Query 005250
Match_columns 706
No_of_seqs 329 out of 1617
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 9E-45 3.1E-49 386.5 25.4 283 333-664 7-300 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 3.1E-40 1.1E-44 356.3 24.0 287 334-669 24-323 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 6.6E-40 2.3E-44 353.1 23.2 283 334-666 29-321 (332)
4 3pfq_A PKC-B, PKC-beta, protei 99.8 2.6E-20 9E-25 218.2 4.0 131 61-211 29-164 (674)
5 1r79_A Diacylglycerol kinase, 99.7 2.2E-17 7.4E-22 140.8 6.6 71 124-206 3-83 (84)
6 2an1_A Putative kinase; struct 99.4 1.9E-12 6.4E-17 136.4 15.9 245 334-663 5-273 (292)
7 1yt5_A Inorganic polyphosphate 99.4 3.1E-12 1.1E-16 132.6 12.4 231 336-663 2-239 (258)
8 1u0t_A Inorganic polyphosphate 99.2 1.6E-10 5.4E-15 122.7 18.5 247 334-663 4-285 (307)
9 2i2c_A Probable inorganic poly 99.1 8.8E-10 3E-14 115.0 18.1 237 336-664 2-250 (272)
10 2enn_A NPKC-theta, protein kin 99.1 1.3E-11 4.3E-16 104.2 2.5 65 57-128 11-75 (77)
11 2yuu_A NPKC-delta, protein kin 99.0 2.5E-10 8.7E-15 97.6 4.5 61 64-131 12-72 (83)
12 2enz_A NPKC-theta, protein kin 98.9 5.8E-10 2E-14 90.9 4.9 54 67-127 10-63 (65)
13 1ptq_A Protein kinase C delta 98.9 4.8E-10 1.7E-14 86.4 3.0 50 70-126 1-50 (50)
14 1y8f_A UNC-13 homolog A, MUNC1 98.9 8.1E-10 2.8E-14 90.3 3.6 54 68-128 12-65 (66)
15 3uej_A NPKC-delta, protein kin 98.9 4.9E-10 1.7E-14 91.3 1.5 55 67-128 7-61 (65)
16 2db6_A SH3 and cysteine rich d 98.8 6.6E-10 2.3E-14 92.9 2.1 58 65-129 13-71 (74)
17 2eli_A Protein kinase C alpha 98.8 1.9E-09 6.5E-14 92.6 4.7 58 65-129 13-70 (85)
18 1faq_A RAF-1; transferase, ser 98.8 1.7E-09 5.7E-14 84.0 3.3 50 68-128 2-51 (52)
19 2row_A RHO-associated protein 98.7 3.5E-09 1.2E-13 90.1 1.7 58 66-128 21-81 (84)
20 2fnf_X Putative RAS effector N 98.6 2.3E-08 7.8E-13 83.0 4.5 52 66-127 20-72 (72)
21 1rfh_A RAS association (ralgds 98.6 1.7E-08 5.9E-13 80.5 2.5 51 67-127 8-59 (59)
22 3ky9_A Proto-oncogene VAV; cal 98.5 4.5E-08 1.5E-12 112.8 4.0 85 39-132 489-573 (587)
23 4b6d_A RAC GTPase-activating p 98.4 1.6E-07 5.5E-12 75.2 3.4 53 68-128 7-59 (61)
24 2enz_A NPKC-theta, protein kin 98.3 7.1E-07 2.4E-11 72.5 5.1 55 136-203 10-64 (65)
25 2vrw_B P95VAV, VAV1, proto-onc 98.3 3.4E-07 1.2E-11 100.5 3.8 80 41-129 319-398 (406)
26 1ptq_A Protein kinase C delta 98.1 1.6E-06 5.3E-11 66.5 4.0 49 139-196 1-49 (50)
27 1y8f_A UNC-13 homolog A, MUNC1 98.0 2.1E-06 7.3E-11 69.9 3.2 52 136-196 11-62 (66)
28 2eli_A Protein kinase C alpha 98.0 4.8E-06 1.6E-10 71.3 5.4 52 136-196 15-66 (85)
29 2enn_A NPKC-theta, protein kin 97.9 3.4E-06 1.2E-10 70.8 2.8 52 136-196 21-72 (77)
30 3uej_A NPKC-delta, protein kin 97.9 5.3E-06 1.8E-10 67.3 3.6 51 137-196 8-58 (65)
31 2yuu_A NPKC-delta, protein kin 97.9 6.7E-06 2.3E-10 70.0 4.3 52 136-196 15-66 (83)
32 2row_A RHO-associated protein 97.9 5.8E-06 2E-10 70.3 3.7 54 136-196 22-78 (84)
33 1faq_A RAF-1; transferase, ser 97.9 4.9E-06 1.7E-10 64.3 2.8 46 138-196 3-48 (52)
34 1kbe_A Kinase suppressor of RA 97.9 8.2E-06 2.8E-10 62.2 3.4 46 136-195 2-47 (49)
35 2fnf_X Putative RAS effector N 97.8 1.2E-05 4.2E-10 66.5 4.6 50 136-196 21-70 (72)
36 1rfh_A RAS association (ralgds 97.8 1.1E-05 3.6E-10 64.2 3.6 49 136-196 8-57 (59)
37 2db6_A SH3 and cysteine rich d 97.8 4.3E-06 1.5E-10 69.6 1.0 51 136-195 15-65 (74)
38 1kbe_A Kinase suppressor of RA 97.7 1.9E-05 6.5E-10 60.2 3.5 43 69-123 4-46 (49)
39 1r79_A Diacylglycerol kinase, 97.7 2E-05 6.7E-10 67.1 3.8 57 66-128 24-80 (84)
40 4b6d_A RAC GTPase-activating p 97.6 2.2E-05 7.6E-10 62.8 3.0 50 137-196 7-56 (61)
41 3cxl_A N-chimerin; SH2, RHO-GA 97.5 3E-05 1E-09 86.7 3.0 55 67-128 207-261 (463)
42 3pfq_A PKC-B, PKC-beta, protei 97.4 5.9E-05 2E-09 88.1 3.9 56 65-127 98-153 (674)
43 3afo_A NADH kinase POS5; alpha 97.0 0.00065 2.2E-08 73.9 6.5 116 333-467 40-181 (388)
44 2vrw_B P95VAV, VAV1, proto-onc 96.2 0.0026 8.8E-08 69.5 4.4 50 136-194 344-393 (406)
45 3cxl_A N-chimerin; SH2, RHO-GA 96.0 0.0035 1.2E-07 69.8 4.0 51 137-196 208-258 (463)
46 1z0s_A Probable inorganic poly 95.8 0.19 6.5E-06 52.0 15.9 92 335-456 30-122 (278)
47 3ky9_A Proto-oncogene VAV; cal 95.8 0.0051 1.8E-07 70.5 4.2 50 136-194 516-565 (587)
48 1v5n_A PDI-like hypothetical p 86.0 0.41 1.4E-05 40.8 2.8 52 61-123 28-80 (89)
49 2kwj_A Zinc finger protein DPF 85.9 0.48 1.6E-05 42.2 3.3 87 84-191 3-89 (114)
50 3pfn_A NAD kinase; structural 77.9 3.5 0.00012 44.2 6.9 101 541-663 231-345 (365)
51 1v5n_A PDI-like hypothetical p 76.3 1.2 4.1E-05 37.9 2.2 32 155-192 47-78 (89)
52 3v43_A Histone acetyltransfera 75.5 1.8 6.1E-05 38.3 3.3 87 83-191 6-93 (112)
53 2ysm_A Myeloid/lymphoid or mix 73.0 5.9 0.0002 34.7 6.0 80 81-191 6-85 (111)
54 4ayb_P DNA-directed RNA polyme 67.4 3.1 0.00011 30.9 2.3 33 157-189 5-37 (48)
55 2ct0_A Non-SMC element 1 homol 64.2 2.2 7.6E-05 35.0 1.2 32 81-121 14-45 (74)
56 3nw0_A Non-structural maintena 61.2 2.9 0.0001 42.1 1.7 33 81-122 179-211 (238)
57 4gne_A Histone-lysine N-methyl 59.3 7 0.00024 34.4 3.6 71 81-192 14-86 (107)
58 1wil_A KIAA1045 protein; ring 58.7 6 0.0002 33.1 2.8 36 152-193 12-47 (89)
59 3jzd_A Iron-containing alcohol 54.6 26 0.0009 37.1 7.9 79 335-422 37-121 (358)
60 1wil_A KIAA1045 protein; ring 54.2 4.3 0.00015 34.0 1.2 33 83-123 16-48 (89)
61 2lnd_A De novo designed protei 53.7 4.5 0.00015 33.4 1.3 48 332-384 49-97 (112)
62 2lri_C Autoimmune regulator; Z 52.8 9.1 0.00031 30.5 3.0 33 151-191 8-40 (66)
63 1sg6_A Pentafunctional AROM po 50.4 13 0.00046 39.8 4.8 90 334-429 36-148 (393)
64 2ct0_A Non-SMC element 1 homol 49.5 13 0.00043 30.4 3.4 41 156-203 16-57 (74)
65 3hl0_A Maleylacetate reductase 49.0 37 0.0013 35.8 8.0 79 335-422 35-119 (353)
66 3iv7_A Alcohol dehydrogenase I 48.4 35 0.0012 36.2 7.7 80 334-422 37-120 (364)
67 1oj7_A Hypothetical oxidoreduc 47.6 29 0.00099 37.3 7.0 91 335-428 51-167 (408)
68 1o2d_A Alcohol dehydrogenase, 46.5 1E+02 0.0034 32.6 10.9 86 335-423 41-149 (371)
69 2yql_A PHD finger protein 21A; 43.4 13 0.00044 28.4 2.4 33 151-191 5-37 (56)
70 3nw0_A Non-structural maintena 43.1 14 0.00049 36.9 3.3 33 155-194 180-212 (238)
71 1f62_A Transcription factor WS 39.6 17 0.00058 26.9 2.5 31 156-191 1-31 (51)
72 2yt5_A Metal-response element- 37.4 18 0.00062 28.3 2.5 36 153-191 4-39 (66)
73 3uhj_A Probable glycerol dehyd 37.1 37 0.0013 36.4 5.7 85 335-427 53-143 (387)
74 1xmp_A PURE, phosphoribosylami 36.9 75 0.0026 30.1 6.9 83 334-425 10-100 (170)
75 1wev_A Riken cDNA 1110020M19; 36.4 16 0.00054 30.7 2.1 34 83-121 17-50 (88)
76 2ywx_A Phosphoribosylaminoimid 35.2 72 0.0025 29.8 6.5 65 352-421 13-82 (157)
77 1pfk_A Phosphofructokinase; tr 35.0 56 0.0019 34.1 6.4 51 375-430 83-133 (320)
78 2hig_A 6-phospho-1-fructokinas 34.9 45 0.0015 36.9 5.9 53 375-429 178-233 (487)
79 3oow_A Phosphoribosylaminoimid 34.7 1.5E+02 0.005 27.9 8.6 83 334-425 4-94 (166)
80 1we9_A PHD finger family prote 33.4 24 0.00083 27.4 2.6 36 81-122 5-40 (64)
81 1zxx_A 6-phosphofructokinase; 32.1 57 0.0019 34.1 5.9 52 374-430 81-132 (319)
82 3rg8_A Phosphoribosylaminoimid 31.6 1.1E+02 0.0039 28.5 7.2 72 346-422 10-90 (159)
83 2l5u_A Chromodomain-helicase-D 31.2 23 0.0008 27.4 2.1 30 154-191 10-39 (61)
84 2yt5_A Metal-response element- 31.0 23 0.00077 27.7 2.0 35 82-121 6-40 (66)
85 4b4k_A N5-carboxyaminoimidazol 30.8 1.2E+02 0.0042 28.8 7.4 85 329-421 16-108 (181)
86 2ku3_A Bromodomain-containing 30.4 31 0.0011 27.8 2.8 36 153-191 14-49 (71)
87 1mm2_A MI2-beta; PHD, zinc fin 30.3 25 0.00086 27.3 2.2 30 82-121 9-38 (61)
88 2puy_A PHD finger protein 21A; 29.9 29 0.00099 26.7 2.4 29 155-191 5-33 (60)
89 2ku3_A Bromodomain-containing 29.7 23 0.00079 28.5 1.9 36 81-121 15-50 (71)
90 2gru_A 2-deoxy-scyllo-inosose 29.0 81 0.0028 33.3 6.7 83 334-422 34-128 (368)
91 3bfj_A 1,3-propanediol oxidore 28.4 1.8E+02 0.0062 30.6 9.3 85 335-422 34-142 (387)
92 1xwh_A Autoimmune regulator; P 27.4 30 0.001 27.3 2.1 30 82-121 8-37 (66)
93 1mm2_A MI2-beta; PHD, zinc fin 27.2 27 0.00092 27.1 1.8 29 155-191 9-37 (61)
94 1twd_A Copper homeostasis prot 26.8 43 0.0015 33.8 3.7 52 372-424 127-178 (256)
95 2yql_A PHD finger protein 21A; 26.6 32 0.0011 26.0 2.2 31 81-121 8-38 (56)
96 3okf_A 3-dehydroquinate syntha 26.5 1.4E+02 0.0047 32.0 7.9 83 334-422 62-157 (390)
97 1xwh_A Autoimmune regulator; P 26.5 36 0.0012 26.8 2.5 30 154-191 7-36 (66)
98 3ce9_A Glycerol dehydrogenase; 26.3 1.2E+02 0.004 31.7 7.3 84 335-426 35-124 (354)
99 1wee_A PHD finger family prote 26.0 31 0.0011 27.6 2.0 37 80-123 14-50 (72)
100 3kuu_A Phosphoribosylaminoimid 25.7 2.1E+02 0.0071 27.1 7.9 72 346-422 20-99 (174)
101 4hf7_A Putative acylhydrolase; 25.6 54 0.0019 31.0 4.1 39 392-432 57-95 (209)
102 2x9a_A Attachment protein G3P; 25.4 18 0.00062 28.4 0.5 11 389-399 40-50 (65)
103 1fp0_A KAP-1 corepressor; PHD 25.3 55 0.0019 27.6 3.5 30 154-191 24-53 (88)
104 1we9_A PHD finger family prote 25.3 42 0.0014 26.0 2.7 36 153-192 4-39 (64)
105 1f62_A Transcription factor WS 25.0 26 0.0009 25.9 1.3 31 84-121 2-32 (51)
106 3clh_A 3-dehydroquinate syntha 24.3 1.5E+02 0.0053 30.8 7.7 84 334-423 26-120 (343)
107 4a3s_A 6-phosphofructokinase; 24.2 64 0.0022 33.6 4.6 50 375-429 82-131 (319)
108 3o70_A PHD finger protein 13; 24.1 36 0.0012 27.1 2.1 35 81-123 18-52 (68)
109 2ri7_A Nucleosome-remodeling f 24.0 17 0.00059 34.2 0.2 34 81-121 7-40 (174)
110 2l43_A N-teminal domain from h 24.0 20 0.0007 30.1 0.6 35 82-121 25-59 (88)
111 2jmi_A Protein YNG1, ING1 homo 23.8 34 0.0011 29.0 1.9 33 80-121 24-59 (90)
112 2puy_A PHD finger protein 21A; 23.6 35 0.0012 26.2 1.9 30 82-121 5-34 (60)
113 1o4v_A Phosphoribosylaminoimid 23.3 2.1E+02 0.0071 27.3 7.5 82 335-425 13-102 (183)
114 2ro1_A Transcription intermedi 23.2 32 0.0011 33.0 1.9 29 155-191 2-30 (189)
115 3gw6_A Endo-N-acetylneuraminid 23.1 26 0.00088 35.6 1.2 14 387-400 46-59 (275)
116 3o36_A Transcription intermedi 22.7 36 0.0012 32.3 2.1 28 83-120 5-32 (184)
117 3lte_A Response regulator; str 22.6 2.4E+02 0.0083 23.3 7.5 81 353-434 18-100 (132)
118 1wen_A Inhibitor of growth fam 22.4 39 0.0014 27.1 2.0 32 81-121 15-49 (71)
119 1weu_A Inhibitor of growth fam 22.4 52 0.0018 27.9 2.8 32 81-121 35-69 (91)
120 2bdq_A Copper homeostasis prot 22.2 47 0.0016 32.9 2.9 52 373-424 133-186 (224)
121 1jq5_A Glycerol dehydrogenase; 22.2 1.5E+02 0.0051 31.1 7.1 81 335-423 32-119 (370)
122 2k16_A Transcription initiatio 22.1 43 0.0015 26.9 2.2 35 153-192 16-50 (75)
123 1gnf_A Transcription factor GA 22.0 42 0.0014 24.8 1.9 33 81-114 3-35 (46)
124 1wep_A PHF8; structural genomi 21.9 29 0.001 28.3 1.2 35 81-122 11-45 (79)
125 3ox4_A Alcohol dehydrogenase 2 21.5 1.6E+02 0.0056 31.1 7.3 87 334-424 31-140 (383)
126 2k16_A Transcription initiatio 21.4 24 0.00081 28.4 0.5 36 80-122 16-51 (75)
127 2e6r_A Jumonji/ARID domain-con 21.4 40 0.0014 28.5 2.0 31 83-120 17-47 (92)
128 2vut_I AREA, nitrogen regulato 21.1 28 0.00096 25.3 0.7 31 82-113 1-31 (43)
129 1wev_A Riken cDNA 1110020M19; 20.7 40 0.0014 28.2 1.8 34 155-191 16-49 (88)
130 3lft_A Uncharacterized protein 20.5 1.9E+02 0.0066 28.5 7.3 82 333-416 132-215 (295)
131 3o8l_A 6-phosphofructokinase, 20.3 85 0.0029 36.7 5.0 53 377-430 480-535 (762)
132 3lqh_A Histone-lysine N-methyl 20.1 38 0.0013 32.5 1.7 33 81-119 1-36 (183)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=9e-45 Score=386.47 Aligned_cols=283 Identities=20% Similarity=0.219 Sum_probs=220.2
Q ss_pred CCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 333 DARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF--QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~--~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
.|++++||+||+||++++.+++++++.+|...++ +++..|+.++++.++++++ ..+.|+++||||||++|+|+|...
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~ 86 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPL 86 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhC
Confidence 4789999999999999998999999999987664 6777788999999988875 457899999999999999999864
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
. ..+|||+||+||||||||+||++. ++.++++.+.++....+|.+++ +.++|+|+
T Consensus 87 ~--~~~~l~iiP~Gt~N~~ar~lg~~~---------~~~~a~~~i~~g~~~~iDlg~v--------------~~~~F~~~ 141 (304)
T 3s40_A 87 E--IRPTLAIIPGGTCNDFSRTLGVPQ---------NIAEAAKLITKEHVKPVDVAKA--------------NGQHFLNF 141 (304)
T ss_dssp S--SCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHTTCCEEEEEEEEE--------------TTEEESSE
T ss_pred C--CCCcEEEecCCcHHHHHHHcCCCc---------cHHHHHHHHHhCCeEEEEEEEE--------------CCEEEEEE
Confidence 2 468999999999999999999852 5777888888888888887755 45799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~ 569 (706)
+|+|+||+|+.+++..+ ++.+|+++|++++++.++. ..+++++|++||+.++. ++..++|+|.++|
T Consensus 142 ~~~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~v~v~N~~~~ 207 (304)
T 3s40_A 142 WGIGLVSEVSNNIDAEE--------KAKLGKIGYYLSTIRTVKN----AETFPVKITYDGQVYED--EAVLVMVGNGEYL 207 (304)
T ss_dssp EEEC--------------------------CHHHHTTTC----------CCEEEEEEETTEEEEE--EEEEEEEECSSEE
T ss_pred EeehHHHHHHHhcCHHH--------hhcCCchHHHHHHHHHHhh----cCCceEEEEECCEEEEe--EEEEEEEECCCcC
Confidence 99999999999876321 4568999999999998874 46789999999998763 6889999999999
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCccc--chhhhh------cccCceEEEEecEEEEEeCCCccEEecCC
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWH--LGKLQV------GLSQARRLAQGKVIRIHSSSPFPVQIDGE 641 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~--l~~l~~------g~~~~~rl~q~~~i~I~~~~~~pvqvDGE 641 (706)
|||+.++|.+ +++||+|||+.+..... +..+.. ...+.+++.++++++|++.+++++|+|||
T Consensus 208 Ggg~~~~p~a----------~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~~~~~~~~DGE 277 (304)
T 3s40_A 208 GGIPSFIPNV----------KCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEEEKEVDTDGE 277 (304)
T ss_dssp TTEECSSTTC----------CTTSSCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEESSCCEEEEC--
T ss_pred CCCcccCCCC----------cCCCCEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeCCCcEEEeCCC
Confidence 9999999876 58999999999987532 111111 12457899999999999999999999999
Q ss_pred CCCCceEEEEEEcCceEEEEeCC
Q 005250 642 PFIQQAGCLDITHHGQVFTLRRA 664 (706)
Q Consensus 642 ~~~~~P~~I~I~~~~~~~ml~~~ 664 (706)
++...|++|++.|+++.+++|+.
