
Q ss_pred CcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 159 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 159 g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
-+..|+|.-|- |++-...+++++|=++|--+|+-+ |+ |++.+-..++||
T Consensus 107 ~~Gl~vvtEvm-~~~~~e~~~~y~DilqvGARNMQN----F~----------------------LLke~G~~~kPv 155 (286)
T COG2876 107 ETGLPVVTEVM-DVRDVEAAAEYADILQVGARNMQN----FA----------------------LLKEVGRQNKPV 155 (286)
T ss_pred HcCCeeEEEec-CHHHHHHHHhhhhHHHhcccchhh----hH----------------------HHHHhcccCCCe
Confidence 47899998874 667777788889999999999954 33 888888888998
No 389
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=41.42 E-value=4.1e+02 Score=27.24 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=42.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCccee-eccCCCHHHHHHHhhhcCceee
Q 005248 109 MTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV-ADIHFAPSVALRVAECFDKIRV 187 (706)
Q Consensus 109 Mt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV-ADIHF~~~~Al~a~~~~~kiRI 187 (706)
..+..+.|... |+.++.+.++|.|=+...+...+..++.+ ++.|+++|++ .+...++.+...+-+..+.+..
T Consensus 169 ~~~~~~~d~~~---~~~~l~~~~pdaIi~~~~~~~~~~~~~~l----~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~~~ 241 (312)
T cd06333 169 RYGRTDTSVTA---QLLKIRAARPDAVLIWGSGTPAALPAKNL----RERGYKGPIYQTHGVASPDFLRLAGKAAEGAIL 241 (312)
T ss_pred eeCCCCcCHHH---HHHHHHhCCCCEEEEecCCcHHHHHHHHH----HHcCCCCCEEeecCcCcHHHHHHhhHhhcCcEe
Confidence 33334456544 55566667899887766555444444444 4469999998 5555555554444345666653
No 390
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=41.36 E-value=2.7e+02 Score=29.34 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=88.0
Q ss_pred EEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCC-CEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCC
Q 005248 92 MVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGA-DLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF 170 (706)
Q Consensus 92 ~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGc-eiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF 170 (706)
.+|-+.|||.|- | +.|.+-.+++++-|- |. .++.+. -...|.+++.+...+.|++.-+=+
T Consensus 16 ~~~~~~lgg~~~---------d----~~t~~a~~~~~~rgr~ef----~~~~e~--~~~~i~~e~~~~~~~~~vivnv~~ 76 (231)
T TIGR00736 16 LFAIVTLGGYNA---------D----RATYKASRDIEKRGRKEF----SFNLEE--FNSYIIEQIKKAESRALVSVNVRF 76 (231)
T ss_pred CcCEEEECCccC---------C----HHHHHHHHHHHHcCCccc----CcCccc--HHHHHHHHHHHHhhcCCEEEEEec
Confidence 388899999752 2 345555566666663 32 233222 344555555554456799999988
Q ss_pred -CHHHHHHHhh----hcCceeeCCCC---------CCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 171 -APSVALRVAE----CFDKIRVNPGN---------FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 171 -~~~~Al~a~~----~~~kiRINPGN---------ig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
++.-+.++++ .++-|=||-|= .|. .|-+=.+++.++|+.+++.++|+=+
T Consensus 77 ~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~-----------------~Ll~dp~~l~~iv~av~~~~~PVsv 139 (231)
T TIGR00736 77 VDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQ-----------------ELLKNKELLKEFLTKMKELNKPIFV 139 (231)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCch-----------------hhcCCHHHHHHHHHHHHcCCCcEEE
Confidence 7777776665 37888899773 222 1111134667788888877777522
Q ss_pred ecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCC
Q 005248 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSn 285 (706)
=+--| .+. +..+++++.+++.|.+-|.|...-+.
T Consensus 140 KiR~~-----------~~~----~~~~~~a~~l~~aGad~i~Vd~~~~g 173 (231)
T TIGR00736 140 KIRGN-----------CIP----LDELIDALNLVDDGFDGIHVDAMYPG 173 (231)
T ss_pred EeCCC-----------CCc----chHHHHHHHHHHcCCCEEEEeeCCCC
Confidence 22111 011 23468899999999999999765554
No 391
>PLN00191 enolase
Probab=41.31 E-value=1e+02 Score=35.53 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCC-HHHHHHHHHHHHhhccCCcCcceeecc--CCCHHHHHHHhh--hcCceeeC
Q 005248 115 KDVAGTVEEVMRIAD-QGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAE--CFDKIRVN 188 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~-aGceiVRvtv~~-~~~A~al~~I~~~L~~~g~~iPLVADI--HF~~~~Al~a~~--~~~kiRIN 188 (706)
.+.+..++=...|.+ .+ |+=|-=|= .++-+.+.+++++ ..+||++|= ..|++.+..+++ +++.|-|-
T Consensus 295 ~s~~e~i~~~~~L~~~y~--I~~IEDPl~~~D~eg~~~Lt~~-----~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iK 367 (457)
T PLN00191 295 KSGDELIDLYKEFVSDYP--IVSIEDPFDQDDWEHWAKLTSL-----EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLK 367 (457)
T ss_pred cCHHHHHHHHHHHhhcCC--cEEEECCCCcccHHHHHHHHcc-----CCCcEEccCcccCCHHHHHHHHHhCCCCEEEec
Confidence 466666666666655 33 43333332 2456777777764 789999964 467888888887 49999999
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
|..+|.-. ...++++.|+++|+++=||-
T Consensus 368 l~qiGGIT----------------------ea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 368 VNQIGTVT----------------------ESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ccccCCHH----------------------HHHHHHHHHHHCCCEEEeCC
Confidence 99999843 45779999999999985553
No 392
>PRK12928 lipoyl synthase; Provisional
Probab=41.18 E-value=4.4e+02 Score=28.51 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHcC--CeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE-----------ecC
Q 005248 218 EVFSPLVEKCKKYG--RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-----------KAS 284 (706)
Q Consensus 218 ~~f~~vv~~ake~~--~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~-----------KaS 284 (706)
++...+++.|++.| +.+.-|.=-| +|.|.+. -+++++.+++++++.+-|.- +-=
T Consensus 188 e~~le~l~~ak~~gp~i~~~s~iIvG---------~GET~ed----~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~ 254 (290)
T PRK12928 188 QRSLDLLARAKELAPDIPTKSGLMLG---------LGETEDE----VIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRY 254 (290)
T ss_pred HHHHHHHHHHHHhCCCceecccEEEe---------CCCCHHH----HHHHHHHHHhcCCCEEEEEcCCCCCccCCceeec
Confidence 35677899999998 6665554233 2556644 45678889999998887732 112
Q ss_pred ChhHHHHHHHHHHHh
Q 005248 285 NPVVMVQAYRLLVAE 299 (706)
Q Consensus 285 nv~~~i~ayrlla~~ 299 (706)
-.+.--+.|+..+..
T Consensus 255 ~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 255 WTPEEFEALGQIARE 269 (290)
T ss_pred cCHHHHHHHHHHHHH
Confidence 234456667777765
No 393
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.15 E-value=10 Score=35.64 Aligned_cols=14 Identities=50% Similarity=1.381 Sum_probs=12.5
Q ss_pred ccCCCCcccccHHH
Q 005248 644 SCPSCGRTLFDLQE 657 (706)
Q Consensus 644 SCPsCGRTlfDLq~ 657 (706)
.||+||...|||..
T Consensus 11 ~Cp~CG~kFYDLnk 24 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK 24 (108)
T ss_pred cCCCCcchhccCCC
Confidence 59999999999965
No 394
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.14 E-value=2.6e+02 Score=29.28 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=68.2
Q ss_pred cceeeccCCCHHHHH----HHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 162 IPLVADIHFAPSVAL----RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 162 iPLVADIHF~~~~Al----~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
+|.=+|--.|..... ..++. ++.|=+| |..|... ..|++|+.+=++. +++.+ ...++|=+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~------~lt~~Er~~l~~~-------~~~~~-~~~~~vi~ 74 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIENGTDGLVVC-GTTGESP------TLSDEEHEAVIEA-------VVEAV-NGRVPVIA 74 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEC-CCCcchh------hCCHHHHHHHHHH-------HHHHh-CCCCcEEe
Confidence 455555555544333 33333 7777777 8887633 3456655433222 23333 24578888
Q ss_pred ecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHh
Q 005248 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~----KaSnv~~~i~ayrlla~~ 299 (706)
||..-|. +.+++.++.+++.|++-+.+.- |.| ...+++-|+.+++.
T Consensus 75 gv~~~~~----------------~~~~~~a~~a~~~G~d~v~~~~P~~~~~~-~~~l~~~~~~ia~~ 124 (284)
T cd00950 75 GTGSNNT----------------AEAIELTKRAEKAGADAALVVTPYYNKPS-QEGLYAHFKAIAEA 124 (284)
T ss_pred ccCCccH----------------HHHHHHHHHHHHcCCCEEEEcccccCCCC-HHHHHHHHHHHHhc
Confidence 8866655 3468899999999999988863 444 37899999999987
No 395
>PRK07328 histidinol-phosphatase; Provisional
Probab=41.06 E-value=69 Score=33.46 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 005248 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (706)
Q Consensus 217 ~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrll 296 (706)
++.+.+++++|+++|+++=| |.++|-+..-..| | ..+.+++|.++|.. |+|+-=|-++...-..+...
T Consensus 176 ~~~~~~il~~~~~~g~~lEi--Nt~~~r~~~~~~y---p------~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a 243 (269)
T PRK07328 176 TELYEEALDVIAAAGLALEV--NTAGLRKPVGEIY---P------SPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEA 243 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEE--EchhhcCCCCCCC---C------CHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHH
Confidence 35667899999999999965 6666644321111 2 23688888888885 88888888887765444443
Q ss_pred HHhh
Q 005248 297 VAEM 300 (706)
Q Consensus 297 a~~~ 300 (706)
.+.+
T Consensus 244 ~~~l 247 (269)
T PRK07328 244 LALL 247 (269)
T ss_pred HHHH
Confidence 3333
No 396
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.02 E-value=4e+02 Score=26.96 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=83.6
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-------------HHHHHHHHHHhhccCCcCcceeeccCC
Q 005248 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-------------EADACFEIKNSLVQKNYNIPLVADIHF 170 (706)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~-------------~A~al~~I~~~L~~~g~~iPLVADIHF 170 (706)
..+|+++.....|++..++ .+.++|.+.+|+-.+--+ ..+.+.+..+..++.|+
T Consensus 56 ~~~~~~~~~~~~~i~~~~~---~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~---------- 122 (237)
T PF00682_consen 56 ARLQALCRANEEDIERAVE---AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY---------- 122 (237)
T ss_dssp SEEEEEEESCHHHHHHHHH---HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS----------
T ss_pred cccceeeeehHHHHHHHHH---hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC----------
Confidence 5667777777666666554 566899999999976644 12222222222233333
Q ss_pred CHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCe-EEEecCCCCCchhHHH
Q 005248 171 APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS 249 (706)
Q Consensus 171 ~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~-IRIGvN~GSL~~~il~ 249 (706)
++++|+-.... |+ .+.+.++++.+.+.|.. |+|.=-.|.+.+.
T Consensus 123 -------------~v~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~--- 166 (237)
T PF00682_consen 123 -------------EVAFGCEDASR---------TD-----------PEELLELAEALAEAGADIIYLADTVGIMTPE--- 166 (237)
T ss_dssp -------------EEEEEETTTGG---------SS-----------HHHHHHHHHHHHHHT-SEEEEEETTS-S-HH---
T ss_pred -------------ceEeCcccccc---------cc-----------HHHHHHHHHHHHHcCCeEEEeeCccCCcCHH---
Confidence 33566544422 11 22455677777777754 4544445555443
Q ss_pred hhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCC
Q 005248 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (706)
Q Consensus 250 rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~ 320 (706)
.+ -+.++.+.+. +.++.|++-..|-.-|--|+-+.|-+ .|.++ +=+|=.|.|+
T Consensus 167 -------~v----~~lv~~~~~~-~~~~~l~~H~Hnd~Gla~An~laA~~---aGa~~---id~t~~GlG~ 219 (237)
T PF00682_consen 167 -------DV----AELVRALREA-LPDIPLGFHAHNDLGLAVANALAALE---AGADR---IDGTLGGLGE 219 (237)
T ss_dssp -------HH----HHHHHHHHHH-STTSEEEEEEBBTTS-HHHHHHHHHH---TT-SE---EEEBGGGGSS
T ss_pred -------HH----HHHHHHHHHh-ccCCeEEEEecCCccchhHHHHHHHH---cCCCE---EEccCccCCC
Confidence 22 2333333332 33489999999988888888776654 67777 5556666664
No 397
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=40.94 E-value=1.9e+02 Score=32.57 Aligned_cols=73 Identities=10% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcC--CCEEEEecCCH---HHHHHHHHHHHhhccCCc-CcceeeccCCCHHHHHHHhhh-cCcee--eC
Q 005248 118 AGTVEEVMRIADQG--ADLVRITVQGK---READACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIR--VN 188 (706)
Q Consensus 118 ~atv~Qi~~L~~aG--ceiVRvtv~~~---~~A~al~~I~~~L~~~g~-~iPLVADIHF~~~~Al~a~~~-~~kiR--IN 188 (706)
+...+.+..|.++| .|++=|-+-.- .-.+.++.||+. + +.++||===-++.-|..++++ +|.|+ |-
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-----~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiG 180 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-----FPEHTIMAGNVVTGEMVEELILSGADIVKVGIG 180 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-----CCCCeEEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 45678999999996 89888876543 444556666664 4 378888756678999999887 99888 45
Q ss_pred CCCCCcc
Q 005248 189 PGNFADR 195 (706)
Q Consensus 189 PGNig~~ 195 (706)
||-+-..
T Consensus 181 pGSictt 187 (343)
T TIGR01305 181 PGSVCTT 187 (343)
T ss_pred CCCcccC
Confidence 9987543
No 398
>PLN02428 lipoic acid synthase
Probab=40.91 E-value=5.7e+02 Score=28.76 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHhhccCC----cCcceeeccCCCHHHHHHHhhh-cCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKN----YNIPLVADIHFAPSVALRVAEC-FDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~-----~~~A~al~~I~~~L~~~g----~~iPLVADIHF~~~~Al~a~~~-~~k 184 (706)
.|.+.-++.+.++.+.|..-|=|+..+ ...++.+.++.+.|++.. +.+ |+.|+.-+..++..-.++ ++-
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~-L~pdf~~d~elL~~L~eAG~d~ 208 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEA-LVPDFRGDLGAVETVATSGLDV 208 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEE-eCccccCCHHHHHHHHHcCCCE
Confidence 456666677777888899877776442 244555555555555543 222 345666566555444443 444
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHh--h-HHhhHHHHHHHHHHc--CCeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQ--H-IEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~--~-I~~~f~~vv~~ake~--~~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
-++|+=. -+.+...+. + =.++...+++.||+. |+.++-|.=-| +|.|.+.+
T Consensus 209 ---i~hnlET-----------v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG---------LGET~Edv- 264 (349)
T PLN02428 209 ---FAHNIET-----------VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG---------LGETDEEV- 264 (349)
T ss_pred ---EccCccC-----------cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe---------cCCCHHHH-
Confidence 3355422 122223332 1 135567788889998 88877665322 35666544
Q ss_pred HHHHHHHHHHHHCCCCcEEE-----------EEecCChhHHHHHHHHHHHh
Q 005248 260 ESAFEFARICRKLDFHNFLF-----------SMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 260 eSAle~~~i~e~~~f~~ivi-----------S~KaSnv~~~i~ayrlla~~ 299 (706)
.+.++.++++|++-+-| |++.==.+.--+.|+..+..
T Consensus 265 ---~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 265 ---VQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred ---HHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 45778888999755444 44444445566777777766
No 399
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.85 E-value=2.3e+02 Score=28.73 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHHHHhhccCCcCcceeeccCCC-HHHHHHHhhh-cCceee
Q 005248 120 TVEEVMRIADQGADLVRITVQGK------READACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRV 187 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~------~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~Al~a~~~-~~kiRI 187 (706)
-+++++.+.+.|++.+=+.--+. +.++.+++|.+. +++|++.+-=.+ ..-+..+++. +++|=|
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-----~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~i 104 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-----VGVPVQLGGGIRSAEDAASLLDLGVDRVIL 104 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-----cCCcEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 35567777889999876654332 334566677664 789999853333 4445555555 887744
No 400
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=40.84 E-value=3.7e+02 Score=31.41 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=106.8
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHH
Q 005248 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (706)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (706)
++...|-+.--.-.-..=++.-.+-|.-..+.|+|+|=++ |.+.+ .+.++|+.|.+.+-+++++|=|- -.-|++
T Consensus 155 ~~~kgin~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~---di~~~r~~l~~~~~~~~iiakIE--t~~av~ 229 (480)
T cd00288 155 GSRKGVNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKAS---DVLEIREVLGEKGKDIKIIAKIE--NQEGVN 229 (480)
T ss_pred cCCCceEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHH---HHHHHHHHHHhcCCCceEEEEEC--CHHHHH
Confidence 5556666543211111112333444556678899998777 55554 45555555556677899999884 344443
Q ss_pred Hhh----hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC-
Q 005248 178 VAE----CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG- 252 (706)
Q Consensus 178 a~~----~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg- 252 (706)
-++ .+|.|=|-||.+|-.-. .+++.+..+.++++|+++|+|+=+.+ .+|+-+-
T Consensus 230 nldeI~~~~DgImIargDLg~e~g---------------~~~v~~~qk~ii~~~~~~gkpvi~AT-------qmLeSM~~ 287 (480)
T cd00288 230 NFDEILEASDGIMVARGDLGVEIP---------------AEEVFLAQKMLIAKCNLAGKPVITAT-------QMLESMIY 287 (480)
T ss_pred hHHHHHHhcCEEEECcchhhhhcC---------------hHHHHHHHHHHHHHHHHcCCCEEEEc-------hhHHHHhh
Confidence 332 39999999999986321 35556667789999999999995554 2333321
Q ss_pred -CCh-HHHHHHHHHHHHHHHHCCCCcEEEEE---ecCChhHHHHHHHHHHHhhhc
Q 005248 253 -DSP-RGMVESAFEFARICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYV 302 (706)
Q Consensus 253 -dt~-eamVeSAle~~~i~e~~~f~~iviS~---KaSnv~~~i~ayrlla~~~~~ 302 (706)
+.| .|= .--+.-+-.-|.+-+.+|- +-..|...|+.-+.++++.|+
T Consensus 288 ~p~PTRAE----vtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~ 338 (480)
T cd00288 288 NPRPTRAE----VSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEK 338 (480)
T ss_pred CCCCCchh----hHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 112 010 0112223345899999974 455688888888888888664
No 401
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=40.58 E-value=2e+02 Score=29.44 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC-----CCHHHHHHHhhhcCceeeC
Q 005248 115 KDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-----FAPSVALRVAECFDKIRVN 188 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~-aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-----F~~~~Al~a~~~~~kiRIN 188 (706)
.+.....+++.++.. ++..|+=|.+.+....+...+..+.+.+.|+.-..+-+++ .++. ..+.++.++.|=++
T Consensus 12 ~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~-~~~~l~~ad~I~~~ 90 (217)
T cd03145 12 YDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPE-VVARLRDADGIFFT 90 (217)
T ss_pred cCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHH-HHHHHHhCCEEEEe
Confidence 355666677766664 6788888888877667778888888888887644443443 3443 34566778999999
Q ss_pred CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 189 PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
-||--. |.+.|.. ..+...+..+-++|+++ +|+.+|+.
