Query 005249
Match_columns 706
No_of_seqs 267 out of 2001
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 19:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.7E-45 2.6E-49 397.0 39.3 418 4-704 10-487 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.7E-31 5.8E-36 286.8 23.2 182 4-188 26-212 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.8E-29 2E-33 266.6 39.9 176 3-178 23-225 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 7.7E-26 2.6E-30 247.3 31.9 171 10-182 17-196 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1E-25 3.6E-30 237.7 22.7 177 8-186 2-178 (375)
6 2xut_A Proton/peptide symporte 99.9 4.8E-22 1.6E-26 219.4 25.2 166 12-179 18-195 (524)
7 2cfq_A Lactose permease; trans 99.9 4.4E-23 1.5E-27 223.5 13.2 129 550-688 279-408 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 3.9E-11 1.3E-15 128.4 21.4 171 10-182 256-433 (451)
9 4gc0_A D-xylose-proton symport 99.3 1.6E-10 5.4E-15 125.8 22.6 182 11-198 282-472 (491)
10 2cfq_A Lactose permease; trans 99.2 1.1E-10 3.8E-15 126.1 15.5 146 40-187 258-404 (417)
11 3o7q_A L-fucose-proton symport 99.2 1.4E-09 4.8E-14 116.1 20.7 154 16-174 268-424 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.0 8.1E-10 2.8E-14 120.4 10.2 158 26-186 303-475 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.1E-09 3.7E-14 115.2 7.3 127 550-686 55-181 (375)
14 2xut_A Proton/peptide symporte 98.8 4.4E-08 1.5E-12 107.7 14.2 122 550-681 74-200 (524)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.7e-45 Score=397.03 Aligned_cols=418 Identities=30% Similarity=0.543 Sum_probs=330.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH
Q 005249 4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNL--------GTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI 75 (706)
Q Consensus 4 ~~liliil~L~~fl~gl~~~iis~~lp~I~q~fGL--------S~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLl 75 (706)
.+.+.++++++.++.++|..+++..+|.+.++++. +..+.+++.+++.+|+++|++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 35566677889999999999999999999998853 2357889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHH
Q 005249 76 LSSVLYFVSGLVML------------------WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQF 137 (706)
Q Consensus 76 ig~iL~aIgsll~a------------------~a~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~a 137 (706)
++.+++.+++++++ +++++++++++|+++|++.|+..+...++++|+.|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh------ccchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhcccchHHHHHHHHHhhcccc
Q 005249 138 TGSGGMFLAYCMVFGMSLL------ASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGRED 211 (706)
Q Consensus 138 g~~LG~alg~ll~~~l~l~------~~~GWR~~FlI~ail~LV~~ll~~lflpEsp~~l~~k~~~~~~~~~~~~~~~~~~ 211 (706)
+..+|.++++......... ....||+.+.+..++.++. ++..+++||+|||+..+++.+++++.+++....++
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 9999999987666555432 2346888887777766664 45568899999999999999999888877654332
Q ss_pred chHHHHHHHHhhccCCCcchhhhhcCCCCCCCCCCCCchhhhhhhhcCCCCCcccccccccccchhhhHhhhccccCCCC
Q 005249 212 VSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSV 291 (706)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (706)
...+.... .+.
T Consensus 249 ~~~~~~~~--------------------------------~~~------------------------------------- 259 (491)
T 4gc0_A 249 ATQAVQEI--------------------------------KHS------------------------------------- 259 (491)
T ss_dssp HHHHHHHH--------------------------------HHH-------------------------------------
T ss_pred hHHHHHHH--------------------------------HHH-------------------------------------
Confidence 11110000 000
Q ss_pred CCCCccccccccccccCCCCCCCCccccCCCCCCccccccccccCCcchhhhhhccCCccccccCCCCCCCCCCcccccc
Q 005249 292 PLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQ 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (706)
.+++
T Consensus 260 ----------------------------------------------~~~~------------------------------ 263 (491)
T 4gc0_A 260 ----------------------------------------------LDHG------------------------------ 263 (491)
T ss_dssp ----------------------------------------------HHHH------------------------------
T ss_pred ----------------------------------------------HHhh------------------------------
Confidence 0000
Q ss_pred ccccccccCCCCCCCcccccccccccccCCCccccccccCCCcccccchhhcccCCCcccCCccceeecccCCCCCCCCc
Q 005249 372 TTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGS 451 (706)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (706)
T Consensus 264 -------------------------------------------------------------------------------- 263 (491)
T 4gc0_A 264 -------------------------------------------------------------------------------- 263 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCccchHHHHHHHhhchhhhhhhhhccCCCCCCcCCCCccccCCCchHHHHhhhhhhHHHHHHHHHHHHhhh
Q 005249 452 LVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFS 531 (706)
Q Consensus 452 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (706)
+ +..... .....+++.+++....++++.