T Consensus 278 ~~~~~p~~i~v~p~al~v~~p~~ 300 (304)
T 3s40_A 278 SSLHTPCQIELLQGHFTMIYNPA 300 (304)
T ss_dssp CCEESSEEEEEEEEEEEEECCTT
T ss_pred CCCCceEEEEEECCeEEEEechh
Confidence 99999999999999999999864
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=3.1e-40 Score=356.34 Aligned_cols=287 Identities=18% Similarity=0.167 Sum_probs=229.4
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
|++++||+||+||++++.++++++..+|...++ +++..|+.++++.+++++. ..+.||++||||||++|+++|.+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~ 103 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 103 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhC
Confidence 568999999999999998899999999988775 6666677788888877665 357899999999999999999653
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNY 489 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~ 489 (706)
...+|||+||+||+|||||.||++. ++.++++.+.++....+|.+++ +.++|+|+
T Consensus 104 --~~~~pl~iIP~GT~N~lAr~Lg~~~---------~~~~al~~i~~g~~~~iD~g~v--------------~~r~fl~~ 158 (337)
T 2qv7_A 104 --PNRPKLGVIPMGTVNDFGRALHIPN---------DIMGALDVIIEGHSTKVDIGKM--------------NNRYFINL 158 (337)
T ss_dssp --SSCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHHHTCEEEEEEEEE--------------TTEEESSE
T ss_pred --CCCCcEEEecCCcHhHHHHHcCCCC---------CHHHHHHHHHcCCcEEEEEEEE--------------CCEEEEEE
Confidence 2578999999999999999999852 5777888888888888887654 35799999
Q ss_pred eeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCcc
Q 005250 490 LGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGSY 569 (706)
Q Consensus 490 ~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~~ 569 (706)
+++|+||+|+.+++..+ ++.+|+++|...++++++. ..+++++|++||+.++ .+...+++.|.++|
T Consensus 159 ~~~G~~a~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~--~~~~~v~v~n~~~~ 224 (337)
T 2qv7_A 159 AAGGQLTQVSYETPSKL--------KSIVGPFAYYIKGFEMLPQ----MKAVDLRIEYDGNVFQ--GEALLFFLGLTNSM 224 (337)
T ss_dssp EEEECBCC---------------------CGGGSCCCTTTTGGG----BCCEEEEEEETTEEEE--EEEEEEEEESSCCC
T ss_pred eeecccHHHHHHhhHHH--------HhccChHHHHHHHHHHHHh----CCCccEEEEECCEEEE--eeEEEEEEECCCCC
Confidence 99999999998876431 3457899999998888763 4678999999999876 36788999999999
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchh--h----hhc---ccCceEEEEecEEEEEeCCCccEEecC
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGK--L----QVG---LSQARRLAQGKVIRIHSSSPFPVQIDG 640 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~--l----~~g---~~~~~rl~q~~~i~I~~~~~~pvqvDG 640 (706)
+||+.++|.+ +++||.|||+.+.....+.. + ..| ..+.+++.++++++|+..+++++|+||
T Consensus 225 gGg~~i~P~a----------~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~~~~~~iDG 294 (337)
T 2qv7_A 225 AGFEKLVPDA----------KLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDG 294 (337)
T ss_dssp SSCSCSSTTC----------CSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSSCCEEEETT
T ss_pred CCCCccCCCC----------cCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECCCCeEEECC
Confidence 9999999886 58999999999997532221 1 112 136789999999999988889999999
Q ss_pred CCCCCceEEEEEEcCceEEEEeCCCCCCC
Q 005250 641 EPFIQQAGCLDITHHGQVFTLRRAPEEPR 669 (706)
Q Consensus 641 E~~~~~P~~I~I~~~~~~~ml~~~~~~~~ 669 (706)
|++...|++|++.++.+.++.|....++.
T Consensus 295 E~~~~~~i~i~v~p~~l~v~~p~~~~~~~ 323 (337)
T 2qv7_A 295 EYGGKLPANFLNLERHIDVFAPNDIVNEE 323 (337)
T ss_dssp EEEEESCEEEEEEEEEEEEECCTTSCCTT
T ss_pred CcCCCCcEEEEEEcCeEEEEecCcccccc
Confidence 99998999999999999999987655443
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=6.6e-40 Score=353.11 Aligned_cols=283 Identities=19% Similarity=0.174 Sum_probs=221.8
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF---QYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~---~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
+++++||+||+||++ +.++++...|...++ +++..|..++++.+++++. ..+.|||+||||||++|+++|.+.
T Consensus 29 ~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp -CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhhc
Confidence 578999999999987 456777777776654 5666566777777766554 467999999999999999999864
Q ss_pred CCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccc-eEEE
Q 005250 410 NFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSK-FMLN 488 (706)
Q Consensus 410 ~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~-~f~N 488 (706)
.....+|||+||+||+|||||+|+|+. ++.+.++.+.++....+|.+.+ +.+ +|+|
T Consensus 106 ~~~~~~plgiiP~Gt~N~fa~~l~i~~---------~~~~al~~i~~g~~~~iDlg~v--------------~~r~~fl~ 162 (332)
T 2bon_A 106 EGDDIPALGILPLGTANDFATSVGIPE---------ALDKALKLAIAGDAIAIDMAQV--------------NKQTCFIN 162 (332)
T ss_dssp CSSCCCEEEEEECSSSCHHHHHTTCCS---------SHHHHHHHHHHSEEEEEEEEEE--------------TTSCEESS
T ss_pred ccCCCCeEEEecCcCHHHHHHhcCCCC---------CHHHHHHHHHcCCeEEeeEEEE--------------CCceEEEE
Confidence 323578999999999999999999852 5677888888888888887754 235 9999
Q ss_pred EeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEeccCc
Q 005250 489 YLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLNIGS 568 (706)
Q Consensus 489 ~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~Ni~~ 568 (706)
++|+|+||+|+.+++.. .++++|+++|++.+++.++ ...+++++|++||+.++. +...++++|+++
T Consensus 163 ~~~~G~da~v~~~~~~~--------~k~~~G~~~Y~~~~l~~l~----~~~~~~~~i~~dg~~~~~--~~~~v~v~N~~~ 228 (332)
T 2bon_A 163 MATGGFGTRITTETPEK--------LKAALGSVSYIIHGLMRMD----TLQPDRCEIRGENFHWQG--DALVIGIGNGRQ 228 (332)
T ss_dssp EEEEEEEEEC------------------CCHHHHHHHHHTSCEE----EEECEEEEEEETTEEEEE--EESEEEEESSSC
T ss_pred EEeECccHHHHHHhhHH--------hHhcccHHHHHHHHHHHHh----hCCCeeEEEEECCEEEEE--EEEEEEEECCCc
Confidence 99999999999776531 1345799999998766554 346789999999998763 678899999999
Q ss_pred cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhh----hhc-ccCceEEEEecEEEEEeCCCccEEecCCCC
Q 005250 569 YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKL----QVG-LSQARRLAQGKVIRIHSSSPFPVQIDGEPF 643 (706)
Q Consensus 569 ~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l----~~g-~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~ 643 (706)
|+||+.++|.+ +++||.|||+.+....++..+ ..| ..+.+++.++++|+|+..+++++|+|||++
T Consensus 229 ~ggg~~i~P~a----------~~~DG~Ldv~iv~~~~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~~~~~~~iDGE~~ 298 (332)
T 2bon_A 229 AGGGQQLCPNA----------LINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPL 298 (332)
T ss_dssp BTTTBCSCTTC----------CTTSSCEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEEEEEEEEEETTEEE
T ss_pred cCCCcccCCCC----------CCCCCeEEEEEECCHHHHHHHHHHHHcCCCCCcEEEEEeeEEEEEECCCCeEEecCCCC
Confidence 99999999986 489999999999876221111 111 126788999999999987789999999999
Q ss_pred CCceEEEEEEcCceEEEEeCCCC
Q 005250 644 IQQAGCLDITHHGQVFTLRRAPE 666 (706)
Q Consensus 644 ~~~P~~I~I~~~~~~~ml~~~~~ 666 (706)
...|++|++.|+.+.+++|+..+
T Consensus 299 ~~~~~~i~v~p~al~vl~p~~~~ 321 (332)
T 2bon_A 299 SGQNFHIEILPAALRCRLPPDCP 321 (332)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCT
T ss_pred CCceEEEEEECCeeEEEeCCCcc
Confidence 99999999999999999987654
No 4
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.78 E-value=2.6e-20 Score=218.19 Aligned_cols=131 Identities=22% Similarity=0.383 Sum_probs=50.7
Q ss_pred ccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcccccc---ccccc
Q 005250 61 KKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQA---CFSHV 137 (706)
Q Consensus 61 ~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~---~~~~~ 137 (706)
.+..+...+|.|.+++|. +|+||++|.++||| ++ +||++|..|++++|++|+.++...|.+.... ....+
T Consensus 29 ~~~~~~~~~H~f~~~~~~--~p~~C~~C~~~i~g---~~--~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~ 101 (674)
T 3pfq_A 29 QKNVHEVKNHKFTARFFK--QPTFCSHCTDFIWG---FG--KQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRS 101 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCcccCCceEEeeeCC--CCCccccccccccc---cC--CceeECCCCCCCcChhhcCcCcccCCCcccccccccccC
Confidence 334556779999999876 99999999999976 44 7889999999999999999999999876432 12358
Q ss_pred ccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCC--CCCCCCCcee
Q 005250 138 KHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVC--DLGPHRRLIL 211 (706)
Q Consensus 138 ~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~C--dlG~~~~~Il 211 (706)
+|+|+. +++..+++|++|++.+++... +|++|.||+++||.+|...++.. | |-...+..|.
T Consensus 102 ~h~~~~------~~~~~~~~C~~C~~~l~g~~~---qg~~C~~C~~~~H~~C~~~v~~~----C~~d~~~~~g~i~ 164 (674)
T 3pfq_A 102 KHKFKI------HTYSSPTFCDHCGSLLYGLIH---QGMKCDTCMMNVHKRCVMNVPSL----CGTDHTERRGRIY 164 (674)
T ss_dssp CCCCCE------ECCSSCCCCSSSCSCCBBSSS---CEECCSSSCCCBCSSTTSSSCCC----SSSCSSCCSCEEE
T ss_pred Ccceee------cCCCCCCCCCccccccchhhc---CccccccCCcchhhhhhhccCcc----ccccccccccccc
Confidence 999998 589999999999999876443 67999999999999999999876 9 4455555543
No 5
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=99.69 E-value=2.2e-17 Score=140.82 Aligned_cols=71 Identities=28% Similarity=0.711 Sum_probs=61.9
Q ss_pred ccCcccccccc----------cccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhc
Q 005250 124 KDCKCVAQACF----------SHVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIM 193 (706)
Q Consensus 124 ~~Ck~~~~~~~----------~~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 193 (706)
.+||+++.+.. ..++|||++ ||++.+++|.+|+|.|++.+ +++++||.||+++||++|.+++
T Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~H~Wve------GNl~~~s~C~vC~k~c~s~~--~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 3 SGSSGTTLASIGKDIIEDADGIAMPHQWLE------GNLPVSAKCTVCDKTCGSVL--RLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCBCCCEEE------SCCCTTCBCSSSCCBCCCTT--TCCCEEESSSCCEECHHHHHHC
T ss_pred CCccceecccccccccccCCCccceeeEEc------cCCCCCCEeCCCCCEeCCcc--CCCCCCCcccChhHHHHHHHhc
Confidence 57998875432 268999999 69999999999999999876 5589999999999999999999
Q ss_pred ccCCCCCCCCCCC
Q 005250 194 SKESGDVCDLGPH 206 (706)
Q Consensus 194 ~~~~~~~CdlG~~ 206 (706)
+.+ ||||++
T Consensus 75 ~~e----C~lG~~ 83 (84)
T 1r79_A 75 LTK----CSGPSS 83 (84)
T ss_dssp CSC----BCCSCC
T ss_pred cCc----CCCCCC
Confidence 887 999987
No 6
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.41 E-value=1.9e-12 Score=136.40 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=137.6
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChh--------HHHHHHHhCCCCeEEEEcCchhHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPE--------VGLELFSNFQYFRVLVCGGDGTVAWVLN 404 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~--------~al~l~~~~~~~~Ilv~GGDGTV~~VLn 404 (706)
|++++||+||.++. ..+.++.+...|...++ +.+..+.... .+.+.. ....+.||++|||||++++++
T Consensus 5 mkki~ii~np~~~~--~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEI-GQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHH-HHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhc-ccCCCEEEEEcCcHHHHHHHH
Confidence 67899999998644 34566777777765543 3333221000 001111 113578999999999999999
Q ss_pred HHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccc
Q 005250 405 AIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSK 484 (706)
Q Consensus 405 ~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~ 484 (706)
++.+.+ .|.+|| |+||.|+|++ ++ + .++.++++.+.++... .+.+
T Consensus 82 ~~~~~~---~P~lGI-~~Gt~gfla~-~~-~---------~~~~~al~~i~~g~~~--------------------~~~r 126 (292)
T 2an1_A 82 TLARYD---INVIGI-NRGNLGFLTD-LD-P---------DNALQQLSDVLEGRYI--------------------SEKR 126 (292)
T ss_dssp HHTTSS---CEEEEB-CSSSCCSSCC-BC-T---------TSHHHHHHHHHTTCEE--------------------EEEE
T ss_pred HhhcCC---CCEEEE-ECCCcccCCc-CC-H---------HHHHHHHHHHHcCCCE--------------------EEEe
Confidence 997632 355777 8999888886 33 2 2566777777655321 1235
Q ss_pred eEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHH-hhhcCCCceEEEEECCeEEEecCceeEEEE
Q 005250 485 FMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVD-RTCAELPWQVWLEVDGKGIEIPKDSEGLIV 563 (706)
Q Consensus 485 ~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~-~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v 563 (706)
+|++....+ +..... ..| ++.++.. +.......++++++||+.++- ....+++|
T Consensus 127 ~~l~~~~~~-~~~~~~--------------------~~~---alnev~i~~~~~~~~~~~~v~idg~~~~~-~~~dgliv 181 (292)
T 2an1_A 127 FLLEAQVCQ-QDRQKR--------------------IST---AINEVVLHPGKVAHMIEFEVYIDETFAFS-QRSDGLII 181 (292)
T ss_dssp EEEEEEEEC-C----C--------------------EEE---ESSEEEEEESSTTCCEEEEEEETTEEEEE-EEESEEEE
T ss_pred EEEEEEEEe-CCceEe--------------------eee---EeeeEEEecCCCCceEEEEEEECCEEEEE-EEeCEEEE
Confidence 666644322 111000 001 0111110 000124678899999998752 13555666
Q ss_pred --eccC-c---cccCccccCCCCCCCCCCCccccCCCeEEEEEEeCc-ccchhhhhcccCceEEEEecEEEEEeC---CC
Q 005250 564 --LNIG-S---YMGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGA-WHLGKLQVGLSQARRLAQGKVIRIHSS---SP 633 (706)
Q Consensus 564 --~Ni~-~---~gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~-~~l~~l~~g~~~~~rl~q~~~i~I~~~---~~ 633 (706)
.|.. . .+||..+.|.+ +++.+... .|. + ..+++-+.+.++|+|+.. .+
T Consensus 182 stptGSTay~~SaGG~iv~P~~-----------------~~~~l~pi~p~~--l---~~r~iv~~~~~~i~i~~~~~~~~ 239 (292)
T 2an1_A 182 STPTGSTAYSLSAGGPILTPSL-----------------DAITLVPMFPHT--L---SARPLVINSSSTIRLRFSHRRSD 239 (292)
T ss_dssp ECTGGGGTHHHHTTCCEECTTC-----------------SEEEEEEESCSS--T---TCCCEEEETTCCEEEEECC---C
T ss_pred CCCCchHHHHHhCCCCCCCCCC-----------------CeEEEEecCcCc--C---CCCCEEECCCCEEEEEEccCCCc
Confidence 3443 1 25665555542 34444431 111 1 123555677788888863 57
Q ss_pred ccEEecCCCCCC----ceEEEEEEcCceEEEEeC
Q 005250 634 FPVQIDGEPFIQ----QAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 634 ~pvqvDGE~~~~----~P~~I~I~~~~~~~ml~~ 663 (706)
..+++|||.... .+++|++.++.+.++.++
T Consensus 240 ~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~~ 273 (292)
T 2an1_A 240 LEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPK 273 (292)
T ss_dssp EEEEETTSCCEEECTTCEEEEEEEEEEEEEEEET
T ss_pred eEEEECCCeEEecCCCcEEEEEECCCEEEEEEeC
Confidence 889999998643 489999999999988874
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.35 E-value=3.1e-12 Score=132.55 Aligned_cols=231 Identities=13% Similarity=0.178 Sum_probs=138.9
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPP 415 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~p 415 (706)
++++|+||.||.+ +.++++++...|. -+++.. . + + ......+.|+++|||||+.++++.+.. . .|
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i~~~l~---~~~~~~-~---~--~-~~~~~~D~vv~~GGDGTll~~a~~~~~-~---~P 66 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKISKEHE---VIEFGE-A---N--A-PGRVTADLIVVVGGDGTVLKAAKKAAD-G---TP 66 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHHTTTSE---EEEEEE-S---S--S-CSCBCCSEEEEEECHHHHHHHHTTBCT-T---CE
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHhc---CCceec-c---c--c-cccCCCCEEEEEeCcHHHHHHHHHhCC-C---CC
Confidence 5899999999987 7778888887777 234331 1 1 0 011145889999999999999998864 2 35
Q ss_pred CEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeeccch
Q 005250 416 PVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGCD 495 (706)
Q Consensus 416 pvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~siG~D 495 (706)
.+|| ++||.+.|+ .+. + .++.+.++.+.++.... +.++|++....+-.