T Consensus 91 GG~~~~--------------~~~~l~~--t~l~~~l~~~~~~G~v~-~G~SAGA~ 128 (217)
T cd03145 91 GGDQLR--------------ITSALGG--TPLLDALRKVYRGGVVI-GGTSAGAA 128 (217)
T ss_pred CCcHHH--------------HHHHHcC--ChHHHHHHHHHHcCCEE-EEccHHHH
Confidence 998622 2222221 13444555555688776 89999987
No 402
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.52 E-value=1.1e+02 Score=31.95 Aligned_cols=177 Identities=16% Similarity=0.301 Sum_probs=105.3
Q ss_pred cCCCCceEEEeccC---CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee--------
Q 005248 98 IGSEHPIRVQTMTT---NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA-------- 166 (706)
Q Consensus 98 IGG~~PI~VQSMt~---t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA-------- 166 (706)
|||+ -+.|++|.. .|..+.+-+..|+++|.+| |+|=..=.+.+ .-+.++.+.+. + .++++
T Consensus 19 I~gd-~v~V~~l~p~~g~dpH~y~~~p~d~~~l~~A--Dliv~~G~~lE--~~~~k~~~~~~--~--~~v~~~~~~~~~~ 89 (264)
T cd01020 19 VGGD-HVEVTSIITNPDVDPHDFEPTPTDAAKVSTA--DIVVYNGGGYD--PWMTKLLADTK--D--VIVIAADLDGHDD 89 (264)
T ss_pred HcCC-ceEEEEecCCCCCCcccCCCCHHHHHHHhhC--CEEEEeCCCch--HHHHHHHHhcC--C--ceEEeeecccccC
Confidence 5554 589999977 6779999999999999976 66644444544 35566655431 1 23322
Q ss_pred ----ccC--CCHHHHHHHhhh-cCce-eeCCCCCCcchhhccccccc--hHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 167 ----DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYT--DDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 167 ----DIH--F~~~~Al~a~~~-~~ki-RINPGNig~~~k~F~~~~Yt--deeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
|=| .+|..|...++. .+++ .+.|-|=. .|. -++|.++|+.+++++...+..++. +. +
T Consensus 90 ~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~~~~---------~y~~N~~~~~~~l~~l~~~~~~~~~~~~~--~~--~ 156 (264)
T cd01020 90 KEGDNPHLWYDPETMSKVANALADALVKADPDNKK---------YYQANAKKFVASLKPLAAKIAELSAKYKG--AP--V 156 (264)
T ss_pred CCCCCCceecCHhHHHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--Ce--E
Confidence 222 245556555554 3332 36787621 122 356999999999999888887643 33 5
Q ss_pred ecCCCCCchhHHHhhCCC---hHHHHH--------HH---HHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 237 GTNHGSLSDRIMSYYGDS---PRGMVE--------SA---FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 237 GvN~GSL~~~il~rygdt---~eamVe--------SA---le~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
=+.|.++ ..+.++||=. +.+.++ |+ .+-.+.+++.+..=|... ..++ ..+++....+++.
T Consensus 157 v~~H~af-~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e-~~~~-~k~~~~l~~la~~ 230 (264)
T cd01020 157 AATEPVF-DYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVN-PQQA-SSATTNITGLAKR 230 (264)
T ss_pred EEeCchH-HHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEEeC-CCCC-cHHHHHHHHHHHH
Confidence 6688887 5678888832 333221 22 445556666666544333 2332 2345555556666
No 403
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=40.42 E-value=74 Score=34.30 Aligned_cols=109 Identities=13% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCceEEEeccC----CCC-CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee---ccCCCH
Q 005248 101 EHPIRVQTMTT----NDT-KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA---DIHFAP 172 (706)
Q Consensus 101 ~~PI~VQSMt~----t~T-~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA---DIHF~~ 172 (706)
--|..+.++.. -.| .+.+..+++.+++++|||+.+=+-.... +..+.|.+. .++|+++ ==+-|.
T Consensus 138 ltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~---~~a~~It~~-----l~iP~iGIGaG~~~dG 209 (263)
T TIGR00222 138 LTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPV---ELAAKITEA-----LAIPVIGIGAGNVCDG 209 (263)
T ss_pred CCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcH---HHHHHHHHh-----CCCCEEeeccCCCCCc
Confidence 34555555531 122 3478999999999999999998876663 555677775 7799983 122333
Q ss_pred HHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC
Q 005248 173 SVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 231 (706)
Q Consensus 173 ~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~ 231 (706)
.+... -+. +=++++. .-+|- +.|..-.+.+.+.+...++..|+..
T Consensus 210 QvlV~-~D~---lG~~~~~----~pkf~------k~y~~~~~~~~~a~~~y~~~V~~g~ 254 (263)
T TIGR00222 210 QILVM-HDA---LGITVGH----IPKFA------KNYLAETETIRAAVRQYMAEVRSGV 254 (263)
T ss_pred eeeeH-Hhh---cCCCCCC----CCCch------HHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 22211 011 1122221 11233 3466667777777777777766543
No 404
>PRK13191 putative peroxiredoxin; Provisional
Probab=40.25 E-value=66 Score=33.00 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH-HHHHhhccCCcCcceeeccC
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACF-EIKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~-~I~~~L~~~g~~iPLVADIH 169 (706)
|..+.+-.+...++.+.||+++-|++.+..+..+.. .+++.+ ..+++.|+++|.+
T Consensus 50 ~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~-~~~i~fPllsD~~ 105 (215)
T PRK13191 50 TTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNL-KVEVPFPIIADPM 105 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhc-CCCCceEEEECCc
Confidence 444555566677788899999999999987765544 455532 2268899999965
No 405
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=40.20 E-value=2.1e+02 Score=32.15 Aligned_cols=117 Identities=16% Similarity=0.274 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 121 VEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~-------~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
+++++.+.++|+++|-+. |+. ..-+.++++++. +++|++++.--+..-+.+++++ ++.+=+-
T Consensus 121 ~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~GGI~~~n~~~~l~aGAdgv~vG---- 190 (430)
T PRK07028 121 VKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAGGLDAETAAKAVAAGADIVIVG---- 190 (430)
T ss_pred HHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhh-----CCCcEEEECCCCHHHHHHHHHcCCCEEEEC----
Confidence 566788889999999765 331 223456666653 6799999976676666666664 5443221
Q ss_pred CcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHH
Q 005248 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (706)
Q Consensus 193 g~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAl 263 (706)
..-|. .+++.+..+++++ .. +...+..|---|=.+++.+++++..-.-+-|--||
T Consensus 191 ---saI~~-----~~d~~~~~~~l~~-------~i-~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~i~d~l 245 (430)
T PRK07028 191 ---GNIIK-----SADVTEAARKIRE-------AI-DSGKPVKIDKFKKSLDEEIREIFMQVSTPNISDAM 245 (430)
T ss_pred ---hHHcC-----CCCHHHHHHHHHH-------HH-hccCCccccccccCCCHHHHHHhcCCCCCcHHhhh
Confidence 11111 1122233332222 22 34788899999999999999999843333444444
No 406
>PRK00208 thiG thiazole synthase; Reviewed
Probab=40.06 E-value=5.2e+02 Score=28.04 Aligned_cols=123 Identities=20% Similarity=0.340 Sum_probs=77.4
Q ss_pred CCCEEEEecCCH------HHHHHHHHHHHhhccCCcC-cceeeccCCCHHHHHHHhhh-cCceeeCC--CCCCcchhhcc
Q 005248 131 GADLVRITVQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIRVNP--GNFADRRAQFE 200 (706)
Q Consensus 131 GceiVRvtv~~~------~~A~al~~I~~~L~~~g~~-iPLVADIHF~~~~Al~a~~~-~~kiRINP--GNig~~~k~F~ 200 (706)
|.+.|-+-|-+. +-.+.++.-+ .|.++|+. +|.++| |+..|...++. ++-| -| -=||.+..
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~-~L~~~Gf~vlpyc~~---d~~~ak~l~~~G~~~v--mPlg~pIGsg~g--- 160 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAE-ILVKEGFVVLPYCTD---DPVLAKRLEEAGCAAV--MPLGAPIGSGLG--- 160 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHH-HHHHCCCEEEEEeCC---CHHHHHHHHHcCCCEe--CCCCcCCCCCCC---
Confidence 779999987542 1233333333 35566887 789988 56777666665 7777 77 66776542
Q ss_pred ccccchHHHHHHHhhHHhhHHHHHHHHHH-cCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 005248 201 QLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (706)
Q Consensus 201 ~~~YtdeeY~~El~~I~~~f~~vv~~ake-~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~ivi 279 (706)
..+.+| ++..++ .++|+=++-.-| || +.+..+-++|.+-+++
T Consensus 161 ---i~~~~~--------------i~~i~e~~~vpVIveaGI~------------tp--------eda~~AmelGAdgVlV 203 (250)
T PRK00208 161 ---LLNPYN--------------LRIIIEQADVPVIVDAGIG------------TP--------SDAAQAMELGADAVLL 203 (250)
T ss_pred ---CCCHHH--------------HHHHHHhcCCeEEEeCCCC------------CH--------HHHHHHHHcCCCEEEE
Confidence 112222 333333 367876664333 34 2444555689988876
Q ss_pred E---EecCChhHHHHHHHHHHHh
Q 005248 280 S---MKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 280 S---~KaSnv~~~i~ayrlla~~ 299 (706)
- .|+.||..|.++|+.-.+.
T Consensus 204 ~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 204 NTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred ChHhhCCCCHHHHHHHHHHHHHH
Confidence 4 5999999999999987665
No 407
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=39.80 E-value=4.6e+02 Score=28.05 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=60.3
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-----HHHHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~-----~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
+|+.+|=.... |.+.+.+.++++.+.|++.+=+++.... ..+.+++|++. +++|++.=.-.++..|.
T Consensus 116 ~~~~~ql~~~~---~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-----~~~pvivK~v~s~~~a~ 187 (299)
T cd02809 116 GPRWFQLYVPR---DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-----WKGPLILKGILTPEDAL 187 (299)
T ss_pred CCeEEEEeecC---CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-----cCCCEEEeecCCHHHHH
Confidence 68888865433 5677778888888999998888765442 13678888885 67898876558889999
Q ss_pred HHhhh-cCceeeC
Q 005248 177 RVAEC-FDKIRVN 188 (706)
Q Consensus 177 ~a~~~-~~kiRIN 188 (706)
.|.++ ++-|-+.
T Consensus 188 ~a~~~G~d~I~v~ 200 (299)
T cd02809 188 RAVDAGADGIVVS 200 (299)
T ss_pred HHHHCCCCEEEEc
Confidence 99987 9999875
No 408
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=39.78 E-value=3.9e+02 Score=28.43 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=56.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCC-CEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHh
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGA-DLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGc-eiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~ 179 (706)
+-||.+|-. ..--.|.++.++|.++|.+..- +=|=|-+|--. +.++.|+. |.+.|+++-+=+ =|...-|+.|+
T Consensus 84 ~G~Vs~ev~-~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~--~Gl~A~~~-L~~~GI~vn~T~--vfs~~Qa~~aa 157 (252)
T cd00439 84 DGRVSVEVS-ARLADDTQGMVEAAKYLSKVVNRRNIYIKIPATA--EGIPAIKD-LIAAGISVNVTL--IFSIAQYEAVA 157 (252)
T ss_pred CCeEEEEEe-ccccCCHHHHHHHHHHHHHhcCcccEEEEeCCCH--HHHHHHHH-HHHCCCceeeee--ecCHHHHHHHH
Confidence 558999974 2223789999999999999875 22445666544 34555553 555677655433 58889999999
Q ss_pred hh-cCceeeCCCCC
Q 005248 180 EC-FDKIRVNPGNF 192 (706)
Q Consensus 180 ~~-~~kiRINPGNi 192 (706)
++ ++=|-..=|=+
T Consensus 158 ~Aga~~ispfvgRi 171 (252)
T cd00439 158 DAGTSVASPFVSRI 171 (252)
T ss_pred HcCCCEEEEeccHH
Confidence 87 55555444433
No 409
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=39.77 E-value=2.1e+02 Score=36.07 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=76.8
Q ss_pred CceeeCCCCCCcchhhccccccch-HHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHH
Q 005248 183 DKIRVNPGNFADRRAQFEQLEYTD-DEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 183 ~kiRINPGNig~~~k~F~~~~Ytd-eeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeS 261 (706)
..+|..+=|-+|.. .||+ ++|++ |+++=.++....+.. ++.|-++++-++..-...++.|+.
T Consensus 446 ~tYR~~GHne~D~p------~yr~p~ey~~----~~~~~dpi~~~~~~L-------i~~G~lt~~e~~~i~~~~~~~v~~ 508 (924)
T PRK09404 446 VCYRRHGHNEGDEP------SFTQPLMYKK----IKKHPTTRELYADKL-------VAEGVITEEEADEMVNEYRDALDA 508 (924)
T ss_pred EEecCCCCCCCCCC------cCCCHHHHHH----HHhcCCHHHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45899888888744 2664 44654 332223333333332 455668887777776667888888
Q ss_pred HHHHHHHHHHCCCCcEEEE-EecCC------hhHHHHHHHHHHHhhhcCCCCCcccccc----------cccCCCCCCch
Q 005248 262 AFEFARICRKLDFHNFLFS-MKASN------PVVMVQAYRLLVAEMYVHGWDYPLHLGV----------TEAGEGEDGRM 324 (706)
Q Consensus 262 Ale~~~i~e~~~f~~iviS-~KaSn------v~~~i~ayrlla~~~~~eg~~YPLHLGV----------TEAG~g~~G~I 324 (706)
|.++++-.....+..-..+ ++.++ +.+-.+.++.+.+++...--+|.+|=-| .+.+...|=.-
T Consensus 509 a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~ 588 (924)
T PRK09404 509 GFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGM 588 (924)
T ss_pred HHHHHHhcCcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHH
Confidence 8888874311111111111 12111 1122344566665542222234443222 13333344445
Q ss_pred hhHHHHHHHhhcCCCceeEEe
Q 005248 325 KSAIGIGTLLQDGLGDTIRVS 345 (706)
Q Consensus 325 KSavGiG~LL~dGIGDTIRVS 345 (706)
.=+.++|+||.+| ++||+|
T Consensus 589 Ae~lA~~s~l~~~--~~v~l~ 607 (924)
T PRK09404 589 AEALAFASLLDEG--YPVRLS 607 (924)
T ss_pred HHHHHHHHHHhCC--CCEEEE
Confidence 6678999999995 778877
No 410
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=39.71 E-value=1.5e+02 Score=32.23 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHcCC--eEEEecC----CCC-CchhHHHh---hCC---------ChHHHHHHHHHHHHHHHHCCCCcEE
Q 005248 218 EVFSPLVEKCKKYGR--AVRIGTN----HGS-LSDRIMSY---YGD---------SPRGMVESAFEFARICRKLDFHNFL 278 (706)
Q Consensus 218 ~~f~~vv~~ake~~~--~IRIGvN----~GS-L~~~il~r---ygd---------t~eamVeSAle~~~i~e~~~f~~iv 278 (706)
+++.++++..++.+- -||||++ .++ +++++++. +|. .+..+-+.+++.++.|.+.|+.-..
T Consensus 153 ~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 153 RRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEE
Confidence 356778888887652 4799984 343 56665553 342 2577789999999999999984322
Q ss_pred --EEEec--CChhHHHHHHHHHHHhhhcCCCC-Ccccccccc
Q 005248 279 --FSMKA--SNPVVMVQAYRLLVAEMYVHGWD-YPLHLGVTE 315 (706)
Q Consensus 279 --iS~Ka--Snv~~~i~ayrlla~~~~~eg~~-YPLHLGVTE 315 (706)
+=+|- .|+..+.+-.+.+. +.|.+ |=||.-.--
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~----~~gv~pyyl~~~~p~ 270 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFV----ECRIKPYYLHHLDLA 270 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHH----hcCCeeEEEEecCCC
Confidence 22332 33444444444443 34553 777775433
No 411
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.42 E-value=1.2e+02 Score=32.10 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=49.8
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
+|+.....|.+.-++.++++.++|++.|+++ .-++ +-.+-++.+++. +++||-.=.|=|.-+|+ +|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~l~~H~Hnd~GlA~aN~laA 213 (275)
T cd07937 139 CYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKE-----VGLPIHLHTHDTSGLAVATYLAA 213 (275)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-----CCCeEEEEecCCCChHHHHHHHH
Confidence 5555566788999999999999999999997 1222 334455555553 45787766666777766 55
Q ss_pred hhh-cCcee
Q 005248 179 AEC-FDKIR 186 (706)
Q Consensus 179 ~~~-~~kiR 186 (706)
+++ ++-|=
T Consensus 214 ~~aGa~~vd 222 (275)
T cd07937 214 AEAGVDIVD 222 (275)
T ss_pred HHhCCCEEE
Confidence 554 55443
No 412
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.35 E-value=1.5e+02 Score=32.45 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcch-hhccccccchHHHHHHHhhHHhh
Q 005248 141 GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR-AQFEQLEYTDDEYQKELQHIEEV 219 (706)
Q Consensus 141 ~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~-k~F~~~~YtdeeY~~El~~I~~~ 219 (706)
+.+..++++++.+.+.+.|. .+++=++...+.+...... ...-+-|.++.... ........| .+|++.|.+.