T Consensus 264 -----------------------------~--------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4gc0_A 264 -----------------------------R--------------------KTGGRL---LMFGVGVIVIGVMLSIFQQFV 291 (491)
T ss_dssp -----------------------------H--------------------HHTTHH---HHSCCTHHHHHHHHHHHHHHT
T ss_pred -----------------------------h--------------------hhhhHH---HHhcccHHHHHHHHHHHHHHh
Confidence 0 000000 111244567778888888999
Q ss_pred hhhhhHhcHHHHHHhhhh----------------------HHHHHhhhcchHHHHhHHHHHHHHHHHHHHHhhhhhhhhh
Q 005249 532 GINGVLYYTPQILEQAGV----------------------AMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPV 589 (706)
Q Consensus 532 g~~~~~~~~~~~~~~~g~----------------------~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (706)
+++.+.+|.|.+++..+. +++++||+|||+.++.+..++.++++.+.......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----- 366 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----- 366 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-----
Confidence 999999999998876543 88999999999999999888888887776544332
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHhHHHHHHHh------hchhhHHH
Q 005249 590 LKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS------IGLAGAFG 663 (706)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~g~~~~~~ 663 (706)
......+.+++++..+|..+++++.+++++|++|++.|+++.|++++++++++++++.++|.+.+. .++..+|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~ 446 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 123445666777788888889999999999999999999999999999999999999999887543 46667899
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHcCcccccc
Q 005249 664 VYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATK 704 (706)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~~~ 704 (706)
+++++++++.+++++++|||||+++||||+.|+++.+++.+
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~ 487 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQ 487 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--------
T ss_pred HHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccccc
Confidence 99999999999999999999999999999999877665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.98 E-value=1.7e-31 Score=286.82 Aligned_cols=182 Identities=16% Similarity=0.101 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q 005249 4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV 83 (706)
Q Consensus 4 ~~liliil~L~~fl~gl~~~iis~~lp~I~q~fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~aI 83 (706)
.+..+..++++.++.+++...+++.+|.+.+++ ++..+.+++.+++.+++.++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 466778888889999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005249 84 SGLVMLW----SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP 159 (706)
Q Consensus 84 gsll~a~----a~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~ 159 (706)
+.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+..... ...
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--~~~ 182 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--AWF 182 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--HHT
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 9999999 9999999999999999999999999999999999999999999999999999999966654432 445
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHhhccCCch
Q 005249 160 S-WRLMLGVLSIPALLYFAFAVFFLPESPR 188 (706)
Q Consensus 160 G-WR~~FlI~ail~LV~~ll~~lflpEsp~ 188 (706)
+ ||+.|++.++++++..++.++++||+|+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 7 9999999999888877777788888864
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=5.8e-29 Score=266.57 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=156.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q 005249 3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF 82 (706)
Q Consensus 3 r~~liliil~L~~fl~gl~~~iis~~lp~I~q~fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~a 82 (706)
+.+..+..+++..++.+++...+++.+|.+.+++|++..+.+++.+++.++++++++++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 44566777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005249 83 VSGLVM---LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP 159 (706)
Q Consensus 83 Igsll~---a~a~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~ 159 (706)
++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+..........
