Query 005252
Match_columns 706
No_of_seqs 476 out of 3167
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 20:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1E-109 2E-114 958.0 61.1 587 46-659 20-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 8E-104 2E-108 916.5 64.4 582 50-657 16-615 (617)
3 PLN03211 ABC transporter G-25; 100.0 3E-103 6E-108 912.9 66.9 577 45-654 33-657 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 5E-101 1E-105 955.1 64.0 590 48-656 26-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 3E-100 6E-105 945.9 66.6 580 49-658 865-1469(1470)
6 PLN03140 ABC transporter G fam 100.0 4.9E-99 1E-103 934.6 63.2 593 47-656 127-790 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-97 3E-102 925.1 64.8 575 50-657 758-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1.4E-96 3E-101 861.8 39.3 577 52-660 788-1388(1391)
9 KOG0065 Pleiotropic drug resis 100.0 3.1E-89 6.8E-94 800.1 44.0 573 69-658 128-733 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 4.1E-52 8.9E-57 407.2 22.7 216 51-282 2-223 (240)
11 COG1125 OpuBA ABC-type proline 100.0 7E-49 1.5E-53 391.5 22.7 226 52-307 2-235 (309)
12 COG1135 AbcC ABC-type metal io 100.0 7.6E-49 1.7E-53 402.2 23.1 220 52-283 2-230 (339)
13 COG1116 TauB ABC-type nitrate/ 100.0 2.3E-48 4.9E-53 391.5 24.1 204 51-271 3-207 (248)
14 COG1127 Ttg2A ABC-type transpo 100.0 4.5E-48 9.8E-53 384.3 23.1 220 49-284 6-235 (263)
15 COG1136 SalX ABC-type antimicr 100.0 8.8E-48 1.9E-52 386.9 24.8 208 52-273 2-220 (226)
16 COG1120 FepC ABC-type cobalami 100.0 4E-48 8.6E-53 396.6 22.0 219 51-283 2-227 (258)
17 COG1131 CcmA ABC-type multidru 100.0 2.1E-47 4.5E-52 405.1 27.3 221 51-288 4-230 (293)
18 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-47 6E-52 388.5 24.9 218 50-284 3-227 (254)
19 COG3839 MalK ABC-type sugar tr 100.0 2.9E-47 6.4E-52 404.1 24.7 217 51-284 3-223 (338)
20 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-47 7.4E-52 389.0 20.6 220 50-284 1-227 (345)
21 COG3842 PotA ABC-type spermidi 100.0 4.4E-47 9.6E-52 404.8 22.4 218 50-283 4-225 (352)
22 COG3638 ABC-type phosphate/pho 100.0 1.6E-46 3.4E-51 372.4 20.9 222 50-284 2-237 (258)
23 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-46 3.1E-51 363.3 17.9 217 52-284 2-222 (245)
24 COG2884 FtsE Predicted ATPase 100.0 1E-45 2.2E-50 354.7 20.4 210 52-277 2-219 (223)
25 PRK13537 nodulation ABC transp 100.0 6.5E-45 1.4E-49 388.9 28.7 217 51-284 7-227 (306)
26 TIGR03265 PhnT2 putative 2-ami 100.0 4.9E-45 1.1E-49 396.4 28.2 217 51-284 4-224 (353)
27 PRK11650 ugpC glycerol-3-phosp 100.0 6.1E-45 1.3E-49 396.1 28.1 217 51-283 3-223 (356)
28 TIGR02314 ABC_MetN D-methionin 100.0 9.6E-45 2.1E-49 391.9 28.7 219 52-283 2-229 (343)
29 PRK11432 fbpC ferric transport 100.0 9.4E-45 2E-49 393.6 28.3 216 51-283 6-225 (351)
30 COG1117 PstB ABC-type phosphat 100.0 1.6E-45 3.5E-50 359.2 19.7 222 50-283 6-236 (253)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-44 3.3E-49 393.3 28.2 216 51-283 5-227 (362)
32 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-44 3.9E-49 371.5 27.3 215 52-282 1-224 (235)
33 PRK13536 nodulation factor exp 100.0 3.7E-44 8.1E-49 387.6 30.0 219 49-284 39-261 (340)
34 PRK10851 sulfate/thiosulfate t 100.0 2.4E-44 5.1E-49 391.0 28.5 219 51-283 2-225 (353)
35 COG1124 DppF ABC-type dipeptid 100.0 9.6E-45 2.1E-49 362.2 23.2 220 50-284 2-231 (252)
36 PRK09452 potA putrescine/sperm 100.0 2.7E-44 5.8E-49 392.8 28.5 217 50-283 13-233 (375)
37 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-44 2.8E-49 369.9 23.6 217 51-284 3-228 (235)
38 KOG0058 Peptide exporter, ABC 100.0 4E-45 8.6E-50 410.0 20.6 250 1-284 432-691 (716)
39 PRK11607 potG putrescine trans 100.0 9.1E-44 2E-48 389.1 29.1 217 50-283 18-238 (377)
40 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-43 2.4E-48 379.3 28.9 218 50-284 3-224 (303)
41 cd03265 ABC_DrrA DrrA is the A 100.0 7.6E-44 1.6E-48 363.2 26.2 213 52-281 1-218 (220)
42 cd03259 ABC_Carb_Solutes_like 100.0 7.3E-44 1.6E-48 361.4 25.8 209 52-277 1-213 (213)
43 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-43 2.7E-48 361.6 27.3 216 52-280 1-219 (220)
44 cd03296 ABC_CysA_sulfate_impor 100.0 1.4E-43 3.1E-48 365.8 27.7 218 51-282 2-224 (239)
45 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-43 2.4E-48 365.6 26.5 217 52-282 1-230 (236)
46 PRK13643 cbiO cobalt transport 100.0 1.5E-43 3.2E-48 375.6 28.0 232 52-296 2-248 (288)
47 PRK11000 maltose/maltodextrin 100.0 1.5E-43 3.3E-48 387.4 28.6 216 51-283 3-222 (369)
48 COG3840 ThiQ ABC-type thiamine 100.0 2.8E-44 6E-49 342.2 19.5 213 52-283 2-218 (231)
49 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-43 3.2E-48 363.7 26.4 214 52-282 1-220 (232)
50 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-43 2.4E-48 360.9 25.0 207 52-273 2-216 (216)
51 PRK11153 metN DL-methionine tr 100.0 3E-43 6.5E-48 381.7 28.7 219 52-283 2-229 (343)
52 cd03301 ABC_MalK_N The N-termi 100.0 2.6E-43 5.7E-48 357.2 26.3 209 52-277 1-213 (213)
53 cd03258 ABC_MetN_methionine_tr 100.0 2.7E-43 5.8E-48 362.2 26.4 218 52-282 2-228 (233)
54 PRK13637 cbiO cobalt transport 100.0 6.5E-43 1.4E-47 370.6 29.6 221 51-283 2-233 (287)
55 PRK13634 cbiO cobalt transport 100.0 6E-43 1.3E-47 371.4 28.9 231 51-294 2-248 (290)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 4.9E-43 1.1E-47 374.0 28.3 216 51-284 2-221 (301)
57 cd03260 ABC_PstB_phosphate_tra 100.0 2.4E-43 5.3E-48 361.1 24.8 214 52-281 1-226 (227)
58 cd03269 ABC_putative_ATPase Th 100.0 3.2E-43 7E-48 355.9 25.3 209 52-277 1-210 (210)
59 PRK13631 cbiO cobalt transport 100.0 1E-42 2.2E-47 373.9 30.5 232 50-294 20-278 (320)
60 cd03263 ABC_subfamily_A The AB 100.0 3.8E-43 8.3E-48 357.8 25.8 214 52-281 1-218 (220)
61 cd03266 ABC_NatA_sodium_export 100.0 4.5E-43 9.8E-48 356.8 25.9 213 52-277 2-218 (218)
62 TIGR01188 drrA daunorubicin re 100.0 3.4E-43 7.5E-48 375.3 26.1 205 68-284 5-213 (302)
63 cd03256 ABC_PhnC_transporter A 100.0 4.6E-43 1E-47 362.0 26.0 218 52-282 1-232 (241)
64 cd03224 ABC_TM1139_LivF_branch 100.0 4.5E-43 9.7E-48 357.6 25.0 212 52-282 1-219 (222)
65 PRK13651 cobalt transporter AT 100.0 1E-42 2.2E-47 371.6 28.6 220 51-283 2-253 (305)
66 COG2274 SunT ABC-type bacterio 100.0 1.1E-43 2.4E-48 411.9 22.9 249 2-284 438-696 (709)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.4E-43 9.6E-48 356.8 24.3 208 52-273 1-218 (218)
68 PRK11264 putative amino-acid A 100.0 1.2E-42 2.5E-47 361.2 27.6 216 51-282 3-231 (250)
69 PRK09493 glnQ glutamine ABC tr 100.0 1.3E-42 2.9E-47 358.7 27.7 215 52-282 2-223 (240)
70 PRK15079 oligopeptide ABC tran 100.0 1.6E-42 3.5E-47 373.8 29.1 225 49-283 6-250 (331)
71 PRK13647 cbiO cobalt transport 100.0 2.1E-42 4.6E-47 364.3 29.2 216 51-282 4-225 (274)
72 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-42 2.7E-47 359.4 26.8 214 52-282 1-223 (242)
73 PRK11831 putative ABC transpor 100.0 1.8E-42 3.8E-47 364.0 28.1 216 51-282 7-231 (269)
74 PRK13646 cbiO cobalt transport 100.0 1.4E-42 2.9E-47 368.0 27.4 220 51-283 2-234 (286)
75 COG4988 CydD ABC-type transpor 100.0 2.4E-43 5.1E-48 389.2 22.2 248 1-284 285-543 (559)
76 TIGR01186 proV glycine betaine 100.0 1.2E-42 2.5E-47 377.8 27.2 205 67-283 4-218 (363)
77 TIGR02315 ABC_phnC phosphonate 100.0 7E-43 1.5E-47 361.2 24.3 218 52-282 2-233 (243)
78 cd03268 ABC_BcrA_bacitracin_re 100.0 7.6E-43 1.6E-47 352.7 24.0 205 52-277 1-208 (208)
79 PRK09536 btuD corrinoid ABC tr 100.0 1.3E-42 2.9E-47 381.8 27.6 219 51-283 3-227 (402)
80 PRK11174 cysteine/glutathione 100.0 5.5E-43 1.2E-47 406.2 26.0 246 2-283 316-571 (588)
81 PRK11248 tauB taurine transpor 100.0 3.2E-42 6.9E-47 359.3 28.3 212 52-280 2-216 (255)
82 PRK10895 lipopolysaccharide AB 100.0 1.9E-42 4.1E-47 357.8 26.2 216 51-282 3-224 (241)
83 cd03292 ABC_FtsE_transporter F 100.0 1.6E-42 3.5E-47 351.5 24.9 206 52-273 1-214 (214)
84 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.2E-42 9.1E-47 354.2 28.3 214 52-283 2-220 (236)
85 TIGR02673 FtsE cell division A 100.0 2.1E-42 4.5E-47 350.9 25.3 205 52-272 2-214 (214)
86 PRK11629 lolD lipoprotein tran 100.0 5E-42 1.1E-46 352.9 28.5 215 51-279 5-229 (233)
87 PRK11124 artP arginine transpo 100.0 3E-42 6.6E-47 356.5 26.8 214 51-281 2-227 (242)
88 COG0411 LivG ABC-type branched 100.0 4.7E-43 1E-47 350.4 19.9 220 51-284 4-239 (250)
89 cd03264 ABC_drug_resistance_li 100.0 1.9E-42 4.1E-47 350.6 24.7 207 52-277 1-211 (211)
90 COG1137 YhbG ABC-type (unclass 100.0 7.2E-44 1.6E-48 344.2 13.5 219 51-284 4-228 (243)
91 PRK13650 cbiO cobalt transport 100.0 4.1E-42 8.9E-47 363.0 27.9 218 51-283 4-228 (279)
92 COG0444 DppD ABC-type dipeptid 100.0 2.2E-42 4.7E-47 359.4 24.9 226 52-283 2-242 (316)
93 PRK13641 cbiO cobalt transport 100.0 4.9E-42 1.1E-46 363.9 28.2 220 51-283 2-233 (287)
94 TIGR00972 3a0107s01c2 phosphat 100.0 6.2E-42 1.3E-46 355.3 28.1 216 52-282 2-230 (247)
95 PRK11614 livF leucine/isoleuci 100.0 3.2E-42 7E-47 355.1 25.5 214 51-283 5-225 (237)
96 PRK10619 histidine/lysine/argi 100.0 6.2E-42 1.3E-46 357.4 27.9 216 51-282 5-239 (257)
97 cd03234 ABCG_White The White s 100.0 4.9E-42 1.1E-46 351.4 26.6 220 52-277 4-226 (226)
98 PRK11247 ssuB aliphatic sulfon 100.0 3.9E-42 8.5E-47 358.8 26.2 207 51-280 12-219 (257)
99 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.2E-42 4.9E-47 363.2 24.5 214 53-283 26-249 (269)
100 PRK13649 cbiO cobalt transport 100.0 9.6E-42 2.1E-46 360.4 29.0 220 51-283 2-233 (280)
101 TIGR03005 ectoine_ehuA ectoine 100.0 6.6E-42 1.4E-46 356.1 27.3 215 52-282 1-234 (252)
102 PRK11300 livG leucine/isoleuci 100.0 6.5E-42 1.4E-46 356.6 27.1 218 51-282 5-241 (255)
103 TIGR03411 urea_trans_UrtD urea 100.0 6.6E-42 1.4E-46 353.8 26.8 216 52-282 3-229 (242)
104 PRK13638 cbiO cobalt transport 100.0 7.9E-42 1.7E-46 359.4 27.7 215 52-283 2-224 (271)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 3.6E-42 7.9E-47 348.7 24.2 206 52-273 1-213 (213)
106 cd03226 ABC_cobalt_CbiO_domain 100.0 2.5E-42 5.5E-47 348.2 22.9 201 54-274 2-205 (205)
107 PRK13636 cbiO cobalt transport 100.0 1E-41 2.2E-46 360.8 28.6 228 51-294 5-244 (283)
108 PRK10070 glycine betaine trans 100.0 7.2E-42 1.6E-46 375.7 28.4 203 69-283 41-253 (400)
109 PRK10908 cell division protein 100.0 7.2E-42 1.6E-46 349.1 26.5 207 52-274 2-216 (222)
110 TIGR01978 sufC FeS assembly AT 100.0 7.1E-42 1.5E-46 353.5 26.5 219 52-283 1-233 (243)
111 PRK09473 oppD oligopeptide tra 100.0 1.2E-41 2.7E-46 367.0 29.2 228 50-283 11-250 (330)
112 PRK11308 dppF dipeptide transp 100.0 1.4E-41 2.9E-46 366.2 29.2 222 51-283 5-243 (327)
113 TIGR02211 LolD_lipo_ex lipopro 100.0 9E-42 2E-46 347.9 26.2 209 52-274 2-220 (221)
114 cd03235 ABC_Metallic_Cations A 100.0 2.6E-42 5.7E-47 350.0 22.0 209 54-277 2-213 (213)
115 PRK14267 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 353.5 28.1 223 51-282 4-235 (253)
116 PRK13548 hmuV hemin importer A 100.0 1.3E-41 2.7E-46 355.4 27.4 216 51-283 2-229 (258)
117 PRK10575 iron-hydroxamate tran 100.0 1E-41 2.3E-46 357.4 26.7 224 45-282 5-235 (265)
118 cd03225 ABC_cobalt_CbiO_domain 100.0 6.2E-42 1.3E-46 346.7 24.1 204 54-272 2-211 (211)
119 COG1132 MdlB ABC-type multidru 100.0 2.8E-42 6.2E-47 398.6 24.5 246 2-284 297-552 (567)
120 PRK14268 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 355.0 27.5 216 51-282 12-240 (258)
121 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-41 2.7E-46 348.3 26.3 214 52-277 2-228 (228)
122 PRK09984 phosphonate/organopho 100.0 1.2E-41 2.5E-46 356.3 26.7 220 51-281 4-239 (262)
123 PRK11231 fecE iron-dicitrate t 100.0 9.3E-42 2E-46 355.7 25.6 218 51-282 2-225 (255)
124 COG0410 LivF ABC-type branched 100.0 5.9E-42 1.3E-46 340.0 22.7 216 51-284 3-226 (237)
125 PRK14247 phosphate ABC transpo 100.0 2.1E-41 4.5E-46 351.9 27.9 223 51-282 3-232 (250)
126 PRK13639 cbiO cobalt transport 100.0 2.8E-41 6.1E-46 356.0 29.2 216 52-283 2-225 (275)
127 PRK13635 cbiO cobalt transport 100.0 2.3E-41 5E-46 357.3 28.5 217 51-283 5-228 (279)
128 PRK13644 cbiO cobalt transport 100.0 1E-41 2.2E-46 359.1 25.6 215 52-283 2-223 (274)
129 COG4175 ProV ABC-type proline/ 100.0 2.6E-42 5.6E-47 353.4 20.3 223 50-284 3-254 (386)
130 PRK11022 dppD dipeptide transp 100.0 2.5E-41 5.4E-46 364.2 28.9 227 51-283 3-242 (326)
131 TIGR03740 galliderm_ABC gallid 100.0 1.6E-41 3.5E-46 346.8 25.9 208 52-280 1-209 (223)
132 PRK14273 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 352.6 27.3 218 51-283 7-237 (254)
133 PRK14242 phosphate transporter 100.0 2.8E-41 6E-46 351.6 28.0 221 51-282 6-235 (253)
134 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-41 2.9E-46 371.1 26.7 205 67-283 35-253 (382)
135 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-41 2.3E-46 349.7 24.3 211 52-282 1-219 (230)
136 PRK13652 cbiO cobalt transport 100.0 3.5E-41 7.5E-46 355.7 28.7 217 51-283 3-226 (277)
137 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.3E-42 1.6E-46 403.4 25.8 242 2-284 420-673 (686)
138 TIGR01257 rim_protein retinal- 100.0 2.2E-39 4.8E-44 405.1 48.9 222 49-286 926-1151(2272)
139 TIGR02769 nickel_nikE nickel i 100.0 2.9E-41 6.4E-46 354.0 27.2 222 51-283 2-239 (265)
140 KOG0055 Multidrug/pheromone ex 100.0 2.3E-42 5E-47 407.0 20.6 252 1-284 315-576 (1228)
141 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-41 5.7E-46 352.5 26.3 217 52-282 2-224 (256)
142 PRK10253 iron-enterobactin tra 100.0 3.1E-41 6.7E-46 353.8 26.9 221 49-283 5-232 (265)
143 PRK14256 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 349.3 28.4 222 51-282 4-234 (252)
144 PRK14245 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 349.0 28.3 222 50-283 2-233 (250)
145 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.3E-41 4.9E-46 342.7 24.9 207 52-277 1-211 (211)
146 cd03300 ABC_PotA_N PotA is an 100.0 4.2E-41 9E-46 346.0 27.2 214 52-282 1-218 (232)
147 TIGR00968 3a0106s01 sulfate AB 100.0 3.7E-41 7.9E-46 347.5 26.7 215 52-283 1-219 (237)
148 PRK13640 cbiO cobalt transport 100.0 5.7E-41 1.2E-45 354.9 28.8 220 51-283 5-231 (282)
149 COG4525 TauB ABC-type taurine 100.0 2.2E-41 4.7E-46 325.4 23.1 220 51-285 3-225 (259)
150 PRK10584 putative ABC transpor 100.0 4.9E-41 1.1E-45 344.3 27.4 211 51-275 6-226 (228)
151 PRK14235 phosphate transporter 100.0 4.5E-41 9.7E-46 353.0 27.5 222 51-282 19-249 (267)
152 PRK10744 pstB phosphate transp 100.0 5.6E-41 1.2E-45 350.9 28.1 223 49-282 11-242 (260)
153 PRK14269 phosphate ABC transpo 100.0 5E-41 1.1E-45 348.4 27.5 222 51-282 2-228 (246)
154 PRK11176 lipid transporter ATP 100.0 1.7E-41 3.7E-46 393.4 26.5 245 2-283 310-566 (582)
155 PRK13648 cbiO cobalt transport 100.0 7.9E-41 1.7E-45 351.5 29.1 228 51-294 7-244 (269)
156 PRK14274 phosphate ABC transpo 100.0 6.1E-41 1.3E-45 350.3 27.8 221 51-282 12-241 (259)
157 PRK14237 phosphate transporter 100.0 8.8E-41 1.9E-45 350.7 29.1 223 49-282 18-249 (267)
158 COG4152 ABC-type uncharacteriz 100.0 5.6E-42 1.2E-46 340.0 18.6 220 51-287 2-222 (300)
159 PRK14250 phosphate ABC transpo 100.0 4E-41 8.8E-46 348.1 25.8 210 51-282 3-219 (241)
160 COG1123 ATPase components of v 100.0 3.4E-41 7.4E-46 373.5 26.8 227 51-284 5-244 (539)
161 PRK13632 cbiO cobalt transport 100.0 4.8E-41 1E-45 353.5 26.4 218 50-283 6-230 (271)
162 PRK13633 cobalt transporter AT 100.0 6.1E-41 1.3E-45 354.3 27.3 219 51-283 4-232 (280)
163 PRK13645 cbiO cobalt transport 100.0 5.4E-41 1.2E-45 356.3 26.9 220 51-283 6-239 (289)
164 PRK10771 thiQ thiamine transpo 100.0 6.2E-41 1.3E-45 344.6 26.4 213 52-283 2-218 (232)
165 TIGR01277 thiQ thiamine ABC tr 100.0 6.9E-41 1.5E-45 339.9 26.1 208 52-278 1-212 (213)
166 PRK15093 antimicrobial peptide 100.0 1.1E-40 2.3E-45 360.1 29.1 229 51-283 3-247 (330)
167 PRK11160 cysteine/glutathione 100.0 1.6E-41 3.5E-46 392.4 23.9 246 2-284 306-562 (574)
168 PRK14241 phosphate transporter 100.0 9.9E-41 2.1E-45 348.6 27.5 219 51-283 4-241 (258)
169 PRK14239 phosphate transporter 100.0 1.1E-40 2.4E-45 346.7 27.8 221 51-282 5-234 (252)
170 cd03299 ABC_ModC_like Archeal 100.0 1.1E-40 2.3E-45 343.7 27.2 213 52-282 1-217 (235)
171 COG4559 ABC-type hemin transpo 100.0 2.5E-41 5.4E-46 329.4 21.0 218 52-284 2-230 (259)
172 PRK10790 putative multidrug tr 100.0 6.7E-41 1.5E-45 389.1 28.7 241 2-283 310-562 (592)
173 COG4987 CydC ABC-type transpor 100.0 9.3E-42 2E-46 370.9 19.9 245 2-284 305-561 (573)
174 PRK13549 xylose transporter AT 100.0 6.6E-41 1.4E-45 382.0 27.8 220 51-282 5-230 (506)
175 PRK11144 modC molybdate transp 100.0 6.8E-41 1.5E-45 364.5 26.5 206 52-283 2-217 (352)
176 PRK14270 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 346.1 27.5 219 50-283 3-234 (251)
177 PRK14244 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 346.5 27.1 221 52-282 6-235 (251)
178 PRK14262 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 345.8 27.4 222 51-283 3-233 (250)
179 PRK14240 phosphate transporter 100.0 1.7E-40 3.7E-45 345.1 28.1 221 51-282 3-232 (250)
180 PRK15112 antimicrobial peptide 100.0 9.8E-41 2.1E-45 350.4 26.5 221 51-282 4-237 (267)
181 TIGR03375 type_I_sec_LssB type 100.0 3.6E-41 7.7E-46 398.1 25.8 247 2-284 430-688 (694)
182 TIGR02142 modC_ABC molybdenum 100.0 8.3E-41 1.8E-45 364.3 26.7 207 56-283 4-220 (354)
183 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.7E-41 5.8E-46 400.2 24.3 251 2-284 438-700 (710)
184 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-41 4.7E-46 400.2 23.4 245 2-284 446-702 (711)
185 TIGR01184 ntrCD nitrate transp 100.0 6.7E-41 1.5E-45 344.1 24.1 199 72-280 1-200 (230)
186 PRK14272 phosphate ABC transpo 100.0 2.5E-40 5.4E-45 344.1 28.4 220 50-283 3-235 (252)
187 cd03267 ABC_NatA_like Similar 100.0 8.8E-41 1.9E-45 344.5 24.7 199 67-277 32-236 (236)
188 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-40 2.3E-45 335.9 24.8 195 51-277 3-202 (202)
189 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-41 5.6E-46 400.1 23.7 246 2-284 440-697 (708)
190 PRK10762 D-ribose transporter 100.0 1E-40 2.2E-45 380.0 27.7 218 51-282 4-228 (501)
191 COG4181 Predicted ABC-type tra 100.0 1.6E-41 3.4E-46 320.2 17.2 211 51-275 6-226 (228)
192 PRK14248 phosphate ABC transpo 100.0 2.3E-40 5.1E-45 347.7 28.0 220 48-282 18-250 (268)
193 PRK11701 phnK phosphonate C-P 100.0 2.3E-40 5E-45 345.8 27.2 216 51-282 6-239 (258)
194 PRK14259 phosphate ABC transpo 100.0 1.7E-40 3.6E-45 349.0 26.1 222 49-283 11-252 (269)
195 PRK13547 hmuV hemin importer A 100.0 1.8E-40 3.8E-45 349.1 26.0 220 52-282 2-242 (272)
196 PRK14253 phosphate ABC transpo 100.0 2.5E-40 5.4E-45 343.6 26.6 221 51-282 3-231 (249)
197 PRK14255 phosphate ABC transpo 100.0 4.7E-40 1E-44 342.2 28.5 222 50-282 4-234 (252)
198 PRK09700 D-allose transporter 100.0 1.4E-40 3E-45 379.8 26.8 218 51-282 5-232 (510)
199 PRK14261 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 343.0 27.7 221 51-282 6-235 (253)
200 cd03297 ABC_ModC_molybdenum_tr 100.0 2.1E-40 4.6E-45 336.5 25.0 200 56-277 5-214 (214)
201 PRK14271 phosphate ABC transpo 100.0 5.2E-40 1.1E-44 346.5 28.8 223 50-283 20-250 (276)
202 PRK13642 cbiO cobalt transport 100.0 4.4E-40 9.5E-45 347.3 28.2 218 51-283 4-228 (277)
203 TIGR01842 type_I_sec_PrtD type 100.0 1.4E-40 3.1E-45 382.5 26.3 246 2-283 286-541 (544)