T Consensus 67 ilGI-n~G~~Gfl~-~~~-~---------~~~~~al~~i~~g~~~i--------------------~~r~~l~~~~~~~~ 114 (258)
T 1yt5_A 67 MVGF-KAGRLGFLT-SYT-L---------DEIDRFLEDLRNWNFRE--------------------ETRWFIQIESELGN 114 (258)
T ss_dssp EEEE-ESSSCCSSC-CBC-G---------GGHHHHHHHHHTTCCEE--------------------EEEEEEEEEETTEE
T ss_pred EEEE-ECCCCCccC-cCC-H---------HHHHHHHHHHHcCCceE--------------------EEEEEEEEEEcCCc
Confidence 5887 599997666 454 1 35667777766553321 23455543322110
Q ss_pred hhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec--cC-cc---
Q 005250 496 AKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN--IG-SY--- 569 (706)
Q Consensus 496 A~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N--i~-~~--- 569 (706)
+.+..++- +.+.......++++++||+.++- ....+++|+. .. .|
T Consensus 115 ~~alNev~----------------------------i~~~~~~~~~~~~v~idg~~~~~-~~~dGlivsTptGSTaY~~S 165 (258)
T 1yt5_A 115 HLALNDVT----------------------------LERDLSGKMVEIEVEVEHHSSMW-FFADGVVISTPTGSTAYSLS 165 (258)
T ss_dssp EEESSEEE----------------------------EECCTTSCCEEEEEEETTSCCEE-EEESEEEEECTGGGGTTTTT
T ss_pred ceeeeEEE----------------------------EecCCCCceEEEEEEECCEEEEE-EEccEEEEEcCCCcHHHHhh
Confidence 00000000 00000134568899999987641 1345666643 22 23
Q ss_pred ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEeCCCccEEecCCCCCC-ceE
Q 005250 570 MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHSSSPFPVQIDGEPFIQ-QAG 648 (706)
Q Consensus 570 gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~~~~~pvqvDGE~~~~-~P~ 648 (706)
+||..+.|.. ..+-+.-+. .|. + ..+++-+.+.++|+|+..++..+++|||.... .|+
T Consensus 166 aGGpiv~P~~--------------~~~~i~pi~--p~~--l---~~rp~v~~~~~~i~i~~~~~~~~~~DG~~~~~~~~i 224 (258)
T 1yt5_A 166 IGGPIIFPEC--------------EVLEISPIA--PQF--F---LTRSVVIPSNFKVVVESQRDINMLVDGVLTGKTKRI 224 (258)
T ss_dssp TTCCCCCTTC--------------CEEEEEEES--CST--T---CCCCEEEETTSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcccCCCC--------------CEEEEEEec--ccc--c---cCCCEEECCCCEEEEEECCCEEEEECCCcceeeEEE
Confidence 6665444432 123333222 111 1 12455567788899988778899999998754 579
Q ss_pred EEEEEcCceEEEEeC
Q 005250 649 CLDITHHGQVFTLRR 663 (706)
Q Consensus 649 ~I~I~~~~~~~ml~~ 663 (706)
+|++.++.+.++.+.
T Consensus 225 ~i~~~~~~~~li~~~ 239 (258)
T 1yt5_A 225 EVKKSRRYVRILRPP 239 (258)
T ss_dssp EEEEEEEEEEEEECT
T ss_pred EEEECCCeEEEEEcC
Confidence 999999988887764
No 8
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.25 E-value=1.6e-10 Score=122.73 Aligned_cols=247 Identities=17% Similarity=0.219 Sum_probs=138.4
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhH---------------HHHHH-Hh--C--CCCeEEE
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEV---------------GLELF-SN--F--QYFRVLV 392 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~---------------al~l~-~~--~--~~~~Ilv 392 (706)
|++++||+||.++. +.+.++++...|...++ +.+..+..... ..+.+ +. . ..+.|++
T Consensus 4 m~ki~iI~n~~~~~--~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE
T ss_pred CCEEEEEEeCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE
Confidence 57899999998864 34667777777776553 33332222110 11211 11 1 3578999
Q ss_pred EcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecc
Q 005250 393 CGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREE 472 (706)
Q Consensus 393 ~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~ 472 (706)
+|||||+..+++.+...+ .|.+|| ++||.|.|+. +.. .++.++++.+.++....-+|
T Consensus 82 ~GGDGT~l~a~~~~~~~~---~pvlgi-~~G~~gfl~~-~~~----------~~~~~~~~~i~~g~~~~~~r-------- 138 (307)
T 1u0t_A 82 LGGDGTFLRAAELARNAS---IPVLGV-NLGRIGFLAE-AEA----------EAIDAVLEHVVAQDYRVEDR-------- 138 (307)
T ss_dssp EECHHHHHHHHHHHHHHT---CCEEEE-ECSSCCSSCS-EEG----------GGHHHHHHHHHHTCCEEEEE--------
T ss_pred EeCCHHHHHHHHHhccCC---CCEEEE-eCCCCccCcc-cCH----------HHHHHHHHHHHcCCcEEEEE--------
Confidence 999999999999997642 355775 7999999985 431 25677777777664333222
Q ss_pred cccccccccccceEEEEeeccchhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHH-hhhcCCCceEEEEECCeE
Q 005250 473 NSEYDQRKEQSKFMLNYLGIGCDAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVD-RTCAELPWQVWLEVDGKG 551 (706)
Q Consensus 473 ~~~~g~~~~~~~~f~N~~siG~DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~-~~~k~~~~~v~l~~Dg~~ 551 (706)
.|++ +.++.+....... ..+| ++.- +.......++++++||+.
T Consensus 139 ------------~~l~-~~v~~~g~~~~~~-------------~ALN----------ev~i~~~~~~~~~~~~v~idg~~ 182 (307)
T 1u0t_A 139 ------------LTLD-VVVRQGGRIVNRG-------------WALN----------EVSLEKGPRLGVLGVVVEIDGRP 182 (307)
T ss_dssp ------------CCEE-EEEEETTEEEEEE-------------EESS----------EEEEECSSSSSCEEEEEESSSSE
T ss_pred ------------EEEE-EEEEeCccceece-------------eeee----------eEEEecCCCceEEEEEEEECCEE
Confidence 2221 1111111100000 0011 1110 000123457888999988
Q ss_pred EEecCceeEEEEe--ccC-cc---ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecE
Q 005250 552 IEIPKDSEGLIVL--NIG-SY---MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKV 625 (706)
Q Consensus 552 i~l~~~~~~i~v~--Ni~-~~---gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~ 625 (706)
++- ....+++|. |.. .| +||..++|.. ..+-+.-+. .|. + ..+++-+...++
T Consensus 183 ~~~-~~~dGlivsTptGSTaY~lSaGGpiv~P~~--------------~~~~l~pi~--p~~--l---~~rp~v~~~~~~ 240 (307)
T 1u0t_A 183 VSA-FGCDGVLVSTPTGSTAYAFSAGGPVLWPDL--------------EAILVVPNN--AHA--L---FGRPMVTSPEAT 240 (307)
T ss_dssp EEE-EEESEEEEECTGGGGTHHHHTTCCEECTTC--------------CCEEEEEES--CSS--S---CCCCEEECTTCC
T ss_pred EEE-EcCCEEEEccchhhHHHHhcCCCCccCCCC--------------CeEEEEeec--Ccc--c---cCCCEEECCCCE
Confidence 752 245677776 655 34 7776666653 122222222 121 1 123444556677
Q ss_pred EEEEeC---CCccEEecCCCCC----CceEEEEEEcCceEEEEeC
Q 005250 626 IRIHSS---SPFPVQIDGEPFI----QQAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 626 i~I~~~---~~~pvqvDGE~~~----~~P~~I~I~~~~~~~ml~~ 663 (706)
|+|+.. .+..+++|||... ..+++|++.++...++.++
T Consensus 241 i~i~v~~~~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~~~ 285 (307)
T 1u0t_A 241 IAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLD 285 (307)
T ss_dssp EEEEECTTSCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEECS
T ss_pred EEEEEecCCCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEEeC
Confidence 777653 5688999999752 2579999999999988874
No 9
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.15 E-value=8.8e-10 Score=114.98 Aligned_cols=237 Identities=12% Similarity=0.144 Sum_probs=133.6
Q ss_pred cEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCC
Q 005250 336 PLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPP 415 (706)
Q Consensus 336 pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~p 415 (706)
++.+|+||+ .++.++++++...|...++ ++. ....+.||++|||||+..+++.+.... ..+
T Consensus 2 ki~ii~n~~---~~~~~~~~~l~~~l~~~g~-~v~-------------~~~~D~vv~lGGDGT~l~aa~~~~~~~--~~~ 62 (272)
T 2i2c_A 2 KYMITSKGD---EKSDLLRLNMIAGFGEYDM-EYD-------------DVEPEIVISIGGDGTFLSAFHQYEERL--DEI 62 (272)
T ss_dssp EEEEEECCS---HHHHHHHHHHHHHHTTSSC-EEC-------------SSSCSEEEEEESHHHHHHHHHHTGGGT--TTC
T ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHCCC-EeC-------------CCCCCEEEEEcCcHHHHHHHHHHhhcC--CCC
Confidence 588999963 2456778888888887764 221 124578999999999999999986531 134
Q ss_pred C-EEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceEEEEecccccccccccccceEEEEeeccc
Q 005250 416 P-VAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWKVNIREENSEYDQRKEQSKFMLNYLGIGC 494 (706)
Q Consensus 416 p-vgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~~~~g~~~~~~~~f~N~~siG~ 494 (706)
| +|| |+|| |.|++.+.- +++.++++.+.++....-++..+++.-.. .. |-
T Consensus 63 PilGI-n~G~-lgfl~~~~~----------~~~~~~l~~l~~g~~~i~~r~~L~~~v~~-------~~----------g~ 113 (272)
T 2i2c_A 63 AFIGI-HTGH-LGFYADWRP----------AEADKLVKLLAKGEYQKVSYPLLKTTVKY-------GI----------GK 113 (272)
T ss_dssp EEEEE-ESSS-CCSSCCBCG----------GGHHHHHHHHHTTCCEEEEEEEEEEEEEE-------SS----------SC
T ss_pred CEEEE-eCCC-CCcCCcCCH----------HHHHHHHHHHHcCCCEEEEEEEEEEEEEe-------CC----------Cc
Confidence 5 777 9999 557777641 25677777777664432222222111000 00 00
Q ss_pred hhhhhhHhhhccccCccchhhhhhhhHHHHHHHHHHHHHhhhcCCCceEEEEECCeEEEecCceeEEEEec--cC-cc--
Q 005250 495 DAKVAYEFHVTRQENPQKFSSRFVNKLLYAKEGARDIVDRTCAELPWQVWLEVDGKGIEIPKDSEGLIVLN--IG-SY-- 569 (706)
Q Consensus 495 DA~Va~~f~~~Re~~p~kf~sr~~nkl~Y~~~g~k~l~~~~~k~~~~~v~l~~Dg~~i~l~~~~~~i~v~N--i~-~~-- 569 (706)
..+. ...+|-+. +.+ .....++++++||+.++- -...+++|+. .. .|
T Consensus 114 ---~~~~-------------~~ALNev~---------i~~--~~~~~~~~i~idg~~~~~-~~~DGlivsTptGSTaY~~ 165 (272)
T 2i2c_A 114 ---KEAT-------------YLALNEST---------VKS--SGGPFVVDVVINDIHFER-FRGDGLCMSTPSGTTAYNK 165 (272)
T ss_dssp ---CEEE-------------EEESSEEE---------EEE--SSSCEEEEEEETTEEEEE-EEESEEEEECTGGGGTHHH
T ss_pred ---EEeH-------------HhhhhHhh---------hcc--cCcEEEEEEEECCEEEEE-EECCEEEEEccccHHHHHH
Confidence 0000 00011110 000 013467889999998752 1345666653 33 34
Q ss_pred -ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcccCceEEEEecEEEEEe--CCCccEEecCCCCC--
Q 005250 570 -MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIRIHS--SSPFPVQIDGEPFI-- 644 (706)
Q Consensus 570 -gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~~~~~rl~q~~~i~I~~--~~~~pvqvDGE~~~-- 644 (706)
+||..+.|.. ..+.+.-+.. ..+...+. ..+++-+...++++|+. ..+..+++|||.+.
T Consensus 166 SaGGpiv~P~~--------------~~~~ltpi~p-~~l~~~r~-~~~p~v~~~~~~i~i~~~~~~~~~~~~DG~~~~~~ 229 (272)
T 2i2c_A 166 SLGGALMHPSI--------------EAMQLTEMAS-INNRVYRT-IGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHR 229 (272)
T ss_dssp HTTCCCCCTTS--------------CEEEEEEESC-CCSSSCCC-CCSCEEEETTCCEEEEESSCCCEEEEETTEEEEEC
T ss_pred cCCCCeeCCCC--------------CceEEeCCCC-ccchhhhc-cCCcEEeCCCCEEEEEEcCCCCEEEEECCCEeecC
Confidence 6666555432 1233332222 11111111 12345555667788864 45688999999853
Q ss_pred -CceEEEEEEcCceEEEEeCC
Q 005250 645 -QQAGCLDITHHGQVFTLRRA 664 (706)
Q Consensus 645 -~~P~~I~I~~~~~~~ml~~~ 664 (706)
..+++|++.++...++.++.
T Consensus 230 ~~~~v~i~~~~~~~~~i~~~~ 250 (272)
T 2i2c_A 230 DVQEIRYEVSAKKIHFARFRS 250 (272)
T ss_dssp SEEEEEEEEEEEEEEEEECSC
T ss_pred CCCEEEEEEcCCEEEEEEeCC
Confidence 25688999998888887643
No 10
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-11 Score=104.22 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=55.0
Q ss_pred hhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 57 KKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 57 ~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
.+.+.++.+...+|.|....|. +|+||.+|.++||| ++ +||++|+.|++.+|++|..++..+|..
T Consensus 11 ga~r~~~~~~~~~H~F~~~~f~--~pt~C~~C~~~lwG---l~--kqG~~C~~C~~~~Hk~C~~~v~~~C~~ 75 (77)
T 2enn_A 11 GAIKQAKVHHVKCHEFTATFFP--QPTFCSVCHEFVWG---LN--KQGYQCRQCNAAIHKKCIDKVIAKCTG 75 (77)
T ss_dssp CCCCCCCCEESSSCEEEEECCS--SCEECSSSCCEECC---TT--CCEEECSSSCCEEESGGGSSCCSCCCC
T ss_pred ccccccccccCCCCccEEEcCC--CCcCccccChhhcc---cc--ccccCcCCCCCcCCHhHHhhCcCCCCC
Confidence 4444555667889999999876 99999999999975 33 678999999999999999999999965
No 11
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=97.62 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=52.4
Q ss_pred cccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccccc
Q 005250 64 NVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQ 131 (706)
Q Consensus 64 ~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~ 131 (706)
.+...+|.|....|. +|+||.+|.++||| ++ +||++|..|++.+|++|..++...|.....
T Consensus 12 ~~~~~~H~F~~~~~~--~pt~C~~C~~~lwG---l~--kqg~~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (83)
T 2yuu_A 12 IHYIKNHEFIATFFG--QPTFCSVCKDFVWG---LN--KQGYKCRQCNAAIHKKCIDKIIGRCTGTAA 72 (83)
T ss_dssp EECGGGCCEEEECCS--SCCCCSSSCCCCCS---SS--CCEEEETTTCCEECTTGGGTCCSCCSSCCC
T ss_pred CcccCCCceEeEeCC--CCcChhhcChhhcc---cc--ccccccCCcCCeeChhhhhhCCCcCCCccc
Confidence 345668999999876 99999999999975 33 678999999999999999999999987654
No 12
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.94 E-value=5.8e-10 Score=90.88 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=47.8
Q ss_pred CCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 67 LSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 67 ~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
..+|.|....+. +|+||.+|.++||| ++ +||++|+.|++.+|++|+.++...|.
T Consensus 10 ~~~H~F~~~~~~--~pt~C~~C~~~l~G---l~--~qg~~C~~C~~~~Hk~C~~~v~~~C~ 63 (65)
T 2enz_A 10 DMPHRFKVYNYK--SPTFCEHCGTLLWG---LA--RQGLKCDACGMNVHHRCQTKVANLCG 63 (65)
T ss_dssp CCCCCEEECCCC--SCCBCSSSCCBCCC---SS--SCSEEESSSCCEECTTTTTTSCSCTT
T ss_pred CCCCccEeEcCC--CCcCchhcChhhee---cC--CcccccCCCCCccCHhHHhhCcCcCC
Confidence 458999999876 99999999999975 33 67799999999999999999999885
No 13
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.90 E-value=4.8e-10 Score=86.36 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=44.3
Q ss_pred CeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccC
Q 005250 70 HTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDC 126 (706)
Q Consensus 70 H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~C 126 (706)
|.|....+. +|+||.+|.++||| ++ +||++|+.|++.+|++|..+++..|
T Consensus 1 H~F~~~~~~--~pt~C~~C~~~l~g---~~--~qg~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYM--SPTFCDHCGSLLWG---LV--KQGLKCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCS--SCCBCTTTCCBCCS---SS--SCEEEETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCC--CCCCcCCCCceeec---cC--CccCEeCCCCCeECHHHhhhcCCCC
Confidence 889998776 99999999999975 33 6789999999999999999998876
No 14
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.88 E-value=8.1e-10 Score=90.30 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=46.4
Q ss_pred CCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 68 SHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 68 ~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
..|.|....+. +|+||.+|.++||| ++ +||++|+.|++.+|++|..++..+|..
T Consensus 12 ~~H~F~~~~~~--~pt~C~~C~~~l~G---l~--~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 12 IQHNFEVWTAT--TPTYCYECEGLLWG---IA--RQGMRCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp -CCCEEEEECS--SCCCCTTTCCCCCS---SC--CEEEEETTTCCEECTTHHHHSCCCC--
T ss_pred CCcccEeeeCC--CCcChhhcChhhcc---cC--cceeEcCCCCCeeCHHHHhhCcCcCCC
Confidence 47999999876 99999999999975 33 677999999999999999999999963
No 15
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=98.85 E-value=4.9e-10 Score=91.32 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=48.4
Q ss_pred CCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 67 LSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 67 ~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
...|.|....+. +|+||.+|.++||| ++ +||++|+.|++.+|++|..++...|..
T Consensus 7 ~~~H~F~~~~~~--~pt~C~~C~~~l~G---l~--~qg~~C~~C~~~~Hk~C~~~v~~~C~~ 61 (65)
T 3uej_A 7 VGSHRFKVYNYM--SPTFCDHCGSLLWG---LV--KQGLKCEDCGMNVHHKCREKVANLCEF 61 (65)
T ss_dssp EEECCEEEECCS--SCCBCTTTCCBCCS---SS--SCEEEETTTCCEECHHHHTTSCSEEEE
T ss_pred eCCceEEeEeCC--CCCcccccChhhhc---cC--ceeeECCCCCCeEchhHhhhCCCcCCC
Confidence 357999998876 99999999999965 43 678999999999999999999999964
No 16
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.6e-10 Score=92.90 Aligned_cols=58 Identities=26% Similarity=0.499 Sum_probs=49.5
Q ss_pred ccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcc-cCccc
Q 005250 65 VPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAK-DCKCV 129 (706)
Q Consensus 65 ~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~-~Ck~~ 129 (706)
.....|.|....|. +|+||.+|.++|||. + +||++|+.|++.+|++|+.++.. +|...
T Consensus 13 ~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl---~--kqG~~C~~C~~~~Hk~C~~~v~~~~C~~~ 71 (74)
T 2db6_A 13 VNDKPHKFKDHFFK--KPKFCDVCARMIVLN---N--KFGLRCKNCKTNIHEHCQSYVEMQRCSGP 71 (74)
T ss_dssp SCSSBCCEEEEECS--SCEECSSSCCEECHH---H--HEEEEESSSCCEECTTTTGGGSSSBCCCC
T ss_pred ccCCCCceEEeeCC--CCcCchhcChhhccc---c--CCccccCCCCCccChhHHhhCCCCcCCCC
Confidence 44668999999876 999999999999763 2 56699999999999999999986 69754
No 17
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=92.58 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred ccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCccc
Q 005250 65 VPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCV 129 (706)
Q Consensus 65 ~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 129 (706)
.+...|.|....|. +|+||.+|.++||| ++ +||++|..|++.+|++|+.++...|...