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 88899999999999999999999999999999999999999999999999999999997665544312221
Q ss_pred h------------------------hhHHHHHHHHHHHHHHHH
Q 005249 160 S------------------------WRLMLGVLSIPALLYFAF 178 (706)
Q Consensus 160 G------------------------WR~~FlI~ail~LV~~ll 178 (706)
. ||+.|++.+++.++..++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 999998887776665544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=7.7e-26 Score=247.25 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHH
Q 005249 10 AATIGNFLQGWDNATIAGAI-VYIKKD-----LNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYF 82 (706)
Q Consensus 10 il~L~~fl~gl~~~iis~~l-p~I~q~-----fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR-~GRRrvLlig~iL~a 82 (706)
.+++..++..+....+.+.+ +++.++ +|++..+.+++.+++.++++++++++|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 33444444444444443333 445555 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcch--hhHHhHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 005249 83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS 160 (706)
Q Consensus 83 Igsll~a~a~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~--Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~G 160 (706)
++.++++++++++.++++|++.|++.+...+...++++|++|+++ |+.++++++.+.++|.++++.+.... ....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~g 174 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA--QEAAG 174 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH--Hhhhh
Confidence 999999999999999999999999999999999999999999988 77888889999999999996655443 44569
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 005249 161 WRLMLGVLSIPALLYFAFAVFF 182 (706)
Q Consensus 161 WR~~FlI~ail~LV~~ll~~lf 182 (706)
||+.|++.++..++.+++.++.
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887777665554444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1e-25 Score=237.70 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q 005249 8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV 87 (706)
Q Consensus 8 liil~L~~fl~gl~~~iis~~lp~I~q~fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~aIgsll 87 (706)
++.++++.++.+++...+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 34567777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 005249 88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV 167 (706)
Q Consensus 88 ~a~a~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~GWR~~FlI 167 (706)
++++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+.. ...+..+||+.|++
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG--LLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999955543 33455699999998
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 005249 168 LSIPALLYFAFAVFFLPES 186 (706)
Q Consensus 168 ~ail~LV~~ll~~lflpEs 186 (706)
.+++.++..++..+++||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHCccc
Confidence 8888777665455566665
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=4.8e-22 Score=219.39 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHHHH
Q 005249 12 TIGNFLQGWDNATIAGAIV-YIKKDLN------LGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFV 83 (706)
Q Consensus 12 ~L~~fl~gl~~~iis~~lp-~I~q~fG------LS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~-GRRrvLlig~iL~aI 83 (706)
++..++..+....+.+.++ ++.+++| ++..+.+++.+++.+++.++.+++|+++||+ |||+++.++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444444444444444444 5677899 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHH---HHHHHHHHHHHHHHHHHHHHHhccc
Q 005249 84 SGLVMLWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL---PQFTGSGGMFLAYCMVFGMSLLASP 159 (706)
Q Consensus 84 gsll~a~a~-s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi---~~ag~~LG~alg~ll~~~l~l~~~~ 159 (706)
+.+++++++ +++.++++|++.|++.+...+...+++.|++|+++|+++.++ .+.+.++|.++++.+.... ....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~ 175 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL--LKNF 175 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH--HHTS
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc
Confidence 999999998 999999999999999999999999999999999999877666 8889999999986554433 3456
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 005249 160 SWRLMLGVLSIPALLYFAFA 179 (706)
Q Consensus 160 GWR~~FlI~ail~LV~~ll~ 179 (706)
+||+.|++.+++.++.+++.
