Query 005250
Match_columns 706
No_of_seqs 329 out of 1617
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0782 Predicted diacylglycer 100.0 4E-102 8E-107 827.9 17.9 503 67-665 167-698 (1004)
2 KOG1169 Diacylglycerol kinase 100.0 3.1E-98 7E-103 829.7 24.6 597 32-675 4-631 (634)
3 KOG1170 Diacylglycerol kinase 100.0 2.8E-78 6E-83 666.2 12.8 444 106-664 64-793 (1099)
4 PRK13057 putative lipid kinase 100.0 6.4E-42 1.4E-46 363.2 31.0 273 338-663 1-285 (287)
5 PRK11914 diacylglycerol kinase 100.0 3.3E-41 7.2E-46 360.8 31.6 284 334-664 8-305 (306)
6 PRK13337 putative lipid kinase 100.0 7E-41 1.5E-45 358.0 30.4 285 334-667 1-298 (304)
7 PRK13059 putative lipid kinase 100.0 2.9E-40 6.3E-45 351.7 31.9 279 334-663 1-293 (295)
8 PRK13054 lipid kinase; Reviewe 100.0 3E-40 6.5E-45 352.5 31.8 282 334-665 3-296 (300)
9 PRK13055 putative lipid kinase 100.0 5.8E-40 1.3E-44 355.1 32.3 286 334-666 2-304 (334)
10 TIGR03702 lip_kinase_YegS lipi 100.0 5.1E-40 1.1E-44 349.6 30.9 280 336-664 1-289 (293)
11 PRK00861 putative lipid kinase 100.0 6.9E-40 1.5E-44 349.7 31.9 281 334-665 2-299 (300)
12 TIGR00147 lipid kinase, YegS/R 100.0 1.2E-39 2.6E-44 346.6 30.0 279 334-661 1-293 (293)
13 COG1597 LCB5 Sphingosine kinas 100.0 1.2E-37 2.6E-42 331.6 29.2 284 334-666 2-299 (301)
14 PRK12361 hypothetical protein; 100.0 3.4E-37 7.3E-42 354.3 31.6 286 334-665 242-544 (547)
15 PLN02958 diacylglycerol kinase 100.0 1.6E-36 3.4E-41 341.5 29.3 285 333-661 110-464 (481)
16 PF00609 DAGK_acc: Diacylglyce 100.0 2.7E-36 5.8E-41 293.5 13.5 158 485-642 1-161 (161)
17 PLN02204 diacylglycerol kinase 100.0 7.8E-33 1.7E-37 310.6 32.7 309 333-665 158-600 (601)
18 KOG1116 Sphingosine kinase, in 99.9 2.9E-25 6.2E-30 245.0 24.0 292 333-663 178-567 (579)
19 smart00045 DAGKa Diacylglycero 99.9 1.4E-23 3.1E-28 204.0 9.7 158 485-642 1-160 (160)
20 smart00046 DAGKc Diacylglycero 99.9 3.3E-21 7.2E-26 179.6 13.2 100 338-438 1-102 (124)
21 KOG0696 Serine/threonine prote 99.8 3.9E-22 8.5E-27 210.6 2.8 124 57-196 33-159 (683)
22 PF00781 DAGK_cat: Diacylglyce 99.8 6E-20 1.3E-24 172.3 11.8 99 336-436 1-104 (130)
23 KOG1115 Ceramide kinase [Lipid 99.8 9.3E-19 2E-23 184.2 13.7 291 332-662 156-508 (516)
24 KOG1169 Diacylglycerol kinase 99.5 1.3E-14 2.8E-19 163.2 3.5 136 68-220 97-235 (634)
25 KOG4236 Serine/threonine prote 99.5 4E-15 8.7E-20 161.8 -2.0 117 64-196 140-316 (888)
26 KOG0694 Serine/threonine prote 99.5 1.9E-14 4E-19 162.0 2.2 121 60-196 149-279 (694)
27 KOG4435 Predicted lipid kinase 99.0 2.7E-09 5.8E-14 113.3 11.3 167 322-500 46-221 (535)
28 PF00130 C1_1: Phorbol esters/ 98.8 4.3E-09 9.4E-14 83.1 2.7 52 70-128 1-52 (53)
29 PRK03708 ppnK inorganic polyph 98.6 2.4E-06 5.3E-11 90.5 19.7 246 336-663 2-262 (277)
30 PF00130 C1_1: Phorbol esters/ 98.6 2.6E-08 5.6E-13 78.6 3.1 49 139-196 1-49 (53)
31 cd00029 C1 Protein kinase C co 98.5 3.8E-08 8.2E-13 76.4 2.0 50 70-126 1-50 (50)
32 PRK02645 ppnK inorganic polyph 98.4 2.6E-05 5.6E-10 83.9 21.4 256 334-662 3-276 (305)
33 smart00109 C1 Protein kinase C 98.4 1.1E-07 2.3E-12 73.4 1.9 49 70-126 1-49 (49)
34 cd00029 C1 Protein kinase C co 98.4 2.1E-07 4.6E-12 72.2 2.5 49 139-196 1-49 (50)
35 PRK03378 ppnK inorganic polyph 98.3 4.5E-05 9.7E-10 81.5 20.4 242 334-661 5-271 (292)
36 smart00109 C1 Protein kinase C 98.2 6.9E-07 1.5E-11 68.8 2.8 48 139-196 1-48 (49)
37 PRK14075 pnk inorganic polypho 98.2 0.0003 6.5E-09 73.8 22.1 233 336-663 2-237 (256)
38 KOG0695 Serine/threonine prote 98.1 7.3E-07 1.6E-11 93.7 1.5 69 48-128 114-182 (593)
39 PRK01231 ppnK inorganic polyph 98.0 0.00062 1.3E-08 72.9 20.3 251 334-661 4-271 (295)
40 PRK02155 ppnK NAD(+)/NADH kina 97.6 0.0076 1.7E-07 64.5 21.3 252 334-662 5-271 (291)
41 PRK03372 ppnK inorganic polyph 97.5 0.0099 2.1E-07 64.0 20.9 252 334-663 5-282 (306)
42 PRK14077 pnk inorganic polypho 97.4 0.019 4.2E-07 61.3 21.0 246 334-660 10-268 (287)
43 KOG0696 Serine/threonine prote 97.4 3.5E-05 7.6E-10 83.3 -0.6 58 64-128 105-162 (683)
44 PRK03501 ppnK inorganic polyph 97.4 0.026 5.6E-07 59.6 20.7 240 334-663 2-251 (264)
45 PRK01911 ppnK inorganic polyph 97.3 0.042 9.1E-07 58.9 21.2 246 336-662 2-271 (292)
46 PF01513 NAD_kinase: ATP-NAD k 97.2 0.0041 9E-08 66.3 13.6 68 386-468 76-143 (285)
47 PRK04539 ppnK inorganic polyph 97.2 0.037 8E-07 59.4 19.7 108 334-458 5-125 (296)
48 COG3199 Predicted inorganic po 97.2 0.0013 2.9E-08 70.3 8.5 38 387-429 101-138 (355)
49 PRK02649 ppnK inorganic polyph 97.2 0.044 9.6E-07 59.0 20.2 104 542-663 166-277 (305)
50 PRK04885 ppnK inorganic polyph 96.8 0.11 2.4E-06 54.9 19.4 93 337-459 3-95 (265)
51 KOG4236 Serine/threonine prote 96.6 0.00047 1E-08 76.9 -0.3 54 137-203 144-197 (888)
52 PRK14076 pnk inorganic polypho 96.5 0.17 3.6E-06 59.4 19.8 248 335-660 291-553 (569)
53 PLN02935 Bifunctional NADH kin 96.3 0.42 9.2E-06 54.4 20.9 105 541-663 364-478 (508)
54 PRK00561 ppnK inorganic polyph 96.3 0.51 1.1E-05 49.7 20.1 103 542-662 122-241 (259)
55 PRK01185 ppnK inorganic polyph 96.3 0.51 1.1E-05 50.1 20.3 239 336-662 2-253 (271)
56 PLN02727 NAD kinase 95.7 1.4 2.9E-05 53.6 22.2 103 542-662 848-960 (986)
57 KOG1011 Neurotransmitter relea 95.5 0.0027 5.9E-08 71.7 -0.9 54 67-127 170-223 (1283)
58 KOG2996 Rho guanine nucleotide 95.2 0.0053 1.1E-07 68.9 0.0 74 44-126 499-572 (865)
59 PRK02231 ppnK inorganic polyph 94.5 2.5 5.5E-05 44.9 18.0 103 542-662 141-253 (272)
60 KOG0694 Serine/threonine prote 94.2 0.017 3.7E-07 66.8 1.1 58 137-207 157-214 (694)
61 PRK04761 ppnK inorganic polyph 93.8 5.8 0.00013 41.5 18.7 34 387-424 26-59 (246)
62 KOG0193 Serine/threonine prote 93.7 0.035 7.6E-07 63.5 2.1 78 40-127 146-226 (678)
63 KOG4239 Ras GTPase effector RA 93.5 0.013 2.7E-07 61.6 -1.6 61 61-128 43-103 (348)
64 KOG1170 Diacylglycerol kinase 92.6 0.054 1.2E-06 63.3 1.5 82 40-127 78-159 (1099)
65 PF07649 C1_3: C1-like domain; 92.0 0.044 9.5E-07 38.0 -0.1 29 84-119 2-30 (30)
66 PF03107 C1_2: C1 domain; Int 91.6 0.11 2.4E-06 36.1 1.6 29 84-119 2-30 (30)
67 KOG1011 Neurotransmitter relea 91.4 0.047 1E-06 62.1 -0.6 52 136-196 170-221 (1283)
68 KOG0695 Serine/threonine prote 91.2 0.079 1.7E-06 56.7 0.8 51 137-196 129-179 (593)
69 PLN02929 NADH kinase 91.1 15 0.00033 39.6 17.9 66 386-460 64-140 (301)
70 PF07649 C1_3: C1-like domain; 87.6 0.28 6.1E-06 33.9 1.2 29 157-190 2-30 (30)
71 KOG0957 PHD finger protein [Ge 86.2 0.46 1E-05 53.0 2.4 38 82-124 119-156 (707)
72 PF03107 C1_2: C1 domain; Int 85.8 0.5 1.1E-05 32.8 1.6 29 157-190 2-30 (30)
73 COG0061 nadF NAD kinase [Coenz 82.1 75 0.0016 33.9 20.6 106 543-665 152-266 (281)
74 PF10254 Pacs-1: PACS-1 cytoso 80.4 6 0.00013 44.3 8.2 46 387-433 76-127 (414)
75 KOG0954 PHD finger protein [Ge 78.9 0.62 1.3E-05 54.4 -0.1 37 81-122 270-306 (893)
76 cd08180 PDD 1,3-propanediol de 74.0 15 0.00033 40.0 9.1 91 335-429 23-126 (332)
77 KOG2996 Rho guanine nucleotide 73.6 1.1 2.3E-05 51.2 -0.0 50 137-195 522-571 (865)
78 KOG3564 GTPase-activating prot 73.3 1 2.3E-05 50.2 -0.1 53 69-129 286-338 (604)
79 PF14446 Prok-RING_1: Prokaryo 70.9 3.7 7.9E-05 32.6 2.4 37 154-194 4-40 (54)
80 KOG0193 Serine/threonine prote 68.6 2.3 5.1E-05 49.2 1.3 41 152-202 186-226 (678)
81 KOG3564 GTPase-activating prot 67.1 1.9 4.2E-05 48.2 0.2 41 151-195 293-333 (604)
82 PF00731 AIRC: AIR carboxylase 64.6 18 0.00038 35.1 6.2 74 346-425 8-89 (150)
83 cd08181 PPD-like 1,3-propanedi 64.5 28 0.0006 38.4 8.7 95 335-432 26-144 (357)
84 cd08197 DOIS 2-deoxy-scyllo-in 62.9 31 0.00068 38.1 8.7 87 335-427 24-125 (355)
85 cd08186 Fe-ADH8 Iron-containin 62.7 17 0.00037 40.5 6.6 97 334-433 26-148 (383)
86 KOG1244 Predicted transcriptio 62.4 4.3 9.4E-05 42.4 1.7 88 81-191 222-312 (336)
87 cd08185 Fe-ADH1 Iron-containin 61.7 39 0.00084 37.6 9.3 96 335-433 26-151 (380)
88 cd08172 GlyDH-like1 Glycerol d 60.8 49 0.0011 36.2 9.8 88 335-430 24-118 (347)
89 PF00628 PHD: PHD-finger; Int 59.6 5.9 0.00013 30.5 1.6 33 84-123 1-33 (51)
90 cd08176 LPO Lactadehyde:propan 59.2 33 0.00071 38.1 8.1 95 335-433 29-148 (377)
91 PF13831 PHD_2: PHD-finger; PD 58.5 2.2 4.7E-05 31.0 -0.9 21 103-123 3-23 (36)
92 PF12273 RCR: Chitin synthesis 58.3 11 0.00023 35.4 3.5 12 63-74 30-41 (130)
93 cd08194 Fe-ADH6 Iron-containin 57.8 36 0.00078 37.8 8.1 91 335-429 24-139 (375)
94 cd07766 DHQ_Fe-ADH Dehydroquin 56.3 50 0.0011 35.8 8.8 91 334-427 23-117 (332)
95 PF08746 zf-RING-like: RING-li 55.2 9.6 0.00021 28.8 2.1 31 158-195 1-33 (43)
96 cd08169 DHQ-like Dehydroquinat 54.7 55 0.0012 36.0 8.8 88 335-428 24-125 (344)
97 PF14803 Nudix_N_2: Nudix N-te 54.3 7 0.00015 28.1 1.1 31 83-113 1-31 (34)
98 cd08171 GlyDH-like2 Glycerol d 53.9 26 0.00056 38.4 6.1 84 335-426 23-116 (345)
99 PRK10624 L-1,2-propanediol oxi 53.4 57 0.0012 36.3 8.8 94 334-432 30-151 (382)
100 TIGR03405 Phn_Fe-ADH phosphona 53.0 90 0.002 34.4 10.2 94 335-432 24-146 (355)
101 KOG4239 Ras GTPase effector RA 52.3 2.7 5.7E-05 44.8 -1.8 42 152-196 59-100 (348)
102 cd08174 G1PDH-like Glycerol-1- 51.9 75 0.0016 34.5 9.3 83 335-426 26-111 (331)
103 cd08173 Gro1PDH Sn-glycerol-1- 51.6 54 0.0012 35.8 8.2 84 335-427 26-115 (339)
104 cd08551 Fe-ADH iron-containing 51.0 64 0.0014 35.6 8.7 95 334-432 23-142 (370)
105 cd08187 BDH Butanol dehydrogen 50.9 55 0.0012 36.4 8.2 95 335-432 29-148 (382)
106 cd08192 Fe-ADH7 Iron-containin 50.1 60 0.0013 35.9 8.3 68 335-406 25-100 (370)
107 cd08179 NADPH_BDH NADPH-depend 49.9 37 0.00081 37.6 6.6 93 335-430 24-144 (375)
108 PLN00180 NDF6 (NDH-dependent f 49.9 3.6 7.9E-05 39.3 -1.1 17 392-408 130-146 (180)
109 cd08182 HEPD Hydroxyethylphosp 49.6 71 0.0015 35.2 8.8 52 377-429 68-140 (367)
110 cd08189 Fe-ADH5 Iron-containin 49.3 64 0.0014 35.8 8.4 94 334-431 26-145 (374)
111 cd02340 ZZ_NBR1_like Zinc fing 49.3 9.3 0.0002 28.8 1.2 30 84-121 2-32 (43)
112 KOG4180 Predicted kinase [Gene 49.1 12 0.00027 40.2 2.5 60 387-458 106-167 (395)
113 TIGR02638 lactal_redase lactal 47.6 74 0.0016 35.3 8.6 94 334-432 29-150 (379)
114 PF01102 Glycophorin_A: Glycop 47.4 16 0.00035 34.1 2.7 20 20-39 70-89 (122)
115 PTZ00286 6-phospho-1-fructokin 46.9 55 0.0012 37.5 7.4 53 375-429 165-220 (459)
116 PRK00002 aroB 3-dehydroquinate 46.6 58 0.0013 35.9 7.5 88 334-427 31-133 (358)
117 PRK09860 putative alcohol dehy 45.8 80 0.0017 35.2 8.4 97 334-434 31-152 (383)
118 COG4306 Uncharacterized protei 45.6 9.2 0.0002 35.4 0.8 16 149-164 62-77 (160)
119 KOG4323 Polycomb-like PHD Zn-f 45.6 7.7 0.00017 43.9 0.4 51 66-124 155-205 (464)
120 cd08550 GlyDH-like Glycerol_de 44.4 46 0.001 36.5 6.2 87 335-429 23-118 (349)
121 KOG1453 Chimaerin and related 43.3 10 0.00022 47.2 0.9 40 81-128 555-594 (918)
122 PF00628 PHD: PHD-finger; Int 42.7 17 0.00036 27.9 1.8 31 157-192 1-31 (51)
123 cd08170 GlyDH Glycerol dehydro 42.6 67 0.0014 35.2 7.1 88 335-430 23-119 (351)
124 KOG0955 PHD finger protein BR1 42.1 12 0.00027 46.5 1.4 36 81-121 218-253 (1051)
125 KOG0782 Predicted diacylglycer 42.0 7.8 0.00017 44.3 -0.3 58 136-201 167-224 (1004)
126 PF08746 zf-RING-like: RING-li 41.7 10 0.00022 28.6 0.4 29 85-122 1-31 (43)
127 PF13831 PHD_2: PHD-finger; PD 41.7 12 0.00025 27.2 0.7 17 176-192 5-21 (36)
128 PRK00843 egsA NAD(P)-dependent 41.6 95 0.002 34.1 8.1 85 335-427 35-124 (350)
129 TIGR01357 aroB 3-dehydroquinat 41.3 1.1E+02 0.0024 33.4 8.6 82 335-422 21-115 (344)
130 cd08178 AAD_C C-terminal alcoh 40.7 1.1E+02 0.0023 34.3 8.6 57 376-433 68-152 (398)
131 cd08188 Fe-ADH4 Iron-containin 40.3 1.1E+02 0.0024 34.0 8.5 93 334-430 28-145 (377)
132 KOG0956 PHD finger protein AF1 40.3 14 0.0003 43.5 1.3 34 85-123 8-43 (900)
133 PF14446 Prok-RING_1: Prokaryo 39.9 16 0.00034 29.1 1.2 35 83-123 6-40 (54)
134 cd08183 Fe-ADH2 Iron-containin 39.9 1.2E+02 0.0027 33.5 8.8 89 335-430 23-139 (374)
135 smart00249 PHD PHD zinc finger 39.0 18 0.00039 26.4 1.4 33 84-123 1-33 (47)
136 PF10367 Vps39_2: Vacuolar sor 38.7 19 0.0004 31.9 1.7 33 153-191 76-108 (109)
137 COG1454 EutG Alcohol dehydroge 38.6 1.6E+02 0.0035 32.9 9.3 97 334-434 29-150 (377)
138 COG5151 SSL1 RNA polymerase II 38.6 15 0.00033 39.1 1.2 103 81-202 294-414 (421)
139 PF15135 UPF0515: Uncharacteri 37.4 31 0.00068 35.8 3.2 64 152-216 129-195 (278)
140 PRK06830 diphosphate--fructose 36.6 94 0.002 35.5 7.2 52 376-429 162-216 (443)
141 cd02340 ZZ_NBR1_like Zinc fing 36.5 25 0.00054 26.5 1.8 30 157-192 2-32 (43)
142 cd08195 DHQS Dehydroquinate sy 36.3 91 0.002 34.1 7.0 82 335-422 25-119 (345)
143 PF12219 End_tail_spike: Catal 36.2 18 0.0004 34.0 1.2 13 388-400 86-98 (160)
144 KOG2807 RNA polymerase II tran 36.1 35 0.00075 36.9 3.4 99 81-203 262-372 (378)
145 PF13901 DUF4206: Domain of un 35.8 26 0.00056 35.5 2.4 41 81-127 151-193 (202)
146 PRK15138 aldehyde reductase; P 35.6 1.5E+02 0.0033 33.1 8.6 95 335-432 30-150 (387)
147 KOG2178 Predicted sugar kinase 35.3 18 0.00038 40.2 1.1 33 388-424 170-202 (409)
148 PF07227 DUF1423: Protein of u 34.6 28 0.0006 39.3 2.5 24 105-128 147-170 (446)
149 PRK11572 copper homeostasis pr 34.3 1.1E+02 0.0023 32.3 6.6 53 373-426 128-180 (248)
150 PF13685 Fe-ADH_2: Iron-contai 33.9 73 0.0016 33.5 5.4 85 335-427 20-112 (250)
151 TIGR02483 PFK_mixed phosphofru 33.3 85 0.0019 34.3 6.0 50 375-429 83-132 (324)
152 PRK09423 gldA glycerol dehydro 32.5 1.4E+02 0.0031 32.9 7.7 87 335-429 30-125 (366)
153 cd08191 HHD 6-hydroxyhexanoate 32.5 1.5E+02 0.0032 33.1 7.9 93 335-431 23-140 (386)
154 TIGR02482 PFKA_ATP 6-phosphofr 32.3 93 0.002 33.6 6.0 51 376-430 81-131 (301)
155 PF03932 CutC: CutC family; I 31.9 24 0.00052 35.9 1.4 53 372-424 126-178 (201)
156 smart00661 RPOL9 RNA polymeras 31.4 37 0.00081 26.1 2.1 29 84-114 2-30 (52)
157 cd08177 MAR Maleylacetate redu 31.3 1.5E+02 0.0032 32.3 7.6 84 335-426 24-114 (337)
158 KOG3362 Predicted BBOX Zn-fing 30.9 20 0.00044 34.1 0.6 22 81-113 117-138 (156)
159 cd00763 Bacterial_PFK Phosphof 30.4 1E+02 0.0022 33.6 6.0 50 376-430 82-131 (317)
160 cd08549 G1PDH_related Glycerol 30.1 1.5E+02 0.0032 32.4 7.3 80 335-423 25-113 (332)
161 cd00363 PFK Phosphofructokinas 29.1 1.1E+02 0.0023 33.7 6.0 53 376-429 82-136 (338)
162 PF07015 VirC1: VirC1 protein; 29.0 2.4E+02 0.0052 29.3 8.1 92 335-431 1-101 (231)
163 PLN02564 6-phosphofructokinase 28.8 1E+02 0.0022 35.6 5.8 53 375-429 165-220 (484)
164 KOG0955 PHD finger protein BR1 28.6 30 0.00064 43.3 1.6 54 152-208 216-273 (1051)
165 PF10367 Vps39_2: Vacuolar sor 28.4 31 0.00067 30.5 1.4 31 83-121 79-109 (109)
166 PRK14071 6-phosphofructokinase 28.1 1.1E+02 0.0024 34.0 5.8 52 375-430 96-147 (360)
167 PRK14072 6-phosphofructokinase 27.3 1E+02 0.0022 34.9 5.5 55 375-430 92-148 (416)
168 TIGR01053 LSD1 zinc finger dom 27.2 43 0.00094 23.5 1.6 27 84-114 3-29 (31)
169 cd08175 G1PDH Glycerol-1-phosp 26.7 1.7E+02 0.0037 31.9 7.1 81 335-424 24-114 (348)
170 PF11669 WBP-1: WW domain-bind 26.0 45 0.00097 30.1 1.9 27 18-44 21-47 (102)
171 COG1979 Uncharacterized oxidor 25.8 2.2E+02 0.0048 31.3 7.3 97 330-429 26-137 (384)
172 PLN02834 3-dehydroquinate synt 25.7 2E+02 0.0042 32.8 7.4 83 335-423 101-198 (433)
173 PRK13305 sgbH 3-keto-L-gulonat 24.9 3E+02 0.0065 28.3 8.0 79 350-428 43-125 (218)
174 PRK03202 6-phosphofructokinase 24.9 1.3E+02 0.0029 32.7 5.7 50 376-430 83-132 (320)
175 PF06943 zf-LSD1: LSD1 zinc fi 24.6 54 0.0012 22.0 1.6 25 85-113 1-25 (25)
176 TIGR00640 acid_CoA_mut_C methy 24.5 5.9E+02 0.013 23.9 11.0 122 335-462 2-131 (132)
177 cd08198 DHQS-like2 Dehydroquin 24.4 3.1E+02 0.0067 30.6 8.5 87 334-423 30-134 (369)
178 PF08308 PEGA: PEGA domain; I 24.3 1E+02 0.0022 25.1 3.7 41 625-665 3-45 (71)
179 cd02339 ZZ_Mind_bomb Zinc fing 24.1 40 0.00087 25.8 1.1 29 84-120 2-32 (45)
180 PRK06756 flavodoxin; Provision 23.9 2.6E+02 0.0057 26.2 6.9 29 335-365 2-30 (148)
181 PRK15454 ethanol dehydrogenase 23.8 1.4E+02 0.003 33.5 5.7 57 376-433 96-169 (395)
182 PF13824 zf-Mss51: Zinc-finger 23.6 51 0.0011 26.4 1.6 29 84-121 1-29 (55)
183 KOG4718 Non-SMC (structural ma 23.4 24 0.00051 35.8 -0.4 30 83-121 182-211 (235)
184 PF13240 zinc_ribbon_2: zinc-r 23.3 48 0.001 21.6 1.1 22 84-113 1-22 (23)
185 PRK05637 anthranilate synthase 23.1 3.1E+02 0.0068 27.8 7.7 60 334-402 1-60 (208)
186 PF07812 TfuA: TfuA-like prote 23.0 1.8E+02 0.0038 27.2 5.2 62 635-704 52-113 (120)
187 PRK06555 pyrophosphate--fructo 22.8 1.4E+02 0.003 33.7 5.4 52 376-429 102-156 (403)
188 KOG4628 Predicted E3 ubiquitin 22.6 1.5E+02 0.0033 32.7 5.5 32 83-121 230-261 (348)
189 PF00465 Fe-ADH: Iron-containi 22.5 2.3E+02 0.0049 31.2 7.1 93 336-432 23-141 (366)
190 PF09297 zf-NADH-PPase: NADH p 22.5 51 0.0011 23.0 1.3 27 83-113 4-30 (32)
191 KOG0954 PHD finger protein [Ge 22.2 65 0.0014 38.5 2.7 49 152-204 268-321 (893)
192 cd08199 EEVS 2-epi-5-epi-valio 22.1 2.1E+02 0.0046 31.5 6.7 83 334-422 26-122 (354)
193 PRK06203 aroB 3-dehydroquinate 22.1 3.9E+02 0.0085 29.9 8.9 91 335-428 43-153 (389)
194 PF10083 DUF2321: Uncharacteri 22.1 34 0.00073 33.2 0.4 16 150-165 63-78 (158)
195 PF13901 DUF4206: Domain of un 21.9 70 0.0015 32.4 2.7 36 156-192 153-189 (202)
196 PF12273 RCR: Chitin synthesis 21.7 82 0.0018 29.4 2.9 10 22-31 2-11 (130)
197 PF02150 RNA_POL_M_15KD: RNA p 21.3 47 0.001 23.9 0.9 29 83-114 2-30 (35)
198 KOG4443 Putative transcription 21.2 48 0.001 39.0 1.4 20 102-121 33-52 (694)
199 PF15569 Imm21: Immunity prote 21.2 74 0.0016 28.2 2.3 34 361-396 2-35 (91)
200 cd00764 Eukaryotic_PFK Phospho 21.1 2.8E+02 0.0061 34.0 7.9 50 379-429 471-523 (762)
201 PRK00536 speE spermidine synth 20.9 62 0.0013 34.3 2.1 17 388-404 75-92 (262)
202 cd08184 Fe-ADH3 Iron-containin 20.8 5.9E+02 0.013 28.0 9.9 94 335-432 26-143 (347)
203 cd08193 HVD 5-hydroxyvalerate 20.3 3.9E+02 0.0084 29.6 8.4 52 377-429 74-142 (376)
No 1
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-102 Score=827.87 Aligned_cols=503 Identities=32% Similarity=0.606 Sum_probs=434.6
Q ss_pred CCCCeeEecccCCCCCccccc----cccccccccccCCCCCceeccccCcccCCCchhhhc---ccCcccccc-------
Q 005250 67 LSHHTWMEDFSNGEQPSTCCV----CLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA---KDCKCVAQA------- 132 (706)
Q Consensus 67 ~~~H~w~~~~~~~~~P~~C~v----C~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~---~~Ck~~~~~------- 132 (706)
.++|.|.+++.++ .+|.| |.-.+. ++..+.+|.+|+++||..|..... ..||.+...
T Consensus 167 ~gEHvWletnvsg---d~CYvGE~~C~~r~~------kS~~rRkCAaCkIVvHT~CieqLeKiNfrCKptFRe~gsr~~r 237 (1004)
T KOG0782|consen 167 DGEHVWLETNVSG---DECYVGEKDCRVRFA------KSGERRKCAACKIVVHTNCIEQLEKINFRCKPTFREYGSRKTR 237 (1004)
T ss_pred CceeEEEecccCC---ceeeechHHHHHHHh------hhhhhccceeeeEEEechHHHHHHHhccccccchhhccccCcc
Confidence 5789999998764 58888 542221 224557999999999999997654 589986432
Q ss_pred cccccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCC---CceeecccccccchhhhhhcccCCCCCCCCCCCCCc
Q 005250 133 CFSHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDC---PTWHCLWCQRRIHVKCHAIMSKESGDVCDLGPHRRL 209 (706)
Q Consensus 133 ~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~---~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~~~~ 209 (706)
...-+.|||+++| ...++|.+|+|.+.+.|.+.+ -++.|+||+..+|.+-.++|...+++.|.||.|+.+
T Consensus 238 E~~fvrHHWVHrr-------RqeGkC~~CgKgFQQKf~FhsKEivAisCSWCKqayH~KvtCFml~~iEEpCslGahaav 310 (1004)
T KOG0782|consen 238 ESGFVRHHWVHRR-------RQEGKCNTCGKGFQQKFFFHSKEIVAISCSWCKQAYHLKVTCFMLDKIEEPCSLGAHAAV 310 (1004)
T ss_pred cccchHHhHhhHh-------hhccccchhhhhhhhheeeccccEEEEEehHHHHHhhcchhhhhhhhhhcccccccccee
Confidence 2246899999987 458899999999998886654 378999999999999999999999999999999999
Q ss_pred eeCCCcccccccccccccccccccccccccccchhhhccccCCCCCCCccccccccccccccchhhcccccccccCCCcc
Q 005250 210 ILSPLCVKENEENIGGRMLSSIKEGIRASSVRGKIKRKRHQGKAGKSHSVNEKLQDTTSTNSALKYMFNGFVGLKSNNEK 289 (706)
Q Consensus 210 IlpP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (706)
|+||+||..+.+++ + ++.. ++|+|+
T Consensus 311 ivPPTWIlr~~~pq--n------------slka-----skkkkR------------------------------------ 335 (1004)
T KOG0782|consen 311 IVPPTWILRLANPQ--N------------SLKA-----SKKKKR------------------------------------ 335 (1004)
T ss_pred ecCchHheeecCcc--c------------hhhh-----hhhccc------------------------------------
Confidence 99999998775432 1 1111 122232
Q ss_pred ccccccccCccccCCCCcccccccCccccccccceeeeccCCC-CCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEE
Q 005250 290 NIECSKVDGSIHSNSTHNESIQKTGGTVICGQVKKYSLVDVPQ-DARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFE 368 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~d 368 (706)
.+|+|+++++... .+.++.|.|.|+++ .|+|+|||||||||||+|.++++.|-|+|||+||||
T Consensus 336 --------tsfkRKasKkg~e--------e~k~rpFvikPtsSplmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFD 399 (1004)
T KOG0782|consen 336 --------TSFKRKASKKGHE--------ENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFD 399 (1004)
T ss_pred --------Cchhhhhhhccch--------hccCCceEEccCCCCCCCceEEEecCCCCCcchHHHHHHHHHhcChhhhee
Confidence 2367777776543 35678999999885 699999999999999999999999999999999999
Q ss_pred EeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHH
Q 005250 369 LSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLS 448 (706)
Q Consensus 369 l~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~ 448 (706)
|+. .||..|++|+|++.+.|||+|||||||+|||+.|+.+++.+.|||||||+||||||||+|+|||||++ +++.
T Consensus 400 lsq-~GPK~aLEmyRKV~nLRILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytD----EPvS 474 (1004)
T KOG0782|consen 400 LSQ-LGPKFALEMYRKVVNLRILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTD----EPVS 474 (1004)
T ss_pred hhc-cCcHHHHHHHHhccceEEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCc----chHH
Confidence 995 79999999999999999999999999999999999999999999999999999999999999999985 6899
Q ss_pred HHHHHHHHhhheeecceEEEEecccc------ccccc-ccccceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhH
Q 005250 449 TILNDIEHAAVTMLDRWKVNIREENS------EYDQR-KEQSKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKL 521 (706)
Q Consensus 449 ~iL~~i~~a~~~~lDrw~v~i~~~~~------~~g~~-~~~~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl 521 (706)
+||..|+++.++.||||.+.++.+.. ++|.. ..+..+|+||||+||||+|+++||+.||+||++|+|||.|||
T Consensus 475 kil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkm 554 (1004)
T KOG0782|consen 475 KILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKM 554 (1004)
T ss_pred HHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhccchhHhhccccccccceEEEEeccccccCHHHHHHHHhhhh
Confidence 99999999999999999999887641 11221 356679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecC----ceeEEEEeccCccccCccccCCCCCCCCCCCccccCCCeEE
Q 005250 522 LYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPK----DSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLE 597 (706)
Q Consensus 522 ~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~----~~~~i~v~Ni~~~gGG~~l~~~~~~~~~~f~~~~~~DG~Le 597 (706)
.|.-.++.+++.++.+++..+|+|+|||.+++ |+ ++++|+++|||+|.+|..+|++..++ ..|.+|..+||.+|
T Consensus 555 fYaG~afsDfl~rSskDL~khi~vvCDG~DlT-PkIqeLK~qCivFlNIprYcaGTmPWG~pgdh-hDfePqrhdDGyvE 632 (1004)
T KOG0782|consen 555 FYAGLAFSDFLKRSSKDLCKHITVVCDGVDLT-PKIQELKLQCIVFLNIPRYCAGTMPWGEPGDH-HDFEPQRHDDGYVE 632 (1004)
T ss_pred hhcchhHHHHHhhhhHHhhhheEEEecCccCC-hhhhhcccceEEEecchhhhcCccCCCCCCcc-ccCCccccCCceEE
Confidence 99999999999999999999999999999876 32 47899999999999999999997544 36899999999999
Q ss_pred EEEEeCcccchhhhhcccCceEEEEecEEEEEeCCCccEEecCCCCCCceEEEEEEcCceEEEEeCCC
Q 005250 598 VVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSSPFPVQIDGEPFIQQAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 598 Vv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~~~P~~I~I~~~~~~~ml~~~~ 665 (706)
|++++- ..|+.+|+|. ++.|++||++|.+.+.+.+||||||||+...|..|+|..++++.|+.+.+
T Consensus 633 ViGFTm-asLAALQvGG-hGERl~QCreV~l~T~KaIPmQVDGEPC~LAps~Iri~lrnqa~Mvqk~K 698 (1004)
T KOG0782|consen 633 VIGFTM-ASLAALQVGG-HGERLAQCREVRLITNKAIPMQVDGEPCLLAPSIIRIGLRNQAPMVQKEK 698 (1004)
T ss_pred EEeeeH-HHHHHHhhcC-cchhhhhceeEEEEeccccceeecCcchhcchhheEEeecccchHHHHHh
Confidence 999985 5688899985 78999999999999999999999999999999999999999999997754
No 2
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-98 Score=829.74 Aligned_cols=597 Identities=36% Similarity=0.553 Sum_probs=458.1
Q ss_pred HHHHHHHhhhhhhcHHHHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccC
Q 005250 32 AILYASFKWQRRTSLNWIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCG 111 (706)
Q Consensus 32 ~~~~~~~~~~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~ 111 (706)
.++|+..++.|...+.|-+++++.++.. ..|.|.+.... +-.+|+||+.... -+.+.|++|+
T Consensus 4 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~g 65 (634)
T KOG1169|consen 4 VIYLKDIVCYRSLLETGTPVAKLEFKFP--------ILHSSEPDCII--RQMVCCVCLWSEM--------APSVDCDVDG 65 (634)
T ss_pred eEeechhhhhhhhhccCchhhhhhhccc--------cCcccCCchhH--hhhhhhhhhhccc--------ccccceeccc
Confidence 4567888899999999999988775433 58999988665 3349999997331 2348999999
Q ss_pred cccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 112 VAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 112 ~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
.++|..|...+.++|++....+..+..|+|.+.|+...+++..+++|.+|.+.|++.+...+++++|.||+++||+.|..