204 PRK14249 phosphate ABC transpo 100.0 4.9E-40 1.1E-44 341.9 27.7 221 51-282 4-233 (251)
205 PRK14260 phosphate ABC transpo 100.0 4.7E-40 1E-44 343.7 27.1 217 51-282 7-241 (259)
206 PRK14236 phosphate transporter 100.0 5.3E-40 1.2E-44 345.7 27.6 221 51-282 25-254 (272)
207 PRK14251 phosphate ABC transpo 100.0 5.9E-40 1.3E-44 341.2 27.5 217 51-282 4-233 (251)
208 PRK14258 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 343.0 28.0 223 51-283 7-244 (261)
209 KOG0055 Multidrug/pheromone ex 100.0 5.7E-41 1.2E-45 395.3 22.2 251 2-284 953-1213(1228)
210 KOG0057 Mitochondrial Fe/S clu 100.0 4.4E-41 9.6E-46 365.8 19.6 215 50-284 350-574 (591)
211 PRK15439 autoinducer 2 ABC tra 100.0 3E-40 6.5E-45 376.8 27.2 211 51-282 11-227 (510)
212 PRK14238 phosphate transporter 100.0 7.5E-40 1.6E-44 344.4 28.1 222 50-282 23-253 (271)
213 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-40 5.3E-45 384.0 26.3 245 2-283 301-557 (588)
214 TIGR03608 L_ocin_972_ABC putat 100.0 2.3E-40 5.1E-45 333.8 22.8 197 54-268 1-206 (206)
215 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-39 2.6E-44 338.9 28.6 219 51-282 7-239 (252)
216 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-40 3.3E-45 342.6 21.5 212 52-283 1-224 (237)
217 PRK14275 phosphate ABC transpo 100.0 1E-39 2.2E-44 346.0 28.1 219 49-282 37-268 (286)
218 PRK14265 phosphate ABC transpo 100.0 8.6E-40 1.9E-44 344.5 27.3 225 46-283 15-257 (274)
219 COG1123 ATPase components of v 100.0 3.5E-40 7.7E-45 365.5 25.5 226 49-284 278-519 (539)
220 PRK10418 nikD nickel transport 100.0 1E-39 2.2E-44 340.2 27.5 215 51-282 4-228 (254)
221 PRK14257 phosphate ABC transpo 100.0 9.7E-40 2.1E-44 351.9 28.2 224 50-283 79-312 (329)
222 TIGR02982 heterocyst_DevA ABC 100.0 6.1E-40 1.3E-44 334.6 25.2 209 52-273 2-219 (220)
223 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-39 2.5E-44 339.3 27.0 216 51-282 3-236 (253)
224 PRK14263 phosphate ABC transpo 100.0 1.5E-39 3.3E-44 340.3 27.8 221 49-282 6-243 (261)
225 cd03213 ABCG_EPDR ABCG transpo 100.0 9.3E-40 2E-44 327.1 24.9 188 50-277 2-194 (194)
226 TIGR02770 nickel_nikD nickel i 100.0 6.8E-40 1.5E-44 336.5 24.5 204 71-283 1-214 (230)
227 TIGR02633 xylG D-xylose ABC tr 100.0 8.1E-40 1.7E-44 372.7 27.7 218 52-281 2-227 (500)
228 PRK10419 nikE nickel transport 100.0 1.6E-39 3.4E-44 341.5 27.3 222 51-283 3-240 (268)
229 TIGR02203 MsbA_lipidA lipid A 100.0 3.5E-40 7.6E-45 381.5 24.5 245 2-283 299-555 (571)
230 PTZ00265 multidrug resistance 100.0 1.5E-40 3.3E-45 415.0 23.0 257 2-283 1128-1451(1466)
231 TIGR01846 type_I_sec_HlyB type 100.0 4.2E-40 9.2E-45 388.8 25.2 246 2-284 423-680 (694)
232 PRK10982 galactose/methyl gala 100.0 7.2E-40 1.6E-44 372.3 26.2 214 55-282 2-221 (491)
233 PRK14266 phosphate ABC transpo 100.0 2.3E-39 4.9E-44 336.6 27.4 221 51-282 3-232 (250)
234 PRK14254 phosphate ABC transpo 100.0 2.1E-39 4.5E-44 343.3 27.5 216 50-282 38-267 (285)
235 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-39 2.4E-44 325.9 24.0 188 51-277 3-192 (192)
236 PRK11288 araG L-arabinose tran 100.0 1.6E-39 3.5E-44 370.2 28.1 215 51-279 4-224 (501)
237 PRK15056 manganese/iron transp 100.0 1.4E-39 3E-44 342.6 25.5 218 51-282 6-228 (272)
238 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-40 1.1E-44 338.1 21.5 213 52-284 1-225 (234)
239 PRK10261 glutathione transport 100.0 1.9E-39 4E-44 378.0 28.8 223 50-283 312-552 (623)
240 COG4618 ArpD ABC-type protease 100.0 4.4E-40 9.6E-45 354.8 21.3 254 2-286 304-562 (580)
241 PRK14246 phosphate ABC transpo 100.0 2.2E-39 4.8E-44 338.3 25.8 220 51-283 10-240 (257)
242 PRK14264 phosphate ABC transpo 100.0 4.3E-39 9.2E-44 344.2 28.3 225 49-282 43-287 (305)
243 PRK13543 cytochrome c biogenes 100.0 2.3E-39 5E-44 329.0 24.9 201 50-270 10-212 (214)
244 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.7E-40 1.2E-44 338.5 20.7 214 52-284 1-226 (238)
245 COG1129 MglA ABC-type sugar tr 100.0 1.6E-39 3.4E-44 358.2 25.3 216 50-279 7-229 (500)
246 PRK14243 phosphate transporter 100.0 2.8E-39 6.1E-44 338.8 26.2 220 51-283 10-247 (264)
247 PRK10789 putative multidrug tr 100.0 9.1E-40 2E-44 377.6 24.6 244 2-283 282-537 (569)
248 TIGR01192 chvA glucan exporter 100.0 1.7E-39 3.6E-44 376.4 26.3 248 2-284 301-558 (585)
249 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-39 3.6E-44 332.5 22.7 202 52-277 23-224 (224)
250 PRK13538 cytochrome c biogenes 100.0 2.3E-39 5.1E-44 326.6 23.5 197 52-268 2-202 (204)
251 PRK09580 sufC cysteine desulfu 100.0 6.1E-39 1.3E-43 332.8 27.2 219 52-283 2-234 (248)
252 cd03254 ABCC_Glucan_exporter_l 100.0 9.2E-40 2E-44 335.0 20.7 212 51-283 2-225 (229)
253 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-39 3.2E-44 331.4 22.1 207 52-277 3-220 (220)
254 PRK14252 phosphate ABC transpo 100.0 6.4E-39 1.4E-43 336.3 27.4 222 49-282 14-247 (265)
255 cd03230 ABC_DR_subfamily_A Thi 100.0 2.1E-39 4.6E-44 318.5 22.3 169 52-273 1-173 (173)
256 PRK03695 vitamin B12-transport 100.0 2.6E-39 5.7E-44 336.0 23.8 198 71-282 11-220 (248)
257 PRK13546 teichoic acids export 100.0 1.5E-38 3.2E-43 333.1 29.4 215 50-284 3-232 (264)
258 TIGR03269 met_CoM_red_A2 methy 100.0 3.2E-39 6.9E-44 369.4 26.7 217 52-285 1-259 (520)
259 PRK10247 putative ABC transpor 100.0 2.7E-39 5.9E-44 331.0 23.0 207 51-278 7-221 (225)
260 TIGR01257 rim_protein retinal- 100.0 3.1E-39 6.7E-44 403.8 28.1 223 50-287 1936-2162(2272)
261 COG4598 HisP ABC-type histidin 100.0 3.9E-40 8.4E-45 312.8 15.3 217 51-283 6-240 (256)
262 TIGR02204 MsbA_rel ABC transpo 100.0 2.2E-39 4.9E-44 375.2 25.0 248 2-283 303-562 (576)
263 cd03231 ABC_CcmA_heme_exporter 100.0 3.6E-39 7.9E-44 324.5 22.9 194 52-268 1-198 (201)
264 TIGR03269 met_CoM_red_A2 methy 100.0 4.3E-39 9.3E-44 368.4 26.6 220 51-283 279-516 (520)
265 PRK10261 glutathione transport 100.0 3.5E-39 7.5E-44 375.8 26.1 220 51-282 12-256 (623)
266 TIGR02868 CydC thiol reductant 100.0 8.1E-40 1.8E-44 375.2 20.2 220 2-254 299-529 (529)
267 PRK15134 microcin C ABC transp 100.0 7.8E-39 1.7E-43 366.9 27.8 224 51-283 5-245 (529)
268 PRK15134 microcin C ABC transp 100.0 5.1E-39 1.1E-43 368.5 25.6 222 51-283 275-514 (529)
269 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.8E-39 1.7E-43 321.9 23.8 186 52-286 1-195 (200)
270 COG4604 CeuD ABC-type enteroch 100.0 2.1E-40 4.5E-45 319.3 11.5 218 52-284 2-225 (252)
271 PRK09544 znuC high-affinity zi 100.0 7.7E-39 1.7E-43 333.0 24.0 201 51-282 4-207 (251)
272 cd03253 ABCC_ATM1_transporter 100.0 3.2E-39 6.9E-44 332.4 20.7 211 52-283 1-223 (236)
273 KOG0056 Heavy metal exporter H 100.0 4.8E-40 1E-44 350.2 14.2 247 5-284 507-761 (790)
274 cd03229 ABC_Class3 This class 100.0 7.9E-39 1.7E-43 316.0 21.8 170 52-272 1-178 (178)
275 TIGR02324 CP_lyasePhnL phospho 100.0 1.9E-38 4E-43 324.3 25.3 206 52-269 2-223 (224)
276 PRK13539 cytochrome c biogenes 100.0 1.4E-38 3E-43 321.8 23.7 197 51-270 2-200 (207)
277 PRK13549 xylose transporter AT 100.0 8.6E-39 1.9E-43 364.7 25.0 221 51-282 259-492 (506)
278 TIGR01189 ccmA heme ABC export 100.0 1.1E-38 2.4E-43 320.1 22.7 193 52-267 1-197 (198)
279 COG4161 ArtP ABC-type arginine 100.0 4E-39 8.7E-44 301.0 17.8 214 51-280 2-226 (242)
280 PRK09700 D-allose transporter 100.0 1.2E-38 2.7E-43 363.7 25.0 213 51-279 265-493 (510)
281 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-38 3.1E-43 334.7 23.4 212 51-284 2-225 (275)
282 cd03244 ABCC_MRP_domain2 Domai 100.0 1.3E-38 2.7E-43 324.8 22.2 207 51-278 2-220 (221)
283 cd03215 ABC_Carb_Monos_II This 100.0 2E-38 4.2E-43 314.3 22.4 170 51-273 4-182 (182)
284 COG4148 ModC ABC-type molybdat 100.0 1.5E-39 3.3E-44 327.9 14.6 193 74-284 16-218 (352)
285 PLN03232 ABC transporter C fam 100.0 1.3E-38 2.8E-43 400.7 26.2 249 2-284 1198-1458(1495)
286 TIGR02857 CydD thiol reductant 100.0 7.7E-39 1.7E-43 367.1 22.1 229 2-268 289-529 (529)
287 PLN03130 ABC transporter C fam 100.0 1.8E-38 3.8E-43 399.9 27.1 249 2-284 1201-1461(1622)
288 PRK10938 putative molybdenum t 100.0 1.6E-38 3.4E-43 361.2 23.4 207 51-282 3-222 (490)
289 PRK13545 tagH teichoic acids e 100.0 8.2E-38 1.8E-42 348.0 27.9 213 51-285 21-233 (549)
290 cd03248 ABCC_TAP TAP, the Tran 100.0 9.8E-39 2.1E-43 326.8 18.8 210 50-273 10-226 (226)
291 cd03247 ABCC_cytochrome_bd The 100.0 2.7E-38 5.8E-43 312.1 20.9 174 52-277 1-178 (178)
292 TIGR03771 anch_rpt_ABC anchore 100.0 3E-38 6.6E-43 322.9 22.0 196 77-282 1-199 (223)
293 cd03246 ABCC_Protease_Secretio 100.0 3.3E-38 7.2E-43 310.1 21.2 168 52-273 1-173 (173)
294 TIGR02633 xylG D-xylose ABC tr 100.0 4.3E-38 9.4E-43 358.5 24.9 221 50-280 256-488 (500)
295 TIGR01166 cbiO cobalt transpor 100.0 3.6E-38 7.9E-43 314.2 21.2 176 68-255 4-188 (190)
296 PRK13540 cytochrome c biogenes 100.0 5.5E-38 1.2E-42 315.6 22.6 192 52-266 2-197 (200)
297 COG4172 ABC-type uncharacteriz 100.0 1.4E-37 3E-42 326.7 26.4 227 48-284 273-516 (534)
298 COG0396 sufC Cysteine desulfur 100.0 1.9E-37 4.2E-42 306.5 25.3 232 50-293 2-242 (251)
299 cd03288 ABCC_SUR2 The SUR doma 100.0 5.5E-38 1.2E-42 327.7 22.0 212 51-283 19-242 (257)
300 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-37 2.9E-42 314.3 24.0 197 51-279 6-207 (207)
301 TIGR00957 MRP_assoc_pro multi 100.0 7.3E-38 1.6E-42 394.3 27.3 249 2-284 1248-1508(1522)
302 PRK10762 D-ribose transporter 100.0 8E-38 1.7E-42 356.3 25.1 213 51-282 257-482 (501)
303 COG3845 ABC-type uncharacteriz 100.0 9.3E-38 2E-42 337.6 23.9 214 51-278 4-223 (501)
304 PRK11288 araG L-arabinose tran 100.0 7.2E-38 1.6E-42 356.7 23.6 214 51-282 257-483 (501)
305 cd03250 ABCC_MRP_domain1 Domai 100.0 8.3E-38 1.8E-42 315.1 21.1 196 52-272 1-204 (204)
306 PRK10522 multidrug transporter 100.0 1.8E-37 3.8E-42 357.1 26.5 232 2-276 291-530 (547)
307 PTZ00265 multidrug resistance 100.0 1.4E-37 2.9E-42 388.6 26.8 244 2-271 350-655 (1466)
308 cd03214 ABC_Iron-Siderophores_ 100.0 9.1E-38 2E-42 308.9 18.7 174 53-277 1-180 (180)
309 PRK15439 autoinducer 2 ABC tra 100.0 2.5E-37 5.4E-42 352.8 24.8 212 51-281 268-489 (510)
310 TIGR01187 potA spermidine/putr 100.0 2.3E-37 5E-42 333.5 22.9 185 87-283 1-189 (325)
311 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.4E-37 9.6E-42 354.2 26.4 209 50-276 336-551 (555)
312 PRK10535 macrolide transporter 100.0 3.7E-36 8E-41 351.7 33.9 218 51-282 4-230 (648)
313 PTZ00243 ABC transporter; Prov 100.0 5.6E-37 1.2E-41 385.7 28.8 214 50-284 1307-1533(1560)
314 cd03216 ABC_Carb_Monos_I This 100.0 7.7E-37 1.7E-41 297.6 22.2 156 52-275 1-162 (163)
315 cd03290 ABCC_SUR1_N The SUR do 100.0 6.5E-37 1.4E-41 311.8 22.3 199 53-272 2-218 (218)
316 cd03228 ABCC_MRP_Like The MRP 100.0 5.9E-37 1.3E-41 300.6 20.5 166 52-272 1-171 (171)
317 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.9E-36 6.3E-41 318.3 27.2 202 49-283 37-246 (282)
318 TIGR01271 CFTR_protein cystic 100.0 1.4E-36 2.9E-41 381.9 28.0 258 2-284 1167-1440(1490)
319 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-36 2.3E-41 297.6 21.0 164 52-272 1-164 (166)
320 PRK15064 ABC transporter ATP-b 100.0 1.3E-36 2.8E-41 348.7 24.4 209 52-283 2-241 (530)
321 PRK13541 cytochrome c biogenes 100.0 1.7E-36 3.7E-41 303.6 21.9 190 52-265 2-192 (195)
322 PRK11819 putative ABC transpor 100.0 2.6E-36 5.6E-41 347.8 25.7 210 50-282 5-248 (556)
323 PRK15177 Vi polysaccharide exp 100.0 1.7E-36 3.8E-41 307.8 20.9 195 70-288 1-196 (213)
324 PRK10982 galactose/methyl gala 100.0 2.6E-36 5.6E-41 343.1 23.3 215 50-280 249-476 (491)
325 COG4619 ABC-type uncharacteriz 100.0 1.2E-37 2.6E-42 293.1 9.6 192 67-273 14-212 (223)
326 COG4172 ABC-type uncharacteriz 100.0 4.7E-36 1E-40 315.3 22.1 227 51-283 6-246 (534)
327 PRK15064 ABC transporter ATP-b 100.0 5E-36 1.1E-40 343.8 23.9 203 50-283 318-524 (530)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7E-36 1.5E-40 344.0 25.0 212 50-284 3-248 (552)
329 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-35 2.4E-40 308.3 23.9 189 70-281 8-204 (246)
330 PRK10938 putative molybdenum t 100.0 3.9E-36 8.5E-41 341.6 22.3 214 50-277 259-485 (490)
331 COG4608 AppF ABC-type oligopep 100.0 8.1E-36 1.8E-40 304.3 20.6 190 51-284 4-199 (268)
332 COG1119 ModF ABC-type molybden 100.0 2.4E-36 5.1E-41 302.2 16.4 217 48-278 28-256 (257)
333 PLN03232 ABC transporter C fam 100.0 1.4E-35 3E-40 373.3 25.6 237 2-283 583-827 (1495)
334 COG4674 Uncharacterized ABC-ty 100.0 4.1E-36 8.9E-41 289.2 16.0 219 50-283 4-234 (249)
335 COG5265 ATM1 ABC-type transpor 100.0 2.8E-36 6E-41 319.1 15.1 248 3-284 229-486 (497)
336 PLN03130 ABC transporter C fam 100.0 2.4E-35 5.3E-40 371.5 26.4 236 2-283 583-827 (1622)
337 TIGR00954 3a01203 Peroxysomal 100.0 1.8E-35 3.9E-40 346.3 22.3 198 51-269 451-652 (659)
338 PRK11819 putative ABC transpor 100.0 5.1E-35 1.1E-39 337.0 25.4 203 50-280 323-529 (556)
339 PRK13409 putative ATPase RIL; 100.0 6.6E-35 1.4E-39 336.3 24.6 199 50-280 339-538 (590)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.7E-35 1.7E-39 335.4 25.0 202 50-279 321-526 (552)
341 COG4586 ABC-type uncharacteriz 100.0 1.4E-35 3E-40 298.9 16.0 207 69-287 37-249 (325)
342 cd03236 ABC_RNaseL_inhibitor_d 100.0 7.4E-35 1.6E-39 303.5 19.6 198 56-277 5-220 (255)
343 COG1101 PhnK ABC-type uncharac 100.0 9.5E-35 2.1E-39 284.0 17.6 216 52-276 2-230 (263)
344 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-34 6.1E-39 362.0 26.2 243 2-283 602-849 (1522)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.8E-34 6E-39 274.0 19.8 144 52-272 1-144 (144)
346 PRK10636 putative ABC transpor 100.0 2.9E-34 6.2E-39 335.0 24.2 202 50-283 311-516 (638)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 4.8E-34 1E-38 281.0 20.4 156 55-283 4-162 (177)
348 COG4136 ABC-type uncharacteriz 100.0 1.5E-34 3.3E-39 267.4 15.1 190 51-254 2-195 (213)
349 PRK10636 putative ABC transpor 100.0 8.4E-34 1.8E-38 331.1 24.2 206 52-281 2-233 (638)
350 PRK11147 ABC transporter ATPas 100.0 8.9E-34 1.9E-38 331.3 24.0 204 50-281 318-525 (635)
351 COG1134 TagH ABC-type polysacc 100.0 2.8E-33 6E-38 280.6 23.6 219 51-288 3-240 (249)
352 cd03238 ABC_UvrA The excision 100.0 1.1E-33 2.3E-38 278.4 20.1 158 67-273 6-166 (176)
353 PLN03073 ABC transporter F fam 100.0 4.5E-33 9.8E-38 326.7 25.8 205 50-283 507-713 (718)
354 PRK11147 ABC transporter ATPas 100.0 4.8E-33 1E-37 325.1 24.8 205 51-281 3-240 (635)
355 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-33 2.8E-38 339.3 20.0 223 50-288 563-791 (885)
356 TIGR01271 CFTR_protein cystic 100.0 6.7E-33 1.4E-37 348.6 26.8 191 69-283 439-635 (1490)
357 COG4167 SapF ABC-type antimicr 100.0 2.5E-33 5.5E-38 267.0 17.1 222 51-283 4-238 (267)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.4E-32 7.3E-37 263.0 20.9 151 54-272 2-157 (157)
359 COG4133 CcmA ABC-type transpor 100.0 7.4E-33 1.6E-37 266.2 15.3 187 51-256 2-192 (209)
360 COG4107 PhnK ABC-type phosphon 100.0 1.2E-32 2.6E-37 260.5 14.8 215 51-284 6-241 (258)
361 PRK13409 putative ATPase RIL; 100.0 1.5E-32 3.3E-37 316.7 18.7 187 57-271 79-287 (590)
362 KOG0054 Multidrug resistance-a 100.0 2.3E-31 5E-36 321.0 25.4 239 2-283 485-730 (1381)
363 COG0488 Uup ATPase components 100.0 8E-32 1.7E-36 304.1 19.9 206 51-280 3-236 (530)
364 KOG0054 Multidrug resistance-a 100.0 4.7E-31 1E-35 318.3 23.4 247 4-284 1104-1362(1381)
365 PTZ00243 ABC transporter; Prov 100.0 3.4E-31 7.4E-36 333.6 22.8 193 68-283 672-869 (1560)
366 PLN03073 ABC transporter F fam 100.0 7.8E-31 1.7E-35 307.9 18.6 215 48-281 174-428 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 4.5E-30 9.7E-35 263.2 21.7 190 67-277 6-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 1.8E-30 4E-35 245.0 12.7 208 50-269 3-226 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 4.3E-30 9.3E-35 241.9 13.0 132 72-223 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 7.3E-29 1.6E-33 258.1 20.4 195 69-279 8-261 (261)
371 COG0488 Uup ATPase components 100.0 1.7E-27 3.8E-32 268.9 21.7 203 48-282 318-523 (530)
372 COG4138 BtuD ABC-type cobalami 100.0 3.3E-29 7.2E-34 237.5 6.1 206 51-283 3-220 (248)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 3.7E-28 8.1E-33 243.8 13.9 164 73-269 14-189 (197)
374 COG1129 MglA ABC-type sugar tr 100.0 4.9E-27 1.1E-31 259.4 22.9 214 49-280 261-486 (500)
375 COG4178 ABC-type uncharacteriz 99.9 4.6E-26 1E-30 256.2 18.3 197 49-269 390-587 (604)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.1E-26 4.5E-31 238.2 13.5 183 68-269 14-234 (243)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.4E-26 3.1E-31 240.9 11.8 182 82-269 25-242 (251)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.7E-27 5.9E-32 240.2 3.7 188 51-270 5-204 (212)
379 COG4615 PvdE ABC-type sideroph 99.9 2.1E-26 4.5E-31 241.9 10.3 234 2-277 291-530 (546)
380 PRK00635 excinuclease ABC subu 99.9 6.6E-25 1.4E-29 271.7 24.1 137 139-283 759-905 (1809)
381 cd03279 ABC_sbcCD SbcCD and ot 99.9 8.1E-26 1.8E-30 229.6 12.8 192 51-273 5-211 (213)
382 COG3845 ABC-type uncharacteriz 99.9 1.4E-24 3.1E-29 235.5 21.5 222 48-282 254-490 (501)
383 cd03240 ABC_Rad50 The catalyti 99.9 3.7E-25 8.1E-30 223.3 13.4 165 74-271 15-199 (204)
384 PRK00349 uvrA excinuclease ABC 99.9 1.5E-23 3.2E-28 250.3 22.6 125 143-283 792-926 (943)
385 TIGR00630 uvra excinuclease AB 99.9 4.3E-23 9.3E-28 246.0 23.2 125 142-282 789-923 (924)
386 COG4170 SapD ABC-type antimicr 99.9 3.6E-24 7.7E-29 208.5 11.0 229 52-284 4-248 (330)
387 KOG0927 Predicted transporter 99.9 2.1E-23 4.7E-28 227.2 13.8 214 49-281 73-306 (614)
388 COG1245 Predicted ATPase, RNas 99.9 1.1E-22 2.5E-27 217.3 16.7 190 49-269 340-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.1E-22 2.5E-27 204.3 14.0 168 72-272 12-192 (198)
390 KOG0927 Predicted transporter 99.9 3.2E-23 7E-28 225.8 10.5 202 49-279 387-591 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 8.7E-23 1.9E-27 212.1 10.4 179 83-272 23-236 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 1.7E-21 3.7E-26 213.9 17.0 204 50-270 432-641 (659)
393 KOG0062 ATPase component of AB 99.9 1.1E-21 2.4E-26 212.9 9.5 201 48-279 77-280 (582)
394 KOG2355 Predicted ABC-type tra 99.8 2E-20 4.4E-25 182.1 16.3 211 50-285 12-238 (291)
395 KOG0066 eIF2-interacting prote 99.8 7.2E-21 1.6E-25 201.7 13.3 191 49-270 584-776 (807)
396 PF01061 ABC2_membrane: ABC-2 99.8 3.3E-22 7.2E-27 199.8 0.9 208 384-596 1-210 (210)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.2E-20 2.5E-25 190.0 11.4 146 72-277 17-172 (200)
398 KOG0062 ATPase component of AB 99.8 5.7E-20 1.2E-24 199.6 16.3 198 49-275 360-559 (582)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.1E-20 6.6E-25 188.7 13.4 81 191-272 123-211 (213)
400 COG1245 Predicted ATPase, RNas 99.8 3.3E-20 7.2E-25 198.6 11.2 168 79-270 97-288 (591)
401 cd03239 ABC_SMC_head The struc 99.8 6.7E-19 1.5E-23 174.0 16.0 74 195-270 95-172 (178)
402 COG0178 UvrA Excinuclease ATPa 99.8 1.1E-18 2.3E-23 198.2 19.6 127 143-284 784-919 (935)
403 COG2401 ABC-type ATPase fused 99.8 4.5E-19 9.8E-24 187.8 14.4 187 67-274 394-588 (593)
404 PRK00635 excinuclease ABC subu 99.8 2.2E-18 4.8E-23 214.3 22.1 128 142-284 1660-1796(1809)
405 cd03283 ABC_MutS-like MutS-lik 99.8 3.3E-19 7.1E-24 179.3 10.2 147 69-268 14-163 (199)