T Consensus 13 ~~~~~H~F~~~~~~--~pt~C~~C~~~l~G---l~--kqG~~C~~C~~~~Hk~C~~~v~~~C~~~ 70 (85)
T 2eli_A 13 DPRSKHKFKIHTYG--SPTFCDHCGSLLYG---LI--HQGMKCDTCDMNVHKQCVINVPSLCGMD 70 (85)
T ss_dssp CTTTSCCCEEECCS--SCCBCSSSCCBCCC---SS--SCEEECSSSCCEEETTTTTTSCSCCCCC
T ss_pred CCCCCcccEeeeCC--CCcCCcccCccccc---cc--cCCCcCCCcCCccCHhHHhhcCCcCCcc
Confidence 45678999999876 99999999999975 33 6789999999999999999999999653
No 18
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=98.82 E-value=1.7e-09 Score=84.03 Aligned_cols=50 Identities=24% Similarity=0.491 Sum_probs=45.2
Q ss_pred CCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 68 SHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 68 ~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
.+|.|....+. +|+||.+|.++|| || ++|+.|++.+|++|..++...|..
T Consensus 2 ~~H~F~~~~~~--~pt~C~~C~~~l~--qG-------~~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 2 TTHNFARKTFL--KLAFCDICQKFLL--NG-------FRCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCEEECCS--SCEECTTSSSEEC--SE-------EECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCceeEeEeCC--CCcCCCCcccccc--cC-------CEeCCCCCeEChhHHhhCcCcCCC
Confidence 47999999876 8999999999997 55 899999999999999999999954
No 19
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=98.69 E-value=3.5e-09 Score=90.12 Aligned_cols=58 Identities=19% Similarity=0.360 Sum_probs=48.3
Q ss_pred cCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchh---hhcccCcc
Q 005250 66 PLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSE---FTAKDCKC 128 (706)
Q Consensus 66 ~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~---~~~~~Ck~ 128 (706)
...+|.|..+++. +||||.+|.++||| ++++.||++|..|++++|++|.. .+...|+.
T Consensus 21 ~~~~H~F~~~~~~--~PT~Cd~C~~~lWG---l~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~ 81 (84)
T 2row_A 21 CHKGHEFIPTLYH--FPTNCEACMKPLWH---MFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKV 81 (84)
T ss_dssp EETTEEEEEECCS--SCEECSSSSSEECC---SSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCST
T ss_pred EcCCcceEeEcCC--CCcchhhcCHhhhc---cccCCCCCEecCCCCccchhHhCCccccccccCc
Confidence 3568999999876 99999999999975 44222389999999999999999 68888863
No 20
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=98.62 E-value=2.3e-08 Score=83.01 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=45.3
Q ss_pred cCCCCeeEe-cccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 66 PLSHHTWME-DFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 66 ~~~~H~w~~-~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
+..+|.|.. ..+. +|+||.+|.++| . +||++|..|++++|++|..++...|+
T Consensus 20 ~~~~H~F~~~~~~~--~pt~C~~C~~~l-~-------~qG~kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRG--GPGWCDLCGREV-L-------RQALRCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCS--SCCBCTTTSSBC-S-------SCCEECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCC--CCcchhhhhHHH-H-------hCcCccCCCCCeechhhhccCcCCCC
Confidence 456899999 7665 999999999999 3 45599999999999999999999884
No 21
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=98.57 E-value=1.7e-08 Score=80.46 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=44.7
Q ss_pred CCCCeeEe-cccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 67 LSHHTWME-DFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 67 ~~~H~w~~-~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
..+|.|.. ..+. +|+||.+|.++| . +||++|+.|++++|++|..++...|+
T Consensus 8 ~~~H~F~~~~~~~--~pt~C~~C~~~i-~-------kqg~kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 8 GEGHRFVELALRG--GPGWCDLCGREV-L-------RQALRCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CSSCCCEECCCSS--CCEECTTTCSEE-C-------SCCEECTTTSCEECHHHHTTCCCCCC
T ss_pred CCCCcCeeeeccC--CCeEchhcchhh-h-------hCccEeCCCCCeEehhhhhhCcCCCC
Confidence 45899999 8766 999999999999 3 44599999999999999999998884
No 22
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.49 E-value=4.5e-08 Score=112.76 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=61.9
Q ss_pred hhhhhhcHHHHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCc
Q 005250 39 KWQRRTSLNWIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFC 118 (706)
Q Consensus 39 ~~~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C 118 (706)
-....+...|+.++.....+...+ .....+|.|....+. +|++|.+|.++||| ++ .||++|..|++.||++|
T Consensus 489 A~S~eeK~~Wi~~I~~ai~~~~~~-~~~~~~H~F~~~~~~--~~t~C~~C~~~l~g---l~--~qg~~C~~C~~~vHk~C 560 (587)
T 3ky9_A 489 FKTRELKKKWMEQFEMAISNIYPE-NATANGHDFQMFSFE--ETTSCKACQMLLRG---TF--YQGYRCHRCRASAHKEC 560 (587)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHSCT-TTTGGGCCEEEECCS--SCCBCTTTCSBCCS---SS--CCEEEETTTCCEECSGG
T ss_pred eCCHHHHHHHHHHHHHHhhhhccc-cccccCCceeEEeCC--CCcccccccccccc---cc--cCCcCCCCCCCccchhh
Confidence 345556677999996664433322 234568999999776 99999999999975 33 68899999999999999
Q ss_pred hhhhcccCcccccc
Q 005250 119 SEFTAKDCKCVAQA 132 (706)
Q Consensus 119 ~~~~~~~Ck~~~~~ 132 (706)
+..+ ..|+.....
T Consensus 561 ~~~v-~~C~~~~~~ 573 (587)
T 3ky9_A 561 LGRV-PPCGRHGQD 573 (587)
T ss_dssp GGGS-CCC------
T ss_pred hhcC-CCCCCCCcc
Confidence 9999 589876543
No 23
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=75.23 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=46.3
Q ss_pred CCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 68 SHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 68 ~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
..|.|.++.+. +|++|.+|.+.|+ +| +|+++|..|++.+|+.|...+...|..
T Consensus 7 ~~H~F~~kt~~--~~~~C~~Cg~~i~----~g--kq~~kC~dC~~~cH~~C~~~~~~~C~p 59 (61)
T 4b6d_A 7 RLHDFVSKTVI--KPESCVPCGKRIK----FG--KLSLKCRDCRVVSHPECRDRCPLPCIP 59 (61)
T ss_dssp CCCCEEEEECC--SCEECTTTCCEEC----TT--CEEEEESSSSCEECGGGGGGSCSSCCC
T ss_pred cceeEEeeecc--CCcccccccCEEE----Ee--eEeeECCCCCCeEchhHhhcCCCCCCC
Confidence 37999999877 8999999988773 34 677999999999999999999999964
No 24
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.28 E-value=7.1e-07 Score=72.49 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=46.6
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCCCCCCCC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKESGDVCDL 203 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 203 (706)
..+|.|.. .++..+++|++|++.+.+.+. ||++|..|++++|.+|...++.. |.+
T Consensus 10 ~~~H~F~~------~~~~~pt~C~~C~~~l~Gl~~---qg~~C~~C~~~~Hk~C~~~v~~~----C~~ 64 (65)
T 2enz_A 10 DMPHRFKV------YNYKSPTFCEHCGTLLWGLAR---QGLKCDACGMNVHHRCQTKVANL----CGI 64 (65)
T ss_dssp CCCCCEEE------CCCCSCCBCSSSCCBCCCSSS---CSEEESSSCCEECTTTTTTSCSC----TTT
T ss_pred CCCCccEe------EcCCCCcCchhcChhheecCC---cccccCCCCCccCHhHHhhCcCc----CCC
Confidence 47899998 478899999999888876443 67999999999999999998765 754
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.26 E-value=3.4e-07 Score=100.49 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=58.7
Q ss_pred hhhhcHHHHHHHHHhhhhhhccccccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchh
Q 005250 41 QRRTSLNWIKDAARAKKKFWKKLNVPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSE 120 (706)
Q Consensus 41 ~r~~~~~~~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~ 120 (706)
...+...|+.++.....+... ......+|.|....+. +|++|.+|.+.+|| ++ ++|++|..|++++|++|+.
T Consensus 319 s~~ek~~W~~~i~~ai~~~~~-~~~~~~~h~f~~~~~~--~~t~C~~C~~~~~g---~~--~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 319 TRELKKKWMEQFEMAISNIYP-ENATANGHDFQMFSFE--ETTSCKACQMLLRG---TF--YQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHSC-TTTTGGGCCEEEECCS--SCCBCTTTCCBCCS---SS--SCEEEETTTCCEECGGGGG
T ss_pred CHHHHHHHHHHHHHHHhhhhh-ccccCCCCCCccccCC--CCCCCccccchhce---eC--CCCCCCCCCcCccchhhhh
Confidence 344456799999655433221 2233568999998765 99999999999975 33 6789999999999999999
Q ss_pred hhcccCccc
Q 005250 121 FTAKDCKCV 129 (706)
Q Consensus 121 ~~~~~Ck~~ 129 (706)
+++. |...
T Consensus 391 ~~~~-C~~~ 398 (406)
T 2vrw_B 391 RVPP-CGRH 398 (406)
T ss_dssp GSCC-C---
T ss_pred hCCC-CCCC
Confidence 9995 9654
No 26
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.14 E-value=1.6e-06 Score=66.51 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=40.8
Q ss_pred cceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 139 HHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 139 H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
|.|.. .++..+++|++|++.+.+.+. ||++|..|++++|.+|...++..
T Consensus 1 H~F~~------~~~~~pt~C~~C~~~l~g~~~---qg~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T 1ptq_A 1 HRFKV------YNYMSPTFCDHCGSLLWGLVK---QGLKCEDCGMNVHHKCREKVANL 49 (50)
T ss_dssp CCEEE------ECCSSCCBCTTTCCBCCSSSS---CEEEETTTCCEECHHHHTTSCSC
T ss_pred CCCEe------ecCCCCCCcCCCCceeeccCC---ccCEeCCCCCeECHHHhhhcCCC
Confidence 67777 378889999999888765432 67999999999999999988754
No 27
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.04 E-value=2.1e-06 Score=69.87 Aligned_cols=52 Identities=17% Similarity=0.450 Sum_probs=43.0
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..+|.|... ++..+++|++|++.+++.+. ||++|..|++++|.+|...++..
T Consensus 11 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~~---qg~~C~~C~~~~Hk~C~~~v~~~ 62 (66)
T 1y8f_A 11 GIQHNFEVW------TATTPTYCYECEGLLWGIAR---QGMRCTECGVKCHEKCQDLLNAD 62 (66)
T ss_dssp --CCCEEEE------ECSSCCCCTTTCCCCCSSCC---EEEEETTTCCEECTTHHHHSCCC
T ss_pred CCCcccEee------eCCCCcChhhcChhhcccCc---ceeEcCCCCCeeCHHHHhhCcCc
Confidence 478999984 68889999999888876443 67999999999999999998765
No 28
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=4.8e-06 Score=71.25 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=44.0
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..+|.|.. .++..+++|++|++.+++.+. ||++|..|++++|.+|...++..
T Consensus 15 ~~~H~F~~------~~~~~pt~C~~C~~~l~Gl~k---qG~~C~~C~~~~Hk~C~~~v~~~ 66 (85)
T 2eli_A 15 RSKHKFKI------HTYGSPTFCDHCGSLLYGLIH---QGMKCDTCDMNVHKQCVINVPSL 66 (85)
T ss_dssp TTSCCCEE------ECCSSCCBCSSSCCBCCCSSS---CEEECSSSCCEEETTTTTTSCSC
T ss_pred CCCcccEe------eeCCCCcCCcccCcccccccc---CCCcCCCcCCccCHhHHhhcCCc
Confidence 57899998 478899999999888766433 67999999999999999987654
No 29
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=97.94 E-value=3.4e-06 Score=70.84 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=44.0
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
...|.|... ++..+++|++|.+.+++.+. +|++|..|++++|.+|...++..
T Consensus 21 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~k---qG~~C~~C~~~~Hk~C~~~v~~~ 72 (77)
T 2enn_A 21 VKCHEFTAT------FFPQPTFCSVCHEFVWGLNK---QGYQCRQCNAAIHKKCIDKVIAK 72 (77)
T ss_dssp SSSCEEEEE------CCSSCEECSSSCCEECCTTC---CEEECSSSCCEEESGGGSSCCSC
T ss_pred CCCCccEEE------cCCCCcCccccChhhccccc---cccCcCCCCCcCCHhHHhhCcCC
Confidence 468999983 78899999999888776433 67999999999999999988764
No 30
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=97.93 E-value=5.3e-06 Score=67.26 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=42.8
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
.+|.|... ++..+++|++|++.+.+.+. +|++|..|++++|.+|...++..
T Consensus 8 ~~H~F~~~------~~~~pt~C~~C~~~l~Gl~~---qg~~C~~C~~~~Hk~C~~~v~~~ 58 (65)
T 3uej_A 8 GSHRFKVY------NYMSPTFCDHCGSLLWGLVK---QGLKCEDCGMNVHHKCREKVANL 58 (65)
T ss_dssp EECCEEEE------CCSSCCBCTTTCCBCCSSSS---CEEEETTTCCEECHHHHTTSCSE
T ss_pred CCceEEeE------eCCCCCcccccChhhhccCc---eeeECCCCCCeEchhHhhhCCCc
Confidence 57999884 78889999999887765432 67999999999999999988764
No 31
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=6.7e-06 Score=70.01 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=43.7
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
...|.|... ++..+++|++|++.+++.+. +|++|..|++++|.+|...++..
T Consensus 15 ~~~H~F~~~------~~~~pt~C~~C~~~lwGl~k---qg~~C~~C~~~~Hk~C~~~v~~~ 66 (83)
T 2yuu_A 15 IKNHEFIAT------FFGQPTFCSVCKDFVWGLNK---QGYKCRQCNAAIHKKCIDKIIGR 66 (83)
T ss_dssp GGGCCEEEE------CCSSCCCCSSSCCCCCSSSC---CEEEETTTCCEECTTGGGTCCSC
T ss_pred cCCCceEeE------eCCCCcChhhcChhhccccc---cccccCCcCCeeChhhhhhCCCc
Confidence 468999984 78899999999888776432 67999999999999999987654
No 32
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.91 E-value=5.8e-06 Score=70.30 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=44.4
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhh---hcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA---IMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~---~~~~~ 196 (706)
...|.|+. .++..+++|++|++.+++.+.+ .+|++|.-|++++|.+|.. .++..
T Consensus 22 ~~~H~F~~------~~~~~PT~Cd~C~~~lWGl~kq-p~G~~C~~C~~~~HkrC~~k~~~v~~~ 78 (84)
T 2row_A 22 HKGHEFIP------TLYHFPTNCEACMKPLWHMFKP-PPALECRRCHIKCHKDHMDKKEEIIAP 78 (84)
T ss_dssp ETTEEEEE------ECCSSCEECSSSSSEECCSSSC-CCEEEESSSCCEEEHHHHHHTCTTCCC
T ss_pred cCCcceEe------EcCCCCcchhhcCHhhhccccC-CCCCEecCCCCccchhHhCCccccccc
Confidence 57899998 4899999999998888765432 1389999999999999999 56654
No 33
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=97.90 E-value=4.9e-06 Score=64.26 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=39.4
Q ss_pred ccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 138 KHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 138 ~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
.|.|... ++..+++|++|++.+. +|++|..|++++|.+|...++..
T Consensus 3 ~H~F~~~------~~~~pt~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~v~~~ 48 (52)
T 1faq_A 3 THNFARK------TFLKLAFCDICQKFLL-------NGFRCQTCGYKFHEHCSTKVPTM 48 (52)
T ss_dssp CCCCEEE------CCSSCEECTTSSSEEC-------SEEECTTTTCCBCSTTSSSSSSC
T ss_pred CceeEeE------eCCCCcCCCCcccccc-------cCCEeCCCCCeEChhHHhhCcCc
Confidence 6999884 7888999999977554 57999999999999999988765
No 34
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.86 E-value=8.2e-06 Score=62.22 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=38.2
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhccc
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSK 195 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 195 (706)
+++|+|... ++. +++|++|++.+. +|++|..|+.++|.+|...+++
T Consensus 2 ~i~HrF~~~------t~~-~t~C~~C~k~i~-------~G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTK------SWL-SQVCNVCQKSMI-------FGVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEE------CCS-SCCCSSSCCSSC-------CEEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCcc------CCC-CcCccccCceeE-------CcCCCCCCCCccchhhcCcCCC
Confidence 478999984 565 499999988775 3599999999999999997764
No 35
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=97.85 E-value=1.2e-05 Score=66.50 Aligned_cols=50 Identities=16% Similarity=0.367 Sum_probs=41.9
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
...|.|... .++..+++|++|++.+ ..+|++|..|++++|.+|..+++..
T Consensus 21 ~~~H~F~~~-----~~~~~pt~C~~C~~~l------~~qG~kC~~C~~~cHkkC~~~V~~~ 70 (72)
T 2fnf_X 21 GEGHRFVEL-----ALRGGPGWCDLCGREV------LRQALRCANCKFTCHSECRSLIQLD 70 (72)
T ss_dssp CSSCCCEEC-----CCCSSCCBCTTTSSBC------SSCCEECTTSSCEECTGGGGGCCSC
T ss_pred CCCCcccee-----ecCCCCcchhhhhHHH------HhCcCccCCCCCeechhhhccCcCC
Confidence 478999882 2688899999997766 2378999999999999999998865
No 36
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=97.82 E-value=1.1e-05 Score=64.24 Aligned_cols=49 Identities=16% Similarity=0.428 Sum_probs=41.7
Q ss_pred ccccceee-eeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 136 HVKHHWSE-RWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 136 ~~~H~W~~-~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..+|.|.. . ++..+++|++|++.+ + .+|++|..|++++|.+|..+++..
T Consensus 8 ~~~H~F~~~~------~~~~pt~C~~C~~~i---~---kqg~kC~~C~~~cH~kC~~~v~~~ 57 (59)
T 1rfh_A 8 GEGHRFVELA------LRGGPGWCDLCGREV---L---RQALRCANCKFTCHSECRSLIQLD 57 (59)
T ss_dssp CSSCCCEECC------CSSCCEECTTTCSEE---C---SCCEECTTTSCEECHHHHTTCCCC
T ss_pred CCCCcCeeee------ccCCCeEchhcchhh---h---hCccEeCCCCCeEehhhhhhCcCC
Confidence 46899988 5 788899999997766 2 378999999999999999998765
No 37
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=4.3e-06 Score=69.64 Aligned_cols=51 Identities=18% Similarity=0.360 Sum_probs=42.9
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhccc
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSK 195 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~ 195 (706)
...|.|... ++..+++|++|++.+++.+. ||++|..|++++|.+|...++.
T Consensus 15 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~k---qG~~C~~C~~~~Hk~C~~~v~~ 65 (74)
T 2db6_A 15 DKPHKFKDH------FFKKPKFCDVCARMIVLNNK---FGLRCKNCKTNIHEHCQSYVEM 65 (74)
T ss_dssp SSBCCEEEE------ECSSCEECSSSCCEECHHHH---EEEEESSSCCEECTTTTGGGSS
T ss_pred CCCCceEEe------eCCCCcCchhcChhhccccC---CccccCCCCCccChhHHhhCCC
Confidence 478999984 78889999999887765433 6799999999999999998863
No 38
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.73 E-value=1.9e-05 Score=60.21 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=36.9
Q ss_pred CCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 69 HHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 69 ~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
.|.|...++. +++|.+|.+.|| +| ++|..|++.+|.+|...++
T Consensus 4 ~HrF~~~t~~---~t~C~~C~k~i~--~G-------~kC~~Ck~~cH~kC~~~vp 46 (49)
T 1kbe_A 4 THRFSTKSWL---SQVCNVCQKSMI--FG-------VKCKHCRLKCHNKCTKEAP 46 (49)
T ss_dssp CCCEEEECCS---SCCCSSSCCSSC--CE-------EEETTTTEEESSSCTTTSC
T ss_pred CcccCccCCC---CcCccccCceeE--Cc-------CCCCCCCCccchhhcCcCC
Confidence 6999988653 599999999997 44 8999999999999999654
No 39
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=97.71 E-value=2e-05 Score=67.05 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=47.5
Q ss_pred cCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 66 PLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 66 ~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
....|.|+.-.+. .+++|.||.+.+....+ .++++|.-|+++||..|..++...|..