T Consensus 66 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~ 145 (634)
T KOG1169|consen 66 GVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVR 145 (634)
T ss_pred cchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHHHHHHh
Confidence 99999999999999999776665555666666666666899999999999999998777667899999999999999999
Q ss_pred hcccCCCCCCCCCCCCCceeCCCccccccccccccccccccccc--cc--ccccchhhhccccCCCCCCCcccccccccc
Q 005250 192 IMSKESGDVCDLGPHRRLILSPLCVKENEENIGGRMLSSIKEGI--RA--SSVRGKIKRKRHQGKAGKSHSVNEKLQDTT 267 (706)
Q Consensus 192 ~~~~~~~~~CdlG~~~~~IlpP~~i~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+.++....||+|.+|..+++|.|+.............++.... .. ......++--.+.++..+... +
T Consensus 146 ~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~h~~~~~~~~~~~------~-- 217 (634)
T KOG1169|consen 146 RADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVKADQGLTGPRCGWCQIRVHDKCKSELSQEC------D-- 217 (634)
T ss_pred hcCcccccccccccccceeecCcccccccCCccchhhhccccccccccccccceeeeeeecchHHHHhhhc------c--
Confidence 99999999999999999999999987443221111111111100 00 000000000000000000000 0
Q ss_pred ccccchhhcccccccccCCCcccccccc------ccCccccCCCCcccccccCccccccccceeeeccCCCCCCcEEEEE
Q 005250 268 STNSALKYMFNGFVGLKSNNEKNIECSK------VDGSIHSNSTHNESIQKTGGTVICGQVKKYSLVDVPQDARPLLVFI 341 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~pllV~v 341 (706)
...+.... .-++.... +...........+. ........+.+.+.|++++|++|||
T Consensus 218 ---------~~~~~~~i---~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~PLlVfv 278 (634)
T KOG1169|consen 218 ---------LGELKDHI---LPPSTLRPARTARVASDHSGLPGEKSEE-------VTDAKKMQQLLVTDPPDWRPLLVFV 278 (634)
T ss_pred ---------Chhhhhcc---CCceeeeccccccccccccccccccccc-------ccccccccccccCCCCCCcceEEEE
Confidence 00000000 00000000 00000000000000 0011112255667788999999999
Q ss_pred cCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCC---CCCCEE
Q 005250 342 NAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFE---SPPPVA 418 (706)
Q Consensus 342 NPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~---~~ppvg 418 (706)
|||||+++|+.++++|+++|||.|||||...++|..++.+|++++.+|||||||||||+|||+.+++.+.. ..||||
T Consensus 279 NpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVA 358 (634)
T KOG1169|consen 279 NPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLTLFRDVPDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVA 358 (634)
T ss_pred ecCCcccccHHHHHHHHHhcChhhEEecccCCCCchhHHHHHhCCcceEEEecCCCcchhhhhhHHHhhccccCCCCCeE
Confidence 99999999999999999999999999999866799999999999999999999999999999999997543 479999
Q ss_pred EeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEeccccc---------ccccccccceEEEE
Q 005250 419 VLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSE---------YDQRKEQSKFMLNY 489 (706)
Q Consensus 419 ILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~---------~g~~~~~~~~f~N~ 489 (706)
|||+||||||||+|+||+||++.+.. +.++|++|++|.+++||||+|.+.....+ ....+.+..+|+||
T Consensus 359 ilPLGTGNDLsR~l~WGgg~~g~~~~--~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~~~~~~~imnNY 436 (634)
T KOG1169|consen 359 ILPLGTGNDLSRVLRWGGGYPGEDRN--LIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKGDPVPYGIMNNY 436 (634)
T ss_pred EEecCCCCchHhhcCCCCCCCcchhh--HHHHHHhhhhccceecceeeEEeeccccccccccccCCCcCCCCCeeeEeee
Confidence 99999999999999999999875532 99999999999999999999998876322 11224567799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCc--eEEEEECCeEEEecCceeEEEEeccC
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPW--QVWLEVDGKGIEIPKDSEGLIVLNIG 567 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~--~v~l~~Dg~~i~l~~~~~~i~v~Ni~ 567 (706)
||||+||.|+++||.+||++|++|+||++||++|+..|+++.+...|+++.. +++++.|++++.+|.++++|+++|||
T Consensus 437 FSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~d~~dl~~p~sleGIv~LNIp 516 (634)
T KOG1169|consen 437 FSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDGDGEDLELPKSLEGIVVLNIP 516 (634)
T ss_pred eeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcccceEccCCCCceeEEEEccc
Confidence 9999999999999999999999999999999999999988888888888444 44555577888888889999999999
Q ss_pred ccccCccccCCCCCCCCCCCcc---ccCCCeEEEEEEeCcccchhhhhcccCceEEEE----ecEEEEEeCCCccEEecC
Q 005250 568 SYMGGVDLWQNDSEHDDDFSPQ---SMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQ----GKVIRIHSSSPFPVQIDG 640 (706)
Q Consensus 568 ~~gGG~~l~~~~~~~~~~f~~~---~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q----~~~i~I~~~~~~pvqvDG 640 (706)
|||||.++|++.++.+..|..+ .-+||++||++|.+.+|++++++|+..+.|++| +.++.|.+.+++||||||
T Consensus 517 S~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv~~~~h~~~~qvgL~~a~rigQ~~a~~~~~~i~~~k~~PMQiDG 596 (634)
T KOG1169|consen 517 SWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGVQDSWHLLQEQVGLESALRIGQRLAQCSERVIGTKKTFPMQIDG 596 (634)
T ss_pred ccccCcccccccCccccccccccccCCCcCeEEEEEeccchhhhhhhhccchhhHHHHHhhccEEEEeccccCcceecCC
Confidence 9999999999877666555433 344599999999999999999999999998885 455668999999999999
Q ss_pred CCCCCceEEEEEEcCceEEEEeCCCCCCCchhhHH
Q 005250 641 EPFIQQAGCLDITHHGQVFTLRRAPEEPRGHATAI 675 (706)
Q Consensus 641 E~~~~~P~~I~I~~~~~~~ml~~~~~~~~~~~~~~ 675 (706)
|||+|.|++|+|+|++++.||.++.+++++++.+.
T Consensus 597 EPW~Q~p~tI~Ithk~q~~mL~~~~~~~~~~~~~~ 631 (634)
T KOG1169|consen 597 EPWMQPPCTIEITHKNQAPMLMKAAKEKRRRFGNT 631 (634)
T ss_pred ccccCCCceEEEEecchHhhhhcccccccCccccc
Confidence 99999999999999999999999988887766543
No 3
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-78 Score=666.18 Aligned_cols=444 Identities=39% Similarity=0.704 Sum_probs=383.8
Q ss_pred eccccCcccCCCchhhhcccCccccccc-----------ccccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCC
Q 005250 106 RCAVCGVAAHFFCSEFTAKDCKCVAQAC-----------FSHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCP 174 (706)
Q Consensus 106 ~C~~C~~~vH~~C~~~~~~~Ck~~~~~~-----------~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~ 174 (706)
.|.+|..-.|..|+..-...|++..... ...|+|+|+| ||++.+++|.+|+++|++.. +++
T Consensus 64 f~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~~e~~s~~~a~mphqw~E------gnlpvsskc~vc~k~cgs~~--rlq 135 (1099)
T KOG1170|consen 64 FCVITPVRKHRLCADNRKEMEKWINQSKTPQHLEFISPENAIMPHQWME------GNLPVSSKCSVCEKPCGSVL--RLQ 135 (1099)
T ss_pred eeEecccHHhhhhccchhHHHHhhccccchhhccccCCCcccCchhhhh------cCCCcccccccccccccccc--ccC
Confidence 4556777889999998888898865321 1269999999 69999999999999999874 468
Q ss_pred ceeecccccccchhhhhhcccCCCCCCCCCCCCCceeCCCcccccccccccccccccccccccccccchhhhccccCCCC
Q 005250 175 TWHCLWCQRRIHVKCHAIMSKESGDVCDLGPHRRLILSPLCVKENEENIGGRMLSSIKEGIRASSVRGKIKRKRHQGKAG 254 (706)
Q Consensus 175 ~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~~~~IlpP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
+|||.||...||.+|..++..+ |.||..+-..+||+++.++...+. + + .+.
T Consensus 136 d~rclwc~~~vh~~c~~~~~~~----cs~~~~~~svi~ptal~~~~~dg~---~-----------v---~~~-------- 186 (1099)
T KOG1170|consen 136 DYRCLWCGCCVHDTCIGNLARA----CSLGHSALSVIPPTALKEVTPDGT---A-----------V---FWE-------- 186 (1099)
T ss_pred CcceEeeccEeehhhhhhHHhh----cccccccccccChhhhcccCCCcc---e-----------e---ehh--------
Confidence 9999999999999999999887 999999999999999876643210 0 0 000
Q ss_pred CCCccccccccccccccchhhcccccccccCCCccccccccccCccccCCCCcccccccCccccccccceeeeccCCCCC
Q 005250 255 KSHSVNEKLQDTTSTNSALKYMFNGFVGLKSNNEKNIECSKVDGSIHSNSTHNESIQKTGGTVICGQVKKYSLVDVPQDA 334 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (706)
.. -.++..
T Consensus 187 --------------------------------------------------------------------~a----~~~~~~ 194 (1099)
T KOG1170|consen 187 --------------------------------------------------------------------EA----YGGPCG 194 (1099)
T ss_pred --------------------------------------------------------------------hh----cCCCCC
Confidence 00 112457
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCC
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESP 414 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ 414 (706)
.|++||+|.|||..||.+++++|.++|||.|||||.. +||..|+.+|+.+..+|||||||||+|+||++.++..++..+
T Consensus 195 spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~-~gp~~gL~~f~~~d~friLvcggdGsv~wvls~~ds~~lh~k 273 (1099)
T KOG1170|consen 195 SPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIA-GGPDFGLTFFSHFESFRILVCGGDGSVGWVLSAIDRLNLHSK 273 (1099)
T ss_pred CceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHc-cCcchhhhhhhcccceEEEEecCCCCCcchHHHHHhccchhh
Confidence 8999999999999999999999999999999999985 799999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccc--------------------
Q 005250 415 PPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENS-------------------- 474 (706)
Q Consensus 415 ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~-------------------- 474 (706)
+.+++||+|||||+||+||||..+. ....+.+|++.++++.+.+||||.|.....+.
T Consensus 274 cql~vlplgtgndlarvlgwg~a~~---ddt~~p~il~~~eRastkmldrwsvm~~e~~~~~~~~~~~~~v~~~~~~~e~ 350 (1099)
T KOG1170|consen 274 CQLAVLPLGTGNDLARVLGWGHAFY---DDTLLPQILRTMERASTKMLDRWSVMAIEGPQADAVRRYIEKVETFLEAEET 350 (1099)
T ss_pred cccccccCCChHHHHHHhcccccCc---hhhccHHHHHHHHhhhhhhhhcchhhhhhccccchHHHHHHHHHHhcccchh
Confidence 9999999999999999999985443 23466799999999999999999997332100
Q ss_pred --------------------------------------------------------------------------------
Q 005250 475 -------------------------------------------------------------------------------- 474 (706)
Q Consensus 475 -------------------------------------------------------------------------------- 474 (706)
T Consensus 351 ~~i~~~e~q~~t~l~kiL~s~~~t~~i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k~spa~e~~~~~~~~~~ 430 (1099)
T KOG1170|consen 351 WDIIHAENQLATTLRKILHSVSHTYSILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPKCSPAGEDLPQLFEILH 430 (1099)
T ss_pred hhhhhhhhhhhhhHHhhhccccchhhhhhhccccchHHHHHHHHhhcccchhccCCchhhccccCCccccchhHHHHHhh
Confidence
Q ss_pred --------------------c--------cc-------------------------------------------------
Q 005250 475 --------------------E--------YD------------------------------------------------- 477 (706)
Q Consensus 475 --------------------~--------~g------------------------------------------------- 477 (706)
+ +|
T Consensus 431 ~es~assv~~~~t~~~~~~l~~gt~~~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kks~s~~i~~te~a~De~ 510 (1099)
T KOG1170|consen 431 SESSASSVLTALSARTYDELEIGTVHPPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKKSVSTIIDITEGAPDEP 510 (1099)
T ss_pred hhhhhhhccCCCchhhhhhhhhccccCCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhccHHHhHHHhhcCCCcc
Confidence 0 00
Q ss_pred ------------------------------c------------------------------------------------c
Q 005250 478 ------------------------------Q------------------------------------------------R 479 (706)
Q Consensus 478 ------------------------------~------------------------------------------------~ 479 (706)
. .
T Consensus 511 ~~~~~~~L~eseekm~~ks~~~~~~se~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~~~~~d~dtl~al~~~~~ 590 (1099)
T KOG1170|consen 511 RIYSDTTLNESEEKMKSKSLHPICSSEDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSPARASDSDTLSALKERKR 590 (1099)
T ss_pred cccchhhhhhhHhhhhhccCCCcccCccccccccchhhccccchhhccCCCCCcccCccccCcccccccchhhhhhcccc
Confidence 0 0
Q ss_pred cc-------cc-----------ceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCc
Q 005250 480 KE-------QS-----------KFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPW 541 (706)
Q Consensus 480 ~~-------~~-----------~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~ 541 (706)
.. .. -+||||||||+||+|.++||+.||++|+|..||.+|+|||.+.|.|++++++|+++..
T Consensus 591 ~p~~d~g~seS~L~sa~~y~EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQ 670 (1099)
T KOG1170|consen 591 TPGSDLGLSESHLRSAGQYKEKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQ 670 (1099)
T ss_pred CCcccccccccccccccchhhhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHH
Confidence 00 00 1699999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCeEEEecCceeEEEEeccCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEE
Q 005250 542 QVWLEVDGKGIEIPKDSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLA 621 (706)
Q Consensus 542 ~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~ 621 (706)
+|.|||||+++.+| .+++|+|+|||+|+||.++|+... .|+.|.++++||+.||||+++++.+|+.-++-.-+++|++
T Consensus 671 RV~LECDG~~i~lP-~LQGIviLNIpSyaGGtNFWGsnk-~dd~f~apSfDDriLEVVAvFGsvqMA~SRvI~LqhHRIA 748 (1099)
T KOG1170|consen 671 RVKLECDGVPIDLP-SLQGIVILNIPSYAGGTNFWGSNK-DDDEFTAPSFDDRILEVVAVFGSVQMATSRVIRLQHHRIA 748 (1099)
T ss_pred HeeeecCCcccCCc-ccceeEEEecccccCcccccCCCC-CCCcccCCCcccceeEEeeeehhHHHHHHHHHHhhhhhhh
Confidence 99999999999998 699999999999999999999864 5778999999999999999999998887766555789999
Q ss_pred EecEEEEEe--CCCccEEecCCCCCCceEEEEEEcCceEEEEeCC
Q 005250 622 QGKVIRIHS--SSPFPVQIDGEPFIQQAGCLDITHHGQVFTLRRA 664 (706)
Q Consensus 622 q~~~i~I~~--~~~~pvqvDGE~~~~~P~~I~I~~~~~~~ml~~~ 664 (706)
||++|+|.+ ++.+|||||||+|.|+|..|+|.|++.+.||.+.
T Consensus 749 QCr~V~I~IlGDE~IPVQvDGEaWlQPPG~irIvHKNRaQmL~Rn 793 (1099)
T KOG1170|consen 749 QCRHVRIVILGDEGIPVQVDGEAWLQPPGIIRIVHKNRAQMLARN 793 (1099)
T ss_pred hceEEEEEEecCCCCceeecCccccCCCceeeeehhhhHHHhhcc
Confidence 999999988 5899999999999999999999999999999774
No 4
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=6.4e-42 Score=363.16 Aligned_cols=273 Identities=21% Similarity=0.257 Sum_probs=224.4
Q ss_pred EEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHHhcCCCCC
Q 005250 338 LVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF--QYFRVLVCGGDGTVAWVLNAIEKRNFESP 414 (706)
Q Consensus 338 lV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~--~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ 414 (706)
+||+||.||++. +.+.+++..|..... +++..++.++++.+++++. ..+.|+|+||||||++|+|+|.. .+
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~----~~ 74 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVE----TG 74 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhc----CC
Confidence 489999999876 467788888876553 5565577888888888774 35789999999999999999975 46
Q ss_pred CCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeeccc
Q 005250 415 PPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGC 494 (706)
Q Consensus 415 ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~siG~ 494 (706)
+|+||||+||||||||.||++ .++.+.++.+..+....+|..++ +.+||+|++|+|+
T Consensus 75 ~~lgiiP~GT~Ndfar~Lg~~---------~~~~~a~~~i~~~~~~~vD~g~~--------------~~~~f~n~~g~G~ 131 (287)
T PRK13057 75 LPLGILPLGTANDLARTLGIP---------LDLEAAARVIATGQVRRIDLGWV--------------NGHYFFNVASLGL 131 (287)
T ss_pred CcEEEECCCCccHHHHHcCCC---------CCHHHHHHHHHcCCeEEeeEEEE--------------CCEEEEEEEecCc
Confidence 899999999999999999985 25777888888887777776544 4579999999999
Q ss_pred hhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCccccCcc
Q 005250 495 DAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSYMGGVD 574 (706)
Q Consensus 495 DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~gGG~~ 574 (706)
||+|+.+++..+ ++.+|+++|++.+++.++. ..+++++++.||+.+.. +...++|+|.++||||+.
T Consensus 132 da~v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~----~~~~~~~l~~d~~~~~~--~~~~~~v~N~~~~gg~~~ 197 (287)
T PRK13057 132 SAELARRLTKEL--------KRRWGTLGYAIAALRVLRR----SRPFTAEIEHDGRTERV--KTLQVAVGNGRYYGGGMT 197 (287)
T ss_pred cHHHHHHhhHHh--------hccCChhHHHHHHHHHHhh----CCCeEEEEEECCEEEEE--EEEEEEEecCcccCCCcc
Confidence 999998876421 3457999999999988764 46789999999998774 577888999999999999
Q ss_pred ccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhh------hc---ccCceEEEEecEEEEEeCCCccEEecCCCCCC
Q 005250 575 LWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQ------VG---LSQARRLAQGKVIRIHSSSPFPVQIDGEPFIQ 645 (706)
Q Consensus 575 l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~------~g---~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~~ 645 (706)
++|.+ +++||+|||+.+.....+..+. .| ..+.++++++++++|++++++++|+|||.+..
T Consensus 198 ~~p~a----------~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~~DGE~~~~ 267 (287)
T PRK13057 198 VAHDA----------TIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKPRPINTDGELTTY 267 (287)
T ss_pred cCCCC----------CCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCCcEEeeCCccCCC
Confidence 99886 4889999999998643222111 12 24568999999999999999999999999999
Q ss_pred ceEEEEEEcCceEEEEeC
Q 005250 646 QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 646 ~P~~I~I~~~~~~~ml~~ 663 (706)
.|++|+|.|+++.+++|.
T Consensus 268 ~p~~i~v~p~al~v~~p~ 285 (287)
T PRK13057 268 TPAHFRVLPKALRVLAPP 285 (287)
T ss_pred CCEEEEEECCeEEEEcCC
Confidence 999999999999999965
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=3.3e-41 Score=360.82 Aligned_cols=284 Identities=19% Similarity=0.186 Sum_probs=230.4
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
++++++|+||+||++++.+.++++...|..... +++..|+.++++.++++++ ..+.|+|+|||||||+|+|+|..
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~- 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG- 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc-
Confidence 689999999999999988888888888876543 5555567788999988775 35789999999999999999964
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
.++|+||||+||||||||.||++. .++.++++.+..+....+|..++.-.+ ...++|+|+
T Consensus 87 ---~~~~lgiiP~GT~NdfAr~lg~~~--------~~~~~a~~~i~~g~~~~iDlg~v~~~~---------~~~~~f~n~ 146 (306)
T PRK11914 87 ---TDIPLGIIPAGTGNDHAREFGIPT--------GDPEAAADVIVDGWTETVDLGRIQDDD---------GIVKWFGTV 146 (306)
T ss_pred ---CCCcEEEEeCCCcchhHHHcCCCC--------CCHHHHHHHHHcCCceEEEEEEEecCC---------CCcEEEEEE
Confidence 468999999999999999999742 246777888888888899987764311 134799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECC-eEEEecCceeEEEEeccCc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDG-KGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg-~~i~l~~~~~~i~v~Ni~~ 568 (706)
+|+|+||.|+...++.| +.+|+++|++.+++.++. ..++++++++|| +.+. .++..++|+|.++
T Consensus 147 ~~~G~~a~v~~~~~~~k---------~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~~~~v~N~~~ 211 (306)
T PRK11914 147 AATGFDSLVTDRANRMR---------WPHGRMRYNLAMLAELSK----LRPLPFRLVLDGTEEIV--TDLTLAAFGNTRS 211 (306)
T ss_pred EeeehHHHHHHHHHhcc---------ccCCchhhHHHHHHHHHh----cCCCcEEEEEeCCeEEE--eeEEEEEEeCccc
Confidence 99999999998765432 225889999999988864 467889999999 5555 3688899999999
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhh------hc---ccCceEEEEecEEEEEeCCCccEEec
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQ------VG---LSQARRLAQGKVIRIHSSSPFPVQID 639 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~------~g---~~~~~rl~q~~~i~I~~~~~~pvqvD 639 (706)
||||+.++|++ +++||+|||+.+.....+..+. .| ..+.+.++++++++|+.. ++++++|
T Consensus 212 ~GG~~~~~p~a----------~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-~~~~~~D 280 (306)
T PRK11914 212 YGGGMLICPNA----------DHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-GINAYAD 280 (306)
T ss_pred ccCCceeCCCC----------cCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-CcceecC
Confidence 99999999987 4899999999998743332221 12 124588899999999986 5899999
Q ss_pred CCCCCCceEEEEEEcCceEEEEeCC
Q 005250 640 GEPFIQQAGCLDITHHGQVFTLRRA 664 (706)
Q Consensus 640 GE~~~~~P~~I~I~~~~~~~ml~~~ 664 (706)
||+....|++|++.|+.+.+++|.+
T Consensus 281 GE~~~~~p~~i~v~p~al~v~vp~~ 305 (306)
T PRK11914 281 GDFACPLPAEISAVPGALQILRPRP 305 (306)
T ss_pred CCcCCCCceEEEEEcCeEEEECCCC
Confidence 9999888999999999999999764
No 6
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=7e-41 Score=357.99 Aligned_cols=285 Identities=20% Similarity=0.223 Sum_probs=230.6
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
|+++++|+||+||++++.+.++.+...|...+. |++..|+.++++.++++++ ..+.|+++|||||||+|+|+|...
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~ 80 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEK 80 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhC
Confidence 468999999999998877777787777776654 6666677888888888775 357899999999999999999764
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
. .++|+||||.||||||||.||++. ++.++++.+..+....+|..++ +.++|+|.
T Consensus 81 ~--~~~~lgiiP~GT~NdfAr~lgi~~---------~~~~a~~~i~~g~~~~vDlg~v--------------n~~~fln~ 135 (304)
T PRK13337 81 E--NRPKLGIIPVGTTNDFARALHVPR---------DIEKAADVIIEGHTVPVDIGKA--------------NNRYFINI 135 (304)
T ss_pred C--CCCcEEEECCcCHhHHHHHcCCCC---------CHHHHHHHHHcCCeEEEEEEEE--------------CCEEEEee
Confidence 2 468999999999999999999752 5677777777777777775433 56899999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~ 569 (706)
+|+|+||.|+.+... + .++.+|+++|+..+++.+.. ..+++++++.||+.++. +...++|+|.++|
T Consensus 136 ~g~G~~a~v~~~~~~-~-------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~ 201 (304)
T PRK13337 136 AGGGRLTELTYEVPS-K-------LKTMLGQLAYYLKGIEMLPS----LKATDVRIEYDGKLFQG--EIMLFLLGLTNSV 201 (304)
T ss_pred ehhhHHHHHHHhcCH-H-------HhcCcccHHHHHHHHHHHhh----CCCceEEEEECCeEEEe--EEEEEEEEcCccc
Confidence 999999999987642 1 13457899999999877653 46788999999987763 5778999999999
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh------hhc---ccCceEEEEecEEEEEeCCCccEEecC
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL------QVG---LSQARRLAQGKVIRIHSSSPFPVQIDG 640 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l------~~g---~~~~~rl~q~~~i~I~~~~~~pvqvDG 640 (706)
|||+.++|.+ .++||+|||+.+.....+..+ ..| ..+.+.+.++++++|+..+++++|+||
T Consensus 202 gg~~~~~p~a----------~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~iDG 271 (304)
T PRK13337 202 GGFEKLAPDA----------SLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDKMQLNLDG 271 (304)
T ss_pred CCccccCCcc----------cCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCCCeEEeCC
Confidence 9999999886 489999999999874322221 112 234688899999999999899999999
Q ss_pred CCCCCceEEEEEEcCceEEEEeCCCCC
Q 005250 641 EPFIQQAGCLDITHHGQVFTLRRAPEE 667 (706)
Q Consensus 641 E~~~~~P~~I~I~~~~~~~ml~~~~~~ 667 (706)
|+....|++|++.|+.+.+++|.+.++
T Consensus 272 E~~~~~p~~i~v~p~al~v~~p~~~~~ 298 (304)
T PRK13337 272 EYGGKLPAEFENLYRHIEVFVPKDQEN 298 (304)
T ss_pred CcCCCCCEEEEEecceEEEEecccccc
Confidence 999999999999999999999776543
No 7
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.9e-40 Score=351.75 Aligned_cols=279 Identities=19% Similarity=0.215 Sum_probs=217.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E--EEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V--FELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V--~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
|+++++|+||.||++++.+.+.++...|.... + +........+.+.+.+. ...+.|+++|||||||+|+|+|.+.
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDID-ESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhh-cCCCEEEEECCccHHHHHHHHHHhc
Confidence 46799999999999988777788887776544 2 22222122222222221 1457899999999999999999864
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
+ .++|+||||+||||||||+||++ .++.+.++.+..+....+|..++ +++||+|+
T Consensus 80 ~--~~~~lgviP~GTgNdfAr~lgi~---------~~~~~a~~~i~~g~~~~vDlg~v--------------~~~~f~n~ 134 (295)
T PRK13059 80 N--IDLPIGILPVGTANDFAKFLGMP---------TDIGEACEQILKSKPKKVDLGKI--------------NDKYFINV 134 (295)
T ss_pred C--CCCcEEEECCCCHhHHHHHhCCC---------CCHHHHHHHHHhCCcEEeeEEEE--------------CCEEEEEE
Confidence 3 46899999999999999999975 25777788888888888876544 45799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~ 569 (706)
+|+|+||+|+...+.. .++.+|+++|+..+++.++. ..+++++++.||+.++. +...++|+|.++|
T Consensus 135 ~~~G~~a~v~~~~~~~--------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~~ 200 (295)
T PRK13059 135 ASTGLFTDVSQKTDVN--------LKNTIGKLAYYLKGLEELPN----FRKLKVKVTSEEVNFDG--DMYLMLVFNGQTA 200 (295)
T ss_pred EeeeechhhhhhccHH--------HhhCcchHHHHHHHHHHHhc----CCCeeEEEEECCEEEEe--eEEEEEEEcCccc
Confidence 9999999999876531 13457999999999998763 46788999999998763 5788899999987
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhh------hc---ccCc-eEEEEecEEEEEeCCCccEEec
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQ------VG---LSQA-RRLAQGKVIRIHSSSPFPVQID 639 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~------~g---~~~~-~rl~q~~~i~I~~~~~~pvqvD 639 (706)
| |+.++|.+ +++||+|||+.+.....+..+. .| ..+. +++.++++++|+..+++++|+|
T Consensus 201 G-g~~~~p~a----------~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~~~~~~~D 269 (295)
T PRK13059 201 G-NFNLAYKA----------EVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNEEIVTDID 269 (295)
T ss_pred c-CcccCCcc----------cCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCCCceEEeC
Confidence 6 57888876 4899999999998754333221 12 1245 8899999999999889999999
Q ss_pred CCCCCCceEEEEEEcCceEEEEeC
Q 005250 640 GEPFIQQAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 640 GE~~~~~P~~I~I~~~~~~~ml~~ 663 (706)
||+....|++|++.|+++.+++|.
T Consensus 270 GE~~~~~p~~i~v~p~al~v~~p~ 293 (295)
T PRK13059 270 GERGPDFPLNIECIKGGLKVLGIL 293 (295)
T ss_pred CCcCCCCcEEEEEecCeeEEEecC
Confidence 999999999999999999999974
No 8
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=3e-40 Score=352.48 Aligned_cols=282 Identities=18% Similarity=0.162 Sum_probs=225.6
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
|+.+++|+||++++. +.+..+...|...+. |++..|+.++++.++++++ ..+.|+++|||||||+|+|+|.+.
T Consensus 3 ~~~~~~i~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~ 79 (300)
T PRK13054 3 FPKSLLILNGKSAGN---EELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL 79 (300)
T ss_pred CceEEEEECCCccch---HHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh
Confidence 688999999998642 445555556665554 6666677888888888775 357899999999999999999865
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccc-eEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSK-FMLN 488 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~-~f~N 488 (706)
....++|+||||+||||||||+||++ .++.++++.+..+....+|.+.+ +.+ ||+|
T Consensus 80 ~~~~~~~lgiiP~GTgNdfar~lgi~---------~~~~~a~~~i~~g~~~~iDlg~v--------------~~~~~f~n 136 (300)
T PRK13054 80 EGDARPALGILPLGTANDFATAAGIP---------LEPDKALKLAIEGRAQPIDLARV--------------NDRTYFIN 136 (300)
T ss_pred ccCCCCcEEEEeCCcHhHHHHhcCCC---------CCHHHHHHHHHhCCceEEEEEEE--------------cCceEEEE
Confidence 33346899999999999999999985 25778888888888888887644 344 9999
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCc
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~ 568 (706)
.+|+|+||+|+.+..+. .++.+|+++|++.+++.++. ..+++++++.||+.++. +...++|+|.++
T Consensus 137 ~~~~G~~a~v~~~~~~~--------~k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~ 202 (300)
T PRK13054 137 MATGGFGTRVTTETPEK--------LKAALGGVAYLIHGLMRMDT----LKPDRCEIRGPDFHWQG--DALVIGIGNGRQ 202 (300)
T ss_pred EeecchhHHHHHhhHHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEeCCcEEEe--eEEEEEEECCCc
Confidence 99999999999876531 13457999999999988763 56788999999987763 688899999999
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCccc-chhh---hhc---ccCceEEEEecEEEEEeCCCccEEecCC
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWH-LGKL---QVG---LSQARRLAQGKVIRIHSSSPFPVQIDGE 641 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~-l~~l---~~g---~~~~~rl~q~~~i~I~~~~~~pvqvDGE 641 (706)
||||+.++|++ +++||+|||+.+..... +..+ ..+ ..+.+++.++++++|+..+++++|+|||
T Consensus 203 ~ggg~~~~p~a----------~~~DG~ldv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~~~~~~iDGE 272 (300)
T PRK13054 203 AGGGQQLCPEA----------LINDGLLDLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPHELTFNLDGE 272 (300)
T ss_pred CCCCcccCCCC----------cCCCCeEEEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCCCCEEEeCCC
Confidence 99999999886 48999999999987111 1111 112 2345788999999999988999999999
Q ss_pred CCCCceEEEEEEcCceEEEEeCCC
Q 005250 642 PFIQQAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 642 ~~~~~P~~I~I~~~~~~~ml~~~~ 665 (706)
+....|++|++.|+++.+++|...
T Consensus 273 ~~~~~p~~i~v~p~al~vl~p~~~ 296 (300)
T PRK13054 273 PLSGRHFRIEVLPAALRCRLPPDC 296 (300)
T ss_pred cCCCccEEEEEEcCeeEEEeCCCC
Confidence 999999999999999999997653
No 9
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.8e-40 Score=355.13 Aligned_cols=286 Identities=18% Similarity=0.172 Sum_probs=228.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEec-cCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHh
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSA-SQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~-t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
|++++||+||+||++++.+.+.++..+|....+ +++.. +..+.++.++++++ ..+.|+|+|||||||+|+|+|..
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~ 81 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP 81 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh
Confidence 468999999999999988889999998876654 44432 33556777777665 35789999999999999999986
Q ss_pred cCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEE
Q 005250 409 RNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLN 488 (706)
Q Consensus 409 ~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N 488 (706)
.. ..+|+||||+||||||||+|+++. .++.++++.+..+....+|...+. +.+||+|
T Consensus 82 ~~--~~~~LgiiP~GTgNdfAr~Lgi~~--------~~~~~a~~~l~~g~~~~vD~g~v~-------------~~~~F~n 138 (334)
T PRK13055 82 LE--KRPKMAIIPAGTTNDYARALKIPR--------DNPVEAAKVILKNQTIKMDIGRAN-------------EDKYFIN 138 (334)
T ss_pred cC--CCCcEEEECCCchhHHHHHcCCCC--------cCHHHHHHHHHcCCcEEeeEEEEC-------------CCcEEEE
Confidence 42 468999999999999999999742 146777888887877778765442 3579999
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCc
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~ 568 (706)
.+|+|+||.|+...+.. .++.+|+++|+..+++.++. ..++++++++||..... +..++++.|.++
T Consensus 139 ~ag~G~da~v~~~~~~~--------~k~~~G~laY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~ 204 (334)
T PRK13055 139 IAAGGSLTELTYSVPSQ--------LKSMFGYLAYLAKGAELLPR----VSPVPVRITYDEGVFEG--KISMFFLALTNS 204 (334)
T ss_pred EehhccchHHHHhcCHH--------HHhhccHHHHHHHHHHHHHh----cCCeeEEEEECCEEEEE--EEEEEEEEcCcc
Confidence 99999999999776532 13457999999999988764 56788999999987663 577888999999
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccch------hhhh-c---ccCceEEEEecEEEEEeCC--CccE
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLG------KLQV-G---LSQARRLAQGKVIRIHSSS--PFPV 636 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~------~l~~-g---~~~~~rl~q~~~i~I~~~~--~~pv 636 (706)
||||+.++|.+ .++||+|+|+.+.....+. .+.. | ..+.+++.++++++|+... ++++
T Consensus 205 ~Gg~~~~~p~a----------~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~ 274 (334)
T PRK13055 205 VGGFEQIVPDA----------KLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMV 274 (334)
T ss_pred cCCccccCCCC----------cCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceE
Confidence 99999998886 4899999999998743222 1222 3 1346889999999999753 5999
Q ss_pred EecCCCCCCceEEEEEEcCceEEEEeCCCC
Q 005250 637 QIDGEPFIQQAGCLDITHHGQVFTLRRAPE 666 (706)
Q Consensus 637 qvDGE~~~~~P~~I~I~~~~~~~ml~~~~~ 666 (706)
|+|||+.+..|++|++.|+.+.+++|....
T Consensus 275 ~iDGE~~~~~pv~i~v~p~al~v~~p~~~~ 304 (334)
T PRK13055 275 NLDGEYGGDAPMTFENLKQHIEFFANTDEI 304 (334)
T ss_pred eeCCCcCCCCcEEEEEEcCeEEEEeCcccC
Confidence 999999999999999999999999976543
No 10
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=5.1e-40 Score=349.62 Aligned_cols=280 Identities=19% Similarity=0.167 Sum_probs=218.9
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhcCC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKRNF 411 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~~~ 411 (706)
++++|+||+||..+ .+.++...|....+ |++..|+.++++.++++++ ..+.|+|+|||||||+|+|+|...+.
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~ 77 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRD 77 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCC
Confidence 36899999988432 34445555655544 5655677788888888774 35789999999999999999986543
Q ss_pred CCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEee
Q 005250 412 ESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLG 491 (706)
Q Consensus 412 ~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~s 491 (706)
...+|+||||+||||||||+||++. ++.++++.+..+....+|...+. ..++|+|.+|
T Consensus 78 ~~~~~lgiiP~GTgNdfAr~l~ip~---------~~~~a~~~i~~g~~~~iDlg~v~-------------~~~~f~n~~~ 135 (293)
T TIGR03702 78 DAAPALGLLPLGTANDFATAAGIPL---------EPAKALKLALNGAAQPIDLARVN-------------GKHYFLNMAT 135 (293)
T ss_pred CCCCcEEEEcCCchhHHHHhcCCCC---------CHHHHHHHHHhCCceeeeEEEEC-------------CccEEEEEee
Confidence 3457899999999999999999852 56777888888888888865441 1269999999
Q ss_pred ccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcccc
Q 005250 492 IGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSYMG 571 (706)
Q Consensus 492 iG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~gG 571 (706)
+|+||+|+.+.+.. .++.+|+++|+.++++.+.. ..+++++++.|+..+. .+...++|+|.++|||
T Consensus 136 ~G~da~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~~~~~~~--~~~~~~~v~N~~~~GG 201 (293)
T TIGR03702 136 GGFGTRVTTETSEK--------LKKALGGAAYLITGLTRFSE----LTAASCEFRGPDFHWE--GDFLALGIGNGRQAGG 201 (293)
T ss_pred cccchHhhhhhhHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEECCEEEE--eeEEEEEEECCCcCCC
Confidence 99999999887642 14457999999999988763 4568888888887665 3578889999999999
Q ss_pred CccccCCCCCCCCCCCccccCCCeEEEEEEeCcccch----hhhhcc-cCceEEEEecEEEEEeCCCccEEecCCCCCCc
Q 005250 572 GVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLG----KLQVGL-SQARRLAQGKVIRIHSSSPFPVQIDGEPFIQQ 646 (706)
Q Consensus 572 G~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~----~l~~g~-~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~~~ 646 (706)
|+.+.|++ .++||+|||+.+.....+- .+..|. ...+...++++++|++.+++++|+|||+.+..
T Consensus 202 g~~i~P~A----------~~~DG~Ldv~~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~~~~~~~vDGE~~~~~ 271 (293)
T TIGR03702 202 GQVLCPDA----------LINDGLLDVRILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAPQPLTFNLDGEPLSGR 271 (293)
T ss_pred CceeCCCC----------ccCCceEEEEEeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeCCCcEEEECCCcCCCc
Confidence 99999987 4899999999997632221 111232 23456677899999998899999999999999
Q ss_pred eEEEEEEcCceEEEEeCC
Q 005250 647 AGCLDITHHGQVFTLRRA 664 (706)
Q Consensus 647 P~~I~I~~~~~~~ml~~~ 664 (706)
|++|++.|+.+.+++|..