406 KOG0064 Peroxisomal long-chain 99.8 4.3E-19 9.3E-24 192.5 11.2 192 51-266 481-679 (728)
407 cd03241 ABC_RecN RecN ATPase i 99.8 6.1E-18 1.3E-22 178.7 15.7 76 194-272 170-249 (276)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 7.5E-19 1.6E-23 179.6 8.0 153 68-278 16-175 (222)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 6.2E-18 1.4E-22 164.5 11.7 75 194-270 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 3.4E-17 7.3E-22 196.2 15.0 136 140-283 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 5.5E-17 1.2E-21 194.0 15.6 135 141-283 433-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 2.2E-17 4.8E-22 166.4 6.9 155 74-281 21-176 (202)
413 cd03242 ABC_RecF RecF is a rec 99.7 6.4E-16 1.4E-20 162.8 16.9 77 192-273 181-269 (270)
414 KOG0066 eIF2-interacting prote 99.7 6.8E-17 1.5E-21 171.7 8.3 214 49-278 262-493 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 4.4E-16 9.5E-21 157.1 8.5 142 68-262 15-157 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 3.2E-15 7E-20 152.3 11.4 158 68-283 17-180 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.5 3.8E-14 8.2E-19 151.3 12.8 178 68-269 348-531 (592)
418 TIGR02858 spore_III_AA stage I 99.5 2.1E-14 4.6E-19 150.5 10.5 137 83-281 112-266 (270)
419 smart00534 MUTSac ATPase domai 99.5 4.1E-14 8.9E-19 140.7 5.3 80 193-275 60-141 (185)
420 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.2E-13 2.5E-18 140.9 7.1 88 168-269 121-212 (220)
421 PRK00064 recF recombination pr 99.4 2.7E-12 5.9E-17 140.7 18.2 77 193-273 272-359 (361)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.8E-12 3.9E-17 131.8 11.9 129 70-254 17-154 (213)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 7.5E-13 1.6E-17 119.1 6.5 72 69-152 2-78 (107)
424 TIGR01069 mutS2 MutS2 family p 99.4 2E-12 4.4E-17 153.4 11.8 130 75-255 314-446 (771)
425 KOG0063 RNAse L inhibitor, ABC 99.4 1.5E-12 3.2E-17 139.2 9.1 171 80-269 98-287 (592)
426 TIGR01247 drrB daunorubicin re 99.3 4.7E-10 1E-14 115.6 22.7 226 392-649 1-234 (236)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1E-11 2.2E-16 126.9 9.8 138 69-262 18-160 (222)
428 cd01128 rho_factor Transcripti 99.3 1.4E-11 3.1E-16 127.8 9.9 172 77-273 11-211 (249)
429 PTZ00132 GTP-binding nuclear p 99.3 7.3E-12 1.6E-16 127.2 7.1 45 198-242 156-205 (215)
430 TIGR00634 recN DNA repair prot 99.3 1.3E-11 2.7E-16 143.1 9.9 77 193-272 439-519 (563)
431 PRK07721 fliI flagellum-specif 99.2 1.9E-10 4.1E-15 128.3 17.2 173 68-281 145-340 (438)
432 PRK10869 recombination and rep 99.2 2.8E-11 6.1E-16 139.3 10.7 76 193-271 429-508 (553)
433 PRK08533 flagellar accessory p 99.2 8.6E-11 1.9E-15 121.0 13.1 150 78-269 20-184 (230)
434 TIGR00618 sbcc exonuclease Sbc 99.2 4.3E-11 9.3E-16 148.1 11.4 80 191-271 947-1036(1042)
435 COG0178 UvrA Excinuclease ATPa 99.2 1.6E-10 3.5E-15 132.5 14.6 137 140-284 426-577 (935)
436 PRK00409 recombination and DNA 99.2 2.9E-11 6.4E-16 144.0 8.6 81 193-276 389-470 (782)
437 cd01124 KaiC KaiC is a circadi 99.2 2.2E-10 4.9E-15 113.2 13.6 145 85-269 2-163 (187)
438 PF13304 AAA_21: AAA domain; P 99.2 5.7E-11 1.2E-15 120.5 9.4 64 192-255 234-300 (303)
439 PHA02562 46 endonuclease subun 99.2 3.4E-11 7.4E-16 139.6 8.2 79 191-273 465-555 (562)
440 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 8.9E-10 1.9E-14 111.3 17.5 151 473-655 57-207 (208)
441 TIGR01291 nodJ ABC-2 type tran 99.2 7.7E-09 1.7E-13 108.1 23.8 232 386-652 7-248 (253)
442 TIGR00025 Mtu_efflux ABC trans 99.1 8.4E-09 1.8E-13 106.2 23.0 220 398-650 2-227 (232)
443 cd03286 ABC_MSH6_euk MutS6 hom 99.1 2E-10 4.3E-15 117.2 10.7 134 68-254 16-153 (218)
444 PRK13695 putative NTPase; Prov 99.1 3.1E-11 6.6E-16 118.8 3.5 80 193-276 77-156 (174)
445 TIGR03861 phenyl_ABC_PedC alco 99.1 4.7E-08 1E-12 101.9 24.9 209 383-593 1-219 (253)
446 TIGR02788 VirB11 P-type DNA tr 99.0 5.9E-10 1.3E-14 119.8 9.2 142 75-283 137-280 (308)
447 PRK13830 conjugal transfer pro 99.0 4.2E-09 9E-14 126.9 16.9 69 210-279 650-728 (818)
448 PRK03918 chromosome segregatio 99.0 6.9E-10 1.5E-14 135.5 10.2 77 191-269 785-867 (880)
449 COG3910 Predicted ATPase [Gene 99.0 5.4E-09 1.2E-13 101.6 13.5 63 192-255 127-189 (233)
450 cd01120 RecA-like_NTPases RecA 99.0 2.1E-09 4.6E-14 102.6 10.6 63 195-257 68-140 (165)
451 PRK10246 exonuclease subunit S 99.0 1.4E-09 3E-14 134.3 11.3 79 191-270 946-1032(1047)
452 PRK06793 fliI flagellum-specif 99.0 1.6E-09 3.5E-14 120.1 10.6 169 52-279 131-306 (432)
453 TIGR00606 rad50 rad50. This fa 99.0 1.5E-09 3.2E-14 137.2 11.5 76 184-262 1191-1277(1311)
454 PRK15066 inner membrane transp 98.9 2.1E-07 4.5E-12 97.4 23.9 244 382-658 6-256 (257)
455 PRK06067 flagellar accessory p 98.9 1.2E-08 2.6E-13 105.1 13.7 162 71-270 13-187 (234)
456 PRK01156 chromosome segregatio 98.9 3.8E-09 8.3E-14 129.2 10.9 77 191-269 798-883 (895)
457 cd01131 PilT Pilus retraction 98.8 1.9E-08 4.1E-13 101.3 10.6 57 204-269 66-122 (198)
458 TIGR02168 SMC_prok_B chromosom 98.8 6.2E-09 1.3E-13 130.4 7.9 76 191-269 1086-1165(1179)
459 cd01125 repA Hexameric Replica 98.8 4.2E-08 9E-13 101.6 11.8 136 82-255 1-160 (239)
460 TIGR03238 dnd_assoc_3 dnd syst 98.8 6.5E-09 1.4E-13 115.2 5.0 50 69-123 19-69 (504)
461 PRK02224 chromosome segregatio 98.7 2.9E-08 6.3E-13 121.3 9.7 77 192-270 779-868 (880)
462 PRK06995 flhF flagellar biosyn 98.7 5.8E-08 1.3E-12 109.3 10.6 151 70-252 244-400 (484)
463 TIGR02169 SMC_prok_A chromosom 98.7 3.6E-08 7.9E-13 123.7 9.0 76 191-269 1071-1150(1164)
464 smart00382 AAA ATPases associa 98.6 8.8E-07 1.9E-11 81.2 14.7 118 81-252 1-124 (148)
465 COG0842 ABC-type multidrug tra 98.5 8.7E-06 1.9E-10 84.6 20.6 167 461-656 117-284 (286)
466 PRK13891 conjugal transfer pro 98.5 2E-06 4.4E-11 104.4 17.8 69 205-274 680-751 (852)
467 TIGR02655 circ_KaiC circadian 98.5 3.9E-08 8.4E-13 112.1 2.9 165 71-269 9-190 (484)
468 TIGR01026 fliI_yscN ATPase Fli 98.5 1.5E-06 3.2E-11 97.4 14.7 173 68-281 150-345 (440)
469 PRK07196 fliI flagellum-specif 98.5 1.3E-07 2.8E-12 105.1 5.8 173 68-276 142-333 (434)
470 TIGR01420 pilT_fam pilus retra 98.5 5.5E-07 1.2E-11 98.3 10.2 56 204-268 187-242 (343)
471 TIGR00611 recf recF protein. A 98.4 2.9E-07 6.3E-12 101.2 7.2 59 194-255 275-342 (365)
472 TIGR03881 KaiC_arch_4 KaiC dom 98.4 5.5E-08 1.2E-12 99.8 1.4 33 71-103 8-41 (229)
473 COG0419 SbcC ATPase involved i 98.4 7.2E-07 1.6E-11 109.3 10.8 78 191-270 812-897 (908)
474 cd01130 VirB11-like_ATPase Typ 98.4 5.4E-07 1.2E-11 89.8 8.0 81 71-154 14-98 (186)
475 PRK14079 recF recombination pr 98.4 5.8E-07 1.3E-11 98.3 8.0 74 194-275 263-345 (349)
476 cd02023 UMPK Uridine monophosp 98.4 3.1E-07 6.7E-12 92.1 5.5 112 84-227 1-113 (198)
477 PRK13898 type IV secretion sys 98.4 8.9E-06 1.9E-10 98.5 18.2 48 208-255 638-686 (800)
478 PRK06002 fliI flagellum-specif 98.3 9E-07 2E-11 98.6 8.1 184 48-276 136-343 (450)
479 TIGR00767 rho transcription te 98.3 8.3E-07 1.8E-11 97.2 7.4 81 2-107 102-193 (415)
480 PRK05399 DNA mismatch repair p 98.3 9.7E-07 2.1E-11 106.9 8.7 138 69-264 595-738 (854)
481 PLN03210 Resistant to P. syrin 98.3 3.4E-06 7.3E-11 106.0 12.4 164 73-291 198-365 (1153)
482 TIGR02680 conserved hypothetic 98.2 2.5E-06 5.4E-11 108.1 7.4 60 192-254 1245-1316(1353)
483 cd01122 GP4d_helicase GP4d_hel 98.1 6.1E-05 1.3E-09 79.2 15.6 37 69-105 17-53 (271)
484 TIGR01248 drrC daunorubicin re 98.1 2.7E-05 5.8E-10 75.1 11.4 129 459-592 16-146 (152)
485 PRK13873 conjugal transfer ATP 98.1 5.2E-05 1.1E-09 92.0 16.6 47 209-255 632-679 (811)
486 PRK09825 idnK D-gluconate kina 98.1 1.4E-06 3E-11 86.1 2.5 64 81-151 2-69 (176)
487 PF13555 AAA_29: P-loop contai 98.1 4.5E-06 9.8E-11 67.7 4.3 37 72-108 12-49 (62)
488 TIGR03518 ABC_perm_GldF glidin 98.0 0.00077 1.7E-08 70.0 21.9 187 387-587 2-206 (240)
489 PRK06315 type III secretion sy 98.0 1.2E-05 2.6E-10 89.9 8.3 108 69-180 152-277 (442)
490 cd00009 AAA The AAA+ (ATPases 98.0 4.4E-05 9.6E-10 70.6 11.0 55 200-255 72-131 (151)
491 PRK01889 GTPase RsgA; Reviewed 98.0 5E-06 1.1E-10 91.2 4.9 76 72-151 185-262 (356)
492 PF13558 SbcCD_C: Putative exo 97.9 1.9E-05 4.1E-10 69.3 6.4 48 192-239 30-90 (90)
493 cd01876 YihA_EngB The YihA (En 97.9 1.6E-05 3.5E-10 75.7 6.5 64 169-240 101-169 (170)
494 PF00488 MutS_V: MutS domain V 97.9 0.00029 6.3E-09 72.9 15.4 51 210-262 120-172 (235)
495 PF09818 ABC_ATPase: Predicted 97.9 0.00032 6.9E-09 77.4 16.4 79 194-273 322-416 (448)
496 TIGR02903 spore_lon_C ATP-depe 97.9 3.2E-05 7E-10 90.7 8.7 111 81-239 174-291 (615)
497 PRK13764 ATPase; Provisional 97.9 0.0001 2.2E-09 85.3 12.6 64 209-280 321-401 (602)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.9 7.6E-05 1.7E-09 81.9 11.0 28 80-107 132-159 (358)
499 PRK08149 ATP synthase SpaL; Va 97.9 1.8E-05 3.9E-10 88.1 6.0 173 68-277 138-329 (428)
500 PRK00454 engB GTP-binding prot 97.9 0.0002 4.2E-09 71.1 12.9 67 169-243 126-195 (196)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-109 Score=958.03 Aligned_cols=587 Identities=40% Similarity=0.641 Sum_probs=513.5
Q ss_pred CCceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 005252 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (706)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~- 124 (706)
...++.++|+|++++.+.+.+..+++|+|||++++|||++|||||||||||||||+|+|+...+...+|+|++||++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998654335689999999999999999999999999999999999999876568999999997643
Q ss_pred -cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..++.+|||.|||.+++++||+|+|.|+|.+|+|...++++++++|+++++++||++|+||++|+...||+||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 2346789999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||.+|++||+||||||||||||+.++.++++.|+++|++|+|||+++|||+++++++||++++|++|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHH-
Q 005252 284 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV- 362 (706)
Q Consensus 284 ~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~- 362 (706)
+||++.|++||++.||+||++++++.+ +..... ..........+.++..+...+.....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SGTREL-------------------EEAVRIAKLINKFSQTDNLKKTLEALE 319 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CCchhH-------------------HhHHHHHHHhhhccccchhhhhHHHHh
Confidence 999999999999999999999998854 110000 00111111222222100000000000
Q ss_pred hhhhhccCccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHH
Q 005252 363 EGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 442 (706)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~ 442 (706)
....+ .... .....++||.|++.|++|.+++.+|||.+.+.|+++.+.+|+++|++||+++++..++++|.|++||+
T Consensus 320 ~~~~~--~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 320 KSLST--SKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFI 396 (613)
T ss_pred hhccc--cccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Confidence 00000 0000 11127899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhhhHHhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHH
Q 005252 443 FGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCL 521 (706)
Q Consensus 443 ~~~~~~~~~~-~~~~~~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l 521 (706)
..++.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 9999888776 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcc
Q 005252 522 YASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF 601 (706)
Q Consensus 522 ~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~ 601 (706)
++..++++++++++++++||..+|+++++++.++|++|+|||++.++||++ .+|++|+||++|++||+++|||.+...
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~--~~w~~~~S~~ry~~e~l~~n~~~~~~~ 554 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKY--FRWISYLSYFRYAFEALLINQFSGGSS 554 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHH--HHHHHHHhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999973 346999999999999999999987444
Q ss_pred CCCCC--CCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005252 602 DNQSP--DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 659 (706)
Q Consensus 602 ~~~~~--~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~~~ 659 (706)
.|... ..+..+|++++++ .+++. .++|.|+.++++++++||+++|++|+++.+.+.
T Consensus 555 ~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 555 RCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred ccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 44332 3577899999998 78875 469999999999999999999999999887653
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.9e-104 Score=916.51 Aligned_cols=582 Identities=32% Similarity=0.529 Sum_probs=506.7
Q ss_pred eEEEEEeEEEEEEcc----CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 005252 50 ARLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 125 (706)
..++|+++. ++... +.+++.+|+|+|+++++||++||+|||||||||||++|+|+.+++...+|+|.+||++...
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~ 94 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH
Confidence 345666665 43221 1235789999999999999999999999999999999999987754468999999997532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCChHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRR 202 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~-~~~~LSGGerqR 202 (706)
.++.++||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++||.+|+. ..++||||||||
T Consensus 95 ~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkR 174 (617)
T TIGR00955 95 KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKR 174 (617)
T ss_pred HHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhH
Confidence 23578999999999999999999999999888776777888889999999999999999999975 368999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+||++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|||+++++++||++++|++|+++|+|+++++
T Consensus 175 vsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 175 LAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 99999999999999999999999999999999999999988999999999998889999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHH
Q 005252 283 FEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362 (706)
Q Consensus 283 ~~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 362 (706)
.+||++.|++||++.||+||++++++.+.+.. ....+..+.+.+.|+.+....+..+..
T Consensus 255 ~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~ 313 (617)
T TIGR00955 255 VPFFSDLGHPCPENYNPADFYVQVLAVIPGSE---------------------NESRERIEKICDSFAVSDIGRDMLVNT 313 (617)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHHhhcCcccc---------------------cchHHHHHHHHHHHhcchhhHHHHHHh
Confidence 99999999999999999999999876542110 001223445667777776555444333
Q ss_pred hhhhhcc-C-----ccccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhh
Q 005252 363 EGISKVK-G-----TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG 436 (706)
Q Consensus 363 ~~~~~~~-~-----~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~ 436 (706)
....... + ...+..++..+|++|+.+|++|++++.+|||.+++.|+++.+++|+++|++||+++++++++++|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~ 393 (617)
T TIGR00955 314 NLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN 393 (617)
T ss_pred hhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 2111110 0 001123467899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh-hhhhhHHhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHH
Q 005252 437 SCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYL 515 (706)
Q Consensus 437 g~lff~~~~~~~~~~-~~~~~~~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~ 515 (706)
|++|++..+++|.++ ..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+|+
T Consensus 394 g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~ 473 (617)
T TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHH
Confidence 999999988888765 5688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHh
Q 005252 516 FFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQND 595 (706)
Q Consensus 516 ~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~ne 595 (706)
+|++++++..++++++++++++++||..+|+.+++++.+++++|+||++++++||+ +|+ |++|+||++|++||++.||
T Consensus 474 ~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996 455 5999999999999999999
Q ss_pred hCCCcc-CCCCC---CCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005252 596 LKGLWF-DNQSP---DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 657 (706)
Q Consensus 596 f~g~~~-~~~~~---~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~ 657 (706)
|.|..+ +|... +.|..+|+++|+. ||++.+ +.|.|+++|+++.++|++++|++|+++.+.
T Consensus 552 f~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~-~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 552 WSDVDNIECTSANTTGPCPSSGEVILET-LSFRNA-DLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred hCCCccccccCcCcCCCCCcChHHHHHh-cCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999876 45321 2266789999997 899754 589999999999999999999999986554
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3e-103 Score=912.87 Aligned_cols=577 Identities=30% Similarity=0.482 Sum_probs=482.8
Q ss_pred CCCceeEEEEEeEEEEEEccC------------------------CccccceeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005252 45 SGDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (706)
Q Consensus 45 ~~~~~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~ 100 (706)
.+..++.++|.|++|++.... -+++.+|+|||+++++||++||+||||||||||||
T Consensus 33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~ 112 (659)
T PLN03211 33 SSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLN 112 (659)
T ss_pred CCCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 344578999999999985321 12467999999999999999999999999999999
Q ss_pred HHHcCCCCCCCceeEEEECCEecCc-CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 005252 101 ALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (706)
Q Consensus 101 ~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 179 (706)
+|+|+.+++ ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||
T Consensus 113 iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL 191 (659)
T PLN03211 113 ALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL 191 (659)
T ss_pred HHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 999998764 258999999987532 235699999999999999999999999877766555666777889999999999
Q ss_pred CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 005252 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (706)
Q Consensus 180 ~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~ 259 (706)
++++||.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.+++
T Consensus 192 ~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~ 271 (659)
T PLN03211 192 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVY 271 (659)
T ss_pred hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999889999999999987799
Q ss_pred hhCCeEEEEeCCeEEEEcCchhHHHHHHhcCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchH
Q 005252 260 ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTA 339 (706)
Q Consensus 260 ~~~D~vilL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (706)
++||++++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+... .+.. . . ...