T Consensus 73 ~d~~i~~~~~l~~~vh~~G~--~i~~QL~h~G~~~~~~~~~-~~~~~~ps~~~~~~~~~~~p~~mt----~~eI~~ii~~ 145 (353)
T cd04735 73 DDSDIPGLRKLAQAIKSKGA--KAILQIFHAGRMANPALVP-GGDVVSPSAIAAFRPGAHTPRELT----HEEIEDIIDA 145 (353)
T ss_pred ChhhhHHHHHHHHHHHhCCC--eEEEEecCCCCCCCccccC-CCceecCCCCcccCCCCCCCccCC----HHHHHHHHHH
Confidence 44556777777777776665 3455544443332111000 01113344332100 001122333 4677889999
Q ss_pred HHHHHHHHHHcCC-eEEEecCCCCCchhHHH--------hhCCChHHHHHHHHHHHHHHHH-CC---CCcEEEEEecCC
Q 005248 220 FSPLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LD---FHNFLFSMKASN 285 (706)
Q Consensus 220 f~~vv~~ake~~~-~IRIGvN~GSL~~~il~--------rygdt~eamVeSAle~~~i~e~-~~---f~~iviS~KaSn 285 (706)
|..=.+.|++.|- .|=|=.-||-|=..+++ +||.+.|.=..=++|-++-.++ .| -.++.|.+|-|-
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 9999999999887 56666667766444444 4775555444444444443333 44 257789999884
No 413
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.08 E-value=2.5e+02 Score=29.11 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcCcceeeccC-CCHHHHH-HHhhh-cCc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIPLVADIH-FAPSVAL-RVAEC-FDK 184 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~-------~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al-~a~~~-~~k 184 (706)
.|...--+|+.+|.++|++.+=+-+-|- --.+.++.||+ .+-++|+-+++| .+|.... .++++ ++-
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~----~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRK----HLPNTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHh----cCCCCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 4556667899999999999998875543 22344555555 344789855555 3354444 33333 444
Q ss_pred eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHH
Q 005248 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (706)
Q Consensus 185 iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle 264 (706)
+=+-.-. + .+.+...++.+|++|+-+=|.+| -+.+.+.+..|=+ ...+...+
T Consensus 92 itvH~ea-~-----------------------~~~~~~~l~~ik~~G~~~gval~-p~t~~e~l~~~l~--~~~vD~Vl- 143 (228)
T PTZ00170 92 FTFHIEA-T-----------------------EDDPKAVARKIREAGMKVGVAIK-PKTPVEVLFPLID--TDLVDMVL- 143 (228)
T ss_pred EEEeccC-C-----------------------chHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHc--cchhhhHH-
Confidence 4332110 0 11256789999999975545555 3345555555521 12222222
Q ss_pred HHHHHHHCCCCcEEEE
Q 005248 265 FARICRKLDFHNFLFS 280 (706)
Q Consensus 265 ~~~i~e~~~f~~iviS 280 (706)
-+..+-||+.-.++
T Consensus 144 --~m~v~pG~~gq~~~ 157 (228)
T PTZ00170 144 --VMTVEPGFGGQSFM 157 (228)
T ss_pred --hhhcccCCCCcEec
Confidence 26667788765443
No 414
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=39.08 E-value=1.9e+02 Score=32.30 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--C-----------------------------------HHHHHHHHHHHHhhcc
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQ--G-----------------------------------KREADACFEIKNSLVQ 157 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~--~-----------------------------------~~~A~al~~I~~~L~~ 157 (706)
.+.+..++++.++.+.|..-+.|-+. + .++.+.+..||+.
T Consensus 126 ~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~--- 202 (404)
T PRK15072 126 RDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK--- 202 (404)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh---
Confidence 36788889999999999999999752 1 1124566677664
Q ss_pred CCcCcceeeccCC--CHHHHHHHhhhcCce
Q 005248 158 KNYNIPLVADIHF--APSVALRVAECFDKI 185 (706)
Q Consensus 158 ~g~~iPLVADIHF--~~~~Al~a~~~~~ki 185 (706)
-|-++.|..|.|. +..-|+..++.++.+
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~ 232 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPY 232 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhcccc
Confidence 3557899999875 455555655656553
No 415
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=38.93 E-value=2.7e+02 Score=31.03 Aligned_cols=121 Identities=22% Similarity=0.229 Sum_probs=67.6
Q ss_pred HHHHhhhcCCCeEEEecCCCCCCCCCcHHHHHHHH----HHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhh
Q 005248 529 EELEILKDIDATMILHDLPFNEDKIGRVQAARRLF----EYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVD 604 (706)
Q Consensus 529 e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r~~~----~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~d 604 (706)
|.+..|.....-.++++ + .+|+...++++ +.+.+.+...|+|+|..+++.|....|+--.+. +.+|=-.
T Consensus 147 eq~~~Li~gG~D~iLiE---T---~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~-~~~l~~~ 219 (311)
T COG0646 147 EQVEGLIDGGADLILIE---T---IFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAF-LNSLEHL 219 (311)
T ss_pred HHHHHHHhCCCcEEEEe---h---hccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHH-HHHhhcc
Confidence 33444666666566655 2 24555555544 334556788999999999998877776643332 2344333
Q ss_pred cCCceEEEeCCCCChhhHhHHHHHHHHHhhcccCCceEecc-CCCCc-------ccccH--HHHHHHHHH
Q 005248 605 GLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSC-PSCGR-------TLFDL--QEISAEIRE 664 (706)
Q Consensus 605 GIGDtIrvslt~~p~~ev~~~a~~ILqa~rlR~~kte~ISC-PsCGR-------TlfDL--q~~~a~Ik~ 664 (706)
| -|.+=+...--| ++.. ..|+.+-. .-.-|||| |.||- ..||+ +++...++.
T Consensus 220 ~-~~~vGlNCa~Gp-~~m~----~~l~~ls~--~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~ 281 (311)
T COG0646 220 G-PDAVGLNCALGP-DEMR----PHLRELSR--IADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAE 281 (311)
T ss_pred C-CcEEeeccccCH-HHHH----HHHHHHHh--ccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHH
Confidence 3 355555554333 3332 33333322 23458999 99984 44664 455555443
No 416
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=38.92 E-value=1.1e+02 Score=35.13 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCC-ChHHHHHHHHHHHHHHHH
Q 005248 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 271 (706)
Q Consensus 220 f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygd-t~eamVeSAle~~~i~e~ 271 (706)
...||+.|+++||-.=|-.+|=.|+..+..+||. ....+|+--.+++++|-+
T Consensus 112 Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~ 164 (477)
T PRK15014 112 YDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFE 164 (477)
T ss_pred HHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999985 667899998899987755
No 417
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=38.71 E-value=2e+02 Score=30.40 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcCccee-eccCCCHHHHHHHhhh-cCceeeCCCCCCcc
Q 005248 121 VEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLV-ADIHFAPSVALRVAEC-FDKIRVNPGNFADR 195 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~---~~A~al~~I~~~L~~~g~~iPLV-ADIHF~~~~Al~a~~~-~~kiRINPGNig~~ 195 (706)
++.....+++|+.-+|+-+... ...+.+..+++. +++|++ =|+=.++.-+.+|.++ +|-|=+.-.....
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-----v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~- 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-----VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDD- 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-----cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCH-
Confidence 5677788899999999965433 346777778774 789988 5766677777777776 8877765544421
Q ss_pred hhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 196 ~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
+.+..+++.|+++|.-+
T Consensus 147 ----------------------~~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 147 ----------------------EQLKELLDYAHSLGLDV 163 (260)
T ss_pred ----------------------HHHHHHHHHHHHcCCeE
Confidence 25566777777776544
No 418
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.68 E-value=1.3e+02 Score=30.53 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCceEEEeccCCC-CCCHHHHHHHHHHHHHcCCCEEEEe----cCCHHH-HHHHHHHHHhhccCCcCcceeeccCCCHHH
Q 005248 101 EHPIRVQTMTTND-TKDVAGTVEEVMRIADQGADLVRIT----VQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSV 174 (706)
Q Consensus 101 ~~PI~VQSMt~t~-T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~~~-A~al~~I~~~L~~~g~~iPLVADIHF~~~~ 174 (706)
+-++.+.-|+.+. ..+.+.-.+.++++.++|++.|++. +-++++ .+-+..+++. --++||-.=.|=|.-+
T Consensus 128 G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~----~~~~~~~~H~Hn~~gl 203 (265)
T cd03174 128 GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA----LPDVPLGLHTHNTLGL 203 (265)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh----CCCCeEEEEeCCCCCh
Confidence 3577888776665 4688888899999999999999986 223333 3444455543 3338888877878888
Q ss_pred HH
Q 005248 175 AL 176 (706)
Q Consensus 175 Al 176 (706)
|+
T Consensus 204 a~ 205 (265)
T cd03174 204 AV 205 (265)
T ss_pred HH
Confidence 77
No 419
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.62 E-value=60 Score=29.31 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCch-hH---HHhhC-C-ChHHHHHHHHHHHHHHHHCCC
Q 005248 220 FSPLVEKCKKYGRAVRIGTNHGSLSD-RI---MSYYG-D-SPRGMVESAFEFARICRKLDF 274 (706)
Q Consensus 220 f~~vv~~ake~~~~IRIGvN~GSL~~-~i---l~ryg-d-t~eamVeSAle~~~i~e~~~f 274 (706)
-.+.++..+++|+++++=+|.+|.+. .+ |++.| + +++.++-|+.--++.+.+..+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 46789999999999999999999983 33 34556 3 667888888888888877533
No 420
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=38.58 E-value=2.5e+02 Score=30.52 Aligned_cols=152 Identities=18% Similarity=0.304 Sum_probs=97.3
Q ss_pred HHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhh---------h-cCceeeCCCCCCc
Q 005248 125 MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE---------C-FDKIRVNPGNFAD 194 (706)
Q Consensus 125 ~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~---------~-~~kiRINPGNig~ 194 (706)
+.|.++||||+ +|.++++--+.++++.+. .|.++=+=.|..++-.+.-...+ . |+.|=.-|.+--+
T Consensus 26 k~l~~~GAeL~-fTy~~e~l~krv~~la~~---~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~ 101 (259)
T COG0623 26 KALAEQGAELA-FTYQGERLEKRVEELAEE---LGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELK 101 (259)
T ss_pred HHHHHcCCEEE-EEeccHHHHHHHHHHHhh---ccCCeEEecCCCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhC
Confidence 56899999997 888888766666666664 44566666788888776553222 1 4455566766544
Q ss_pred chhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC-------chhHHHhhC--CChHHHHHHHHHH
Q 005248 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL-------SDRIMSYYG--DSPRGMVESAFEF 265 (706)
Q Consensus 195 ~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL-------~~~il~ryg--dt~eamVeSAle~ 265 (706)
++ |-+ -|.|.|..-++---=-|..|.+.|+.. =.|.||+ +.|.+-.|. .-++|-.||..++
T Consensus 102 G~--~~d--tsre~f~~a~~IS~YS~~~lak~a~~l------M~~ggSiltLtYlgs~r~vPnYNvMGvAKAaLEasvRy 171 (259)
T COG0623 102 GD--YLD--TSREGFLIAMDISAYSFTALAKAARPL------MNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRY 171 (259)
T ss_pred Cc--ccc--cCHHHHHhHhhhhHhhHHHHHHHHHHh------cCCCCcEEEEEeccceeecCCCchhHHHHHHHHHHHHH
Confidence 33 333 234557766665555666676666642 3567777 556666664 2334445555555
Q ss_pred HHHHHHCCCCcEEEEEecCChhHHHHH
Q 005248 266 ARICRKLDFHNFLFSMKASNPVVMVQA 292 (706)
Q Consensus 266 ~~i~e~~~f~~iviS~KaSnv~~~i~a 292 (706)
++.++|=++|-+-.=|..|-.+..+
T Consensus 172 --LA~dlG~~gIRVNaISAGPIrTLAa 196 (259)
T COG0623 172 --LAADLGKEGIRVNAISAGPIRTLAA 196 (259)
T ss_pred --HHHHhCccCeEEeeecccchHHHHh
Confidence 4578888999988877777766554
No 421
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.58 E-value=2.8e+02 Score=31.14 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCE-EEEecCCH--HHHHHH--------------HHHHHhhccCC----cCcceeeccCCCHHHHHHH
Q 005248 120 TVEEVMRIADQGADL-VRITVQGK--READAC--------------FEIKNSLVQKN----YNIPLVADIHFAPSVALRV 178 (706)
Q Consensus 120 tv~Qi~~L~~aGcei-VRvtv~~~--~~A~al--------------~~I~~~L~~~g----~~iPLVADIHF~~~~Al~a 178 (706)
.+..|.+|+++|-++ +.|+..+. +.-+.+ ..|++.+.+.| +..|||.++--+..-|..-
T Consensus 220 l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L 299 (368)
T PRK14456 220 ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKL 299 (368)
T ss_pred ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHH
Confidence 457899999999874 77775542 222222 22333333444 4579999988876444444
Q ss_pred hhhc----CceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC
Q 005248 179 AECF----DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 179 ~~~~----~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS 242 (706)
++++ -+|++=|=|--...+ |..-. ++++.++.+..+++|+++.|.-..|.
T Consensus 300 ~~~l~~~~~~VnlIpyn~~~~~~-~~~ps-------------~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 300 IRFASRFFCKINLIDYNSIVNIK-FEPVC-------------SSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHHhcCCCeeEEeeeccCCCCC-CCCCC-------------HHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 4432 355544444322221 43221 33455567777889999999988776
No 422
>PRK00865 glutamate racemase; Provisional
Probab=38.43 E-value=75 Score=33.33 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH 169 (706)
+-+.+-+..|.++||+.+=|++++.-.. ++..+++. +++|+|. +.
T Consensus 54 ~~~~~~~~~L~~~g~d~iVIaCNTa~~~-~l~~lr~~-----~~iPvig-i~ 98 (261)
T PRK00865 54 ERTLEIVEFLLEYGVKMLVIACNTASAV-ALPDLRER-----YDIPVVG-IV 98 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCchHHHH-HHHHHHHh-----CCCCEEe-eH
Confidence 3445566889999999999999997543 67778875 7899998 75
No 423
>PRK10200 putative racemase; Provisional
Probab=38.30 E-value=65 Score=33.34 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
.+.-++.++.|.++||+.+=+++++.-.. +..++++ +++|++.
T Consensus 61 ~~~l~~~~~~L~~~g~~~iviaCNTah~~--~~~l~~~-----~~iPii~ 103 (230)
T PRK10200 61 GDILAEAALGLQRAGAEGIVLCTNTMHKV--ADAIESR-----CSLPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCchHHHH--HHHHHHh-----CCCCEee
Confidence 35667788999999999999999998877 5888874 7899863
No 424
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=37.86 E-value=1.5e+02 Score=32.42 Aligned_cols=87 Identities=11% Similarity=0.201 Sum_probs=62.9
Q ss_pred ecCCCCceEEEeccCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcCcceeeccCCC
Q 005248 97 AIGSEHPIRVQTMTTNDT--KDVAGTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFA 171 (706)
Q Consensus 97 ~IGG~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aGceiVRvtv~~~---~~A~al~~I~~~L~~~g~~iPLVADIHF~ 171 (706)
.+||.....|+.=++.-- ...+...+....+.+.|..-+.+-+-.. ++.+.+..||+. -|.++.|..|.|=-
T Consensus 122 LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~---~g~~~~l~iDan~~ 198 (372)
T COG4948 122 LLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREA---VGDDVRLMVDANGG 198 (372)
T ss_pred HcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHH---hCCCceEEEeCCCC
Confidence 367776677776666553 2445555666666669999999987666 888999999985 46779999999966
Q ss_pred HHH--HHHHhhhcCcee
Q 005248 172 PSV--ALRVAECFDKIR 186 (706)
Q Consensus 172 ~~~--Al~a~~~~~kiR 186 (706)
+.+ |+..++.+++..