T Consensus 272 p~~i~v~p~al~v~~p~~ 289 (293)
T TIGR03702 272 HFRIEVLPGALRCHLPPG 289 (293)
T ss_pred eEEEEEEcCeEEEEcCCC
Confidence 999999999999999643
No 11
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=6.9e-40 Score=349.72 Aligned_cols=281 Identities=17% Similarity=0.160 Sum_probs=224.0
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhcC
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKRN 410 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~~ 410 (706)
+++++||+||.||++++.+.+++++.+|...--|++..|+.+.++.++++++ ..+.|+++|||||||+|+|+|..
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~-- 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG-- 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc--
Confidence 4689999999999998888888888888764226666677888888888775 35789999999999999999975
Q ss_pred CCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEe
Q 005250 411 FESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYL 490 (706)
Q Consensus 411 ~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~ 490 (706)
..+|+||||+||||||||+||++ .++.+.++.+.++....+|...+ +.++|+|.+
T Consensus 80 --~~~~lgviP~GTgNdfAr~lgi~---------~~~~~a~~~i~~g~~~~iDlg~v--------------n~~~fin~a 134 (300)
T PRK00861 80 --TDIPLGIIPRGTANAFAAALGIP---------DTIEEACRTILQGKTRRVDVAYC--------------NGQPMILLA 134 (300)
T ss_pred --CCCcEEEEcCCchhHHHHHcCCC---------CCHHHHHHHHHcCCcEEeeEEEE--------------CCEEEEEEE
Confidence 46899999999999999999985 25777888888888888886543 457999999
Q ss_pred eccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCccc
Q 005250 491 GIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSYM 570 (706)
Q Consensus 491 siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~g 570 (706)
|+|+||+|+...++. .++.+|+++|++.+++.++. ..+++++++.||+.++. +..+++|+|.++|+
T Consensus 135 ~~G~~a~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~i~v~N~~~~~ 200 (300)
T PRK00861 135 GIGFEAETVEEADRE--------AKNRFGILAYILSGLQQLRE----LESFEVEIETEDQIITT--NAVAVTVANAAPPT 200 (300)
T ss_pred eccHHHHHHHHhhHH--------HHhcccHHHHHHHHHHHhcc----CCCeeEEEEECCeEEEE--EEEEEEEECCCCcc
Confidence 999999999876532 13457899999999988763 56789999999987764 57789999997553
Q ss_pred cCcc-ccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh----------hhc---ccCceEEEEecEEEEEeCCCccE
Q 005250 571 GGVD-LWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL----------QVG---LSQARRLAQGKVIRIHSSSPFPV 636 (706)
Q Consensus 571 GG~~-l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l----------~~g---~~~~~rl~q~~~i~I~~~~~~pv 636 (706)
+.+. ..|. ..++||+|||+.+.....+..+ ..| ..+.+++.++++++|++.+++++
T Consensus 201 ~~~~~g~p~----------a~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~~~~~ 270 (300)
T PRK00861 201 SVLAQGPGA----------VIPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDPPQKV 270 (300)
T ss_pred cccccCCCC----------CCCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCCCeEE
Confidence 2221 1223 3589999999999875332221 112 23468899999999999999999
Q ss_pred EecCCCCCCceEEEEEEcCceEEEEeCCC
Q 005250 637 QIDGEPFIQQAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 637 qvDGE~~~~~P~~I~I~~~~~~~ml~~~~ 665 (706)
|+|||+....|++|++.|+++.+++|.+.
T Consensus 271 ~~DGE~~~~~p~~i~v~p~al~v~~p~~~ 299 (300)
T PRK00861 271 VIDGEVVGTTPIEIECLPRSLKVFAPLQA 299 (300)
T ss_pred EECCccCCCceEEEEEECCEEEEEeCCCC
Confidence 99999999999999999999999997654
No 12
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=1.2e-39 Score=346.63 Aligned_cols=279 Identities=20% Similarity=0.242 Sum_probs=223.5
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
|++++||+||.||++.+.+.++++...|...++ +++..+..++++.+.+++. ..+.|+++|||||+++|+|+|...
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~ 80 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQL 80 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcC
Confidence 468999999999998888888888888876654 5555455554555554433 357899999999999999999753
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccce-EEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKF-MLN 488 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~-f~N 488 (706)
. ..|+|||||+||+|||||+|+++ .++.+.++.+.++....+|...+ +.++ |+|
T Consensus 81 ~--~~~~lgiiP~Gt~N~~a~~l~i~---------~~~~~~~~~l~~~~~~~~Dlg~v--------------~~~~~fln 135 (293)
T TIGR00147 81 D--DIPALGILPLGTANDFARSLGIP---------EDLDKAAKLVIAGDARAIDMGQV--------------NKQYCFIN 135 (293)
T ss_pred C--CCCcEEEEcCcCHHHHHHHcCCC---------CCHHHHHHHHHcCCceEEEEEEE--------------CCeEEEEE
Confidence 2 35799999999999999999985 25777888888887777776433 4578 999
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCc
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~ 568 (706)
++|+|+||+++.+++.. .++.+|+++|..++++.+. +..+++++++.||+.++. +..+++++|.++
T Consensus 136 ~~g~G~~a~v~~~~~~~--------~k~~~g~~~Y~~~~l~~l~----~~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~ 201 (293)
T TIGR00147 136 MAGGGFGTEITTETPEK--------LKAALGSLSYILSGLMRMD----TLQPFRCEIRGEGEHWQG--EAVVFLVGNGRQ 201 (293)
T ss_pred EEeechhhHhHhhCCHH--------HHhccchHHHHHHHHHHHh----hCCCeeEEEEECCeEEEe--eEEEEEEeCCcc
Confidence 99999999999876431 2445799999999988875 346788999999998874 567788889999
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh------hhc---ccCceEEEEecEEEEEeCCCccEEec
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL------QVG---LSQARRLAQGKVIRIHSSSPFPVQID 639 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l------~~g---~~~~~rl~q~~~i~I~~~~~~pvqvD 639 (706)
||||+.++|.+ .++||.|||+.+.+...+..+ ..| ..+.+++.++++++|++++++++|+|
T Consensus 202 ~gg~~~~~p~a----------~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~iD 271 (293)
T TIGR00147 202 AGGGQKLAPDA----------SINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPHKITFNLD 271 (293)
T ss_pred cCCCcccCCcc----------ccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCCCcEEEeC
Confidence 99999998876 479999999999875332222 112 23568899999999999989999999
Q ss_pred CCCCCCceEEEEEEcCceEEEE
Q 005250 640 GEPFIQQAGCLDITHHGQVFTL 661 (706)
Q Consensus 640 GE~~~~~P~~I~I~~~~~~~ml 661 (706)
||++...|++|+|.|+++.+++
T Consensus 272 GE~~~~~p~~i~v~p~al~~~~ 293 (293)
T TIGR00147 272 GEPLGGTPFHIEILPAHLRCRL 293 (293)
T ss_pred CCcCCCCcEEEEEEhhccEEeC
Confidence 9999999999999999999875
No 13
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=331.57 Aligned_cols=284 Identities=26% Similarity=0.381 Sum_probs=233.2
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
++++.+|+||.||.+.+.+.++.++..|..+.. +....++.+++|.++++++ +++.|+++|||||||+|+|+|.+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~ 81 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT 81 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcC
Confidence 578999999999999999999999999987654 4444455668899988886 478999999999999999999985
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccc-eEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSK-FMLN 488 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~-~f~N 488 (706)
. .++|||||+||+|||||+|||+. .++.+.++-+.++....+|.. ..+.+ ||+|
T Consensus 82 ~---~~~LgilP~GT~NdfAr~Lgip~--------~~~~~Al~~i~~g~~~~vDlg--------------~~~~~~~fin 136 (301)
T COG1597 82 D---DPPLGILPGGTANDFARALGIPL--------DDIEAALELIKSGETRKVDLG--------------QVNGRRYFIN 136 (301)
T ss_pred C---CCceEEecCCchHHHHHHcCCCc--------hhHHHHHHHHHcCCeEEEeeh--------------hcCCcceEEE
Confidence 4 23399999999999999999963 147777888888777777754 22444 9999
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCc
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~ 568 (706)
.+|+|++|+++.+.+..|. +.+|+++|++.+++.+. ...++.+++++|++.++. +...+++.|.++
T Consensus 137 ~a~~G~~a~~~~~~~~~~k--------~~~g~~~y~~~~~~~l~----~~~~~~~~i~~d~~~~~~--~~~~~~~~~~~~ 202 (301)
T COG1597 137 NAGIGFDAEVVAAVEEERK--------KGFGRLAYALAGLAVLA----RLKPFRIEIEYDGKTFEG--EALALLVFNGNS 202 (301)
T ss_pred EeecchhHHHHHhhcHHHH--------hccchHHHHHHHHHhcc----ccCCCcEEEEEcCcEEEE--EEEEEEEecCcc
Confidence 9999999999999876543 34789999999987765 357899999999999884 577788888889
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccch------hhhhc---ccCceEEEEecEEEEEeCCCccEEec
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLG------KLQVG---LSQARRLAQGKVIRIHSSSPFPVQID 639 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~------~l~~g---~~~~~rl~q~~~i~I~~~~~~pvqvD 639 (706)
++|+..+.|++ +++||+|+++.+.....+. .+..| ....+.+.++++++|+...++++++|
T Consensus 203 ~gg~~~~~p~a----------~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~~D 272 (301)
T COG1597 203 YGGGMKLAPDA----------SLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDPPIPVNLD 272 (301)
T ss_pred cccccccCCcC----------CCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCCCceEeeC
Confidence 99999998886 5899999999998752221 11122 12348899999999999999999999
Q ss_pred CCCCCCceEEEEEEcCceEEEEeCCCC
Q 005250 640 GEPFIQQAGCLDITHHGQVFTLRRAPE 666 (706)
Q Consensus 640 GE~~~~~P~~I~I~~~~~~~ml~~~~~ 666 (706)
||+.+..|++|++.|+++.+++|....
T Consensus 273 GE~~~~~p~~i~~~p~al~vl~p~~~~ 299 (301)
T COG1597 273 GEYLGKTPVTIEVLPGALRVLVPPDRP 299 (301)
T ss_pred CccCCCCcEEEEEecccEEEEcCCCCC
Confidence 999999999999999999999987643
No 14
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=354.25 Aligned_cols=286 Identities=19% Similarity=0.248 Sum_probs=223.5
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhcC
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKRN 410 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~~ 410 (706)
+++++||+||+||++++.+.+++++..|...--+++..|+..+++.++++++ ..+.|+|+|||||||+|+|++.+
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~~-- 319 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASELVN-- 319 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHhc--
Confidence 5789999999999999999999999999875225555677778888888775 34689999999999999999975
Q ss_pred CCCCCCEEEeeCCCcchhhhhc-ccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 411 FESPPPVAVLPLGTGNDMSRVL-QWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 411 ~~~~ppvgILPlGTGNDlAR~L-gwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
.++++||||+||||||||+| |++..+ .++.+.++.+..+....+|...+ ++++|+|+
T Consensus 320 --~~~~lgiiP~GTgNdfAr~L~gi~~~~------~~~~~a~~~i~~g~~~~iD~g~v--------------n~~~fln~ 377 (547)
T PRK12361 320 --TDITLGIIPLGTANALSHALFGLGSKL------IPVEQACDNIIQGHTQRIDTARC--------------NDRLMLLL 377 (547)
T ss_pred --CCCCEEEecCCchhHHHHHhcCCCCCC------ccHHHHHHHHHhCCCeEEEEEEE--------------cCeEEEEE
Confidence 46899999999999999999 885211 25777888888888888886533 56799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~ 569 (706)
+|+|+||+|+.+.++.+ ++.+|+++|+..+++.+.. ..++++++++||++... .+...++|+|.++|
T Consensus 378 agiG~da~v~~~~~~~~--------k~~~G~laY~~~~~~~l~~----~~~~~l~i~~dg~~~~~-~~~~~l~v~N~~~~ 444 (547)
T PRK12361 378 VGIGFEQKMIESADRER--------KNALGQLAYLDGLWRAVNE----NETLTLTVTLDDAEPQT-ISTHSLVVANAAPF 444 (547)
T ss_pred EeechhHHHHHhccHHH--------HhccCHHHHHHHHHHHhhc----CCCeeEEEEECCCCceE-EEEEEEEEEcCCCc
Confidence 99999999998765422 3457999999998888764 56789999999974331 25778889998765
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcc----cchhh----hhc-----ccCceEEEEecEEEEEeCCCccE
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAW----HLGKL----QVG-----LSQARRLAQGKVIRIHSSSPFPV 636 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~----~l~~l----~~g-----~~~~~rl~q~~~i~I~~~~~~pv 636 (706)
++.... +.. .++++||+|||+.+.... ++..+ ..+ ..+.+++.++++++|+..+++++
T Consensus 445 ~~~~~~-Ggg--------~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~~~~~ 515 (547)
T PRK12361 445 TSLLAQ-GGG--------EPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQKPIKY 515 (547)
T ss_pred cccccc-CCC--------CCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCCceEE
Confidence 321100 000 025899999999998642 11111 111 23568899999999999999999
Q ss_pred EecCCCCCCceEEEEEEcCceEEEEeCCC
Q 005250 637 QIDGEPFIQQAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 637 qvDGE~~~~~P~~I~I~~~~~~~ml~~~~ 665 (706)
|+|||+....|++|+|.|+++.+++|.+.
T Consensus 516 ~iDGE~~~~~p~~i~v~p~al~vlvp~~~ 544 (547)
T PRK12361 516 VIDGELFEDEDLTIEVQPASLKVFVPYQE 544 (547)
T ss_pred EECCccCCceEEEEEEecCceEEEecCcc
Confidence 99999999999999999999999997654
No 15
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=1.6e-36 Score=341.49 Aligned_cols=285 Identities=18% Similarity=0.195 Sum_probs=218.3
Q ss_pred CCCcEEEEEcCCcCCCChHHHHH-HHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHH
Q 005250 333 DARPLLVFINAKSGGQLGHYLRR-RLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~-~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
.+++++|||||.||++++.+++. .++.+|...++ |++..|+.+++|.++++++ .++.|||+|||||||+|+|+|.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGLL 189 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHh
Confidence 35789999999999999888764 68888887765 7777788999999998876 3578999999999999999997
Q ss_pred hcCC---CCCCCEEEeeCCCcchhhhhc----ccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccc
Q 005250 408 KRNF---ESPPPVAVLPLGTGNDMSRVL----QWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRK 480 (706)
Q Consensus 408 ~~~~---~~~ppvgILPlGTGNDlAR~L----gwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~ 480 (706)
.... ..++||||||+||||||||+| |++ .++.+.+..|..+....+|..++.- .
T Consensus 190 ~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip---------~~~~~A~~~I~~g~~~~vDlg~v~~--~-------- 250 (481)
T PLN02958 190 EREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEP---------CSATNAVLAIIRGHKCSLDVATILQ--G-------- 250 (481)
T ss_pred hCccccccccCceEEecCcCcchhhhhhccccCCC---------cCHHHHHHHHHcCCceEEeEEEEEc--C--------
Confidence 6421 236899999999999999999 653 2566777788888889999877641 1
Q ss_pred cccc-eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEE------------
Q 005250 481 EQSK-FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEV------------ 547 (706)
Q Consensus 481 ~~~~-~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~------------ 547 (706)
..+ +++|.+|+|+||+|....+. +|++|+++|.+++++.++. ..+++++|.+
T Consensus 251 -~~~~f~vn~~g~GfdAdV~~~se~----------kr~lG~lrY~~~~l~~l~~----~r~y~~~I~~~~a~~~~~~~~~ 315 (481)
T PLN02958 251 -ETKFFSVLMLAWGLVADIDIESEK----------YRWMGSARLDFYGLQRILC----LRQYNGRISFVPAPGFEAYGEP 315 (481)
T ss_pred -CceEEEEEeeeeehhhhhhccccc----------ccccchHHHHHHHHHHHHh----cCCcceEEEEEecccccccccc
Confidence 123 45899999999999654321 4568999999999999875 3455566552
Q ss_pred ---CCe-------------EEEec-------------CceeEEEEeccCccccCccccCCCCCCCCCCCccccCCCeEEE
Q 005250 548 ---DGK-------------GIEIP-------------KDSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEV 598 (706)
Q Consensus 548 ---Dg~-------------~i~l~-------------~~~~~i~v~Ni~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeV 598 (706)
+++ .++.+ ..+.+++++|.++||||+.+.|.+ .++||+|||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A----------~l~DG~LDl 385 (481)
T PLN02958 316 TSYNGESTSKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDA----------KFSDGYLDL 385 (481)
T ss_pred ccccccccccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcc----------cCCCCeEEE
Confidence 221 00000 012335589999999999999987 589999999
Q ss_pred EEEeCcccchhhh------hc---ccCceEEEEecEEEEEeC-------CCccEEecCCCCCCceEEEEEEcCceEEEE
Q 005250 599 VCVCGAWHLGKLQ------VG---LSQARRLAQGKVIRIHSS-------SPFPVQIDGEPFIQQAGCLDITHHGQVFTL 661 (706)
Q Consensus 599 v~v~~~~~l~~l~------~g---~~~~~rl~q~~~i~I~~~-------~~~pvqvDGE~~~~~P~~I~I~~~~~~~ml 661 (706)
+.+.....+..+. .| ..+.+.++++++++|+.. ++.++++|||+....|++|++.|+++.++-
T Consensus 386 viv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~ 464 (481)
T PLN02958 386 ILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYD 464 (481)
T ss_pred EEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccC
Confidence 9998754333221 12 134588999999999973 346899999999999999999999888764
No 16
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=100.00 E-value=2.7e-36 Score=293.47 Aligned_cols=158 Identities=50% Similarity=0.859 Sum_probs=149.7
Q ss_pred eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEe
Q 005250 485 FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVL 564 (706)
Q Consensus 485 ~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~ 564 (706)
+|+||||||+||.|+++||+.|+++|++|++|+.||++|+..|+++++.+.+++++.++++++||+.+.+|.+.++|+++
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~l 80 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFL 80 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEE
Confidence 59999999999999999999999999999999999999999999999988888889999999999999998789999999
Q ss_pred ccCccccCccccCCCCCCCC--CCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeCC-CccEEecCC
Q 005250 565 NIGSYMGGVDLWQNDSEHDD--DFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSS-PFPVQIDGE 641 (706)
Q Consensus 565 Ni~~~gGG~~l~~~~~~~~~--~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~-~~pvqvDGE 641 (706)
|||+|+||.++|+....... .|..++++||+|||+++.+.+|+++++.+..+++|++|+++|+|++++ ++|||||||
T Consensus 81 NIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~~~~hl~~~~~g~~~~~rl~Q~~~i~i~~~~~~~~~QvDGE 160 (161)
T PF00609_consen 81 NIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFRGSFHLGQIQAGLSSAKRLAQGRPIRIETKENKVPFQVDGE 160 (161)
T ss_pred ccccccCCcccccCCcccccccccccccccCceEEEEEEcCchhhhhhhhccCCceEeecCCEEEEEECCCceeEEeCCC
Confidence 99999999999998764332 578899999999999999999999999999999999999999999999 999999999
Q ss_pred C
Q 005250 642 P 642 (706)
Q Consensus 642 ~ 642 (706)
|
T Consensus 161 p 161 (161)
T PF00609_consen 161 P 161 (161)
T ss_pred C
Confidence 7
No 17
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=7.8e-33 Score=310.55 Aligned_cols=309 Identities=16% Similarity=0.158 Sum_probs=226.3
Q ss_pred CCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC------CCCeEEEEcCchhHHHHHHH
Q 005250 333 DARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF------QYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~------~~~~Ilv~GGDGTV~~VLn~ 405 (706)
..++++|||||.||++++.+.++.+..+|..+.+ +++..|+.+++|.++++++ .++.||++|||||+|+|+|+
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNG 237 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNG 237 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHH
Confidence 4689999999999999999999999999987766 7777788899999887542 35789999999999999999
Q ss_pred HHhcCC----------------------------------------------------------------------CCCC
Q 005250 406 IEKRNF----------------------------------------------------------------------ESPP 415 (706)
Q Consensus 406 L~~~~~----------------------------------------------------------------------~~~p 415 (706)
|..... ...+
T Consensus 238 L~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (601)
T PLN02204 238 YLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERF 317 (601)
T ss_pred HhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCc
Confidence 973210 1357
Q ss_pred CEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeeccch
Q 005250 416 PVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGCD 495 (706)
Q Consensus 416 pvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~siG~D 495 (706)
+|||||+|||||||+++... .++.+.+..|..+..+.||..+|.-..... ........+||+|.+|+||+
T Consensus 318 ~lGIIPaGSgN~~a~~~~g~---------~dp~taa~~Ii~G~~~~lDig~V~~~~~~~-~~~~~~~~ryf~s~ag~Gf~ 387 (601)
T PLN02204 318 RFGIIPAGSTDAIVMCTTGE---------RDPVTSALHIILGRRVCLDIAQVVRWKTTS-TSEIEPYVRYAASFAGYGFY 387 (601)
T ss_pred eEEEECCccHHHHHHHccCC---------CCHHHHHHHHHhCCCeEeeEEEEecccccc-cccccccceEEEEEeecchH
Confidence 89999999999999998632 357778888999999999988775321110 00001234899999999999
Q ss_pred hhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCc---------------e--
Q 005250 496 AKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKD---------------S-- 558 (706)
Q Consensus 496 A~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~---------------~-- 558 (706)
|+|+.+.++ +|++|+++|..++++.++. ...+.++|.+|+...+.... +
T Consensus 388 gdVi~esek----------~R~mG~~rY~~~g~k~~~~----~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c 453 (601)
T PLN02204 388 GDVISESEK----------YRWMGPKRYDYAGTKVFLK----HRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVC 453 (601)
T ss_pred HHHHHHhhh----------hcccchHHHHHHHHHHHHh----CCCceEEEEECCeEeeecccccccccccccccccchhh
Confidence 999977543 4568999999999999974 56789999999887553110 0
Q ss_pred -eEEEEeccCc--------------------cccCcc-----ccCC--CCCCCCCCCccccCCCeEEEEEEeCccc----
Q 005250 559 -EGLIVLNIGS--------------------YMGGVD-----LWQN--DSEHDDDFSPQSMHDKVLEVVCVCGAWH---- 606 (706)
Q Consensus 559 -~~i~v~Ni~~--------------------~gGG~~-----l~~~--~~~~~~~f~~~~~~DG~LeVv~v~~~~~---- 606 (706)
..+.|+|.++ +-|++. +.+. ....+.....+.++||.|+|+.+....+
T Consensus 454 ~~~c~Vcn~~~~~~~~~~~p~~~~~~~~W~~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L 533 (601)
T PLN02204 454 RTNCSVCNTKVSTNSPSTTPNSCPEETRWLRSKGRFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYL 533 (601)
T ss_pred hhheeeecccccccccccccccccccccceeecCceEEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHH
Confidence 1366777541 112221 1111 0001112223578999999999987543
Q ss_pred --chhhhh-c----ccCceEEEEecEEEEEeC-CCccEEecCCCCCCceEEEEEEcCceEEEEeCCC
Q 005250 607 --LGKLQV-G----LSQARRLAQGKVIRIHSS-SPFPVQIDGEPFIQQAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 607 --l~~l~~-g----~~~~~rl~q~~~i~I~~~-~~~pvqvDGE~~~~~P~~I~I~~~~~~~ml~~~~ 665 (706)
+.++.. + ..+.++++++++++|+.. ...++++|||+....|++++|.++.+.+++..++
T Consensus 534 ~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~~v~v~V~~~al~lfa~g~e 600 (601)
T PLN02204 534 WHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFGDESVWNLDGEIFQAHQLSAQVFRGLVNLFASGPE 600 (601)
T ss_pred HHHHHHHhhcCccCCCCcEEEEEeeEEEEEECCCCceEEeCCCcCCCccEEEEEEcCeeEEEecCCC
Confidence 222221 2 124588999999999975 5678999999999999999999999999987653
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-25 Score=245.01 Aligned_cols=292 Identities=19% Similarity=0.228 Sum_probs=210.2
Q ss_pred CCCcEEEEEcCCcCCCChHHHHH-HHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHH
Q 005250 333 DARPLLVFINAKSGGQLGHYLRR-RLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~-~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
..+++|||+||++|.+++.+++. .++.+|..+.+ |++..|++|.||.++++.. .++-|+++||||+++||||||.
T Consensus 178 r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl 257 (579)
T KOG1116|consen 178 RPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLL 257 (579)
T ss_pred CCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHhhhccc
Confidence 46899999999999999987654 57888888887 9999999999999999997 4688999999999999999998
Q ss_pred hcCC---CCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccc
Q 005250 408 KRNF---ESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSK 484 (706)
Q Consensus 408 ~~~~---~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~ 484 (706)
.+.. ....|||+||+||||+||.++.|-.|+. -.+...+ .+.++....+|.-.+..... ...
T Consensus 258 ~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~-----~~~~a~l-~iirg~~t~~dv~~v~~~~~---------~~~ 322 (579)
T KOG1116|consen 258 ERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPD-----LPLLATL-LIIRGRLTPMDVSVVEYAGK---------DRH 322 (579)
T ss_pred cccchhhHhcCceeEeecCCccHHHHHhhcccCcc-----cchHHHH-HHHccCCCchheeehhhccC---------cce
Confidence 7632 2468999999999999999999965531 1233333 45566677788655543221 237
Q ss_pred eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECC---e-----------
Q 005250 485 FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDG---K----------- 550 (706)
Q Consensus 485 ~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg---~----------- 550 (706)
|+++.+++|+.|+|..+.++.| ++|.+.|.+.++..++.. ..|+.++++.. +
T Consensus 323 fSfLs~~wGlIADiDI~SEk~R----------~mG~~Rf~lg~~~rl~~l----r~Y~gri~ylp~~~k~~~~~~~~~~~ 388 (579)
T KOG1116|consen 323 FSFLSAAWGLIADVDIESEKYR----------WMGPARFTLGAFLRLIQL----RKYKGRIEYLPAKGKSAEPLPAHELE 388 (579)
T ss_pred EEEEeeeeeeEEecccchHHHH----------hhcchhhhHHHHHHHHhc----cCCCceEEEecccccccCcccchhhc
Confidence 8999999999999998877554 478888888888777642 23333333321 0
Q ss_pred --------------------------------------------------------------EEEecC-ceeEEEEeccC
Q 005250 551 --------------------------------------------------------------GIEIPK-DSEGLIVLNIG 567 (706)
Q Consensus 551 --------------------------------------------------------------~i~l~~-~~~~i~v~Ni~ 567 (706)
....++ ++..+...-..
T Consensus 389 ~~~~~~~~~~~a~~~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~s 468 (579)
T KOG1116|consen 389 AADSEGCLSTHADTEPSEYPRLSVPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLS 468 (579)
T ss_pred cccccccccccccccccccccccccccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhh
Confidence 000111 12222112223
Q ss_pred ccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh---hhc---------ccCceEEEEecEEEEEeC-CCc
Q 005250 568 SYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL---QVG---------LSQARRLAQGKVIRIHSS-SPF 634 (706)
Q Consensus 568 ~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l---~~g---------~~~~~rl~q~~~i~I~~~-~~~ 634 (706)
+.++.+.+.|.+ .++||.++++.+.......++ ... ..+.+.+..++.++++.. .+.
T Consensus 469 y~~~d~~~~P~A----------~~~dg~I~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~~~~ 538 (579)
T KOG1116|consen 469 YLGADMKFAPAA----------RPDDGLIHLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVTPSG 538 (579)
T ss_pred hccCCccccccc----------ccCCCeEEEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEecCCc
Confidence 555566666554 578999999999875222221 111 123456778888888764 348
Q ss_pred cEEecCCCCCCceEEEEEEcCceEEEEeC
Q 005250 635 PVQIDGEPFIQQAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 635 pvqvDGE~~~~~P~~I~I~~~~~~~ml~~ 663 (706)
.+++|||.+...|..+++.|+-...+..+
T Consensus 539 ~~~vDGE~~~~ep~q~~v~p~~i~~~s~~ 567 (579)
T KOG1116|consen 539 YFAVDGELVPLEPLQVQVLPGLILTLSGR 567 (579)
T ss_pred eEEecccEeeccceeEEecccceeEEecc
Confidence 99999999999999999999999988875
No 19
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.89 E-value=1.4e-23 Score=203.99 Aligned_cols=158 Identities=44% Similarity=0.744 Sum_probs=131.9
Q ss_pred eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEe
Q 005250 485 FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVL 564 (706)
Q Consensus 485 ~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~ 564 (706)
+|+|++|+||||.|+.+++..|++.|.++++++.|+++|+..+++.++...++..+++++|++||++...+..+..++++
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~v~v~ 80 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAVL 80 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccCCCCccEEEEE
Confidence 58999999999999999999998888888888899999999999999754444445689999999988764357889999
Q ss_pred ccCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEE--EEeCCCccEEecCCC
Q 005250 565 NIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIR--IHSSSPFPVQIDGEP 642 (706)
Q Consensus 565 Ni~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~--I~~~~~~pvqvDGE~ 642 (706)
|+++||||+.+||.++.....|..++++||+|||+.+.+..++..+.....+.+++.|+++++ |++++++++|+|||+
T Consensus 81 N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~~~~~~~~~~~~~~~~~~v~~~~~~~v~i~i~~~~~~~~q~DGE~ 160 (160)
T smart00045 81 NIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVGLTGAMHMAQIRQVGLAGRRIAQCSEVRITIKTSKTIPMQVDGEP 160 (160)
T ss_pred CCCccccCcccccCCcccccccCCCCCCCceEEEEEEcCchhhhhhhhccCCCceeecCceEEEEEecCCceeeecCCCC
Confidence 999999999999875544445566789999999999998777665543345678999999999 667889999999996
No 20
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.86 E-value=3.3e-21 Score=179.58 Aligned_cols=100 Identities=60% Similarity=1.115 Sum_probs=83.5
Q ss_pred EEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCC-CCeEEEEcCchhHHHHHHHHHhcCCCC-CC
Q 005250 338 LVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQ-YFRVLVCGGDGTVAWVLNAIEKRNFES-PP 415 (706)
Q Consensus 338 lV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~-~~~Ilv~GGDGTV~~VLn~L~~~~~~~-~p 415 (706)
+||+||+||++++.+++++++..+.+.+++... +.+.+++.+++++.. ++.|+++|||||+++|+|+|.+..... .+
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~-~~~~~~~~~~~~~~~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~ 79 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLT-KKGPAAALVIFRDLPKFDRVLVCGGDGTVGWVLNALDKRELPLPEP 79 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEe-cCChHHHHHHHhhcCcCCEEEEEccccHHHHHHHHHHhcccccCCC
Confidence 589999999999999999999999998887665 356677777777764 458999999999999999998654221 28
Q ss_pred CEEEeeCCCcchhhhhcccCCCc
Q 005250 416 PVAVLPLGTGNDMSRVLQWGRGF 438 (706)
Q Consensus 416 pvgILPlGTGNDlAR~Lgwg~g~ 438 (706)
||||||+||||||||+|||+...
T Consensus 80 plgiiP~GTgNdfar~lgi~~~~ 102 (124)
T smart00046 80 PVAVLPLGTGNDLARSLGWGGGY 102 (124)
T ss_pred cEEEeCCCChhHHHHHcCCCCCc
Confidence 99999999999999999997543
No 21
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.84 E-value=3.9e-22 Score=210.64 Aligned_cols=124 Identities=20% Similarity=0.353 Sum_probs=103.2
Q ss_pred hhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcccccc---c
Q 005250 57 KKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQA---C 133 (706)
Q Consensus 57 ~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~---~ 133 (706)
.+.+++..+.+..|.|.+++|. |||||++|.++||| +| +||++|++|.++||++|++++...|+...+. +
T Consensus 33 GAlrqKnvhevk~HkF~aRFFK--qPTfCsHCkDFiwG---fg--KQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtD 105 (683)
T KOG0696|consen 33 GALRQKNVHEVKSHKFIARFFK--QPTFCSHCKDFIWG---FG--KQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTD 105 (683)
T ss_pred hhhhhcchhhhccceeeehhcc--CCchhhhhhhheec---cc--cCceeeeEEeehhhhhhcceEEEECCCCCCCCCCC
Confidence 4445556666779999999987 99999999999965 56 8889999999999999999999999886532 2
Q ss_pred ccccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 134 FSHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 134 ~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
.....|.|.. ++|.+++||++|+..+++..- ||++|.-|.++||.+|..++++.
T Consensus 106 dpr~kHkf~~------~tYssPTFCDhCGsLLyGl~H---QGmKC~~C~mNVH~rCv~nVPsl 159 (683)
T KOG0696|consen 106 DPRSKHKFKI------HTYSSPTFCDHCGSLLYGLIH---QGMKCDTCDMNVHHRCVENVPSL 159 (683)
T ss_pred Ccccccceee------eecCCCchhhhHHHHHHHHHh---cccccccccchHHHHHhhcCCcc
Confidence 2357899998 689999999999555544332 68999999999999999988765
No 22
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.82 E-value=6e-20 Score=172.34 Aligned_cols=99 Identities=32% Similarity=0.549 Sum_probs=67.2
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHH--hC-CC-CeEEEEcCchhHHHHHHHHHhcC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFS--NF-QY-FRVLVCGGDGTVAWVLNAIEKRN 410 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~--~~-~~-~~Ilv~GGDGTV~~VLn~L~~~~ 410 (706)
+++||+||+||++++. +++++.+|..... +++..++..+++.++.+ +. .. +.|+++|||||+++|+|++.+..
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~ 78 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSD 78 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTST
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcC
Confidence 5799999999999988 2555555443221 33333333444444333 33 33 69999999999999999998876
Q ss_pred CCCCCCEEEeeCCCcchhhhhcccCC
Q 005250 411 FESPPPVAVLPLGTGNDMSRVLQWGR 436 (706)
Q Consensus 411 ~~~~ppvgILPlGTGNDlAR~Lgwg~ 436 (706)
....||||+||+||||||||+||++.
T Consensus 79 ~~~~~~l~iiP~GT~N~~ar~lg~~~ 104 (130)
T PF00781_consen 79 REDKPPLGIIPAGTGNDFARSLGIPS 104 (130)
T ss_dssp SSS--EEEEEE-SSS-HHHHHTT--S
T ss_pred CCccceEEEecCCChhHHHHHcCCCC
Confidence 54468999999999999999999864
No 23
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=9.3e-19 Score=184.22 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=199.9
Q ss_pred CCCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhCC------CCeEEEEcCchhHHHHHH
Q 005250 332 QDARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNFQ------YFRVLVCGGDGTVAWVLN 404 (706)
Q Consensus 332 ~~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~~------~~~Ilv~GGDGTV~~VLn 404 (706)
...+.+||||||.+|+++|.+++..+..++--+.| +++..|+...+|.+..-+.+ ++-||++||||-.||+|+
T Consensus 156 ~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~ 235 (516)
T KOG1115|consen 156 ERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILN 235 (516)
T ss_pred cCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchhHHHHHh
Confidence 44688999999999999999999998887655545 77777888999988776653 577999999999999999
Q ss_pred HHHhcC-------C--------CCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEE
Q 005250 405 AIEKRN-------F--------ESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNI 469 (706)
Q Consensus 405 ~L~~~~-------~--------~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i 469 (706)
|+.-.- . ...|.+||||.|+.|.+.-+.. |. .+..+-.-.|.-+....+|...|.-
T Consensus 236 G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~---gt------~D~~TSAlHI~lG~~l~vDVctVht 306 (516)
T KOG1115|consen 236 GYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT---GT------RDPVTSALHIILGRKLFVDVCTVHT 306 (516)
T ss_pred hhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec---cC------CccccceeeeEeccceeeeeeeeee
Confidence 986431 1 2357899999999999876664 11 1222222345566777888776653
Q ss_pred ecccccccccccccceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEE--
Q 005250 470 REENSEYDQRKEQSKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEV-- 547 (706)
Q Consensus 470 ~~~~~~~g~~~~~~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~-- 547 (706)
.. .--||-.|.+|.||.++|..+.+++| ++|...|-.+|+|.+++. ..++-+|..
T Consensus 307 ~~---------kLiRysaSa~gYGFyGDvl~dSEKYR----------WmGp~RYDfsglKtflkH----~~YegeVsFlp 363 (516)
T KOG1115|consen 307 IE---------KLIRYSASAAGYGFYGDVLSDSEKYR----------WMGPKRYDFSGLKTFLKH----RSYEGEVSFLP 363 (516)
T ss_pred cc---------hheeeehhhhcccccchhhhhhhhhh----------ccCchhhhhHHHHHHHhc----cccceEEEecc
Confidence 21 23578999999999999999987655 477788999999999864 334444332
Q ss_pred -------------------CCeEEE-ecCceeEEEEeccCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccc
Q 005250 548 -------------------DGKGIE-IPKDSEGLIVLNIGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHL 607 (706)
Q Consensus 548 -------------------Dg~~i~-l~~~~~~i~v~Ni~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l 607 (706)
+.+.++ .-.+...|.+.++|....-..-| .+ ....++||-++++.++....+
T Consensus 364 a~sen~~qe~~~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrG-La-------P~T~LndGs~dLil~R~~SRF 435 (516)
T KOG1115|consen 364 AESENPCQEPCPSGASLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRG-LA-------PSTTLNDGSEDLILCRTKSRF 435 (516)
T ss_pred cccCCchhccccccCCcccCcchhhhhhhheeeeeEeeccccccCCCCC-cC-------CccccCCCccceeeeecccch
Confidence 111111 01235567778887754322111 11 113589999999999876543
Q ss_pred hhhhh-------c---ccCceEEEEecEEEEEeC-------CCccEEecCCCCCCc-eEEEEEEcCceEEEEe
Q 005250 608 GKLQV-------G---LSQARRLAQGKVIRIHSS-------SPFPVQIDGEPFIQQ-AGCLDITHHGQVFTLR 662 (706)
Q Consensus 608 ~~l~~-------g---~~~~~rl~q~~~i~I~~~-------~~~pvqvDGE~~~~~-P~~I~I~~~~~~~ml~ 662 (706)
-.++. + +-.-+..+.+.++..... ....+++|||...++ |+.|++.|+-+.++-.