T Consensus 272 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~-----~-~------~~~ 334 (659)
T PLN03211 272 QMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVS-----E-R------EKP 334 (659)
T ss_pred HhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCcc-----c-c------ccc
Confidence 999999999999999999999999999999999999999999999988764210 0000 0 0 000
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHhh--hhh---c-----cCccc--cCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHH
Q 005252 340 EAIKNLIDFYQTSQHSYAAKEKVEG--ISK---V-----KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLR 407 (706)
Q Consensus 340 ~~~~~l~~~~~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r 407 (706)
...+.+.+.|++... ....+.... ... . ..... ....+.++||+|+.+|++|++++ +||+.+.+.|
T Consensus 335 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r 412 (659)
T PLN03211 335 NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLR 412 (659)
T ss_pred hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHH
Confidence 111234445543211 111111100 000 0 00000 11234578999999999999998 8999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHHHHHHHHH-HhhhhhhHHhhhhHHHhhhcCCCCChHHHHHHHHHHH
Q 005252 408 LVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM-SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSA 486 (706)
Q Consensus 408 ~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~-~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~la~~l~~ 486 (706)
+++++++|+++|++||+++ ..++++|.|++||++.++.+. ++..++.|+.||+||+||+.+|+|++++|++|++++|
T Consensus 413 ~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~e 490 (659)
T PLN03211 413 VFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGD 490 (659)
T ss_pred HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999985 678999999999998887665 4578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCC
Q 005252 487 MPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLP 566 (706)
Q Consensus 487 lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~ 566 (706)
+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++++++||+.+|+.+++++++++++|+||+++
T Consensus 491 lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~- 569 (659)
T PLN03211 491 LPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH- 569 (659)
T ss_pred HHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCccccccccccccHHHHHHHHHHHHhhCCCc-----cCCCCCC-----CCCcCHHHHHhhhcCcccccchhHHHHHH
Q 005252 567 NDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSPD-----LPKIPGEYVLENVFQIDVRRSKWIDLSVI 636 (706)
Q Consensus 567 ~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~-----~~~~~~~-----~~~~~G~~vL~~~~~~~~~~~~w~~~~iL 636 (706)
+||+ +|+ |++|+||++||+||++.|||.+.. ++|..+. .|...++.++. +.+.|.|+++|
T Consensus 570 -~ip~-~~~-W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l 639 (659)
T PLN03211 570 -KLPS-CMA-WIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVL 639 (659)
T ss_pred -hchH-HHH-HHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHH
Confidence 7986 465 499999999999999999997643 3554321 13334444432 23589999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005252 637 FSMIISYRIIFFVMIKIS 654 (706)
Q Consensus 637 ~~~~~~~~~l~~~~L~~~ 654 (706)
++++++||+++|++|++.
T Consensus 640 ~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 640 IFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999854
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.1e-101 Score=955.11 Aligned_cols=590 Identities=23% Similarity=0.387 Sum_probs=508.7
Q ss_pred ceeEEEEEeEEEEEEcc---------------------------CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005252 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~ 100 (706)
+.+.+.|+||+++.... +++.++||+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999876321 112367999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEecCc----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-H
Q 005252 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (706)
Q Consensus 101 ~LaG~~~~~-~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~----~~~~~~~~~~-v 170 (706)
+|+|+..+. ...+|+|.+||++... .++.++||+|+|.+++.+||+|||.|+++++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987521 2346999999999999999999999998877543 2344444434 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 005252 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (706)
Q Consensus 171 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (706)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|+++++ .|+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999987 4999999
Q ss_pred EeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHHhcCCCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccC
Q 005252 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (706)
Q Consensus 250 ~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (706)
++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||++++.+.+..+... +. + .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~---~~-----e-~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKP---GY-----E-K 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccc---cc-----c-c
Confidence 9999988999999999999999999999999999999999999999999999999887654211100 00 0 0
Q ss_pred CCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhhc------------------cCccccCCCCCCcHHHHHHHHHH
Q 005252 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~s~~~Q~~~L~~ 391 (706)
..| ...+++++.|++|+.++...+.++..... .........+..|+|+|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 011 11245778888887666554443321100 00011124577899999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHHHHHHHHHHhhhhhhHHhhhhHHHhhhcCC
Q 005252 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNG 471 (706)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~~~~~~~~~er~vf~rE~~~g 471 (706)
|++++++|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+.+|+++..++.++.||+||+||+.+|
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 005252 472 HYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAG 551 (706)
Q Consensus 472 ~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~ 551 (706)
+|++++|++|++++++|+.++.+++|++|+|||+||++++.+|++|+++++++.++++++++++++++||+.+|+.++++
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCC--C----------------------C
Q 005252 552 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P----------------------D 607 (706)
Q Consensus 552 ~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~--~----------------------~ 607 (706)
+++++++|+||++++++||+ ||+ |++|+||++|||||++.|||.|..++|.. | |
T Consensus 570 ~~~~~~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g 647 (1394)
T TIGR00956 570 LLLALSIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPG 647 (1394)
T ss_pred HHHHHHHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCC
Confidence 99999999999999999996 454 59999999999999999999999998841 1 1
Q ss_pred CCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005252 608 LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 656 (706)
Q Consensus 608 ~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~ 656 (706)
.+..+|+++|+..|+++.+ ++|+|+++|++|+++|++++++++.+...
T Consensus 648 ~~~~~G~~~L~~~~~~~~~-~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 648 QDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred cccccHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1356999999976888754 69999999999999999999999988763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-100 Score=945.92 Aligned_cols=580 Identities=27% Similarity=0.413 Sum_probs=507.8
Q ss_pred eeEEEEEeEEEEEEccC--------CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 49 SARLTWKDLTVMVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
++.++|+||+|.++.+. .+.+.+|+|||++++||+++|||||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996432 13457999999999999999999999999999999999997643 3589999999
Q ss_pred EecCc--CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 121 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
++... ..+.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998887766566677778899999999999999999997777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC-CeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~-G~iv~~G 277 (706)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999989999999999998778999999999996 8999999
Q ss_pred Cc----hhHHHHHHhc-CCC-CCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhh
Q 005252 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (706)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (706)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5799999997 665 999999999999987543100 001247788988
Q ss_pred chhhHHHHHHHhhhhhcc-Cc-cc-cCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 005252 352 SQHSYAAKEKVEGISKVK-GT-VL-DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (706)
Q Consensus 352 s~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~ 428 (706)
|+.++...+.+.+..... +. .. ...++.++||+|+++|++|+++++||||.+++.|+++.+++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 887776655554332211 11 11 1246789999999999999999999999999999999999999999999999987
Q ss_pred h---hhHhhhhhHHHHHHHHHHHHHh-hhhhhHHhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 005252 429 Y---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFM 504 (706)
Q Consensus 429 ~---~~i~~r~g~lff~~~~~~~~~~-~~~~~~~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m 504 (706)
. .++++|.|++|+++.++.+..+ ..+|.|..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m 1317 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAM 1317 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 4677889999998888777554 45799999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHH
Q 005252 505 VRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFH 584 (706)
Q Consensus 505 ~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~ 584 (706)
+||++++.+|++|+++++++.++++++|+++++++||..+|.++++++.+++++|+||++++++||+ +|+ |++|+||+
T Consensus 1318 ~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~ 1395 (1470)
T PLN03140 1318 VAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPV 1395 (1470)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 576 59999999
Q ss_pred HHHHHHHHHHhhCCCccCCCCCCC-CCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005252 585 YWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 658 (706)
Q Consensus 585 ~ya~e~l~~nef~g~~~~~~~~~~-~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~~ 658 (706)
+|+++|++.|||.|.+++|..++. +..+|++++.++||++.+ +.|++++++++|+++|++++++++++....+
T Consensus 1396 ~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1396 AWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPD-FMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred HHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcc-cccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999887765542 235788888778999865 5999999999999999999999999876544
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.9e-99 Score=934.57 Aligned_cols=593 Identities=23% Similarity=0.378 Sum_probs=506.1
Q ss_pred CceeEEEEEeEEEEEEc-----------------------------cCCccccceeceEEEEeCCeEEEEECCCCCcHHH
Q 005252 47 DVSARLTWKDLTVMVTL-----------------------------SNGETHNVLEGLTGYAEPGTLTALMGPSGSGKST 97 (706)
Q Consensus 47 ~~~~~l~~~~ls~~~~~-----------------------------~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKST 97 (706)
.+.+.+.|+||++.... +++..+.||+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 35678999999997651 0123467999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCc--CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-------CCCHHHH--
Q 005252 98 LLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK-- 166 (706)
Q Consensus 98 LL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-------~~~~~~~-- 166 (706)
|||+|+|+++++...+|+|.+||++... .++.++||+|+|.+++.+||+|||.|+++++.+. ..+++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 9999999998765569999999987532 2467999999999999999999999998765321 1111211
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005252 167 ----------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (706)
Q Consensus 167 ----------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsg 224 (706)
+..++++++.+||++|+||.+|+..+++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1246789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHHhcCCCCCCCCCChhHH
Q 005252 225 LDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 303 (706)
Q Consensus 225 LD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~d~~ 303 (706)
||+.++.++++.|+++++ .|+|||+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 5899999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhhc---cCccccCCCCCC
Q 005252 304 LRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQA 380 (706)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 380 (706)
+++++.+.... .+.....|.... ..+++++.|++|..++...+++...... .......+++..
T Consensus 447 ~~v~s~~~~~~----------~~~~~~~p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 447 QEVTSKKDQEQ----------YWADRNKPYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred HHhcCchhhhh----------hhhccCCccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 98876431100 000111111111 1245888999988776655544321111 111122356889
Q ss_pred cHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHhhhhhHHHHHHHHHHHHHhhhhhhH
Q 005252 381 SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSF 457 (706)
Q Consensus 381 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~---~~i~~r~g~lff~~~~~~~~~~~~~~~~ 457 (706)
+++.|++.|++|.+++++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||++.+.+|.++..++.+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997543 3456778999999888888888889999
Q ss_pred HhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 458 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 537 (706)
Q Consensus 458 ~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~ 537 (706)
+.||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||+|+++++++.+++.++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCC-CCCCCcCHHHH
Q 005252 538 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS-PDLPKIPGEYV 616 (706)
Q Consensus 538 ~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~-~~~~~~~G~~v 616 (706)
++|++.+|+.+++++++++++|+||+++.++||+ ||+ |++|+||++||+||++.|||.+..+.+.. .+.+...|+++
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~ 750 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAV 750 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHH
Confidence 9999999999999999999999999999999996 455 49999999999999999999887764321 23356799999
Q ss_pred HhhhcCcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005252 617 LENVFQIDVR-RSKWIDLSVIFSMIISYRIIFFVMIKISED 656 (706)
Q Consensus 617 L~~~~~~~~~-~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~ 656 (706)
|+. +|++.+ .+.|+|+++|++|+++|+++++++|++...
T Consensus 751 L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 751 LNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred HHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 976 899654 468999999999999999999999998763
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-97 Score=925.13 Aligned_cols=575 Identities=27% Similarity=0.409 Sum_probs=499.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CcC
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFG 128 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~ 128 (706)
..++|+||++++..+ ++.+.+|+|||++++|||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 468999999998532 234689999999999999999999999999999999999987543458999999998632 246
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||++++|+.+|+. ..+|||||||||+||+|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHH
Confidence 79999999999999999999999998887665667777889999999999999999999863 34899999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC-eEEEEcCc----hhH
Q 005252 209 ILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAA 282 (706)
Q Consensus 209 L~~~p~-llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G-~iv~~G~~----~~~ 282 (706)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999999889999999999987778999999999987 99999997 568
Q ss_pred HHHHHhcCC-CCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHH
Q 005252 283 FEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (706)
Q Consensus 283 ~~~f~~~g~-~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~ 361 (706)
.+||+..|+ +||++.|||||++++++.+... +..+++.+.|+.|...+...+.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHHH
Confidence 899999996 9999999999999988653110 0012366778777766655544
Q ss_pred HhhhhhccC---c---cccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhh
Q 005252 362 VEGISKVKG---T---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILAR 435 (706)
Q Consensus 362 ~~~~~~~~~---~---~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r 435 (706)
++....... . .....++.+|||+|+++|++|+++++||||.+++.|+++++++|+++|++||++++++.++++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 433221100 0 0112457899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhhHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHH-
Q 005252 436 GSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH- 513 (706)
Q Consensus 436 ~g~lff~~~~~~~~~~~~~~~~~~er~vf-~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~- 513 (706)
.|++|+++.+..++....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..
T Consensus 1130 ~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~ 1209 (1394)
T TIGR00956 1130 MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccc
Confidence 99999988877777667789999999886 9999999999999999999999999999999999999999999988765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHH
Q 005252 514 ------YLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWA 587 (706)
Q Consensus 514 ------f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya 587 (706)
|++|++++++..++++++|+++++++||..+|..+++++.+++++|+||++++++||+ +|+ |++|+||++|+
T Consensus 1210 ~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~ 1287 (1394)
T TIGR00956 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYL 1287 (1394)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 576 49999999999
Q ss_pred HHHHHHHhhCCCccCCCCC-------------------------------C---CC----CcCHHHHHhhhcCcccccch
Q 005252 588 LQGQYQNDLKGLWFDNQSP-------------------------------D---LP----KIPGEYVLENVFQIDVRRSK 629 (706)
Q Consensus 588 ~e~l~~nef~g~~~~~~~~-------------------------------~---~~----~~~G~~vL~~~~~~~~~~~~ 629 (706)
++|++.|||.|.++.|... + .| +.+|+++|+. ++++.+ +.
T Consensus 1288 ~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~ 1365 (1394)
T TIGR00956 1288 VQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GR 1365 (1394)
T ss_pred HHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-cc
Confidence 9999999999988766431 0 12 4599999998 788754 59
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005252 630 WIDLSVIFSMIISYRIIFFVMIKISEDV 657 (706)
Q Consensus 630 w~~~~iL~~~~~~~~~l~~~~L~~~~~~ 657 (706)
|+|+++++++++++ ++++++|.+..|+
T Consensus 1366 w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1366 WRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred ccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 99999999999999 8888888776543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-96 Score=861.80 Aligned_cols=577 Identities=28% Similarity=0.434 Sum_probs=506.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-c-CcCc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFGT 129 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-~-~~~~ 129 (706)
..|+|+.+++.. +++++++|+|||+.++||.++||||+||||||||||+||||...+ .++|+|++||.+.. . ..|.
T Consensus 788 ~~w~dl~~~~~~-qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 788 FYWVDLPYEMPI-QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred EEEEeCCccccc-cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccc
Confidence 567777776644 346789999999999999999999999999999999999998665 57999999999854 3 3477
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
+|||.|+|.|.+.+||||.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999976 99999999999999999
Q ss_pred hhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe-CCeEEEEcCchh----HH
Q 005252 210 LMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----AF 283 (706)
Q Consensus 210 ~~~p-~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~-~G~iv~~G~~~~----~~ 283 (706)
+.|| .||||||||||||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|+ +|++||+|+..+ ++
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li 1024 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLI 1024 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHH
Confidence 9999 89999999999999999999999999999999999999999999999999999997 799999999855 55
Q ss_pred HHHHhcC-CCCCCCCCChhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHH
Q 005252 284 EFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362 (706)
Q Consensus 284 ~~f~~~g-~~~p~~~np~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 362 (706)
+||++.| .+||+..|||||+++++....+. +...++++.|++|+.++++.+.+
T Consensus 1025 ~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1025 EYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHHH
Confidence 7999986 89999999999999998654110 01125889999999999999988
Q ss_pred hhhhhccCc-c---ccCCCCCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhH
Q 005252 363 EGISKVKGT-V---LDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSC 438 (706)
Q Consensus 363 ~~~~~~~~~-~---~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~ 438 (706)
+++...... . ..+.++.+|+|.|++.+++|++..+||+|.|+++|++..++.||++|+.||++|++.++++|..++
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 877643222 1 124668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hhHHhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHH
Q 005252 439 ASFVFGFVTFMSIGGF-PSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFF 517 (706)
Q Consensus 439 lff~~~~~~~~~~~~~-~~~~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f 517 (706)
+|..+.+..-...+.. +.+..||.+++||+.+|+|++.+|++|++++|+|+.++.+.+|.+++|+|+|+..++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9988776655544434 555669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhC
Q 005252 518 VLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLK 597 (706)
Q Consensus 518 ~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~ 597 (706)
++..+++.+..+++|+++.+++||..+|.++.+.+..++.+|+|++++++.||+ +|+| ++|+||+.|.+++++..+++
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~ 1316 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLG 1316 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999997 6874 99999999999999999999
Q ss_pred CCccCCCCCCC------CCcCHHHHHhhhcC----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 005252 598 GLWFDNQSPDL------PKIPGEYVLENVFQ----IDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPW 660 (706)
Q Consensus 598 g~~~~~~~~~~------~~~~G~~vL~~~~~----~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~~~~ 660 (706)
+.+-.|...+. +-.+..++++.++| +..+. .-....+.+.+.+++.+++.+..++.++.+.+
T Consensus 1317 d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnf 1388 (1391)
T KOG0065|consen 1317 DVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRNF 1388 (1391)
T ss_pred CCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHhh
Confidence 98877755431 22456678888888 43221 11223455667788888888888887766543
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-89 Score=800.15 Aligned_cols=573 Identities=26% Similarity=0.454 Sum_probs=503.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CcCcEEEEecCCCCCCCCCHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
..+|+|+|+.++||+++.++||.||||||||++|+|.++......|+|.+||.+.+. .++.++|+.|+|.++|.||||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987666668899999987542 247799999999999999999
Q ss_pred HHHHHHhhccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005252 147 ETISYSARLRLPDK----MPWSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (706)
Q Consensus 147 E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP 221 (706)
|+|.|+++++.+.. .++.++.+ .++.+++.+||++|+||+|||...||+||||||||+||..++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999988733 23333332 67889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHHhcCCCCCCCCCCh
Q 005252 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np~ 300 (706)
|+|||+.++.++++.|+++++ .+.|+++++|||+++++++||+|++|++|+++|+||.+++++||++.|+.||+++++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999997 5899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhhc---cCccccCCC
Q 005252 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGG 377 (706)
Q Consensus 301 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~ 377 (706)
||+.++.+.. + +...+...+.+....+ ..++.+.|.+++.+......++..... .......++
T Consensus 368 DfLt~vts~k-~---------~~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKK-D---------QEQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCc-c---------ccccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 9988776521 1 1111222222222222 245888999999888776666543221 112233577
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHhhhhhHHHHHHHHHHHHHhhhhhh
Q 005252 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (706)
Q Consensus 378 ~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~-~~~~~i~~r~g~lff~~~~~~~~~~~~~~~ 456 (706)
+..++|.|++++++|.|..+.||..++..+.++.+++|+++|++|++.+ .+..+...|.|++||.+.+.+|++++.++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 457 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 536 (706)
Q Consensus 457 ~~~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~ 536 (706)
.++.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||++++.++++..++.+++++++
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCC-----------
Q 005252 537 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS----------- 605 (706)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~----------- 605 (706)
+++++...|+.++++.+.++.+++||+++.++||+ || .|++||||..||+|+++.|||.|..++|..
T Consensus 594 ~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~-~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~ 671 (1391)
T KOG0065|consen 594 SLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP-WF-RWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIE 671 (1391)
T ss_pred HhcchHHHHhhHhHHHHHHHHHHcceeeeccccch-HH-HHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccc
Confidence 99999999999999999999999999999999996 34 459999999999999999999999998861
Q ss_pred ----------CCCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005252 606 ----------PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 658 (706)
Q Consensus 606 ----------~~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~~ 658 (706)
+|..++.|.++++..|+++. ++.|+|++|++|+.++|.++..+++.+.+..+
T Consensus 672 ~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~-~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 672 NKVCAATGATLGNDYVSGRDYLKVQYQYEY-KWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred cccchhhccccCceEEeccccccccccccc-ceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 12234566667766566654 57999999999999999999999887766443
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-52 Score=407.23 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=197.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.|+++||+++| ++.++|+|||+++++||+++|+|||||||||||+||+|+..++ +|+|.++|++..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 58899999999 6789999999999999999999999999999999999999886 999999997532
Q ss_pred cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 125 ~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..++.+|+|+|+.+|||++||.||+.++...- ..+++++.++++.++|+++||.+.+|. +|.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999985432 246788999999999999999999887 67789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999996 578899999999999999999988753
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-49 Score=391.49 Aligned_cols=226 Identities=25% Similarity=0.430 Sum_probs=204.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++|+|+|+.| ..+.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++.. -
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHH
Confidence 7899999999 4688999999999999999999999999999999999999996 9999999998542 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
++.+|||-|.-.|||++||.||+.+...+. ..++++.+++++++++.+||+. ..++ +|++|||||+|||.
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVG 145 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVG 145 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHH
Confidence 478999999999999999999999987764 4678889999999999999974 4554 78899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||||+.+|++|++|||+++|||.++.++-+.++++.+ -|+|||++|||. +|.++++|||++|++|+++..++|++.+
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999986 499999999995 7999999999999999999999999876
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHh
Q 005252 284 EFFAQAGFPCPALRNPSDHFLRCI 307 (706)
Q Consensus 284 ~~f~~~g~~~p~~~np~d~~l~~~ 307 (706)
. ||++-|+..+
T Consensus 225 ~-------------~Pan~FV~~f 235 (309)
T COG1125 225 A-------------NPANDFVEDF 235 (309)
T ss_pred h-------------CccHHHHHHH
Confidence 4 6776666543
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-49 Score=402.16 Aligned_cols=220 Identities=27% Similarity=0.386 Sum_probs=199.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------- 124 (706)
++++|+++.|..+.++...+|+|||++|++||+.+|+|.||||||||++++.++..|+ +|+|.+||+++.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHH
Confidence 7899999998643233467999999999999999999999999999999999999996 999999997642
Q ss_pred -cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..++.||+++|+..|+...||.||+.|..++. ..++++++++|.++++.+||++.+|. +|.+|||||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRV 150 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRV 150 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHH
Confidence 12467999999999999999999999998775 47799999999999999999988887 5678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||||+.+|+||++|||||+|||.+...|+++|+++.+ .|.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999976 599999999996 678899999999999999999998765
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 230 F 230 (339)
T COG1135 230 F 230 (339)
T ss_pred h
Confidence 4
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-48 Score=391.52 Aligned_cols=204 Identities=32% Similarity=0.420 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.+.++++++.| +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|. +|+|.++|++.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999999 3488999999999999999999999999999999999999986 999999999875555789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+||+|++.|+|.+||+||+.++...+. .++++.++++++.|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 999999999999999999999987652 4567777899999999999998887 67899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
.+|++|+||||+++||..++..+.+.|.++.+ +++||+++|||. +|...++|||++|+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999875 689999999996 7899999999999984
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-48 Score=384.25 Aligned_cols=220 Identities=33% Similarity=0.468 Sum_probs=199.4
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--- 125 (706)
...+++++|++++ +++.||+|||+++++||+++||||||||||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4469999999999 6789999999999999999999999999999999999999996 9999999987421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHH
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGe 199 (706)
.++++|+++|+..||..|||+||+.|..+-. ...+++..++.+..-|+.+||... ++. +|.+||||+
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchH
Confidence 1367999999999999999999999975533 356788889999999999999765 444 778999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
+||++|||||+.||+++|+||||+||||.++..+.++++++.+. |.|+|++|||. ++++..||++++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999874 99999999996 67999999999999999999999
Q ss_pred chhHHH
Q 005252 279 TSAAFE 284 (706)
Q Consensus 279 ~~~~~~ 284 (706)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.8e-48 Score=386.86 Aligned_cols=208 Identities=32% Similarity=0.482 Sum_probs=182.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------- 124 (706)
++++||++.|..+... ..+|+++|++|++||++||+|||||||||||++|+|+..|+ +|+|.++|++..