T Consensus 24 ~~~~H~WveGNl~--~~s~C~vC~k~c~s~~~----L~g~rC~WCq~~VH~~C~~~~~~eC~l 80 (84)
T 1r79_A 24 IAMPHQWLEGNLP--VSAKCTVCDKTCGSVLR----LQDWRCLWCKAMVHTSCKESLLTKCSG 80 (84)
T ss_dssp CCBCCCEEESCCC--TTCBCSSSCCBCCCTTT----CCCEEESSSCCEECHHHHHHCCSCBCC
T ss_pred ccceeeEEccCCC--CCCEeCCCCCEeCCccC----CCCCCCcccChhHHHHHHHhccCcCCC
Confidence 4558999998764 67899999999875443 467999999999999999999888854
No 40
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=97.65 E-value=2.2e-05 Score=62.77 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=42.0
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..|.|.+. ++..+++|++|++.++ +|.++++|..|+..+|.+|.+.++.+
T Consensus 7 ~~H~F~~k------t~~~~~~C~~Cg~~i~----~gkq~~kC~dC~~~cH~~C~~~~~~~ 56 (61)
T 4b6d_A 7 RLHDFVSK------TVIKPESCVPCGKRIK----FGKLSLKCRDCRVVSHPECRDRCPLP 56 (61)
T ss_dssp CCCCEEEE------ECCSCEECTTTCCEEC----TTCEEEEESSSSCEECGGGGGGSCSS
T ss_pred cceeEEee------eccCCcccccccCEEE----EeeEeeECCCCCCeEchhHhhcCCCC
Confidence 57999985 4667899999988774 24578999999999999999998876
No 41
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=97.52 E-value=3e-05 Score=86.65 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=48.2
Q ss_pred CCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcc
Q 005250 67 LSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKC 128 (706)
Q Consensus 67 ~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 128 (706)
+..|.|....+. +|++|.+|.++|||.. +||++|..|++.+|++|...+...|..
T Consensus 207 v~~h~f~~~~~~--~pt~C~~C~~~l~g~~-----~qg~~C~~C~~~~Hk~C~~~vp~~C~~ 261 (463)
T 3cxl_A 207 EKIHNFKVHTFR--GPHWCEYCANFMWGLI-----AQGVKCADCGLNVHKQCSKMVPNDCKP 261 (463)
T ss_dssp CBCCCEEEECCS--SCCBCTTTCCBCCSSS-----CCEEEETTTCCEECHHHHTTSCSBCCG
T ss_pred CCCcceEEeecC--CCCcchhhhhhhhhHH-----hcCeeccccCccccccccccccccccc
Confidence 668999998876 8999999999997632 567999999999999999999988954
No 42
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.42 E-value=5.9e-05 Score=88.11 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=46.1
Q ss_pred ccCCCCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCc
Q 005250 65 VPLSHHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCK 127 (706)
Q Consensus 65 ~~~~~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 127 (706)
.+...|.|....+. .|+||.+|.+.|+| +. .||++|..|++.+|.+|...+...|-
T Consensus 98 ~~~~~h~~~~~~~~--~~~~C~~C~~~l~g---~~--~qg~~C~~C~~~~H~~C~~~v~~~C~ 153 (674)
T 3pfq_A 98 DPRSKHKFKIHTYS--SPTFCDHCGSLLYG---LI--HQGMKCDTCMMNVHKRCVMNVPSLCG 153 (674)
T ss_dssp ----CCCCCEECCS--SCCCCSSSCSCCBB---SS--SCEECCSSSCCCBCSSTTSSSCCCSS
T ss_pred cccCCcceeecCCC--CCCCCCccccccch---hh--cCccccccCCcchhhhhhhccCcccc
Confidence 34568999998776 89999999999965 33 57799999999999999999999994
No 43
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00065 Score=73.92 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cEEEEeccCChhHHHHHH----------------------Hh--CC
Q 005250 333 DARPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QVFELSASQGPEVGLELF----------------------SN--FQ 386 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV~dl~~t~~p~~al~l~----------------------~~--~~ 386 (706)
.++.++||+||.. ....+.++++...|... ++ ++... +..+..+. .. ..
T Consensus 40 ~~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~~gi-~V~ve--~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T 3afo_A 40 PLQNVYITKKPWT--PSTREAMVEFITHLHESYPEV-NVIVQ--PDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNR 114 (388)
T ss_dssp CCCEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTC-EEECC--HHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHHHH
T ss_pred CCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCe-EEEEe--CchhhhhhhhccccccccccccccccccchhhcccC
Confidence 3688999999863 34556666666666543 32 22111 11111110 00 13
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHHhhheeecceE
Q 005250 387 YFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEHAAVTMLDRWK 466 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~ 466 (706)
.+.||+.|||||+..++..+...+ .+|.||| ++||.+-|+. +.. +++.+.++.+.++......|-.
T Consensus 115 ~DlVIvlGGDGTlL~aa~~~~~~~--vpPiLGI-N~G~lGFLt~-~~~----------~~~~~al~~il~g~~~~~~r~~ 180 (388)
T 3afo_A 115 TDLLVTLGGDGTILHGVSMFGNTQ--VPPVLAF-ALGTLGFLSP-FDF----------KEHKKVFQEVISSRAKCLHRTR 180 (388)
T ss_dssp CSEEEEEESHHHHHHHHHTTTTSC--CCCEEEE-ECSSCCSSCC-EEG----------GGHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCcHHHHHHHHHhcccC--CCeEEEE-ECCCcccCCc-CCh----------HHHHHHHHHHhcCCceEEEeeE
Confidence 578999999999999998875432 1245666 9999866643 432 3567778887777544433333
Q ss_pred E
Q 005250 467 V 467 (706)
Q Consensus 467 v 467 (706)
+
T Consensus 181 L 181 (388)
T 3afo_A 181 L 181 (388)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=96.24 E-value=0.0026 Score=69.49 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=41.8
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcc
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMS 194 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 194 (706)
...|.|.. ..+..+++|.+|++.+.+.+. +|++|.-|+++||.+|...++
T Consensus 344 ~~~h~f~~------~~~~~~t~C~~C~~~~~g~~~---qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 344 ANGHDFQM------FSFEETTSCKACQMLLRGTFY---QGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp GGGCCEEE------ECCSSCCBCTTTCCBCCSSSS---CEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCcc------ccCCCCCCCccccchhceeCC---CCCCCCCCcCccchhhhhhCC
Confidence 36788876 367889999999988876554 579999999999999999876
No 45
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=95.99 E-value=0.0035 Score=69.81 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=41.5
Q ss_pred cccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcccC
Q 005250 137 VKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKE 196 (706)
Q Consensus 137 ~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~ 196 (706)
..|.|.. +++..+++|++|++.+.+.+. +|++|..|+.++|.+|...++..
T Consensus 208 ~~h~f~~------~~~~~pt~C~~C~~~l~g~~~---qg~~C~~C~~~~Hk~C~~~vp~~ 258 (463)
T 3cxl_A 208 KIHNFKV------HTFRGPHWCEYCANFMWGLIA---QGVKCADCGLNVHKQCSKMVPND 258 (463)
T ss_dssp BCCCEEE------ECCSSCCBCTTTCCBCCSSSC---CEEEETTTCCEECHHHHTTSCSB
T ss_pred CCcceEE------eecCCCCcchhhhhhhhhHHh---cCeeccccCcccccccccccccc
Confidence 5788887 478889999999877655432 67999999999999999877654
No 46
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.82 E-value=0.19 Score=51.99 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=52.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCC
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFES 413 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~ 413 (706)
.++.||.|+..- .+++...|...++ +.+.. .... . .. ..+.||+.|||||+-.++..+.. .
T Consensus 30 mki~iv~~~~~~-------~~~l~~~L~~~g~~v~~~~-~~~~-~---~~--~~DlvIvlGGDGT~L~aa~~~~~----~ 91 (278)
T 1z0s_A 30 MRAAVVYKTDGH-------VKRIEEALKRLEVEVELFN-QPSE-E---LE--NFDFIVSVGGDGTILRILQKLKR----C 91 (278)
T ss_dssp CEEEEEESSSTT-------HHHHHHHHHHTTCEEEEES-SCCG-G---GG--GSSEEEEEECHHHHHHHHTTCSS----C
T ss_pred eEEEEEeCCcHH-------HHHHHHHHHHCCCEEEEcc-cccc-c---cC--CCCEEEEECCCHHHHHHHHHhCC----C
Confidence 358999997544 3445555554443 22322 1111 1 11 45789999999999877765432 2
Q ss_pred CCCEEEeeCCCcchhhhhcccCCCcccCCCCCcHHHHHHHHHH
Q 005250 414 PPPVAVLPLGTGNDMSRVLQWGRGFSMVDGHGGLSTILNDIEH 456 (706)
Q Consensus 414 ~ppvgILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~ 456 (706)
+||-=+.+||-+=|+. .. .+++.+.+.++.+
T Consensus 92 -~PilGIN~G~lGFLt~-~~----------~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 92 -PPIFGINTGRVGLLTH-AS----------PENFEVELKKAVE 122 (278)
T ss_dssp -CCEEEEECSSSCTTCC-BB----------TTBCHHHHHHHHH
T ss_pred -CcEEEECCCCCccccc-cC----------HHHHHHHHHHHHh
Confidence 5665567775554442 11 1356666666654
No 47
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.77 E-value=0.0051 Score=70.54 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=41.9
Q ss_pred ccccceeeeeecCCCCCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhcc
Q 005250 136 HVKHHWSERWVNMDDNAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMS 194 (706)
Q Consensus 136 ~~~H~W~~~~~~~~~n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 194 (706)
...|.|... .+..+++|.+|++.+.+.+. +|++|.-|++.||.+|...++
T Consensus 516 ~~~H~F~~~------~~~~~t~C~~C~~~l~gl~~---qg~~C~~C~~~vHk~C~~~v~ 565 (587)
T 3ky9_A 516 ANGHDFQMF------SFEETTSCKACQMLLRGTFY---QGYRCHRCRASAHKECLGRVP 565 (587)
T ss_dssp GGGCCEEEE------CCSSCCBCTTTCSBCCSSSC---CEEEETTTCCEECSGGGGGSC
T ss_pred ccCCceeEE------eCCCCccccccccccccccc---CCcCCCCCCCccchhhhhcCC
Confidence 367889873 67889999999988876543 679999999999999999874
No 48
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=86.00 E-value=0.41 Score=40.83 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=37.5
Q ss_pred ccccccCC-CCeeEecccCCCCCccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 61 KKLNVPLS-HHTWMEDFSNGEQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 61 ~~~~~~~~-~H~w~~~~~~~~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
.+-+++.- .|....... .|..|+.|.+...+ ..|+|..|++.+|..|+....
T Consensus 28 ~~i~Hp~Hp~H~L~L~~~---~~~~C~~C~~~~~~--------~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 28 KKVKHVLHEEHELELTRV---QVYTCDKCEEEGTI--------WSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp SEECCSTTTTSCEEEECC---SSCCCTTTSCCCCS--------CEEECTTTCCCCCHHHHHCSS
T ss_pred ceecCCCCCCCccEEeeC---CCeEeCCCCCcCCC--------cEEEcCCCCCeEcHHhcCCCC
Confidence 34445554 577777542 36789999987532 339999999999999997644
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.89 E-value=0.48 Score=42.24 Aligned_cols=87 Identities=23% Similarity=0.436 Sum_probs=52.6
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCcccccCC
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAFCFYCDE 163 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~k 163 (706)
+|.+|..--......|..+.-+.|+.|+...|..|+...... +... -.-.|.- +.-..|.+|++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~---~~~~----~~~~W~C---------~~C~~C~~C~~ 66 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNM---TEAV----KTYKWQC---------IECKSCILCGT 66 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHH---HHHH----HHTTCCC---------GGGCCCTTTTC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhh---hhcc----CCCccCc---------cccCccCcccc
Confidence 689997533110111122466899999999999999754210 0000 0113542 33446888876
Q ss_pred CcCcCccCCCCceeecccccccchhhhh
Q 005250 164 PCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 164 ~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
.-... .-+.|..|.+.+|-.|..
T Consensus 67 ~~~~~-----~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 67 SENDD-----QLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp CTTTT-----TEEECSSSCCEEETTTSS
T ss_pred cCCCC-----ceEEcCCCCccccccccC
Confidence 53221 347899999999999975
No 50
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=77.93 E-value=3.5 Score=44.19 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=55.3
Q ss_pred ceEEEEECCeEEEecCceeEEEEec-cCcc-----ccCccccCCCCCCCCCCCccccCCCeEEEEEEeCcccchhhhhcc
Q 005250 541 WQVWLEVDGKGIEIPKDSEGLIVLN-IGSY-----MGGVDLWQNDSEHDDDFSPQSMHDKVLEVVCVCGAWHLGKLQVGL 614 (706)
Q Consensus 541 ~~v~l~~Dg~~i~l~~~~~~i~v~N-i~~~-----gGG~~l~~~~~~~~~~f~~~~~~DG~LeVv~v~~~~~l~~l~~g~ 614 (706)
-++++.+||+.++- -..-+|+|+. ++|- +||--+.|.. ..|-|+-+.. |- + .
T Consensus 231 ~~~~v~idg~~~~~-~~aDGlIVSTPTGSTAYslSAGGPIv~P~~--------------~~i~ltPI~P--hs--L---s 288 (365)
T 3pfn_A 231 SNVDVYLDGHLITT-VQGDGVIVSTPTGSTAYAAAAGASMIHPNV--------------PAIMITPICP--HS--L---S 288 (365)
T ss_dssp CCEEEEETTEEEEE-ECSSEEEEECGGGGGTHHHHTTCCEECTTS--------------CCEEEEEESC--SS--T---T
T ss_pred EEEEEEECCEEEEE-EecCeEEEeCCccHHHHHHhCCCCccCCCC--------------CeEEEEeccC--Cc--c---C
Confidence 36788999998762 2567888875 2321 3333333321 2233333322 21 1 1
Q ss_pred cCceEEEEecEEEEEeC----CCccEEecCCCCC----CceEEEEEEcCceEEEEeC
Q 005250 615 SQARRLAQGKVIRIHSS----SPFPVQIDGEPFI----QQAGCLDITHHGQVFTLRR 663 (706)
Q Consensus 615 ~~~~rl~q~~~i~I~~~----~~~pvqvDGE~~~----~~P~~I~I~~~~~~~ml~~ 663 (706)
.+++-+....+|+|+.. ....+.+||.... ...++|+..+....++..+
T Consensus 289 ~RPiVlp~~~~I~i~v~~~~~~~~~vs~DG~~~~~l~~gd~V~I~~s~~~~~li~~~ 345 (365)
T 3pfn_A 289 FRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVR 345 (365)
T ss_dssp CCCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECSSCEEEECSS
T ss_pred CCceEECCCCEEEEEEccCCCCcEEEEEcCCeeeecCCCCEEEEEECCCceEEEEeC
Confidence 23444555556777653 2367889997642 2457777776666665443
No 51
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=76.27 E-value=1.2 Score=37.92 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=25.9
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhhh
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
+-.|+.|++...+. -|+|.-|...+|..|...
T Consensus 47 ~~~C~~C~~~~~~~------~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIW------SYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSC------EEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCc------EEEcCCCCCeEcHHhcCC
Confidence 45899999985432 389999999999999753
No 52
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.54 E-value=1.8 Score=38.29 Aligned_cols=87 Identities=21% Similarity=0.416 Sum_probs=52.4
Q ss_pred ccccccccccc-cccccCCCCCceeccccCcccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCccccc
Q 005250 83 STCCVCLTSLV-LPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAFCFYC 161 (706)
Q Consensus 83 ~~C~vC~~~i~-g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~C 161 (706)
.+|.+|...=. ...| ...+-+.|+.|+...|..|+...... ... ...-.|.= +.-..|.+|
T Consensus 6 ~~C~~C~~~~~~~~~g--~~~~Ll~C~~C~~~~H~~Cl~~~~~~---~~~----~~~~~W~C---------~~C~~C~vC 67 (112)
T 3v43_A 6 PICSFCLGTKEQNREK--KPEELISCADCGNSGHPSCLKFSPEL---TVR----VKALRWQC---------IECKTCSSC 67 (112)
T ss_dssp SSBTTTCCCTTCCTTS--CCCCCEECTTTCCEECHHHHTCCHHH---HHH----HHTSCCCC---------TTTCCBTTT
T ss_pred ccccccCCchhhCcCC--CchhceEhhhcCCCCCCchhcCCHHH---HHH----hhcccccc---------ccCCccccc
Confidence 57999975321 1112 12466899999999999998643211 000 01124542 334578888
Q ss_pred CCCcCcCccCCCCceeecccccccchhhhh
Q 005250 162 DEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 162 ~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
++.-.. ..+-+.|..|.+.+|-.|..
T Consensus 68 ~~~~~~----~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 68 RDQGKN----ADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp CCCCCT----TCCCEECTTTCCEECGGGCS
T ss_pred cCcCCC----ccceEEcCCCCCeeecccCC
Confidence 654110 01347899999999999964
No 53
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.97 E-value=5.9 Score=34.69 Aligned_cols=80 Identities=19% Similarity=0.448 Sum_probs=53.2
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCcccc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAFCFY 160 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~ 160 (706)
.-.+|.+|.+.=. + .+-+.|+.|....|..|+...... + ..-.|.= +.-.+|.+
T Consensus 6 ~~~~C~~C~~~g~----~---~~ll~C~~C~~~~H~~Cl~~~~~~---~-------~~~~W~C---------~~C~~C~~ 59 (111)
T 2ysm_A 6 SGANCAVCDSPGD----L---LDQFFCTTCGQHYHGMCLDIAVTP---L-------KRAGWQC---------PECKVCQN 59 (111)
T ss_dssp CCSCBTTTCCCCC----T---TTSEECSSSCCEECTTTTTCCCCT---T-------TSTTCCC---------TTTCCCTT
T ss_pred CCCCCcCCCCCCC----C---cCCeECCCCCCCcChHHhCCcccc---c-------cccCccC---------CcCCcccc
Confidence 4468999986411 0 122799999999999999864321 1 1234542 33457888
Q ss_pred cCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 161 CDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 161 C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
|++.-.. ..-+.|.-|.+.+|..|..
T Consensus 60 C~~~~~~-----~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 60 CKQSGED-----SKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp TCCCSCC-----TTEEECSSSCCEEEGGGSS
T ss_pred cCccCCC-----CCeeECCCCCcHHhHHhcC
Confidence 8765321 1347999999999999975
No 54
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=67.38 E-value=3.1 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=25.0
Q ss_pred cccccCCCcCcCccCCCCceeecccccccchhh
Q 005250 157 FCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKC 189 (706)
Q Consensus 157 ~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C 189 (706)
.|..|++.+...-+.-+++.+|..|+..|-.+-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 689999888765554568899999998775543
No 55
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.20 E-value=2.2 Score=34.96 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=26.3
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
.-..|.+|.+.+. + +.+|..|+...|..|+.+
T Consensus 14 ~i~~C~IC~~~i~--~-------g~~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 14 AVKICNICHSLLI--Q-------GQSCETCGIRMHLPCVAK 45 (74)
T ss_dssp SSCBCSSSCCBCS--S-------SEECSSSCCEECHHHHHH
T ss_pred CCCcCcchhhHcc--c-------CCccCCCCchhhHHHHHH
Confidence 4467999999884 2 279999999999999875
No 56
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.17 E-value=2.9 Score=42.05 Aligned_cols=33 Identities=27% Similarity=0.721 Sum_probs=27.4
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFT 122 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~ 122 (706)
.-..|.+|.+.+. +| .+|..|+...|..|..+.