T Consensus 199 ~~~~~A~~~~~~l~~~~ 215 (372)
T COG4948 199 WTLEEAIRLARALEEYG 215 (372)
T ss_pred cCHHHHHHHHHHhcccC
Confidence 555 666666666554
No 425
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=37.75 E-value=5.6e+02 Score=30.62 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcCcceee---------ccCCCHHH-
Q 005248 115 KDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVA---------DIHFAPSV- 174 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvt----------v~~~~~A~al~~I~~~L~~~g~~iPLVA---------DIHF~~~~- 174 (706)
..++.-+.=+..|.++|...+=+. .-+++.-+.|+.+++.+ -++++.+ =-|+.-++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~----~~~~l~~l~Rg~N~~gy~~ypd~vv 98 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKAL----PNTPLQMLLRGQNLVGYRHYPDDVV 98 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhC----CCCEEEEEeccccccccccccchhh
Confidence 445666677788999999998886 13556778888888752 2355443 33333222
Q ss_pred ---HHHHhhh-cCceeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHH
Q 005248 175 ---ALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (706)
Q Consensus 175 ---Al~a~~~-~~kiRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ 249 (706)
...|+++ ++.+||- |-|= + +++.+.++.+|++|.-+...+-. +.++
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd--------------------~----~n~~~~i~~ak~~G~~v~~~i~~-t~~p---- 149 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALND--------------------V----RNMEVAIKAAKKAGAHVQGTISY-TTSP---- 149 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecCh--------------------H----HHHHHHHHHHHHcCCEEEEEEEe-ccCC----
Confidence 3355565 8888872 1111 0 26677899999999988855411 1111
Q ss_pred hhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccc
Q 005248 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (706)
Q Consensus 250 rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHL 311 (706)
+ .++ +--++.++-+++.|-+ .|++|-++=..+=+..+.|.+.+.++ ++-|+|+
T Consensus 150 ~--~t~----~~~~~~a~~l~~~Gad--~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~~pi~~ 202 (592)
T PRK09282 150 V--HTI----EKYVELAKELEEMGCD--SICIKDMAGLLTPYAAYELVKALKEE-VDLPVQL 202 (592)
T ss_pred C--CCH----HHHHHHHHHHHHcCCC--EEEECCcCCCcCHHHHHHHHHHHHHh-CCCeEEE
Confidence 1 244 3445566667788987 56788776544444334444443222 3456554
No 426
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=37.70 E-value=1.1e+02 Score=28.04 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHc--CCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 005248 219 VFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (706)
Q Consensus 219 ~f~~vv~~ake~--~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~ 288 (706)
.+.++++.+++. +..++|-+|...++++ .++.+.+.|+..+.+|+.+.+...
T Consensus 60 ~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~------------------~~~~l~~~g~~~i~i~le~~~~~~ 113 (204)
T cd01335 60 ELAELLRRLKKELPGFEISIETNGTLLTEE------------------LLKELKELGLDGVGVSLDSGDEEV 113 (204)
T ss_pred hHHHHHHHHHhhCCCceEEEEcCcccCCHH------------------HHHHHHhCCCceEEEEcccCCHHH
Confidence 466778888887 9999999998887554 344455669999999999999763
No 427
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.62 E-value=1e+02 Score=32.73 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=81.1
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhcc-----CCcCcce--ee--
Q 005248 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ-----KNYNIPL--VA-- 166 (706)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~-----~g~~iPL--VA-- 166 (706)
|||+. +.|+|+. ++|..+.+.+.+++++|.+| +++=..=.+.+ .-+..+.+.+.. ..-.+++ ..
T Consensus 20 I~Gd~-v~V~~li~~g~dpH~ye~~p~d~~~l~~A--dliv~~G~~le--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 94 (286)
T cd01019 20 IMGGV-GEVEVLVPPGASPHDYELRPSDARKLQEA--DLVVWIGPDLE--AFLDKVLQGRKKGKVLTLAKLIDLKTLEDG 94 (286)
T ss_pred HcCCC-cceEEecCCCCCccCCCCCHHHHHHHHhC--CEEEEeCCCch--HHHHHHHHhcCcCceEecccCCcccccccc
Confidence 66764 6777875 46789999999999999985 66544434443 244444443210 0001122 10
Q ss_pred -------------------------c--cCCCHHHHHHHhhh-cCc-eeeCCCCCCcchhhccccccchHHHHHHHhhHH
Q 005248 167 -------------------------D--IHFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (706)
Q Consensus 167 -------------------------D--IHF~~~~Al~a~~~-~~k-iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~ 217 (706)
| +-++|..+...++. .++ .++.|.|=.. |..- -++|.++|+.++
T Consensus 95 ~~~~~~~h~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~~dP~~~~~----y~~N---~~~~~~~L~~l~ 167 (286)
T cd01019 95 ASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAAT----YAAN---LEAFNARLAELD 167 (286)
T ss_pred cccccccccccccccccCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHCchhHHH----HHHH---HHHHHHHHHHHH
Confidence 1 01455666666665 444 3578887311 1111 356899999999
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhC
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ryg 252 (706)
++.+..+..++. +. +=+-|.++. .+.++||
T Consensus 168 ~~~~~~~~~~~~--~~--~v~~H~af~-Yl~~~~g 197 (286)
T cd01019 168 ATIKERLAPVKT--KP--FFVFHDAYG-YFEKRYG 197 (286)
T ss_pred HHHHHHhhccCC--Ce--EEEecccHH-HHHHHcC
Confidence 888887776543 33 345677774 5667776
No 428
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=37.55 E-value=18 Score=31.30 Aligned_cols=18 Identities=50% Similarity=0.763 Sum_probs=14.5
Q ss_pred cCCceEeccCCCCccccc
Q 005248 637 NTKTEYVSCPSCGRTLFD 654 (706)
Q Consensus 637 ~~kte~ISCPsCGRTlfD 654 (706)
+.+.-.++|+.||-|+|=
T Consensus 31 ~~~f~~v~C~~CGYTE~Y 48 (64)
T PF09855_consen 31 NKKFTTVSCTNCGYTEFY 48 (64)
T ss_pred CcEEEEEECCCCCCEEEE
Confidence 345678999999999874
No 429
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.53 E-value=1.7e+02 Score=29.17 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=59.8
Q ss_pred ccCCcCcceeeccCCC-HH----HHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH
Q 005248 156 VQKNYNIPLVADIHFA-PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (706)
Q Consensus 156 ~~~g~~iPLVADIHF~-~~----~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake 229 (706)
.....+.|+++=|+-+ +. .|..+.++ +|.|=||=|. +... -++.+|=.-+++=-+.+.++++..++
T Consensus 49 ~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~---p~~~-----~~~~~~G~~l~~~~~~~~eii~~v~~ 120 (231)
T cd02801 49 TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGC---PSPK-----VTKGGAGAALLKDPELVAEIVRAVRE 120 (231)
T ss_pred ccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCC---CHHH-----HhCCCeeehhcCCHHHHHHHHHHHHH
Confidence 3345679999998754 54 44455553 8889998553 1110 01112222222212233344444443
Q ss_pred -cCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 005248 230 -YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 230 -~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS 280 (706)
-++|+++.+|.|.- .+ +.+.++++.+++.|.+-|.++
T Consensus 121 ~~~~~v~vk~r~~~~-----------~~---~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 121 AVPIPVTVKIRLGWD-----------DE---EETLELAKALEDAGASALTVH 158 (231)
T ss_pred hcCCCEEEEEeeccC-----------Cc---hHHHHHHHHHHHhCCCEEEEC
Confidence 23788888876532 11 678899999999999888774
No 430
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.37 E-value=1.6e+02 Score=32.91 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=59.3
Q ss_pred HHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcCccee----eccCCCHHHHHHHhhhcCceee--CCC
Q 005248 127 IADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLV----ADIHFAPSVALRVAECFDKIRV--NPG 190 (706)
Q Consensus 127 L~~aGceiVRvt----------v~~~~~A~al~~I~~~L~~~g~~iPLV----ADIHF~~~~Al~a~~~~~kiRI--NPG 190 (706)
..+-|+|+|-|- .|-.++|+-+.++-+. +++|+| +|=.=||.+..+|||.++.=|+ ---
T Consensus 160 Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA-----VdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 160 VKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA-----VDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh-----cCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 467899999886 4556778888888774 899998 4667778899999999888775 333
Q ss_pred CCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 191 Nig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
|. +--++.++++|++||-.+
T Consensus 235 nl------------------------dlDy~~ia~AA~ky~H~V 254 (403)
T COG2069 235 NL------------------------DLDYERIAEAALKYDHVV 254 (403)
T ss_pred cc------------------------ccCHHHHHHHHHhcCceE
Confidence 43 114577999999997654
No 431
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=37.34 E-value=5.2e+02 Score=27.88 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=56.6
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcc-eeeccC-CCHHHHHHHhhhcCceeeCCCCCCcchhhccc
Q 005248 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIH-FAPSVALRVAECFDKIRVNPGNFADRRAQFEQ 201 (706)
Q Consensus 124 i~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iP-LVADIH-F~~~~Al~a~~~~~kiRINPGNig~~~k~F~~ 201 (706)
++.|.++|| .+.|-+..|++.+.+ .|++-+ ++-.-. +++.-...|++. .+ ++=|+.+
T Consensus 41 ~~~l~~~G~---g~~vaS~~E~~~~~~-------~G~~~~~i~~~~~~k~~~~l~~a~~~--gi--~~~~~ds------- 99 (362)
T cd00622 41 LRTLAALGA---GFDCASKGEIELVLG-------LGVSPERIIFANPCKSISDIRYAAEL--GV--RLFTFDS------- 99 (362)
T ss_pred HHHHHHcCC---CeEecCHHHHHHHHH-------cCCCcceEEEcCCCCCHHHHHHHHHc--CC--CEEEECC-------
Confidence 344567787 788888888876643 355432 333222 233333344332 12 1112322
Q ss_pred cccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCC
Q 005248 202 LEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (706)
Q Consensus 202 ~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f 274 (706)
.+|++++. +.+++..+.+||-++.|.=.....+|+|-+++ .+.+.++.+.+.+.
T Consensus 100 --------~~el~~l~-------~~~~~~~v~vri~~~~~~~~~~~~sRfGi~~~----~~~~~~~~~~~~~~ 153 (362)
T cd00622 100 --------EDELEKIA-------KHAPGAKLLLRIATDDSGALCPLSRKFGADPE----EARELLRRAKELGL 153 (362)
T ss_pred --------HHHHHHHH-------HHCCCCEEEEEEeeCCCCCCCcccCCCCCCHH----HHHHHHHHHHHcCC
Confidence 12333333 34445667788877655322223478996664 35556666665443
No 432
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=37.31 E-value=6e+02 Score=28.16 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCceEEEeccCCCC--CCHHHHHHHHHHHHHcC----CCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeecc------
Q 005248 101 EHPIRVQTMTTNDT--KDVAGTVEEVMRIADQG----ADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI------ 168 (706)
Q Consensus 101 ~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aG----ceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADI------ 168 (706)
..||.+-.||-..+ .++...+.+ ...++| .--.|...-+.+-++.+..+|+. .-+.|++|-+
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~--~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~----~p~~p~~aNl~~~~~~ 133 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAE--AAEELGIAMGVGSQRAALKDPELADSFSVVRKV----APDGLLFANLGAVQLY 133 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHH--HHHHcCCCeEecccHhhccChhhHHHHHHHHHH----CCCceEEeecCccccC
Confidence 68999999997643 222222222 233455 11237767777778888888884 2368888843
Q ss_pred CCCHHHHHHHhhh--cCceeeCC
Q 005248 169 HFAPSVALRVAEC--FDKIRVNP 189 (706)
Q Consensus 169 HF~~~~Al~a~~~--~~kiRINP 189 (706)
.+++..+..+++. .+.+-||-
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l 156 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHL 156 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeC
Confidence 4556666666663 55555554
No 433
>PRK01362 putative translaldolase; Provisional
Probab=37.23 E-value=69 Score=33.26 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-----CHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 119 GTVEEVMRIADQGADLVRITVQ-----GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~-----~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
-|+.|....++|||++|-.=+. +..-.+.+++|.+-+++.|+++-++|=--=|++-.++++.. ++-+=|.|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 110 FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred cCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 4689999999999999955544 44566788899988888898888887777788888888775 99999998776
Q ss_pred CcchhhccccccchH
Q 005248 193 ADRRAQFEQLEYTDD 207 (706)
Q Consensus 193 g~~~k~F~~~~Ytde 207 (706)
-. +-...||++
T Consensus 190 ~~----l~~~p~t~~ 200 (214)
T PRK01362 190 KQ----LFKHPLTDK 200 (214)
T ss_pred HH----HHcCCchHH
Confidence 22 334555654
No 434
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.98 E-value=1.7e+02 Score=31.62 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcCcceee---ccCCCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHh---------------hH
Q 005248 159 NYNIPLVA---DIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE---------------VF 220 (706)
Q Consensus 159 g~~iPLVA---DIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~---------------~f 220 (706)
|+..|+|. ..=.++++|.++.++ |-+|. +--..++-++..+|++++++ .+
T Consensus 9 gi~~Pii~apM~~~s~~~la~avs~a--------GglG~----l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~ 76 (307)
T TIGR03151 9 GIEYPIFQGGMAWVATGSLAAAVSNA--------GGLGI----IGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFV 76 (307)
T ss_pred CCCCCEEcCCCCCCCCHHHHHHHHhC--------CCcce----eccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCH
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCch--hHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 005248 221 SPLVEKCKKYGRAVRIGTNHGSLSD--RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (706)
Q Consensus 221 ~~vv~~ake~~~~IRIGvN~GSL~~--~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS 280 (706)
.+.++.+.+++.++ |-+..|.-++ +.+...|-.--+.| +.+++++.+++.|.+-|++.
T Consensus 77 ~~~~~~~~~~~v~~-v~~~~g~p~~~i~~lk~~g~~v~~~v-~s~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 77 DELVDLVIEEKVPV-VTTGAGNPGKYIPRLKENGVKVIPVV-ASVALAKRMEKAGADAVIAE 136 (307)
T ss_pred HHHHHHHHhCCCCE-EEEcCCCcHHHHHHHHHcCCEEEEEc-CCHHHHHHHHHcCCCEEEEE
No 435
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=36.97 E-value=15 Score=32.32 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=11.6
Q ss_pred ceEeccCCCCcccc
Q 005248 640 TEYVSCPSCGRTLF 653 (706)
Q Consensus 640 te~ISCPsCGRTlf 653 (706)
.-.|.|++||+||.
T Consensus 36 st~V~C~~CG~~l~ 49 (67)
T COG2051 36 STVVTCLICGTTLA 49 (67)
T ss_pred ceEEEecccccEEE
Confidence 45789999999975
No 436
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=36.93 E-value=1.9e+02 Score=32.63 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHcCCeEE-EecCCCCCchhHHHhhCC----Ch---HHHHHHHHHHHHHHHHCCCCcEEEE----EecCC
Q 005248 218 EVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGD----SP---RGMVESAFEFARICRKLDFHNFLFS----MKASN 285 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IR-IGvN~GSL~~~il~rygd----t~---eamVeSAle~~~i~e~~~f~~iviS----~KaSn 285 (706)
+.+.++.+.++++|+.+- |+.|. .++. .-++|. .+ +.=++-..+.+++++++|=..|.+= .|.+-
T Consensus 69 ~d~~~~~~~l~~~GL~v~~i~p~~--f~~~-~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g 145 (378)
T TIGR02635 69 EDYEELARYAEELGLKIGAINPNL--FQDD-DYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPG 145 (378)
T ss_pred cCHHHHHHHHHHcCCceeeeeCCc--cCCc-ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCc
Confidence 357889999999999886 66653 3221 113441 12 2445666777888899998855333 44433
Q ss_pred h-------hHHHHHHHHHHHhhhcCCCCCcccccccccCCC---CCC---c-hhhHHHHHHHhhcCCCceeEEec
Q 005248 286 P-------VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG---EDG---R-MKSAIGIGTLLQDGLGDTIRVSL 346 (706)
Q Consensus 286 v-------~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g---~~G---~-IKSavGiG~LL~dGIGDTIRVSL 346 (706)
. ..++++.+.+++. .-+ |+.=+=+. +.. + + ..+|.+.++.+-+|+.+.|-|
T Consensus 146 ~~~~~~a~~rl~esL~eI~~~--------~~~-~v~~~iE~Kp~Ep~~y~t~~-~~~~~~l~l~~~lg~~~~v~l 210 (378)
T TIGR02635 146 QDDFRSRKDRLEESLAEVYEH--------LGA-DMRLLIEYKFFEPAFYHTDI-PDWGTAYALSEKLGERALVLV 210 (378)
T ss_pred ccCHHHHHHHHHHHHHHHHHh--------CcC-CCEEEEecCCCCCceeeecC-CcHHHHHHHHHhhCCCceEEe
Confidence 2 3345555555533 111 33222110 111 1 3 667889999988888876665
No 437
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.62 E-value=1.8e+02 Score=30.57 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 112 NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvtv--~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
..|-+.+.-...+.++.+.|+||+.++| .+.+++..|-++..+.++. .+.|+|+
T Consensus 136 ~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~-~~~p~i~ 191 (238)
T PRK13575 136 ESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDT-MDCKVVG 191 (238)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhc-cCCCEEE
Confidence 4455666667788899999999999998 5666666665554433332 4566653
No 438
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=36.62 E-value=3.2e+02 Score=29.70 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cC--CHH-HHHHHHHHHHh
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRIT---VQ--GKR-EADACFEIKNS 154 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvt---v~--~~~-~A~al~~I~~~ 154 (706)
...+.+.-+++++.+.+.|+.-|.++ -| +.+ -.+.+..|++.
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEE 115 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999998 22 222 25566666654
No 439
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=36.51 E-value=1.1e+02 Score=32.53 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceee
Q 005248 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV 187 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRI 187 (706)
|.+|..+..++|+|+|.+---+. +.++++.+.+++. -++|++|.---++.-+.+.++. +|-|=+
T Consensus 190 t~eea~~A~~~gaD~I~ld~~~~---e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 190 TLEEAEEALEAGADIIMLDNMSP---EELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 47888888899999999966655 4444455544443 5799999988887666655554 666644
No 440
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.43 E-value=2.2e+02 Score=28.61 Aligned_cols=138 Identities=15% Similarity=0.237 Sum_probs=84.4
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhc----cCCcCccee------
Q 005248 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLV----QKNYNIPLV------ 165 (706)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~----~~g~~iPLV------ 165 (706)
|||+ -+.|+||. +.|..+.+-|-.|++.|.+| |++=..=.+.+ .-+.++.+.+. ..|+..-..
T Consensus 19 I~gd-~~~V~~l~p~g~dpH~ye~tp~d~~~l~~A--dliv~~G~~~E--~~~~k~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (203)
T cd01145 19 VAGD-AVIVSALTPPGVDPHQYQLKPSDIAKMRKA--DLVVTSGHELE--GFEPKLAELSSNSKVQPGIKILIEDSDTVG 93 (203)
T ss_pred HcCC-cEEEEEecCCCCCcccccCCHHHHHHHhcC--CEEEEcCCCHH--HHHHHHHHhccccccCCCcccccccccccc
Confidence 4544 57899985 46789999999999999954 77644445554 34556665431 122221111
Q ss_pred ------------eccC--CCHHHHHHHhhh-cCc-eeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHH
Q 005248 166 ------------ADIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (706)
Q Consensus 166 ------------ADIH--F~~~~Al~a~~~-~~k-iRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake 229 (706)
.|=| ++|..+...++. .++ .+++|-|=.. |+. .-++|.++|+.++++++..++.++.