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 5689999988643322 67999999999999999999999999999999999999985 999999997642
Q ss_pred --cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCcccCCCChHHHH
Q 005252 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGISGGERR 201 (706)
Q Consensus 125 --~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-~~vg~~~~~~LSGGerq 201 (706)
.+++.+|||+|+..|+|.+||+||+.+.+.+.. .+..+.+++++++++.+||.+..+ + +|.+|||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~-----~p~eLSGGqqQ 149 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK-----KPSELSGGQQQ 149 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC-----CchhcCHHHHH
Confidence 234679999999999999999999998765542 223356678899999999987665 4 46789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
||+|||||+.+|+++++||||.+||+.++..|+++|++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999875 99999999996 57899999999999994
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4e-48 Score=396.61 Aligned_cols=219 Identities=35% Similarity=0.444 Sum_probs=193.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+.+||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.+||+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58899999999 5788999999999999999999999999999999999999986 8999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++||||.......+||+|.+.++..-.... ....++.++.+++.|+.+|+.+.+++.+. +|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHH
Confidence 2367999999998888999999999984321111 11233444579999999999999999764 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||+ +...++||++++|++|++++.|++++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999995 699999999997 5789999999999999999999998876
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-47 Score=405.12 Aligned_cols=221 Identities=37% Similarity=0.517 Sum_probs=198.1
Q ss_pred EEEEEeEEEEEEccCCc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
.++++||++.+ + .+.+|+||||++++|+++||+||||||||||+|+|+|+..|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999999 4 588999999999999999999999999999999999999985 9999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.+||++|++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++++ ++||+|||||++|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHH
Confidence 2467999999999999999999999999987432 2455678999999999998555544 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|+||+.+|++|||||||+|||+.++..+.+.|++++++| +||+++||++ +++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999987 8999999997 68899999999999999999999888766
Q ss_pred HHHh
Q 005252 285 FFAQ 288 (706)
Q Consensus 285 ~f~~ 288 (706)
.+..
T Consensus 227 ~~~~ 230 (293)
T COG1131 227 KFGG 230 (293)
T ss_pred hhcc
Confidence 5543
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=388.46 Aligned_cols=218 Identities=30% Similarity=0.462 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--c
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~ 127 (706)
..++++||++.|. .+++|+|||+++++|++++|+||||||||||+|+|.|+++|. +|+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3689999999993 236999999999999999999999999999999999999986 99999999875433 3
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRL--PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 128 ~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~--~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+|||||.. .-|| +||+|.+..+...+. -...+ ++.++.++++|+.+|+.+.+|+.+| +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 6799999964 3345 599999998743221 11122 3346889999999999999999887 499999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+ ..+.++||+|++| ++++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 9999999999999999999999999999999999999999999999999997 5799999999999 5788899999876
Q ss_pred HH
Q 005252 283 FE 284 (706)
Q Consensus 283 ~~ 284 (706)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-47 Score=404.10 Aligned_cols=217 Identities=29% Similarity=0.458 Sum_probs=199.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~ 127 (706)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|||+.+|+ +|+|.++|++.. ...
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999999 3223999999999999999999999999999999999999986 999999999853 234
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
|.+|+|+|+..|||+|||+||+.|+++.+ ..++++.+++|+++.+.++|++..|++ +++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHH
Confidence 78999999999999999999999998775 457889999999999999999999984 5689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+++|++++||||.|+||...+..+...|+++.+ -|.|+|.+|||. .|+..++|||.+|++|++...|++.++.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999976 489999999996 68999999999999999999999987653
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=389.04 Aligned_cols=220 Identities=29% Similarity=0.452 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK-- 124 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~-- 124 (706)
+++.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|||+..|+ +|.|.+||+ +..
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 357888888888 5678999999999999999999999999999999999999997 899999999 432
Q ss_pred -cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.+.+++|||+|+..+|++|||.||+.|+.+.+ ....++.+.+.+++++|+.+.|++.++. +|.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 23478999999999999999999999998776 2334577888999999999999988877 6789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+ .++++++|||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999875 99999999996 789999999999999999999999887
Q ss_pred HH
Q 005252 283 FE 284 (706)
Q Consensus 283 ~~ 284 (706)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 54
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=404.75 Aligned_cols=218 Identities=27% Similarity=0.453 Sum_probs=199.5
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cC
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LS 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~ 126 (706)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.+||+++. ..
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 468999999999 5788999999999999999999999999999999999999996 999999999853 34
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.|.+++|+|+..|||+|||+||+.|+++++ ....+++.+++|+++++.++|++.+++ ++.+|||||+|||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234567788999999999999998877 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|+||||.|+||..-+.++...|+++.+ .|.|.|++|||. .|.+.++|||.+|++|++...|+++++-
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999976 599999999996 7899999999999999999999998763
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=372.36 Aligned_cols=222 Identities=28% Similarity=0.394 Sum_probs=193.9
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
+.|+++||++.|+ +++++|+|||++|++||++||+|||||||||||++|+|+.+++ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4689999999995 5688999999999999999999999999999999999998886 9999999975321
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (706)
.++.+||++|+..|.+.+||.+|+..+..-+.+ -++..++.+.++-+.|+++|+.+.+-++.+ .||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 146799999999999999999999987432211 012234455677889999999988877665 599
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
|||+|||+|||+|+++|++++.|||+++|||.++.+||+.|+++++ +|.|||++.||. +.+.++||||+-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999986 699999999996 67889999999999999999
Q ss_pred EcCchhHHH
Q 005252 276 FGETSAAFE 284 (706)
Q Consensus 276 ~G~~~~~~~ 284 (706)
.||++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=363.33 Aligned_cols=217 Identities=31% Similarity=0.429 Sum_probs=198.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----cCc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----LSF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~~~ 127 (706)
|++++|+++|. ...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+.. ..+
T Consensus 2 l~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHh
Confidence 67889999984 2345999999999999999999999999999999999999997 999999997632 225
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|.++.+..++..||++|||.|.+++. .+...+.+++++++.+.++|.++.|+++| ++|-|+||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHH
Confidence 78999998889999999999999999875 56678888999999999999999999887 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+++|++++|||||||||..+...+.+.+++++++|++||++||.. +++.++||+|++|++|++++.|+.++...
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999996 68999999999999999999999887654
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1e-45 Score=354.68 Aligned_cols=210 Identities=29% Similarity=0.393 Sum_probs=190.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------- 124 (706)
++|+|+++.|. ..+.+|+||||.+++||++-|+||||||||||||+|.+..+|+ +|+|++||++..
T Consensus 2 I~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeeccccccccc
Confidence 78999999984 3477999999999999999999999999999999999999886 899999998742
Q ss_pred -cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.-+++||+|+||..|+++.||+||++|..+.. ..+.++.+++|.++|+.+||.+.++. .|.+|||||+|||
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRv 146 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRV 146 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHH
Confidence 12478999999999999999999999997764 45678889999999999999988876 5678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.||++.||| ...+..+-.+++.|++|+++...
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999999999999999999 46677778899999999998754
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.5e-45 Score=388.95 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----C
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 126 (706)
.++++||++.| +.+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 8999999987532 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
++.+||++|++.+++.+||+||+.+.+.++ ..+..+.+++++++++.++|.+..++.++ +||||||||++||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876543 23345556678899999999988888664 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++++...
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999988899999999996 68899999999999999999999987654
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.9e-45 Score=396.37 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=195.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||++++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 8999999987532 24
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..|+. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 245667778899999999999888774 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++||++ .++..++|++++|++|+++..|++++..+
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999774 89999999996 68999999999999999999999887643
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=396.07 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||++.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2367999999999999999999999999999999999999885 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++||+|++.+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986542 245566678899999999998887775 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+ .++.+++|++++|++|+++..|++++..
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 99999999996 6899999999999999999999988764
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.6e-45 Score=391.87 Aligned_cols=219 Identities=26% Similarity=0.393 Sum_probs=192.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.|..+ ++.+.+|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998421 12357999999999999999999999999999999999999886 8999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|.+ +.+|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1357999999999999999999999876532 234566678899999999999887764 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||||+++|++|+||||||+||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999875 99999999996 678899999999999999999998765
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 3
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-45 Score=393.62 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++... ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++||+|+..+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++. ++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 244667778899999999998877764 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++|||+ +++.+++|+|++|++|+++..|++++..
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 6889999999999999999999988754
No 30
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=359.22 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=192.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 125 (706)
..++++||++.| +++.+|+|||+.|++++++|+||||||||||||+++..... ++.+.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 67899999999999999999999999999999999998754 456789999999997421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
-++++|.|+|.+.-|| +|++||+.|+.++.- ...++.+++|++.|+.-.|.+.-..+..+ ...+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHH
Confidence 2478999999999999 799999999987652 22367788999999999886533222322 4567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||++|||+|+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||.+ ....+..|+...+..|+++++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 999999999999999999999999999999999999999984 69999999996 5788999999999999999999998
Q ss_pred hHH
Q 005252 281 AAF 283 (706)
Q Consensus 281 ~~~ 283 (706)
+..
T Consensus 234 ~iF 236 (253)
T COG1117 234 KIF 236 (253)
T ss_pred hhh
Confidence 653
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-44 Score=393.32 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~--G~I~~~G~~~~~--- 125 (706)
.|+++||+++| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 48899999998 3467999999999999999999999999999999999999886 7 999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
..+.++||+|+..+|+++||+||+.|+...+ ..++++.+++++++++.+||++..|+.+ ++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHH
Confidence 2367999999999999999999999986543 2455667788999999999998888754 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++||++ +++..++|+|++|++|+++..|++++..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 89999999996 6889999999999999999999988764
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=371.50 Aligned_cols=215 Identities=31% Similarity=0.472 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++||+|++.+++.+||+||+.+...... ..+.++..+++.++++.+||.+..++.+ ..|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13569999999999999999999998754221 1234455677889999999987777654 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999999987 489999999996 578889999999999999999987654
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-44 Score=387.62 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=194.8
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--- 125 (706)
...|+++||++.| +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999999 4567999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.++ +||||||||++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHH
Confidence 2357999999999999999999999765543 12344455678889999999988888665 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||++|+++|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++++..+
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999988899999999996 68899999999999999999999988754
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=391.04 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=193.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.+||++... ..
T Consensus 2 ~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 58899999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
+.++||+|++.+++++||+||+.|+...... ...++++.+++++++++.++|++..|++ +.+|||||||||+||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalA 148 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALA 148 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 5799999999999999999999998653211 1234556677899999999998877774 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|+|++|++|++++.|+++++.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999875 89999999996 6889999999999999999999988764
No 35
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-45 Score=362.17 Aligned_cols=220 Identities=29% Similarity=0.384 Sum_probs=189.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++||++.|..++. ..++|+|||+++++||+++|+|+||||||||.++|+|+.+|+ +|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 36899999999953221 225999999999999999999999999999999999999986 9999999976422
Q ss_pred --CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHH
Q 005252 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGer 200 (706)
.++.+-+|+||+ .+.|..||++.|.-.... ...++.+ +++.++++.+||... +++ ++.+||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R-----~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR-----RPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc-----CchhcChhHH
Confidence 356789999997 588999999999887553 2333333 449999999999753 443 6788999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||++|||||+.+|++||||||||+||+..+.+|+++|.++++ .|.|.|++|||. ..+..+||||++|++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeech
Confidence 999999999999999999999999999999999999999987 589999999995 678899999999999999999999
Q ss_pred hhHHH
Q 005252 280 SAAFE 284 (706)
Q Consensus 280 ~~~~~ 284 (706)
+++.+
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 87654
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.7e-44 Score=392.81 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 126 (706)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 358999999998 3467999999999999999999999999999999999999886 8999999987531 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++||+|++.+||++||+||+.|+.+.+ ..++.+.+++++++++.+||.+..++. +.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 367999999999999999999999986533 234566677899999999999888875 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|++||++ .++..++|+|++|++|+++..|++++..
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999874 99999999996 6899999999999999999999988754
No 37
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=369.87 Aligned_cols=217 Identities=31% Similarity=0.461 Sum_probs=193.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.+.++|+++.|.. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5789999999842 268999999999999999999999999999999999999986 899999998743
Q ss_pred cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 125 LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 125 ~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..++.+|||+|++ .++.. ||.|.+.|+.... ..+.++.+++++++++.+|+.+.+++ .+..||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqR 146 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQR 146 (235)
T ss_pred HhhcceEEEEECcccccccC-cHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceee
Confidence 2247799999996 55555 9999999997543 45677889999999999999998877 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||. +.+..++|++++|++|+++++|++.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999886 79999999995 78999999999999999999999866
Q ss_pred HHH
Q 005252 282 AFE 284 (706)
Q Consensus 282 ~~~ 284 (706)
+.+
T Consensus 226 i~~ 228 (235)
T COG1122 226 IFN 228 (235)
T ss_pred Hhh
Confidence 543
No 38
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-45 Score=409.95 Aligned_cols=250 Identities=30% Similarity=0.460 Sum_probs=210.6
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEe
Q 005252 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (706)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (706)
|++..|++|++|+++.+|..+-- +-..| ....-.++|+||++.|+.. ++.+||+|+||+++
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~--G~~~p---------------~~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLT--GTLAP---------------DHLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCC--Ccccc---------------ccccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 68899999999999999997631 11111 0123469999999999643 45789999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
|||++||+||||+||||+.++|-.++.|. +|+|++||+|++. .++.+|+|.|||.||.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999996 9999999998642 24789999999999998 99999999864
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 156 RLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 156 ~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
..+.++.. +.+.+.+ .++++..||.||+ +...||||||||++|||||++||+||||||.||+||+++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 23344433 2334444 4678889999997 4557999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
..|-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|.-+|..+
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998875 599999999964 468899999999999999998777654
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-44 Score=389.14 Aligned_cols=217 Identities=27% Similarity=0.393 Sum_probs=194.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 126 (706)
..|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 359999999998 3467999999999999999999999999999999999999886 8999999987532 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.+|||+|++.+|+++||.||+.|+.+.+ ..++.+.++++.++++.++|.+..++. +++|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 467999999999999999999999986543 234566778899999999998877764 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++|||+ .++..++|++++|++|+++..|++++..
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999876 589999999996 6889999999999999999999988764
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-43 Score=379.32 Aligned_cols=218 Identities=29% Similarity=0.400 Sum_probs=191.5
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
+.|+++||++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 358999999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.++|++|++.+++.+||+||+.+..... ..+..+.+++++++++.++|.+..++.++ +||||||||++|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHH
Confidence 1356999999999999999999998755432 12344445678889999999888887654 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++...
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 57889999999999999999999887653
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-44 Score=363.23 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999988 3467999999999999999999999999999999999998885 8999999986421 12
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999999999999999875442 1234445567899999999987777754 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999876 89999999996 57888999999999999999888764
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-44 Score=361.44 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=181.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTY-----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEe-----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 4688999988 3467999999999999999999999999999999999999885 8999999987432 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ ..||||||||++||++
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1234445567889999999987777654 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999986 489999999996 5788999999999999998765
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=361.59 Aligned_cols=216 Identities=31% Similarity=0.430 Sum_probs=185.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 4689999988311 01157999999999999999999999999999999999998875 8999999987643346799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
||+|++.+++.+||+||+.+....+ ..+.++..+.++++++.+||.+..++.+ +.||||||||++||++|+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233444567889999999987777654 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe--CCeEEEEcCch
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~--~G~iv~~G~~~ 280 (706)
+|+++||||||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|+ +|++++.++.+
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999965 589999999997 56788999999999 79999888753
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=365.75 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.++++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccc
Confidence 58899999998 3467999999999999999999999999999999999999875 8999999987431 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
+.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la 148 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALA 148 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHH
Confidence 5699999999999999999999987543211 00123344567889999999987777654 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|++++.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999874 89999999997 568899999999999999999987654
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-43 Score=365.58 Aligned_cols=217 Identities=29% Similarity=0.404 Sum_probs=186.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRF-----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEE-----CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 4678999988 3457999999999999999999999999999999999999875 8999999987432
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
....++|++|++.+++.+||+||+.+......... ....+..++++++++.+||++..++.+ +.||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHH
Confidence 12458999999999999999999998754321110 013344567889999999987777654 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987899999999997 57889999999999999999998
Q ss_pred chhH
Q 005252 279 TSAA 282 (706)
Q Consensus 279 ~~~~ 282 (706)
+++.
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 7654
No 46
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=375.61 Aligned_cols=232 Identities=26% Similarity=0.387 Sum_probs=195.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|++||.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999999421111246999999999999999999999999999999999999886 8999999987521
Q ss_pred ---CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHH
Q 005252 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 135699999986 5665 59999999876432 234566677899999999996 35555 456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987899999999996 578899999999999999999999
Q ss_pred hhHH---HHHHhcCCCCCCC
Q 005252 280 SAAF---EFFAQAGFPCPAL 296 (706)
Q Consensus 280 ~~~~---~~f~~~g~~~p~~ 296 (706)
++.. +.+...|+.+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHHcCHHHHHHcCCCCChH
Confidence 8764 3455667776643
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=387.35 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48899999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.+||++..++.+ .+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 2344556678999999999988777754 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ +++.++||++++|++|+++..|++++..
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 89999999996 5788999999999999999999988764
No 48
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-44 Score=342.17 Aligned_cols=213 Identities=28% Similarity=0.404 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~~ 128 (706)
+..++++++|. +.=-.+++.+++||++||+||||||||||||+|+|...|. +|+|++||++.. ...+
T Consensus 2 l~L~~V~~~y~-------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYG-------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeC-------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 45667777772 1234678899999999999999999999999999999986 999999999742 2346
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
-++.++|+.+||.+|||.+|+.++..-.+ .-.++.+++++.++.++||..+.++.. .+|||||||||++||+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHH
Confidence 68999999999999999999998854221 124566788999999999999988854 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+++-+||+||||+|.||+.-+.++..++.++++ ++.|++++||+| +++.+++|+++++++|+|.+.|+.++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999986 589999999998 5799999999999999999999987643
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-43 Score=363.72 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=186.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999988 3467999999999999999999999999999999999999885 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+++..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHH
Confidence 1245999999999999999999998865432 1233445567889999999987777654 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999988899999999997 578999999999999999999987654
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-43 Score=360.92 Aligned_cols=207 Identities=27% Similarity=0.383 Sum_probs=179.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++++.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999999831 1246999999999999999999999999999999999999885 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|++.+++.+||+||+.+..... ....++.++++.++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875532 1233445567899999999987777654 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999997 577889999999999974
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=381.72 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=190.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||+++|..+ +..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999998411 11367999999999999999999999999999999999999885 8999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++||+|++.+++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|||||||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHH
Confidence 1356999999999999999999999876543 2344555678899999999988777644 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999764 89999999996 578889999999999999999998765
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 3
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.6e-43 Score=357.25 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRF-----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEE-----CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 4689999988 3457999999999999999999999999999999999999875 8999999987432 224
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||++||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999998899999999875432 1234455567889999999987777754 5699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 5788899999999999999876
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-43 Score=362.18 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+..+ .+.+++|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 6889999988311 01127999999999999999999999999999999999999885 8999999987431
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHH
Confidence 1356999999999999999999998875432 1234445567889999999987777644 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 578889999999999999999987654
No 54
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-43 Score=370.56 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.|..+.+..+.+|+|||+++++||++||+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999998421111257999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChHHH
Q 005252 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++||+|++. .+...||+||+.+..... ..+.++..++++++++.+||. +..|+ .++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1356999999963 233469999999875432 244566667899999999996 45565 4467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||+|++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 99999999996 577889999999999999999998
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
++..
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8764
No 55
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-43 Score=371.35 Aligned_cols=231 Identities=24% Similarity=0.328 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++||++.|....+..+++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999999422111256999999999999999999999999999999999999886 8999999987521
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
..+.++||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHH
Confidence 124699999986 4554 69999999875432 234555567889999999996 556664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||+|++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999764 99999999996 5788999999999999999999
Q ss_pred CchhHH---HHHHhcCCCCC
Q 005252 278 ETSAAF---EFFAQAGFPCP 294 (706)
Q Consensus 278 ~~~~~~---~~f~~~g~~~p 294 (706)
++++.. ..+...+..+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 229 TPREIFADPDELEAIGLDLP 248 (290)
T ss_pred CHHHHhcCHHHHHHCCCCCC
Confidence 987753 23444454433
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.9e-43 Score=373.96 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=192.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----C
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 126 (706)
.++++|+++++ +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 48899999998 3467999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
++.+||++|++.+++.+||.||+.+.+.+. ..+.++..++++++++.+||++..++.+ +.||||||||++||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999876553 2234555667899999999998888765 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++...
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999996 67899999999999999999999987654
No 57
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.4e-43 Score=361.07 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecCc-
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~- 125 (706)
|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999988 3457999999999999999999999999999999999998 664 8999999987421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.++ .+||+||+.+...... .....+.+++++++++.+||.+..++.+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 134699999999888 7899999998754321 11222345678899999999876665420 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578889999999999999999987
Q ss_pred hh
Q 005252 280 SA 281 (706)
Q Consensus 280 ~~ 281 (706)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 64
No 58
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-43 Score=355.94 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CcCcE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (706)
++++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.+||++... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999988 3467999999999999999999999999999999999998875 8999999986432 23569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+|++|++.+++.+||+||+.+....+ ..+..+.++.++++++.+||++..++.+ ++||||||||++||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875443 1233445567889999999987777644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5678899999999999998764
No 59
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=373.88 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=192.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++|+++.|..+....+.+|+|||+++++||++||+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 469999999998422111246999999999999999999999999999999999999886 8999999976421
Q ss_pred -----------------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005252 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (706)
Q Consensus 126 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 185 (706)
.++.++||+|++ .+++. ||+||+.|+.... ..+.++..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999986 56665 9999998875321 234555667889999999996 45555
Q ss_pred cccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeE
Q 005252 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (706)
Q Consensus 186 ~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~v 265 (706)
.+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4467999999999999999999999999999999999999999999999987899999999996 5678999999
Q ss_pred EEEeCCeEEEEcCchhHH---HHHHhcCCCCC
Q 005252 266 YLLSGGKTVYFGETSAAF---EFFAQAGFPCP 294 (706)
Q Consensus 266 ilL~~G~iv~~G~~~~~~---~~f~~~g~~~p 294 (706)
++|++|++++.|++++.. +.+...|...|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999988654 23444555544
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.8e-43 Score=357.81 Aligned_cols=214 Identities=34% Similarity=0.505 Sum_probs=185.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
|+++|+++.+.. ..+++|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468999998831 1267999999999999999999999999999999999999885 8999999987431 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.+ ..||||||||++||+
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875433 1233444567889999999987777754 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ ..+.+++|++++|++|++++.|++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999976 59999999997 56778999999999999999998765
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.5e-43 Score=356.78 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++.+..+ .+.+++|+|+|+++++||+++|+|+|||||||||++|+|+++|. +|+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6789999988311 01126999999999999999999999999999999999999885 8999999987532 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.||||||||++||+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 2234455678899999999987777754 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999987899999999996 5788999999999999998754
No 62
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.4e-43 Score=375.34 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=182.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----CcCcEEEEecCCCCCCCC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~l 143 (706)
.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 457999999999999999999999999999999999999886 8999999987532 134699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005252 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (706)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs 223 (706)
||+||+.+.+.++ ..+..+.+++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2334455667899999999988888765 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999988899999999996 67889999999999999999999887654
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-43 Score=361.95 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++||++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889999882 1267999999999999999999999999999999999999875 8999999987431
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
..+.++|++|++.+++.+||+||+.+...... ......++..+++.++++.++|.+..++. +.+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12468999999999999999999987542110 00111223446788899999998766664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999986 489999999997 5788899999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88764
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.5e-43 Score=357.63 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999988 3457999999999999999999999999999999999999885 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 12469999999999999999999998754321 122345567778887 576666664 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++ .++.+++|++++|++|+++..|++++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987889999999996 578899999999999999999987654
No 65
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=371.61 Aligned_cols=220 Identities=25% Similarity=0.357 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.|+++||++.|..+......+|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48899999999422111246999999999999999999999999999999999999886 899999986431
Q ss_pred -----------------------cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 005252 125 -----------------------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (706)
Q Consensus 125 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 179 (706)
...+.+|||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 0134689999985 444 469999999875432 24556667789999999999
Q ss_pred C-ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 005252 180 Q-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (706)
Q Consensus 180 ~-~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i 258 (706)
. +..++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++
T Consensus 155 ~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~ 228 (305)
T PRK13651 155 DESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNV 228 (305)
T ss_pred ChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHH
Confidence 6 566664 457999999999999999999999999999999999999999999999987899999999996 578
Q ss_pred HhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 259 FELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 259 ~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
.++||+|++|++|++++.|++++..
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999999999999988754
No 66
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.1e-43 Score=411.93 Aligned_cols=249 Identities=29% Similarity=0.369 Sum_probs=206.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++.|.+|+.++++.+|+.+. ++.+ .. ..+....++++|++++|.. .+..+|+|+|++|+|
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~----~~~~--------~~----~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEG----DKTL--------IH----LPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccc----cccc--------cc----ccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 578899999999999988553 0000 01 1123346999999999952 334799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+|+|+|++.|. +|+|++||.+... -++.+|||+||+.+|.. |++||+.++...
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~- 573 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPE- 573 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 9999999998532 25789999999999988 999999987432
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~-----~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
.+.++. .+.+++.+. .+....||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.++.