T Consensus 436 ~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGeile~p~~lh~rlHpqLIslfgr 508 (516)
T KOG1115|consen 436 LFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEILEQPKPLHFRLHPQLISLFGR 508 (516)
T ss_pred HHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcchhcCCcceEEEechhhHhHhcc
Confidence 33321 1 112345556666666542 245699999999996 9999999887766543
No 24
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-14 Score=163.21 Aligned_cols=136 Identities=28% Similarity=0.529 Sum_probs=106.5
Q ss_pred CCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccccc---ccccccccceeee
Q 005250 68 SHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQ---ACFSHVKHHWSER 144 (706)
Q Consensus 68 ~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~---~~~~~~~H~W~~~ 144 (706)
..|.|.+.++. +|+||++|.++... .+++ -+||++|+.|++.||..|+..+.+.|.+... .....+.|+|+++
T Consensus 97 ~~~~~~~~~~~--~~~~c~~c~~~c~~-~~~~-~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~ 172 (634)
T KOG1169|consen 97 GDHVWRPKHLW--KPAYCFVCPKSCGS-CGVG-IKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKG 172 (634)
T ss_pred CceeccCCCCC--CCceEEeccccccc-hhhc-ccCceeeccccchHHHHHHhhcCcccccccccccccceeecCccccc
Confidence 47999999876 99999999998732 2221 1678999999999999999999887655432 2234688999985
Q ss_pred eecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCCCCCCCCceeCCCcccccc
Q 005250 145 WVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDLGPHRRLILSPLCVKENE 220 (706)
Q Consensus 145 ~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~~~~IlpP~~i~~~~ 220 (706)
......|..|.+.+..- .+.++++|.||++.+|++|......+ ||+|+|+++|+||+.+....
T Consensus 173 -------~~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~~h~~~~~~~~~~----~~~~~~~~~i~p~~~~~~~~ 235 (634)
T KOG1169|consen 173 -------NAGEAKCDQCLKSVKAD--QGLTGPRCGWCQIRVHDKCKSELSQE----CDLGELKDHILPPSTLRPAR 235 (634)
T ss_pred -------ccCCccchhhhcccccc--ccccccccceeeeeeecchHHHHhhh----ccChhhhhccCCceeeeccc
Confidence 24567888888874321 22368999999999999999977665 99999999999999987543
No 25
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=99.46 E-value=4e-15 Score=161.80 Aligned_cols=117 Identities=20% Similarity=0.360 Sum_probs=97.2
Q ss_pred cccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccccccc--------c-
Q 005250 64 NVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQAC--------F- 134 (706)
Q Consensus 64 ~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~--------~- 134 (706)
.+....|.....+.. .|+||.+|.++|||.- +||++|..||...|++|+.+++++|.++++.. .
T Consensus 140 d~~i~PH~l~vhSY~--~PtFCD~CGEmL~GLv-----rQGlKC~gCglNyHKRCa~kipNNCsG~r~rr~sa~~l~~~~ 212 (888)
T KOG4236|consen 140 DFQIRPHTLFVHSYK--APTFCDFCGEMLFGLV-----RQGLKCEGCGLNYHKRCAFKIPNNCSGVRKRRLSAVSLQPSR 212 (888)
T ss_pred ceeeecceeeeeccc--CchHHHHHHHHHHHHH-----HccccccCCCCcHhhhhhhcCCCCCCcccccCCCCCCCCCCC
Confidence 344567888777665 8999999999998753 46699999999999999999999997632110 0
Q ss_pred ---------------------c------------------------------ccccceeeeeecCCCCCCCCCcccccCC
Q 005250 135 ---------------------S------------------------------HVKHHWSERWVNMDDNAELSAFCFYCDE 163 (706)
Q Consensus 135 ---------------------~------------------------------~~~H~W~~~~~~~~~n~~~~~~C~~C~k 163 (706)
. .++|.+.+ |+|..++.|.+|+|
T Consensus 213 s~~l~~s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~v------HSY~rpTVCq~Ckk 286 (888)
T KOG4236|consen 213 SNRLNLSPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIV------HSYTRPTVCQYCKK 286 (888)
T ss_pred ccccccCCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEE------eeccCchHHHHHHH
Confidence 0 17899998 79999999999999
Q ss_pred CcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 164 PCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 164 ~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
.+.+.|++ |++|..|+.++|.+|...++++
T Consensus 287 LLkGL~rQ---GlqCkDCk~NcHkrCa~~v~~d 316 (888)
T KOG4236|consen 287 LLKGLFRQ---GLQCKDCKFNCHKRCAMKVPND 316 (888)
T ss_pred HHHHHHhc---CcccccCCcchhhhhhhhcccc
Confidence 99888775 5999999999999999999987
No 26
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-14 Score=161.98 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=99.8
Q ss_pred hccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccccc-c--c---
Q 005250 60 WKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQ-A--C--- 133 (706)
Q Consensus 60 ~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~-~--~--- 133 (706)
..+..+.+.+|.+.++.+. ||++|++|.+|+||. | +|||+|++|..++|++|+.++...|..... . .
T Consensus 149 ~~~kVhei~gH~F~aT~l~--Qpt~Cs~C~kFi~gL---~--kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~ 221 (694)
T KOG0694|consen 149 SQSKVHEIDGHKFGATSLR--QPTFCSWCQKFIWGL---R--KQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGF 221 (694)
T ss_pred ccceeEEeeCcEEEEeecc--Ccchhhhhhhheecc---C--CCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccc
Confidence 3444577889999999887 999999999999764 4 788999999999999999999998876542 1 1
Q ss_pred ----ccccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 134 ----FSHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 134 ----~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
...+||+++. +|+..++||++|+........ ++++|.-|.++||++|...+.+.
T Consensus 222 ~~~~~~~~Phrf~~------~~~q~ptFc~hCGs~L~r~~q---qGlkCs~Cg~n~H~~c~~~va~~ 279 (694)
T KOG0694|consen 222 LFEFTFRNPHRFVK------LNRQRPTFCDHCGSVLYRLRQ---QGLKCSTCGRNVHNRCVENLAPN 279 (694)
T ss_pred cccccccCCCcchh------hhccCccHHHhcchhhhhhcc---cCeeehhhhccccHHHHHhcccC
Confidence 1247899987 689999999999776654332 57999999999999999998765
No 27
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.98 E-value=2.7e-09 Score=113.29 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=103.6
Q ss_pred cceeeeccCCC--CCCcEEEEEcCCcCCCChH-HHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhCC--CCeEEEEcC
Q 005250 322 VKKYSLVDVPQ--DARPLLVFINAKSGGQLGH-YLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNFQ--YFRVLVCGG 395 (706)
Q Consensus 322 ~~~~~~~~~p~--~~~pllV~vNPkSG~~~g~-~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~~--~~~Ilv~GG 395 (706)
.++|.+..+|+ ..++++||+||.+..+... .+-.....+|.-+++ +++.+|+..++|..++..++ .+.|+|+||
T Consensus 46 aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~~Dii~VaGG 125 (535)
T KOG4435|consen 46 AQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQEDIIYVAGG 125 (535)
T ss_pred HHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccCCCeEEEecC
Confidence 35666666665 3578999999977654221 122334455555555 68888888999988888774 488999999
Q ss_pred chhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhh---eeecceEEEEecc
Q 005250 396 DGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAV---TMLDRWKVNIREE 472 (706)
Q Consensus 396 DGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~---~~lDrw~v~i~~~ 472 (706)
|||+++|+.|+.... ....||+++|+|--|--..+.-. .-+.+.|....+.+.+..+.+... ..+|. ...
T Consensus 126 DGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l~-~vfe~~d~V~h~~~a~~avikde~ksv~~fdv-----~~~ 198 (535)
T KOG4435|consen 126 DGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSMLP-SVFENSDDVRHACEAAMAVIKDEKKSVYAFDV-----TTE 198 (535)
T ss_pred CCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhch-hhhccchHHHHHHHHHHHHhcccccceEEEEe-----ccC
Confidence 999999999999764 45799999999999875444321 112211211223333333333222 33332 111
Q ss_pred cccccccccccceEEEEeeccchhhhhh
Q 005250 473 NSEYDQRKEQSKFMLNYLGIGCDAKVAY 500 (706)
Q Consensus 473 ~~~~g~~~~~~~~f~N~~siG~DA~Va~ 500 (706)
|. +...-|-+|-+++|.--+|-.
T Consensus 199 ----gs-~l~P~fgl~glswG~frdi~~ 221 (535)
T KOG4435|consen 199 ----GS-TLAPEFGLGGLSWGWFRDIED 221 (535)
T ss_pred ----CC-ccccccccCccchhhhhhhhh
Confidence 21 223446678888888666643
No 28
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.75 E-value=4.3e-09 Score=83.08 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=43.4
Q ss_pred CeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 70 HTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 70 H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
|.|+...+. +|++|.+|.++|||. + ++|++|+.|++++|++|..++...|..
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~g~---~--~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFS--KPTYCDVCGKFIWGL---G--KQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESS--STEB-TTSSSBECSS---S--SCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCC--CCCCCcccCcccCCC---C--CCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 899999875 999999999999762 2 677999999999999999999998864
No 29
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.62 E-value=2.4e-06 Score=90.48 Aligned_cols=246 Identities=14% Similarity=0.109 Sum_probs=133.6
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEec--cCChhH----HHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSA--SQGPEV----GLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~--t~~p~~----al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++.||+|+ |..++.++++++...|...++ +.+.. +....+ +++-..+.+.+.|+++|||||+.++++ +..
T Consensus 2 ~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~~~ 78 (277)
T PRK03708 2 RFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-KTK 78 (277)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-hcC
Confidence 47888887 555677888888887765543 33321 111111 110011113578999999999999999 654
Q ss_pred cCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEE
Q 005250 409 RNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLN 488 (706)
Q Consensus 409 ~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N 488 (706)
..+||..+|.||. +|...+.. +++.+.+.++.++.-....|-.+++... | . ...+.+|
T Consensus 79 ----~~~pi~gIn~G~l-GFl~~~~~----------~~~~~~l~~i~~g~~~~~~r~~l~~~~~----~--~-~~~~alN 136 (277)
T PRK03708 79 ----KDIPILGINMGTL-GFLTEVEP----------EETFFALSRLLEGDYFIDERIKLRVYIN----G--E-NVPDALN 136 (277)
T ss_pred ----CCCeEEEEeCCCC-CccccCCH----------HHHHHHHHHHHcCCceEEEeEEEEEEEC----C--e-EeEEEee
Confidence 3689999999998 88777752 2466777777766433222222222111 0 0 0112233
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-cC
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN-IG 567 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N-i~ 567 (706)
=+.+- |. .+ ..-..+++.+||+.+.- -..-+++|.. .+
T Consensus 137 dv~v~------------~~-~~---------------------------~~~~~~~v~idg~~~~~-~~gDGvIvsTptG 175 (277)
T PRK03708 137 EVVIL------------TG-IP---------------------------GKIIHLKYYVDGELADE-VRADGLIISTPTG 175 (277)
T ss_pred eEEEe------------cC-CC---------------------------CcEEEEEEEECCEEEEE-EecCEEEEeCCCc
Confidence 22111 00 00 11235788899988752 2456777765 22
Q ss_pred ccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeC---CCccEEecCCCCC
Q 005250 568 SYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSS---SPFPVQIDGEPFI 644 (706)
Q Consensus 568 ~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~---~~~pvqvDGE~~~ 644 (706)
|.+ ..+...+. +-+..++++.++...... ...+++-+...++|+|+.. .+..+.+||+...
T Consensus 176 STA--Y~lSaGGp----------Iv~p~~~~~~vtPi~p~~----l~~rplV~~~~~~i~l~~~~~~~~~~l~~DG~~~~ 239 (277)
T PRK03708 176 STA--YAMSAGGP----------FVDPRLDAILIAPLCPFK----LSSRPMVVPSSSRIDVKLLRTGREIILVIDGQYYE 239 (277)
T ss_pred hHH--HHhhCCCc----------ccCCCCCeEEEEeccccc----CCCCCEEECCCCEEEEEEecCCCcEEEEECCCeeE
Confidence 221 12222221 112234555555432111 1124555566667777753 3566899999754
Q ss_pred C----ceEEEEEEcCceEEEEeC
Q 005250 645 Q----QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 645 ~----~P~~I~I~~~~~~~ml~~ 663 (706)
. ..++|+..++...++...
T Consensus 240 ~l~~~~~v~i~~s~~~~~~~~~~ 262 (277)
T PRK03708 240 ELPPDTEITIKKSPRKTKFVRFS 262 (277)
T ss_pred ecCCCCEEEEEECCCeEEEEecC
Confidence 2 457777777766666543
No 30
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.60 E-value=2.6e-08 Score=78.63 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=39.8
Q ss_pred cceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 139 HHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 139 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
|+|+.+ ++..+++|++|++.+.+.. .+|++|.||++.+|.+|...++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~g~~---~~g~~C~~C~~~~H~~C~~~~~~~ 49 (53)
T PF00130_consen 1 HHFVPT------TFSKPTYCDVCGKFIWGLG---KQGYRCSWCGLVCHKKCLSKVPPS 49 (53)
T ss_dssp -EEEEE------ESSSTEB-TTSSSBECSSS---SCEEEETTTT-EEETTGGCTSSSB
T ss_pred CeEEEc------cCCCCCCCcccCcccCCCC---CCeEEECCCCChHhhhhhhhcCCC
Confidence 889984 7888999999999996532 368999999999999999998876
No 31
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.52 E-value=3.8e-08 Score=76.42 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=43.8
Q ss_pred CeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccC
Q 005250 70 HTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDC 126 (706)
Q Consensus 70 H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~C 126 (706)
|.|....+. +|++|.+|.+.||+. + .++++|+.|++++|++|..++...|
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~~~---~--~~~~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFF--KPTFCDVCRKSIWGL---F--KQGLRCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCC--CCCChhhcchhhhcc---c--cceeEcCCCCCchhhhhhccCCCCC
Confidence 889998765 899999999999863 1 5669999999999999999998876
No 32
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.43 E-value=2.6e-05 Score=83.89 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=132.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHH-HhC--CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELF-SNF--QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~-~~~--~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
++++++|+|| |..+..+++.++...|....+ +.+..+.....+...+ ... ..+.|+++|||||+..+++.+..
T Consensus 3 ~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~~- 79 (305)
T PRK02645 3 LKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLAP- 79 (305)
T ss_pred cCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhcc-
Confidence 5789999999 555556677777777754432 2222221111111111 111 35789999999999999999864
Q ss_pred CCCCCCCEEEeeC-CCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccc----cccccc
Q 005250 410 NFESPPPVAVLPL-GTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQ----RKEQSK 484 (706)
Q Consensus 410 ~~~~~ppvgILPl-GTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~----~~~~~~ 484 (706)
..+||..|.+ |+-.=|+..-.. ... .++++++.++.-....|..+++.... .+. ......
T Consensus 80 ---~~~pv~gin~~G~lGFL~~~~~~---------~~~-~~~l~~i~~g~~~i~~r~~L~~~~~~--~~~~~~~~~~~~~ 144 (305)
T PRK02645 80 ---HDIPILSVNVGGHLGFLTHPRDL---------LQD-ESVWDRLQEDRYAIERRMMLQARVFE--GDRSNEEPVSESY 144 (305)
T ss_pred ---CCCCEEEEecCCcceEecCchhh---------cch-HHHHHHHHcCCceEEEeeEEEEEEEe--CCcccccccccce
Confidence 3578888988 765544432110 012 56788888876555555555443210 000 000112
Q ss_pred eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEe
Q 005250 485 FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVL 564 (706)
Q Consensus 485 ~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~ 564 (706)
+.+|=+.+. |.. +. +-....+++.+||+.+.- -..-+|+|+
T Consensus 145 ~AlNev~i~------------~~~-~~-------------------------~~~~~~~~v~id~~~~~~-~~gDGlIVs 185 (305)
T PRK02645 145 YALNDFYLK------------PAS-ED-------------------------RSPTCILELEIDGEVVDQ-YQGDGLIVS 185 (305)
T ss_pred EEEeeEEEe------------ccC-cc-------------------------cccceEEEEEECCEEEEE-EecCEEEEe
Confidence 344433221 000 00 001135788899988752 246678886
Q ss_pred c-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeCC----CccEEec
Q 005250 565 N-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSS----PFPVQID 639 (706)
Q Consensus 565 N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~----~~pvqvD 639 (706)
. .+|.+ ..+...+. +-+..++++.++...... ...+++-+....+|+|+... +..+.+|
T Consensus 186 TPtGSTA--YslSAGGP----------Iv~P~~~~~~vtPi~ph~----l~~rplVlp~~~~i~i~~~~~~~~~~~l~~D 249 (305)
T PRK02645 186 TPTGSTA--YTMAAGGP----------ILHPGIDAIIVTPICPMS----LSSRPIVIPPGSRVVIWPLGDYDLNIKLWKD 249 (305)
T ss_pred cCCChhh--hhhhcCCc----------ccCCCCCeEEEEecCccc----ccCCCEEECCCCEEEEEEcCCCCCcEEEEEC
Confidence 5 22211 12222221 112223455554421111 11345556666778887532 3458999
Q ss_pred CCCCCC----ceEEEEEEcCceEEEEe
Q 005250 640 GEPFIQ----QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 640 GE~~~~----~P~~I~I~~~~~~~ml~ 662 (706)
|..... ..++|+.......++..
T Consensus 250 G~~~~~l~~~~~i~i~~s~~~~~~v~~ 276 (305)
T PRK02645 250 GVLATSIWPGQRCVIQKARHPAKFIIL 276 (305)
T ss_pred CCcceecCCCCEEEEEECCCceEEEEe
Confidence 996532 33566666655555443
No 33
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.41 E-value=1.1e-07 Score=73.36 Aligned_cols=49 Identities=33% Similarity=0.683 Sum_probs=42.1
Q ss_pred CeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccC
Q 005250 70 HTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDC 126 (706)
Q Consensus 70 H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~C 126 (706)
|.|....+. +|+||++|.+.|++.. ++++|..|++++|++|+.++...|
T Consensus 1 H~~~~~~~~--~~~~C~~C~~~i~~~~------~~~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFK--KPTKCCVCRKSIWGSF------QGLRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccC--CCCCccccccccCcCC------CCcCCCCCCchHHHHHHhhcCCCC
Confidence 788888764 8999999999997532 359999999999999999998776
No 34
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.36 E-value=2.1e-07 Score=72.18 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=41.3
Q ss_pred cceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 139 HHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 139 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
|+|... ++..+++|.+|++.+.+. ..++++|.||++.+|.+|..+++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~~~---~~~~~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T cd00029 1 HRFVRK------SFFKPTFCDVCRKSIWGL---FKQGLRCSWCKVKCHKKCADKVPPS 49 (50)
T ss_pred CccEEe------eCCCCCChhhcchhhhcc---ccceeEcCCCCCchhhhhhccCCCC
Confidence 788884 677789999999988753 2378999999999999999988754
No 35
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.34 E-value=4.5e-05 Score=81.46 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=130.9
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHH-----H--HHhC--CCCeEEEEcCchhHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLE-----L--FSNF--QYFRVLVCGGDGTVAWVL 403 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~-----l--~~~~--~~~~Ilv~GGDGTV~~VL 403 (706)
++.++||.|+.. ....++..++...|...++ +.+.. .....+. . ..+. ..+.|++.|||||+-.++
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~aa 80 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVIVEQ--QIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGAA 80 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEEEec--chhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHHH
Confidence 677999999844 4566778888877765543 22221 1111100 0 0112 347899999999999999
Q ss_pred HHHHhcCCCCCCCEEEeeCCCcc-hhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccc
Q 005250 404 NAIEKRNFESPPPVAVLPLGTGN-DMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQ 482 (706)
Q Consensus 404 n~L~~~~~~~~ppvgILPlGTGN-DlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~ 482 (706)
..+... .+.|||.++|| +|...+.. +++.+.++++.++.-..-+|..+++.-.. .+ ....
T Consensus 81 ~~~~~~------~~Pilgin~G~lGFl~~~~~----------~~~~~~l~~i~~g~~~i~~r~~L~~~v~~--~~-~~~~ 141 (292)
T PRK03378 81 RVLARY------DIKVIGINRGNLGFLTDLDP----------DNALQQLSDVLEGHYISEKRFLLEAQVCR--HG-QQKR 141 (292)
T ss_pred HHhcCC------CCeEEEEECCCCCcccccCH----------HHHHHHHHHHHcCCceEEEEEEEEEEEEe--CC-ceEE
Confidence 887542 35578889999 77666642 35667777777665433333333322110 00 0001
Q ss_pred cceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEE
Q 005250 483 SKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLI 562 (706)
Q Consensus 483 ~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~ 562 (706)
..+.+|=+.+- |. ...| -..+++.+||+.+.- ...-+++
T Consensus 142 ~~~aLNdvvi~------------~~------------~~~~----------------~i~~~v~idg~~~~~-~~~DGlI 180 (292)
T PRK03378 142 ISTAINEVVLH------------PG------------KVAH----------------MIEFEVYIDDNFAFS-QRSDGLI 180 (292)
T ss_pred eEEEEEEEEEc------------cC------------CCcc----------------EEEEEEEECCEEEEE-EEccEEE
Confidence 11333332220 00 0011 126788899987552 2456676
Q ss_pred Eec--c-Ccc---ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC---C
Q 005250 563 VLN--I-GSY---MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS---S 632 (706)
Q Consensus 563 v~N--i-~~~---gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~---~ 632 (706)
|.. . ..| +||--+.|.. +++.++.. .|. ...+++-+....+|+|+.. .
T Consensus 181 vsTptGSTAYslSAGGPii~P~~-----------------~~~~itPI~Phs-----l~~rplVl~~~~~i~i~~~~~~~ 238 (292)
T PRK03378 181 ISTPTGSTAYSLSAGGPILTPSL-----------------DAITLVPMFPHT-----LSARPLVIDSSSTIRLKFSPNRS 238 (292)
T ss_pred EeCCCchHHhHhhcCCceeCCCC-----------------CeEEEEeccccc-----CCCCCEEECCCCEEEEEEccCCC
Confidence 654 2 335 6665555542 34444432 221 1124555556667777663 3
Q ss_pred CccEEecCCCCC-C---ceEEEEEEcCceEEEE
Q 005250 633 PFPVQIDGEPFI-Q---QAGCLDITHHGQVFTL 661 (706)
Q Consensus 633 ~~pvqvDGE~~~-~---~P~~I~I~~~~~~~ml 661 (706)
...+.+||.... . ..+.|+..++...++-
T Consensus 239 ~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~ 271 (292)
T PRK03378 239 DLEISCDSQIALPIQPGEEVLIRRSDYHLNLIH 271 (292)
T ss_pred cEEEEECCceEEEcCCCcEEEEEECCCEEEEEE
Confidence 466899998642 2 3466666666555543
No 36
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.24 E-value=6.9e-07 Score=68.77 Aligned_cols=48 Identities=27% Similarity=0.648 Sum_probs=40.2
Q ss_pred cceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 139 HHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 139 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
|+|... ++..+++|.+|++.+.+.+ ++++|.||++.+|.+|...++..
T Consensus 1 H~~~~~------~~~~~~~C~~C~~~i~~~~----~~~~C~~C~~~~H~~C~~~v~~~ 48 (49)
T smart00109 1 HHFVER------TFKKPTKCCVCRKSIWGSF----QGLRCSWCKVKCHKKCAEKVPQP 48 (49)
T ss_pred CceEEe------ccCCCCCccccccccCcCC----CCcCCCCCCchHHHHHHhhcCCC
Confidence 788874 5677899999999987643 57999999999999999988753
No 37
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.18 E-value=0.0003 Score=73.85 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=124.0
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESP 414 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ 414 (706)
++.|+.+|. +.+..+++...|...+. ..... ... ......+.|++.|||||+=.++..+ .
T Consensus 2 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~--~~~-----~~~~~~d~vi~iGGDGT~L~a~~~~-------~ 62 (256)
T PRK14075 2 KLGIFYREE-----KEKEAKFLKEKISKEHEVVEFCE--ASA-----SGKVTADLIIVVGGDGTVLKAAKKV-------G 62 (256)
T ss_pred EEEEEeCcc-----HHHHHHHHHHHHHHcCCeeEeec--ccc-----cccCCCCEEEEECCcHHHHHHHHHc-------C
Confidence 345554544 45677777777765542 11111 111 1112347899999999997777654 2
Q ss_pred CCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeeccc
Q 005250 415 PPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGC 494 (706)
Q Consensus 415 ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~siG~ 494 (706)
+||-=+..|+ ||. +...+ .+++.+++.++.++.-....|..+++.... ...+.+|=+.+.
T Consensus 63 ~Pilgin~G~-------lGf---l~~~~-~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~--------~~~~alNev~i~- 122 (256)
T PRK14075 63 TPLVGFKAGR-------LGF---LSSYT-LEEIDRFLEDLKNWNFREEKRWFLKIESEL--------GNHLALNDVTLE- 122 (256)
T ss_pred CCEEEEeCCC-------Ccc---ccccC-HHHHHHHHHHHHcCCcEEEEeeEEEEEEcC--------CcEEEEEEEEEe-
Confidence 4543344554 443 11111 135666777777765544444444432110 112333333221
Q ss_pred hhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-cCccccCc
Q 005250 495 DAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGV 573 (706)
Q Consensus 495 DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~ 573 (706)
|.. ...-..+++.+||+.+.. -..-+++|+. .+|.+ .
T Consensus 123 -----------~~~----------------------------~~~~~~~~v~i~~~~~~~-~~~DG~ivsTptGSTa--Y 160 (256)
T PRK14075 123 -----------RDP----------------------------SQKMVEIEVSFEDHSSMW-FFADGVVISTPTGSTA--Y 160 (256)
T ss_pred -----------cCC----------------------------CCcEEEEEEEECCEEEEE-EecCEEEEeCCCchHH--H
Confidence 000 011236788889876542 2456777765 22211 1
Q ss_pred cccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeCCCccEEecCCCCCCc-eEEEEE
Q 005250 574 DLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSSPFPVQIDGEPFIQQ-AGCLDI 652 (706)
Q Consensus 574 ~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~~~-P~~I~I 652 (706)
.+...+.. -.++-..+.++-+.. |.- ..+++-+.+.++|+|++.++..+++|||..... +++|++
T Consensus 161 ~lSaGGpi-------v~p~~~~l~ItPI~P--h~L-----~~rpiVlp~~~~I~I~~~~~~~l~iDGe~~~~~~~I~I~~ 226 (256)
T PRK14075 161 SLSLGGPI-------ILPNCEVFEITPIAP--QFL-----ATRSIVIPSNEKVTVESQRDINLIVDGVLVGKTNRITVKK 226 (256)
T ss_pred HhhCCCce-------eCCCCCeEEeeeeeh--hhc-----CCCceEcCCCCEEEEEECCceEEEECCCCcCCCcEEEEEE
Confidence 22222110 011112333333321 211 124444567889999988889999999998775 999999
Q ss_pred EcCceEEEEeC
Q 005250 653 THHGQVFTLRR 663 (706)
Q Consensus 653 ~~~~~~~ml~~ 663 (706)
.++...++.++
T Consensus 227 s~~~l~li~~~ 237 (256)
T PRK14075 227 SRRYVRILRPK 237 (256)
T ss_pred CCCEEEEEEcC
Confidence 99999988865
No 38
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.14 E-value=7.3e-07 Score=93.68 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 48 WIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 48 ~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
.-+..|||.++. ....+|.|.++.|+ +..+|.+|.+.|| |+| .|||+|-.|++.||++|+..+...|-
T Consensus 114 iyrrgarrwrkl-----y~~ngh~fqakr~n--rr~~c~ic~d~iw---glg--rqgyrcinckl~vhkkch~~v~~~cg 181 (593)
T KOG0695|consen 114 IYRRGARRWRKL-----YRANGHLFQAKRFN--RRAYCGICSDRIW---GLG--RQGYRCINCKLLVHKKCHGLVPLTCG 181 (593)
T ss_pred HHHhHHHHHHHH-----HhhcCcchhhhhhc--cceeeeechhhhh---hcc--cccceeecceeehhhhhcccccchhh
Confidence 344455664433 34459999999887 8899999999995 466 88899999999999999999998884
Q ss_pred c
Q 005250 128 C 128 (706)
Q Consensus 128 ~ 128 (706)
.
T Consensus 182 ~ 182 (593)
T KOG0695|consen 182 K 182 (593)
T ss_pred h
Confidence 3
No 39
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.99 E-value=0.00062 Score=72.92 Aligned_cols=251 Identities=18% Similarity=0.122 Sum_probs=126.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCC---hhHHHHHH--HhC--CCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQG---PEVGLELF--SNF--QYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~---p~~al~l~--~~~--~~~~Ilv~GGDGTV~~VLn~ 405 (706)
++.+.||+|+.. ..+.++++++...|....+ +.+..+.. +..+.... ... +.+.|++.|||||+..+++.
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~ 81 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAARA 81 (295)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHHH
Confidence 567999999865 3455677777776654432 22221111 11111110 111 35789999999999999988
Q ss_pred HHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccce
Q 005250 406 IEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKF 485 (706)
Q Consensus 406 L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~ 485 (706)
+.. ..+||--+.+|+-.=|+ .. + .+++.+++.++.++.-....|..+++.-.. .+. .....+
T Consensus 82 ~~~----~~~Pvlgin~G~lGFl~-~~---------~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~--~~~-~~~~~~ 143 (295)
T PRK01231 82 LAR----HNVPVLGINRGRLGFLT-DI---------R-PDELEFKLAEVLDGHYQEEERFLLEAEVRR--GGE-VIGQGD 143 (295)
T ss_pred hcC----CCCCEEEEeCCcccccc-cC---------C-HHHHHHHHHHHHcCCceEEEEEEEEEEEEE--CCc-EEeeee
Confidence 753 34565556666432111 11 1 135666677776665444444444432110 000 000113
Q ss_pred EEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec
Q 005250 486 MLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN 565 (706)
Q Consensus 486 f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N 565 (706)
.+|=+-+- |.. + ..-.++++.+||+.+.- -..-+|+|..
T Consensus 144 ALNevvi~------------~~~-~---------------------------~~~~~~~v~id~~~~~~-~~~DGlivsT 182 (295)
T PRK01231 144 ALNDVVLH------------PGK-S---------------------------TRMIEFELYIDGQFVCS-QRSDGLIVST 182 (295)
T ss_pred EEEEEEEc------------cCC-C---------------------------CcEEEEEEEECCEEEEE-EEcceEEEeC
Confidence 33333221 000 0 01236788899988752 2456787765
Q ss_pred -cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeCC----CccEEecC
Q 005250 566 -IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSS----PFPVQIDG 640 (706)
Q Consensus 566 -i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~----~~pvqvDG 640 (706)
..|.+ ..+...+. +-+..++++.++...... ...+++-+...++|+|+... ...+.+||
T Consensus 183 ptGSTA--Y~lSAGGp----------Iv~p~~~~~~itPI~ph~----l~~rpiVl~~~~~I~i~~~~~~~~~~~l~~DG 246 (295)
T PRK01231 183 PTGSTA--YALSGGGP----------IMHPKLDAIVLVPMFPHT----LSSRPIVVDGNSEIKIVISKDNRTYPRVSCDG 246 (295)
T ss_pred CCCchh--hhhhcCCc----------eecCCCCeEEEEecCCCc----cCCCCEEECCCCEEEEEEccCCCCceEEEeCC
Confidence 22211 12222211 112234555555422111 11345556666788887642 35689999
Q ss_pred CCCCC----ceEEEEEEcCceEEEE
Q 005250 641 EPFIQ----QAGCLDITHHGQVFTL 661 (706)
Q Consensus 641 E~~~~----~P~~I~I~~~~~~~ml 661 (706)
..... ..++|+..+....++-
T Consensus 247 ~~~~~l~~g~~i~i~~s~~~~~l~~ 271 (295)
T PRK01231 247 QNSVTLAPGDTVTIRKKPQKLRLIH 271 (295)
T ss_pred CceEecCCCCEEEEEECCCeEEEEE
Confidence 97432 4566776666665543
No 40
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.62 E-value=0.0076 Score=64.50 Aligned_cols=252 Identities=13% Similarity=0.054 Sum_probs=124.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChh-HHHH----HHHhC--CCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPE-VGLE----LFSNF--QYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~-~al~----l~~~~--~~~~Ilv~GGDGTV~~VLn~ 405 (706)
++.++||+|+.+ ....+++..+...|....+ +-+....... .+.+ -..+. ..+.|+++|||||+..+++.
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~ 82 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGRQ 82 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHHH
Confidence 467889988844 4456677777777755442 1222111000 0000 00122 35789999999999999998
Q ss_pred HHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccce
Q 005250 406 IEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKF 485 (706)
Q Consensus 406 L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~ 485 (706)
+.. ..+||-=+.+|+-.=|+. . + .+++.+.+.++.++.-..-.|..+.+.... .+. .....+
T Consensus 83 ~~~----~~~pilGIn~G~lGFL~~-~---------~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~--~~~-~~~~~~ 144 (291)
T PRK02155 83 LAP----YGVPLIGINHGRLGFITD-I---------P-LDDMQETLPPMLAGNYEEEERMLLEARVVR--DGE-PIFHAL 144 (291)
T ss_pred hcC----CCCCEEEEcCCCcccccc-C---------C-HHHHHHHHHHHHcCCceEEEeEEEEEEEEE--CCe-EEEeee
Confidence 764 244544456665432221 1 1 134666677776665443344433322100 000 000011
Q ss_pred EEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec
Q 005250 486 MLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN 565 (706)
Q Consensus 486 f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N 565 (706)
.+|=+.+ .+.....-..+++.+||+.+.- -..-+++|..
T Consensus 145 AlNev~v----------------------------------------~~~~~~~~~~~~v~i~~~~~~~-~~gDGlIVsT 183 (291)
T PRK02155 145 AFNDVVV----------------------------------------NRSGFSGMVELRVSVDGRFMYN-QRSDGLIVAT 183 (291)
T ss_pred eeeheee----------------------------------------ccCCCCceEEEEEEECCEEEEE-EecCeEEEEC
Confidence 2221111 0000011246788899988752 2456788765
Q ss_pred -cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeC--CCccEEecCCC
Q 005250 566 -IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSS--SPFPVQIDGEP 642 (706)
Q Consensus 566 -i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~--~~~pvqvDGE~ 642 (706)
.+|.+ ..+...+. +-+..++++.++...... ...+++-+...++|+|+.. .+..+.+||+.
T Consensus 184 PtGSTA--YslSaGGP----------Iv~p~~~~~~ltPI~p~~----l~~rpiVl~~~~~i~i~~~~~~~~~l~~DG~~ 247 (291)
T PRK02155 184 PTGSTA--YALSAGGP----------ILHPQLPGWVLVPIAPHT----LSNRPIVLPDDSEVAIQIVGGRDVSVNFDMQS 247 (291)
T ss_pred CCchhh--hhhhcCCc----------ccCCCCCeEEEEecCcCc----cCCCCEEECCCCEEEEEEcCCCcEEEEEcCCc
Confidence 22211 12222221 112234555555432111 1124555566667777664 35678999987
Q ss_pred CCC----ceEEEEEEcCceEEEEe
Q 005250 643 FIQ----QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 643 ~~~----~P~~I~I~~~~~~~ml~ 662 (706)
... ..+.|+.......++-+
T Consensus 248 ~~~l~~~d~i~i~~s~~~~~~~~~ 271 (291)
T PRK02155 248 LTSLELGDRIEVRRSPHTVRFLHP 271 (291)
T ss_pred ceeCCCCCEEEEEECCCeEEEEec
Confidence 642 34666666665555443
No 41
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.55 E-value=0.0099 Score=64.00 Aligned_cols=252 Identities=17% Similarity=0.161 Sum_probs=129.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHH-----H---------HHHHhC--CCCeEEEEcCc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVG-----L---------ELFSNF--QYFRVLVCGGD 396 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~a-----l---------~l~~~~--~~~~Ilv~GGD 396 (706)
++.+++|.|+ +.....++..++...|...++ +.+......... . ...... ..+.|++.|||
T Consensus 5 ~~~I~iv~~~--~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 82 (306)
T PRK03372 5 SRRVLLVAHT--GRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGD 82 (306)
T ss_pred ccEEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCC
Confidence 5679999987 444566777888877765442 222111000000 0 000111 34789999999
Q ss_pred hhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccc
Q 005250 397 GTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEY 476 (706)
Q Consensus 397 GTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~ 476 (706)
||+=.++..+.. ..+||--+.+|+-.=|+..- .+++.++++++.++.-....|-.+++.-.. .