T Consensus 94 ~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~l~~l~~~~~~~l~~~~~ 166 (203)
T cd01145 94 MVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEE----YKE---NLRVFLAKLNKLLREWERQFEGLKG 166 (203)
T ss_pred cccccccccCCCCCcCeecCHHHHHHHHHHHHHHHHHhCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 0211 345666655553 222 3578877311 111 1356999999999999888887653
Q ss_pred cCCeEEEecCCCCCchhHHHhhC
Q 005248 230 YGRAVRIGTNHGSLSDRIMSYYG 252 (706)
Q Consensus 230 ~~~~IRIGvN~GSL~~~il~ryg 252 (706)
+ .+=+.|.++ ..+.++||
T Consensus 167 ~----~~v~~H~af-~Y~~~~yG 184 (203)
T cd01145 167 I----QVVAYHPSY-QYLADWLG 184 (203)
T ss_pred C----eEEEecccH-HHHHHHcC
Confidence 2 256788887 45677776
No 441
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=36.36 E-value=58 Score=39.83 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=62.2
Q ss_pred CCceEEEeCCCCChhhHhHHHHHHHH-------HhhcccCCceEeccCC---CCcccccHHHHHHHHHHHhCCCC---CC
Q 005248 606 LGDGLLLEAPGQDFDFLRDTSFNLLQ-------GCRMRNTKTEYVSCPS---CGRTLFDLQEISAEIREKTSHLP---GV 672 (706)
Q Consensus 606 IGDtIrvslt~~p~~ev~~~a~~ILq-------a~rlR~~kte~ISCPs---CGRTlfDLq~~~a~Ik~~t~hLk---gl 672 (706)
++-+=||.+.+.+.+.+. ..+..|- +.++|+ +-+||+ |..-.=|-..+-.+++++...|+ ++
T Consensus 586 ~Tg~Qri~l~G~k~edLp-~~w~~l~~~sg~ay~k~lrt----vK~Cvg~~~Cr~g~qds~~Lgi~le~~~~gl~~P~k~ 660 (793)
T COG1251 586 ITGGQRIDLLGVKKEDLP-AIWADLGMASGHAYGKALRT----VKTCVGSTFCRFGTQDSVGLGIRLEKRYEGLRTPHKV 660 (793)
T ss_pred ccCCceeeecCCCcccch-hHHHhccccchhHHHHhhhh----HhhCCCcchhhhCccchhhHhHHHHHHhccCCCCcce
Confidence 334456777777777763 3343331 223333 447996 88877788889999999998875 89
Q ss_pred eEEEEcccccCccccccCceeeeccCCCc
Q 005248 673 SIAIMGCIVNGPGEMADADFGYVGGAPGK 701 (706)
Q Consensus 673 kIAIMGCIVNGPGEmadAD~GyvG~~~gk 701 (706)
|+||-||--| =+|+.==|+|+.|...|-
T Consensus 661 k~~vSgCpr~-CaEa~~KDvGii~t~~G~ 688 (793)
T COG1251 661 KMAVSGCPRN-CAEAGIKDVGIIGTEKGW 688 (793)
T ss_pred eEeeccCCcc-cccccCcceEEEecccCc
Confidence 9999999544 456666689999875553
No 442
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=36.04 E-value=1.7e+02 Score=32.24 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEE----EecCChhHHHHHHHHHHH
Q 005248 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS----MKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 223 vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS----~KaSnv~~~i~ayrlla~ 298 (706)
.++..|+.|+. ||-+--=|.++++++.+|-.. =++.+.+.++.|.+.||.+|-+. +.--+...+.+..+.+.+
T Consensus 105 ~l~~lk~~G~n-risiGvQS~~d~vL~~l~R~~--~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~ 181 (353)
T PRK05904 105 QINLLKKNKVN-RISLGVQSMNNNILKQLNRTH--TIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILK 181 (353)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 46777778853 555555677899999998421 24567778888899999755544 444555555555555443
No 443
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.02 E-value=76 Score=34.33 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCC------CchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHH
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGS------LSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 291 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GS------L~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ 291 (706)
..+.+||+.||++|+.|=+=+||-- |++. | -+.++.++++|..-|+|--=.++-|.||+
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~-----------~----~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~ 137 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ-----------L----DEAFKLYAKWGVKGVKIDFMDRDDQEMVN 137 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC-----------H----HHHHHHHHHCTEEEEEEE--SSTSHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH-----------H----HHHHHHHHHcCCCEEeeCcCCCCCHHHHH
Confidence 4678899999999999999888766 4332 2 34678899999999999888999999999
Q ss_pred HHHHHHHhh
Q 005248 292 AYRLLVAEM 300 (706)
Q Consensus 292 ayrlla~~~ 300 (706)
-|+.+++..
T Consensus 138 ~y~~i~~~A 146 (273)
T PF10566_consen 138 WYEDILEDA 146 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999884
No 444
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=35.98 E-value=1e+02 Score=36.50 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=52.6
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCC----HHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH----HH
Q 005248 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQG----KREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (706)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt-v~~----~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a 178 (706)
|+|..+-.|.+.-++-++++.++||+.|.|. +.+ .+..+-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 144 ~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~-----~~~pi~~H~Hnt~Gla~An~laA 218 (592)
T PRK09282 144 SYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEE-----VDLPVQLHSHCTSGLAPMTYLKA 218 (592)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHh-----CCCeEEEEEcCCCCcHHHHHHHH
Confidence 4544444678999999999999999998886 222 2344455555554 56898888888877776 56
Q ss_pred hhh-cCcee--eCC
Q 005248 179 AEC-FDKIR--VNP 189 (706)
Q Consensus 179 ~~~-~~kiR--INP 189 (706)
+++ ++-|= +||
T Consensus 219 v~aGad~vD~ai~g 232 (592)
T PRK09282 219 VEAGVDIIDTAISP 232 (592)
T ss_pred HHhCCCEEEeeccc
Confidence 665 55443 554
No 445
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=35.87 E-value=5.2e+02 Score=27.16 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=67.4
Q ss_pred CcceeeccCCCHHHHHHHhhh-----cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 161 NIPLVADIHFAPSVALRVAEC-----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 161 ~iPLVADIHF~~~~Al~a~~~-----~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+|.=+|--.|......-+++ ++.+=+ .|+-|... ..|++|+.+= ++.+++.++ .++|+=
T Consensus 10 ~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~-~GstGE~~------~Lt~~Er~~l-------~~~~~~~~~-~~~~vi 74 (289)
T PF00701_consen 10 ITPFNADGSIDEDALKRLIDFLIEAGVDGLVV-LGSTGEFY------SLTDEERKEL-------LEIVVEAAA-GRVPVI 74 (289)
T ss_dssp ---BETTSSB-HHHHHHHHHHHHHTTSSEEEE-SSTTTTGG------GS-HHHHHHH-------HHHHHHHHT-TSSEEE
T ss_pred eCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEE-CCCCcccc------cCCHHHHHHH-------HHHHHHHcc-CceEEE
Confidence 356667777776555544442 555444 46665422 3456655332 223444444 468999
Q ss_pred EecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEec---CChhHHHHHHHHHHHh
Q 005248 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA---SNPVVMVQAYRLLVAE 299 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~Ka---Snv~~~i~ayrlla~~ 299 (706)
.||.+-|. +.++++++.+++.|++-+.+..=. -+...+++-|+.+++.
T Consensus 75 ~gv~~~st----------------~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 75 AGVGANST----------------EEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA 125 (289)
T ss_dssp EEEESSSH----------------HHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred ecCcchhH----------------HHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh
Confidence 99987774 457899999999999999887532 3467899999999987
No 446
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=35.80 E-value=6.1e+02 Score=27.57 Aligned_cols=40 Identities=33% Similarity=0.312 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeec
Q 005248 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD 167 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVAD 167 (706)
.+.+=++.+.++|+. +++|-+..||+.+.+ .|++-++++-
T Consensus 42 ~~~~i~~~~~~~G~~--~~~vas~~Ea~~~~~-------aG~~~il~~~ 81 (374)
T cd06812 42 KSLEVARRLLAAGAS--PATVSTLKEAEAFAE-------AGYRDILYAV 81 (374)
T ss_pred CCHHHHHHHHhCCCC--cEEEccHHHHHHHHH-------cCCCeeEEeC
Confidence 344445566788874 688889989887643 4776555554
No 447
>PRK06256 biotin synthase; Validated
Probab=35.80 E-value=5.8e+02 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRIT 138 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvt 138 (706)
..+.+.-+++++.+.+.|+.-+-+.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~ 114 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIV 114 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4688999999999999998655554
No 448
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=35.79 E-value=61 Score=34.31 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=44.9
Q ss_pred EecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 236 IGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
|| ..|-+|=.+..++.++.++|++.|.+..+++++ +|++| |---...-++|-+.|.++
T Consensus 81 ~~-~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~---~nv~I--KIPaT~~Gl~A~~~L~~~ 138 (252)
T cd00439 81 TE-ADGRVSVEVSARLADDTQGMVEAAKYLSKVVNR---RNIYI--KIPATAEGIPAIKDLIAA 138 (252)
T ss_pred hC-CCCeEEEEEeccccCCHHHHHHHHHHHHHhcCc---ccEEE--EeCCCHHHHHHHHHHHHC
Confidence 55 667777777777888999999999998888765 57777 555556778888888765
No 449
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=35.73 E-value=2.6e+02 Score=30.27 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=40.7
Q ss_pred CcCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 159 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
.+++||.+|=.+ ++.-+..+++ +++-|.|-|+..|.-. ++.+.|+.+|+++=
T Consensus 215 ~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~-------------------------~~~~~a~~~gi~~~ 269 (320)
T PRK02714 215 DYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPS-------------------------RLRQFCQQHPLDAV 269 (320)
T ss_pred hCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHH-------------------------HHHHHHHHhCCCEE
Confidence 478999999764 3444444444 4777999999998722 34577999999999
Q ss_pred EecC
Q 005248 236 IGTN 239 (706)
Q Consensus 236 IGvN 239 (706)
+|-.
T Consensus 270 ~~~~ 273 (320)
T PRK02714 270 FSSV 273 (320)
T ss_pred EEec
Confidence 9843
No 450
>PLN02591 tryptophan synthase
Probab=35.72 E-value=4e+02 Score=28.37 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH---------HH--HHH---------HHHHHHhhccCCcCcceeeccCCCHHH
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGK---------RE--ADA---------CFEIKNSLVQKNYNIPLVADIHFAPSV 174 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~---------~~--A~a---------l~~I~~~L~~~g~~iPLVADIHF~~~~ 174 (706)
-|.+.|++-++.|.++|||++=+-+|-- ++ -+| +=++.+++|+ ..++|+|-=.-||+=.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~-~~~~p~ilm~Y~N~i~ 91 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP-QLSCPIVLFTYYNPIL 91 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHH
Confidence 3889999999999999999999998742 11 111 2233344663 4889988655666422
Q ss_pred -------HHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec
Q 005248 175 -------ALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (706)
Q Consensus 175 -------Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv 238 (706)
...|.++ ++.+=|+.=- | |...++.++|+++|+..=.=|
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP-------~------------------ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLP-------L------------------EETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCC-------H------------------HHHHHHHHHHHHcCCeEEEEe
Confidence 2355565 8887766211 1 244678999999998764444
No 451
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.69 E-value=1.3e+02 Score=30.73 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCCeEEEecC--CCCCchhHHHhhCC--ChHHHHHHHHHHHHHHHHCCCCcEEEEEecC--------Ch
Q 005248 219 VFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGD--SPRGMVESAFEFARICRKLDFHNFLFSMKAS--------NP 286 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IRIGvN--~GSL~~~il~rygd--t~eamVeSAle~~~i~e~~~f~~iviS~KaS--------nv 286 (706)
.++.+-+.++++|+.+- +++ +++++..+.. ++ .-+..++..-+.+++|..+|-.-|++..=.. ..
T Consensus 48 ~~~~l~~~~~~~gl~v~-s~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~ 124 (275)
T PRK09856 48 GIKQIKALAQTYQMPII-GYTPETNGYPYNMML--GDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIW 124 (275)
T ss_pred HHHHHHHHHHHcCCeEE-EecCcccCcCccccC--CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHH
Confidence 45667788899999883 443 2222222111 11 1245677778888999999999998854211 23
Q ss_pred hHHHHHHHHHHHhhhcCCCCCccc
Q 005248 287 VVMVQAYRLLVAEMYVHGWDYPLH 310 (706)
Q Consensus 287 ~~~i~ayrlla~~~~~eg~~YPLH 310 (706)
+.+++.++.|++...+.|..+-+|
T Consensus 125 ~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 125 GRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEe
Confidence 566778888888877766666555
No 452
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=35.63 E-value=2.1e+02 Score=31.22 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCeEEEecCCCCCchhHHHh---hC-CC---------h---------HHHHHHHHHHHHHHHHCCCC
Q 005248 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY---YG-DS---------P---------RGMVESAFEFARICRKLDFH 275 (706)
Q Consensus 219 ~f~~vv~~ake~~~~IRIGvN~GSL~~~il~r---yg-dt---------~---------eamVeSAle~~~i~e~~~f~ 275 (706)
.|.++++.++++|+.+.|=+|.--|+++.+++ +| +. + .+-.+.+++.++.+.+.|+.
T Consensus 78 ~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~ 156 (378)
T PRK05301 78 DLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYP 156 (378)
T ss_pred hHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCc
Confidence 46778999999998888888865567655433 23 11 1 12455666667777777763
No 453
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=35.58 E-value=2.2e+02 Score=28.53 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=94.8
Q ss_pred cCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC-CCHHHHHHHhhhcCceeeCCCCCCcchhhccccccchHH
Q 005248 130 QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDE 208 (706)
Q Consensus 130 aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~~~~kiRINPGNig~~~k~F~~~~Ytdee 208 (706)
++..|+=|.+-+....+..+..++.+.+.|+..-.+-+++ -+.....+.+..++-|=+.-||--.--
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~------------ 95 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLL------------ 95 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHH------------
Confidence 5677777777776666777888888888898755444443 234455566778999999999863321
Q ss_pred HHHHHhhHHh--hHHHHHHHHHHcCCeEEEecCCCCCchhHHHhh--CCChHH-HHHHHHHHHHHHHHCCCCcEEEEEec
Q 005248 209 YQKELQHIEE--VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY--GDSPRG-MVESAFEFARICRKLDFHNFLFSMKA 283 (706)
Q Consensus 209 Y~~El~~I~~--~f~~vv~~ake~~~~IRIGvN~GSL~~~il~ry--gdt~ea-mVeSAle~~~i~e~~~f~~iviS~Ka 283 (706)
+.+++ -+..+.+.++ +|+++ +|+.+|+. ++.++ +.+|.. -+ ..+..+-+||-+..|.-=-
T Consensus 96 -----~~l~~t~~~~~i~~~~~-~G~v~-~G~SAGA~---~~~~~~~~~~~~~~~~-----~~~~~~GLgl~~~~i~pH~ 160 (210)
T cd03129 96 -----SVLRETPLLDAILKRVA-RGVVI-GGTSAGAA---VMGETGIGTTPSEPEV-----TPPMAPGLGLLPGIIDPHF 160 (210)
T ss_pred -----HHHHhCChHHHHHHHHH-cCCeE-EEcCHHHH---HhhhccccCCCCcccc-----ccccccCCCCcceeECCCC
Confidence 22222 3456677777 78776 89999987 55654 333311 00 0145666777777776665
Q ss_pred CChhHHHHHHHHHHHhhhcCCCCCcccccccccC
Q 005248 284 SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (706)
Q Consensus 284 Snv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG 317 (706)
++...+-+..+++++. ..++=+|+.|..
T Consensus 161 ~~~~R~~rl~~~~~~~------~~~~gigide~t 188 (210)
T cd03129 161 DSRGREGRLLELLAAN------PTPLGIGIDEGT 188 (210)
T ss_pred CccchHHHHHHHHHhC------CCccEEEecCCc
Confidence 5544443333334332 345566666643
No 454
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=35.57 E-value=4.6e+02 Score=29.15 Aligned_cols=134 Identities=13% Similarity=0.262 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhhcCce
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~-------A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~~~ki 185 (706)
..++++.-+++|+.|.+.|..-+.++-++.-. ...+.++.+.|.+ +| .+..+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~----~~-----------------~~~~i 223 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ----IP-----------------GIKRI 223 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc----CC-----------------CCcEE
Confidence 45789999999999999999888887443311 0112222222111 00 12234
Q ss_pred ee---CCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcC---CeEEEecCCCCCchhHHHhhCCChHHHH
Q 005248 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (706)
Q Consensus 186 RI---NPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~---~~IRIGvN~GSL~~~il~rygdt~eamV 259 (706)
|+ +|.++- .++++..++.+ .-+=||+-|| |+++|++++-.. -+
T Consensus 224 r~~~~~p~~~~---------------------------~ell~~m~~~~~~~~~l~lglESg--s~~vLk~m~R~~--~~ 272 (414)
T TIGR01579 224 RLSSIDPEDID---------------------------EELLEAIASEKRLCPHLHLSLQSG--SDRVLKRMRRKY--TR 272 (414)
T ss_pred EEeCCChhhCC---------------------------HHHHHHHHhcCccCCCeEECCCcC--ChHHHHhcCCCC--CH
Confidence 43 344331 23566666554 2466677655 588999886321 13
Q ss_pred HHHHHHHHHHHH--CCC---CcEEEEEecCChhHHHHHHHHHHH
Q 005248 260 ESAFEFARICRK--LDF---HNFLFSMKASNPVVMVQAYRLLVA 298 (706)
Q Consensus 260 eSAle~~~i~e~--~~f---~~iviS~KaSnv~~~i~ayrlla~ 298 (706)
+..++.++.+.+ .|+ -++++-+=--+..++.+..+++.+
T Consensus 273 ~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~ 316 (414)
T TIGR01579 273 DDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKE 316 (414)
T ss_pred HHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHh
Confidence 556677777777 666 467777755555555555555543
No 455
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=35.47 E-value=2.2e+02 Score=32.04 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=41.9
Q ss_pred cCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEE
Q 005248 160 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (706)
Q Consensus 160 ~~iPLVADIHF-~~~~Al~a~~--~~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRI 236 (706)
++||+.+|=|. +..-+...++ ++|=+++.+...|.-. .+.++.+.|..+|+++
T Consensus 260 ~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit----------------------~~~kia~lA~a~gi~~-- 315 (394)
T PRK15440 260 AGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLT----------------------ELVKIAALAKARGQLV-- 315 (394)
T ss_pred CCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHH----------------------HHHHHHHHHHHcCCee--
Confidence 44788888765 3444444444 5999999999998733 5678999999999997
Q ss_pred ecCCCC
Q 005248 237 GTNHGS 242 (706)
Q Consensus 237 GvN~GS 242 (706)
+.|+|
T Consensus 316 -~pH~~ 320 (394)
T PRK15440 316 -VPHGS 320 (394)
T ss_pred -cccCH
Confidence 44553
No 456
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=35.47 E-value=81 Score=33.62 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCccee---eccCCCHHHHHHHhhhcCceeeCCCCCC
Q 005248 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV---ADIHFAPSVALRVAECFDKIRVNPGNFA 193 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV---ADIHF~~~~Al~a~~~~~kiRINPGNig 193 (706)
.+..++..+++++|||+.+=+-.... +..++|.++ +++|+| |=-+-|..+... -|=+=++|+..