T Consensus 574 ----~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 574 ----ATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 222222 222334443 456778999997 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.|.+.|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.++..+
T Consensus 647 ~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 647 IILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999864 699999999975 589999999999999999999998775
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.4e-43 Score=356.85 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.+...+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999883110 0157999999999999999999999999999999999999885 8999999987421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||.+..++.+ +.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHH
Confidence 1246999999999999999999999876543 1223444567889999999987776644 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. ++. .||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 5899999999974 554 9999999999974
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-42 Score=361.15 Aligned_cols=216 Identities=30% Similarity=0.410 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 48899999998 3457999999999999999999999999999999999998875 8999999986421
Q ss_pred --------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
.++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..|+. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988543211 123444556788999999998776664 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.+++|++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987899999999996 5788899999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 87654
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-42 Score=358.70 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=186.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 6899999988 3467999999999999999999999999999999999999875 8999999987431
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..++.+ +.||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHH
Confidence 13468999999999999999999988642111 1234445567889999999987767644 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 577889999999999999999987754
No 70
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-42 Score=373.81 Aligned_cols=225 Identities=26% Similarity=0.386 Sum_probs=191.8
Q ss_pred eeEEEEEeEEEEEEccCC--------ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
...|+++||++.|..+.+ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. +|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECC
Confidence 346999999999953211 2357999999999999999999999999999999999999875 89999999
Q ss_pred EecCc--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 005252 121 HKTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (706)
Q Consensus 121 ~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~ 189 (706)
++... .++.++||+|++ .+++.+||.||+.+......+ ..++++.++++.++++.+||. +..++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~---- 157 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR---- 157 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC----
Confidence 87421 135799999997 688899999999987543211 235566677889999999994 34454
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 190 ~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
++.+|||||||||+||+||+.+|++||+||||+|||..++.++++.|+++.++ |.|+|++|||+ ..+.+++|+|++|
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 56689999999999999999999999999999999999999999999999874 89999999996 5788899999999
Q ss_pred eCCeEEEEcCchhHH
Q 005252 269 SGGKTVYFGETSAAF 283 (706)
Q Consensus 269 ~~G~iv~~G~~~~~~ 283 (706)
++|++++.|+++++.
T Consensus 236 ~~G~ive~g~~~~i~ 250 (331)
T PRK15079 236 YLGHAVELGTYDEVY 250 (331)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999987654
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=364.29 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999883 2356999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. .+...||+||+.|..... ..+..+.+++++++++.+||.+..++.+ ..|||||||||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHH
Confidence 1356999999963 344579999999875421 2334455567899999999987777754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|++++.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999996 567889999999999999999998653
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=359.40 Aligned_cols=214 Identities=27% Similarity=0.461 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCCcc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 52 LTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
++++|+++.+. . +.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 46789999883 3 56999999999999999999999999999999999999875 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+||+||+.+..... ....++..+.+.++++.+||.+ ..++. ++.|||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHH
Confidence 1346899999999999999999999875432 2234455667889999999985 55553 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|++++.|++++.
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999874 89999999997 568899999999999999999987654
No 73
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.8e-42 Score=364.01 Aligned_cols=216 Identities=25% Similarity=0.420 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhh
Confidence 58999999988 3467999999999999999999999999999999999999885 8999999986421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++|++|++.+++.+||.||+.+...... ..+.++.++++.++++.+||.+..++.+ ..||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 151 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARR 151 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 12469999999999999999999988643211 1234444567888999999988777754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 89999999996 57889999999999999999998775
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 231 ~ 231 (269)
T PRK11831 231 L 231 (269)
T ss_pred H
Confidence 4
No 74
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=367.98 Aligned_cols=220 Identities=25% Similarity=0.387 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++||++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 58999999999422111256999999999999999999999999999999999999886 8999999987521
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
.++.+|||+|++ .+++ .||.||+.|+.... ..+.++..+++.++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGG 149 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHH
Confidence 135699999986 4665 49999999875432 234556667889999999996 566664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|++++.|
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976 589999999996 5788999999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
++++..
T Consensus 229 ~~~~~~ 234 (286)
T PRK13646 229 SPKELF 234 (286)
T ss_pred CHHHHH
Confidence 987654
No 75
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=389.17 Aligned_cols=248 Identities=29% Similarity=0.385 Sum_probs=205.5
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEe
Q 005252 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (706)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (706)
|++.||++.+..++++++.... +. +..+....+++.++.+||++.++ +++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~-------------~~--~~~~~~~~~~~ei~~~~l~~~y~----~g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPG-------------SG--EKAEVANEPPIEISLENLSFRYP----DGKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCC-------------Cc--cccccccCCCceeeecceEEecC----CCCcccCCceeEec
Confidence 5678999999999987766321 00 11122334567788889999985 33489999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
+|+.+||+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++.+|+. |+|||+.++..
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~- 420 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP- 420 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-
Confidence 99999999999999999999999999985 9999999987432 24789999999999998 99999998632
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 156 RLPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..++ +.+.+++++.||. +..|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++
T Consensus 421 ----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 421 ----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred ----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 1233 3345555555553 467889987 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..|++.|.+++++ +|||++||++. ...-+|+|++|++|+++..|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 99999999974 567899999999999999999987753
No 76
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-42 Score=377.79 Aligned_cols=205 Identities=23% Similarity=0.328 Sum_probs=183.5
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CcCcEEEEecCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDD 137 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---------~~~~~~yv~Q~~ 137 (706)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++... +++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3467999999999999999999999999999999999999885 9999999987531 135799999999
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEE
Q 005252 138 NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (706)
Q Consensus 138 ~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~lll 217 (706)
.+++++||+||+.|..... ..++++..+++.++++.+||++..++. +..|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999986543 244566778899999999998777764 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||||++||+.++..+.+.|+++.+ .|+|||++||++ +++.+++|+|++|++|+++..|++++..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999976 489999999996 6789999999999999999999988764
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7e-43 Score=361.21 Aligned_cols=218 Identities=30% Similarity=0.389 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++||++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899999882 1467999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--P---DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
.++.++|++|++.+++.+||+||+.++..... . ......+.++++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13469999999999999999999987532100 0 0011233456788999999998766664 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999976 489999999996 5678899999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87653
No 78
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.6e-43 Score=352.72 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=179.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|+++|+++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... .++
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999988 3467999999999999999999999999999999999999875 8999999986431 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+||+||+.+..... .. .+++++++++.++|++..++.+ ..|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 11 1356788999999988777654 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++ .++.+++|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999997 5678899999999999998765
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=381.77 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=190.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 58999999998 3578999999999999999999999999999999999999885 8999999987432
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++||+|++.+++.+||+||+.++....... ....++.+++++++++.+||.+..++.+ ++||||||||+.
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999989999999999864211100 0112344567899999999998888755 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+|+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987899999999996 6788999999999999999999998753
No 80
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.5e-43 Score=406.22 Aligned_cols=246 Identities=25% Similarity=0.354 Sum_probs=195.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|++||.++++.+++.+. .+ .. ..+......++++|+++.+. +++++|+|+|++++|
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~---~~-----------~~--~~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ---QG-----------EK--ELASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC---CC-----------cc--ccCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 578999999999986654211 00 00 00001123599999997653 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+++|+|.+ |. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 74 8999999987532 24679999999999988 99999998631
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
..++++..+. .++.++ .|++..||.+|+. ...||||||||++|||||+++|+||+||||||+||+.++.
T Consensus 449 ---~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 449 ---DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred ---CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 2233332222 222232 2455779999974 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
.+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++.|+.++..
T Consensus 523 ~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 523 LVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999885 4799999999974 46789999999999999999987665
No 81
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=359.27 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++.......++
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 7899999988 3367999999999999999999999999999999999999885 8999999987543334589
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 123444556789999999998776664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe--CCeEEEEcCch
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~--~G~iv~~G~~~ 280 (706)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++.++||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999864 589999999997 57889999999998 59999887654
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=357.79 Aligned_cols=216 Identities=24% Similarity=0.460 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48899999988 3467999999999999999999999999999999999999885 8999999987431
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++|++|++.+++.+||+||+.+..... .....++.+.+++++++.+|+.+..++. ++.|||||||||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 1246999999999999999999998764332 1123344556788999999998766654 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999987899999999996 578899999999999999999987754
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-42 Score=351.55 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999883 2257999999999999999999999999999999999998875 8999999986431
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||++..++.+ .+||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHH
Confidence 1246999999999999999999999875432 1234445567889999999987777644 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999987799999999996 567789999999999974
No 84
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.2e-42 Score=354.17 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=184.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 6789999988 3467999999999999999999999999999999999999885 8999999986421 12
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+|++||+.+....+ ....++..+.+.++++.+||++..++.+ ..||||||||++||+
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999998888899999998765432 2233444567889999999987777754 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++. ++. .+|++++|++|++++.|++++..
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 5899999999974 554 59999999999999999876554
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.1e-42 Score=350.95 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=178.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 68999999883 2357999999999999999999999999999999999998875 8999999987531
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+||+||+.+..... .....+.+++++++++.++|.+..++.+ ..||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987666644 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999987899999999997 57888999999999885
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-42 Score=352.95 Aligned_cols=215 Identities=27% Similarity=0.335 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++||++.+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEG-SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCC-CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 48999999988421 01256999999999999999999999999999999999999875 8999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
..+.++|++|++.+++.+||+||+.+..... ....++.++++.++++.+||.+..++.+ ..|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 1146999999999999999999999875432 1233445567899999999987766644 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999997 45544 689999999999988864
No 87
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=356.46 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=185.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++..
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccc
Confidence 58899999998 3467999999999999999999999999999999999999875 899999998641
Q ss_pred -----cCcCcEEEEecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 125 -----LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 125 -----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
..++.++|++|++.+++.+||+||+.+.. ... ....++..+++.++++.+||.+..++.+ +.||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G 145 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGG 145 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 01246899999999999999999997532 221 1233444567889999999987777644 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.+++|++++|++|++++.|+
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999999997 56778999999999999999998
Q ss_pred chh
Q 005252 279 TSA 281 (706)
Q Consensus 279 ~~~ 281 (706)
+++
T Consensus 225 ~~~ 227 (242)
T PRK11124 225 ASC 227 (242)
T ss_pred HHH
Confidence 764
No 88
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=350.35 Aligned_cols=220 Identities=27% Similarity=0.388 Sum_probs=196.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++.++|++++ +.-.+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++..
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 57899999999 6788999999999999999999999999999999999999996 8999999997532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLR--------LPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (706)
.+..++.-+|...+|++|||.||+..++..+ .+.. ...++..+++.++|+.+||.+.+|+..| +|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cC
Confidence 1245788999999999999999999886533 1111 1345667889999999999999999877 49
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
|+||+||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++-|+. ..++.+||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999999999999999998 579999999996 6899999999999999999
Q ss_pred EEcCchhHHH
Q 005252 275 YFGETSAAFE 284 (706)
Q Consensus 275 ~~G~~~~~~~ 284 (706)
+.|+|+++.+
T Consensus 230 AeG~P~eV~~ 239 (250)
T COG0411 230 AEGTPEEVRN 239 (250)
T ss_pred ccCCHHHHhc
Confidence 9999998764
No 89
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=350.56 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++.+ +.+.+|+|+|+++++| +++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 i~~~~~~~~~-----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRY-----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEE-----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 4689999988 3357999999999999 99999999999999999999999885 8999999976432 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+..... ..+.++..+.++++++.+||.+..++.+ ..||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56899999999999999999999875543 1233444567889999999987777654 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5677899999999999998765
No 90
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-44 Score=344.21 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=196.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|..+||.++| ++++++++||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58889999998 5688999999999999999999999999999999999999997 9999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.+..+||+||++..|..|||+||+......+... ..+++.+.+++++|++++|.++++++- ..||||||||+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 1235899999999999999999999887776322 233466677899999999999998864 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|||||+.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-|.. .|...+|||.+++++|++.++|++++..+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999997 47899999999999999999999988753
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=363.04 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+.. +..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 5899999999841 11246999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++||+|++ .+++..||+||+.|+.... ..+.++..++++++++.+||++..++.+ ..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHH
Confidence 125689999997 4667789999999875432 2445566678899999999987777654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|++++..
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999875 99999999996 455 589999999999999999987654
No 92
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=359.41 Aligned_cols=226 Identities=29% Similarity=0.396 Sum_probs=195.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEec------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKT------ 123 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~-~~~~~G~I~~~G~~~------ 123 (706)
|+++||++.+....+ ...+++||||++++||++||+|+|||||||+.++|.|+++ + ....+|+|.++|++.
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999975432 4679999999999999999999999999999999999997 4 446789999999852
Q ss_pred ---CcCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 124 ---KLSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 124 ---~~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
+.+.+.+++|+|++ .|.|.+||.+.+.-..+... .. .+++.++++.++|+.+||.+... +-+.++.+|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSG 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCC
Confidence 12346799999996 68899999999888766432 22 46677889999999999976321 22458999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||. .-+.++||||++|..|++|+.
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999999987 699999999996 578999999999999999999
Q ss_pred cCchhHH
Q 005252 277 GETSAAF 283 (706)
Q Consensus 277 G~~~~~~ 283 (706)
|++++..
T Consensus 236 g~~~~i~ 242 (316)
T COG0444 236 GPVEEIF 242 (316)
T ss_pred CCHHHHh
Confidence 9998654
No 93
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=363.88 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++||++.+..+....+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 47899999988421111256999999999999999999999999999999999999886 8999999987421
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
..+.++|++|++ .++ .+||+||+.+..... ....++..++++++++.+||. +..++.+ +.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHH
Confidence 124689999996 355 579999998865432 233455567789999999996 5666654 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999999996 57889999999999999999999
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
+++..
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 87654
No 94
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.2e-42 Score=355.31 Aligned_cols=216 Identities=27% Similarity=0.402 Sum_probs=184.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~---- 125 (706)
++++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 6899999988 3456999999999999999999999999999999999998763 1127999999987531
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCChH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSGG 198 (706)
.++.++|++|++.+++ +||+||+.+....+ ...+.++..+.++++++.+||. +..++ .++.||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999998888 89999999875432 1123445556788999999997 44555 44579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|||++||++ .++.+++|++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999774 8999999996 57889999999999999999998
Q ss_pred chhH
Q 005252 279 TSAA 282 (706)
Q Consensus 279 ~~~~ 282 (706)
+++.
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 7754
No 95
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=355.14 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+||+||+.++.... ...+..+.++++++.+ ++.+..++. ++.||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998864321 1222344567777777 476555553 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999988899999999996 5788999999999999999999887653
No 96
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=357.44 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 38999999998 3467999999999999999999999999999999999999875 8999999986421
Q ss_pred -------------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 005252 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (706)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~ 191 (706)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+||.+.. ++ .
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12468999999999999999999987542111 123445567788999999997653 44 3
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 457999999999999999999999999999999999999999999999987899999999996 5778899999999999
Q ss_pred eEEEEcCchhH
Q 005252 272 KTVYFGETSAA 282 (706)
Q Consensus 272 ~iv~~G~~~~~ 282 (706)
++++.|+.++.
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999987654
No 97
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.9e-42 Score=351.41 Aligned_cols=220 Identities=46% Similarity=0.705 Sum_probs=183.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CcCc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (706)
+.|+|+++.+...+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++++...+|+|.++|++... .++.
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 67999999885321 13689999999999999999999999999999999999987211248999999987532 2356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
++|++|++.+++.+||+||+.+.+....+.....+...+++++ .++.+++.+..++. ++.||||||||++||++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 157 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHH
Confidence 9999999999999999999998765432222222233344555 88889988766664 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998778999999999755789999999999999998865
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-42 Score=358.78 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999998 3467999999999999999999999999999999999999885 899999998754334679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++. +..||||||||++||++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~---~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK---G------QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc---c------hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987521 0 1235678899999998776664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5678899999999999999988754
No 99
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-42 Score=363.19 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=184.9
Q ss_pred EEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------
Q 005252 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (706)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------- 125 (706)
.++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 556777776 4567999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1233445567889999999987777755 46999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.+++|++++|++|++++.|++++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 489999999996 578899999999999999999987754
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
No 100
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-42 Score=360.41 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+.......+++|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 48899999988421111246999999999999999999999999999999999999885 8999999987421
Q ss_pred ----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 198 (706)
.++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..++. +..||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 149 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSGG 149 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHH
Confidence 124689999996 4555 59999998865432 1234445567889999999963 45554 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999999996 57888999999999999999999
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13649 229 PKDIF 233 (280)
T ss_pred HHHHh
Confidence 87653
No 101
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.6e-42 Score=356.14 Aligned_cols=215 Identities=30% Similarity=0.380 Sum_probs=185.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRF-----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEe-----CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999986421
Q ss_pred ------------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005252 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (706)
Q Consensus 126 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (706)
..+.++|++|++.+++..||.||+.++.... ......+..+.+.++++.+|+.+..++. ++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hh
Confidence 1346999999999999999999998864211 1123445556788999999998776664 45
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999874 89999999997 57888999999999999
Q ss_pred EEEEcCchhH
Q 005252 273 TVYFGETSAA 282 (706)
Q Consensus 273 iv~~G~~~~~ 282 (706)
+++.|+.++.
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987654
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=356.61 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999988 3467999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-----------C-CCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-----------D-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----------~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (706)
....++|++|++.+++.+||+||+.++...... . .....+..+.+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 123489999999999999999999986431110 0 0011233456788999999987777654
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999996 5788999999999999
Q ss_pred eEEEEcCchhH
Q 005252 272 KTVYFGETSAA 282 (706)
Q Consensus 272 ~iv~~G~~~~~ 282 (706)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999987754
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.6e-42 Score=353.81 Aligned_cols=216 Identities=24% Similarity=0.402 Sum_probs=185.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.+...
T Consensus 3 i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 3 LYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred EEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHH
Confidence 7899999988 3457999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~ 149 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQK 149 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 124599999999999999999999986432100 0 0112344567899999999987777654 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999999976 69999999996 5788899999999999999999876
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=359.41 Aligned_cols=215 Identities=30% Similarity=0.420 Sum_probs=184.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 7899999988 3467999999999999999999999999999999999999885 8999999987521
Q ss_pred -CcCcEEEEecCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..++.+ ..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHH
Confidence 12469999999753 34458999998864432 2234445567888999999987777654 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|++++..
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 5778899999999999999999987653
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.6e-42 Score=348.74 Aligned_cols=206 Identities=31% Similarity=0.432 Sum_probs=178.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSF-----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEE-----CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 4689999988 3367999999999999999999999999999999999999875 8999999987521
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+|+.+..++.+ ..||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHH
Confidence 13569999999999999999999988643111 1234445567889999999987767654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987889999999996 578889999999999974
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.5e-42 Score=348.24 Aligned_cols=201 Identities=30% Similarity=0.414 Sum_probs=172.0
Q ss_pred EEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--cCcCcEE
Q 005252 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFGTAA 131 (706)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~~~~~ 131 (706)
++|+++.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++.. ...+.++
T Consensus 2 ~~~l~~~~~----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYK----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeC----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceE
Confidence 578888883 1167999999999999999999999999999999999999885 899999998742 1235699
Q ss_pred EEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 132 YVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 132 yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
|++|++. .+..+||+||+.+..... . . ..++++++++.+||.+..++.+ +.||||||||++|||+|+
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~ 142 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHH
Confidence 9999974 234579999998864321 1 1 1256789999999988777654 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999987899999999997 5678899999999999874
No 107
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=360.81 Aligned_cols=228 Identities=27% Similarity=0.448 Sum_probs=192.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 589999999983 2356999999999999999999999999999999999999885 8999999987521
Q ss_pred --CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
.++.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHH
Confidence 1256999999973 234569999998865422 2345555677899999999988777654 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 56778999999999999999999887
Q ss_pred HHH---HHHhcCCCCC
Q 005252 282 AFE---FFAQAGFPCP 294 (706)
Q Consensus 282 ~~~---~f~~~g~~~p 294 (706)
... .+...+.++|
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 229 VFAEKEMLRKVNLRLP 244 (283)
T ss_pred HhcCHHHHHHcCCCCC
Confidence 643 3344555544
No 108
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=375.70 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=179.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------CcCcEEEEecCCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDNL 139 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---------~~~~~~yv~Q~~~l 139 (706)
..+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.+||++... .++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34899999999999999999999999999999999999886 8999999987431 12469999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 005252 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllD 219 (706)
++.+||+||+.+....+ ..+.++.++++.++++.+||.+..++. ++.|||||||||+|||+|+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999986543 233455567889999999998877764 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 220 EPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+++|++++|++|+++..|++++..
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999976 589999999996 5788999999999999999999887653
No 109
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.2e-42 Score=349.15 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=179.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 68899999883 2357999999999999999999999999999999999999875 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|++.+++.+||+||+.+..... ..+.++..+.++++++.++|.+..++. +..||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1256899999998888899999999875432 223444456788899999998766664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++ +++.+.+|++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999987789999999996 5788899999999999985
No 110
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.1e-42 Score=353.54 Aligned_cols=219 Identities=28% Similarity=0.380 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 125 (706)
|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+. +|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE-----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 4689999998 3467999999999999999999999999999999999995 453 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---~-~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
....++|++|++.+++.+|++|++.+....... . .....+..+++.++++.+||. +..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886542211 0 112233456788999999997 35555432 249999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~G 277 (706)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++... +|++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987889999999997 567777 8999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
++++..
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
No 111
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-41 Score=366.96 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=192.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++||++.+..+. +...+|+||||++++||+++|+|+||||||||+++|+|+++++...+|+|.++|++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3699999999985321 23569999999999999999999999999999999999998743348999999987421
Q ss_pred -----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
+.+.++||+|++ .+++.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124699999998 68899999999987654321 23455666788999999999753322 2 2467899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||+||+.+|++||+||||+|||..++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999874 89999999996 5677899999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
++++..
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 988764
No 112
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=366.20 Aligned_cols=222 Identities=24% Similarity=0.297 Sum_probs=190.1
Q ss_pred EEEEEeEEEEEEccCC-----ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc
Q 005252 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 125 (706)
.|+++||++.|..+.+ +...+|+|||++|++||+++|+|+||||||||+++|+|++++. +|+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 5899999999853211 1357999999999999999999999999999999999999875 8999999987421
Q ss_pred --------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 005252 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (706)
Q Consensus 126 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~ 194 (706)
.++.++||+|++ .+.+.+||.+++........ ...+++.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2345566678999999999963 4555 5568
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|||||||||+||+||+.+|++||+||||++||..++..+++.|+++++ .|.|+|++|||. ..+.+++|+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 499999999996 577789999999999999
Q ss_pred EEEcCchhHH
Q 005252 274 VYFGETSAAF 283 (706)
Q Consensus 274 v~~G~~~~~~ 283 (706)
++.|+.+++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999987764
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9e-42 Score=347.95 Aligned_cols=209 Identities=26% Similarity=0.369 Sum_probs=176.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+..+ .+.+++|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 6789999988421 11256999999999999999999999999999999999999885 8999999987421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ ..||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 1146999999999999999999999865432 1223344567889999999987766644 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++ +.+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999986 4899999999974 55 458999999999975
No 114
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.6e-42 Score=350.04 Aligned_cols=209 Identities=33% Similarity=0.462 Sum_probs=174.2
Q ss_pred EEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEE
Q 005252 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (706)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv 133 (706)
++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSY-----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEE-----CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 57888888 2357999999999999999999999999999999999999885 899999998653223569999
Q ss_pred ecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 134 TQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 134 ~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+|++.+. ..+||+||+.+....... .....++.+++++++++.+||.+..++.+ ..||||||||++||++|+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 9998763 347999999886432110 00112334567889999999987677654 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++ +++.+++|++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 5788899999999876 66554
No 115
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=353.49 Aligned_cols=223 Identities=27% Similarity=0.356 Sum_probs=184.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC---c
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---L 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~---~ 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|++.. .
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 58899999998 3457999999999999999999999999999999999998763 124899999998753 1
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++.+||.||+.+....+. ...+.++..++++++++.+||........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHH
Confidence 12469999999999999999999998754321 01123444567888999999853211111 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 69999999996 57888999999999999999998775
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 235 ~ 235 (253)
T PRK14267 235 V 235 (253)
T ss_pred H
Confidence 5
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=355.41 Aligned_cols=216 Identities=32% Similarity=0.444 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +++.+|+|+|+++++|++++|+|||||||||||++|+|+.+|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 47899999988 3467999999999999999999999999999999999998875 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
..+.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888889999998864321 1122334456889999999987777754 5799999999999
Q ss_pred HHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 206 a~aL~------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++ .++.++||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5789999999996 57888999999999999999998
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
+++..