T Consensus 176 g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=4.4e-23 Score=223.49 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=94.0
Q ss_pred HHHHHhhhcchHHHHhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccchhhhhcccCCcchhhh
Q 005249 550 AMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGI 629 (706)
Q Consensus 550 ~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 629 (706)
.++++||+|||+++..+..+.++..+.+..... .+..++..+++..++. ...+..+.+++|.+|++.|++
T Consensus 279 ~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T 2cfq_A 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFATS---------ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---------HHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHH
Confidence 889999999999988777666665544432110 1111122222222221 122334678999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcccCCCCCCh
Q 005249 630 CIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 688 (706)
Q Consensus 630 ~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 688 (706)
+.+++ +...+++++++|.+.|.+.+..|+...|.+.+++++++.++.++..||++..++
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 99995 888899999999999999998898889999999999998888888888776554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=3.9e-11 Score=128.42 Aligned_cols=171 Identities=18% Similarity=0.070 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHHHHHHHHHH-HHH
Q 005249 10 AATIGNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPMLILSSVLYF-VSG 85 (706)
Q Consensus 10 il~L~~fl~gl~~~iis~~lp~I~q~-fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~--GRRrvLlig~iL~a-Igs 85 (706)
.+.+..++.......+....|.+.++ +|++..+.+++.+...++.+++.+++|++.||+ |||+.+.++.++.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 34444455555555566677777766 899999999999999999999999999999999 99999988877766 666
Q ss_pred HHHHhh--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHH-HHHHHHHHHHHHHHhccchhh
Q 005249 86 LVMLWS--PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASPSWR 162 (706)
Q Consensus 86 ll~a~a--~s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~L-G~alg~ll~~~l~l~~~~GWR 162 (706)
++..+. .+.+.++++.++.|++.+...+....++.|.+|+++|++++|+.+....+ |.++++.+... ..+..||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~--l~~~~g~~ 413 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY--TVDFFGWD 413 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCSH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCcH
Confidence 666665 37788888899999999999898899999999999999999999999999 99999655443 34556899
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 005249 163 LMLGVLSIPALLYFAFAVFF 182 (706)
Q Consensus 163 ~~FlI~ail~LV~~ll~~lf 182 (706)
..|++.+++.++..++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888887766554443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.30 E-value=1.6e-10 Score=125.76 Aligned_cols=182 Identities=18% Similarity=0.100 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q 005249 11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW 90 (706)
Q Consensus 11 l~L~~fl~gl~~~iis~~lp~I~q~fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~aIgsll~a~ 90 (706)
.....+........+....+.+.+..+.+............+...++.++++++.||+|||+.++.+..+.+++.++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33344444444555566778889999999888888888888999999999999999999999999988888887766654
Q ss_pred h----hhHHHHHHHHHHHHHHH-HhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHH----Hhccchh
Q 005249 91 S----PNVYVLCIARLLDGFGV-GLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS----LLASPSW 161 (706)
Q Consensus 91 a----~s~~lLli~R~L~GIg~-G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~----l~~~~GW 161 (706)
. ...+..+++.++...+. ....+..+.+.+|.+|.+.|++++|+......+|.++++....... .....++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~ 441 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN 441 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2 12222222222222222 2234667789999999999999999999999999888755443321 1223356
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCchhhhcccchHH
Q 005249 162 RLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLE 198 (706)
Q Consensus 162 R~~FlI~ail~LV~~ll~~lflpEsp~~l~~k~~~~~ 198 (706)
...|++.++++++.+++.++++||+ +++..|
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PET------kg~tLe 472 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPET------KGKTLE 472 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCC------TTCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHheecCC------CCCCHH
Confidence 6788899999999888889999999 666554
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=1.1e-10 Score=126.11 Aligned_cols=146 Identities=19% Similarity=0.177 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005249 40 TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYI 119 (706)
Q Consensus 40 ~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~aIgsll~a~a~s~~lLli~R~L~GIg~G~~~~~~~a~I 119 (706)
....+++.++..++.+++.++.|+++||+|||+++.++.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888999999999999999999999999988888888888888888888888888888887777888999
Q ss_pred HhcCCcchhhHHhHH-HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhhccCCc
Q 005249 120 SETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESP 187 (706)
Q Consensus 120 sE~fP~k~Rg~a~Gi-~~ag~~LG~alg~ll~~~l~l~~~~GWR~~FlI~ail~LV~~ll~~lflpEsp 187 (706)
.|.+|++.|+++.++ ++.+..+|.++++.+.... .+..|+...|.+.++++++.+++.+++.+|.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l--~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM--YESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH--HHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 4778889998886665433 33457888998888888887766666667653
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.16 E-value=1.4e-09 Score=116.08 Aligned_cols=154 Identities=4% Similarity=-0.139 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhhhh
Q 005249 16 FLQGWDNATIAGAIVYI-KKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPN 93 (706)
Q Consensus 16 fl~gl~~~iis~~lp~I-~q~-fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLlig~iL~aIgsll~a~a~s 93 (706)
++.......+....|.+ .++ +|.+..+.+++.+++.++.+++.+++|+++||+|||+++.++.++.+++.++..+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 33334344444555555 555 5999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHH
Q 005249 94 VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGVLSIPA 172 (706)
Q Consensus 94 ~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~G-WR~~FlI~ail~ 172 (706)
.+.++. -++.|++.+...+...++..|.+|++ ++.+.++.. ...+|.++++.+.... .+..| ++..|++.++..