T Consensus 83 GT~L~aar~~~~----~~~PilGIN~G~lGFL~~~~-----------~~~~~~~l~~i~~g~y~i~~R~~L~~~v~~--~ 145 (306)
T PRK03372 83 GTILRAAELARA----ADVPVLGVNLGHVGFLAEAE-----------AEDLDEAVERVVDRDYRVEERMTLDVTVRV--G 145 (306)
T ss_pred HHHHHHHHHhcc----CCCcEEEEecCCCceeccCC-----------HHHHHHHHHHHHcCCceEEEeeeEEEEEEE--C
Confidence 999988887654 34566667787743333211 135667777777765444333333222100 0
Q ss_pred cccccccceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecC
Q 005250 477 DQRKEQSKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPK 556 (706)
Q Consensus 477 g~~~~~~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~ 556 (706)
+. .....+.+|=+.+. |.. + ..-..+++.+||+.+.- .
T Consensus 146 g~-~~~~~~ALNdvvi~------------r~~-~---------------------------~~~~~~~v~idg~~~~~-~ 183 (306)
T PRK03372 146 GE-IVWRGWALNEASLE------------KAD-R---------------------------EGMLEVVLEVDGRPVSS-F 183 (306)
T ss_pred CE-EEeeeeEEEeEEee------------cCC-C---------------------------CcEEEEEEEECCEEEEE-E
Confidence 00 00011233322111 100 0 01135778899988752 2
Q ss_pred ceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC---
Q 005250 557 DSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS--- 631 (706)
Q Consensus 557 ~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~--- 631 (706)
..-+|+|+. ++|.+ ..+...+. +-+-.++++.++.. .|. ...+++-+....+|+|+..
T Consensus 184 ~~DGlIVsTPTGSTA--YslSAGGP----------Iv~P~~~~~~itPI~Ph~-----l~~RplVv~~~~~I~i~~~~~~ 246 (306)
T PRK03372 184 GCDGVLVSTPTGSTA--YAFSAGGP----------VVWPDLEALLVVPLNAHA-----LFARPLVVSPTSTVAVEILADT 246 (306)
T ss_pred ecCEEEEeCCCchHH--HHhhcCCc----------ccCCCCCeEEEEeccccc-----CCCCCeEECCCCEEEEEEecCC
Confidence 456788865 22221 12222221 11223455555542 221 1235566666777888764
Q ss_pred CCccEEecCCCCCC----ceEEEEEEcCceEEEEeC
Q 005250 632 SPFPVQIDGEPFIQ----QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 632 ~~~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~~ 663 (706)
....+.+||..... ..++|+..++...++-.+
T Consensus 247 ~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~ 282 (306)
T PRK03372 247 SDAVLWCDGRRSVDLPPGARVEVRRGATPVRLARLD 282 (306)
T ss_pred CcEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEeC
Confidence 35679999997532 456777766666655444
No 42
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.42 E-value=0.019 Score=61.30 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=123.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHH----HHHhC--CCCeEEEEcCchhHHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLE----LFSNF--QYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~----l~~~~--~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++.+.||+|+. . +..+++.++...|...++ +.+... ....+. -..+. ..+.|++.|||||+=.++..+
T Consensus 10 ~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~aa~~~ 84 (287)
T PRK14077 10 IKKIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEKE--SAEILDLPGYGLDELFKISDFLISLGGDGTLISLCRKA 84 (287)
T ss_pred CCEEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEecc--hhhhhcccccchhhcccCCCEEEEECCCHHHHHHHHHh
Confidence 57899999996 3 667788888877765543 222210 000000 00111 357899999999998888876
Q ss_pred HhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceE
Q 005250 407 EKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFM 486 (706)
Q Consensus 407 ~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f 486 (706)
... .+||-=+-+|+ ||. +...+ .+++.++++++.++.-..-.|-.+++.-.. .+. .....+.
T Consensus 85 ~~~----~~PilGIN~G~-------lGF---Lt~~~-~~~~~~~l~~i~~g~y~ie~r~~L~~~v~~--~~~-~~~~~~A 146 (287)
T PRK14077 85 AEY----DKFVLGIHAGH-------LGF---LTDIT-VDEAEKFFQAFFQGEFEIEKPYMLSVFLEK--KQG-KILEKLA 146 (287)
T ss_pred cCC----CCcEEEEeCCC-------ccc---CCcCC-HHHHHHHHHHHHcCCCeEEEEEEEEEEEEe--CCc-eEEEEEE
Confidence 542 34544355665 332 22111 134566677766654322222222221100 000 0000111
Q ss_pred EEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-
Q 005250 487 LNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN- 565 (706)
Q Consensus 487 ~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N- 565 (706)
+|=+.+ .|. ....-..+++.+||+.++- -..-+|+|..
T Consensus 147 lNevvi------------~~~----------------------------~~~~~~~~~v~id~~~~~~-~~~DGlIVSTP 185 (287)
T PRK14077 147 FNDVVI------------SKN----------------------------NQASMAHIEAFLNEKYFNE-YFGDGVIVATP 185 (287)
T ss_pred eeeeee------------ccC----------------------------CCccEEEEEEEECCEEEEE-EEcCEEEEeCC
Confidence 221100 000 0011236788899988752 2456788865
Q ss_pred cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeCCCccEEecCCCCC
Q 005250 566 IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSSSPFPVQIDGEPFI 644 (706)
Q Consensus 566 i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~ 644 (706)
.+|.+ ..+...+. +-+..++++.+... .|. ...+++-+....+|+|+...+..+.+||....
T Consensus 186 TGSTA--YslSAGGP----------Iv~P~~~~~~ltPI~Phs-----l~~rpiVl~~~~~I~i~~~~~~~l~~DG~~~~ 248 (287)
T PRK14077 186 AGSTA--YNMSANGP----------IIYPLSQVFILTPVCSHS-----LTQRPIVLPKGFEVEFKTKSDCILCIDGQDRY 248 (287)
T ss_pred CchhH--hHhhcCCc----------ccCCCCCeEEEEeccccc-----ccCCCEEECCCCEEEEEECCCEEEEEcCCeeE
Confidence 22221 22222221 11123455555542 221 12345555566788887777888999999753
Q ss_pred -C---ceEEEEEEcCceEEE
Q 005250 645 -Q---QAGCLDITHHGQVFT 660 (706)
Q Consensus 645 -~---~P~~I~I~~~~~~~m 660 (706)
. ..++|+..+....++
T Consensus 249 ~l~~~d~i~I~~s~~~~~lv 268 (287)
T PRK14077 249 KMNDFKSIKVGLSDKNVALI 268 (287)
T ss_pred ecCCCCEEEEEECCCEEEEE
Confidence 2 457777776666554
No 43
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.36 E-value=3.5e-05 Score=83.33 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=49.4
Q ss_pred cccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 64 NVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 64 ~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
..|...|.|.....+ .||||.+|...|.|.. -||++|+.|.+.||.+|...++.-|-.
T Consensus 105 Ddpr~kHkf~~~tYs--sPTFCDhCGsLLyGl~-----HQGmKC~~C~mNVH~rCv~nVPslCG~ 162 (683)
T KOG0696|consen 105 DDPRSKHKFKIHTYS--SPTFCDHCGSLLYGLI-----HQGMKCDTCDMNVHHRCVENVPSLCGT 162 (683)
T ss_pred CCcccccceeeeecC--CCchhhhHHHHHHHHH-----hcccccccccchHHHHHhhcCCcccCC
Confidence 346779999998766 8999999999887653 356999999999999999999998854
No 44
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.36 E-value=0.026 Score=59.57 Aligned_cols=240 Identities=13% Similarity=0.124 Sum_probs=120.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCC
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFES 413 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~ 413 (706)
|+.+.+|+|+.. .+.++..++..+|...++ +... . . .+.+.|++.|||||+=.++..+... .
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~-~~~~-~-~---------~~~D~vi~lGGDGT~L~a~~~~~~~---~ 63 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYGF-TVVD-H-P---------KNANIIVSIGGDGTFLQAVRKTGFR---E 63 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCCC-EEEc-C-C---------CCccEEEEECCcHHHHHHHHHhccc---C
Confidence 567888888766 556788888887766554 2111 1 0 1346899999999997777765431 1
Q ss_pred CCCEEEeeC-CCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeec
Q 005250 414 PPPVAVLPL-GTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGI 492 (706)
Q Consensus 414 ~ppvgILPl-GTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~si 492 (706)
.+||-=+.+ |+ ||. +...+ .+++.+.+.++.++.-..-.+..+++... + . ...+.+|=+.+
T Consensus 64 ~~pilgIn~~G~-------lGF---L~~~~-~~~~~~~l~~i~~g~~~~~~r~~l~~~v~----~--~-~~~~alNevvi 125 (264)
T PRK03501 64 DCLYAGISTKDQ-------LGF---YCDFH-IDDLDKMIQAITKEEIEVRKYPTIEVTVD----G--S-TSFYCLNEFSI 125 (264)
T ss_pred CCeEEeEecCCC-------CeE---cccCC-HHHHHHHHHHHHcCCcEEEEeeeEEEEEC----C--c-cceEEEEEEEE
Confidence 345322444 43 332 11111 13566667776665433323322222110 0 0 01123332222
Q ss_pred cchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-cCcccc
Q 005250 493 GCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN-IGSYMG 571 (706)
Q Consensus 493 G~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gG 571 (706)
..+ ...-..+++.+||+.+.- -..-+++|+. .+|.+
T Consensus 126 -~~~----------------------------------------~~~~~~~~v~id~~~~~~-~~~DGlIVsTPtGSTA- 162 (264)
T PRK03501 126 -RSS----------------------------------------IIKTFVIDVYIDDLHFET-FRGDGMVVSTPTGSTA- 162 (264)
T ss_pred -cCC----------------------------------------CCceEEEEEEECCEEeEE-EecCEEEEeCCCchHH-
Confidence 000 001235788899987752 2466788865 22221
Q ss_pred CccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh-hhcccCceEEEEecEEEEEeCC----CccEEecCCCCCC-
Q 005250 572 GVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL-QVGLSQARRLAQGKVIRIHSSS----PFPVQIDGEPFIQ- 645 (706)
Q Consensus 572 G~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l-~~g~~~~~rl~q~~~i~I~~~~----~~pvqvDGE~~~~- 645 (706)
..+...+. +-+..++++.++....+... ...+.+++-+....+|+|+... ...+.+||+....
T Consensus 163 -Y~lSAGGP----------Iv~P~~~~~~itPI~P~~~~~~~~l~rpiVl~~~~~I~i~~~~~~~~~~~l~~DG~~~~l~ 231 (264)
T PRK03501 163 -YNKSVRGA----------VVDPLIPCFQVSELASLNNNTYRTLGSPFILSHERKLTLKIVQDGNDYPIIGMDNEALSIK 231 (264)
T ss_pred -HHhhcCCc----------ccCCCCCeEEEEeccccCccccccCCCCEEECCCCEEEEEEecCCCCcEEEEEeCCEEEcC
Confidence 12222221 11223455555543211111 1122356666677788887642 3457899997543
Q ss_pred --ceEEEEEEcCceEEEEeC
Q 005250 646 --QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 646 --~P~~I~I~~~~~~~ml~~ 663 (706)
..+.|+..++...++-.+
T Consensus 232 ~~d~i~I~~s~~~~~lv~~~ 251 (264)
T PRK03501 232 HVEKIDIRLSDKQIKTVKLK 251 (264)
T ss_pred CCCEEEEEECCCEEEEEEeC
Confidence 346666666665555443
No 45
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.25 E-value=0.042 Score=58.87 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=122.5
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHH----------HH---HhC--CCCeEEEEcCchhH
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLE----------LF---SNF--QYFRVLVCGGDGTV 399 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~----------l~---~~~--~~~~Ilv~GGDGTV 399 (706)
.+.||+|+ +.....++.+++...|...++ +.+... ....+. .+ .+. ..+.|++.|||||+
T Consensus 2 ~igii~~~--~~~~~~~~~~~i~~~l~~~g~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 2 KIAIFGQT--YQESASPYIQELFDELEERGAEVLIEEK--FLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTF 77 (292)
T ss_pred EEEEEeCC--CCHHHHHHHHHHHHHHHHCCCEEEEecc--hhhhhccccccccccccccchhhcccCCCEEEEECCcHHH
Confidence 47788887 444566778888877765543 222210 000000 00 122 34789999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEeccccccccc
Q 005250 400 AWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQR 479 (706)
Q Consensus 400 ~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~ 479 (706)
=.++..+.. ..+||-=+-+|+ ||. +...+ .+++.+++.++.++.-..-.|-.+++... +..
T Consensus 78 L~aa~~~~~----~~~PilGIN~G~-------lGF---Lt~~~-~~~~~~~l~~i~~g~~~i~~r~~L~~~~~----~~~ 138 (292)
T PRK01911 78 LRTATYVGN----SNIPILGINTGR-------LGF---LATVS-KEEIEETIDELLNGDYTIEERSLLQLESN----PKL 138 (292)
T ss_pred HHHHHHhcC----CCCCEEEEecCC-------CCc---ccccC-HHHHHHHHHHHHcCCceEEEEeeEEEEEc----CCc
Confidence 888887754 245544466666 443 12111 13566777777766543333333332211 000
Q ss_pred ccccceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCcee
Q 005250 480 KEQSKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSE 559 (706)
Q Consensus 480 ~~~~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~ 559 (706)
.....+.+|=+.+. |... ..-..+++.+||+.+.- -..-
T Consensus 139 ~~~~~~alNdvvi~------------r~~~----------------------------~~~i~~~v~idg~~~~~-~~~D 177 (292)
T PRK01911 139 FGELNFALNEIAIL------------KRDT----------------------------SSMITVHTYLNGEYLNS-YWAD 177 (292)
T ss_pred ceeeeEEEEEEEEe------------cCCC----------------------------CcEEEEEEEECCEEEEE-Eeec
Confidence 00011233332221 1000 01135788899987652 2466
Q ss_pred EEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC---CCc
Q 005250 560 GLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS---SPF 634 (706)
Q Consensus 560 ~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~---~~~ 634 (706)
+|+|.. .+|.+ ..+...+. +-+..++++.++.. .|.- ..+++-+....+|+|+.. ...
T Consensus 178 GlIVsTPTGSTA--YslSAGGP----------Iv~P~~~~~~ltPI~Ph~l-----~~RplVl~~~~~I~i~~~~~~~~~ 240 (292)
T PRK01911 178 GLIVATPTGSTG--YSLSCGGP----------IIVPDAKSFVITPIAPHNL-----NVRPLVIPDDTEITLEVESRSDNF 240 (292)
T ss_pred eeEECCCCcHHH--HHhhCCCc----------ccCCCCCEEEEEecccCcc-----CCCCEEECCCCEEEEEEecCCCce
Confidence 788865 22211 12222221 11223445555442 2211 124555555667777653 245
Q ss_pred cEEecCCCCCC---ceEEEEEEcCceEEEEe
Q 005250 635 PVQIDGEPFIQ---QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 635 pvqvDGE~~~~---~P~~I~I~~~~~~~ml~ 662 (706)
.+.+||..+.. ..++|+..+....++-.
T Consensus 241 ~l~~DG~~~~l~~gd~v~i~~s~~~~~lv~~ 271 (292)
T PRK01911 241 LVSLDSRSETVDNGTELTIKKADFTIKLVEL 271 (292)
T ss_pred EEEEeCCeeecCCCCEEEEEECCCeEEEEEe
Confidence 68899998643 34666666666555443
No 46
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.25 E-value=0.0041 Score=66.33 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecce
Q 005250 386 QYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRW 465 (706)
Q Consensus 386 ~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw 465 (706)
..+.|++.|||||+-.++..+.. ..+||-=+++||-|=|+.. .. +++.+.+.++.++....-+|.
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~lgfl~~~-~~----------~~~~~~l~~~~~g~~~~~~r~ 140 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGTLGFLTEF-EP----------EDIEEALEKILAGEYSIEERM 140 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSSSTSSSSE-EG----------CGHHHHHHHHHHTHCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCCccccccC-CH----------HHHHHHHHHHhcCCeEEEEee
Confidence 56789999999999999998764 3578888888986554332 21 367778888887655554444
Q ss_pred EEE
Q 005250 466 KVN 468 (706)
Q Consensus 466 ~v~ 468 (706)
.++
T Consensus 141 ~l~ 143 (285)
T PF01513_consen 141 RLE 143 (285)
T ss_dssp EEE
T ss_pred eEE
Confidence 444
No 47
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.16 E-value=0.037 Score=59.40 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccC-ChhHHH-------HH--HHhC--CCCeEEEEcCchhHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQ-GPEVGL-------EL--FSNF--QYFRVLVCGGDGTVA 400 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~-~p~~al-------~l--~~~~--~~~~Ilv~GGDGTV~ 400 (706)
++.++||+|+.. ....++..++...|...++ +.+.... .++... .. ..+. ..+.|++.|||||+=
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 82 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFL 82 (296)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHH
Confidence 678999999844 4456777787777755442 2222100 000000 00 0111 347899999999999
Q ss_pred HHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhh
Q 005250 401 WVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAA 458 (706)
Q Consensus 401 ~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~ 458 (706)
.++..+... .+||-=+-+|+ ||.=..++ .+++.+.++++.++.
T Consensus 83 ~aa~~~~~~----~~PilGIN~G~-------lGFL~~~~----~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 83 SVAREIAPR----AVPIIGINQGH-------LGFLTQIP----REYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHhccc----CCCEEEEecCC-------CeEeeccC----HHHHHHHHHHHHcCC
Confidence 888877542 34544466665 54321111 134555666665554
No 48
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.16 E-value=0.0013 Score=70.27 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 387 YFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
-+.|+++|||||...|++++. .+.||-=||.||-|-..
T Consensus 101 VdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~Sg 138 (355)
T COG3199 101 VDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSG 138 (355)
T ss_pred ceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceecc
Confidence 467999999999999999984 36788889999999864
No 49
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.15 E-value=0.044 Score=59.05 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=56.8
Q ss_pred eEEEEECCeEEEecCceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceE
Q 005250 542 QVWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARR 619 (706)
Q Consensus 542 ~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~r 619 (706)
.+++.+||+.+.- -..-+++|+. .+|.+ ..+...+. +-+-.++++.++.. .|.- ..+++-
T Consensus 166 ~~~v~id~~~~~~-~~~DGlIVsTPTGSTA--YslSAGGP----------Iv~P~~~~~~itPI~Phsl-----~~RplV 227 (305)
T PRK02649 166 HFEIAIGRHAPVD-IAADGVILSTPTGSTA--YSLSAGGP----------VITPDVPVLQLTPICPHSL-----ASRALV 227 (305)
T ss_pred EEEEEECCEEEEE-EecCeEEEeCCCcHHH--HHhhCCCc----------ccCCCCCeEEEEecCcCCC-----CCCCEE
Confidence 5678889987652 2456788765 22221 22222221 11223566666543 2211 234455
Q ss_pred EEEecEEEEEeC--CCccEEecCCCCC----CceEEEEEEcCceEEEEeC
Q 005250 620 LAQGKVIRIHSS--SPFPVQIDGEPFI----QQAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 620 l~q~~~i~I~~~--~~~pvqvDGE~~~----~~P~~I~I~~~~~~~ml~~ 663 (706)
+....+|+|+.. ....+.+||.... ...++|+..+....++-.+
T Consensus 228 lp~~~~I~i~~~~~~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~~ 277 (305)
T PRK02649 228 FSDSEPVTVFPATPERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQ 277 (305)
T ss_pred ECCCCEEEEEecCCCcEEEEEecceeEecCCCCEEEEEECCCEEEEEEcC
Confidence 555566777653 3466899998843 2457777777776665443
No 50
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.83 E-value=0.11 Score=54.87 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=55.8
Q ss_pred EEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCC
Q 005250 337 LLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPP 416 (706)
Q Consensus 337 llV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~pp 416 (706)
+.+|.|+ ..++.++..++...|...++ ++. . ...+.|++.|||||+=.++..+.... ..+|
T Consensus 3 i~Ii~~~---~~~~~~~~~~l~~~l~~~g~-~~~--~-----------~~~Dlvi~iGGDGT~L~a~~~~~~~~--~~iP 63 (265)
T PRK04885 3 VAIISNG---DPKSKRVASKLKKYLKDFGF-ILD--E-----------KNPDIVISVGGDGTLLSAFHRYENQL--DKVR 63 (265)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHcCC-ccC--C-----------cCCCEEEEECCcHHHHHHHHHhcccC--CCCe
Confidence 6777773 34566788888887765553 211 0 13478999999999988887765421 2345
Q ss_pred EEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhh
Q 005250 417 VAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAV 459 (706)
Q Consensus 417 vgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~ 459 (706)
|-=+.+|+-.=|+ .. + .+++.++++++.++.-
T Consensus 64 ilGIN~G~lGFL~-~~---------~-~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 64 FVGVHTGHLGFYT-DW---------R-PFEVDKLVIALAKDPG 95 (265)
T ss_pred EEEEeCCCceecc-cC---------C-HHHHHHHHHHHHcCCc
Confidence 4445555533232 11 1 1356677777776643
No 51
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.61 E-value=0.00047 Score=76.86 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=45.3
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCCC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDL 203 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 203 (706)
.+|.-.. |+|..++||++|++.+.+..+ ||++|.-|+.++|.+|..+.+++ |.-
T Consensus 144 ~PH~l~v------hSY~~PtFCD~CGEmL~GLvr---QGlKC~gCglNyHKRCa~kipNN----CsG 197 (888)
T KOG4236|consen 144 RPHTLFV------HSYKAPTFCDFCGEMLFGLVR---QGLKCEGCGLNYHKRCAFKIPNN----CSG 197 (888)
T ss_pred ecceeee------ecccCchHHHHHHHHHHHHHH---ccccccCCCCcHhhhhhhcCCCC----CCc
Confidence 4665544 689999999999998877665 46999999999999999999887 964
No 52
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.49 E-value=0.17 Score=59.36 Aligned_cols=248 Identities=16% Similarity=0.159 Sum_probs=122.0
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHH---H---HHHhC-CCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGL---E---LFSNF-QYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al---~---l~~~~-~~~~Ilv~GGDGTV~~VLn~L 406 (706)
+.+.||+|+. .....++.+++...|...++ +.+.......... + ...+. ..+.|++.|||||+=.++..+
T Consensus 291 ~~i~iv~~~~--~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~ 368 (569)
T PRK14076 291 TKFGIVSRID--NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVLRASKLV 368 (569)
T ss_pred cEEEEEcCCC--CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHHHHHHHh
Confidence 5688888874 44566777787776654443 2222100000000 0 00111 246899999999999888876
Q ss_pred HhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceE
Q 005250 407 EKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFM 486 (706)
Q Consensus 407 ~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f 486 (706)
.. ..+||-=+.+|+-.=|+. + + .+++.+.|.++.++.-....|-.+++.-.. .+. .....+.
T Consensus 369 ~~----~~~PilGin~G~lGFL~~-------~---~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~--~~~-~~~~~~a 430 (569)
T PRK14076 369 NG----EEIPIICINMGTVGFLTE-------F---S-KEEIFKAIDSIISGEYEIEKRTKLSGFILK--DGH-QNILPSA 430 (569)
T ss_pred cC----CCCCEEEEcCCCCCcCcc-------c---C-HHHHHHHHHHHHcCCceEEEeEEEEEEEEE--CCc-ceeeeEE
Confidence 54 245655577777332221 1 1 135666777777665433333222221100 000 0011233
Q ss_pred EEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-
Q 005250 487 LNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN- 565 (706)
Q Consensus 487 ~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N- 565 (706)
+|=+.+- |.. + ..-..+++.+||+.+.- -..-+++|..
T Consensus 431 lNdv~i~------------~~~-~---------------------------~~~~~~~v~i~~~~~~~-~~~DGlivsTp 469 (569)
T PRK14076 431 LNEVVIT------------TKN-P---------------------------AKMLHFEVYVNGELVEE-VRADGIIISTP 469 (569)
T ss_pred EEEEEEc------------cCC-C---------------------------CceEEEEEEECCEEEEE-EECCEEEEeCC
Confidence 3332221 100 0 01235788889988752 2456777765
Q ss_pred cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC-CCccEEecCCCC
Q 005250 566 IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS-SPFPVQIDGEPF 643 (706)
Q Consensus 566 i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~-~~~pvqvDGE~~ 643 (706)
+.|.+ ..+...+. +-+..++++.++.. .|. ...+++-+...++|+|+.. .+..+.+||...
T Consensus 470 tGSTa--YslSAGGP----------iv~p~~~~~~~tPI~ph~-----l~~rplV~~~~~~i~i~~~~~~~~l~~DG~~~ 532 (569)
T PRK14076 470 TGSTA--YSLSAGGP----------IVEPTVDGFIIVPICPFK-----LSSRPLVVSANSEIKIKLLKKSALVVIDGSIE 532 (569)
T ss_pred CchHH--HHhhCCCc----------eeCCCCCeEEEEeeccCC-----CCCCCEEECCCCEEEEEEeCCcEEEEECCcee
Confidence 22211 22222221 11112344444432 221 1135555666677777763 456789999864
Q ss_pred C-C---ceEEEEEEcCceEEE
Q 005250 644 I-Q---QAGCLDITHHGQVFT 660 (706)
Q Consensus 644 ~-~---~P~~I~I~~~~~~~m 660 (706)
. . ..++|+..+....++
T Consensus 533 ~~l~~gd~I~I~~s~~~~~~v 553 (569)
T PRK14076 533 FEAKKGDEIIFRKSDSYAYFV 553 (569)
T ss_pred eecCCCCEEEEEECCceEEEE
Confidence 2 2 346666666555544
No 53
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.35 E-value=0.42 Score=54.44 Aligned_cols=105 Identities=16% Similarity=0.025 Sum_probs=57.1
Q ss_pred ceEEEEECCeEEEecCceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCce
Q 005250 541 WQVWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQAR 618 (706)
Q Consensus 541 ~~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~ 618 (706)
..+++.+||+.+.- -..-+|+|.. .+|.+ ..+...+. +-+..++++.++.. .|.- ..+++
T Consensus 364 i~l~V~Idg~~v~~-~rgDGLIVSTPTGSTA--YsLSAGGP----------IV~P~l~~ivlTPIcPHsL-----s~RPI 425 (508)
T PLN02935 364 TNLECYCDNSFVTC-VQGDGLILSTTSGSTA--YSLAAGGS----------MVHPQVPGILFTPICPHSL-----SFRPL 425 (508)
T ss_pred EEEEEEECCEeEEE-EECCcEEEecCccHHH--HHHhcCCc----------ccCCCCCeEEEEecCCCcC-----CCCCe
Confidence 35677889988762 2456777765 22211 12222221 11223455555543 2211 13455
Q ss_pred EEEEecEEEEEeC----CCccEEecCCCCCC----ceEEEEEEcCceEEEEeC
Q 005250 619 RLAQGKVIRIHSS----SPFPVQIDGEPFIQ----QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 619 rl~q~~~i~I~~~----~~~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~~ 663 (706)
-+.....|+|+.. ....+.+||..... ..++|+..+....++..+
T Consensus 426 Vlp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~ 478 (508)
T PLN02935 426 ILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQV 478 (508)
T ss_pred EECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeC
Confidence 5666677777653 23668999987532 457777777666655443
No 54
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.31 E-value=0.51 Score=49.70 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=57.8
Q ss_pred eEEEEECCeEEEecCceeEEEEec-cCcc-----ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcc
Q 005250 542 QVWLEVDGKGIEIPKDSEGLIVLN-IGSY-----MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGL 614 (706)
Q Consensus 542 ~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~-----gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~ 614 (706)
.+++.+||+.+.- -..-+++|.. ++|. +||--+.| .++++.++.. .|....+...
T Consensus 122 ~~~v~idg~~~~~-~~gDGlIVsTPtGSTAYslSAGGPIv~P-----------------~~~~~~itPI~Ph~~~~~~~~ 183 (259)
T PRK00561 122 PINIFIDNEFWEK-YRGSGLLIGPRTGSTALAKSAKGAVIFP-----------------RIDVIQIIELNPLLHPNQTTI 183 (259)
T ss_pred EEEEEECCEEEEE-EecCEEEEeCchHHHHHHHhCCCCccCC-----------------CCCeEEEEeeCCCCccccccc
Confidence 6788899988652 2456787765 2221 23322222 2455555543 2221111122
Q ss_pred cCceEEEEecEEEEEeCC------CccEEecCCCCCC----ceEEEEEEcCceEEEEe
Q 005250 615 SQARRLAQGKVIRIHSSS------PFPVQIDGEPFIQ----QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 615 ~~~~rl~q~~~i~I~~~~------~~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~ 662 (706)
.+++-+.....|+|+... ...+.+||+.... ..+.|+.......+++.
T Consensus 184 ~rplVl~~~~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~ 241 (259)
T PRK00561 184 QSPIILPIDTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVAS 241 (259)
T ss_pred CCCeEECCCCEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEE
Confidence 356666677788887642 3458999999754 23667777666654443
No 55
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.30 E-value=0.51 Score=50.08 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=116.1
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHH----HHhCCCCeEEEEcCchhHHHHHHHHHhcC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLEL----FSNFQYFRVLVCGGDGTVAWVLNAIEKRN 410 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l----~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~ 410 (706)
++.||+|+.. ....++..++...|. .++ +.+.. .....+.. ..+...+.|++.|||||+=.++..+ .
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~---~ 73 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-PDWEIIYEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA---K 73 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-cCCEEEEec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc---C
Confidence 4788889743 455667777777663 332 22221 11111110 0112457899999999986555432 1
Q ss_pred CCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEe
Q 005250 411 FESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYL 490 (706)
Q Consensus 411 ~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~ 490 (706)
.|.+| +-+|+-.=|+ .++ .+++.+.|+++.++.-..-.|..+++.-. | . ...+.+|=+
T Consensus 74 ---~PilG-IN~G~lGFL~-------~~~----~~~~~~~l~~i~~g~~~i~~r~~L~~~v~----g--~-~~~~aLNdv 131 (271)
T PRK01185 74 ---GPILG-INMGGLGFLT-------EIE----IDEVGSAIKKLIRGEYFIDERMKLKVYIN----G--E-RLEDCTNEA 131 (271)
T ss_pred ---CCEEE-EECCCCccCc-------ccC----HHHHHHHHHHHHcCCcEEEEeeEEEEEEC----C--c-EeEEEEEEE
Confidence 24444 4666532222 111 13566777777776544333433333211 0 0 011233322
Q ss_pred eccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec-cCcc
Q 005250 491 GIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN-IGSY 569 (706)
Q Consensus 491 siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~ 569 (706)
.+- |.. + ..--.+++.+||+.+.- -..-+++|+. ++|.
T Consensus 132 vv~------------~~~-~---------------------------~~~i~~~v~i~~~~~~~-~~~DGlIVsTPTGST 170 (271)
T PRK01185 132 VIH------------TDR-I---------------------------AKIRQFKIYYDGHFLDT-FKADGVIVATPTGST 170 (271)
T ss_pred EEe------------cCC-C---------------------------CcEEEEEEEECCEEEEE-EEeeEEEEeCCCchH
Confidence 221 100 0 01125678889987752 2466788865 2222
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC--CCccEEecCCCCC-C
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS--SPFPVQIDGEPFI-Q 645 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~--~~~pvqvDGE~~~-~ 645 (706)
+ ..+...+. +-+..++++.++.. .|. ...+++-+....+|+|+.. ....+.+||+... .
T Consensus 171 A--YslSAGGP----------Iv~P~~~~~~ltPI~Ph~-----l~~rplVl~~~~~I~i~~~~~~~~~l~~DG~~~~~l 233 (271)
T PRK01185 171 S--YSSSAGGP----------ILLPNLEGMVISYIAPYS-----SRPKSVVVPSESTVEIKIAGDQSSLLILDGQYEYKI 233 (271)
T ss_pred H--HHhhCCCc----------eeCCCCCeEEEEecccCC-----CCCCCEEECCCCEEEEEEcCCCCEEEEECCCceEec
Confidence 1 12222221 11223345555442 221 1134555555667777654 3566899999642 2
Q ss_pred ---ceEEEEEEcCceEEEEe
Q 005250 646 ---QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 646 ---~P~~I~I~~~~~~~ml~ 662 (706)
..++|+..++...++-.
T Consensus 234 ~~~d~i~i~~s~~~~~~v~~ 253 (271)
T PRK01185 234 SKGDTVEISKSENYARFISF 253 (271)
T ss_pred CCCCEEEEEECCCeeEEEEc
Confidence 45677776666555544
No 56
>PLN02727 NAD kinase
Probab=95.73 E-value=1.4 Score=53.60 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=58.1
Q ss_pred eEEEEECCeEEEecCceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceE
Q 005250 542 QVWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARR 619 (706)
Q Consensus 542 ~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~r 619 (706)
.+++.+||+.+.- -..-+|+|.. +++.+ ..+...+. +-+..++++.++.. .|. + ..+++-
T Consensus 848 ~ieVyIDg~~l~t-yrgDGLIVSTPTGSTA--YSLSAGGP----------IVhP~v~aIvITPIcPHS--L---s~RPIV 909 (986)
T PLN02727 848 KIECYEHDRLITK-VQGDGVIVATPTGSTA--YSTAAGGS----------MVHPNVPCMLFTPICPHS--L---SFRPVI 909 (986)
T ss_pred EEEEEECCEEeEE-eecceEEEECCCchHH--hHhhcCCc----------eeCCCCCeEEEEecCccc--C---CCCCEE
Confidence 5778889988762 2466788865 22221 12222221 11123455555543 221 1 135666
Q ss_pred EEEecEEEEEeCC----CccEEecCCCCCC----ceEEEEEEcCceEEEEe
Q 005250 620 LAQGKVIRIHSSS----PFPVQIDGEPFIQ----QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 620 l~q~~~i~I~~~~----~~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~ 662 (706)
+....+|+|++.. ...+.+||..... ..++|+..+....++-+
T Consensus 910 Lp~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~ 960 (986)
T PLN02727 910 LPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNK 960 (986)
T ss_pred ECCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEe
Confidence 6667778887642 4668999998642 45777777777666543
No 57
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.0027 Score=71.68 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 67 LSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 67 ~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
...|+|....|. -||||.-|...+||.. .||++|..|++.+|.+|......+|-
T Consensus 170 ttphnf~~~t~~--tpt~cyecegllwgla-----rqglrctqc~vk~hdkc~ell~adcl 223 (1283)
T KOG1011|consen 170 TTPHNFATTTFQ--TPTFCYECEGLLWGLA-----RQGLRCTQCQVKVHDKCRELLSADCL 223 (1283)
T ss_pred CCCCceeeeecc--CCchhhhhhhHHHHHh-----hcccchhhccccHHHHHHHHhhhHHH
Confidence 457999887765 8999999999997643 56699999999999999988777764
No 58
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=95.20 E-value=0.0053 Score=68.88 Aligned_cols=74 Identities=20% Similarity=0.358 Sum_probs=58.5
Q ss_pred hcHHHHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 44 TSLNWIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 44 ~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
.-..||-++.-++-|+.. +......|.+...+|. .+|.|-+|..+|-|.+ .|||+|..|+.-+|+.|...++
T Consensus 499 ~kkkWmeqfema~SNi~P-dya~an~H~fqmhtF~--~~tsCkvC~mllrGtf-----YQGY~C~~c~~~ahkecl~~vp 570 (865)
T KOG2996|consen 499 LKKKWMEQFEMAKSNISP-DYARANNHDFQMHTFK--NTTSCKVCQMLLRGTF-----YQGYKCEKCGADAHKECLGRVP 570 (865)
T ss_pred HHHHHHHHHHHHHhcCCc-ccccccCcceEEEecc--CCcchHHHHHHhhhhh-----hcceeeeeccccHHHHhccCCC
Confidence 344699998666655543 5566778999988765 9999999998887655 4669999999999999999875
Q ss_pred ccC
Q 005250 124 KDC 126 (706)
Q Consensus 124 ~~C 126 (706)
+|
T Consensus 571 -~c 572 (865)
T KOG2996|consen 571 -PC 572 (865)
T ss_pred -Cc
Confidence 45
No 59
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.55 E-value=2.5 Score=44.90 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=55.7
Q ss_pred eEEEEECCeEEEecCceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceE
Q 005250 542 QVWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARR 619 (706)
Q Consensus 542 ~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~r 619 (706)
.+++.+||+.+.- ...-+++|.. .+|.+ ..+...+. +-+..++++.++.. .|. ...+++-
T Consensus 141 ~~~v~i~~~~~~~-~~~DGlIVsTPtGSTA--Y~lSAGGP----------Iv~P~~~~~~itPI~Phs-----l~~RpiV 202 (272)
T PRK02231 141 DFHVYIDDKFAFS-QRSDGLIISTPTGSTA--YSLSAGGP----------ILTPNLNAIALVPMFPHT-----LSSRPLV 202 (272)
T ss_pred EEEEEECCEEEEE-EecCeEEEECCCcHHH--HHhhCCCc----------eeCCCCCeEEEEeccccc-----cCCCCEE
Confidence 5778889987662 2466788865 22211 12222211 11222345555442 221 1235666
Q ss_pred EEEecEEEEEeCC----CccEEecCCCCC-C---ceEEEEEEcCceEEEEe
Q 005250 620 LAQGKVIRIHSSS----PFPVQIDGEPFI-Q---QAGCLDITHHGQVFTLR 662 (706)
Q Consensus 620 l~q~~~i~I~~~~----~~pvqvDGE~~~-~---~P~~I~I~~~~~~~ml~ 662 (706)
+....+|+|+... ...+.+||.... . ..++|+..++...++-.
