BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005250
         (706 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
           With Adp And Mg
 pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
          Length = 337

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 105/283 (37%), Gaps = 55/283 (19%)

Query: 386 QYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHG 445
            Y  ++  GGDGT+  V+N I ++   + P + V+P GT ND  R L             
Sbjct: 80  NYDVLIAAGGDGTLNEVVNGIAEK--PNRPKLGVIPXGTVNDFGRALH------------ 125

Query: 446 GLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGCDAKVAYEFHVT 505
               I NDI  A         V I   +++ D  K  +++ +N    G   +V+Y     
Sbjct: 126 ----IPNDIXGA-------LDVIIEGHSTKVDIGKXNNRYFINLAAGGQLTQVSY----- 169

Query: 506 RQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN 565
             E P K  S  V    Y  +G   +      +L     +E DG    + +    L  L 
Sbjct: 170 --ETPSKLKS-IVGPFAYYIKGFEXLPQXKAVDL----RIEYDGN---VFQGEALLFFLG 219

Query: 566 IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKV 625
           + +   G +    D++ DD +         L +V       LG +    S+       KV
Sbjct: 220 LTNSXAGFEKLVPDAKLDDGYF-------TLIIVEKSNLAELGHIXTLASRGEHTKHPKV 272

Query: 626 -------IRIHSSSPFPVQIDGEPFIQ-QAGCLDITHHGQVFT 660
                  I I S +   + +DGE   +  A  L++  H  VF 
Sbjct: 273 IYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFA 315


>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
          Length = 306

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 40/195 (20%)

Query: 390 VLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLST 449
           ++V GGDGTV    N +     E  P +A++P GT ND SR L                 
Sbjct: 71  IIVFGGDGTVFECTNGLAP--LEIRPTLAIIPGGTCNDFSRTLG---------------- 112

Query: 450 ILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGCDAKVAYEFHVTRQEN 509
           +  +I  AA       K+  +E     D  K   +  LN+ GIG  ++V+       +  
Sbjct: 113 VPQNIAEAA-------KLITKEHVKPVDVAKANGQHFLNFWGIGLVSEVSNNIDAEEKAK 165

Query: 510 PQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569
                   + K+ Y     R +  +     P  V +  DG   ++ +D   L+ +  G Y
Sbjct: 166 --------LGKIGYYLSTIRTV--KNAETFP--VKITYDG---QVYEDEAVLVXVGNGEY 210

Query: 570 MGGVDLWQNDSEHDD 584
           +GG+  +  + + DD
Sbjct: 211 LGGIPSFIPNVKCDD 225


>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
          Length = 304

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 40/195 (20%)

Query: 390 VLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLST 449
           ++V GGDGTV    N +     E  P +A++P GT ND SR L                 
Sbjct: 67  IIVFGGDGTVFECTNGLAP--LEIRPTLAIIPGGTCNDFSRTLG---------------- 108

Query: 450 ILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGCDAKVAYEFHVTRQEN 509
           +  +I  AA       K+  +E     D  K   +  LN+ GIG  ++V+       +  
Sbjct: 109 VPQNIAEAA-------KLITKEHVKPVDVAKANGQHFLNFWGIGLVSEVSNNIDAEEKAK 161

Query: 510 PQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569
                   + K+ Y     R +  +     P  V +  DG   ++ +D   L+ +  G Y
Sbjct: 162 --------LGKIGYYLSTIRTV--KNAETFP--VKITYDG---QVYEDEAVLVXVGNGEY 206

Query: 570 MGGVDLWQNDSEHDD 584
           +GG+  +  + + DD
Sbjct: 207 LGGIPSFIPNVKCDD 221


>pdb|1R79|A Chain A, Solution Structure Of The C1 Domain Of The Human
           Diacylglycerol Kinase Delta
          Length = 84

 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)

Query: 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCG-VPFINDCPTWHCLWCQRRIHVKC-HAIMS 194
           + H W      ++ N  +SA C  CD+ CG V  + D   W CLWC+  +H  C  ++++
Sbjct: 26  MPHQW------LEGNLPVSAKCTVCDKTCGSVLRLQD---WRCLWCKAMVHTSCKESLLT 76