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 76543
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=357.37 Aligned_cols=224 Identities=30% Similarity=0.380 Sum_probs=187.9
Q ss_pred CCCceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 005252 45 SGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (706)
Q Consensus 45 ~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 124 (706)
++.....|+++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|.++|. +|+|.++|++..
T Consensus 5 ~~~~~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~ 76 (265)
T PRK10575 5 TNHSDTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLE 76 (265)
T ss_pred cCCCCceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehh
Confidence 33334469999999988 3467999999999999999999999999999999999998875 899999998642
Q ss_pred c-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 125 ~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
. ..+.++|++|+..+++.+||.||+.+....... .........++++++++.++|.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 151 (265)
T PRK10575 77 SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGG 151 (265)
T ss_pred hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHH
Confidence 1 134699999998888889999999875321110 00112233466889999999987777754 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.+|++++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999764 89999999996 5788999999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
+.++.
T Consensus 231 ~~~~~ 235 (265)
T PRK10575 231 TPAEL 235 (265)
T ss_pred CHHHh
Confidence 87654
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.2e-42 Score=346.70 Aligned_cols=204 Identities=31% Similarity=0.454 Sum_probs=173.2
Q ss_pred EEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcC
Q 005252 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (706)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (706)
++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.+||++... ..+
T Consensus 2 ~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHh
Confidence 6788888731 1257999999999999999999999999999999999999885 8999999986432 125
Q ss_pred cEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 129 TAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 129 ~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
.++|++|++. .++.+||+||+.+..... .....+.++.++++++.+||.+..++.+ ..|||||||||+|||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~lar 147 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAG 147 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHH
Confidence 6899999974 356789999998865432 1233444567889999999987666644 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987799999999996 57888899999999885
No 119
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.8e-42 Score=398.57 Aligned_cols=246 Identities=30% Similarity=0.439 Sum_probs=202.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+|....-. .+ .......++++|+++.|. +++++|+|+|++++|
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 57899999999999877643211 11 111223499999999993 257899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+|+|.|+++|. +|+|.+||.+++. .++.++||+||+.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999985 8999999988542 24679999999999995 999999997431
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
.++++..+. +.+.++. +.+..||.+|+ ....||||||||++||||++++|++|+||||||+||+.+..
T Consensus 430 ----at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIAN--LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHHh--CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 233333332 3344443 46678999995 55679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.+.+.++++. +|+|+|+++|+++ .+ +.+|+|++|++|++++.|+.++...
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999887 5689999999984 44 4499999999999999999988765
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=354.96 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 12 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 12 QIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 59999999988 34679999999999999999999999999999999999987521 248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCh
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSG 197 (706)
..+.++|++|++.+++ +||+||+.+..... ..+.++.+++++++++.+++. +..++ .+..|||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSg 157 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLSG 157 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCH
Confidence 1346999999998888 89999999875432 123444456788899999984 33344 4457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 79999999996 5778899999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 88754
No 121
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-41 Score=348.29 Aligned_cols=214 Identities=31% Similarity=0.412 Sum_probs=176.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 6789999988311 01136999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCChHH
Q 005252 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++ .+++.+||+||+.+........ ..++..+. ++++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 134699999998 5677899999998865432111 12222222 36888999995 455554 45799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999997 5677899999999999998754
No 122
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=356.33 Aligned_cols=220 Identities=29% Similarity=0.429 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 58999999988 34679999999999999999999999999999999999998753346999999986421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (706)
..+.++|++|++.+++.+||+||+.+......+. ....++.+++++++++.+||.+..|+.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1246899999999999999999998764211000 0112334567899999999987777754 469
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||||+|||+|+.+|++|+|||||+|||..++..+.+.|+++++ +|+|||++||++ +++.+++|++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 489999999996 5688999999999999999
Q ss_pred EEcCchh
Q 005252 275 YFGETSA 281 (706)
Q Consensus 275 ~~G~~~~ 281 (706)
+.|++++
T Consensus 233 ~~g~~~~ 239 (262)
T PRK09984 233 YDGSSQQ 239 (262)
T ss_pred EeCCHHH
Confidence 9998764
No 123
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-42 Score=355.69 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58899999988 3467999999999999999999999999999999999998875 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|+..+++.+|+.||+.++...... .....++..++++++++.+||.+..++.+ ..||||||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHH
Confidence 124699999999888889999999886321000 01112334466888999999987777654 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|+++..|+.++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987799999999997 578899999999999999999987654
No 124
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-42 Score=340.01 Aligned_cols=216 Identities=27% Similarity=0.418 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|..++. +|+|.++|+++..
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 58999999998 5688999999999999999999999999999999999999885 8999999998532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.+..++||||...+|+.|||+|||..++..+.. ++..+..++++.+.+- |.+..+++-| .|||||+|.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 135699999999999999999999998654321 1112222666766664 6666777666 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++ .....+++||.++|.+|+++++|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-ARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 7799988877 5678999999999999999999999876
Q ss_pred HH
Q 005252 283 FE 284 (706)
Q Consensus 283 ~~ 284 (706)
..
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
No 125
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=351.91 Aligned_cols=223 Identities=28% Similarity=0.366 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 48899999988 3457999999999999999999999999999999999998742 1248999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|++.+++.+||+||+.+....... ....++..+.+.++++.+||.+..+... +..+.+||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHH
Confidence 135699999999888899999999987543211 1123445567889999999864211111 224567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ .++.+++|++++|++|++++.|++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999965 79999999997 567889999999999999999988765
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=355.98 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 78999999883 2356999999999999999999999999999999999999885 8999999987521
Q ss_pred -CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+ +.||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1356999999963 333469999998764321 2334555677889999999988777754 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++++..
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 5788899999999999999999988764
No 127
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=357.32 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999998831 2356999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++ .++...||.||+.+..... ..+.++.+++++++++.+||.+..++.+ ..|||||||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 3666789999999875432 2344555677899999999988777754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++. .||++++|++|++++.|++++..
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999974 554 59999999999999999987654
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=359.14 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++||++.+. +.+.+|+||||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 67899999883 2356999999999999999999999999999999999999875 8999999987531
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+ +.||||||||++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHH
Confidence 1246999999975 356679999998875432 2345555677899999999988777754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++ ..+|++++|++|++++.|++++..
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999878999999999974 56 679999999999999999987653
No 129
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=353.38 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEcc-------------------CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005252 50 ARLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA 110 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~ 110 (706)
..++++|+++-+..+ +.+...-++|+|++++.||+..|||-||||||||+++|.++.+|.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept- 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT- 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-
Confidence 358889998877532 112234579999999999999999999999999999999999986
Q ss_pred CceeEEEECCEecC---------cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005252 111 FLSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (706)
Q Consensus 111 ~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (706)
+|+|+++|.++. .+++.++.|+|+..|+|+.||.||..|+..++ .++++++++++.++|+.+||++
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 999999998741 23567999999999999999999999998876 6789999999999999999999
Q ss_pred cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHh
Q 005252 182 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFE 260 (706)
Q Consensus 182 ~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~ 260 (706)
..+. ++++|||||||||.|||||+.+|+||++|||+|+|||--+.++.+.|.+|.+ -++|||++|||. +|.++
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 9887 5678999999999999999999999999999999999999999999999976 489999999995 79999
Q ss_pred hCCeEEEEeCCeEEEEcCchhHHH
Q 005252 261 LFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 261 ~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+.|||.+|++|+++..|+|+|.+.
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHc
Confidence 999999999999999999998764
No 130
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=364.17 Aligned_cols=227 Identities=23% Similarity=0.294 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCc----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~---- 125 (706)
.|+++||++.|..+ ++...+|+||||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 3 ~L~v~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 48999999998421 112569999999999999999999999999999999999987421 358999999987421
Q ss_pred -----CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
+.+.++||+|++ .+.+.+||.+++........ ....++.++++.++++.+||.+..+. . +.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~-l-~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR-L-DVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH-H-hCCchhCCHH
Confidence 123699999997 57899999999877654321 23455667789999999999752111 1 2356789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||+||+.+|++||+||||+|||+.++..+++.|+++++ .|.|+|++|||. ..+.+++|+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999986 589999999996 5678899999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 987764
No 131
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-41 Score=346.79 Aligned_cols=208 Identities=29% Similarity=0.446 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-cCcE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~ 130 (706)
|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|++.... .+.+
T Consensus 1 l~l~~v~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRF-----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 4689999988 3467999999999999999999999999999999999998875 89999999874321 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+|++|++.+++.+|++||+.+...... .. ..++.++++.+||++..|+.+ ..||||||||++||++++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHh
Confidence 999999999998999999988654321 11 245778899999987777654 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.+.+|++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999987899999999997 5788999999999999999999865
No 132
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=352.57 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 58999999998 33569999999999999999999999999999999999987631 248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCh
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSG 197 (706)
.++.++|++|++.+++ +||+||+.+...... .....+.++++.+.++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112334456788889998873 33444 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ +++.+++|++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999997 5778999999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
++++..
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 887653
No 133
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=351.58 Aligned_cols=221 Identities=26% Similarity=0.343 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.. +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 48999999998 34579999999999999999999999999999999999864 211248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||+||+.+....+. ....++.+++++++++.+|+.+...+.. +..++.|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13569999999988884 99999998754321 1123344567888999999854222222 1245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++.+++|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 57889999999999999999998765
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 4
No 134
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-41 Score=371.12 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=181.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----cC-c--------CcCcEEEE
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TK-L--------SFGTAAYV 133 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~----~~-~--------~~~~~~yv 133 (706)
+...+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|++ .. . +.+.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467899999999999999999999999999999999999885 8999999962 11 0 12469999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005252 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (706)
Q Consensus 134 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p 213 (706)
+|++.+++.+||+||+.++...+ ..++++.++++.++++.+||.+..|+.+ .+|||||||||+|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986543 2345666778999999999988777754 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 214 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|++++..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999874 89999999996 6788999999999999999999988764
No 135
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-41 Score=349.68 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.+ +.+++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYY-----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEe-----CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+..... ... ..+.++++++.++ +.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHH
Confidence 1246999999999999999999998875432 111 1234566777776 55555554 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999996 578889999999999999999988765
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=355.65 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+. +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 478999999883 2346999999999999999999999999999999999999885 8999999987432
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. .+...||.||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHH
Confidence 1246899999973 333579999998765421 2344555667899999999987777754 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.+.||++++|++|++++.|++++..
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 5788999999999999999999988764
No 137
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.3e-42 Score=403.44 Aligned_cols=242 Identities=27% Similarity=0.340 Sum_probs=197.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+. +. ..+ ......++++|++++|.. .++++|+|+|++++|
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~----~~----------~~~----~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE----AK----------TDP----GKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc----Cc----------CCC----CCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 578899999999986665321 00 000 011235999999999942 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||++.+. .++.++||+|++.+|+. |++||+.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998542 24679999999999987 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
.+. +.+.++++..|+ .+..||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234455555554 34678999874 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|++++.|+.++..+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 589999999974 467899999999999999999887653
No 138
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-39 Score=405.13 Aligned_cols=222 Identities=27% Similarity=0.388 Sum_probs=196.5
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--- 125 (706)
...|+++||++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 926 ~~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLD 999 (2272)
T ss_pred CceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHH
Confidence 347999999999831 2467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.+||++|++.+++.+||+||+.+.++++ ..+.++.+++++++++.+||++..|+.+ ++|||||||||+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLs 1071 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLS 1071 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1356999999999999999999999987654 2334455678999999999998888755 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+||+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ +++..++|||++|++|+++..|+++++.+
T Consensus 1072 LArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999995 599999999996 67889999999999999999999988876
Q ss_pred HH
Q 005252 285 FF 286 (706)
Q Consensus 285 ~f 286 (706)
.|
T Consensus 1150 ~~ 1151 (2272)
T TIGR01257 1150 CF 1151 (2272)
T ss_pred hc
Confidence 55
No 139
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.9e-41 Score=353.97 Aligned_cols=222 Identities=26% Similarity=0.336 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccC----CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 005252 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~- 125 (706)
.|+++||++.+.... .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 378999999984210 12467999999999999999999999999999999999999885 8999999987431
Q ss_pred -------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 005252 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 195 (706)
.++.++|++|++ .+++.+||+||+.+..... ......+.++++.++++.+||. +..++.+ .+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----RQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhC
Confidence 124699999996 4677899999998764321 1123334456788999999996 5566644 579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999874 89999999996 5778899999999999999
Q ss_pred EEcCchhHH
Q 005252 275 YFGETSAAF 283 (706)
Q Consensus 275 ~~G~~~~~~ 283 (706)
+.|++++..
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987653
No 140
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-42 Score=407.00 Aligned_cols=252 Identities=28% Similarity=0.421 Sum_probs=206.6
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEe
Q 005252 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (706)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (706)
+.|.+|+.+|+++.+..|..+... . ..+ ........++|+|++++|+.+ ++..||+|+|+.++
T Consensus 315 ~~a~~aa~~I~~~i~~~~~i~~~~-~----------~~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~ 377 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPSIDPYS-K----------GGR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIP 377 (1228)
T ss_pred hccccchHHHHHHhcCCCCCCccc-c----------cCC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeC
Confidence 368899999999999999876422 1 001 112234579999999999643 35689999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
+|+.+||+|||||||||++++|.++++|. +|+|++||.+++. .+..+|.|.|+|.||.. ||+||+.|+..-
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD 453 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc
Confidence 99999999999999999999999999996 9999999987532 24689999999998876 999999997421
Q ss_pred cCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 156 RLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 156 ~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
.+.++..+ .+.+.+ ..|.+..||.+|+..+ +||||||||++|||||++||+|||||||||+||+.+.
T Consensus 454 -----at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 454 -----ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred -----ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 22333222 233333 3467889999998544 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
..|.+.|.+.. +|+|.|+++|+.+ .+. .+|+|++|++|++++.|..+|+..
T Consensus 526 ~~Vq~ALd~~~-~grTTivVaHRLS-tIr-naD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 526 RVVQEALDKAS-KGRTTIVVAHRLS-TIR-NADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhh-cCCeEEEEeeehh-hhh-ccCEEEEEECCEEEEecCHHHHHh
Confidence 99999998875 5899999999964 554 499999999999999999998875
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-41 Score=352.50 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
|+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6789999988 3467999999999999999999999999999999999999875 8999999987432 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.+.++|++|++.+++.+||+||+.++...... .....++..+++.++++.+++.+..++.+ ..||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 24689999998877888999999885321000 00112233457889999999987777754 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|++|+.+|++++|||||+|||+.+...+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999997 578899999999999999999987654
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=353.79 Aligned_cols=221 Identities=29% Similarity=0.387 Sum_probs=187.3
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--- 125 (706)
...|+++||++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 5 VARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYAS 76 (265)
T ss_pred ccEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCH
Confidence 3469999999998 3467999999999999999999999999999999999999875 8999999986421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++|++|++.+++.+||+||+.+......+ .....+..+++++++++.+||.+..++. ++.||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHH
Confidence 124689999999999889999999875311100 0001123345788999999998766664 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987 489999999996 57899999999999999999998876
Q ss_pred HH
Q 005252 282 AF 283 (706)
Q Consensus 282 ~~ 283 (706)
..
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 53
No 143
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=349.29 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 489999999983 4679999999999999999999999999999999999985 321248999999987521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++.+||+||+.+..... ......+.+++++++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998764432 112234445678889999998642211111 245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 57889999999999999999998775
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 4
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=348.98 Aligned_cols=222 Identities=24% Similarity=0.333 Sum_probs=182.5
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEecCc-
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~~G~~~~~- 125 (706)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 2 ~~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 368899999988 3467999999999999999999999999999999999973 331 248999999987531
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.+++ .|++||+.+....+. ....+...+.++++++.+||.+...+... ..+..|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~ 151 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHH
Confidence 1346999999998887 599999988754321 11223345678889999998653222221 2456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999995 479999999996 568899999999999999999988
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
++..
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 7654
No 145
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=342.71 Aligned_cols=207 Identities=29% Similarity=0.412 Sum_probs=176.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
++++|+++.+. .+. .|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46899999883 232 3999999999999999999999999999999999875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+||+||+.+...... .. .++.+++++++++.+||.+..++.+ .+||||||||++||++
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 2234567889999999987777654 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999976 489999999996 5788899999999999998654
No 146
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-41 Score=345.97 Aligned_cols=214 Identities=29% Similarity=0.437 Sum_probs=186.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|.++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~-----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFY-----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 4689999988 3467999999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+|++||+.+....+ ........+.++++++.+||.+..++.+ +.||||||||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999998875533 1223444567889999999987777644 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999874 89999999996 568899999999999999999876544
No 147
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.7e-41 Score=347.53 Aligned_cols=215 Identities=30% Similarity=0.462 Sum_probs=187.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRF-----GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEE-----CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 4689999988 3457999999999999999999999999999999999998875 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.+ +.|||||+||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999998875432 1223444567889999999987777654 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+.+|++++|||||+|||..++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++.|+.++..
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999875 89999999997 5788999999999999999999877653
No 148
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-41 Score=354.88 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|....+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999998831 23469999999999999999999999999999999999998752123999999987532
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. +++..||+||+.|..... ..+.++..++++++++.+||.+..++. ++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246899999974 567789999998864322 234556667889999999998777764 4679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 899999999974 55 579999999999999999987754
No 149
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=325.45 Aligned_cols=220 Identities=28% Similarity=0.418 Sum_probs=195.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.+...+++.+|.. ..+.+|+|||+++.+||.++++||||||||||||+++|..+|. .|+|.+||+++.-....-
T Consensus 3 ~l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccc
Confidence 4667788888842 2355999999999999999999999999999999999999986 899999999876544456
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
|.|+|++.|+|.+||.||+.|+.+++ .++++++++++.+.+..+||++..+++| -+|||||||||.|||||.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa 148 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALA 148 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhh
Confidence 99999999999999999999998886 5778999999999999999998887755 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe--CCeEEEEcCchhHHHH
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF 285 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~--~G~iv~~G~~~~~~~~ 285 (706)
.+|++|+||||+++||.-+++++.++|-++.+ .|+.++++||+. +|..-+++++++|+ .|+++..=+++-...|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999999999999876 699999999995 68888999999998 6899988777644444
No 150
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.9e-41 Score=344.29 Aligned_cols=211 Identities=30% Similarity=0.360 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.|+++||++.+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQG-EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCC-CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 58999999988421 01135999999999999999999999999999999999999885 89999999874311
Q ss_pred -----cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.+.++|++|++.+++.+||.||+.+....+ ..+..+.++++.++++.++|.+..++.+ ..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 246999999999999999999998865432 1233445677899999999987766644 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 899999999974 55 5699999999999875
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=352.97 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. .+.+|+|.++|++...
T Consensus 19 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 19 KMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred eEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 69999999998 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..++++++++.+||.+...... +..++.|||||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 170 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQ 170 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 13468999999988875 999999987543210 1123344567889999999964211111 1245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999999996 57789999999999999999998765
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 249 ~ 249 (267)
T PRK14235 249 M 249 (267)
T ss_pred H
Confidence 4
No 152
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=350.88 Aligned_cols=223 Identities=25% Similarity=0.360 Sum_probs=183.6
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~- 125 (706)
...++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 3458999999998 23579999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+..|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHH
Confidence 1356999999998887 799999988754321 1234455567889999999843211111 12456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+++|++++|++|+++..|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 78999999996 567889999999999999999987
Q ss_pred hhH
Q 005252 280 SAA 282 (706)
Q Consensus 280 ~~~ 282 (706)
++.
T Consensus 240 ~~~ 242 (260)
T PRK10744 240 DTI 242 (260)
T ss_pred HHH
Confidence 765
No 153
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=348.37 Aligned_cols=222 Identities=26% Similarity=0.354 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 47889999998 34679999999999999999999999999999999999975322348999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.++|++|++.+++ .||+||+.++...+.. .....+.++++.++++.++|.+...... +..++.||||||||++|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 5999999987543210 0012344466788999999953221111 12456799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ +++.+.+|++++|++|++++.|+.++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999865 89999999996 578899999999999999999987754
No 154
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=393.36 Aligned_cols=245 Identities=27% Similarity=0.372 Sum_probs=197.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+. +.. .. .+..-.++++|+++.++. +.+++|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~----~~~---------~~-----~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE----GKR---------VI-----ERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC----CCc---------CC-----CCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 467889999999976544221 000 00 011225999999999842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 441 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR--- 441 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC---
Confidence 9999999999999999999999999986 8999999987532 24679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
++..+.+ ++++.++..| |++..||.+|+. .+.||||||||++|||+|+++|++|+||||||+||+.+
T Consensus 442 -~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 442 -TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1112232 3444444444 456679999974 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+++.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+.++..
T Consensus 516 ~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 516 ERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999885 4699999999973 57889999999999999999987764
No 155
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-41 Score=351.47 Aligned_cols=228 Identities=23% Similarity=0.339 Sum_probs=189.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999998831 2246999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. +++..|+++|+.+..... ....++..++++++++.+|+.+..++. ++.||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1346899999974 677789999998875422 223444556788999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.. +|++++|++|++++.|++++..
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 899999999974 5654 9999999999999999987653
Q ss_pred H---HHHhcCCCCC
Q 005252 284 E---FFAQAGFPCP 294 (706)
Q Consensus 284 ~---~f~~~g~~~p 294 (706)
+ .+...|.++|
T Consensus 231 ~~~~~~~~~~~~~~ 244 (269)
T PRK13648 231 DHAEELTRIGLDLP 244 (269)
T ss_pred cCHHHHHhcCCCCC
Confidence 2 3444455443
No 156
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-41 Score=350.34 Aligned_cols=221 Identities=22% Similarity=0.346 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++ |....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 58999999988 34679999999999999999999999999999999999986 321248999999987521
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||+||+.+..... .....++..++++++++.+++.+...... +..+.+|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13469999999988886 9999998865432 11123444567888999999854211111 1245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.+++|++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 57889999999999999999999876
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 241 ~ 241 (259)
T PRK14274 241 M 241 (259)
T ss_pred H
Confidence 5
No 157
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-41 Score=350.74 Aligned_cols=223 Identities=26% Similarity=0.338 Sum_probs=185.6
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~- 125 (706)
...|+++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3469999999998 3467999999999999999999999999999999999998642 1248999999987521
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.+++ .||+||+.++.... ....+++.++++.++++.++|.+..+.... ..++.|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-KSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCcccCCHHH
Confidence 1346999999998887 59999999875421 112344455678889999998643222222 2567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 79999999997 578899999999999999999998
Q ss_pred hhH
Q 005252 280 SAA 282 (706)
Q Consensus 280 ~~~ 282 (706)
++.
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 765
No 158
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.6e-42 Score=340.00 Aligned_cols=220 Identities=26% Similarity=0.443 Sum_probs=204.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGT 129 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~ 129 (706)
.|++++|++++ +++.+++|+||+++||++.+++|||||||||.+++|.|++.|+ +|+|.++|.+.... ..+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58899999999 6789999999999999999999999999999999999999986 99999999986433 467
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
|||+|.+..|++.+||.|.|.|.+.++ .+++++.++.++.+|+++++......+| ++||.|.+|++.+-.++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999986 6889999999999999999988777655 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHH
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~ 287 (706)
+++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|+. +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999999999999999999996 68999999999999999999999998887553
No 159
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=348.07 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58899999988 3457999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.+||. +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1134678899999996 44555 44579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987 489999999996 578889999999999999999988754
No 160
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-41 Score=373.55 Aligned_cols=227 Identities=31% Similarity=0.400 Sum_probs=200.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~----- 124 (706)
.|+++||+++|... ++...+++||||++++||++||+|+|||||||+.++|.|+++++ ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 69999999999754 33457999999999999999999999999999999999999876 456899999998521
Q ss_pred ----cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 125 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
.+.+.++||+|++ .+.|-+||.+.+.-....+.. .+.++.++++.++++.+||.+.... +.++++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1336799999996 566779999999887666532 3478888999999999999876554 5689999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+ .-+.++||||++|.+|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 699999999997 5788999999999999999999
Q ss_pred CchhHHH
Q 005252 278 ETSAAFE 284 (706)
Q Consensus 278 ~~~~~~~ 284 (706)
+++++..
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9998775
No 161
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=353.52 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=186.0
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.+||++...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHH
Confidence 46999999998831 2467999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++|++|++. .++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHH
Confidence 1356899999974 567789999998865422 2234445567899999999987777754 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|++++.