T Consensus 348 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l--~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 348 HVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFV--SDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHH--HHHHTSSGGGGHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHH
Confidence 766544 48889999999999999999999976 888888877 5568888885554433 34446 888887765554
Q ss_pred HH
Q 005249 173 LL 174 (706)
Q Consensus 173 LV 174 (706)
++
T Consensus 423 ~~ 424 (438)
T 3o7q_A 423 AV 424 (438)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.99 E-value=8.1e-10 Score=120.37 Aligned_cols=158 Identities=11% Similarity=-0.029 Sum_probs=119.7
Q ss_pred HHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH-----HHHHHHHHHHHHHHhhh-------
Q 005249 26 AGAIVYIK-KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-----LSSVLYFVSGLVMLWSP------- 92 (706)
Q Consensus 26 s~~lp~I~-q~fGLS~s~igLl~S~~~Ig~~Igsl~~G~LaDR~GRRrvLl-----ig~iL~aIgsll~a~a~------- 92 (706)
...++.+. +.++.+....+++.+...++..++.++.+++.||+|||+... ++.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33445444 446777677788888899999999999999999999986654 67777777766666543
Q ss_pred --hHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 005249 93 --NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI 170 (706)
Q Consensus 93 --s~~lLli~R~L~GIg~G~~~~~~~a~IsE~fP~k~Rg~a~Gi~~ag~~LG~alg~ll~~~l~l~~~~GWR~~FlI~ai 170 (706)
+.+.++++.++.|++.+...+....++.|.+|++.|++++|+.+....+|.++++.+... ..+.++...|.+.++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~---~~~~~~~~~~~~~~~ 459 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL---YNAKSEVAYFSYFGL 459 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG---GGGSSTTHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHH
Confidence 677788889999999999899999999999999999999999999999999998554322 234467778888888
Q ss_pred HHHHHHHHHHhhccCC
Q 005249 171 PALLYFAFAVFFLPES 186 (706)
Q Consensus 171 l~LV~~ll~~lflpEs 186 (706)
++++..++.+++.++.
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 460 GSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776666666654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=1.1e-09 Score=115.15 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=100.0
Q ss_pred HHHHHhhhcchHHHHhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccchhhhhcccCCcchhhh
Q 005249 550 AMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGI 629 (706)
Q Consensus 550 ~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 629 (706)
.|+++||+|||+.++.+..+..++.+++....... ..+.+.++...+ .....+....++.|.+|++.|++
T Consensus 55 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 55 YGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT---------VLIAASAMQGMG-TGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHHHH-HHhhhhhHHHHHHHHCCHHHHHH
Confidence 89999999999999999888888887776643222 222222222222 22345667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 005249 630 CIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGM 686 (706)
Q Consensus 630 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 686 (706)
+.++.+....++.++++.+.+.+.+..||+..|.+.++++++..++.++++||++..
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999999998888999999999988888887777788887643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.77 E-value=4.4e-08 Score=107.73 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=91.1
Q ss_pred HHHHHhhh-cchHHHHhHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHhhcccccchhhhhcccCCcchh
Q 005249 550 AMKLMDVA-GRRKLLLTTIPVLIVSLIILVISE-TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVR 627 (706)
Q Consensus 550 ~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 627 (706)
.|+++||+ |||++++.+..+.+++.+++.... .. +..++..++..++ .....+....+++|.+|++.|
T Consensus 74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r 143 (524)
T 2xut_A 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV---------QGFYTGLFLIALG-SGGIKPLVSSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH---------HHHHHHHHHHHHH-HHTTHHHHHHHHHHTCSTTTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHh-ccccchhHHHHHHHHcCccch
Confidence 89999999 999999998888888777766543 11 1222222222222 223456777899999999999
Q ss_pred hhHHHH---HHHHHHHHHHHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccc
Q 005249 628 GICIAI---CAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 681 (706)
Q Consensus 628 ~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 681 (706)
+.+.++ .+....+|.++++.+.+.+.+..||+.+|.+.+++++++.++.++..|
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 876666 889999999999999999999999999999888887777666554333
Done!