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~~---~~~~~i~~~-----v~iP~igiGaG~~~dgqvlv~----~D~lG~~~~~~- 223 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVPA---ELAKEITEA-----LSIPTIGIGAGPDCDGQVLVW----HDMLGLSPGFK- 223 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH---HHHHHHHHh-----CCCCEEEeccCCCCCceeehH----HhhcCCCCCCC-
Confidence 68999999999999999999987753 467778885 779999 322333332211 11123444421
Q ss_pred cchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHc
Q 005248 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (706)
Q Consensus 194 ~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~ 230 (706)
-+|- +.|.+..+.+.+.++..++..|+.
T Consensus 224 ---p~f~------k~~~~~~~~~~~a~~~y~~~v~~~ 251 (254)
T cd06557 224 ---PKFV------KRYADLGELIREAVKAYVEEVKSG 251 (254)
T ss_pred ---CCcH------HHHhhhHHHHHHHHHHHHHHHhcC
Confidence 1244 457777777888888887777654
No 457
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=35.44 E-value=89 Score=32.81 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCccee
Q 005248 118 AGTVEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (706)
Q Consensus 118 ~atv~Qi~~L~-~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV 165 (706)
+.+.+-+..|. +.||+.+=+++++. .|-+++.++++ +++|+|
T Consensus 47 ~~~~~~~~~L~~~~g~d~ivIaCNTA-~a~~~~~l~~~-----~~iPii 89 (251)
T TIGR00067 47 EYVLELLTFLKERHNIKLLVVACNTA-SALALEDLQRN-----FDFPVV 89 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCchH-HHHHHHHHHHH-----CCCCEE
Confidence 55667778998 99999999999998 45578999985 789986
No 458
>PRK08005 epimerase; Validated
Probab=35.43 E-value=2.6e+02 Score=29.09 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=48.1
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhh
Q 005248 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (706)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~ 180 (706)
-|+-|-=|.+. --..|..++++||++|=+-+-.. .-.+.+..||+ .|+..=|.=.-+=.......-++
T Consensus 59 ~~~DvHLMv~~-------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~----~G~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 59 HPLSFHLMVSS-------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRA----IGAKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred CCeEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHH----cCCcEEEEECCCCCHHHHHHHHH
Confidence 45666666653 23478889999999877765522 23355666666 47765444333322233333444
Q ss_pred hcCcee---eCCCCCCc
Q 005248 181 CFDKIR---VNPGNFAD 194 (706)
Q Consensus 181 ~~~kiR---INPGNig~ 194 (706)
.+|.|= +|||--|-
T Consensus 128 ~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQ 144 (210)
T ss_pred hcCEEEEEEecCCCccc
Confidence 566654 79997764
No 459
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=35.42 E-value=1.1e+02 Score=29.57 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCC-EEEEecCCHHHHHHHHHHHHhhccCCc--CcceeeccC
Q 005248 117 VAGTVEEVMRIADQGAD-LVRITVQGKREADACFEIKNSLVQKNY--NIPLVADIH 169 (706)
Q Consensus 117 v~atv~Qi~~L~~aGce-iVRvtv~~~~~A~al~~I~~~L~~~g~--~iPLVADIH 169 (706)
+.+-.+...++.+.||+ ++-|++.+..+.++.. ++ .+. +.||++|-+
T Consensus 50 ~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~---~~---~~~~~~f~lLsD~~ 99 (155)
T cd03013 50 LPGYVENADELKAKGVDEVICVSVNDPFVMKAWG---KA---LGAKDKIRFLADGN 99 (155)
T ss_pred HHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHH---Hh---hCCCCcEEEEECCC
Confidence 44556667888999995 9999999988765553 22 234 789999954
No 460
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.35 E-value=3.2e+02 Score=29.67 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=56.1
Q ss_pred CCCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCC
Q 005248 537 IDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG 616 (706)
Q Consensus 537 ~~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~ 616 (706)
..|+++-+. ....+...........+.+++ +...|+.+||.=.. + .-.++-|++. |+ +-|++..+.
T Consensus 42 ~sPvIlq~~--~~~~~~~g~~~~~~~~~~~A~-~~~VPValHLDH~~--~--~e~i~~ai~~------Gf-tSVM~DgS~ 107 (284)
T PRK12857 42 KSPVIIQAS--QGAIKYAGIEYISAMVRTAAE-KASVPVALHLDHGT--D--FEQVMKCIRN------GF-TSVMIDGSK 107 (284)
T ss_pred CCCEEEEec--hhHhhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC--C--HHHHHHHHHc------CC-CeEEEeCCC
Confidence 356666533 233444555555555677777 78899999984221 1 1346666664 55 789998888
Q ss_pred CChhhHhHHHHHHHHHhhcc
Q 005248 617 QDFDFLRDTSFNLLQGCRMR 636 (706)
Q Consensus 617 ~p~~ev~~~a~~ILqa~rlR 636 (706)
.|.+|..+...++..-+.-+
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~ 127 (284)
T PRK12857 108 LPLEENIALTKKVVEIAHAV 127 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 89888767778887766543
No 461
>PRK13189 peroxiredoxin; Provisional
Probab=35.26 E-value=79 Score=32.54 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=43.5
Q ss_pred CceEEEeccC--C--CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhccCCcCcceeeccC
Q 005248 102 HPIRVQTMTT--N--DTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 102 ~PI~VQSMt~--t--~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~a-l~~I~~~L~~~g~~iPLVADIH 169 (706)
.++.+=+.-. | -+..+.+-.+...++.+.||+++=|++.+..+..+ +..+++.+ ..+++.|+++|..
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~-g~~i~fPllsD~~ 107 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKL-GVEIEFPIIADDR 107 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhc-CcCcceeEEEcCc
Confidence 3555544422 2 23344455556667788999999999999877655 44465532 1247889999965
No 462
>PRK08185 hypothetical protein; Provisional
Probab=35.13 E-value=6.3e+02 Score=27.55 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHhhccCCcCcceeeccCCCHH----HHHHHhhh-
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQ------GKREADACFEIKNSLVQKNYNIPLVADIHFAPS----VALRVAEC- 181 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~----~Al~a~~~- 181 (706)
++.|.+-.-.=+..-++.++-++=-..| +.+-+..+..+.++ +++|++ +|.|+- ....|++.
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~-----~~vPV~--lHLDHg~~~e~i~~ai~~G 91 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKR-----SPVPFV--IHLDHGATIEDVMRAIRCG 91 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHH-----CCCCEE--EECCCCCCHHHHHHHHHcC
Q ss_pred cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHH
Q 005248 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (706)
Q Consensus 182 ~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeS 261 (706)
+..|=|-=-+.-..+. -+..+++++.|+.+|+++--=+ |.+...-...-+.+.+.+..+
T Consensus 92 f~SVM~D~S~l~~eeN-------------------i~~t~~vv~~a~~~gv~vE~El--G~vg~~e~~~~~~~~~~~~t~ 150 (283)
T PRK08185 92 FTSVMIDGSLLPYEEN-------------------VALTKEVVELAHKVGVSVEGEL--GTIGNTGTSIEGGVSEIIYTD 150 (283)
T ss_pred CCEEEEeCCCCCHHHH-------------------HHHHHHHHHHHHHcCCeEEEEE--eeccCcccccccccccccCCC
Q ss_pred HHHHHHHHHHCCCCcEEEEE-------ecC-ChhHHHHHHHHHHHhhhcCCCCCcc
Q 005248 262 AFEFARICRKLDFHNFLFSM-------KAS-NPVVMVQAYRLLVAEMYVHGWDYPL 309 (706)
Q Consensus 262 Ale~~~i~e~~~f~~iviS~-------KaS-nv~~~i~ayrlla~~~~~eg~~YPL 309 (706)
.-|-.+..++-|-+-+-+|+ |.+ .+..-++--+.+.+. .+-||
T Consensus 151 peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~-----~~iPL 201 (283)
T PRK08185 151 PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER-----VDIPL 201 (283)
T ss_pred HHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh-----hCCCE
No 463
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=34.74 E-value=88 Score=34.11 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 005248 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (706)
Q Consensus 218 ~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~ 287 (706)
..+.++++.++++|+.+.|=+|. ++. +.++.+ +.+.+.+.||+|+.|..
T Consensus 145 p~l~eli~~~k~~Gi~~~L~TNG-~~~-------------------e~l~~L-~~~~d~i~VSLda~~~e 193 (322)
T PRK13762 145 PYLPELIEEFHKRGFTTFLVTNG-TRP-------------------DVLEKL-EEEPTQLYVSLDAPDEE 193 (322)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-CCH-------------------HHHHHH-HhcCCEEEEEccCCCHH
Confidence 35788999999999999888876 551 122223 44678999999999854
No 464
>TIGR00035 asp_race aspartate racemase.
Probab=34.72 E-value=84 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCccee
Q 005248 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV 165 (706)
....+-+++|+++|||.+=+++++.... +.+|+++ +++|++
T Consensus 62 ~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~-----~~iPii 102 (229)
T TIGR00035 62 PILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKA-----IGIPLI 102 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHh-----CCCCEe
Confidence 4567778899999999999999996554 6778774 789986
No 465
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=34.31 E-value=14 Score=38.49 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=40.7
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhhhcCC------CCCcccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCC
Q 005248 276 NFLFSMKASNPVVMVQAYRLLVAEMYVHG------WDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEP 349 (706)
Q Consensus 276 ~iviS~KaSnv~~~i~ayrlla~~~~~eg------~~YPLHLGVTEAG~g~~G~IKSavGiG~LL~dGIGDTIRVSLT~d 349 (706)
+++++=|-.+..+.+..-|.|..+ | |.||.+||+++++.... . --|
T Consensus 42 r~~L~~~P~s~~EA~~~vr~l~~~----g~v~VGl~Qf~aGlgv~n~~~l~~-----------------------d-lfD 93 (207)
T PRK13843 42 RLVLVPKPKTPDEAMALIRQYVGQ----AVVRVGLTQYPAGVGVVDAGQLKP-----------------------D-LVD 93 (207)
T ss_pred eeeecCCCCCHHHHHHHHHHHHhc----CceeeeeEEeccccceeehhhccH-----------------------H-HHh
Confidence 344455556777777766666654 4 78999999999987651 1 135
Q ss_pred CcccchHHHHHHH
Q 005248 350 PEKEIDPCRRLAN 362 (706)
Q Consensus 350 P~~EV~va~~l~~ 362 (706)
|-+-+.++..|++
T Consensus 94 pC~NLr~Gt~if~ 106 (207)
T PRK13843 94 ACENLRMGTALFA 106 (207)
T ss_pred hhhhhHHHHHHHH
Confidence 7777888888777
No 466
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.22 E-value=1.8e+02 Score=29.44 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC-CcCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCcchhhc
Q 005248 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK-NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQF 199 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~-g~~iPLVADIHF~~~~Al~a~~~~~kiRINPGNig~~~k~F 199 (706)
.+-+.++...++.|+=|.+-+...-+.+..+++.+.+. |+.+-.+-++. ++. ..+.++.++.|=+.-||...
T Consensus 21 ~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-~~~-~~~~l~~ad~I~l~GG~~~~----- 93 (212)
T cd03146 21 DDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-TED-PLDALLEADVIYVGGGNTFN----- 93 (212)
T ss_pred HHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-ccc-HHHHHhcCCEEEECCchHHH-----
Confidence 33344444556777777777666667788899999999 99877665544 222 23555668888887777643
Q ss_pred cccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCC
Q 005248 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (706)
Q Consensus 200 ~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL 243 (706)
+.+.|++. .+..+++.+-++|+++ +|+-.|+.
T Consensus 94 ---------~~~~l~~~--~l~~~l~~~~~~g~~i-~G~SAGa~ 125 (212)
T cd03146 94 ---------LLAQWREH--GLDAILKAALERGVVY-IGWSAGSN 125 (212)
T ss_pred ---------HHHHHHHc--CHHHHHHHHHHCCCEE-EEECHhHH
Confidence 22333322 4566677666788776 89988875
No 467
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=33.95 E-value=2e+02 Score=29.98 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=80.3
Q ss_pred cccccchHHHHHHHhhHHhhHHHHHHHHHHcCC---eEEEecCCCCCchhHHHhhCCChH--HHHHHHHHHHHHHHHCCC
Q 005248 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR---AVRIGTNHGSLSDRIMSYYGDSPR--GMVESAFEFARICRKLDF 274 (706)
Q Consensus 200 ~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~---~IRIGvN~GSL~~~il~rygdt~e--amVeSAle~~~i~e~~~f 274 (706)
..+=+|+.|-+.||.--+|....|+..++..-. |.=|-+||-||-+ .+. -.+..||--. ++++..|
T Consensus 15 k~~Glt~gEIAdELNvSreTa~WL~~r~~~~~~~~~p~Di~i~W~siG~--------s~sRl~~Is~am~Dm-~m~~~~~ 85 (203)
T COG0856 15 KSKGLTTGEIADELNVSRETATWLLTRAFKKESVPAPVDIKIDWRSIGK--------SGSRLRYISEAMADM-IMEKVSF 85 (203)
T ss_pred HHCCCcHHHhhhhhhhhHHHHHHHHhhhhhccCCCCCcceEEechhhcc--------chHHHHHHHHHHHHH-HHHhccc
Confidence 344578999999999999999999988764422 5578999999843 221 2233333322 7788888
Q ss_pred -CcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhH
Q 005248 275 -HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (706)
Q Consensus 275 -~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSa 327 (706)
-|+|+-+-.|.++.. .+.|.+|.++-.-|--|=+-+|-|.+..|.|.|-
T Consensus 86 evDvVvGIa~sGvPlA----tmvA~elg~elaiY~PrK~~~de~~~~~G~iS~N 135 (203)
T COG0856 86 EVDVVVGIAISGVPLA----TMVAYELGKELAIYHPRKHRKDEGAGKGGSISSN 135 (203)
T ss_pred eeEEEEEEeecCccHH----HHHHHHhCCceEEEecccccccccCCcCceeecc
Confidence 799999999998853 2334444433344666888899888888887654
No 468
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=33.81 E-value=4.6e+02 Score=26.66 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcCcceeeccCCC--HHHHHHH-------hhh
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRV-------AEC 181 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~--A~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al~a-------~~~ 181 (706)
|+.|.+..++=+.++.+ ..+++-+-.+=..+ .+.+.++.+.|++++ .|+++|.=+. |+..... .+.
T Consensus 8 D~~~~~~a~~i~~~~~~-~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~ 84 (226)
T PF00215_consen 8 DPTDLEEALRIADELGD-YVDIIKVGTPLFLAYGLEALPEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFEL 84 (226)
T ss_dssp -SSSHHHHHHHHHHHGG-GSSEEEEEHHHHHHHCHHHHHHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-cceEEEEChHHHhcCChhhHHHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcC
Confidence 55666666665666655 78888887664443 226778888888877 9999996544 4433332 343
Q ss_pred -cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEec-CCCCCchhHHHhhC-CChHHH
Q 005248 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYG-DSPRGM 258 (706)
Q Consensus 182 -~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGv-N~GSL~~~il~ryg-dt~eam 258 (706)
+|-+=++|=. + .+-++++++.|++++.+.-++| --.|.+..-+..++ .....+
T Consensus 85 gaD~vTv~~~~--G----------------------~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~ 140 (226)
T PF00215_consen 85 GADAVTVHPFA--G----------------------DDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEI 140 (226)
T ss_dssp TESEEEEEGTT--H----------------------HHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHH
T ss_pred CCcEEEEeccC--C----------------------HHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHH
Confidence 8888888743 2 2368899999999982222333 23444443333333 112333
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEe
Q 005248 259 VESAFEFARICRKLDFHNFLFSMK 282 (706)
Q Consensus 259 VeSAle~~~i~e~~~f~~iviS~K 282 (706)
|+.+.+ ...+.|+.-++.|..