T Consensus 179 ~i~~C~iC~~iv~--~g-------~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLI--QG-------QSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCS--SC-------EECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHh--CC-------cccCccChHHHHHHHHHH
Confidence 4578999999874 33 799999999999999764
No 57
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=59.35 E-value=7 Score=34.36 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=47.8
Q ss_pred CCccccccccccccccccCCCCCceecc--ccCcccCCCchhhhcccCcccccccccccccceeeeeecCCCCCCCCCcc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCA--VCGVAAHFFCSEFTAKDCKCVAQACFSHVKHHWSERWVNMDDNAELSAFC 158 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~--~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C 158 (706)
...||.+|.+. ++-+.|+ .|....|..|+.....+ .-.|.= + .-.|
T Consensus 14 ~~~~C~~C~~~----------G~ll~CD~~~Cp~~fH~~Cl~L~~~P------------~g~W~C---------p-~c~C 61 (107)
T 4gne_A 14 HEDYCFQCGDG----------GELVMCDKKDCPKAYHLLCLNLTQPP------------YGKWEC---------P-WHQC 61 (107)
T ss_dssp SCSSCTTTCCC----------SEEEECCSTTCCCEECTGGGTCSSCC------------SSCCCC---------G-GGBC
T ss_pred CCCCCCcCCCC----------CcEeEECCCCCCcccccccCcCCcCC------------CCCEEC---------C-CCCC
Confidence 34689999841 3447999 89999999998721110 113542 1 2257
Q ss_pred cccCCCcCcCccCCCCceeecccccccchhhhhh
Q 005250 159 FYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 159 ~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
..|++. ..++|.+|-..+|.+|..-
T Consensus 62 ~~C~k~---------~~~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 62 DECSSA---------AVSFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp TTTCSB---------CCEECSSSSCEECTTTCTT
T ss_pred CcCCCC---------CCcCcCCCCcchhhhccCC
Confidence 777553 2389999999999999754
No 58
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=58.71 E-value=6 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=27.1
Q ss_pred CCCCCcccccCCCcCcCccCCCCceeecccccccchhhhhhc
Q 005250 152 AELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIM 193 (706)
Q Consensus 152 ~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~ 193 (706)
....-.|.+|...-.+. -+.|.-|.+.+|..|...+
T Consensus 12 ~~~D~~C~VC~~~t~~~------l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAES------LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSC------CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccc------eeccccccccccHhhcccc
Confidence 34466899996543332 2689999999999999875
No 59
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=54.59 E-value=26 Score=37.09 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=49.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE--EEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV--FELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV--~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+.. ..+.+++...|....+ |+-..... -+++.+.+++...+.||++|| |++..+.-.+.-
T Consensus 37 ~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK~iA~ 110 (358)
T 3jzd_A 37 KRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGKAIAL 110 (358)
T ss_dssp SCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHHHHHh
Confidence 57788876642 2356677777765543 32111111 134556666667789999999 888888777654
Q ss_pred cCCCCCCCEEEeeC
Q 005250 409 RNFESPPPVAVLPL 422 (706)
Q Consensus 409 ~~~~~~ppvgILPl 422 (706)
. ..+|+..+|.
T Consensus 111 ~---~~~p~i~IPT 121 (358)
T 3jzd_A 111 E---TGMPIVAIPT 121 (358)
T ss_dssp H---HCCCEEEEEC
T ss_pred c---cCCCEEEEeC
Confidence 2 3567777776
No 60
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=54.15 E-value=4.3 Score=34.01 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
-.|.||..+- .. .-+.|.+|+.+.|..|..+.-
T Consensus 16 ~~C~VC~~~t--~~------~l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 16 EMCDVCEVWT--AE------SLFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCTTTCCCC--SS------CCSSCSSSSSCCCHHHHHHHT
T ss_pred cccCcccccc--cc------ceeccccccccccHhhccccc
Confidence 3699998543 22 227999999999999998853
No 61
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=53.67 E-value=4.5 Score=33.41 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHh
Q 005250 332 QDARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSN 384 (706)
Q Consensus 332 ~~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~ 384 (706)
...+|+.||+|..|-+ -...|+..-...+| ||+.++..|++..+..++
T Consensus 49 dngkplvvfvngasqn-----dvnefqneakkegvsydvlkstdpeeltqrvre 97 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQN-----DVNEFQNEAKKEGVSYDVLKSTDPEELTQRVRE 97 (112)
T ss_dssp TCCSCEEEEECSCCHH-----HHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccc-----cHHHHHHHHHhcCcchhhhccCCHHHHHHHHHH
Confidence 4579999999965432 23455555555566 998888889887665554
No 62
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.82 E-value=9.1 Score=30.51 Aligned_cols=33 Identities=27% Similarity=0.594 Sum_probs=25.1
Q ss_pred CCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 151 NAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 151 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
+......|.+|++. + .-+.|.-|.+.+|-.|..
T Consensus 8 ~~~~~~~C~vC~~~--~------~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 8 NLAPGARCGVCGDG--T------DVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp CCCTTCCCTTTSCC--T------TCEECSSSCCEECHHHHC
T ss_pred CCCCCCCcCCCCCC--C------eEEECCCCCCceecccCC
Confidence 34456789999762 2 237899999999999975
No 63
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=50.41 E-value=13 Score=39.83 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCC--------CcEE--EEeccC-Ch-----hHHHHHHHhCC--C---CeEEE
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNP--------AQVF--ELSASQ-GP-----EVGLELFSNFQ--Y---FRVLV 392 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp--------~qV~--dl~~t~-~p-----~~al~l~~~~~--~---~~Ilv 392 (706)
.++++||.++.... .+.+++...|.. .+++ .+...+ .| +.+.+.+++.. . +.||+
T Consensus 36 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIa 111 (393)
T 1sg6_A 36 STTYVLVTDTNIGS----IYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIA 111 (393)
T ss_dssp CSEEEEEEEHHHHH----HHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEE
T ss_pred CCeEEEEECCcHHH----HHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEE
Confidence 36888998864332 234455554432 3442 332100 12 33455566555 4 67888
Q ss_pred EcCchhHHHHHHHHHhcCCCCCCCEEEeeC--CCcchhh
Q 005250 393 CGGDGTVAWVLNAIEKRNFESPPPVAVLPL--GTGNDMS 429 (706)
Q Consensus 393 ~GGDGTV~~VLn~L~~~~~~~~ppvgILPl--GTGNDlA 429 (706)
.|| |++..+.-.+... +.+.+|+..+|. ||+.|-+
T Consensus 112 lGG-Gsv~D~ak~~Aa~-~~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 112 LGG-GVIGDLTGFVAST-YMRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EES-HHHHHHHHHHHHH-GGGCCEEEEEECSHHHHHTTT
T ss_pred ECC-cHHHHHHHHHHHH-hcCCCCEEEECCchhhhhhcC
Confidence 887 7888777665421 124689999999 9999974
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.48 E-value=13 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=29.4
Q ss_pred CcccccCCCcCcCccCCCCceeecccccccchhhhhhcccCC-CCCCCC
Q 005250 156 AFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMSKES-GDVCDL 203 (706)
Q Consensus 156 ~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~~~~-~~~Cdl 203 (706)
..|.+|...+. ++.+|.-|...+|..|..+-.... ...|++
T Consensus 16 ~~C~IC~~~i~-------~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~ 57 (74)
T 2ct0_A 16 KICNICHSLLI-------QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH 57 (74)
T ss_dssp CBCSSSCCBCS-------SSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred CcCcchhhHcc-------cCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence 58999976553 468999999999999997544321 145743
No 65
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=49.05 E-value=37 Score=35.82 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=50.3
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE--EEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV--FELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV--~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+.. ..+.+++...|+...+ |+-..... -+.+.+.+++...+.||++|| |++..+.-.+.-
T Consensus 35 ~r~liVtd~~~-----~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~ 108 (353)
T 3hl0_A 35 SRALVLSTPQQ-----KGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGKAIAL 108 (353)
T ss_dssp CCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEecCch-----hhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHh
Confidence 57778876642 2356677777776443 32211111 234556677767789999999 888888777654
Q ss_pred cCCCCCCCEEEeeC
Q 005250 409 RNFESPPPVAVLPL 422 (706)
Q Consensus 409 ~~~~~~ppvgILPl 422 (706)
. ..+|+..+|.
T Consensus 109 ~---~~~p~i~IPT 119 (353)
T 3hl0_A 109 R---TDAAQIVIPT 119 (353)
T ss_dssp H---HCCEEEEEEC
T ss_pred c---cCCCEEEEeC
Confidence 2 3578888886
No 66
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=48.45 E-value=35 Score=36.19 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR 409 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~ 409 (706)
.++++||..+.. ..+.+++...|....+|+-..... -+.+.+.+++...+.||++|| |++..+.-.+.-.
T Consensus 37 ~~rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~~ 110 (364)
T 3iv7_A 37 SAKVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKAIAMT 110 (364)
T ss_dssp CSSEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 357778876642 235667777777544554322111 234556677777789999999 8888887766542
Q ss_pred CCCCCCCEEEeeC
Q 005250 410 NFESPPPVAVLPL 422 (706)
Q Consensus 410 ~~~~~ppvgILPl 422 (706)
..+|+..+|.
T Consensus 111 ---~~~P~i~IPT 120 (364)
T 3iv7_A 111 ---TALPIVAIPT 120 (364)
T ss_dssp ---HCCCEEEEEC
T ss_pred ---cCCCEEEEcC
Confidence 3578888887
No 67
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=47.61 E-value=29 Score=37.30 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=52.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcEEEEecc-CCh-----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQVFELSAS-QGP-----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV~dl~~t-~~p-----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+.+-.. ..+.+++...|...+++.+... ..| ..+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHH
Confidence 67888876543211 1156667777763333322211 112 23556666667788999998 777777666543
Q ss_pred cC------------------CCCCCCEEEeeC--CCcchh
Q 005250 409 RN------------------FESPPPVAVLPL--GTGNDM 428 (706)
Q Consensus 409 ~~------------------~~~~ppvgILPl--GTGNDl 428 (706)
.- ..+.+|+..+|. |||-..
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSev 167 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSES 167 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGG
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHh
Confidence 21 014578999997 555443
No 68
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=46.48 E-value=1e+02 Score=32.56 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=49.1
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCC--Cc--EEEEeccC-Ch---hHHHHHHHhCCCCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNP--AQ--VFELSASQ-GP---EVGLELFSNFQYFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp--~q--V~dl~~t~-~p---~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L 406 (706)
++++||..+.+-...| +.+++...|.. .. +|+-.... .. +.+.+.+++...+.||+.|| |++..+.-.+
T Consensus 41 ~~~liVtd~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~AK~i 117 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFAKAV 117 (371)
T ss_dssp SEEEEEEESSGGGTSS--HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECchHHhhcc--HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 6888998875533222 34444444432 22 34322111 11 23455566556788998988 7777777665
Q ss_pred HhcCCC---------------CCCCEEEeeCC
Q 005250 407 EKRNFE---------------SPPPVAVLPLG 423 (706)
Q Consensus 407 ~~~~~~---------------~~ppvgILPlG 423 (706)
.-.-.+ +.+|+..+|.=
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 118 AVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp HHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 443111 46789999964
No 69
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.41 E-value=13 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=25.5
Q ss_pred CCCCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 151 NAELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 151 n~~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
+-....+|.+|++. + .-+.|..|.+.+|-.|..
T Consensus 5 ~~~~~~~C~vC~~~--g------~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 5 SSGHEDFCSVCRKS--G------QLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCSSCCSCSSSCCS--S------CCEECSSSSCEECSSSSS
T ss_pred cCCCCCCCccCCCC--C------eEEEcCCCCcceECccCC
Confidence 34456789999874 2 227899999999999975
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=43.09 E-value=14 Score=36.95 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.2
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhhhcc
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAIMS 194 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~~~ 194 (706)
-..|..|.+.+. +|.+|.-|...+|..|.....
T Consensus 180 i~~C~iC~~iv~-------~g~~C~~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCETCGIRMHLPCVAKYF 212 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECSSSCCEECHHHHHHHT
T ss_pred CCcCcchhhHHh-------CCcccCccChHHHHHHHHHHH
Confidence 357999966543 469999999999999997653
No 71
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.59 E-value=17 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=23.2
Q ss_pred CcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 156 AFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 156 ~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
+.|.+|++.-... .-+.|..|.+.+|-.|..
T Consensus 1 a~C~vC~~~~~~~-----~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDD-----KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCS-----CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCCC-----CEEECCCCChhhCcccCC
Confidence 4699997753211 237899999999999985
No 72
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=37.38 E-value=18 Score=28.29 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 153 ELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 153 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
.....|.+|++.-... ...-+.|..|.+.+|-.|..
T Consensus 4 ~~~~~C~vC~~~~~~~---~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA---PNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBT---TBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCC---CCCEEECCCCChHHHhhhCC
Confidence 3467999998753210 01337899999999999964
No 73
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=37.13 E-value=37 Score=36.35 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=49.1
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCC-Cc-EEEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNP-AQ-VFELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp-~q-V~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+..-. .+.+++...|.. .. +|+....+.+ +.+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 53 ~r~liVtd~~~~~----~~~~~v~~~L~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~iA~ 127 (387)
T 3uhj_A 53 KRALVLIDRVLFD----ALSERIGKSCGDSLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIVAI 127 (387)
T ss_dssp SEEEEEECTTTHH----HHHHHC------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHHHH
T ss_pred CEEEEEECchHHH----HHHHHHHHHHHcCCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 6788888765432 356667777765 22 2433221111 23455566667788999999 888888877754
Q ss_pred cCCCCCCCEEEeeCCCcch
Q 005250 409 RNFESPPPVAVLPLGTGND 427 (706)
Q Consensus 409 ~~~~~~ppvgILPlGTGND 427 (706)
. ..+|+..+|.=.|.|
T Consensus 128 ~---~~~p~i~IPTTagtg 143 (387)
T 3uhj_A 128 D---TGARIVIAPTIASTD 143 (387)
T ss_dssp H---TTCEEEECCSSCCCS
T ss_pred h---cCCCEEEecCcccCC
Confidence 3 368899999843333
No 74
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=36.86 E-value=75 Score=30.06 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCC---C-CeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQ---Y-FRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~---~-~~Ilv~GGDGTV~~VLn~ 405 (706)
|+|...|+= |+..-..+.++....|+..++ ||+.. ...|+...++.+++. . ..|.++||.+-+.-|+.+
T Consensus 10 ~~~~V~Iim---GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 86 (170)
T 1xmp_A 10 MKSLVGVIM---GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA 86 (170)
T ss_dssp -CCSEEEEE---SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHT
T ss_pred CCCcEEEEE---CcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 567666663 444334566666666666665 66543 456888888887653 2 346689999999999988
Q ss_pred HHhcCCCCCCCEEEeeCCCc
Q 005250 406 IEKRNFESPPPVAVLPLGTG 425 (706)
Q Consensus 406 L~~~~~~~~ppvgILPlGTG 425 (706)
+.. .|.||+ |.-++
T Consensus 87 ~t~-----~PVIgV-P~~~~ 100 (170)
T 1xmp_A 87 KTN-----LPVIGV-PVQSK 100 (170)
T ss_dssp TCC-----SCEEEE-EECCT
T ss_pred ccC-----CCEEEe-eCCCC
Confidence 752 455555 44343
No 75
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.42 E-value=16 Score=30.72 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=25.3
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
.+|.+|...-... ..+.+.|+.|...+|..|+.-
T Consensus 17 ~~C~vC~~~~~~~-----~~~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 17 LACVVCRQMTVAS-----GNQLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp CSCSSSCCCCCCT-----TCCEEECSSSCCEEETTTSSS
T ss_pred CcCCCCCCCCCCC-----CCceEECCCCCCeEcCccCCC
Confidence 5899998753211 134589999999999999864
No 76
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=35.22 E-value=72 Score=29.80 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCCcE-EEEe---ccCChhHHHHHHHhCCCC-eEEEEcCchhHHHHHHHHHhcCCCCCCCEEEee
Q 005250 352 YLRRRLNMLLNPAQV-FELS---ASQGPEVGLELFSNFQYF-RVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLP 421 (706)
Q Consensus 352 ~l~~~~~~lLnp~qV-~dl~---~t~~p~~al~l~~~~~~~-~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILP 421 (706)
.+.++....|+..++ ||+. ....|+...++.++.... .|.++||.|-+.-|+.++.. .|.||+=+
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~-----~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTT-----KPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCS-----SCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccC-----CCEEEecC
Confidence 455566666665555 6654 346688888888876444 46689999999999998753 45555544
No 77
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=34.97 E-value=56 Score=34.13 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=39.3
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
.+.+.+.+++..-+.+++.|||||..-+ +.|.+. ..++--+|-=--||+.-
T Consensus 83 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~----~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 83 RAVAIENLKKRGIDALVVIGGDGSYMGA-MRLTEM----GFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT----TCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHcCCCEEEEECCCchHHHH-HHHHhh----CCCEEEEeccccCCCCC
Confidence 3556666777777889999999998776 455553 57888899999999973
No 78
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=34.94 E-value=45 Score=36.92 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=38.7
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHH---HHHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVL---NAIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VL---n~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
.+.+.+.+++..-+.++++|||||..-+. +.+.+.. ...+|.-||-==-||+.
T Consensus 178 ~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g--~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRG--VDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHT--CCCEEEEEECCTTSSCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhC--CCceEEeccccccCCCC
Confidence 34566667777778999999999988543 2222333 35789999999999996
No 79
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=34.73 E-value=1.5e+02 Score=27.95 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCC--C-C-eEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQ--Y-F-RVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~--~-~-~Ilv~GGDGTV~~VLn~ 405 (706)
|+|...|+ .|+..-..+.++....|+..++ ||+.. ...|+...++++++. . . .|.++||.+-+.-|+.+
T Consensus 4 m~p~V~Ii---mgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~ 80 (166)
T 3oow_A 4 MSVQVGVI---MGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAA 80 (166)
T ss_dssp -CEEEEEE---ESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHH
T ss_pred CCCeEEEE---ECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHh
Confidence 45544444 3444334566676677776665 66543 456888888887762 2 2 36679999999999998
Q ss_pred HHhcCCCCCCCEEEeeCCCc
Q 005250 406 IEKRNFESPPPVAVLPLGTG 425 (706)
Q Consensus 406 L~~~~~~~~ppvgILPlGTG 425 (706)
+.. .|.||+ |.-++
T Consensus 81 ~t~-----~PVIgV-P~~~~ 94 (166)
T 3oow_A 81 KTT-----LPVLGV-PVKSS 94 (166)
T ss_dssp TCS-----SCEEEE-ECCCT
T ss_pred ccC-----CCEEEe-ecCcC
Confidence 753 344554 55444
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.39 E-value=24 Score=27.39 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFT 122 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~ 122 (706)
.++||.+|...-.. . ..-.+|+.|..=.|..|+...