Query: 195 KESG 198
           K SG
Sbjct: 77  KCSG 80


>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
 pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
          Length = 332

 Score = 35.4 bits (80), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 385 FQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429
           F    V+  GGDGT+  V  A+ +   +  P + +LPLGT ND +
Sbjct: 81  FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFA 125


>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
          Length = 299

 Score = 35.4 bits (80), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 385 FQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429
           F    V+  GGDGT+  V  A+ +   +  P + +LPLGT ND +
Sbjct: 56  FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFA 100


>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases.
 pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
           Putative Lipid Kinase Homologous To Eukaryotic
           Sphingosine And Diacylglycerol Kinases
          Length = 299

 Score = 32.3 bits (72), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 390 VLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429
           V+  GGDGT+  V  A+ +      P + +LPLGT ND +
Sbjct: 61  VIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFA 100


>pdb|2P4E|P Chain P, Crystal Structure Of Pcsk9
 pdb|2P4E|A Chain A, Crystal Structure Of Pcsk9
          Length = 692

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 236 GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 293

Query: 429 SRVL 432
           SRVL
Sbjct: 294 SRVL 297


>pdb|3BPS|A Chain A, Pcsk9:egf-a Complex
 pdb|3GCW|A Chain A, Pcsk9:egfa(H306y)
 pdb|3GCX|A Chain A, Pcsk9:egfa (Ph 7.4)
 pdb|3SQO|A Chain A, Pcsk9 J16 Fab Complex
          Length = 540

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2QTW|B Chain B, The Crystal Structure Of Pcsk9 At 1.9 Angstroms Resolution
           Reveals Structural Homology To Resistin Within The
           C-Terminal Domain
          Length = 546

 Score = 31.6 bits (70), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|3M0C|B Chain B, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
           Ldl Receptor
          Length = 546

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|3H42|B Chain B, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
           Competitive Antibody
          Length = 540

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|3P5B|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
           RECEPTOR IN AN Extended Conformation
 pdb|3P5C|A Chain A, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
           RECEPTOR IN AN Extended Conformation
          Length = 540

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2PMW|B Chain B, The Crystal Structure Of Proprotein Convertase Subtilisin
           Kexin Type 9 (Pcsk9)
          Length = 540

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2W2Q|A Chain A, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
          Length = 312

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2W2M|A Chain A, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
 pdb|2W2N|A Chain A, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
          Length = 312

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2W2P|A Chain A, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
          Length = 312

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2W2O|A Chain A, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
          Length = 312

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2XTJ|A Chain A, The Crystal Structure Of Pcsk9 In Complex With 1d05 Fab
          Length = 312

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE---KRNFESP--PPVAVLPLGTGNDM 428
           G + G+   ++ +  RVL C G GTV+  L  +E   K     P  P V +LPL  G   
Sbjct: 84  GRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--Y 141

Query: 429 SRVL 432
           SRVL
Sbjct: 142 SRVL 145


>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
 pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
          Length = 800

 Score = 29.3 bits (64), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 548 DGKGIEIPKDSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHL 607
           +G+G E+P + E L  +  G Y+  V+ WQ   E  D F  + + D+V E + +  ++  
Sbjct: 588 NGEG-ELPDEVEYLSGILTGEYV--VNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYKA 644

Query: 608 GKLQVGLSQAR 618
           GK++ GL   R
Sbjct: 645 GKIE-GLHPGR 654


>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
          Length = 795

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 548 DGKGIEIPKDSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHL 607
           +G+G E+P + E L  +  G Y+  V+ WQ   E  D F  + + D+V E + +  ++  
Sbjct: 584 NGEG-ELPDEVEYLSGILTGEYV--VNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYKA 640

Query: 608 GKLQVGLSQAR 618
           GK++ GL   R
Sbjct: 641 GKIE-GLHPGR 650


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,374,277
Number of Sequences: 62578
Number of extensions: 916319
Number of successful extensions: 2010
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 22
length of query: 706
length of database: 14,973,337
effective HSP length: 106
effective length of query: 600
effective length of database: 8,340,069
effective search space: 5004041400
effective search space used: 5004041400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)