T Consensus 203 l~~~~~I~i~~~~~~~~~~~l~~DG~~~~~l~~~d~v~I~~s~~~~~lv~~ 253 (272)
T PRK02231 203 IDGDSKISLRFAEYNTPQLEVSCDSQIALPFTPDDRVHVQKSPDKLRLLHL 253 (272)
T ss_pred ECCCCEEEEEEcCCCCccEEEEECCCeEEEeCCCcEEEEEEcCCEEEEEEc
Confidence 6667788887632 366899999753 2 34667776666665543
No 60
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.25 E-value=0.017 Score=66.77 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=47.2
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCCCCCCC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDLGPHR 207 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~~ 207 (706)
.-|++.- ..+.++++|++|.|-+.+. |.+||+|.-|...+|.+|+..+... |++..-.
T Consensus 157 ~gH~F~a------T~l~Qpt~Cs~C~kFi~gL---~kqGyQCqvC~~vvHKkCh~kvv~~----C~~~~~~ 214 (694)
T KOG0694|consen 157 DGHKFGA------TSLRQPTFCSWCQKFIWGL---RKQGYQCQVCWRVVHKKCHVKVVTL----CDFLDNL 214 (694)
T ss_pred eCcEEEE------eeccCcchhhhhhhheecc---CCCceEEeeeeehHhhhhHHHHHHh----ccCcCcc
Confidence 3466655 4678899999998877653 4689999999999999999988876 9998753
No 61
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.85 E-value=5.8 Score=41.52 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCC
Q 005250 387 YFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGT 424 (706)
.+.|++.|||||+=.++..+.+ ..+||-=+.+|+
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~ 59 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS 59 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC
Confidence 3689999999999888877654 245544466665
No 62
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=93.67 E-value=0.035 Score=63.55 Aligned_cols=78 Identities=28% Similarity=0.452 Sum_probs=54.8
Q ss_pred hhhhhcHHHHHHHHHhh---hhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCC
Q 005250 40 WQRRTSLNWIKDAARAK---KKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHF 116 (706)
Q Consensus 40 ~~r~~~~~~~~~~~r~k---~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~ 116 (706)
.-|++...|.-.++.-+ .-+..-.++|...|.++.+.|. ...||.+|..-++ -.+++|+.|+|.+|.
T Consensus 146 ~~~r~~~~~~~~~~~l~geE~~ve~l~~vpl~~H~~~rktf~--~~~fC~~~~~~~l--------~~gfrC~~C~~KfHq 215 (678)
T KOG0193|consen 146 KGRRTRLPWDTIASPLDGEELHVEPLENVPLTTHNFVRKTFF--PLAFCDSCCNKFL--------FTGFRCQTCGYKFHQ 215 (678)
T ss_pred hccccccCcccCCCCCCccceeeeeccCCCccceeeeecccc--chhhhhhhcchhh--------hcccccCCCCCcccc
Confidence 33455566777764443 2223445668889988777654 6789995554332 123899999999999
Q ss_pred CchhhhcccCc
Q 005250 117 FCSEFTAKDCK 127 (706)
Q Consensus 117 ~C~~~~~~~Ck 127 (706)
+|..++...|.
T Consensus 216 ~Cs~~vp~~C~ 226 (678)
T KOG0193|consen 216 SCSPRVPTSCV 226 (678)
T ss_pred ccCCCCCCCCC
Confidence 99999999996
No 63
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=93.49 E-value=0.013 Score=61.61 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=51.1
Q ss_pred ccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 61 KKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 61 ~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
.+.-++..+|.++..... -|+.|.-|++++|+.- .+|++|..||++.|-+|-..+..+|..
T Consensus 43 ~~~lv~~r~~~~~~~g~~--~~~~~~~c~~~~~~vl-----~egL~c~~c~~tch~rcr~lv~ldc~~ 103 (348)
T KOG4239|consen 43 LELLVPLRGHNFYTAGLL--LPTWCDKCGDFIWGVL-----REGLLCIHCKFTCHIRCRMLVDLDCRS 103 (348)
T ss_pred ccceeecccccccccccc--ccccchhhhHHHHHHH-----HHHHhhhhcCCccCHHHHhhhhhhhcC
Confidence 455567789999887654 8999999999998742 455899999999999999999999854
No 64
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=92.58 E-value=0.054 Score=63.27 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=59.2
Q ss_pred hhhhhcHHHHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCch
Q 005250 40 WQRRTSLNWIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCS 119 (706)
Q Consensus 40 ~~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~ 119 (706)
.+|++|+.||.++..-.......-....-.|+|..-... .+.-|.||.+......+ -|-++|--|+.+||..|.
T Consensus 78 dn~ke~e~wi~~~kt~q~~e~~s~~~a~mphqw~Egnlp--vsskc~vc~k~cgs~~r----lqd~rclwc~~~vh~~c~ 151 (1099)
T KOG1170|consen 78 DNRKEMEKWINQSKTPQHLEFISPENAIMPHQWMEGNLP--VSSKCSVCEKPCGSVLR----LQDYRCLWCGCCVHDTCI 151 (1099)
T ss_pred cchhHHHHhhccccchhhccccCCCcccCchhhhhcCCC--ccccccccccccccccc----cCCcceEeeccEeehhhh
Confidence 789999999999722211111111112457999997654 88999999987755444 466899999999999999
Q ss_pred hhhcccCc
Q 005250 120 EFTAKDCK 127 (706)
Q Consensus 120 ~~~~~~Ck 127 (706)
....+.|.
T Consensus 152 ~~~~~~cs 159 (1099)
T KOG1170|consen 152 GNLARACS 159 (1099)
T ss_pred hhHHhhcc
Confidence 98887775
No 65
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=91.96 E-value=0.044 Score=37.99 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=12.9
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCch
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCS 119 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~ 119 (706)
.|+.|.+.+.+ ...|.|..|.+.+|..|+
T Consensus 2 ~C~~C~~~~~~-------~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-------GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-------CceEECccCCCccChhcC
Confidence 49999988854 134999999999999985
No 66
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=91.58 E-value=0.11 Score=36.07 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=24.2
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCch
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCS 119 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~ 119 (706)
.|.+|++.+.+.. +|.|+.|.+.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~-------~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-------FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-------eEEeCCCCCeEcCccC
Confidence 4999999886532 4999999999999995
No 67
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=0.047 Score=62.09 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=40.7
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..||.|.. | ....++||.-|.-.+++.-+ ||+||.-|+..||++|.+.++.+
T Consensus 170 ttphnf~~-~-----t~~tpt~cyecegllwglar---qglrctqc~vk~hdkc~ell~ad 221 (1283)
T KOG1011|consen 170 TTPHNFAT-T-----TFQTPTFCYECEGLLWGLAR---QGLRCTQCQVKVHDKCRELLSAD 221 (1283)
T ss_pred CCCCceee-e-----eccCCchhhhhhhHHHHHhh---cccchhhccccHHHHHHHHhhhH
Confidence 47899876 3 56779999999655554333 67999999999999999887654
No 68
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.20 E-value=0.079 Score=56.66 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=39.5
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
--|.|... -+.....|..|.--+++..+ ||+||.-|+..||.+|+..+..+
T Consensus 129 ngh~fqak------r~nrr~~c~ic~d~iwglgr---qgyrcinckl~vhkkch~~v~~~ 179 (593)
T KOG0695|consen 129 NGHLFQAK------RFNRRAYCGICSDRIWGLGR---QGYRCINCKLLVHKKCHGLVPLT 179 (593)
T ss_pred cCcchhhh------hhccceeeeechhhhhhccc---ccceeecceeehhhhhcccccch
Confidence 45666654 24457899999888876433 67999999999999999988755
No 69
>PLN02929 NADH kinase
Probab=91.09 E-value=15 Score=39.56 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCc---------chh--hhhcccCCCcccCCCCCcHHHHHHHH
Q 005250 386 QYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTG---------NDM--SRVLQWGRGFSMVDGHGGLSTILNDI 454 (706)
Q Consensus 386 ~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTG---------NDl--AR~Lgwg~g~~~~~~~~~~~~iL~~i 454 (706)
..+.|++.|||||+=.++..+ +. ..|.+| +-.|+. |.| .|.+|.=..+ + .+++.++|.++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-~~---~iPvlG-IN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~---~-~~~~~~~L~~i 134 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-DD---SIPVLG-VNSDPTQKDEVEEYSDEFDARRSTGHLCAA---T-AEDFEQVLDDV 134 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-CC---CCcEEE-EECCCcccccccccccccccccCccccccC---C-HHHHHHHHHHH
Confidence 357899999999998888776 32 234445 555631 222 3456542111 1 23566677777
Q ss_pred HHhhhe
Q 005250 455 EHAAVT 460 (706)
Q Consensus 455 ~~a~~~ 460 (706)
.++.-.
T Consensus 135 l~g~~~ 140 (301)
T PLN02929 135 LFGRLK 140 (301)
T ss_pred HcCCce
Confidence 666433
No 70
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=87.64 E-value=0.28 Score=33.93 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=12.8
Q ss_pred cccccCCCcCcCccCCCCceeecccccccchhhh
Q 005250 157 FCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCH 190 (706)
Q Consensus 157 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~ 190 (706)
.|..|+++..+. ..++|.-|...+|.+|.
T Consensus 2 ~C~~C~~~~~~~-----~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-----WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-----ceEECccCCCccChhcC
Confidence 589998887651 24899999999999984
No 71
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=86.22 E-value=0.46 Score=53.00 Aligned_cols=38 Identities=26% Similarity=0.612 Sum_probs=27.2
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhhhcc
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAK 124 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~ 124 (706)
...||||..--.. ..+..++|+.||+.||+.|.....+
T Consensus 119 ~~iCcVClg~rs~-----da~ei~qCd~CGi~VHEgCYGv~dn 156 (707)
T KOG0957|consen 119 AVICCVCLGQRSV-----DAGEILQCDKCGINVHEGCYGVLDN 156 (707)
T ss_pred ceEEEEeecCccc-----cccceeeccccCceecccccccccc
Confidence 3489999853211 1145589999999999999887643
No 72
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=85.75 E-value=0.5 Score=32.78 Aligned_cols=29 Identities=28% Similarity=0.710 Sum_probs=24.1
Q ss_pred cccccCCCcCcCccCCCCceeecccccccchhhh
Q 005250 157 FCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCH 190 (706)
Q Consensus 157 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~ 190 (706)
.|++|++...+.. .++|.-|...+|.+|.
T Consensus 2 ~C~~C~~~~~~~~-----~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-----FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-----eEEeCCCCCeEcCccC
Confidence 5999999877542 3999999999999984
No 73
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=82.10 E-value=75 Score=33.88 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=54.5
Q ss_pred EEEEECCeEEEecCceeEEEEec-cCccccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEE
Q 005250 543 VWLEVDGKGIEIPKDSEGLIVLN-IGSYMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLA 621 (706)
Q Consensus 543 v~l~~Dg~~i~l~~~~~~i~v~N-i~~~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~ 621 (706)
+++.+||+.++- -..-+++|+. ++|-+ .++...+. +=+-.++++.+.....+.. . .+++-+-
T Consensus 152 ~~v~id~~~~~~-~r~DGliVsTPTGSTA--Y~lSAGGP----------Iv~P~l~ai~ltpi~p~~l---~-~Rpiv~p 214 (281)
T COG0061 152 FEVYIDDEFFES-FRGDGLIVSTPTGSTA--YNLSAGGP----------ILHPGLDAIQLTPICPHSL---S-FRPLVLP 214 (281)
T ss_pred EEEEECCEEEEE-EecCEEEEEcCCcHHH--HhhhcCCC----------ccCCCCCeEEEeecCCCcc---c-CCCEEEC
Confidence 677889888762 2466788765 22221 22222221 2223456666654321110 1 2334444
Q ss_pred EecEEEEEeC----CCccEEecCCCCCC----ceEEEEEEcCceEEEEeCCC
Q 005250 622 QGKVIRIHSS----SPFPVQIDGEPFIQ----QAGCLDITHHGQVFTLRRAP 665 (706)
Q Consensus 622 q~~~i~I~~~----~~~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~~~~ 665 (706)
....++|+.. .+.-+-+||..... ..++|+..+....+.-+...
T Consensus 215 ~~~~v~i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~~ 266 (281)
T COG0061 215 SSSTVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRSY 266 (281)
T ss_pred CCceEEEEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCCc
Confidence 4455666543 22356799999764 34666666666665544433
No 74
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=80.42 E-value=6 Score=44.28 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCC------CCCEEEeeCCCcchhhhhcc
Q 005250 387 YFRVLVCGGDGTVAWVLNAIEKRNFES------PPPVAVLPLGTGNDMSRVLQ 433 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~~VLn~L~~~~~~~------~ppvgILPlGTGNDlAR~Lg 433 (706)
...|+|+|||--++.||....++--.+ -..+-|||+|+ |.+||.||
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLg 127 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLG 127 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHh
Confidence 357999999999999999887653222 23478999999 99999998
No 75
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=78.86 E-value=0.62 Score=54.38 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFT 122 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~ 122 (706)
--..|.||+..=... | .+-..|+.|+++||..|....
T Consensus 270 edviCDvCrspD~e~---~--neMVfCd~Cn~cVHqaCyGIl 306 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEE---A--NEMVFCDKCNICVHQACYGIL 306 (893)
T ss_pred ccceeceecCCCccc---c--ceeEEeccchhHHHHhhhcee
Confidence 346899998653211 1 344799999999999998765
No 76
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=74.01 E-value=15 Score=39.97 Aligned_cols=91 Identities=20% Similarity=0.348 Sum_probs=49.8
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCC---CcEEE-EeccCCh---hHHHHHHHhCCCCeEEEEcCchhHHHHHHHH-
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNP---AQVFE-LSASQGP---EVGLELFSNFQYFRVLVCGGDGTVAWVLNAI- 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp---~qV~d-l~~t~~p---~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L- 406 (706)
++.+||..+..... .+.+.+...|+. ..+|+ +...... +++.+++++...+.||++|| |++-.+.-++
T Consensus 23 ~~~lvv~~~~~~~~---g~~~~v~~~l~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa~a 98 (332)
T cd08180 23 KRVLIVTDPFMVKS---GMLDKVTDHLDSSIEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKAII 98 (332)
T ss_pred CeEEEEeCchhhhC---ccHHHHHHHHHhcCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHHHH
Confidence 57778877543322 133444444433 22343 2211112 25667777777889999998 5666665543
Q ss_pred --Hhc-CCCCCCCEEEeeC--CCcchhh
Q 005250 407 --EKR-NFESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 407 --~~~-~~~~~ppvgILPl--GTGNDlA 429 (706)
... ...+.+|+..+|. |||--..
T Consensus 99 ~~~~~~~~~~~~p~i~VPTtagtgse~t 126 (332)
T cd08180 99 YFAKKLGKKKKPLFIAIPTTSGTGSEVT 126 (332)
T ss_pred HHHhCCCCCCCCCEEEeCCCCcchHhhC
Confidence 221 1234578999996 6665443
No 77
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=73.56 E-value=1.1 Score=51.15 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=40.6
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhccc
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSK 195 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 195 (706)
-.|.+.- +++...+.|.+|.+...+.|.+ ||+|.-|....|..|...+++
T Consensus 522 n~H~fqm------htF~~~tsCkvC~mllrGtfYQ---GY~C~~c~~~ahkecl~~vp~ 571 (865)
T KOG2996|consen 522 NNHDFQM------HTFKNTTSCKVCQMLLRGTFYQ---GYKCEKCGADAHKECLGRVPP 571 (865)
T ss_pred cCcceEE------EeccCCcchHHHHHHhhhhhhc---ceeeeeccccHHHHhccCCCC
Confidence 4455544 5778899999999988877765 599999999999999887754
No 78
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=73.33 E-value=1 Score=50.20 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=44.1
Q ss_pred CCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccc
Q 005250 69 HHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCV 129 (706)
Q Consensus 69 ~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 129 (706)
.|.|..+.+. +|-+|..|.+.|- +| +-+++|..|-+++|..|-.+..-+|.+.
T Consensus 286 ~htfi~kt~~--~~~~Cv~C~krIk----fg--~~sLkCRdC~v~~H~~Cr~~l~lpCIP~ 338 (604)
T KOG3564|consen 286 LHTFISKTVI--KPENCVPCGKRIK----FG--KLSLKCRDCPVVCHIECRDKLTLPCIPT 338 (604)
T ss_pred cchhhHhhcc--Ccccchhhhhhhh----hh--hcccccccCCeeechhHHhcCCCCCcCc
Confidence 5778777766 8999999999884 22 3348999999999999999999999774
No 79
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.87 E-value=3.7 Score=32.65 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcc
Q 005250 154 LSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMS 194 (706)
Q Consensus 154 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 194 (706)
...+|..|++.+.. +-....|.-|+..+|.+|-...-
T Consensus 4 ~~~~C~~Cg~~~~~----~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD----GDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cCccChhhCCcccC----CCCEEECCCCCCcccHHHHhhCC
Confidence 36799999887731 11468999999999999997654
No 80
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=68.65 E-value=2.3 Score=49.21 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=29.6
Q ss_pred CCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCC
Q 005250 152 AELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCD 202 (706)
Q Consensus 152 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cd 202 (706)
+....||+.| ...|+. ++++|.-|+.-+|..|...++.- |.
T Consensus 186 f~~~~fC~~~----~~~~l~--~gfrC~~C~~KfHq~Cs~~vp~~----C~ 226 (678)
T KOG0193|consen 186 FFPLAFCDSC----CNKFLF--TGFRCQTCGYKFHQSCSPRVPTS----CV 226 (678)
T ss_pred ccchhhhhhh----cchhhh--cccccCCCCCccccccCCCCCCC----CC
Confidence 3444566644 333433 57999999999999999998765 76
No 81
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=67.13 E-value=1.9 Score=48.19 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhccc
Q 005250 151 NAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSK 195 (706)
Q Consensus 151 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 195 (706)
.+..+.+|..|+|.+. +|.-+++|..|...+|-.|...+.-
T Consensus 293 t~~~~~~Cv~C~krIk----fg~~sLkCRdC~v~~H~~Cr~~l~l 333 (604)
T KOG3564|consen 293 TVIKPENCVPCGKRIK----FGKLSLKCRDCPVVCHIECRDKLTL 333 (604)
T ss_pred hccCcccchhhhhhhh----hhhcccccccCCeeechhHHhcCCC
Confidence 4566789999998764 2223689999999999999887543
No 82
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=64.62 E-value=18 Score=35.08 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=47.4
Q ss_pred CCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCCC----CeEEEEcCchhHHHHHHHHHhcCCCCCCCE
Q 005250 346 GGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQY----FRVLVCGGDGTVAWVLNAIEKRNFESPPPV 417 (706)
Q Consensus 346 G~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~~----~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppv 417 (706)
|+..-..+.++....|...++ ||+.. ...|+..+++.++... ..|.++|+++-+.-|+.++.. .|.|
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~-----~PVI 82 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTT-----LPVI 82 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSS-----S-EE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccC-----CCEE
Confidence 444334566777777776665 66543 3578888888888742 246689999999999999863 4667
Q ss_pred EEeeCCCc
Q 005250 418 AVLPLGTG 425 (706)
Q Consensus 418 gILPlGTG 425 (706)
|+ |.-++
T Consensus 83 gv-P~~~~ 89 (150)
T PF00731_consen 83 GV-PVSSG 89 (150)
T ss_dssp EE-EE-ST
T ss_pred Ee-ecCcc
Confidence 76 76544
No 83
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=64.54 E-value=28 Score=38.42 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=53.8
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEE-EeccC---ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFE-LSASQ---GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~d-l~~t~---~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+.-+.+-...| ++.++...|... .+|+ +.... .-.++.+++++.+.+.||++|| |++-.+.-.+
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~i 102 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKAI 102 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 6788887766533332 233444444332 2343 21111 1234566677777788999998 6776666544
Q ss_pred Hh--------------cCCCCCCCEEEeeC--CCcchhhhhc
Q 005250 407 EK--------------RNFESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 407 ~~--------------~~~~~~ppvgILPl--GTGNDlAR~L 432 (706)
.- ....+.+|+..+|. |||-...+.-
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~a 144 (357)
T cd08181 103 AVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYS 144 (357)
T ss_pred HHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeE
Confidence 21 01123578899997 7877766643
No 84
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=62.86 E-value=31 Score=38.09 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=47.9
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEec---cCC---hhHHHHHHHhCCCC---eEEEEcCchhHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSA---SQG---PEVGLELFSNFQYF---RVLVCGGDGTVAW 401 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~---t~~---p~~al~l~~~~~~~---~Ilv~GGDGTV~~ 401 (706)
++++|+..+.... .+.+.+...|... .++.+.. ... .+.+.+.+++...+ .||++|| |++..
T Consensus 24 ~rvlvVtd~~v~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D 98 (355)
T cd08197 24 DKYLLVTDSNVED----LYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVGN 98 (355)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 5788888754322 2445555555432 2222211 111 12334445544433 5777766 88888
Q ss_pred HHHHHHhcCCCCCCCEEEeeC--CCcch
Q 005250 402 VLNAIEKRNFESPPPVAVLPL--GTGND 427 (706)
Q Consensus 402 VLn~L~~~~~~~~ppvgILPl--GTGND 427 (706)
+.-.+... +.+..|+..+|. |++.|
T Consensus 99 ~ak~~A~~-~~rgip~I~IPTTlla~~d 125 (355)
T cd08197 99 IAGLLAAL-LFRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHH-hccCCCEEEecCccccccc
Confidence 87665432 124579999998 66766
No 85
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=62.72 E-value=17 Score=40.49 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC--c--EEE-EeccCC---hhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA--Q--VFE-LSASQG---PEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--q--V~d-l~~t~~---p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++||..+.+-...| +++++...|+.. + +|+ +..... -..+.+.+++...+.||+.|| |++..+.-.
T Consensus 26 ~kr~livtd~~~~~~~g--~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 26 ISKVLLVTGKSAYKKSG--AWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CCEEEEEcCccHHhhcC--hHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 36788887766544322 334444555432 2 232 211111 234556667667788998988 666666554
Q ss_pred HHhc--------------C--CCCCCCEEEeeC--CCcchhhhhcc
Q 005250 406 IEKR--------------N--FESPPPVAVLPL--GTGNDMSRVLQ 433 (706)
Q Consensus 406 L~~~--------------~--~~~~ppvgILPl--GTGNDlAR~Lg 433 (706)
+.-. . ....+|+..+|. |||--.++.--
T Consensus 103 ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~av 148 (383)
T cd08186 103 AAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFAV 148 (383)
T ss_pred HHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeEE
Confidence 4221 0 012468888897 88877655443
No 86
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=62.41 E-value=4.3 Score=42.35 Aligned_cols=88 Identities=25% Similarity=0.466 Sum_probs=53.9
Q ss_pred CC-cccccccccc--ccccccCCCCCceeccccCcccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCc
Q 005250 81 QP-STCCVCLTSL--VLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAF 157 (706)
Q Consensus 81 ~P-~~C~vC~~~i--~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~ 157 (706)
+| .||+.|..-- --+.|. -..-..|+.||.--|..|.++...--..+. .-.|.- -....
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~--peelvscsdcgrsghpsclqft~nm~~avk-------~yrwqc---------ieck~ 283 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGM--PEELVSCSDCGRSGHPSCLQFTANMIAAVK-------TYRWQC---------IECKY 283 (336)
T ss_pred cCCcccceeccccccccccCC--chhhcchhhcCCCCCcchhhhhHHHHHHHH-------hheeee---------eecce
Confidence 44 6999997421 111221 122469999999999999998654221121 234532 23557
Q ss_pred ccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 158 CFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 158 C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
|..|+.+=.- -|=+-|-.|.+-+|--|.+
T Consensus 284 csicgtsend-----dqllfcddcdrgyhmycls 312 (336)
T KOG1244|consen 284 CSICGTSEND-----DQLLFCDDCDRGYHMYCLS 312 (336)
T ss_pred eccccCcCCC-----ceeEeecccCCceeeEecC
Confidence 7787654321 1346799999999998854
No 87
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=61.73 E-value=39 Score=37.56 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=53.9
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEE-Eecc---CChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFE-LSAS---QGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~d-l~~t---~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++||.-+.+-... .+..++...|+... +|+ +... +.-.++.+++++...+.||++|| |++-.+.-.+
T Consensus 26 ~r~livt~~~~~~~~--g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred CeEEEEeCCCchhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 678888876652122 24555555554322 242 2211 11234566777777788999998 5666655444
Q ss_pred Hhc-------------------C-CCCCCCEEEeeC--CCcchhhhhcc
Q 005250 407 EKR-------------------N-FESPPPVAVLPL--GTGNDMSRVLQ 433 (706)
Q Consensus 407 ~~~-------------------~-~~~~ppvgILPl--GTGNDlAR~Lg 433 (706)
.-. . ..+.+|+..+|. |||--..+.--
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~av 151 (380)
T cd08185 103 AFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAV 151 (380)
T ss_pred HHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEE
Confidence 211 0 113578999996 77766555443
No 88
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.82 E-value=49 Score=36.22 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=54.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EE-EeccC---ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FE-LSASQ---GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~d-l~~t~---~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
++++||..+.+ ...+.+.+...|....+ +. ..... .-+++.+.+++.+.+.||++|| |++..+.-.+...
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~~ 98 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVADR 98 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 67888887766 23567777777754333 21 11111 1233455566666788888888 8888887776543
Q ss_pred CCCCCCCEEEeeC--CCcchhhh
Q 005250 410 NFESPPPVAVLPL--GTGNDMSR 430 (706)
Q Consensus 410 ~~~~~ppvgILPl--GTGNDlAR 430 (706)
. .+|+..+|. |||-..++
T Consensus 99 ~---~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 99 L---GVPVITVPTLAATCAAWTP 118 (347)
T ss_pred h---CCCEEEecCccccCcccce
Confidence 2 468888886 66655553
No 89
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.60 E-value=5.9 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=25.5
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
||.+|.+.-. .+..++|+.|+..+|..|+....
T Consensus 1 ~C~vC~~~~~-------~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQSDD-------DGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSSCT-------TSSEEEBSTTSCEEETTTSTSSH
T ss_pred eCcCCCCcCC-------CCCeEEcCCCChhhCcccCCCCh
Confidence 6889987221 14558999999999999998754
No 90
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=59.19 E-value=33 Score=38.12 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=52.1
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cE--EE-Eecc---CChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QV--FE-LSAS---QGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV--~d-l~~t---~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+..+..-.. ...+++...|... ++ |+ +... +..+.+.+++++.+.+.||++|| |++-.+.-.+
T Consensus 29 ~~~lvv~~~~~~~~---~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVKI---GVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhhc---CcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 56777766544331 2344555555432 22 32 1111 11234566677767788999988 6666655444
Q ss_pred Hhc---------------CCCCCCCEEEeeC--CCcchhhhhcc
Q 005250 407 EKR---------------NFESPPPVAVLPL--GTGNDMSRVLQ 433 (706)
Q Consensus 407 ~~~---------------~~~~~ppvgILPl--GTGNDlAR~Lg 433 (706)
.-. .....+|+..+|. |||--..+.--
T Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 105 GIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 210 0123578999997 77776655443
No 91
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=58.50 E-value=2.2 Score=31.02 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=13.7
Q ss_pred CceeccccCcccCCCchhhhc
Q 005250 103 PVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 103 ~~~~C~~C~~~vH~~C~~~~~ 123 (706)
+-++|+.|++.||..|.....
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~ 23 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSE 23 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS
T ss_pred ceEEeCCCCCcCChhhCCccc
Confidence 347999999999999987543
No 92
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.33 E-value=11 Score=35.42 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=8.7
Q ss_pred ccccCCCCeeEe
Q 005250 63 LNVPLSHHTWME 74 (706)
Q Consensus 63 ~~~~~~~H~w~~ 74 (706)
...+..+|.|..
T Consensus 30 G~~P~~gt~w~~ 41 (130)
T PF12273_consen 30 GLQPIYGTRWMA 41 (130)
T ss_pred CCCCcCCceecC
Confidence 345677899987
No 93
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=57.79 E-value=36 Score=37.76 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=50.3
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccC----ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQ----GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~----~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++||..+.+-.. .+.+++...|.... +|+-...+ ...++.+.+++...+.||++|| |++..+.-.+
T Consensus 24 ~r~livt~~~~~~~---g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKai 99 (375)
T cd08194 24 KRPLIVTDKVMVKL---GLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKAI 99 (375)
T ss_pred CeEEEEcCcchhhc---chHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 57778876655421 13445556665432 23321111 1234566677767788999998 6776665544
Q ss_pred Hh---c-----------C-CCCCCCEEEeeC--CCcchhh
Q 005250 407 EK---R-----------N-FESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 407 ~~---~-----------~-~~~~ppvgILPl--GTGNDlA 429 (706)
.- . . .....|+..+|. |||--..
T Consensus 100 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 100 AVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred HHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 21 0 0 123468888887 5554443
No 94
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=56.29 E-value=50 Score=35.78 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccC-C---hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQ-G---PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~-~---p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
.++++||..+..-.+-.+++...++.. -...+|+....+ . -..+.+.+++...+.||++|| |++..+.-.+.-.
T Consensus 23 ~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia~~ 100 (332)
T cd07766 23 FDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAKAVAAL 100 (332)
T ss_pred CCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHHHHHHH
Confidence 367888877655442223334344332 222334322111 1 123445556556677888877 8888887766442
Q ss_pred CCCCCCCEEEeeCCCcch
Q 005250 410 NFESPPPVAVLPLGTGND 427 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGND 427 (706)
- .+.+|+..+|.=.|.+
T Consensus 101 ~-~~~~p~i~iPTt~~tg 117 (332)
T cd07766 101 L-NRGLPIIIVPTTAATG 117 (332)
T ss_pred h-cCCCCEEEEeCCCchh
Confidence 1 2367999999744333
No 95
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=55.24 E-value=9.6 Score=28.77 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=16.6
Q ss_pred ccccCCCcCcCccCCCCceeec--ccccccchhhhhhccc
Q 005250 158 CFYCDEPCGVPFINDCPTWHCL--WCQRRIHVKCHAIMSK 195 (706)
Q Consensus 158 C~~C~k~c~~~~~~g~~~~~C~--WC~~~vH~~C~~~~~~ 195 (706)
|..|++..- +|.+|. -|...+|..|......
T Consensus 1 C~~C~~iv~-------~G~~C~~~~C~~r~H~~C~~~y~r 33 (43)
T PF08746_consen 1 CEACKEIVT-------QGQRCSNRDCNVRLHDDCFKKYFR 33 (43)
T ss_dssp -TTT-SB-S-------SSEE-SS--S--EE-HHHHHHHTT
T ss_pred CcccchhHe-------eeccCCCCccCchHHHHHHHHHHh
Confidence 566755322 469999 7999999999975543
No 96
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=54.66 E-value=55 Score=35.96 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=48.4
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCC---CcEEEEec---cCChh---HHHHHHHhCC---CCeEEEEcCchhHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNP---AQVFELSA---SQGPE---VGLELFSNFQ---YFRVLVCGGDGTVAWV 402 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp---~qV~dl~~---t~~p~---~al~l~~~~~---~~~Ilv~GGDGTV~~V 402 (706)
++++|+..+.-.. .+.+.+...|+. ..++.+.. ....+ .+.+.+++.. .+.||+.|| |++..+
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~ 98 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATGDV 98 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHHH
Confidence 5777887754433 244555555532 23322221 11122 2334455433 456777776 888887
Q ss_pred HHHHHhcCCCCCCCEEEeeC--CCcchh
Q 005250 403 LNAIEKRNFESPPPVAVLPL--GTGNDM 428 (706)
Q Consensus 403 Ln~L~~~~~~~~ppvgILPl--GTGNDl 428 (706)
.-.+...- .+..|+..+|. ++++|-
T Consensus 99 ak~vA~~~-~rgip~i~VPTTlla~~ds 125 (344)
T cd08169 99 AGFVASTL-FRGIAFIRVPTTLLAQSDS 125 (344)
T ss_pred HHHHHHHh-ccCCcEEEecCCccccccc
Confidence 76654321 24679999998 677773
No 97
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=54.33 E-value=7 Score=28.09 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=16.2
Q ss_pred ccccccccccccccccCCCCCceeccccCcc
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
.||..|...+.-..--|.+..++-|..|+++
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred CccccccChhhhhcCCCCCccceECCCCCCE
Confidence 3899999877422112345788999999964
No 98
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=53.91 E-value=26 Score=38.44 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E--EEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V--FELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V--~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++||..+.+- .....++...|+... + |+....+. -+.+.+++++...+.||+.|| |++..+.-.+
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 567777665443 234566666665433 2 33221111 233455566656788999998 7888877766
Q ss_pred HhcCCCCCCCEEEeeC--CCcc
Q 005250 407 EKRNFESPPPVAVLPL--GTGN 426 (706)
Q Consensus 407 ~~~~~~~~ppvgILPl--GTGN 426 (706)
.-. ...|+..+|. |||-
T Consensus 98 a~~---~~~p~i~VPTt~gtgs 116 (345)
T cd08171 98 ADK---LGKPVFTFPTIASNCA 116 (345)
T ss_pred HHH---cCCCEEEecCccccCc
Confidence 432 2468888887 4443
No 99
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=53.42 E-value=57 Score=36.27 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCC----CcEEEEeccCCh-----hHHHHHHHhCCCCeEEEEcCchhHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNP----AQVFELSASQGP-----EVGLELFSNFQYFRVLVCGGDGTVAWVLN 404 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp----~qV~dl~~t~~p-----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn 404 (706)
.++++|+.-+..-.. .+.+++...|+. ..+|+-. ...| .++.+++++.+.+.||++|| |++-.+.-
T Consensus 30 ~~~~lvvtd~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 30 FKKALIVTDKTLVKC---GVVAKVTDVLDAAGLAYEIYDGV-KPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CCEEEEEeCcchhhC---cchHHHHHHHHHCCCeEEEeCCC-CCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 367788876533221 134455555543 2234311 1122 34666777777788998988 66666664
Q ss_pred HHH---hc--------------CCCCCCCEEEeeC--CCcchhhhhc
Q 005250 405 AIE---KR--------------NFESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 405 ~L~---~~--------------~~~~~ppvgILPl--GTGNDlAR~L 432 (706)
++. .. ...+.+|+..+|. |||--..+..
T Consensus 105 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~a 151 (382)
T PRK10624 105 AIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINY 151 (382)
T ss_pred HHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhccee
Confidence 321 10 0123478899997 6666555443
No 100
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=52.96 E-value=90 Score=34.37 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=51.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--EEE-EeccC---ChhHHHHHHHhCC--CCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--VFE-LSASQ---GPEVGLELFSNFQ--YFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V~d-l~~t~---~p~~al~l~~~~~--~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+..+..... .++.++...|.... +|+ +.... .-.++.+++++.. .+.||++|| |++-.+.-.+
T Consensus 24 ~r~lvVtd~~~~~~---g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~aK~i 99 (355)
T TIGR03405 24 RRVVVVTFPEARAL---GLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTAKVL 99 (355)
T ss_pred CeEEEEECcchhhc---chHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHH
Confidence 67778776543221 24555666665433 343 21111 1234556666655 678999988 6666665443
Q ss_pred Hhc---C----------------CCCCCCEEEeeC--CCcchhhhhc
Q 005250 407 EKR---N----------------FESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 407 ~~~---~----------------~~~~ppvgILPl--GTGNDlAR~L 432 (706)
.-. . ..+.+|+..+|. |||-...+.-
T Consensus 100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~a 146 (355)
T TIGR03405 100 AVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPWA 146 (355)
T ss_pred HHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCeE
Confidence 211 0 113468888887 7776665543
No 101
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=52.26 E-value=2.7 Score=44.76 Aligned_cols=42 Identities=17% Similarity=0.445 Sum_probs=34.1
Q ss_pred CCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 152 AELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 152 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
+..++.|+.|+.-.++.+. +|++|.-|+.+.|-+|...+..+
T Consensus 59 ~~~~~~~~~c~~~~~~vl~---egL~c~~c~~tch~rcr~lv~ld 100 (348)
T KOG4239|consen 59 LLLPTWCDKCGDFIWGVLR---EGLLCIHCKFTCHIRCRMLVDLD 100 (348)
T ss_pred ccccccchhhhHHHHHHHH---HHHhhhhcCCccCHHHHhhhhhh
Confidence 4457899999887776554 46999999999999999887654
No 102
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=51.89 E-value=75 Score=34.52 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=49.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEec--cCChhHHHHHHHhCC-CCeEEEEcCchhHHHHHHHHHhcCC
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSA--SQGPEVGLELFSNFQ-YFRVLVCGGDGTVAWVLNAIEKRNF 411 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~--t~~p~~al~l~~~~~-~~~Ilv~GGDGTV~~VLn~L~~~~~ 411 (706)
++++||..+.. ..++.+.++.... ..++.+.. ....+...+.++... .+.||++|| |++..+.-.+...