T Consensus 5 e~~~C~~C~~~~~~-~-----~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 5 SSGQCGACGESYAA-D-----EFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp SCCCCSSSCCCCCS-S-----SCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCCccCC-C-----CCEEEccCCCCCCCccccCcC
Confidence 57899999865421 1 122699999999999998764
No 81
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=32.14 E-value=57 Score=34.08 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=39.6
Q ss_pred ChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 374 GPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 374 ~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
..+.+.+.+++..-+.++++|||||..-+. .|.+. ..++--+|-=--||+.-
T Consensus 81 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~----~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 81 GQLAGIEQLKKHGIDAVVVIGGDGSYHGAL-QLTRH----GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHT----TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHH-HHHHh----CCCEEEEeecccCCCCC
Confidence 345566667777778899999999987664 45553 47888899999999873
No 82
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=31.56 E-value=1.1e+02 Score=28.52 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCC---CC--eEEEEcCchhHHHHHHHHHhcCCCCCCC
Q 005250 346 GGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQ---YF--RVLVCGGDGTVAWVLNAIEKRNFESPPP 416 (706)
Q Consensus 346 G~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~---~~--~Ilv~GGDGTV~~VLn~L~~~~~~~~pp 416 (706)
|+..-..+.++....|+..++ ||+.. ...|+...++.+++. .. .|.++||.+-+.-|+.++.. .|.
T Consensus 10 gs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~-----~PV 84 (159)
T 3rg8_A 10 GSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVK-----GAT 84 (159)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSS-----SCE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccC-----CCE
Confidence 443334466666666766665 66543 456888888776542 22 36679999999999999853 355
Q ss_pred EEEeeC
Q 005250 417 VAVLPL 422 (706)
Q Consensus 417 vgILPl 422 (706)
||+=+.
T Consensus 85 IgVP~~ 90 (159)
T 3rg8_A 85 IACPPP 90 (159)
T ss_dssp EECCCC
T ss_pred EEeeCC
Confidence 555333
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=31.22 E-value=23 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 154 LSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 154 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
...+|.+|++. + .-+.|..|.+.+|-.|..
T Consensus 10 ~~~~C~vC~~~--g------~ll~CD~C~~~fH~~Cl~ 39 (61)
T 2l5u_A 10 HQDYCEVCQQG--G------EIILCDTCPRAYHMVCLD 39 (61)
T ss_dssp CCSSCTTTSCC--S------SEEECSSSSCEEEHHHHC
T ss_pred CCCCCccCCCC--C------cEEECCCCChhhhhhccC
Confidence 35689999873 2 237899999999999976
No 84
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.00 E-value=23 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=25.7
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.+|.+|...-... ...-+.|+.|...+|..|+.-
T Consensus 6 ~~~C~vC~~~~~~~-----~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEA-----PNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBT-----TBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCC-----CCCEEECCCCChHHHhhhCCC
Confidence 35899998642211 134589999999999999874
No 85
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=30.82 E-value=1.2e+02 Score=28.84 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred cCCCCCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEe---ccCChhHHHHHHHhCC--C-C-eEEEEcCchhHH
Q 005250 329 DVPQDARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELS---ASQGPEVGLELFSNFQ--Y-F-RVLVCGGDGTVA 400 (706)
Q Consensus 329 ~~p~~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~---~t~~p~~al~l~~~~~--~-~-~Ilv~GGDGTV~ 400 (706)
|-+..|+|+.-|+= |+..--.+.+.....|...+| ||+. ..+.|+...++++++. . . .|.++||.+-+-
T Consensus 16 p~~~~mkp~V~Iim---GS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp 92 (181)
T 4b4k_A 16 PRGSHMKSLVGVIM---GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP 92 (181)
T ss_dssp ------CCSEEEEE---SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH
T ss_pred cCCCCCCccEEEEE---CCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch
Confidence 44455777654442 443334567777777777666 6654 3467888888888762 2 2 356799999999
Q ss_pred HHHHHHHhcCCCCCCCEEEee
Q 005250 401 WVLNAIEKRNFESPPPVAVLP 421 (706)
Q Consensus 401 ~VLn~L~~~~~~~~ppvgILP 421 (706)
-|+.++. ..|.|||=+
T Consensus 93 GvvAa~T-----~~PVIGVPv 108 (181)
T 4b4k_A 93 GMVAAKT-----NLPVIGVPV 108 (181)
T ss_dssp HHHHTTC-----CSCEEEEEC
T ss_pred hhHHhcC-----CCCEEEEec
Confidence 9998764 245555544
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.37 E-value=31 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 153 ELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 153 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
....+|.+|++.=.. .. -.-+-|-.|.+.+|-.|..
T Consensus 14 ~~~~~C~vC~~~~s~--~~-~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ--NS-NVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCC--SS-SCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCC--CC-CCEEECCCCCCccccccCC
Confidence 446799999774200 00 1237899999999999975
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.34 E-value=25 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=23.9
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 9 ~~~C~vC~~~----------g~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKDG----------GELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCCC----------SSCBCCSSSCCCBCSSSSSS
T ss_pred CCcCCCCCCC----------CCEEEcCCCCHHHcccccCC
Confidence 4589999852 23379999999999999874
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.88 E-value=29 Score=26.71 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=23.3
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
..+|.+|++. +. -+.|..|.+.+|-.|..
T Consensus 5 ~~~C~vC~~~--g~------ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 5 EDFCSVCRKS--GQ------LLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CSSCTTTCCC--SS------CEECSSSSCEECGGGSS
T ss_pred CCCCcCCCCC--Cc------EEEcCCCCcCEECCcCC
Confidence 5689999873 22 27899999999999975
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.72 E-value=23 Score=28.53 Aligned_cols=36 Identities=19% Similarity=0.520 Sum_probs=26.5
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
.-.+|.+|.+.=.. ....-+.|+.|...+|..|...
T Consensus 15 ~~~~C~vC~~~~s~-----~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 15 EDAVCSICMDGESQ-----NSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp SSCSCSSSCCCCCC-----SSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCC-----CCCCEEECCCCCCccccccCCC
Confidence 45789999864211 1134589999999999999874
No 90
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=29.02 E-value=81 Score=33.28 Aligned_cols=83 Identities=8% Similarity=0.032 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC-cE--EEEecc---CCh---hHHHHHHHhCC---CCeEEEEcCchhHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA-QV--FELSAS---QGP---EVGLELFSNFQ---YFRVLVCGGDGTVAW 401 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~-qV--~dl~~t---~~p---~~al~l~~~~~---~~~Ilv~GGDGTV~~ 401 (706)
.++++||.++.... ...+++...|... ++ +.+... ... ..+.+.+++.. .+.||+.|| |++..
T Consensus 34 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv~D 108 (368)
T 2gru_A 34 FDQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLTGN 108 (368)
T ss_dssp CSEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHHHH
Confidence 36899999876543 2566666666543 33 222211 111 22334445544 467888887 88888
Q ss_pred HHHHHHhcCCCCCCCEEEeeC
Q 005250 402 VLNAIEKRNFESPPPVAVLPL 422 (706)
Q Consensus 402 VLn~L~~~~~~~~ppvgILPl 422 (706)
+.-.+... +.+.+|+..+|.
T Consensus 109 ~ak~~Aa~-~~rgip~i~IPT 128 (368)
T 2gru_A 109 VAGVAAGM-MFRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHHH-hcCCCCEEEECC
Confidence 87666532 225689999998
No 91
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=28.37 E-value=1.8e+02 Score=30.63 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=47.3
Q ss_pred CcEEEEEcCCcCCCC-hHHHHHHHHHhhCCC--cEEEEec-cCCh-----hHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 335 RPLLVFINAKSGGQL-GHYLRRRLNMLLNPA--QVFELSA-SQGP-----EVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 335 ~pllV~vNPkSG~~~-g~~l~~~~~~lLnp~--qV~dl~~-t~~p-----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
++++||..+...... | +.+++...|... .++.+.. ...| +.+.+.+++...+.||+.|| |++..+.-.
T Consensus 34 ~~~livtd~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~ 110 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDG--AVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKG 110 (387)
T ss_dssp SEEEEECCTTTC--CCS--SHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECcchhhccch--HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHH
Confidence 688888887654430 1 234444444322 3322221 1122 34556677667788999988 777777666
Q ss_pred HHhc--------CC-------CCCCCEEEeeC
Q 005250 406 IEKR--------NF-------ESPPPVAVLPL 422 (706)
Q Consensus 406 L~~~--------~~-------~~~ppvgILPl 422 (706)
+.-. .+ .+.+|+..+|.
T Consensus 111 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 111 IGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 5432 01 14678999997
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.37 E-value=30 Score=27.27 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=24.1
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 8 ~~~C~vC~~~----------g~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG----------GELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC----------SSCEECSSCCCEECTTTSSS
T ss_pred CCCCccCCCC----------CCEEEcCCCChhhcccccCC
Confidence 4689999863 23389999999999999873
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.20 E-value=27 Score=27.10 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
..+|.+|+.. +. -+.|..|.+.+|-.|..
T Consensus 9 ~~~C~vC~~~--g~------ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 9 MEFCRVCKDG--GE------LLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp CSSCTTTCCC--SS------CBCCSSSCCCBCSSSSS
T ss_pred CCcCCCCCCC--CC------EEEcCCCCHHHcccccC
Confidence 5689999762 22 26799999999999975
No 94
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=26.76 E-value=43 Score=33.85 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCC
Q 005250 372 SQGPEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 372 t~~p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGT 424 (706)
+..|..|++...+....|||-.||..|+-+-+..|.++..... .+-|+|.|-
T Consensus 127 ~~d~~~ale~L~~lG~~rILTSG~~~~a~~g~~~L~~Lv~~a~-~i~Im~GgG 178 (256)
T 1twd_A 127 CANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRD-APIIMAGAG 178 (256)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSSS-CCEEEEESS
T ss_pred cCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhhC-CcEEEecCC
Confidence 3568888988888888999999999998777666655422233 788888663
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.59 E-value=32 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=24.7
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
...+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 8 ~~~~C~vC~~~----------g~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 8 HEDFCSVCRKS----------GQLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SCCSCSSSCCS----------SCCEECSSSSCEECSSSSSS
T ss_pred CCCCCccCCCC----------CeEEEcCCCCcceECccCCC
Confidence 45689999863 12379999999999999874
No 96
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=26.54 E-value=1.4e+02 Score=32.02 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cE--EEEeccC---Chh---HHHHHHHhCCC---CeEEEEcCchhHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QV--FELSASQ---GPE---VGLELFSNFQY---FRVLVCGGDGTVA 400 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV--~dl~~t~---~p~---~al~l~~~~~~---~~Ilv~GGDGTV~ 400 (706)
.++++||.++.... .+.+++...|... ++ +.+...+ ..+ .+.+.+++... +.||+.|| |++.
T Consensus 62 ~~rvlIVtd~~v~~----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gsv~ 136 (390)
T 3okf_A 62 KQKVVIVTNHTVAP----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GVIG 136 (390)
T ss_dssp TCEEEEEEETTTHH----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cHHh
Confidence 47899999885543 3566666666543 22 2232111 112 23344444433 56888887 8888
Q ss_pred HHHHHHHhcCCCCCCCEEEeeC
Q 005250 401 WVLNAIEKRNFESPPPVAVLPL 422 (706)
Q Consensus 401 ~VLn~L~~~~~~~~ppvgILPl 422 (706)
.+.-.+... +.+.+|+..+|.
T Consensus 137 D~ak~~Aa~-~~rgip~I~IPT 157 (390)
T 3okf_A 137 DLVGFAAAC-YQRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHH-hcCCCCEEEeCC
Confidence 887665321 225688999997
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=26.48 E-value=36 Score=26.75 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 154 LSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 154 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
...+|.+|+.. +. -+.|..|.+.+|-.|..
T Consensus 7 ~~~~C~vC~~~--g~------ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRDG--GE------LICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSCC--SS------CEECSSCCCEECTTTSS
T ss_pred CCCCCccCCCC--CC------EEEcCCCChhhcccccC
Confidence 35689999763 22 27899999999999975
No 98
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=26.33 E-value=1.2e+02 Score=31.70 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=48.6
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCC--cE--EEEeccCChhHHHHH--HHhCCCCeEEEEcCchhHHHHHHHHHh
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPA--QV--FELSASQGPEVGLEL--FSNFQYFRVLVCGGDGTVAWVLNAIEK 408 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~--qV--~dl~~t~~p~~al~l--~~~~~~~~Ilv~GGDGTV~~VLn~L~~ 408 (706)
++++||..+..-. .+.+++...|... ++ |+.......+...+. +++...+.||+.|| |++..+.-.+.-
T Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA~ 109 (354)
T 3ce9_A 35 KRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAF 109 (354)
T ss_dssp SEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHHh
Confidence 5888998875433 3456666666543 33 432221222233333 23224577888887 788887776653
Q ss_pred cCCCCCCCEEEeeCCCcc
Q 005250 409 RNFESPPPVAVLPLGTGN 426 (706)
Q Consensus 409 ~~~~~~ppvgILPlGTGN 426 (706)
. +.+|+..+|.=.+.
T Consensus 110 ~---~~~p~i~IPTT~~t 124 (354)
T 3ce9_A 110 L---RKLPFISVPTSTSN 124 (354)
T ss_dssp H---HTCCEEEEESCCSS
T ss_pred h---cCCCEEEecCcccC
Confidence 2 36799999974443
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.03 E-value=31 Score=27.61 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=26.0
Q ss_pred CCCccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 80 EQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 80 ~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
..+.|| +|...-. .| ..-.+|+.|..=.|..|+....
T Consensus 14 ~~~~~C-~C~~~~~--~g----~~mI~Cd~C~~W~H~~Cvg~~~ 50 (72)
T 1wee_A 14 NWKVDC-KCGTKDD--DG----ERMLACDGCGVWHHTRCIGINN 50 (72)
T ss_dssp SSEECC-TTCCCSC--CS----SCEEECSSSCEEEETTTTTCCT
T ss_pred CcceEe-eCCCccC--CC----CcEEECCCCCCccCCeeeccCc
Confidence 356889 7986531 11 1237999999999999987643
No 100
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=25.69 E-value=2.1e+02 Score=27.13 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCC---C-CeEEEEcCchhHHHHHHHHHhcCCCCCCCE
Q 005250 346 GGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQ---Y-FRVLVCGGDGTVAWVLNAIEKRNFESPPPV 417 (706)
Q Consensus 346 G~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~---~-~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppv 417 (706)
|+..-..+.++....|+..++ ||+.. ...|+...++++++. . ..|.++||.+-+.-|+.++.. .|.|
T Consensus 20 GS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~-----~PVI 94 (174)
T 3kuu_A 20 GSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTL-----VPVL 94 (174)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCS-----SCEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccC-----CCEE
Confidence 443333456666666666555 66543 467888888887762 2 246689999999999998753 4556
Q ss_pred EEeeC
Q 005250 418 AVLPL 422 (706)
Q Consensus 418 gILPl 422 (706)
|+=+.
T Consensus 95 gVP~~ 99 (174)
T 3kuu_A 95 GVPVQ 99 (174)
T ss_dssp EEEEC
T ss_pred EeeCC
Confidence 66443
No 101
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=25.55 E-value=54 Score=30.99 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred EEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhhhc
Q 005250 392 VCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSRVL 432 (706)
Q Consensus 392 v~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR~L 432 (706)
-.|||-| .+++.-+...-....|-+.+|=+|| ||+++..
T Consensus 57 Gi~G~tt-~~~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~ 95 (209)
T 4hf7_A 57 GISGQTS-YQFLLRFREDVINLSPALVVINAGT-NDVAENT 95 (209)
T ss_dssp ECTTCCH-HHHHHHHHHHTGGGCCSEEEECCCH-HHHTTSS
T ss_pred ccCcccH-HHHHHHHHHHHHhcCCCEEEEEeCC-CcCcccc
Confidence 4688855 5566666553333468899998887 9987654
No 102
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=25.36 E-value=18 Score=28.42 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=9.7
Q ss_pred eEEEEcCchhH
Q 005250 389 RVLVCGGDGTV 399 (706)
Q Consensus 389 ~Ilv~GGDGTV 399 (706)
-|+||+||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 48999999997
No 103
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.26 E-value=55 Score=27.59 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=23.5
Q ss_pred CCCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 154 LSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 154 ~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
...+|.+|++. +. -+.|..|.+.+|-.|..
T Consensus 24 n~~~C~vC~~~--g~------LL~CD~C~~~fH~~Cl~ 53 (88)
T 1fp0_A 24 SATICRVCQKP--GD------LVMCNQCEFCFHLDCHL 53 (88)
T ss_dssp SSSCCSSSCSS--SC------CEECTTSSCEECTTSSS
T ss_pred CCCcCcCcCCC--CC------EEECCCCCCceecccCC
Confidence 35689999764 22 27899999999999973
No 104
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.25 E-value=42 Score=25.98 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=26.4
Q ss_pred CCCCcccccCCCcCcCccCCCCceeecccccccchhhhhh
Q 005250 153 ELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 153 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
....+|.+|+++-... ..-+.|.-|..=+|.+|...
T Consensus 4 ~e~~~C~~C~~~~~~~----~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAAD----EFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSS----SCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCC----CCEEEccCCCCCCCccccCc
Confidence 4467899998875311 12378999999999999764
No 105
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.02 E-value=26 Score=25.86 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=23.3
Q ss_pred cccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 84 TCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 84 ~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
+|.+|.+.=. ....+.|+.|....|..|+.-
T Consensus 2 ~C~vC~~~~~-------~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGE-------DDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSC-------CSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCC-------CCCEEECCCCChhhCcccCCC
Confidence 6899986421 134489999999999999863
No 106
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=24.31 E-value=1.5e+02 Score=30.76 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE--EEEeccC---Ch---hHHHHHHHhCCC---CeEEEEcCchhHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV--FELSASQ---GP---EVGLELFSNFQY---FRVLVCGGDGTVAWV 402 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV--~dl~~t~---~p---~~al~l~~~~~~---~~Ilv~GGDGTV~~V 402 (706)
.++++|+.++..... +.+++...|...++ +.+...+ .. +.+.+.+++... +.||+.|| |++..+
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ 100 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDM 100 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHH
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHHH
Confidence 368889988755442 45667777765443 3232111 11 234445555444 67888887 788887
Q ss_pred HHHHHhcCCCCCCCEEEeeCC
Q 005250 403 LNAIEKRNFESPPPVAVLPLG 423 (706)
Q Consensus 403 Ln~L~~~~~~~~ppvgILPlG 423 (706)
.-.+.-. +.+.+|+..+|.=
T Consensus 101 ak~~A~~-~~rgip~i~IPTT 120 (343)
T 3clh_A 101 VGFASSI-YFRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHH-BTTCCEEEEEECS
T ss_pred HHHHHHH-hccCCCEEEeCCc
Confidence 7665422 1256899999954
No 107
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=24.24 E-value=64 Score=33.61 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=38.3
Q ss_pred hhHHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhh
Q 005250 375 PEVGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMS 429 (706)
Q Consensus 375 p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlA 429 (706)
.+.+.+.+++..-+.+++.|||||..-+ +.|.+. ..++--+|-=--||+.
T Consensus 82 ~~~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~~----~i~vigiPkTIDNDl~ 131 (319)
T 4a3s_A 82 REKGIANLKKLGIEGLVVIGGDGSYMGA-KKLTEH----GFPCVGVPGTIDNDIP 131 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEEECTTHHHHH-HHHHHT----TCCEEEEEEETTCCCT
T ss_pred HHHHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhcc----CCcEEEeeccccCCCC
Confidence 4456666777777889999999998765 456553 4678889998899986
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.07 E-value=36 Score=27.06 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=26.2
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhhc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFTA 123 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~~ 123 (706)
.+.|| +|+..-.+ ..-.+|+.|..=.|..|+....