T Consensus 141 v~~~~~---~~~~~g~~G~v~~~~ 161 (226)
T PF00215_consen 141 VHRAAD---LAAKAGVDGIVCSAT 161 (226)
T ss_dssp HHHHHH---HHHHTTEEEEEETTT
T ss_pred HHHHHH---hhccccccCcccccc
Confidence 333333 233467777777654
No 469
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=33.68 E-value=6.6e+02 Score=28.13 Aligned_cols=150 Identities=22% Similarity=0.237 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHH-HHHHHHHhhccCCcCcceeeccCCC----------HHHHHHHhhh--c
Q 005248 117 VAGTVEEVMRIADQGADLVRI-TVQGKREAD-ACFEIKNSLVQKNYNIPLVADIHFA----------PSVALRVAEC--F 182 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-tv~~~~~A~-al~~I~~~L~~~g~~iPLVADIHF~----------~~~Al~a~~~--~ 182 (706)
+++-.+|+..|.+-|+|++=| |+.|..+|+ ++..+++.-.++|..+|+++-.-++ +..++..++. .
T Consensus 142 ~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~ 221 (311)
T COG0646 142 VEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGP 221 (311)
T ss_pred HHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCC
Confidence 578899999999999999988 567776665 4667777777899999999864443 3444444443 3
Q ss_pred CceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHh--hCCChHHHHH
Q 005248 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY--YGDSPRGMVE 260 (706)
Q Consensus 183 ~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~r--ygdt~eamVe 260 (706)
+-|=+|=+ .| .. .+++.++.+-+ -.+..+=.==|.| |+.-.=++ |-.+|+-|-+
T Consensus 222 ~~vGlNCa-~G--p~-----------------~m~~~l~~ls~---~~~~~vs~~PNAG-LP~~~g~~~~Y~~~p~~~a~ 277 (311)
T COG0646 222 DAVGLNCA-LG--PD-----------------EMRPHLRELSR---IADAFVSVYPNAG-LPNAFGERAVYDLTPEYMAE 277 (311)
T ss_pred cEEeeccc-cC--HH-----------------HHHHHHHHHHh---ccCceEEEeCCCC-CCcccCCccccCCCHHHHHH
Confidence 34444432 11 11 11222222222 2344555556776 55544444 7789999988
Q ss_pred HHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 005248 261 SAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (706)
Q Consensus 261 SAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrl 295 (706)
...+|+ +.|+=|||=-|=-+.|. =|+|.+.
T Consensus 278 ~~~~f~----~~g~vnIvGGCCGTTPe-HIraia~ 307 (311)
T COG0646 278 ALAEFA----EEGGVNIVGGCCGTTPE-HIRAIAE 307 (311)
T ss_pred HHHHHH----HhCCceeeccccCCCHH-HHHHHHH
Confidence 777765 46777777666666533 4554443
No 470
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.68 E-value=1.6e+02 Score=30.35 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=55.2
Q ss_pred HHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 005248 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (706)
Q Consensus 216 I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrl 295 (706)
.++.+.+++++|+++|+++=| |.++|.+.. + + .| ....++.|.++|-.-|+|+-=|-.+...-.-+..
T Consensus 164 ~~~~~~~il~~~~~~g~~lEI--Nt~~l~~~~-~-~--~~------~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~ 231 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLEI--NTRRLDDKR-S-V--EN------LVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKF 231 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEE--ECcccCCCC-C-C--CC------HHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHH
Confidence 455677889999999999965 778875421 1 1 12 2557888999998878999888888777655555
Q ss_pred HHHhhhcCCCC
Q 005248 296 LVAEMYVHGWD 306 (706)
Q Consensus 296 la~~~~~eg~~ 306 (706)
..+.+.+.|+.
T Consensus 232 ~~~~l~~~G~~ 242 (255)
T PRK05588 232 ALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHcCCE
Confidence 55555444544
No 471
>PRK15452 putative protease; Provisional
Probab=33.26 E-value=2.6e+02 Score=32.23 Aligned_cols=129 Identities=14% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHh
Q 005248 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (706)
Q Consensus 172 ~~~Al~a~~~-~~kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~r 250 (706)
...+..|+++ +|.|=+-...++-+.+ ...++. +.+++.|+.|+++|+.+-+-+| .+..
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~-----------edl~eav~~ah~~g~kvyvt~n--~i~~----- 71 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNH-----------ENLALGINEAHALGKKFYVVVN--IAPH----- 71 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhh---ccCCCH-----------HHHHHHHHHHHHcCCEEEEEec--CcCC-----
Confidence 3455567776 9999886665654321 012221 2367789999999999999999 3322
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCchhhHHHH
Q 005248 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330 (706)
Q Consensus 251 ygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~~~~eg~~YPLHLGVTEAG~g~~G~IKSavGi 330 (706)
+.=.+...++++.+.++|.+-|+++ |+-.+ +++.+. ..+.|+|+.. .=.|-++.++
T Consensus 72 -----e~el~~~~~~l~~l~~~gvDgvIV~----d~G~l----~~~ke~----~p~l~ih~st-------qlni~N~~a~ 127 (443)
T PRK15452 72 -----NAKLKTFIRDLEPVIAMKPDALIMS----DPGLI----MMVREH----FPEMPIHLSV-------QANAVNWATV 127 (443)
T ss_pred -----HHHHHHHHHHHHHHHhCCCCEEEEc----CHHHH----HHHHHh----CCCCeEEEEe-------cccCCCHHHH
Confidence 2335667778888899999999975 54432 333333 2467999853 3456778888
Q ss_pred HHHhhcCCCceeEEecCC
Q 005248 331 GTLLQDGLGDTIRVSLTE 348 (706)
Q Consensus 331 G~LL~dGIGDTIRVSLT~ 348 (706)
-.+...|+ -||-|+.
T Consensus 128 ~f~~~lG~---~rvvLSr 142 (443)
T PRK15452 128 KFWQQMGL---TRVILSR 142 (443)
T ss_pred HHHHHCCC---cEEEECC
Confidence 89988887 3555544
No 472
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=33.03 E-value=77 Score=33.39 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee
Q 005248 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (706)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA 166 (706)
..+.+..+++.+++++|||+.|=+..++.++++ +|.+. .++|+++
T Consensus 152 ~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~---~i~~~-----~~~P~~~ 196 (240)
T cd06556 152 DEAGEQLIADALAYAPAGADLIVMECVPVELAK---QITEA-----LAIPLAG 196 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH---HHHHh-----CCCCEEE
Confidence 346889999999999999999999888666555 45553 7799885
No 473
>PRK13599 putative peroxiredoxin; Provisional
Probab=32.81 E-value=99 Score=31.79 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH-HHHHhhccCCcCcceeeccC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACF-EIKNSLVQKNYNIPLVADIH 169 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~-~I~~~L~~~g~~iPLVADIH 169 (706)
...+-.+-..++.+.||++|-|++.+..+-.+.. .|++. -..+++.|+++|-+
T Consensus 47 El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~-~~~~i~fPil~D~~ 100 (215)
T PRK13599 47 EFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN-TNIAIPFPVIADDL 100 (215)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh-cCCCCceeEEECCC
Confidence 3344444455667789999999999987666543 46642 23468899999954
No 474
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.65 E-value=23 Score=33.89 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=19.6
Q ss_pred HHHHHhhcccCCceEeccCCCCcc
Q 005248 628 NLLQGCRMRNTKTEYVSCPSCGRT 651 (706)
Q Consensus 628 ~ILqa~rlR~~kte~ISCPsCGRT 651 (706)
.+.=-.|+..++.-.|-||+|||.
T Consensus 55 ~VYfwIGmlStkav~V~CP~C~K~ 78 (114)
T PF11023_consen 55 AVYFWIGMLSTKAVQVECPNCGKQ 78 (114)
T ss_pred HHHHHhhhhcccceeeECCCCCCh
Confidence 344456888999999999999996
No 475
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=32.55 E-value=6.7e+02 Score=27.68 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEEE
Q 005248 257 GMVESAFEFARICRKLDFHNFLFSM 281 (706)
Q Consensus 257 amVeSAle~~~i~e~~~f~~iviS~ 281 (706)
...+.+.+.++.+++.+++==.||+
T Consensus 210 ~~~~~~~~~~~~l~~~g~~l~~idi 234 (417)
T TIGR01048 210 EAAEKVVDLVEELKAEGIDLEFLDL 234 (417)
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEe
Confidence 3455566666666666653334443
No 476
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.55 E-value=6.8e+02 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCH
Q 005248 113 DTKDVAGTVEEVMRIADQGADLVRITVQGK 142 (706)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~ 142 (706)
..++.+..+++|+.|.+.|+.-|.++-++.
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~ 204 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRGAREITLLGQNV 204 (446)
T ss_pred eeCCHHHHHHHHHHHHHCCCeEEEEEecCc
Confidence 346789999999999999988888876554
No 477
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.52 E-value=1.4e+02 Score=32.31 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCce
Q 005248 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKI 185 (706)
Q Consensus 120 tv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~ki 185 (706)
|.+|..+.+++|+|+|.+--++.++.+.+-++.+ ...-++++.|=-..++.-+.+.++. +|-|
T Consensus 191 tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~---~~~~~~~ieAsGgIt~~ni~~ya~~GvD~I 254 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRN---ANYPHVLLEASGNITLENINAYAKSGVDAI 254 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh---ccCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 7899999999999999999998887766665532 1123467888888898888887775 7655
No 478
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.47 E-value=2.5e+02 Score=27.43 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=51.1
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-HH-HHHHHHHHHHhhccCCcCcceeeccC--CCHHHHH
Q 005248 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-KR-EADACFEIKNSLVQKNYNIPLVADIH--FAPSVAL 176 (706)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~-~~-~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al 176 (706)
+.||.+.-|++..- -.++..+.++|++++=+-... .+ ..+.++.+++ ..++++.+++ +++.-++
T Consensus 53 ~~~i~~~~~v~~~~------~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~------~g~~~~v~~~~~~t~~e~~ 120 (202)
T cd04726 53 DKIIVADLKTADAG------ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK------YGKEVQVDLIGVEDPEKRA 120 (202)
T ss_pred CCEEEEEEEecccc------HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH------cCCeEEEEEeCCCCHHHHH
Confidence 56777777766332 146688999999998764432 22 2334444444 4578888744 5666666
Q ss_pred HHhhh-cCceeeCCCC
Q 005248 177 RVAEC-FDKIRVNPGN 191 (706)
Q Consensus 177 ~a~~~-~~kiRINPGN 191 (706)
.+... +|-|-++|+-
T Consensus 121 ~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 121 KLLKLGVDIVILHRGI 136 (202)
T ss_pred HHHHCCCCEEEEcCcc
Confidence 77774 8989999873
No 479
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=32.45 E-value=89 Score=32.78 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCCEE-----EEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 005248 119 GTVEEVMRIADQGADLV-----RITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (706)
Q Consensus 119 atv~Qi~~L~~aGceiV-----Rvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINPGNi 192 (706)
-|++|....+++||++| |+.-.+.+-.+-+.+|.+.++..++++-++|=-.=++.-.++|++. ++-+=+.|--+
T Consensus 114 fs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl 193 (222)
T PRK12656 114 YTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred CCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 46899999999999999 5554545566778889999999999999888888888888888876 99999988766
No 480
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=32.30 E-value=2.8e+02 Score=27.86 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCHHHHHHHhhh-cCceeeCC
Q 005248 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP 189 (706)
Q Consensus 122 ~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-~~kiRINP 189 (706)
.|+..+.++||+.|=+-..+... +.+.++.+.... +.+-.+.++| +..-+..+.+. ++-+=+|+
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~-~~~~~~~~~~~~--~g~~~~v~v~-~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDD-EQLKELYELARE--LGMEVLVEVH-DEEELERALALGAKIIGINN 149 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCH-HHHHHHHHHHHH--cCCeEEEEEC-CHHHHHHHHHcCCCEEEEeC
Confidence 48999999999998766555543 444455444433 3455588998 77777777765 66666663
No 481
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.22 E-value=3.2e+02 Score=29.73 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccchhhhHHHHHHHhhhcCCceEEEeCCC
Q 005248 537 IDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG 616 (706)
Q Consensus 537 ~~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~~IkSa~~iG~LL~dGIGDtIrvslt~ 616 (706)
..|+++-+ .....+.............+++ +...|+.+||.=.. +.-.++.|+..| + +-|++..+.
T Consensus 42 ~sPvIiq~--~~~~~~~~g~~~~~~~~~~~A~-~~~VPV~lHLDHg~----~~e~i~~Ai~~G------f-tSVM~DgS~ 107 (284)
T PRK09195 42 HSPVIIAG--TPGTFSYAGTEYLLAIVSAAAK-QYHHPLALHLDHHE----KFDDIAQKVRSG------V-RSVMIDGSH 107 (284)
T ss_pred CCCEEEEc--ChhHHhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CHHHHHHHHHcC------C-CEEEeCCCC
Confidence 34666663 3334455666566666777877 78999999984221 124466666554 4 788988888
Q ss_pred CChhhHhHHHHHHHHHhhcc
Q 005248 617 QDFDFLRDTSFNLLQGCRMR 636 (706)
Q Consensus 617 ~p~~ev~~~a~~ILqa~rlR 636 (706)
.|.+|..+...++.+-+.-+
T Consensus 108 l~~eeNi~~T~~vv~~Ah~~ 127 (284)
T PRK09195 108 LPFAQNISLVKEVVDFCHRF 127 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 88888666667776655543
No 482
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.14 E-value=2.4e+02 Score=31.29 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCHHH-------------HHHHHHHHHhhccCC----cCcceeeccCCCHH
Q 005248 115 KDVAGTVEEVMRIADQGADLVRIT----VQGKRE-------------ADACFEIKNSLVQKN----YNIPLVADIHFAPS 173 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvt----v~~~~~-------------A~al~~I~~~L~~~g----~~iPLVADIHF~~~ 173 (706)
-++.+.+..+.++.+.+-. +.++ .++.+. .+-+..+++...+.+ +..|||.++--++.
T Consensus 200 vsT~G~~~~i~~l~d~~l~-~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~e 278 (356)
T PRK14455 200 VSTSGIAPKIYDFADEGLQ-INLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVE 278 (356)
T ss_pred EEecCchHhHHHHHhcccC-eeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHH
Confidence 3445556677777777655 4432 233222 222333333222222 24699999877766
Q ss_pred HHHHHhhhcC----ceeeCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCC
Q 005248 174 VALRVAECFD----KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (706)
Q Consensus 174 ~Al~a~~~~~----kiRINPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GS 242 (706)
-+.+-++.+. +|++=|-|=-+.. +|..-. ++++.++.+.++++|+.+.|.-..|.
T Consensus 279 d~~~La~ll~~l~~~VnLIPynp~~~~-ky~~ps-------------~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 279 HAEELADLLKGIKCHVNLIPVNPVPER-DYVRTP-------------KEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred HHHHHHHHHhcCCCcEEEEecCcCCCC-CCcCCC-------------HHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 6555555433 3444477743322 243321 34566677888999999988876654
No 483
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.88 E-value=6.8e+02 Score=27.00 Aligned_cols=136 Identities=8% Similarity=0.058 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcCcceeecc-CCCHHHHHHHhhh-cCceeeCCCC
Q 005248 116 DVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAEC-FDKIRVNPGN 191 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvtv--~~~~~A~al~~I~~~L~~~g~~iPLVADI-HF~~~~Al~a~~~-~~kiRINPGN 191 (706)
+.+...+-+.++.+.|...|-++= |.. -..+.+|-+.+++.|+.+=|+.-- .++...+..-.+. ++.|.|-=-
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll--~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSld- 114 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLA--RPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQ- 114 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccccc--cccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCc-
Confidence 344444444555667887777772 222 123455555566667655555443 3455555444343 555554210
Q ss_pred CCcchhhccccccchHHHHHHHhhH---HhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHH
Q 005248 192 FADRRAQFEQLEYTDDEYQKELQHI---EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (706)
Q Consensus 192 ig~~~k~F~~~~YtdeeY~~El~~I---~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i 268 (706)
-++++.|. .+... -+++.+.++.++++|+++.|-+. +.+ .+ ++...+.+++
T Consensus 115 -----------g~~~e~~d-~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v---v~~-------~N----~~~l~~~~~~ 168 (358)
T TIGR02109 115 -----------GVDEALAD-RIAGYKNAFEQKLAMARAVKAAGLPLTLNFV---IHR-------HN----IDQIPEIIEL 168 (358)
T ss_pred -----------CCCHHHHH-HhcCCccHHHHHHHHHHHHHhCCCceEEEEE---ecc-------CC----HHHHHHHHHH
Confidence 11122232 22222 23455566788899987654331 111 11 2233556778
Q ss_pred HHHCCCCcEEEE
Q 005248 269 CRKLDFHNFLFS 280 (706)
Q Consensus 269 ~e~~~f~~iviS 280 (706)
+.++|.+.+.++
T Consensus 169 ~~~lg~~~i~~~ 180 (358)
T TIGR02109 169 AIELGADRVELA 180 (358)
T ss_pred HHHcCCCEEEEE
Confidence 889999888774
No 484
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=31.84 E-value=2.1e+02 Score=31.42 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHHHhhHHhhHHHHHHHHHHcCCe-EEEecCCCCCchhHH--------HhhCCChHHHHHHHHHHHHHHHH-CCCCcEEE
Q 005248 210 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLF 279 (706)
Q Consensus 210 ~~El~~I~~~f~~vv~~ake~~~~-IRIGvN~GSL~~~il--------~rygdt~eamVeSAle~~~i~e~-~~f~~ivi 279 (706)
.+|+++|.+.|..=.+.|++.|-- |=|=.-||.|=..++ .+||.+.|.=..=++|-++-.++ .|-+ + |
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~-v 221 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-R-V 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-c-e
Confidence 457788889999889999998765 444445675544444 45775554433444444444443 4544 3 8
Q ss_pred EEecCC
Q 005248 280 SMKASN 285 (706)
Q Consensus 280 S~KaSn 285 (706)
++|-|-
T Consensus 222 ~vRis~ 227 (338)
T cd02933 222 GIRLSP 227 (338)
T ss_pred EEEECc
Confidence 888874
No 485
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=31.60 E-value=2.7e+02 Score=28.96 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceee-ccCCCHHHHHHHhhhcCceeeCCCCCCcchh
Q 005248 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAECFDKIRVNPGNFADRRA 197 (706)
Q Consensus 119 atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVA-DIHF~~~~Al~a~~~~~kiRINPGNig~~~k 197 (706)
+-+..-.+-..+|+.+|++.++..- ...|.. ..-.++. ++.-..+.....++..+-+=|||| +++..