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA~~-- 97 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAAFL-- 97 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHhh--
Confidence 67888887665 3344444443322 12222221 223445556666653 677888887 8888888776542
Q ss_pred CCCCCEEEeeCCCcc
Q 005250 412 ESPPPVAVLPLGTGN 426 (706)
Q Consensus 412 ~~~ppvgILPlGTGN 426 (706)
..+|+..+|.=.++
T Consensus 98 -~~~p~i~vPTt~~t 111 (331)
T cd08174 98 -RGIPLSVPTTNLND 111 (331)
T ss_pred -cCCCEEEecCcccc
Confidence 46899999975444
No 103
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=51.64 E-value=54 Score=35.79 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=49.8
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC-c--EEEEeccCChhH---HHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA-Q--VFELSASQGPEV---GLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~-q--V~dl~~t~~p~~---al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+.... .+.+++...|+.. . +| +......+. +.+.+++...+.||++|| |++..+.-.+.-
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a~ 99 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVV-IVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAAY 99 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHHH
Confidence 5778888765433 3555666666433 2 23 222222332 334444445678888887 888888877653
Q ss_pred cCCCCCCCEEEeeCCCcch
Q 005250 409 RNFESPPPVAVLPLGTGND 427 (706)
Q Consensus 409 ~~~~~~ppvgILPlGTGND 427 (706)
. ..+|+..+|.=.++|
T Consensus 100 ~---~~~p~i~iPTT~~t~ 115 (339)
T cd08173 100 K---LGIPFISVPTAASHD 115 (339)
T ss_pred h---cCCCEEEecCcccCC
Confidence 2 457899999755543
No 104
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=50.95 E-value=64 Score=35.59 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEE-EeccCC---hhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFE-LSASQG---PEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~d-l~~t~~---p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++|+.-+.+-.. ...+.+...|... .+|+ +..... -..+.+.+++...+.||+.|| |++-.+.-.
T Consensus 23 ~~~~lvv~~~~~~~~---~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 23 GRKALIVTDPGLVKT---GVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CCeEEEEeCcchhhC---ccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 367788877665441 2334444444432 2233 211111 223555566656678888888 666666554
Q ss_pred HHhcC---------------CCCCCCEEEeeC--CCcchhhhhc
Q 005250 406 IEKRN---------------FESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 406 L~~~~---------------~~~~ppvgILPl--GTGNDlAR~L 432 (706)
+.-.- ..+..|+..+|. |||--..+..
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~a 142 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFA 142 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeE
Confidence 42110 012568999998 5664444443
No 105
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=50.85 E-value=55 Score=36.39 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=52.9
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cE--EEEeccC----ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QV--FELSASQ----GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV--~dl~~t~----~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++.+||.-+.+.... .++.++...|... ++ |+-.... ...++.++++....+.||++|| |++-.+.-++
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 105 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKAI 105 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHH
Confidence 567777665554322 2345555555432 22 4311111 1234667777777889999998 6766666554
Q ss_pred Hhc---------------CCCCCCCEEEeeC--CCcchhhhhc
Q 005250 407 EKR---------------NFESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 407 ~~~---------------~~~~~ppvgILPl--GTGNDlAR~L 432 (706)
.-. .....+|+..+|. |||--..+.-
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~a 148 (382)
T cd08187 106 AAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGA 148 (382)
T ss_pred HhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCE
Confidence 221 0023568888896 6775554443
No 106
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=50.08 E-value=60 Score=35.86 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=36.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEeccC----ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSASQ----GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~t~----~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+.-+..-.. ...+++...|... .+|+-.... .-.++.+.+++...+.||++|| |++-.+.-.+
T Consensus 25 ~~~liv~~~~~~~~---~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~i 100 (370)
T cd08192 25 KRPLIVTDPGLAAL---GLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKAV 100 (370)
T ss_pred CeEEEEcCcchhhC---ccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 56777766543221 1344555555432 234311111 1234566667667788999988 6776666554
No 107
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=49.95 E-value=37 Score=37.64 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=48.9
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEec-cC---ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSA-SQ---GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~-t~---~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+.-+.+-... .+..++...|+... +|+-.. .. .-.++.+++++.+.+.||++|| |++-.+.-++
T Consensus 24 ~r~livt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~i 100 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKAM 100 (375)
T ss_pred CeEEEEeCchHHHhC--ChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 566777654433222 23445555554322 243211 11 1234566777767788999988 5555555443
Q ss_pred Hh---c---------------CCCCCCCEEEeeC--CCcchhhh
Q 005250 407 EK---R---------------NFESPPPVAVLPL--GTGNDMSR 430 (706)
Q Consensus 407 ~~---~---------------~~~~~ppvgILPl--GTGNDlAR 430 (706)
.- . ...+.+|+..+|. |||--...
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~ 144 (375)
T cd08179 101 WIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTA 144 (375)
T ss_pred HHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCC
Confidence 21 0 0112458888887 67655443
No 108
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=49.90 E-value=3.6 Score=39.33 Aligned_cols=17 Identities=47% Similarity=0.716 Sum_probs=13.4
Q ss_pred EEcCchhHHHHHHHHHh
Q 005250 392 VCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 392 v~GGDGTV~~VLn~L~~ 408 (706)
--|||||++|+-+.-.+
T Consensus 130 gdGGDGT~hW~Yd~QEd 146 (180)
T PLN00180 130 GDGGDGTGHWVYERQED 146 (180)
T ss_pred ccCCCCceeeEeehHHH
Confidence 46999999999775544
No 109
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=49.57 E-value=71 Score=35.24 Aligned_cols=52 Identities=33% Similarity=0.543 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc-------------------CCCCCCCEEEeeC--CCcchhh
Q 005250 377 VGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR-------------------NFESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 377 ~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~-------------------~~~~~ppvgILPl--GTGNDlA 429 (706)
++.+++++...+.||++|| |++..+.-.+.-. ...+.+|+..+|. |||--.+
T Consensus 68 ~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 140 (367)
T cd08182 68 AGIRLLREFGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVT 140 (367)
T ss_pred HHHHHHHhcCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhC
Confidence 4666777767788888888 6666665554221 0123578888897 5554433
No 110
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.31 E-value=64 Score=35.77 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccC----ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQ----GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~----~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++|+..+..-.. .+++++...|.... +|+-.... ...++.+++++.+.+.||++|| |++-.+.-.
T Consensus 26 ~~~~lvvt~~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 26 VKKVLIVTDKGLVKL---GLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred CCeEEEEeCcchhhc---ccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 367888876544321 23445555554432 23211111 1235667777777788999988 566555544
Q ss_pred HHhc---C-------------CCCCCCEEEeeC--CCcchhhhh
Q 005250 406 IEKR---N-------------FESPPPVAVLPL--GTGNDMSRV 431 (706)
Q Consensus 406 L~~~---~-------------~~~~ppvgILPl--GTGNDlAR~ 431 (706)
+.-. . ..+.+|+..+|. |||-...+.
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 102 IAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred HHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 3211 0 012368888886 666554443
No 111
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=49.29 E-value=9.3 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=22.4
Q ss_pred cccccccccccccccCCCCCceecccc-CcccCCCchhh
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVC-GVAAHFFCSEF 121 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C-~~~vH~~C~~~ 121 (706)
.|+.|.+.|.| .+|+|..| .+-.+..|...
T Consensus 2 ~Cd~C~~~i~G--------~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVG--------VRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcC--------CeEECCCCCCccchHHhhCc
Confidence 69999996643 34899999 67777777653
No 112
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=49.07 E-value=12 Score=40.24 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEe--eCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhh
Q 005250 387 YFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVL--PLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAA 458 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgIL--PlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~ 458 (706)
.+.|+.+|||||.=-..+-+.+ ...|.|||= |.|+---+ -++..|+. ++...|..+..+.
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg~l----cL~~~~~~-----n~~~al~k~~sgn 167 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEGHL----CLPDKYPS-----NPAGALCKLTSGN 167 (395)
T ss_pred hhEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcceE----eccccCCC-----CcHHHHHHHHhcc
Confidence 3679999999999877774433 246888884 66665443 34445552 3445566555553
No 113
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=47.57 E-value=74 Score=35.34 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCCh-----hHHHHHHHhCCCCeEEEEcCchhHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQGP-----EVGLELFSNFQYFRVLVCGGDGTVAWVLN 404 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~p-----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn 404 (706)
.++++|+.-+..-.. .+..++...|.... +|+-.. ..| .++.+++++.+.+.||++|| |++-.+.-
T Consensus 29 ~~r~lvvt~~~~~~~---g~~~~v~~~L~~~~i~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 29 FKKALVVTDKDLIKF---GVADKVTDLLDEAGIAYELFDEVK-PNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred CCEEEEEcCcchhhc---cchHHHHHHHHHCCCeEEEECCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 367778776533221 24455555554322 232111 122 33566677767788999988 66666654
Q ss_pred HHHh---cC--------------CCCCCCEEEeeC--CCcchhhhhc
Q 005250 405 AIEK---RN--------------FESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 405 ~L~~---~~--------------~~~~ppvgILPl--GTGNDlAR~L 432 (706)
++.- .. ..+.+|+..+|. |||--..+..
T Consensus 104 aia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 104 AIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred HHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 3321 00 123478888887 6665544443
No 114
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.41 E-value=16 Score=34.08 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=13.5
Q ss_pred cchhhHHHHHHHHHHHHHHh
Q 005250 20 YGPFFFGSFGLLAILYASFK 39 (706)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ 39 (706)
+-++++|+||++.+++++.+
T Consensus 70 i~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34778888887776655543
No 115
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=46.95 E-value=55 Score=37.54 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=37.6
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHH---HHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLN---AIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn---~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
...+.+.+++..-..++++|||||..-+.. .+.+.+ ...+|.-||-==-||+.
T Consensus 165 ~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g--~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 165 PKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRK--LNISVVGIPKTIDNDIP 220 (459)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCC
Confidence 344555556556678999999999986643 333333 35788889999999986
No 116
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=46.62 E-value=58 Score=35.89 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEecc-CCh-----hHHHHHHHhCC---CCeEEEEcCchhHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSAS-QGP-----EVGLELFSNFQ---YFRVLVCGGDGTVA 400 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t-~~p-----~~al~l~~~~~---~~~Ilv~GGDGTV~ 400 (706)
.++++||..+.... .+.+++...|.... +|.+... ..| ..+.+.+++.+ .+.||++|| |++.
T Consensus 31 ~~~~livtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~ 105 (358)
T PRK00002 31 GKKVAIVTDETVAP----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVIG 105 (358)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHHH
Confidence 36788888655422 35666666665432 2222211 111 23344455443 366777776 8888
Q ss_pred HHHHHHHhcCCCCCCCEEEeeC--CCcch
Q 005250 401 WVLNAIEKRNFESPPPVAVLPL--GTGND 427 (706)
Q Consensus 401 ~VLn~L~~~~~~~~ppvgILPl--GTGND 427 (706)
.+.-.+... +...+|+..+|. ++.+|
T Consensus 106 D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 106 DLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred HHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 888766421 124678999997 45544
No 117
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=45.77 E-value=80 Score=35.22 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEecc----CChhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSAS----QGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t----~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++|+.-+..-. ..++.++...|.... +|+-... +.-+++.+++++...+.||++|| |++-.+.-+
T Consensus 31 ~~~~livt~~~~~~---~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK~ 106 (383)
T PRK09860 31 FTRTLIVTDNMLTK---LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAKG 106 (383)
T ss_pred CCEEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 35676665431111 124455666665433 2331110 11245667778777889999998 444444433
Q ss_pred HHh---c------------CCCCCCCEEEeeC--CCcchhhhhccc
Q 005250 406 IEK---R------------NFESPPPVAVLPL--GTGNDMSRVLQW 434 (706)
Q Consensus 406 L~~---~------------~~~~~ppvgILPl--GTGNDlAR~Lgw 434 (706)
+.- . .....+|+..+|. |||--..+.--+
T Consensus 107 ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 107 IALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred HHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 321 0 0123578999997 888766655543
No 118
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.62 E-value=9.2 Score=35.44 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=12.7
Q ss_pred CCCCCCCCcccccCCC
Q 005250 149 DDNAELSAFCFYCDEP 164 (706)
Q Consensus 149 ~~n~~~~~~C~~C~k~ 164 (706)
.|.|..++||..|++.
T Consensus 62 g~dye~psfchncgs~ 77 (160)
T COG4306 62 GGDYEPPSFCHNCGSR 77 (160)
T ss_pred CCCCCCcchhhcCCCC
Confidence 3678889999999554
No 119
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=45.62 E-value=7.7 Score=43.92 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=37.4
Q ss_pred cCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcc
Q 005250 66 PLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAK 124 (706)
Q Consensus 66 ~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~ 124 (706)
+...=.|...+...-+ |+||.....+.+ .+-++|.-|+--.|..|++-..+
T Consensus 155 ~~~~l~wD~~~~~n~q---c~vC~~g~~~~~-----NrmlqC~~C~~~fHq~Chqp~i~ 205 (464)
T KOG4323|consen 155 PEASLDWDSGHKVNLQ---CSVCYCGGPGAG-----NRMLQCDKCRQWYHQACHQPLIK 205 (464)
T ss_pred cccccccCccccccce---eeeeecCCcCcc-----ceeeeecccccHHHHHhccCCCC
Confidence 4445567776654323 999998876644 46689999999999999986543
No 120
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=44.41 E-value=46 Score=36.49 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=50.6
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCC---hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQG---PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~---p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++.+|+..+.+-. ...+++...|.... ++.+..... -..+.+++++...+.||++|| |++..+.-.+.
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia 97 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVA 97 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHH
Confidence 5667777655433 34455555565432 222221111 224556666666788888888 78888877765
Q ss_pred hcCCCCCCCEEEeeC--CCcchhh
Q 005250 408 KRNFESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 408 ~~~~~~~ppvgILPl--GTGNDlA 429 (706)
.. ...|+..+|. |||-...
T Consensus 98 ~~---~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 98 DR---LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred HH---cCCCEEEeCCccccCcccc
Confidence 32 2468999997 5554443
No 121
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=43.28 E-value=10 Score=47.18 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=34.0
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
.|++|-.|...+|.. ...|..|.++.|++|...+...|.-
T Consensus 555 ~P~~c~~c~~~~~~~--------~~~c~~c~~~chkkc~~~~~~~~~~ 594 (918)
T KOG1453|consen 555 KPAPCRTCETYSWFM--------ELECELCRLVCHKKCLEALKSLCGH 594 (918)
T ss_pred CCcccccccccchhh--------hcccceeeeeccccchhhccccCcc
Confidence 499999999988642 1689999999999999999888843
No 122
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=42.69 E-value=17 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=22.8
Q ss_pred cccccCCCcCcCccCCCCceeecccccccchhhhhh
Q 005250 157 FCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 157 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
+|.+|++.-.. ..-+.|.-|.+.+|..|...
T Consensus 1 ~C~vC~~~~~~-----~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDD-----GDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTT-----SSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCC-----CCeEEcCCCChhhCcccCCC
Confidence 58888773221 13479999999999999764
No 123
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.56 E-value=67 Score=35.21 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=51.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E-EEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V-FELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V-~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++.+|+.=+.+. ..+.+++...|...+ + |+....+. -..+.+.+++...+.||++|| |++-.+.-.+.
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHH
Confidence 566666533222 246667777776543 2 33221111 234556666667788999998 77777766664
Q ss_pred hcCCCCCCCEEEeeC--CCcchhhh
Q 005250 408 KRNFESPPPVAVLPL--GTGNDMSR 430 (706)
Q Consensus 408 ~~~~~~~ppvgILPl--GTGNDlAR 430 (706)
-. ..+|+..+|. |||--...
T Consensus 98 ~~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 98 DY---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred HH---cCCCEEEeCCccccCccccc
Confidence 32 2578888887 66654443
No 124
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=42.07 E-value=12 Score=46.52 Aligned_cols=36 Identities=28% Similarity=0.659 Sum_probs=28.1
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-+..|++|.+--. +. ....++|+.|++.||..|...
T Consensus 218 ~D~~C~iC~~~~~--~n---~n~ivfCD~Cnl~VHq~Cygi 253 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC--QN---SNVIVFCDGCNLAVHQECYGI 253 (1051)
T ss_pred CCccceeeccccc--CC---CceEEEcCCCcchhhhhccCC
Confidence 5679999998553 21 145689999999999999983
No 125
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=42.01 E-value=7.8 Score=44.28 Aligned_cols=58 Identities=24% Similarity=0.516 Sum_probs=41.0
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVC 201 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~C 201 (706)
...|-|.+- | .++.+|.+=.+.|..-|...-.--+|.-|+..||..|.+++.+ +.-.|
T Consensus 167 ~gEHvWlet------n-vsgd~CYvGE~~C~~r~~kS~~rRkCAaCkIVvHT~CieqLeK-iNfrC 224 (1004)
T KOG0782|consen 167 DGEHVWLET------N-VSGDECYVGEKDCRVRFAKSGERRKCAACKIVVHTNCIEQLEK-INFRC 224 (1004)
T ss_pred CceeEEEec------c-cCCceeeechHHHHHHHhhhhhhccceeeeEEEechHHHHHHH-hcccc
Confidence 467999983 3 3467999988888743322112368999999999999998865 23344
No 126
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=41.72 E-value=10 Score=28.60 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=16.4
Q ss_pred ccccccccccccccCCCCCceecc--ccCcccCCCchhhh
Q 005250 85 CCVCLTSLVLPQSVGAHFPVHRCA--VCGVAAHFFCSEFT 122 (706)
Q Consensus 85 C~vC~~~i~g~~~lG~~~~~~~C~--~C~~~vH~~C~~~~ 122 (706)
|.+|.+.+. +| .+|+ .|+...|..|...-
T Consensus 1 C~~C~~iv~--~G-------~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVT--QG-------QRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-S--SS-------EE-SS--S--EE-HHHHHHH
T ss_pred CcccchhHe--ee-------ccCCCCccCchHHHHHHHHH
Confidence 788988763 33 7999 69999999998763
No 127
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=41.72 E-value=12 Score=27.23 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=12.0
Q ss_pred eeecccccccchhhhhh
Q 005250 176 WHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 176 ~~C~WC~~~vH~~C~~~ 192 (706)
++|..|...||..|...
T Consensus 5 l~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 5 LFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EE-SSS--EEEHHHHT-
T ss_pred EEeCCCCCcCChhhCCc
Confidence 78999999999999864
No 128
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=41.60 E-value=95 Score=34.13 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=48.0
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC-cEEE-EeccCChh---HHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA-QVFE-LSASQGPE---VGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~-qV~d-l~~t~~p~---~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
++++||..+.+... ..+.+...|... .++. +......+ .+.+.+++...+.||++|| |++..+.-.+.-
T Consensus 35 ~~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA~- 108 (350)
T PRK00843 35 GRALIVTGPTTKKI----AGDRVEENLEDAGDVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAAY- 108 (350)
T ss_pred CeEEEEECCcHHHH----HHHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHHH-
Confidence 57888888766543 233444444321 2211 22222223 2334444445677888887 888888776642
Q ss_pred CCCCCCCEEEeeCCCcch
Q 005250 410 NFESPPPVAVLPLGTGND 427 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGND 427 (706)
....|+..+|.=-++|
T Consensus 109 --~rgip~I~IPTT~~td 124 (350)
T PRK00843 109 --RLGIPFISVPTAASHD 124 (350)
T ss_pred --hcCCCEEEeCCCccCC
Confidence 2467899999754444
No 129
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=41.33 E-value=1.1e+02 Score=33.45 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=45.6
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E--EEEeccC-C-----hhHHHHHHHhCCC---CeEEEEcCchhHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V--FELSASQ-G-----PEVGLELFSNFQY---FRVLVCGGDGTVAW 401 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V--~dl~~t~-~-----p~~al~l~~~~~~---~~Ilv~GGDGTV~~ 401 (706)
++++||..+..-. .+.+++...|+... + +.+...+ . -..+.+.+++.+. +.||++|| |++..
T Consensus 21 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 95 (344)
T TIGR01357 21 SKLVIITDETVAD----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVVGD 95 (344)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHHHH
Confidence 6788887654432 25556666665432 1 2222111 1 2234455555432 56777877 78888
Q ss_pred HHHHHHhcCCCCCCCEEEeeC
Q 005250 402 VLNAIEKRNFESPPPVAVLPL 422 (706)
Q Consensus 402 VLn~L~~~~~~~~ppvgILPl 422 (706)
+.-.+...- ...+|+..+|.
T Consensus 96 ~aK~iA~~~-~~~~p~i~VPT 115 (344)
T TIGR01357 96 LAGFVAATY-MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHH-ccCCCEEEecC
Confidence 776664211 24578999997
No 130
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=40.74 E-value=1.1e+02 Score=34.30 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=35.1
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--------------------------CCCCCCCEEEeeC--CCcch
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--------------------------NFESPPPVAVLPL--GTGND 427 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--------------------------~~~~~ppvgILPl--GTGND 427 (706)
+++.+++++.+.+.||+.|| |++..+.-.+.-. ...+.+|+..+|. |||-.
T Consensus 68 ~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE 146 (398)
T cd08178 68 RKGLELMNSFKPDTIIALGG-GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSE 146 (398)
T ss_pred HHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCccccc
Confidence 34666777767789999998 5555555443210 0013468889996 77766
Q ss_pred hhhhcc
Q 005250 428 MSRVLQ 433 (706)
Q Consensus 428 lAR~Lg 433 (706)
..+..-
T Consensus 147 ~t~~av 152 (398)
T cd08178 147 VTPFAV 152 (398)
T ss_pred ccCeEE
Confidence 555443
No 131
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.34 E-value=1.1e+02 Score=33.96 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC--c--EEE-EeccC---ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA--Q--VFE-LSASQ---GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--q--V~d-l~~t~---~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++|+.-+..-.. .+.+++...|... . +|+ +.... ....+.+.+++...+.||++|| |++-.+.-+
T Consensus 28 ~~~~livt~~~~~~~---~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ 103 (377)
T cd08188 28 AKKVLLVSDPGVIKA---GWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKG 103 (377)
T ss_pred CCeEEEEeCcchhhC---ccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 357777765432221 1344555555432 2 233 22111 1233556677667788999988 666666633
Q ss_pred H---Hhc-----------CC-CCCCCEEEeeC--CCcchhhh
Q 005250 406 I---EKR-----------NF-ESPPPVAVLPL--GTGNDMSR 430 (706)
Q Consensus 406 L---~~~-----------~~-~~~ppvgILPl--GTGNDlAR 430 (706)
+ ... .. .+.+|+..+|. |||--.++
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 104 IGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 3 111 00 12468888987 77765555
No 132
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=40.33 E-value=14 Score=43.46 Aligned_cols=34 Identities=35% Similarity=0.692 Sum_probs=25.0
Q ss_pred ccccccccccccccCCCCCceecc--ccCcccCCCchhhhc
Q 005250 85 CCVCLTSLVLPQSVGAHFPVHRCA--VCGVAAHFFCSEFTA 123 (706)
Q Consensus 85 C~vC~~~i~g~~~lG~~~~~~~C~--~C~~~vH~~C~~~~~ 123 (706)
||||.+--. | .+.+-..|+ .|.++||..|...+.
T Consensus 8 CCVCSDErG--W---aeNPLVYCDG~nCsVAVHQaCYGIvq 43 (900)
T KOG0956|consen 8 CCVCSDERG--W---AENPLVYCDGHNCSVAVHQACYGIVQ 43 (900)
T ss_pred eeeecCcCC--C---ccCceeeecCCCceeeeehhcceeEe
Confidence 999987531 2 124557887 799999999987654
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.93 E-value=16 Score=29.13 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=27.9
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
.-|.+|.+-+... .....|..|+...|..|...+-
T Consensus 6 ~~C~~Cg~~~~~~------dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKFKDG------DDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcccCC------CCEEECCCCCCcccHHHHhhCC
Confidence 4699999877411 4568999999999999997753
No 134
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=39.89 E-value=1.2e+02 Score=33.48 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=50.0
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEeccCC---hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSASQG---PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~t~~---p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++++||..+.+. ...++...|... .+|++..... -.++.+++++...+.||++|| |++..+.-.+.
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ia 95 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAIA 95 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHHH
Confidence 577888776554 444555555432 2354322111 224556667667788999988 66666654432
Q ss_pred hc--------------C-----CCCCCCEEEeeC--CCcchhhh
Q 005250 408 KR--------------N-----FESPPPVAVLPL--GTGNDMSR 430 (706)
Q Consensus 408 ~~--------------~-----~~~~ppvgILPl--GTGNDlAR 430 (706)
-. . ..+.+|+..+|. |||--..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 96 ALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 10 0 013468888886 56655544
No 135
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=38.66 E-value=19 Score=31.93 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=22.4
Q ss_pred CCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 153 ELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 153 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
.....|.+|++.++.+. +---=|+..||..|..
T Consensus 76 ~~~~~C~vC~k~l~~~~------f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSV------FVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCce------EEEeCCCeEEeccccc
Confidence 34678999999987533 1122245789999964
No 137
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=38.59 E-value=1.6e+02 Score=32.91 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=58.9
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++.|||--|.-- ...+++.+...|+..+ ||+-...+.+ ..+.+.+++...+.||+.|| |++-.+.-+
T Consensus 29 ~~r~liVTd~~~~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~ 104 (377)
T COG1454 29 AKRALIVTDRGLA---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKA 104 (377)
T ss_pred CCceEEEECCccc---cchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 4677788776422 2246677777777655 4443221221 34667888888999999999 555555544
Q ss_pred HHhc---C------------CCCCCCEEEeeC--CCcchhhhhccc
Q 005250 406 IEKR---N------------FESPPPVAVLPL--GTGNDMSRVLQW 434 (706)
Q Consensus 406 L~~~---~------------~~~~ppvgILPl--GTGNDlAR~Lgw 434 (706)
+.-. . -.+.+|+..||. |||-...+.--+
T Consensus 105 i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVi 150 (377)
T COG1454 105 IALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVI 150 (377)
T ss_pred HHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEE
Confidence 4211 0 112367888885 888887766654
No 138
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=38.57 E-value=15 Score=39.08 Aligned_cols=103 Identities=23% Similarity=0.528 Sum_probs=57.1
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccccccc--cc---cccc------ceeee-eecC
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQAC--FS---HVKH------HWSER-WVNM 148 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~--~~---~~~H------~W~~~-~~~~ 148 (706)
-|++|. |...+.+ -||.|.+|+..| |.- +..|++.+..- +. -..| .|+|. |
T Consensus 294 ~Ps~Ca-CHs~~~~--------gGy~CP~CktkV---CsL--Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~--- 356 (421)
T COG5151 294 LPSVCA-CHSEVKG--------GGYECPVCKTKV---CSL--PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPE--- 356 (421)
T ss_pred Ccccee-eeeeecc--------CceeCCccccee---ecC--CccCcchhHHHHHHHHHHHHHHhhccCcccccccC---
Confidence 477765 5544432 249999999766 442 34455443211 00 1122 35552 2
Q ss_pred CCCCCCCCcccccCCCcC----cCccC--CCCceeecccccccchhhhhhcccCCCCCCC
Q 005250 149 DDNAELSAFCFYCDEPCG----VPFIN--DCPTWHCLWCQRRIHVKCHAIMSKESGDVCD 202 (706)
Q Consensus 149 ~~n~~~~~~C~~C~k~c~----~~~~~--g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cd 202 (706)
+.-+.++.|.+|.-++- ++|-- .+..|+|.-|+.++-.+|--+. +++-..|.
T Consensus 357 -~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfi-He~Lh~C~ 414 (421)
T COG5151 357 -GTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFI-HETLHFCI 414 (421)
T ss_pred -CCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHH-HHHHhhCC
Confidence 23356789999977542 22211 1246999999999999985433 33333453
No 139
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=37.43 E-value=31 Score=35.84 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCCCCcccccCCCcC---cCccCCCCceeecccccccchhhhhhcccCCCCCCCCCCCCCceeCCCcc
Q 005250 152 AELSAFCFYCDEPCG---VPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDLGPHRRLILSPLCV 216 (706)
Q Consensus 152 ~~~~~~C~~C~k~c~---~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~~~~IlpP~~i 216 (706)
...-++|..|++... ...-+|+.-|+|.-|+.++-.-+...++.. .--|..=.+-.-||||.|-
T Consensus 129 rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~~qm~v~sP-Cy~C~~~v~P~~IlPPr~~ 195 (278)
T PF15135_consen 129 RKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGFAQMGVPSP-CYGCGNPVYPSRILPPRWD 195 (278)
T ss_pred ccccccccccccccCCCccccccceeeeecccccccchhhhhcCCCCC-ccCCCCccCcccccCCCcC
Confidence 344567888877532 222344445788888877776665544432 1124555566778888874
No 140
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=36.57 E-value=94 Score=35.51 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHH---HHhcCCCCCCCEEEeeCCCcchhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNA---IEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~---L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
+.+.+.+++..-..++++|||||+.-+..- +.+.+ ...+|.-||-==-||+.
T Consensus 162 ~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g--~~I~VIGIPKTIDNDi~ 216 (443)
T PRK06830 162 EEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRG--LKISVIGIPKTIDNDIN 216 (443)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCc
Confidence 445555565566789999999999776532 22232 34788889988899986
No 141
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=36.48 E-value=25 Score=26.52 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=22.6
Q ss_pred cccccCCCcCcCccCCCCceeeccc-ccccchhhhhh
Q 005250 157 FCFYCDEPCGVPFINDCPTWHCLWC-QRRIHVKCHAI 192 (706)
Q Consensus 157 ~C~~C~k~c~~~~~~g~~~~~C~WC-~~~vH~~C~~~ 192 (706)
.|+.|++++.+. -|+|.-| ...++.+|...
T Consensus 2 ~Cd~C~~~i~G~------ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGV------RYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCC------eEECCCCCCccchHHhhCc
Confidence 699998865442 3899999 57788888653
No 142
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=36.32 E-value=91 Score=34.13 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=45.6
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEec---cCChh---HHHHHHHhCCC---CeEEEEcCchhHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSA---SQGPE---VGLELFSNFQY---FRVLVCGGDGTVAW 401 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~---t~~p~---~al~l~~~~~~---~~Ilv~GGDGTV~~ 401 (706)
++++|+..+..-. .+.+++...|+.. .++.+.. ....+ .+.+.+++... +.||++|| |++..
T Consensus 25 ~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D 99 (345)
T cd08195 25 SKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVVGD 99 (345)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHHHh
Confidence 6788888765543 3555666666543 2233321 11122 23344444433 56777776 88888
Q ss_pred HHHHHHhcCCCCCCCEEEeeC
Q 005250 402 VLNAIEKRNFESPPPVAVLPL 422 (706)
Q Consensus 402 VLn~L~~~~~~~~ppvgILPl 422 (706)
+.-.+... +.+.+|+..+|.
T Consensus 100 ~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 100 LAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHH-HhcCCCeEEcch
Confidence 87655421 124678999996
No 143
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=36.23 E-value=18 Score=34.00 Aligned_cols=13 Identities=46% Similarity=0.905 Sum_probs=10.8
Q ss_pred CeEEEEcCchhHH
Q 005250 388 FRVLVCGGDGTVA 400 (706)
Q Consensus 388 ~~Ilv~GGDGTV~ 400 (706)
.|||+||||||-.
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 5999999999954
No 144
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.11 E-value=35 Score=36.88 Aligned_cols=99 Identities=25% Similarity=0.477 Sum_probs=52.3
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcccccc--cccc---cccc------eee-eeecC
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQA--CFSH---VKHH------WSE-RWVNM 148 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~--~~~~---~~H~------W~~-~~~~~ 148 (706)
-|+|| .|..-+.+ -||.|..|+..| |.- +..|+..... ...+ ..|| |.| .|
T Consensus 262 ~ps~C-~CH~~~~~--------~Gy~CP~Ckakv---CsL--P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~--- 324 (378)
T KOG2807|consen 262 TPSFC-ACHSELSG--------GGYFCPQCKAKV---CSL--PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPE--- 324 (378)
T ss_pred Ccchh-eecccccc--------CceeCCcccCee---ecC--CccCCccceeEecchHHHHHHHhhcCCcchhhccc---
Confidence 46776 46644432 249999999765 543 3345543221 1111 1222 333 12
Q ss_pred CCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCCC
Q 005250 149 DDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDL 203 (706)
Q Consensus 149 ~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 203 (706)
+.+....+|..|.... .++..|+|.-||..+=.+|--+ .+++-..|+-
T Consensus 325 -~~~~~~~~Cf~C~~~~-----~~~~~y~C~~Ck~~FCldCDv~-iHesLh~Cpg 372 (378)
T KOG2807|consen 325 -TEYNGSRFCFACQGEL-----LSSGRYRCESCKNVFCLDCDVF-IHESLHNCPG 372 (378)
T ss_pred -cccCCCcceeeecccc-----CCCCcEEchhccceeeccchHH-HHhhhhcCCC
Confidence 1234456899992221 2235689999998887888433 3344444643
No 145
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.84 E-value=26 Score=35.54 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=30.8
Q ss_pred CCcccccccc--ccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 81 QPSTCCVCLT--SLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 81 ~P~~C~vC~~--~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
+.-.|-+|.+ .|.+.+- ....+|..|+.+.|+.|... ..|+
T Consensus 151 kGfiCe~C~~~~~IfPF~~----~~~~~C~~C~~v~H~~C~~~--~~Cp 193 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI----DTTVRCPKCKSVFHKSCFRK--KSCP 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CCeeeCCcCccccchhhcCC--CCCC
Confidence 5667888984 5655432 34589999999999999986 5565
No 146
>PRK15138 aldehyde reductase; Provisional
Probab=35.58 E-value=1.5e+02 Score=33.09 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=49.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE--EE-EeccC---ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH-
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV--FE-LSASQ---GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE- 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV--~d-l~~t~---~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~- 407 (706)
++++||.-+.+=.. ..+..++...|....+ |+ +.... .-+++.+++++.+.+.||++|| |++-.+.-.+.
T Consensus 30 ~~~livt~~~~~~~--~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ia~ 106 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKFIAA 106 (387)
T ss_pred CeEEEECCCchHHh--cCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHH
Confidence 56666654433211 1244556666654433 43 22111 1235667777777889999998 44433333321
Q ss_pred --hc---------------CCCCCCCEEEeeC--CCcchhhhhc
Q 005250 408 --KR---------------NFESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 408 --~~---------------~~~~~ppvgILPl--GTGNDlAR~L 432 (706)
.. ...+.+|+..+|. |||-.....-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 107 AANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred HHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 00 0112468888887 7876554433
No 147
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=35.28 E-value=18 Score=40.15 Aligned_cols=33 Identities=36% Similarity=0.661 Sum_probs=24.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCC
Q 005250 388 FRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 388 ~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGT 424 (706)
+-|+..||||||=-+.+-+.+ .-|||--.-+||
T Consensus 170 D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs 202 (409)
T KOG2178|consen 170 DLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS 202 (409)
T ss_pred eEEEEecCCccEEEehhhhcC----CCCCeEEeecCC
Confidence 569999999999887664433 358887667774
No 148
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=34.57 E-value=28 Score=39.28 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.7
Q ss_pred eeccccCcccCCCchhhhcccCcc
Q 005250 105 HRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 105 ~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
..|++|+-.+|..|.-+-..-+.+
T Consensus 147 i~Cd~CgH~cH~dCALr~~~i~~G 170 (446)
T PF07227_consen 147 IGCDVCGHWCHLDCALRHELIGTG 170 (446)
T ss_pred EeccCCCceehhhhhcccccccCC
Confidence 589999999999998775544443
No 149
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=34.32 E-value=1.1e+02 Score=32.28 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=38.2
Q ss_pred CChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcc
Q 005250 373 QGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGN 426 (706)
Q Consensus 373 ~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGN 426 (706)
..+..|++.+.+....|||-.||..|+.+-+..|.++.....-.+ |+|.|--|
T Consensus 128 ~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~-Im~GgGV~ 180 (248)
T PRK11572 128 ANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPI-IMAGAGVR 180 (248)
T ss_pred CCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCE-EEeCCCCC
Confidence 468888998888888899999999998887777765421112234 88876443
No 150
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=33.94 E-value=73 Score=33.48 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=45.8
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cEEEEe---ccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QVFELS---ASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV~dl~---~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++|+.-+..-. ..-++++..|... ++..+. .....+...++...+ +.+.||.+|| ||++.+.--.
T Consensus 20 ~~~lvv~d~~t~~----~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~D~~K~~ 94 (250)
T PF13685_consen 20 KKVLVVTDENTYK----AAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTIIDIAKYA 94 (250)
T ss_dssp SEEEEEEETTHHH----HHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHHHHHHHH
T ss_pred CcEEEEEcCCHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHHHHHHHH
Confidence 5777887654333 3444555556543 332221 111223334445444 3356777777 9999998776
Q ss_pred HhcCCCCCCCEEEeeCCCcch
Q 005250 407 EKRNFESPPPVAVLPLGTGND 427 (706)
Q Consensus 407 ~~~~~~~~ppvgILPlGTGND 427 (706)
... ...|+..+|.=-.||
T Consensus 95 A~~---~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 95 AFE---LGIPFISVPTAASHD 112 (250)
T ss_dssp HHH---HT--EEEEES--SSG
T ss_pred HHh---cCCCEEEeccccccc
Confidence 542 357999999988888
No 151
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=33.31 E-value=85 Score=34.28 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=37.7
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
.+.+.+.+++..-+.++++|||||+.-+ +.|.+. ..+|--+|.=--||+.
T Consensus 83 ~~~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~~----gi~vigiPkTIDNDl~ 132 (324)
T TIGR02483 83 DDKIVANLKELGLDALIAIGGDGTLGIA-RRLADK----GLPVVGVPKTIDNDLE 132 (324)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHH-HHHHhc----CCCEEeeccccCCCCc
Confidence 3456666666677889999999999755 456552 3788889988899996
No 152
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=32.53 E-value=1.4e+02 Score=32.94 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=51.4
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E-EEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V-FELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V-~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++++||.-+..- ..+.+++...|...+ + |+....+.+ +.+.+.+++...+.||+.|| |++..+.-.+.