T Consensus 18 ~~~~C-iC~~~~~~-------~~MIqCd~C~~WfH~~Cvgi~~ 52 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-------RPMIECNECHTWIHLSCAKIRK 52 (68)
T ss_dssp TCCCS-TTCCCCTT-------CCEEECTTTCCEEETTTTTCCT
T ss_pred CceEe-ECCCcCCC-------CCEEECCCCCccccccccCcCc
Confidence 67899 99864322 2337999999999999987543
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.04 E-value=17 Score=34.16 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
.+.|| +|+..-.. . +.-.+|+.|..-.|..|+..
T Consensus 7 ~~~~C-~C~~~~~~-~-----~~mi~Cd~C~~WfH~~Cv~~ 40 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-S-----KFYIGCDRCQNWYHGRCVGI 40 (174)
T ss_dssp CCEET-TTTEECCT-T-----SCEEECTTTCCEEEHHHHTC
T ss_pred CCcEe-eCCCCCCC-C-----CCEeECCCCCchhChhhcCC
Confidence 67899 99864211 1 23379999999999999854
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=24.00 E-value=20 Score=30.07 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=25.3
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.+|.+|.+.-... ...-+.|+.|...+|..|...
T Consensus 25 ~~~C~vC~~~~s~~-----~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 25 DAVCSICMDGESQN-----SNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCSSCCSSSSCS-----EEEEEECSSSCCCCCHHHHTC
T ss_pred CCcCCcCCCCCCCC-----CCCEEECCCCCchhhcccCCC
Confidence 46899998642110 124489999999999999874
No 111
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.83 E-value=34 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCccccccccccccccccCCCCCceeccccC---cccCCCchhh
Q 005250 80 EQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCG---VAAHFFCSEF 121 (706)
Q Consensus 80 ~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~---~~vH~~C~~~ 121 (706)
+.+.|| +|+..-.+ .-..|+.|. --.|..|+..
T Consensus 24 ~~~~yC-iC~~~~~g--------~MI~CD~c~C~~eWfH~~CVgl 59 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG--------PMVACDNPACPFEWFHYGCVGL 59 (90)
T ss_dssp CCSCCS-TTTCCCSS--------SEECCCSSSCSCSCEETTTSSC
T ss_pred CCCcEE-EeCCCCCC--------CEEEecCCCCccccCcCccCCC
Confidence 367899 99874332 226899976 5789999874
No 112
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.64 E-value=35 Score=26.23 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=23.9
Q ss_pred CccccccccccccccccCCCCCceeccccCcccCCCchhh
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEF 121 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~ 121 (706)
-.+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 5 ~~~C~vC~~~----------g~ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 5 EDFCSVCRKS----------GQLLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CSSCTTTCCC----------SSCEECSSSSCEECGGGSSS
T ss_pred CCCCcCCCCC----------CcEEEcCCCCcCEECCcCCC
Confidence 3589999863 23389999999999999874
No 113
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=23.35 E-value=2.1e+02 Score=27.34 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=52.5
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEec---cCChhHHHHHHHhCC----CCeEEEEcCchhHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSA---SQGPEVGLELFSNFQ----YFRVLVCGGDGTVAWVLNAI 406 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~---t~~p~~al~l~~~~~----~~~Ilv~GGDGTV~~VLn~L 406 (706)
-|+..|+= |+..-..+.++....|...++ ||+.. ...|+...++.+++. ...|.++||.+-+.-|+.++
T Consensus 13 ~~~V~Iim---GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 89 (183)
T 1o4v_A 13 VPRVGIIM---GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI 89 (183)
T ss_dssp -CEEEEEE---SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEe---ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc
Confidence 35555553 444334566677777776665 66543 456888888887663 23466899999999999998
Q ss_pred HhcCCCCCCCEEEeeCCCc
Q 005250 407 EKRNFESPPPVAVLPLGTG 425 (706)
Q Consensus 407 ~~~~~~~~ppvgILPlGTG 425 (706)
.. .|.||+ |.-++
T Consensus 90 t~-----~PVIgV-P~~~~ 102 (183)
T 1o4v_A 90 TH-----LPVIGV-PVKTS 102 (183)
T ss_dssp CS-----SCEEEE-EECCT
T ss_pred cC-----CCEEEe-eCCCC
Confidence 53 345554 55443
No 114
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=23.21 E-value=32 Score=33.02 Aligned_cols=29 Identities=28% Similarity=0.702 Sum_probs=22.6
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
..+|.+|++. +. -+.|..|.+.+|-.|..
T Consensus 2 ~~~C~~C~~~--g~------ll~Cd~C~~~~H~~Cl~ 30 (189)
T 2ro1_A 2 ATICRVCQKP--GD------LVMCNQCEFCFHLDCHL 30 (189)
T ss_dssp CCCBTTTCCC--SS------CCCCTTTCCBCCSTTST
T ss_pred CCcCccCCCC--Cc------eeECCCCCchhccccCC
Confidence 4589999753 22 26799999999999974
No 115
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=23.08 E-value=26 Score=35.61 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=11.6
Q ss_pred CCeEEEEcCchhHH
Q 005250 387 YFRVLVCGGDGTVA 400 (706)
Q Consensus 387 ~~~Ilv~GGDGTV~ 400 (706)
..|||||||+||-+
T Consensus 46 ~q~~i~~g~~~t~~ 59 (275)
T 3gw6_A 46 GQRIIFCGGEGTSS 59 (275)
T ss_dssp GCEEEEESSSSSST
T ss_pred ccEEEEecCCCCCC
Confidence 35999999999943
No 116
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.74 E-value=36 Score=32.34 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=22.6
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSE 120 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~ 120 (706)
.+|.+|.+. +..+.|+.|....|..|+.
T Consensus 5 ~~C~~C~~~----------g~ll~Cd~C~~~~H~~C~~ 32 (184)
T 3o36_A 5 DWCAVCQNG----------GELLCCEKCPKVFHLSCHV 32 (184)
T ss_dssp SSCTTTCCC----------SSCEECSSSSCEECTTTSS
T ss_pred CccccCCCC----------CeeeecCCCCcccCccccC
Confidence 479999842 2348999999999999974
No 117
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.58 E-value=2.4e+02 Score=23.33 Aligned_cols=81 Identities=7% Similarity=0.038 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCcEEEEeccCChhHHHHHHHhCCCCeEEEE--cCchhHHHHHHHHHhcCCCCCCCEEEeeCCCcchhhh
Q 005250 353 LRRRLNMLLNPAQVFELSASQGPEVGLELFSNFQYFRVLVC--GGDGTVAWVLNAIEKRNFESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 353 l~~~~~~lLnp~qV~dl~~t~~p~~al~l~~~~~~~~Ilv~--GGDGTV~~VLn~L~~~~~~~~ppvgILPlGTGNDlAR 430 (706)
....+..+|...+ |++.......+|++.+++.+.+.||+- -.|..--+++..|.+......++|.++......+..+
T Consensus 18 ~~~~l~~~L~~~g-~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 96 (132)
T 3lte_A 18 MAAAIERVLKRDH-WQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQ 96 (132)
T ss_dssp HHHHHHHHHHHTT-CEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHH
T ss_pred HHHHHHHHHHHCC-cEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHH
Confidence 4455556665433 222234567888888887766665553 1233335677777654322345665554333333334
Q ss_pred hccc
Q 005250 431 VLQW 434 (706)
Q Consensus 431 ~Lgw 434 (706)
.+..
T Consensus 97 ~~~~ 100 (132)
T 3lte_A 97 AVTE 100 (132)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.43 E-value=39 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.642 Sum_probs=23.7
Q ss_pred CCccccccccccccccccCCCCCceeccc--cCc-ccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAV--CGV-AAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~--C~~-~vH~~C~~~ 121 (706)
.++|| +|++.-.+ .-..|+. |.+ -.|..|+..
T Consensus 15 ~~~~C-~C~~~~~g--------~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 15 EPTYC-LCHQVSYG--------EMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp SCCCS-TTCCCSCS--------SEECCSCSSCSCCCEETTTTTC
T ss_pred CCCEE-ECCCCCCC--------CEeEeeCCCCCCccEecccCCc
Confidence 67899 89874322 2379999 774 789999984
No 119
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.42 E-value=52 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=23.7
Q ss_pred CCccccccccccccccccCCCCCceeccc--cC-cccCCCchhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAV--CG-VAAHFFCSEF 121 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~--C~-~~vH~~C~~~ 121 (706)
.++|| +|++.-.+ .-..|+. |. --.|..|+..
T Consensus 35 e~~yC-iC~~~~~g--------~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 35 EPTYC-LCHQVSYG--------EMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp CCBCS-TTCCBCCS--------CCCCCSCSSCSCCCCCSTTTTC
T ss_pred CCcEE-ECCCCCCC--------CEeEecCCCCCCCCEecccCCc
Confidence 67899 99975432 2269999 76 4689999974
No 120
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=22.16 E-value=47 Score=32.92 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=36.9
Q ss_pred CChhHHHHHHHhCCCCeEEEEcCchh--HHHHHHHHHhcCCCCCCCEEEeeCCC
Q 005250 373 QGPEVGLELFSNFQYFRVLVCGGDGT--VAWVLNAIEKRNFESPPPVAVLPLGT 424 (706)
Q Consensus 373 ~~p~~al~l~~~~~~~~Ilv~GGDGT--V~~VLn~L~~~~~~~~ppvgILPlGT 424 (706)
..|..|++...+....|||-.||..| +-+-+..|.++.......+-|+|.|-
T Consensus 133 ~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgG 186 (224)
T 2bdq_A 133 SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGG 186 (224)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSS
T ss_pred cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCC
Confidence 67888999888888899999999999 76555544432111234678888663
No 121
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=22.15 E-value=1.5e+02 Score=31.08 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=49.7
Q ss_pred CcEEEEEcCCcCCCChHHHHHHHHHhhCCCc--E-EEEeccCCh----hHHHHHHHhCCCCeEEEEcCchhHHHHHHHHH
Q 005250 335 RPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ--V-FELSASQGP----EVGLELFSNFQYFRVLVCGGDGTVAWVLNAIE 407 (706)
Q Consensus 335 ~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q--V-~dl~~t~~p----~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~ 407 (706)
++++||..+.+-. .+.+++...|.... + +.+...+.+ +.+.+.+++...+.||+.|| |++..+.-.+.
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 106 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVA 106 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 6888988765433 24556666665433 3 223211112 23455566667788999988 78888777665
Q ss_pred hcCCCCCCCEEEeeCC
Q 005250 408 KRNFESPPPVAVLPLG 423 (706)
Q Consensus 408 ~~~~~~~ppvgILPlG 423 (706)
-. ..+|+..+|.=
T Consensus 107 ~~---~~~p~i~IPTT 119 (370)
T 1jq5_A 107 DE---LDAYIVIVPTA 119 (370)
T ss_dssp HH---HTCEEEEEESS
T ss_pred Hh---cCCCEEEeccc
Confidence 32 35789999973
No 122
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=22.07 E-value=43 Score=26.86 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=26.1
Q ss_pred CCCCcccccCCCcCcCccCCCCceeecccccccchhhhhh
Q 005250 153 ELSAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHAI 192 (706)
Q Consensus 153 ~~~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~~ 192 (706)
....+|.+|++.-.+. .-+.|-.|..-+|-.|...
T Consensus 16 ~~~~~C~~C~~~~~~~-----~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGS-----PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSC-----CEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCC-----CEEEcCCCCcccccccCCC
Confidence 3456899998864332 2378999999999999864
No 123
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=21.96 E-value=42 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCccccccccccccccccCCCCCceeccccCccc
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAA 114 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~v 114 (706)
.+..|..|...-...|--|..++ .-|..|++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~ 35 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYH 35 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHH
Confidence 56789999876544444343444 6799998743
No 124
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.85 E-value=29 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCccccccccccccccccCCCCCceeccccCcccCCCchhhh
Q 005250 81 QPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFT 122 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~ 122 (706)
.+.|| +|...-.. . ..-.+|+.|..=.|..|+...
T Consensus 11 ~~~~C-~C~~~~d~-~-----~~MIqCd~C~~WfH~~Cvgl~ 45 (79)
T 1wep_A 11 VPVYC-LCRQPYNV-N-----HFMIECGLCQDWFHGSCVGIE 45 (79)
T ss_dssp CCCCS-TTSCSCCS-S-----SCEEEBTTTCCEEEHHHHTCC
T ss_pred CccEE-EcCCccCC-C-----CceEEcCCCCCcEEeeecCcc
Confidence 67888 99875311 1 223699999999999998753
No 125
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=21.48 E-value=1.6e+02 Score=31.09 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCcCCCChHHHHHHHHHhhCCCc----EEEEeccCC----hhHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 005250 334 ARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQ----VFELSASQG----PEVGLELFSNFQYFRVLVCGGDGTVAWVLNA 405 (706)
Q Consensus 334 ~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~q----V~dl~~t~~----p~~al~l~~~~~~~~Ilv~GGDGTV~~VLn~ 405 (706)
.++++||..+.--. ..+.+++...|.... +|+-..... .+++.+.+++...+.||++|| |++..+.-.
T Consensus 31 ~~~~liVtd~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~ 106 (383)
T 3ox4_A 31 FKNALIVSDAFMNK---SGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDCAKA 106 (383)
T ss_dssp CCEEEEEEEHHHHH---TTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHH
T ss_pred CCEEEEEECCchhh---CchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 36788887753211 114566666666543 243221111 234556667667789999999 888777665
Q ss_pred HHhcC---------------CCCCCCEEEeeCCC
Q 005250 406 IEKRN---------------FESPPPVAVLPLGT 424 (706)
Q Consensus 406 L~~~~---------------~~~~ppvgILPlGT 424 (706)
+.-.- ..+.+|+..+|.=.
T Consensus 107 ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 140 (383)
T 3ox4_A 107 IALVATNGGEVKDYEGIDKSKKPALPLMSINTTA 140 (383)
T ss_dssp HHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSS
T ss_pred HHHHHhCCCCHHHHhcccccccCCCCEEEEeCCC
Confidence 53210 02367899999743
No 126
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.43 E-value=24 Score=28.42 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCCccccccccccccccccCCCCCceeccccCcccCCCchhhh
Q 005250 80 EQPSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSEFT 122 (706)
Q Consensus 80 ~~P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~~~ 122 (706)
....||.+|...-.+ ..-+.|+.|..-.|..|+...
T Consensus 16 ~~~~~C~~C~~~~~~-------~~mi~CD~C~~wfH~~Cv~~~ 51 (75)
T 2k16_A 16 NQIWICPGCNKPDDG-------SPMIGCDDCDDWYHWPCVGIM 51 (75)
T ss_dssp CEEECBTTTTBCCSS-------CCEEECSSSSSEEEHHHHTCS
T ss_pred CCCcCCCCCCCCCCC-------CCEEEcCCCCcccccccCCCC
Confidence 356789999875422 223799999999999998753
No 127
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.39 E-value=40 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred ccccccccccccccccCCCCCceeccccCcccCCCchh
Q 005250 83 STCCVCLTSLVLPQSVGAHFPVHRCAVCGVAAHFFCSE 120 (706)
Q Consensus 83 ~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~vH~~C~~ 120 (706)
.+|.+|...=.. ..-+.|+.|....|..|+.
T Consensus 17 ~~C~vC~~~~~~-------~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 17 YICQVCSRGDED-------DKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCSSSCCSGGG-------GGCEECTTTCCEECSSSSS
T ss_pred CCCccCCCcCCC-------CCEEEcCCCCchhccccCC
Confidence 479999864211 2337999999999999986
No 128
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=21.06 E-value=28 Score=25.33 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=18.6
Q ss_pred CccccccccccccccccCCCCCceeccccCcc
Q 005250 82 PSTCCVCLTSLVLPQSVGAHFPVHRCAVCGVA 113 (706)
Q Consensus 82 P~~C~vC~~~i~g~~~lG~~~~~~~C~~C~~~ 113 (706)
|..|..|...-...|--|..++ .-|..|++.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4568888865433333333345 678888865
No 129
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.75 E-value=40 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCcccccCCCcCcCccCCCCceeecccccccchhhhh
Q 005250 155 SAFCFYCDEPCGVPFINDCPTWHCLWCQRRIHVKCHA 191 (706)
Q Consensus 155 ~~~C~~C~k~c~~~~~~g~~~~~C~WC~~~vH~~C~~ 191 (706)
..+|.+|++.-...- -.-+.|--|.+.||-.|+.
T Consensus 16 ~~~C~vC~~~~~~~~---~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASG---NQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTT---CCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCC---CceEECCCCCCeEcCccCC
Confidence 458999987532100 0237899999999999964
No 130
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.49 E-value=1.9e+02 Score=28.46 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCcCCCChHHHHHHHHHhhCCCcE-EEEeccCChhHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHHhcC
Q 005250 333 DARPLLVFINAKSGGQLGHYLRRRLNMLLNPAQV-FELSASQGPEVGLELFSNF-QYFRVLVCGGDGTVAWVLNAIEKRN 410 (706)
Q Consensus 333 ~~~pllV~vNPkSG~~~g~~l~~~~~~lLnp~qV-~dl~~t~~p~~al~l~~~~-~~~~Ilv~GGDGTV~~VLn~L~~~~ 410 (706)
+.+++.++.+|.. . .+....+-++..+...++ ++.......+++.+.++++ +....|.|+.|.+.-.++.++.+..
T Consensus 132 g~~~I~~i~~~~~-~-~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~ 209 (295)
T 3lft_A 132 NVKTIGALYSSSE-D-NSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSN 209 (295)
T ss_dssp TCCEEEEEEETTC-H-HHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHHHT
T ss_pred CCcEEEEEeCCCC-c-chHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHhcCCEEEECCchhHHHHHHHHHHHH
Confidence 5689999998843 2 133344556666654443 2211112234444544444 3445777889988877777777654
Q ss_pred CCCCCC
Q 005250 411 FESPPP 416 (706)
Q Consensus 411 ~~~~pp 416 (706)
...+.|
T Consensus 210 ~~~~i~ 215 (295)
T 3lft_A 210 QSSKKP 215 (295)
T ss_dssp TTTCCC
T ss_pred HHcCCC
Confidence 333333
No 131
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=20.32 E-value=85 Score=36.72 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCeEEEEcCchhHHHHHHHHHhc--CC-CCCCCEEEeeCCCcchhhh
Q 005250 377 VGLELFSNFQYFRVLVCGGDGTVAWVLNAIEKR--NF-ESPPPVAVLPLGTGNDMSR 430 (706)
Q Consensus 377 ~al~l~~~~~~~~Ilv~GGDGTV~~VLn~L~~~--~~-~~~ppvgILPlGTGNDlAR 430 (706)
.+.+.+++..-+.++++|||||..-+.. |.+. .. ...+||--||-=--||+.-
T Consensus 480 ~~~~~l~~~~Id~LvvIGGdgS~~~a~~-L~~~~~~~~~~~i~vvgiPkTIDNDl~g 535 (762)
T 3o8l_A 480 QISANITKFNIQGLVIIGGFEAYTGGLE-LMEGRKQFDELCIPFVVIPATVSNNVPG 535 (762)
T ss_dssp HHHHHHHHTTCCCEEEEESHHHHHHHHH-HHHHHHHCSTTCSCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHHHhccccCCCEEeeccccCCCCCC
Confidence 4555566666788999999999877643 3221 11 1257888899999999963
No 132
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.07 E-value=38 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCccccccccccccccc---cCCCCCceeccccCcccCCCch
Q 005250 81 QPSTCCVCLTSLVLPQS---VGAHFPVHRCAVCGVAAHFFCS 119 (706)
Q Consensus 81 ~P~~C~vC~~~i~g~~~---lG~~~~~~~C~~C~~~vH~~C~ 119 (706)
...||.+|...-..... . .+|+.|..=+|..|.
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~M------IqCd~C~~W~H~~Cv 36 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKM------MQCGKCDRWVHSKCE 36 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCE------EECTTTCCEEEGGGS
T ss_pred CcCcCCCCcCccCCcccCCCe------EECCCCCcccchhcc
Done!