T Consensus 39 A~ila~l~~~~~g~~~v~~~~~~~~----~~~i~~------~~pe~~~~~~~~~~~~~~~~~~~~davvig~G-l~~~~- 106 (272)
T TIGR00196 39 APLLAALAALRAGAGLVTVAAPENV----ITLINS------VSPELIVHRLGWKVDEDEELLERYDVVVIGPG-LGQDP- 106 (272)
T ss_pred HHHHHHHHHHHhCCCeEEEEEchhh----HHHHhh------cCCEEEEecchhhHHHHHhhhccCCEEEEcCC-CCCCH-
Confidence 4455555556669999999998721 223433 2111222 221112222233345688889999 66633
Q ss_pred hccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeE
Q 005248 198 QFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (706)
Q Consensus 198 ~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~I 234 (706)
.+..+++.++++++|+
T Consensus 107 ---------------------~~~~l~~~~~~~~~pv 122 (272)
T TIGR00196 107 ---------------------SFKKAVEEVLELDKPV 122 (272)
T ss_pred ---------------------HHHHHHHHHHhcCCCE
Confidence 2566888888888876
No 486
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=31.29 E-value=1.9e+02 Score=30.99 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHH-cCC-eEEEecCCCCCchhHHHhhCCCh----------------------HHHHHHHHHHHHHHHH
Q 005248 216 IEEVFSPLVEKCKK-YGR-AVRIGTNHGSLSDRIMSYYGDSP----------------------RGMVESAFEFARICRK 271 (706)
Q Consensus 216 I~~~f~~vv~~ake-~~~-~IRIGvN~GSL~~~il~rygdt~----------------------eamVeSAle~~~i~e~ 271 (706)
++..|.++++.+++ .|+ .+.|-+| |++-++.+.++-+.. .+-.+..++.++.+.+
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTN-G~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~ 150 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTN-GLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA 150 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeC-chhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH
Q ss_pred CCCCcEEEEE---ecCChhHHHHHHHHHHHh
Q 005248 272 LDFHNFLFSM---KASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 272 ~~f~~iviS~---KaSnv~~~i~ayrlla~~ 299 (706)
.||..+.+.+ |-.|...+.+..+.+.+.
T Consensus 151 ~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 151 AGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred cCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
No 487
>PF13941 MutL: MutL protein
Probab=31.28 E-value=5.4e+02 Score=30.01 Aligned_cols=90 Identities=24% Similarity=0.268 Sum_probs=67.3
Q ss_pred cCCCCceEEEeecCCCCHHHHHhhhcCCCeEEEecCCCCCCCCCcHHHHHHHHHHHHhcCCCCCeEEeecccCCCCcccc
Q 005248 511 LLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDL 590 (706)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~e~l~~lk~~~~vVv~l~~~~~S~k~s~v~~~r~~~~~l~~~~~~~Pli~hlgvTEaG~~~~~ 590 (706)
.+.++.+++-+..+.+++++++.|+..+|-+++|. --.-.-+-....+..+.|++.+.+.|+|+ .|
T Consensus 97 AlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLa---GGtDgG~~~~il~nA~~La~~~~~~pVIy-----------AG 162 (457)
T PF13941_consen 97 ALGAGARVLQVYSYELTEEDLEEIREIRPDIILLA---GGTDGGNKEVILHNAEMLAEANLRIPVIY-----------AG 162 (457)
T ss_pred HhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEe---CCccCCchHHHHHHHHHHHhCCCCCcEEE-----------EC
Confidence 34466688889999999999999999999877764 22222344445666788999899999866 25
Q ss_pred hhhhHHHHHHHhhhcCCceEEEeC
Q 005248 591 VIGAGTNVGALLVDGLGDGLLLEA 614 (706)
Q Consensus 591 ~IkSa~~iG~LL~dGIGDtIrvsl 614 (706)
-..++-.+-.+|.++--+.+.+.+
T Consensus 163 N~~a~~~v~~il~~~~~~~~~~~N 186 (457)
T PF13941_consen 163 NKAAQDEVEEILEKAGKEVVITEN 186 (457)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeCC
Confidence 567777888888878778777764
No 488
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.25 E-value=2.3e+02 Score=31.66 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH--H-----HHHHHHHHHHhhccCCcCcceee--ccC----------------
Q 005248 115 KDVAGTVEEVMRIADQGADLVRITVQGK--R-----EADACFEIKNSLVQKNYNIPLVA--DIH---------------- 169 (706)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvtv~~~--~-----~A~al~~I~~~L~~~g~~iPLVA--DIH---------------- 169 (706)
.+.+.+++-++.|.++|+|++=++..+. . .......||+. .++|+++ .|+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~-----~~~pv~~~G~i~~~~~~~~~~~~~~~~~ 306 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKL-----TGLPTITVGSVGLDGDFIGAFAGDEGAS 306 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHH-----cCCCEEEECCcccccccccccccccccc
Confidence 4667788888899999999998877531 0 12233456664 4466555 554
Q ss_pred -CCHHHHHHHhhh--cCceeeCCCCCCcch
Q 005248 170 -FAPSVALRVAEC--FDKIRVNPGNFADRR 196 (706)
Q Consensus 170 -F~~~~Al~a~~~--~~kiRINPGNig~~~ 196 (706)
.++..|.++++. +|-|-+-=+=+.+++
T Consensus 307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 336 (361)
T cd04747 307 PASLDRLLERLERGEFDLVAVGRALLSDPA 336 (361)
T ss_pred cCCHHHHHHHHHCCCCCeehhhHHHHhCcH
Confidence 478889988873 887766555555544
No 489
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=31.13 E-value=1.5e+02 Score=32.13 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEe-------cCCHH-HHHHHHHHHHhhccCCcCcceeeccCCCHHHHH--HHhhh-cCcee
Q 005248 118 AGTVEEVMRIADQGADLVRIT-------VQGKR-EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL--RVAEC-FDKIR 186 (706)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvt-------v~~~~-~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al--~a~~~-~~kiR 186 (706)
+--++-|.+|.++|-..|--| ||-+. ..+-++.|++- .|+.-|+.. |++.= .|+.+ ++.|-
T Consensus 40 ~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~---~Gv~yPVLt-----PNlkGf~~AvaaGa~Eva 111 (316)
T KOG2368|consen 40 EVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKF---PGVSYPVLT-----PNLKGFEAAVAAGAEEVA 111 (316)
T ss_pred hHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcC---CCccccccC-----cchhhHHHHHhcCceeEE
Confidence 445889999999999999887 56554 45667777752 467777643 44321 22222 55554
Q ss_pred eCCCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEE
Q 005248 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (706)
Q Consensus 187 INPGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IR 235 (706)
| ||.....|..+... --+|.--+||.+++++|+++++++|
T Consensus 112 v----FgaASe~FslkNiN-----ctiees~~rf~~v~kaA~~~ni~vR 151 (316)
T KOG2368|consen 112 V----FGAASEAFSLKNIN-----CTIEESLKRFMEVLKAAQEHNIRVR 151 (316)
T ss_pred e----eehhhhhhhhccCC-----ccHHHHHHHHHHHHHHHHHcCCccc
Confidence 4 33333334432211 1112223478889999999999999
No 490
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=30.97 E-value=2.2e+02 Score=29.83 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=47.3
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cC---CH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQ---GK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt-v~---~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
.|.++.|..+. .|.+.-++-++++.++|++.+++. +- ++ +-.+-++.|++.+.. .++||-.-.|=|+-+|+
T Consensus 129 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~GlA~ 204 (268)
T cd07940 129 DVEFSAEDATR-TDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPN--IKVPISVHCHNDLGLAV 204 (268)
T ss_pred eEEEeeecCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcchHH
Confidence 35566665554 578888888999999999988886 11 22 334445555554211 13888888888888886
No 491
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=30.97 E-value=4.5e+02 Score=24.88 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcC-CC--EEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccC-CCHHHHHHHhhhcCceeeCCCCC
Q 005248 117 VAGTVEEVMRIADQG-AD--LVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAECFDKIRVNPGNF 192 (706)
Q Consensus 117 v~atv~Qi~~L~~aG-ce--iVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~~~~kiRINPGNi 192 (706)
.+.-++++.++.+-. +. ++++..|+- ...+..+|.+.|++ ++.|+||=++ +-...+..-+-++|++=.+|+..
T Consensus 13 ~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg-~~~~~~~i~~~l~~--~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~ 89 (161)
T cd00394 13 ADQLAAQIRFAEADNSVKAIVLEVNTPGG-RVDAGMNIVDALQA--SRKPVIAYVGGQAASAGYYIATAANKIVMAPGTR 89 (161)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEECCCc-CHHHHHHHHHHHHH--hCCCEEEEECChhHHHHHHHHhCCCEEEECCCCE
Confidence 344556666665533 44 456666654 33445566666654 5589999777 54444444444588888899875
Q ss_pred Ccchhhcccccc-c----hHHHHHHHhhHHhhHHHHHHHH
Q 005248 193 ADRRAQFEQLEY-T----DDEYQKELQHIEEVFSPLVEKC 227 (706)
Q Consensus 193 g~~~k~F~~~~Y-t----deeY~~El~~I~~~f~~vv~~a 227 (706)
-.-..-.-...| . .+.+++.++.+.++|...+...
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 129 (161)
T cd00394 90 VGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAEN 129 (161)
T ss_pred EEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221111111112 1 2447788888899888887654
No 492
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=30.92 E-value=9.9e+02 Score=28.60 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcCcceeec---------cCCCHH---
Q 005248 116 DVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVAD---------IHFAPS--- 173 (706)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvt----------v~~~~~A~al~~I~~~L~~~g~~iPLVAD---------IHF~~~--- 173 (706)
.++.-++=+..|.++|.+.+=+. .-+.++.+.++.|++.. -++++.+= -|+...
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~----~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAL----PNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhC----CCCEEEEEEccccccccccCchhhHH
Confidence 34555666677889999988774 23556788888888752 23555432 122222
Q ss_pred -HHHHHhhh-cCceeeC-CCCCCcchhhccccccchHHHHHHHhhHHhhHHHHHHHHHHcCCeEEEecCCCCCchhHHHh
Q 005248 174 -VALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (706)
Q Consensus 174 -~Al~a~~~-~~kiRIN-PGNig~~~k~F~~~~YtdeeY~~El~~I~~~f~~vv~~ake~~~~IRIGvN~GSL~~~il~r 250 (706)
-...|+++ ++-+||- |-|= -+++...++.||++|.-++..+..-- +.
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd------------------------~~n~~~~i~~ak~~G~~v~~~i~~t~-~p----- 144 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALND------------------------PRNLQAAIQAAKKHGAHAQGTISYTT-SP----- 144 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCc------------------------HHHHHHHHHHHHHcCCEEEEEEEecc-CC-----
Confidence 12345555 8888874 2221 02677788999999999887653211 22
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 005248 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (706)
Q Consensus 251 ygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv 286 (706)
| .+++-+ ++.++-+++.|-+ .|++|-+.=
T Consensus 145 ~-~~~~~~----~~~~~~~~~~Gad--~I~i~Dt~G 173 (582)
T TIGR01108 145 V-HTLETY----LDLAEELLEMGVD--SICIKDMAG 173 (582)
T ss_pred C-CCHHHH----HHHHHHHHHcCCC--EEEECCCCC
Confidence 1 244444 4566667788887 467776653
No 493
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=30.90 E-value=1.1e+02 Score=30.72 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcCcceeeccCCCH
Q 005248 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP 172 (706)
Q Consensus 121 v~Qi~~L~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 172 (706)
.+|+.+..++|+|+||+-..+.++.+ ++.+.|+..+-.+-|.+=--+|.
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~~~~~~~---~~v~~l~~~~~~v~ie~SGGI~~ 138 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNMSPEDLK---EAVEELRELNPRVKIEASGGITL 138 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES-CHHHHH---HHHHHHHHHTTTSEEEEESSSST
T ss_pred HHHHHHHHHhCCCEEEecCcCHHHHH---HHHHHHhhcCCcEEEEEECCCCH
Confidence 68999999999999999999985544 44444444445555555444443
No 494
>PRK07475 hypothetical protein; Provisional
Probab=30.85 E-value=2.1e+02 Score=29.88 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=47.4
Q ss_pred cCCeEEEecCCCCCchhHHHhhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHh
Q 005248 230 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (706)
Q Consensus 230 ~~~~IRIGvN~GSL~~~il~rygdt~eamVeSAle~~~i~e~~~f~~iviS~KaSnv~~~i~ayrlla~~ 299 (706)
+.-|+|+-+=.|--.+++.+.-+ +.+++.-.+-++.+++.|-+-|+++| ...-..|+.|++.
T Consensus 38 ~~~pv~~~~v~g~~~~~~~~~~~---~~~~~~l~~aa~~L~~~G~d~I~~~C-----gt~~~~~~~l~~~ 99 (245)
T PRK07475 38 WPFPVRYKVVRGATPERVVEGDD---PSLLDAFVAAARELEAEGVRAITTSC-----GFLALFQRELAAA 99 (245)
T ss_pred CCcCEEEEeeCCCCHHHHhcCCC---ccHHHHHHHHHHHHHHcCCCEEEech-----HHHHHHHHHHHHH
Confidence 45799999888888888887643 34677777788899999999999999 2344466677666
No 495
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.59 E-value=2e+02 Score=30.57 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=62.2
Q ss_pred cCCCCceEEE-eccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCH---------------HHHHHHHHHHHhhccCC
Q 005248 98 IGSEHPIRVQ-TMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGK---------------READACFEIKNSLVQKN 159 (706)
Q Consensus 98 IGG~~PI~VQ-SMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvtv~~~---------------~~A~al~~I~~~L~~~g 159 (706)
+|.+-||.|= |... .+..+.+.+++-+++|+++|.+++=|+..+. ...+.++.|++.
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~----- 279 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA----- 279 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-----
Confidence 4556676652 1111 1224677888889999999999997654332 223556667775
Q ss_pred cCcceeeccCCC-HHHHHHHhhh--cCceeeCCCCCCcch
Q 005248 160 YNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRR 196 (706)
Q Consensus 160 ~~iPLVADIHF~-~~~Al~a~~~--~~kiRINPGNig~~~ 196 (706)
+++|+++.--+. +.-|.++++. +|-|=+-=+-+.+++
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~ 319 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPD 319 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCcc
Confidence 579999987765 8888888774 777776655565543
No 496
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.59 E-value=20 Score=34.97 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=12.3
Q ss_pred ccCCCCcccccHHH
Q 005248 644 SCPSCGRTLFDLQE 657 (706)
Q Consensus 644 SCPsCGRTlfDLq~ 657 (706)
.||+||...|||..
T Consensus 11 ~Cp~cg~kFYDLnk 24 (129)
T TIGR02300 11 ICPNTGSKFYDLNR 24 (129)
T ss_pred cCCCcCccccccCC
Confidence 69999999999954
No 497
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=30.53 E-value=1.7e+02 Score=31.51 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcCcceeeccCC--CHHHHHHHhhhcCc
Q 005248 117 VAGTVEEVMRIADQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (706)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvtv~--~-~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~Al~a~~~~~k 184 (706)
.+..++++.++.+.|...+.+-+- + .++.+.+..|++. .|-++.|..|.|- ++.-|+..++.++.
T Consensus 119 ~~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~~---~g~~~~l~vDaN~~w~~~~A~~~~~~l~~ 188 (320)
T PRK02714 119 GEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLER---LPAGAKLRLDANGGLSLEEAKRWLQLCDR 188 (320)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHh---cCCCCEEEEECCCCCCHHHHHHHHHHHhh
Confidence 367889999999999999988773 2 3578888888885 3567999999985 45555566565554
No 498
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.47 E-value=2.8e+02 Score=28.95 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=46.9
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcCcceeeccCCCHHHHH
Q 005248 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (706)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvt----v~~~-~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (706)
.|++..|..+. .|.+.-++.++++.++|++.|++. +-.+ +-++-+..+++. +++||-.-.|-|.-+|+
T Consensus 125 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~l~~H~Hn~~Gla~ 197 (259)
T cd07939 125 FVSVGAEDASR-ADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA-----TDLPLEFHAHNDLGLAT 197 (259)
T ss_pred eEEEeeccCCC-CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCChHH
Confidence 34555554444 578999999999999999988876 1122 344455556653 56888777777777776
No 499
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=30.45 E-value=36 Score=31.34 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=22.1
Q ss_pred CceEeccCCCCcccccHHHHHHHHHHHh
Q 005248 639 KTEYVSCPSCGRTLFDLQEISAEIREKT 666 (706)
Q Consensus 639 kte~ISCPsCGRTlfDLq~~~a~Ik~~t 666 (706)
.+--++||.||-..+| .+++++|++.+
T Consensus 32 nVPa~~C~~CGe~y~~-dev~~eIE~~l 58 (89)
T TIGR03829 32 ETPSISCSHCGMEYQD-DTTVKEIEDQL 58 (89)
T ss_pred cCCcccccCCCcEeec-HHHHHHHHhhh
Confidence 3456799999999888 56789999876
No 500
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=30.23 E-value=1.4e+02 Score=31.99 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=43.7
Q ss_pred CceEEEec--cCCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH-HHHhhccCCcCcceeeccCCCHHHH
Q 005248 102 HPIRVQTM--TTND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFE-IKNSLVQKNYNIPLVADIHFAPSVA 175 (706)
Q Consensus 102 ~PI~VQSM--t~t~--T~Dv~atv~Qi~~L~~aGceiVRvtv~~~~~A~al~~-I~~~L~~~g~~iPLVADIHF~~~~A 175 (706)
.++++=+- +-|. |..+.+-.+...++.+.||+++-|++.+..+-++..+ .+++--..+++.|+++|-+ ..+|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~ia 175 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVS 175 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC--hHHH
Confidence 45555533 3333 3444455556667788999999999988755444432 1221112367899999964 4444
Done!