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 104 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVA 104 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHH
Confidence 577777654432 235666777775432 2 432221111 23455566666788999998 78888777664
Q ss_pred hcCCCCCCCEEEeeC--CCcchhh
Q 005250 408 KRNFESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 408 ~~~~~~~ppvgILPl--GTGNDlA 429 (706)
-. ..+|+..+|. |||--..
T Consensus 105 ~~---~~~p~i~IPTtagtgSe~t 125 (366)
T PRK09423 105 DY---LGVPVVIVPTIASTDAPTS 125 (366)
T ss_pred HH---cCCCEEEeCCccccCcccc
Confidence 32 3578999997 4444333
No 153
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=32.48 E-value=1.5e+02 Score=33.12 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=50.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++||..+.... ..++.++...|.... +|+-.....| .++.+++++...+.||++|| |++-.+.-.+
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 98 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIA 98 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 5777887654433 134555656665432 2331111112 23445566656788898988 6776666554
Q ss_pred HhcC---------------CCCCCCEEEeeC--CCcchhhhh
Q 005250 407 EKRN---------------FESPPPVAVLPL--GTGNDMSRV 431 (706)
Q Consensus 407 ~~~~---------------~~~~ppvgILPl--GTGNDlAR~ 431 (706)
.-.- ..+.+|+..+|. |||-...+.
T Consensus 99 a~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 99 GLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred HHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 3110 012468888886 666655554
No 154
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.33 E-value=93 Score=33.64 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=37.3
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
+.+.+.+++..-+.++++|||||+.-+.. |.+. ...+|--+|-=--||+.-
T Consensus 81 ~~~~~~l~~~~Id~Li~IGGdgs~~~a~~-L~e~---~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 81 QKAVENLKKLGIEGLVVIGGDGSYTGAQK-LYEE---GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHh---hCCCEEeecccccCCCcC
Confidence 34555566666788999999999977643 4331 246888899999999873
No 155
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=31.87 E-value=24 Score=35.85 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=36.9
Q ss_pred cCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCC
Q 005250 372 SQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 372 t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGT 424 (706)
+..+..|++.+.+....+||-.||..++.+-++.|.++-......|-|+|.|-
T Consensus 126 ~~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgG 178 (201)
T PF03932_consen 126 VPDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGG 178 (201)
T ss_dssp SSTHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS
T ss_pred hCCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 35577888888777888999999999887666666443111234678888873
No 156
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=31.39 E-value=37 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=20.3
Q ss_pred cccccccccccccccCCCCCceeccccCccc
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAA 114 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~v 114 (706)
||..|.++|..... .....+.|..|++..
T Consensus 2 FCp~Cg~~l~~~~~--~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEG--KEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccC--CCCCEEECCcCCCeE
Confidence 89999998864322 112468999999753
No 157
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=31.32 E-value=1.5e+02 Score=32.33 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=48.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--EEEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--VFELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++|+..+.. ...+.+++...|.... +|+-.....+ +.+.+.+++...+.||++|| |++..+.-.+.-
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia~ 98 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIAL 98 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 56777754322 2225666777776543 3432211111 23445555556678888887 888888877643
Q ss_pred cCCCCCCCEEEeeC-CCcc
Q 005250 409 RNFESPPPVAVLPL-GTGN 426 (706)
Q Consensus 409 ~~~~~~ppvgILPl-GTGN 426 (706)
. ..+|+..+|. -||-
T Consensus 99 ~---~~~p~i~IPTtatgs 114 (337)
T cd08177 99 R---TGLPIIAIPTTLSGS 114 (337)
T ss_pred H---hcCCEEEEcCCchhh
Confidence 2 2468888885 2443
No 158
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=30.88 E-value=20 Score=34.13 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=15.9
Q ss_pred CCccccccccccccccccCCCCCceeccccCcc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
..+||+||+ .++. |.|..||-.
T Consensus 117 ~r~fCaVCG--~~S~---------ysC~~CG~k 138 (156)
T KOG3362|consen 117 LRKFCAVCG--YDSK---------YSCVNCGTK 138 (156)
T ss_pred cchhhhhcC--CCch---------hHHHhcCCc
Confidence 458999998 4332 789999853
No 159
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=30.37 E-value=1e+02 Score=33.59 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=38.4
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
..+.+.+++..-+.++++|||||+.-+. .|.+. ..+|--+|-=--||+.-
T Consensus 82 ~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~----~i~vigiPkTIDNDi~g 131 (317)
T cd00763 82 AKAIEQLKKHGIDALVVIGGDGSYMGAM-RLTEH----GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HHHHHHHHHcCCCEEEEECCchHHHHHH-HHHHc----CCCEEEecccccCCCCC
Confidence 4455666666778899999999998774 45543 47899999999999873
No 160
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=30.07 E-value=1.5e+02 Score=32.36 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=45.9
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCC--h---hHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQG--P---EVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~--p---~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
++++||..+..-..-+ +++...|+..+ +++-..... . +++.+.+++ ..+.||+.|| |++..+.-.
T Consensus 25 ~kvlivtd~~~~~~~~----~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~aK~ 98 (332)
T cd08549 25 SKIMIVCGNNTYKVAG----KEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLVKF 98 (332)
T ss_pred CcEEEEECCcHHHHHH----HHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHHHH
Confidence 5788888765543322 44555554332 222111111 1 234445555 5677888888 888888776
Q ss_pred HHhcCCCCCCCEEEeeCC
Q 005250 406 IEKRNFESPPPVAVLPLG 423 (706)
Q Consensus 406 L~~~~~~~~ppvgILPlG 423 (706)
+.- ...+|+..+|.=
T Consensus 99 iA~---~~gip~I~VPTT 113 (332)
T cd08549 99 VSF---KVGKPFISVPTA 113 (332)
T ss_pred HHH---HcCCCEEEeCCC
Confidence 642 245789999964
No 161
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=29.08 E-value=1.1e+02 Score=33.66 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--CCCCCCCEEEeeCCCcchhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--NFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--~~~~~ppvgILPlGTGNDlA 429 (706)
..+.+.+++..-+.++++|||||+.-+.. |.+. +.....+|--+|-=--||+.
T Consensus 82 ~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~-L~e~~~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 82 AKAAENLKKHGIDALVVIGGDGSYTGADL-LTEEWPSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHhCCCEEEEeCCHHHHHHHHH-HHHHHHhcCCCccEEEeeecccCCCc
Confidence 44566666666788999999999976643 3221 11135788889966689987
No 162
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=29.03 E-value=2.4e+02 Score=29.35 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=50.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCC-CcE--EEEeccCChhHHHHHHHhC--C---CCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNP-AQV--FELSASQGPEVGLELFSNF--Q---YFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp-~qV--~dl~~t~~p~~al~l~~~~--~---~~~Ilv~GGDGTV~~VLn~L 406 (706)
+|++.|+|+|.|.|+...++-....+.+. ..| ||- +.-.+..+|.++. + ..++.|.++| ++. .+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDa---Dpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~~ 75 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDA---DPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILEDA 75 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeC---CCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHHH
Confidence 48999999999999876655444444433 334 443 3334455675554 1 2345555554 333 33333
Q ss_pred HhcCCCCCCCEEEeeC-CCcchhhhh
Q 005250 407 EKRNFESPPPVAVLPL-GTGNDMSRV 431 (706)
Q Consensus 407 ~~~~~~~~ppvgILPl-GTGNDlAR~ 431 (706)
++....+...+.++=+ |++|-++..
T Consensus 76 ~e~a~~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCchhHHH
Confidence 3221112346677776 888776543
No 163
>PLN02564 6-phosphofructokinase
Probab=28.77 E-value=1e+02 Score=35.59 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=37.1
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHH---HHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLN---AIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn---~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
...+.+.+++..-+.++++|||||+.-+.. .+.+.+ .+.+|.-||-==-||+.
T Consensus 165 ~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g--~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 165 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRG--LKVAVAGIPKTIDNDIP 220 (484)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcC--CCceEEEecccccCCCc
Confidence 445556666666778999999999977643 222232 24568888988899987
No 164
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=28.59 E-value=30 Score=43.33 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhh-cccC---CCCCCCCCCCCC
Q 005250 152 AELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI-MSKE---SGDVCDLGPHRR 208 (706)
Q Consensus 152 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~-~~~~---~~~~CdlG~~~~ 208 (706)
+..+++|.+|.+.|..-.- ..+.|-.|...||-+|... ..++ +...|-+.+.+.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n---~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSN---VIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred cCCCccceeecccccCCCc---eEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc
Confidence 4567899999999765211 3589999999999999872 1111 113466666665
No 165
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=28.39 E-value=31 Score=30.48 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
+.|.+|.+.|..... ... -|+-++|..|..+
T Consensus 79 ~~C~vC~k~l~~~~f-------~~~-p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVF-------VVF-PCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCceE-------EEe-CCCeEEecccccC
Confidence 569999998853221 222 3568999999863
No 166
>PRK14071 6-phosphofructokinase; Provisional
Probab=28.11 E-value=1.1e+02 Score=33.99 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=38.2
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
.+.+.+.+++..-+.++++|||||+.-+ ..|.+. ...++--+|-=--||+.-
T Consensus 96 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~~~---~~i~vIgiPkTIDNDl~~ 147 (360)
T PRK14071 96 SQEIIDGYHSLGLDALIGIGGDGSLAIL-RRLAQQ---GGINLVGIPKTIDNDVGA 147 (360)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHHHH-HHHHHh---cCCcEEEecccccCCCcC
Confidence 3456666776677889999999998643 455542 257888899888999863
No 167
>PRK14072 6-phosphofructokinase; Provisional
Probab=27.33 E-value=1e+02 Score=34.92 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=38.5
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--CCCCCCCEEEeeCCCcchhhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--NFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--~~~~~ppvgILPlGTGNDlAR 430 (706)
...+++.+++..-+.++++|||||+.-+.. |.+. ......+|--+|-==-||+.-
T Consensus 92 ~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~~~g~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 92 YERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAKKMGYPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred HHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHHHhCCCceEEEeeecccCCCCC
Confidence 445666667667788999999999977643 3321 012347888899877999983
No 168
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=27.22 E-value=43 Score=23.55 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=19.7
Q ss_pred cccccccccccccccCCCCCceeccccCccc
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAA 114 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~v 114 (706)
.|..|+..|+-..| -...+|..|..+.
T Consensus 3 ~C~~C~t~L~yP~g----A~~vrCs~C~~vt 29 (31)
T TIGR01053 3 VCGGCRTLLMYPRG----ASSVRCALCQTVN 29 (31)
T ss_pred CcCCCCcEeecCCC----CCeEECCCCCeEe
Confidence 58999998864333 4558999998654
No 169
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=26.70 E-value=1.7e+02 Score=31.93 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=45.4
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEecc---CChh---HHHHHHHhCCCCeEEEEcCchhHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSAS---QGPE---VGLELFSNFQYFRVLVCGGDGTVAWVLN 404 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~t---~~p~---~al~l~~~~~~~~Ilv~GGDGTV~~VLn 404 (706)
++++||.-+.+-. ....++...|... .+|+.... ...+ .+.+.+++ ..+.||+.|| |++..+.-
T Consensus 24 ~~~livtd~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~aK 97 (348)
T cd08175 24 KKALIVADENTYA----AAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDITK 97 (348)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHHH
Confidence 5677776543322 2234555555433 23443221 1112 23444444 5678888988 78888877
Q ss_pred HHHhcCCCCCCCEEEeeCCC
Q 005250 405 AIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 405 ~L~~~~~~~~ppvgILPlGT 424 (706)
.+.-. ..+|+..+|.=.
T Consensus 98 ~vA~~---~~~p~i~IPTTa 114 (348)
T cd08175 98 YVSYK---TGIPYISVPTAP 114 (348)
T ss_pred HHHHh---cCCCEEEecCcc
Confidence 76532 357899999743
No 170
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=26.04 E-value=45 Score=30.11 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=19.3
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhh
Q 005250 18 YGYGPFFFGSFGLLAILYASFKWQRRT 44 (706)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~r~~ 44 (706)
.|+-|++.++|++++..+....+|+|.
T Consensus 21 ~w~FWlv~~liill~c~c~~~~~r~r~ 47 (102)
T PF11669_consen 21 LWYFWLVWVLIILLSCCCACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688878888888887776666654
No 171
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=25.82 E-value=2.2e+02 Score=31.25 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=57.7
Q ss_pred CCCCCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccC-Ch-----hHHHHHHHhCCCCeEEEEcC----chhH
Q 005250 330 VPQDARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQ-GP-----EVGLELFSNFQYFRVLVCGG----DGTV 399 (706)
Q Consensus 330 ~p~~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~-~p-----~~al~l~~~~~~~~Ilv~GG----DGTV 399 (706)
+|.+ +++||++---|=...| +..+....|...+++++.-.+ .| ..|.+++|+-.-+-||++|| |||=
T Consensus 26 i~~~-~kVLi~YGGGSIKrnG--vydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~tK 102 (384)
T COG1979 26 IPKD-AKVLIVYGGGSIKKNG--VYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGTK 102 (384)
T ss_pred cccc-CeEEEEecCccccccc--hHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecCcchhhhHH
Confidence 5555 8899998644433332 677888888888999986422 22 34777888877778898888 5554
Q ss_pred HHHHHHHHhcC-----CCCCCCEEEeeCCCcchhh
Q 005250 400 AWVLNAIEKRN-----FESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 400 ~~VLn~L~~~~-----~~~~ppvgILPlGTGNDlA 429 (706)
--.+-+.+..+ ....+.=-.||+||-=.|+
T Consensus 103 ~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~VLTLp 137 (384)
T COG1979 103 FIAAAAKYDGDPWDILTKKHKIKDALPIGTVLTLP 137 (384)
T ss_pred HHHhhcccCCChHHHHhcCCccccccccceEEEcc
Confidence 43333332211 0112233456777654443
No 172
>PLN02834 3-dehydroquinate synthase
Probab=25.72 E-value=2e+02 Score=32.85 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=45.4
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC----cEEEEecc-----CChhH---HHHHHHhCCC---CeEEEEcCchhH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA----QVFELSAS-----QGPEV---GLELFSNFQY---FRVLVCGGDGTV 399 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~----qV~dl~~t-----~~p~~---al~l~~~~~~---~~Ilv~GGDGTV 399 (706)
++++||.++.... .+.+.+...|... .+++.... ...+. +.+.+++.+. +.||++|| |++
T Consensus 101 ~rvlIVtD~~v~~----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv 175 (433)
T PLN02834 101 KRVLVVTNETVAP----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVI 175 (433)
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHH
Confidence 6788888765432 2556666666543 33332211 11222 2333444332 35677766 888
Q ss_pred HHHHHHHHhcCCCCCCCEEEeeCC
Q 005250 400 AWVLNAIEKRNFESPPPVAVLPLG 423 (706)
Q Consensus 400 ~~VLn~L~~~~~~~~ppvgILPlG 423 (706)
..+.-.+... +.+.+|+..+|.-
T Consensus 176 ~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 176 GDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHH-hcCCCCEEEECCc
Confidence 8887654321 1246899999993
No 173
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=24.92 E-value=3e+02 Score=28.28 Aligned_cols=79 Identities=10% Similarity=-0.066 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhCCCC--eEEEEcCchhHHHHHHHHHhcCCC-CCCCEEEeeCCCc
Q 005250 350 GHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNFQYF--RVLVCGGDGTVAWVLNAIEKRNFE-SPPPVAVLPLGTG 425 (706)
Q Consensus 350 g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~~~~--~Ilv~GGDGTV~~VLn~L~~~~~~-~~ppvgILPlGTG 425 (706)
|.++.+.++..+....| .|+-..+-|..-.+.+.+...+ .++.+||+.|+..+.++..+..-. ..--+||+..-..
T Consensus 43 G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~ 122 (218)
T PRK13305 43 GLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDA 122 (218)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchH
Confidence 45678888887766667 5776556664444445555443 678889999999999976542211 1124677433322
Q ss_pred chh
Q 005250 426 NDM 428 (706)
Q Consensus 426 NDl 428 (706)
.+|
T Consensus 123 ~~l 125 (218)
T PRK13305 123 RDW 125 (218)
T ss_pred HHH
Confidence 444
No 174
>PRK03202 6-phosphofructokinase; Provisional
Probab=24.86 E-value=1.3e+02 Score=32.74 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=37.5
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
..+++.+++..-+.++++|||||+.-+. .|.+. ..+|--+|-=--||+.-
T Consensus 83 ~~~~~~l~~~~Id~Li~IGGd~s~~~a~-~L~e~----~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 83 AKAIENLKKLGIDALVVIGGDGSYMGAK-RLTEH----GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHHH-HHHhc----CCcEEEecccccCCCCC
Confidence 4455556666668899999999998764 35542 57888899888999873
No 175
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=24.57 E-value=54 Score=21.99 Aligned_cols=25 Identities=40% Similarity=0.828 Sum_probs=16.4
Q ss_pred ccccccccccccccCCCCCceeccccCcc
Q 005250 85 CCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 85 C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
|.-|+..|.-..| -+-.+|..|..+
T Consensus 1 C~~Cr~~L~yp~G----A~sVrCa~C~~V 25 (25)
T PF06943_consen 1 CGGCRTLLMYPRG----APSVRCACCHTV 25 (25)
T ss_pred CCCCCceEEcCCC----CCCeECCccCcC
Confidence 6778877753333 344799999753
No 176
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.54 E-value=5.9e+02 Score=23.87 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=67.0
Q ss_pred CcEEEEEcCCcCCCC-hHHHHHHHHHhhCC--CcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc-C
Q 005250 335 RPLLVFINAKSGGQL-GHYLRRRLNMLLNP--AQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR-N 410 (706)
Q Consensus 335 ~pllV~vNPkSG~~~-g~~l~~~~~~lLnp--~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~-~ 410 (706)
+|-+++.|+..-..+ |..+ +..+|.. ..|+++-.-..|++..+.+.+.+.+.|.+|+=|||--+.+..+.+. +
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~i---v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~ 78 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKV---IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELD 78 (132)
T ss_pred CCEEEEEeeCCCccHHHHHH---HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHH
Confidence 455677888664332 2333 3344443 5577776555688888888887788899999998655555544331 1
Q ss_pred CCCCCCEEEeeCC-Ccc-hhhh--hcccCCCcccCCCCCcHHHHHHHHHHhhheee
Q 005250 411 FESPPPVAVLPLG-TGN-DMSR--VLQWGRGFSMVDGHGGLSTILNDIEHAAVTML 462 (706)
Q Consensus 411 ~~~~ppvgILPlG-TGN-DlAR--~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~l 462 (706)
......+-|+=.| -.+ |++. .+|+.+-| .+..++.+++..+.+.....|
T Consensus 79 ~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~---~~gt~~~~i~~~l~~~~~~~~ 131 (132)
T TIGR00640 79 KLGRPDILVVVGGVIPPQDFDELKEMGVAEIF---GPGTPIPESAIFLLKKLRKLL 131 (132)
T ss_pred hcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE---CCCCCHHHHHHHHHHHHHHhc
Confidence 1011123333343 233 3333 34443222 223577888877766443333
No 177
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=24.42 E-value=3.1e+02 Score=30.56 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EE----EEe---ccCCh-h---HHHHHHHhCCC---CeEEEEcC
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VF----ELS---ASQGP-E---VGLELFSNFQY---FRVLVCGG 395 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~----dl~---~t~~p-~---~al~l~~~~~~---~~Ilv~GG 395 (706)
.++++||.++.-.. ....+...+...|+... +| .+. .++.. + .+.+.+.+... +.||+.||
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 36788888865443 11134566666665332 22 111 11221 2 23344444433 36777877
Q ss_pred chhHHHHHHHHHhcCCCCCCCEEEeeCC
Q 005250 396 DGTVAWVLNAIEKRNFESPPPVAVLPLG 423 (706)
Q Consensus 396 DGTV~~VLn~L~~~~~~~~ppvgILPlG 423 (706)
|++..+.-.+... +.+.+|+-.+|.=
T Consensus 109 -G~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 109 -GAVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred -hHHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 8998888766543 3356889999964
No 178
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=24.28 E-value=1e+02 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=31.0
Q ss_pred EEEEEeC-CCccEEecCCCCCCceEEEE-EEcCceEEEEeCCC
Q 005250 625 VIRIHSS-SPFPVQIDGEPFIQQAGCLD-ITHHGQVFTLRRAP 665 (706)
Q Consensus 625 ~i~I~~~-~~~pvqvDGE~~~~~P~~I~-I~~~~~~~ml~~~~ 665 (706)
.+.|++. ....+-+||+..+..|+++. +.++...+.+.++.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp~~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTPLTLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCcceeeecCCccEEEEEEECC
Confidence 4566654 46789999999999999888 66777777776654
No 179
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=24.12 E-value=40 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=21.1
Q ss_pred ccccccc-ccccccccCCCCCceecccc-CcccCCCchh
Q 005250 84 TCCVCLT-SLVLPQSVGAHFPVHRCAVC-GVAAHFFCSE 120 (706)
Q Consensus 84 ~C~vC~~-~i~g~~~lG~~~~~~~C~~C-~~~vH~~C~~ 120 (706)
.|+.|.+ .|.| .+++|..| .+-.+..|..
T Consensus 2 ~Cd~C~~~~i~G--------~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIG--------IRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCccc--------CeEECCCCCCccchHHHhC
Confidence 5999995 4533 34899999 6777777765
No 180
>PRK06756 flavodoxin; Provisional
Probab=23.89 E-value=2.6e+02 Score=26.22 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=19.6
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ 365 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q 365 (706)
..++||+=+.+| ..+++.+.+...|...+
T Consensus 2 mkv~IiY~S~tG--nTe~vA~~ia~~l~~~g 30 (148)
T PRK06756 2 SKLVMIFASMSG--NTEEMADHIAGVIRETE 30 (148)
T ss_pred ceEEEEEECCCc--hHHHHHHHHHHHHhhcC
Confidence 478888865444 45678888877776543
No 181
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.75 E-value=1.4e+02 Score=33.51 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=34.8
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh---c-----------C-CCCCCCEEEeeC--CCcchhhhhcc
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK---R-----------N-FESPPPVAVLPL--GTGNDMSRVLQ 433 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~---~-----------~-~~~~ppvgILPl--GTGNDlAR~Lg 433 (706)
.++.+++++...+.||++|| |++-.+.-++.- . . ..+.+|+..+|. |||-...+.--
T Consensus 96 ~~~~~~~r~~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~av 169 (395)
T PRK15454 96 CAAVAQLRESGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTV 169 (395)
T ss_pred HHHHHHHHhcCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEE
Confidence 35677788888899999999 444444333211 0 0 013468888887 77766555443
No 182
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.57 E-value=51 Score=26.43 Aligned_cols=29 Identities=38% Similarity=0.782 Sum_probs=20.7
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
+|.||..-..+ ..-+.|..||+..| |+.-
T Consensus 1 ~Cpv~~~~~~~-------~v~~~Cp~cGipth--cS~e 29 (55)
T PF13824_consen 1 LCPVCKKDLPA-------HVNFECPDCGIPTH--CSEE 29 (55)
T ss_pred CCCCCcccccc-------ccCCcCCCCCCcCc--cCHH
Confidence 58888875432 23389999999998 6654
No 183
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=23.36 E-value=24 Score=35.84 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=24.9
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
..|+.|++.+. || .+|..|++-.|-+|.+.
T Consensus 182 k~Cn~Ch~LvI--qg-------~rCg~c~i~~h~~c~qt 211 (235)
T KOG4718|consen 182 KNCNLCHCLVI--QG-------IRCGSCNIQYHRGCIQT 211 (235)
T ss_pred HHHhHhHHHhh--ee-------eccCcccchhhhHHHHH
Confidence 45999998763 44 69999999999999875
No 184
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.31 E-value=48 Score=21.60 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=15.3
Q ss_pred cccccccccccccccCCCCCceeccccCcc
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
||..|...|.... ..|..||..
T Consensus 1 ~Cp~CG~~~~~~~--------~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDA--------KFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcC--------cchhhhCCc
Confidence 6888888875321 478888853
No 185
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.14 E-value=3.1e+02 Score=27.80 Aligned_cols=60 Identities=10% Similarity=-0.020 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWV 402 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~V 402 (706)
|+++++|=|- .+-...+.+.|+.+ + .. .++...+.+ . +-+.+...+.|++.||-|.+.+.
T Consensus 1 ~~~il~iD~~---dsf~~nl~~~l~~~-g-~~-~~v~~~~~~--~-~~l~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 1 MTHVVLIDNH---DSFVYNLVDAFAVA-G-YK-CTVFRNTVP--V-EEILAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CCEEEEEECC---cCHHHHHHHHHHHC-C-Cc-EEEEeCCCC--H-HHHHhcCCCEEEEeCCCCCHHHh
Confidence 4567776663 22222355555543 2 22 233322222 1 22223355789999999999776
No 186
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=23.05 E-value=1.8e+02 Score=27.18 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=37.4
Q ss_pred cEEecCCCCCCceEEEEEEcCceEEEEeCCCCCCCchhhHHHHHHHHHhHhcCCCCHHHHHHHHHHHHHh
Q 005250 635 PVQIDGEPFIQQAGCLDITHHGQVFTLRRAPEEPRGHATAIMTEVLLDAECKGIINASQRKVLLQQIALQ 704 (706)
Q Consensus 635 pvqvDGE~~~~~P~~I~I~~~~~~~ml~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 704 (706)
..-.||+......+-+.-.|...- -.|...+---+..+|+.|...|+|++.+++.|++ +|..
T Consensus 52 ~~Yr~G~i~~DDEVAv~~~p~~~g-------~~~ls~plVniR~tl~~a~~~g~i~~~~~~~l~~-~ak~ 113 (120)
T PF07812_consen 52 EWYRDGEIEDDDEVAVLHGPAELG-------YRPLSEPLVNIRATLRAAVRAGIISEEEAAALLA-AAKS 113 (120)
T ss_pred HHHhcCCcCCccceeeeecCcccC-------CccccHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHh
Confidence 345566665554433333222211 0344433334569999999999999999999875 4443
No 187
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=22.84 E-value=1.4e+02 Score=33.73 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=37.1
Q ss_pred hHHHHHHHhCCCCeEEEEcCchhHHHHHHH---HHhcCCCCCCCEEEeeCCCcchhh
Q 005250 376 EVGLELFSNFQYFRVLVCGGDGTVAWVLNA---IEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 376 ~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~---L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
..+++.+++..-+.++++|||||..-+..- +.+.+ -..+|--||-==-||+.
T Consensus 102 ~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g--~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 102 KVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENG--YDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhC--CCceEEEeeeeeeCCCC
Confidence 445666666667789999999998766432 22222 25789999998899985
No 188
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=1.5e+02 Score=32.66 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=20.1
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.|.+|.|.-...-. ++=-=|+=..|..|++.
T Consensus 230 ~~CaIClEdY~~Gdk-------lRiLPC~H~FH~~CIDp 261 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDK-------LRILPCSHKFHVNCIDP 261 (348)
T ss_pred ceEEEeecccccCCe-------eeEecCCCchhhccchh
Confidence 389999985432122 33456777777777663
No 189
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.51 E-value=2.3e+02 Score=31.20 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=51.9
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhh--CCCc--EEEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHH-
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLL--NPAQ--VFELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAI- 406 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lL--np~q--V~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L- 406 (706)
+.+||..+ +-... .+.+++...| +..+ +|+-..... -..+.+++++...+.||++|| |++-.+.-.+
T Consensus 23 r~lvVt~~-~~~~~--~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHH--THHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEECc-hHHhC--ccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHHHHHH
Confidence 78888877 43322 2667777777 3333 455222122 234667777778889999999 4444444433
Q ss_pred --HhcC-------------CCCCCCEEEeeC--CCcchhhhhc
Q 005250 407 --EKRN-------------FESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 407 --~~~~-------------~~~~ppvgILPl--GTGNDlAR~L 432 (706)
.... ..+.+|+..+|. |||-.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~a 141 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYA 141 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEE
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccc
Confidence 2211 012368999997 5554554433
No 190
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.48 E-value=51 Score=22.98 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=14.6
Q ss_pred ccccccccccccccccCCCCCceeccccCcc
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
.||..|...+....+ +-..+|..|+..
T Consensus 4 rfC~~CG~~t~~~~~----g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPG----GWARRCPSCGHE 30 (32)
T ss_dssp SB-TTT--BEEE-SS----SS-EEESSSS-E
T ss_pred cccCcCCccccCCCC----cCEeECCCCcCE
Confidence 599999986643222 344899999853
No 191
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=22.17 E-value=65 Score=38.50 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.6
Q ss_pred CCCCCcccccCCC-cCcCccCCCCceeecccccccchhhhhhcccCC----CCCCCCC
Q 005250 152 AELSAFCFYCDEP-CGVPFINDCPTWHCLWCQRRIHVKCHAIMSKES----GDVCDLG 204 (706)
Q Consensus 152 ~~~~~~C~~C~k~-c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~----~~~CdlG 204 (706)
++....|++|..+ |... -+-+-|--|+..||..|...+.-.. ...|.||
T Consensus 268 ~dedviCDvCrspD~e~~----neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEA----NEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccccceeceecCCCcccc----ceeEEeccchhHHHHhhhceeecCCCCeeehhcccc
Confidence 4567899999776 3211 1346899999999999986543211 2359999
No 192
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=22.14 E-value=2.1e+02 Score=31.55 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cE--EEEec---cCChhH---HHHHHHhCCC----CeEEEEcCchhH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QV--FELSA---SQGPEV---GLELFSNFQY----FRVLVCGGDGTV 399 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV--~dl~~---t~~p~~---al~l~~~~~~----~~Ilv~GGDGTV 399 (706)
.++++||..+..-. ...+.+...|+.. .+ +-+.. ....+. +.+.+++... +.||++|| |++
T Consensus 26 ~~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~v 100 (354)
T cd08199 26 SGRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GVL 100 (354)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cHH
Confidence 36788888664432 2334555555432 22 11211 112222 3334444332 56776766 888
Q ss_pred HHHHHHHHhcCCCCCCCEEEeeC
Q 005250 400 AWVLNAIEKRNFESPPPVAVLPL 422 (706)
Q Consensus 400 ~~VLn~L~~~~~~~~ppvgILPl 422 (706)
..+.-.+... +...+|+..+|.
T Consensus 101 ~D~ak~~A~~-~~rg~p~i~VPT 122 (354)
T cd08199 101 TDVAGLAASL-YRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHH-hcCCCCEEEEcC
Confidence 8887766532 124678999998
No 193
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.12 E-value=3.9e+02 Score=29.92 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=49.1
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEe-------ccCCh-h---HHHHHHHhCCC---CeEEEEcCc
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELS-------ASQGP-E---VGLELFSNFQY---FRVLVCGGD 396 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~-------~t~~p-~---~al~l~~~~~~---~~Ilv~GGD 396 (706)
++++||..+.--.-. ..+...+...|+... +|+.. ..+.. + ...+.+++... +.||+.||
T Consensus 43 ~r~liVtD~~v~~~~-~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG- 120 (389)
T PRK06203 43 KKVLVVIDSGVLRAH-PDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG- 120 (389)
T ss_pred CeEEEEECchHHHhh-hhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC-
Confidence 577888765443311 135667777775432 23311 11221 2 23344444443 36777776
Q ss_pred hhHHHHHHHHHhcCCCCCCCEEEeeC--CCcchh
Q 005250 397 GTVAWVLNAIEKRNFESPPPVAVLPL--GTGNDM 428 (706)
Q Consensus 397 GTV~~VLn~L~~~~~~~~ppvgILPl--GTGNDl 428 (706)
|++..+.-.+... +.+.+|+..+|. |+.+|-
T Consensus 121 Gsv~D~ak~iA~~-~~rgip~I~IPTTlla~vda 153 (389)
T PRK06203 121 GAVLDMVGYAAAT-AHRGVRLIRIPTTVLAQNDS 153 (389)
T ss_pred cHHHHHHHHHHHH-hcCCCCEEEEcCCCccccCC
Confidence 8888887655432 224578999996 445553
No 194
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.06 E-value=34 Score=33.17 Aligned_cols=16 Identities=25% Similarity=0.791 Sum_probs=12.6
Q ss_pred CCCCCCCcccccCCCc
Q 005250 150 DNAELSAFCFYCDEPC 165 (706)
Q Consensus 150 ~n~~~~~~C~~C~k~c 165 (706)
+++..|++|..|+++.
T Consensus 63 ~~~~~PsYC~~CGkpy 78 (158)
T PF10083_consen 63 GHYEAPSYCHNCGKPY 78 (158)
T ss_pred CCCCCChhHHhCCCCC
Confidence 4677899999997754
No 195
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.93 E-value=70 Score=32.42 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=25.7
Q ss_pred CcccccCCC-cCcCccCCCCceeecccccccchhhhhh
Q 005250 156 AFCFYCDEP-CGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 156 ~~C~~C~k~-c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
-.|..|+.. .--+|... ...+|.-|+..+|..|...
T Consensus 153 fiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC
Confidence 378888865 11133221 5689999999999999875
No 196
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.72 E-value=82 Score=29.44 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=4.8
Q ss_pred hhhHHHHHHH
Q 005250 22 PFFFGSFGLL 31 (706)
Q Consensus 22 ~~~~~~~~~~ 31 (706)
|+++++|+++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 5555554433
No 197
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=21.27 E-value=47 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=18.5
Q ss_pred ccccccccccccccccCCCCCceeccccCccc
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAA 114 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~v 114 (706)
.||--|.++|....+-. ... .|..|+|..
T Consensus 2 ~FCp~C~nlL~p~~~~~--~~~-~C~~C~Y~~ 30 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDKE--KRV-ACRTCGYEE 30 (35)
T ss_dssp -BETTTTSBEEEEEETT--TTE-EESSSS-EE
T ss_pred eeCCCCCccceEcCCCc--cCc-CCCCCCCcc
Confidence 38999999987544321 222 699999763
No 198
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.22 E-value=48 Score=39.02 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCceeccccCcccCCCchhh
Q 005250 102 FPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 102 ~~~~~C~~C~~~vH~~C~~~ 121 (706)
+--.-|..|+...|..|+..
T Consensus 33 g~m~ac~~c~~~yH~~cvt~ 52 (694)
T KOG4443|consen 33 GRLLACSDCGQKYHPYCVTS 52 (694)
T ss_pred CcchhhhhhcccCCcchhhH
Confidence 33479999999999999984
No 199
>PF15569 Imm21: Immunity protein 21
Probab=21.17 E-value=74 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.7
Q ss_pred hCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCc
Q 005250 361 LNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGD 396 (706)
Q Consensus 361 Lnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGD 396 (706)
|++.++.+... ...+|++++.-.....|++.|||
T Consensus 2 L~~lGi~~~A~--~~~dal~ii~~~~~~~i~ILGGD 35 (91)
T PF15569_consen 2 LEELGINEYAY--PFQDALKIINICEEKNIPILGGD 35 (91)
T ss_pred chhcCceeeec--CHHHHHHHHHHHHhcCceEEcce
Confidence 45566666654 46778887776667789999998
No 200
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.11 E-value=2.8e+02 Score=33.97 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=35.1
Q ss_pred HHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--CC-CCCCCEEEeeCCCcchhh
Q 005250 379 LELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--NF-ESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 379 l~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--~~-~~~ppvgILPlGTGNDlA 429 (706)
.+.+++..-+.++++|||||..-+. .|.+. .+ ....|+-.||.=--||+.
T Consensus 471 ~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 471 AYNFQKYGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred HHHHHHcCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 3444444567899999999998765 34331 11 135889999999999986
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=20.92 E-value=62 Score=34.29 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=13.0
Q ss_pred CeEEEEcCc-hhHHHHHH
Q 005250 388 FRVLVCGGD-GTVAWVLN 404 (706)
Q Consensus 388 ~~Ilv~GGD-GTV~~VLn 404 (706)
..+|+.||| ||+.|||-
T Consensus 75 ~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFK 92 (262)
T ss_pred eEEEEcCCchHHHHHHHC
Confidence 456778899 78888875
No 202
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.85 E-value=5.9e+02 Score=27.97 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=48.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEE-EeccCC---hhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFE-LSASQG---PEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~d-l~~t~~---p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++++||..+.- . ..++...++..-....+|+ +..... -+.+.+++++. ..+.||++|| |++-.+.-++.
T Consensus 26 ~~~lvvtd~~~-~--~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~AKaia 101 (347)
T cd08184 26 DPAVFFVDDVF-Q--GKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLDVAKAVS 101 (347)
T ss_pred CeEEEEECcch-h--hhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHHHHHH
Confidence 56777663322 1 1445555544322233453 221111 23566777766 5688998988 55555444432
Q ss_pred ---hcC------------CCCCCCEEEeeC--CCcchhhhhc
Q 005250 408 ---KRN------------FESPPPVAVLPL--GTGNDMSRVL 432 (706)
Q Consensus 408 ---~~~------------~~~~ppvgILPl--GTGNDlAR~L 432 (706)
... ..+.+|+..+|. |||--..+.-
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 102 NMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred HHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 100 012467888896 7776555443
No 203
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.29 E-value=3.9e+02 Score=29.56 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--------------CC-CCCCCEEEeeC--CCcchhh
Q 005250 377 VGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--------------NF-ESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 377 ~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--------------~~-~~~ppvgILPl--GTGNDlA 429 (706)
++.+.+++...+.||++|| |++..+.-.+.-. .. ....|+..+|. |||--..
T Consensus 74 ~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t 142 (376)
T cd08193 74 AAVEAARAAGADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVT 142 (376)
T ss_pred HHHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhC
Confidence 4566677667788999988 7777666554221 00 13468888886 5554433
Done!