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999876 599999999974 45 47999999999999999988764
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 230 ~ 230 (271)
T PRK13632 230 L 230 (271)
T ss_pred h
Confidence 3
No 162
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-41 Score=354.32 Aligned_cols=219 Identities=26% Similarity=0.402 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEEccCC-ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 51 RLTWKDLTVMVTLSNG-ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
.|+++|+++++....+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 5899999999842111 1356999999999999999999999999999999999999885 8999999987531
Q ss_pred --CcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 --SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
..+.++|++|++. ++ ..||.||+.|..... ..+..+.+++++++++.+||++..++.+ +.|||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~q 151 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQ 151 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHH
Confidence 1356999999974 44 459999999875432 2345555677899999999988777754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||++. ++.. +|++++|++|++++.|+++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999976 4999999999974 5554 9999999999999999988
Q ss_pred hHH
Q 005252 281 AAF 283 (706)
Q Consensus 281 ~~~ 283 (706)
+..
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 764
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=356.32 Aligned_cols=220 Identities=21% Similarity=0.273 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.|+++||++.+..+.+..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999998421101135999999999999999999999999999999999999885 899999998642
Q ss_pred ----cCcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 125 ----LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 125 ----~~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
..++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++. ++.|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 01246899999973 444 59999999865321 123444456788899999994 556654 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999996 578899999999999999999
Q ss_pred cCchhHH
Q 005252 277 GETSAAF 283 (706)
Q Consensus 277 G~~~~~~ 283 (706)
|++++..
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9887653
No 164
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-41 Score=344.60 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=181.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
++++||++.+. .+ ..|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 68999999983 22 23999999999999999999999999999999999885 8999999987432 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++.+ +.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987532111 11 2234567899999999987777754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.+++|++++|++|++++.|+.++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999976 489999999996 5778899999999999999999876543
No 165
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.9e-41 Score=339.87 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
++++||++.+. .+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999882 2468999999999999999999999999999999999886 8999999987431 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++||++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987543211 1 1122345678899999998776664 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|+.+|++++|||||+|||..++..+.+.|++++++ |.|||++||++ .++.+++|++++|++|+++..|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999996 56788999999999999998875
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=360.11 Aligned_cols=229 Identities=19% Similarity=0.233 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCc----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~---- 125 (706)
.|+++||++.|..+. +.+.+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 488999999985321 2357999999999999999999999999999999999998642 2358999999987421
Q ss_pred -----CcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005252 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (706)
..+.++||+|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+..+. -+.++.+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--MRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--HhCCchhC
Confidence 1246999999975 6788999999986432111000 1123445678999999999753211 12356789
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|||++|||. ..+.+++|+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999874 99999999996 6788999999999999999
Q ss_pred EEcCchhHH
Q 005252 275 YFGETSAAF 283 (706)
Q Consensus 275 ~~G~~~~~~ 283 (706)
+.|++++..
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999987653
No 167
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-41 Score=392.44 Aligned_cols=246 Identities=28% Similarity=0.402 Sum_probs=200.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++||.++++.+|+.+... .+ .. . .....++++|+++.|.. +++.+|+|+|++++|
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~----~~---------~~---~-~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPT----TS---------TA---A-ADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCc----cc---------CC---C-CCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 57899999999998777532100 00 00 0 11235999999999842 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+|+|+|.++|+ +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999886 8999999987532 24579999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
..+. +.+.+.++..++. +..||.+|+ ....||||||||++|||+|+++|++|+||||||+||+.++
T Consensus 440 ---~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccCH----HHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1122 3456677777764 456888987 4567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
..+.+.|+++. +++|+|+++|+++ . .+.+|+|++|++|++++.|+.++..+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999986 4799999999984 3 46799999999999999999877653
No 168
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=348.56 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|.. +.+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 48899999998 34579999999999999999999999999999999999986421 248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (706)
.++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||.. ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 12569999999999999999999988754321 1123445567888999999842 3333 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe------CC
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~------~G 271 (706)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999996 57889999999997 79
Q ss_pred eEEEEcCchhHH
Q 005252 272 KTVYFGETSAAF 283 (706)
Q Consensus 272 ~iv~~G~~~~~~ 283 (706)
++++.|++++..
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887653
No 169
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=346.72 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYY-----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 48999999988 34679999999999999999999999999999999999853 421238999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++||+|++.+++ +||+||+.+..... . ....+..++.+.++++.+++.+...+.. +..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1346999999998887 79999999875432 1 1122334566788899998753211111 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 68999999996 57889999999999999999998876
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 234 ~ 234 (252)
T PRK14239 234 M 234 (252)
T ss_pred H
Confidence 5
No 170
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=343.66 Aligned_cols=213 Identities=29% Similarity=0.458 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|+++|+++.+. .+ +|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46789998882 23 899999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+|++||+.+..... ..+..+..+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998865332 1234445567888999999987777754 5699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.+++|++++|++|++++.|+.++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999764 89999999996 568889999999999999999987654
No 171
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=329.36 Aligned_cols=218 Identities=30% Similarity=0.437 Sum_probs=187.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 126 (706)
|+.+||||++ ..|.+|++||++++|||++||+||||||||||||+|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHH
Confidence 6789999998 5688999999999999999999999999999999999999986 89999999875321
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.-+..||+..+-...||+|.+.++..-... .-...+..+.+++.|...++.+.+.+.+ ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHH
Confidence 24568999998876666999999998532211 1112345567889999999988877644 46999999999999
Q ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 207 LEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 207 ~aL~~------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|.|++ ++++||||||||.||...+..++++.++++++|..|+++.||. +....+||||++|++||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99976 4569999999999999999999999999999999999999996 5678999999999999999999999
Q ss_pred hHHH
Q 005252 281 AAFE 284 (706)
Q Consensus 281 ~~~~ 284 (706)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
No 172
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.7e-41 Score=389.06 Aligned_cols=241 Identities=22% Similarity=0.281 Sum_probs=198.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.++++||.++++.+++... . . +.+ .....++++|+++.|+ +++++|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~--~---------~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N--D---------DRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C--C---------ccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 578899999999976544211 0 0 000 0112589999999984 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|++ |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999986 8999999987532 24679999999999998 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
.+. +++.++++..|+ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335566666664 3567898987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+.+.|+++.+ ++|+|+++|++. ....||+|++|++|+++..|+.++..
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999865 699999999973 46789999999999999999998765
No 173
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-42 Score=370.91 Aligned_cols=245 Identities=28% Similarity=0.382 Sum_probs=203.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+..+|++|+-++.+++|+..- . .. ....... .++++|+|++|+ ++..++|+|+|+++++
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~--------------~-~~--~~~~~~~-~l~~~~vsF~y~---~~~~~~L~~~~l~l~~ 363 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTF--------------P-DE--QTATTGQ-ALELRNVSFTYP---GQQTKALKNFNLTLAQ 363 (573)
T ss_pred HHHHHHHHHhhhccCCcccCC--------------C-cc--ccCCccc-eeeeccceeecC---CCccchhhccceeecC
Confidence 356789999999998888542 0 00 0111112 799999999995 3455799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||++.|+|-++|+ +|+|++||.+.... ++.+++++|..++|.+ |+|+||..+..
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-- 437 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-- 437 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC--
Confidence 9999999999999999999999999986 99999999875321 3478999999999988 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ .+. +.+.++++++||+ +..||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+
T Consensus 438 --~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 438 --D-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred --C-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 1 222 4466677777775 356778887 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+.++++.|.+-++ |+|+|++||+... .+.||+|++|++|++++.|..++...
T Consensus 510 E~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 510 ERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999999988765 8999999999753 68899999999999999999887664
No 174
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=382.04 Aligned_cols=220 Identities=23% Similarity=0.324 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++++ +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|++...
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999998762 138999999987531
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++||+|++.+++.+||+||+.+....+.....+.++..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 12469999999999999999999998754321111233445567899999999987777755 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999988899999999996 578889999999999999999998764
No 175
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=364.54 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|++ ||++++. ++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~~-----~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLG-----DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeC-----CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 556 8888882 233 3 899999999999999999999999999999999886 8999999986421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++||+|+..+++.+||+||+.++.. ...+++++++++.+||.+..++.+ +.||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHH
Confidence 13579999999999999999999988632 112356889999999988777754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++ +++.+++|++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 67899999999999999999999887
Q ss_pred HH
Q 005252 282 AF 283 (706)
Q Consensus 282 ~~ 283 (706)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 64
No 176
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=346.11 Aligned_cols=219 Identities=24% Similarity=0.351 Sum_probs=183.5
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 125 (706)
..++++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 358899999988 3467999999999999999999999999999999999998641 1248999999987521
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 196 (706)
.++.++|++|++.+++ +|++||+.+...... .....+..++++++++.++|.+ ..++ .+..||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 149 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKLS 149 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCC
Confidence 1356999999998887 799999998754321 1123344567788999998853 2333 456799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 578899999999999999999
Q ss_pred cCchhHH
Q 005252 277 GETSAAF 283 (706)
Q Consensus 277 G~~~~~~ 283 (706)
|++++..
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 9987653
No 177
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=346.46 Aligned_cols=221 Identities=23% Similarity=0.350 Sum_probs=180.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~---- 125 (706)
-+++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+.. +....+|+|.++|++...
T Consensus 6 ~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 4688999888 34679999999999999999999999999999999999976 211248999999986421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
.++.++|++|++.+++. ||+||+.+....+ ......++.++.+.++++.+||.+...+.+. ..+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHH
Confidence 13569999999988886 9999998874332 1111233445667889999999653222221 2456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
++||++|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++ .++.+++|++++|++|++++.|++++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999996 489999999996 578889999999999999999987654
No 178
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=345.84 Aligned_cols=222 Identities=22% Similarity=0.343 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.+||.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 48899999988 3467999999999999999999999999999999999998741 1248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
..+.++|++|++.+++ .||+||+.+..... .....+..++.+++.++.+++.+..+... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH--GVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHH
Confidence 1356999999998887 79999999875432 11123344566788899999864221111 2245689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999975 78999999996 56889999999999999999998876
Q ss_pred HH
Q 005252 282 AF 283 (706)
Q Consensus 282 ~~ 283 (706)
..
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
No 179
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=345.08 Aligned_cols=221 Identities=25% Similarity=0.408 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 125 (706)
.|+++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999983 35799999999999999999999999999999999998753 11248999999987531
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++ +|++||+.+..... ...+.++.++.++++++.+++.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTH--GIKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346899999998887 79999999875432 11123345567888888888753211111 1245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 79999999996 57889999999999999999998765
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 4
No 180
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.8e-41 Score=350.42 Aligned_cols=221 Identities=21% Similarity=0.330 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEEccC----CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 005252 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~- 125 (706)
.|+++||+++|..+. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 489999999984211 01356999999999999999999999999999999999999885 8999999987531
Q ss_pred ----CcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
..+.++|++|++. +++.+||.|++.+...... ....++..+.++++++.+||. +..++. +..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 1246999999974 6778899999988654431 123444556788999999994 555553 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874 89999999996 5788899999999999999998
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 233 ~~~~~ 237 (267)
T PRK15112 233 STADV 237 (267)
T ss_pred CHHHH
Confidence 87654
No 181
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.6e-41 Score=398.05 Aligned_cols=247 Identities=27% Similarity=0.404 Sum_probs=199.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+. +..+ .. .......++++|++++|+. ..+++|+|+|++++|
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~----~~~~---------~~---~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE----GTRF---------LH---RPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------CC---CCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 578999999999987765321 0000 00 0011235999999999942 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999986 8999999987532 24679999999999987 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++ +.+.++..+ +.+..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHHH----HHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 122332 334444443 34567999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 637 e~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 637 EERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999864 799999999974 468899999999999999999887654
No 182
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.3e-41 Score=364.26 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=180.2
Q ss_pred eEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------C
Q 005252 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (706)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 126 (706)
||++.+ +++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 4 ~l~~~~-----~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRL-----GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEE-----CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 778777 2333 4 999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ +.|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 12344567899999999988777754 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..++|++++|++|+++..|++++..
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 5788999999999999999999987654
No 183
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.7e-41 Score=400.18 Aligned_cols=251 Identities=25% Similarity=0.309 Sum_probs=197.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|.+|+.++++.+++.+. . ..+..+. . ..+ .......++++|++++|+. ..+++|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~---~~~~~~~--~-~~~---~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-E---EEEAPAA--G-SEP---SPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-c---ccccccc--c-ccc---CCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 578899999999987665331 0 0000000 0 000 0011235999999999942 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--- 577 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--- 577 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC---
Confidence 9999999999999999999999999986 8999999997532 24679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+.+ .+.+.++..++ .+..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 578 -~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 578 -P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred -C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1 12232 23444444443 4467899987 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|++ .++|+|+++|+++ ..+.+|+|++|++|++++.|+.++..+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4799999999974 457799999999999999999887764
No 184
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-41 Score=400.19 Aligned_cols=245 Identities=30% Similarity=0.407 Sum_probs=196.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+||.++++.+|..+.-. . ..+ ......++++|++++|+.. +++++|+|+|++++|
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~--~-----------~~~----~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG--T-----------LAP----LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC--C-----------CCC----CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57899999999998776643200 0 000 0112359999999998521 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+|+|+|.++|. +|+|.+||++.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999998532 23679999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1222 334455555554 3457899986 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+.++..+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 236899999999974 467899999999999999999887654
No 185
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.7e-41 Score=344.07 Aligned_cols=199 Identities=33% Similarity=0.481 Sum_probs=171.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (706)
|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999999875 899999998754222235899999999999999999988
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
......+ ....++.++++.++++.+||.+..++.+ .+||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 2234455567889999999987777754 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 232 ~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
.+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|+..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999764 89999999996 5788999999999999999888654
No 186
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=344.08 Aligned_cols=220 Identities=26% Similarity=0.369 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 125 (706)
+.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 468999999998 34679999999999999999999999999999999999987631 137999999987531
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 196 (706)
.++.++|++|++.+++.+|+.||+.+..... .....++..+.+++.++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 1346999999999999999999998765432 11123334556777777777642 3344 456799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999996 578889999999999999999
Q ss_pred cCchhHH
Q 005252 277 GETSAAF 283 (706)
Q Consensus 277 G~~~~~~ 283 (706)
|++++..
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9887653
No 187
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.8e-41 Score=344.51 Aligned_cols=199 Identities=29% Similarity=0.428 Sum_probs=172.0
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----CcCcEEEEe-cCCCCCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIG 141 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~-Q~~~l~~ 141 (706)
+.+++|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++... ..+.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3467999999999999999999999999999999999999885 8999999986321 234689998 5567888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005252 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (706)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP 221 (706)
.+||+||+.+..... ....++..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999998875442 1234445567888999999988888765 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|.+|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999764 89999999997 5778999999999999998765
No 188
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=335.92 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----C
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 126 (706)
.++|+|+++.|..+. +++.+|+|+|+++++||+++|+||||||||||+++|+|++++....+|+|.++|++... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999996542 45689999999999999999999999999999999999988322249999999987432 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++|++|++.+++.+||+||+.+.+... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998763210 223 3457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
++|+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+.+|++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 6787877776556788999999999999998765
No 189
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-41 Score=400.12 Aligned_cols=246 Identities=24% Similarity=0.296 Sum_probs=197.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+|+.++++.+++.+.- ..+ .. .......++++|++++|. .++++|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~----~~~---------~~---~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINK----KKR---------TE---LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCccccc----ccc---------cC---CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 5788999999999876654320 000 00 001122599999999984 246799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+++|+|+++|. +|+|++||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-- 573 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-- 573 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999987431 24679999999999988 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+.++ +.+.++..+ +.+..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 574 -~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 574 -E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred -C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1 122322 333444333 34567999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|+.++..+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999974 468899999999999999999887654
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=380.00 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=189.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++++ +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 8999999987531
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++||+|++.+++.+||+||+.++...... ...+.++.+++++++++.+||.+..++.++ .|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHH
Confidence 124699999999999999999999986432210 112234445678899999999887777554 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999988899999999996 578899999999999999999988754
No 191
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-41 Score=320.18 Aligned_cols=211 Identities=31% Similarity=0.410 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
-|+.+++++++.... +...||++|++.+++||.+||+|||||||||||-+|+|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 477888888875432 3467999999999999999999999999999999999999886 999999998732
Q ss_pred ---cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.+.+.+|+|+|...|+|+||..||+...+.++-. +..+.+....++|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 2346899999999999999999999998877631 344555678899999999877666 56789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
||+||||++..|+|||.||||.+||..+..+|.++|-.+.+ .|.|.|++||||. +...|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999976 5999999999974 678999999999999874
No 192
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=347.67 Aligned_cols=220 Identities=25% Similarity=0.336 Sum_probs=181.1
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~ 125 (706)
....++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 18 ~~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 18 KEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CCceEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 33469999999988 34679999999999999999999999999999999999864 211248999999987521
Q ss_pred -------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCC
Q 005252 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRG 194 (706)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~ 194 (706)
..+.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+ ..++ .+..
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~ 164 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALS 164 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----Cccc
Confidence 13469999999988886 99999988643221 1112233456778888888852 2333 4567
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|+++
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 68999999996 5788999999999999999
Q ss_pred EEcCchhH
Q 005252 275 YFGETSAA 282 (706)
Q Consensus 275 ~~G~~~~~ 282 (706)
+.|++++.
T Consensus 243 ~~~~~~~~ 250 (268)
T PRK14248 243 EYDQTEQI 250 (268)
T ss_pred EeCCHHHH
Confidence 99987654
No 193
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.3e-40 Score=345.76 Aligned_cols=216 Identities=27% Similarity=0.353 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 125 (706)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 489999999883 357999999999999999999999999999999999999885 8999999986 321
Q ss_pred ---------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 005252 126 ---------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (706)
Q Consensus 126 ---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 193 (706)
..+.++|++|++ .+++.+|+.||+.+..... . .....+.++.+.++++.+++.+ ..++. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL-----PT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC-----Cc
Confidence 123589999997 3677889999997653211 1 1122344567889999999963 45553 45
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|++++++ |.|||++||++ ..+.+.+|++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999764 89999999996 57778999999999999
Q ss_pred EEEEcCchhH
Q 005252 273 TVYFGETSAA 282 (706)
Q Consensus 273 iv~~G~~~~~ 282 (706)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999987754
No 194
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=349.00 Aligned_cols=222 Identities=26% Similarity=0.397 Sum_probs=181.1
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~- 125 (706)
...|+++||++.+ +.+.+|+|+||++++||+++|+|||||||||||++|+|++++. .+.+|+|.++|++...
T Consensus 11 ~~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 11 NIIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3469999999998 3467999999999999999999999999999999999997631 0248999999987421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.+++. ||+||+.+.+..+ ... .+.++++.++++.+++....+... +..+..|||||
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~ 159 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQ 159 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHH
Confidence 12469999999988885 9999999876432 111 223456778888888743211111 22456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC---------
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG--------- 270 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~--------- 270 (706)
|||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999999964 79999999996 578899999999996
Q ss_pred --CeEEEEcCchhHH
Q 005252 271 --GKTVYFGETSAAF 283 (706)
Q Consensus 271 --G~iv~~G~~~~~~ 283 (706)
|++++.|+++++.
T Consensus 238 ~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 238 KVGYLVEFNETKKIF 252 (269)
T ss_pred ccceEEEeCCHHHHH
Confidence 6789999887664
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=349.12 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecCc-
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~I~~~G~~~~~- 125 (706)
|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999988 34679999999999999999999999999999999999987630 127999999987431
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++|++|++.+++.+||+||+.+...... ......++..++++++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 12458999999876666899999988532110 00111123446688999999998766664 457999999
Q ss_pred HHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 201 qRv~Ia~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
|||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999875 89999999996 578889999999999
Q ss_pred CeEEEEcCchhH
Q 005252 271 GKTVYFGETSAA 282 (706)
Q Consensus 271 G~iv~~G~~~~~ 282 (706)
|++++.|++++.
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999987765
No 196
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=343.62 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 47899999988 3467999999999999999999999999999999999998752 1248999999986421
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
.++.++|++|++.+++ .||.||+.+..... ....++..++++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1346999999999887 79999998875332 11123344566788888888754221111 12456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|+++..|++++.
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 578899999999999999999987654
No 197
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=342.17 Aligned_cols=222 Identities=25% Similarity=0.339 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 125 (706)
..++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 358999999998 34679999999999999999999999999999999999865 321248999999986421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++|++|++.+++ .||+||+.+....+. ....+..++.+.+.++.+++........ +..+..||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHH
Confidence 1356999999998888 699999998754321 1112223455677888887742211111 224567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++|++|+++..|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 58999999996 5788999999999999999999877
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 233 ~~ 234 (252)
T PRK14255 233 QM 234 (252)
T ss_pred HH
Confidence 54
No 198
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=379.82 Aligned_cols=218 Identities=23% Similarity=0.365 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc--CCC--CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLR--LPD--KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~--~~~--~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++||+|++.+++.+||+||+.++.... ... ..+.++.+++++++++.+||.+..++.+ .+||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 1246999999999999999999998754211 000 0123445567899999999988777755 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999996 5788899999999999999999987
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 64
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=343.03 Aligned_cols=221 Identities=26% Similarity=0.335 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+..+.. ..+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999988 34679999999999999999999999999999999999875321 248999999987431
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+.. +..+..|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13468999999988885 99999998755431 1123344567788888888853211111 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+.+|++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 56788999999999999999998875
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 235 ~ 235 (253)
T PRK14261 235 I 235 (253)
T ss_pred H
Confidence 4
No 200
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-40 Score=336.45 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=172.5
Q ss_pred eEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---------C
Q 005252 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (706)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 126 (706)
||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 5 ~l~~~~-----~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRL-----PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEec-----CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 888888 33444 99999999 999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++|++|++.+++.+|++||+.+..... ..+..++++.++++.+|+.+..++. +..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 246999999999999999999998865321 2233456788999999998766664 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|+++..|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999996 5678899999999999998765
No 201
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=346.48 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 125 (706)
..|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 368999999999 3467999999999999999999999999999999999998751 1248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++ .||+||+.+..... ...+.++.++.+.+.++.++|.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999998864322 112344455567888999999753322221 245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 48999999996 57889999999999999999999876
Q ss_pred HH
Q 005252 282 AF 283 (706)
Q Consensus 282 ~~ 283 (706)
..
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 53
No 202
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-40 Score=347.27 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 5899999999841 12245999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEecCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566779999998865421 223445556789999999998777764 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++. .+|++++|++|+++..|++++..
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 999999999974 554 69999999999999999987654
No 203
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-40 Score=382.53 Aligned_cols=246 Identities=28% Similarity=0.417 Sum_probs=196.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+|+.++++.+++.+. + ...+ .....++++|++++|+. +++++|+|+|+++++
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~----~----------~~~~-----~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP----A----------MPLP-----EPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC----C----------CCCC-----CCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 578999999999976554221 0 0000 01225999999999842 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+||||||||||+++|+|.++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999886 8999999987532 23579999999999987 99999985421
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
..+.++..+ ..++.++.+ .+..||.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 122322211 223444433 3456888876 46779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
.+.+.|+++..+|+|+|+++|+++ ..+.||++++|++|++++.|+.++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998767899999999974 46789999999999999999987654
No 204
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=341.86 Aligned_cols=221 Identities=24% Similarity=0.348 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 48899999988 34569999999999999999999999999999999999988741 236999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||+||+.+....+. ....++..+.+++.++.++|.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998875 99999998754321 1112233456777888888753222211 2255689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||++ +++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999995 589999999996 57889999999999999999998776
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 233 ~ 233 (251)
T PRK14249 233 I 233 (251)
T ss_pred H
Confidence 4
No 205
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=343.71 Aligned_cols=217 Identities=26% Similarity=0.399 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+|+|+|++++... .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 58999999988 345799999999999999999999999999999999999875311 38999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (706)
..+.++|++|++.+++ +||+||+.+....+. ..++.+..+++.++++.+++.+ ..++ .+..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~ 153 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSG 153 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCH
Confidence 1246999999999887 799999988754321 1233344567788899998842 3333 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe-----CCe
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGK 272 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~-----~G~ 272 (706)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|+ +|+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999999999975 69999999997 57889999999998 599
Q ss_pred EEEEcCchhH
Q 005252 273 TVYFGETSAA 282 (706)
Q Consensus 273 iv~~G~~~~~ 282 (706)
+++.|++++.
T Consensus 232 i~~~~~~~~~ 241 (259)
T PRK14260 232 MVEFGVTTQI 241 (259)
T ss_pred EEEeCCHHHH
Confidence 9999998865
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=345.74 Aligned_cols=221 Identities=26% Similarity=0.352 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFY-----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEE-----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 59999999998 3457999999999999999999999999999999999998641 1248999999987431
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++. ||+||+.+..... ....+++.++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999988886 9999998875432 11122334466888899889864211111 1245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++++|++|+++..|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999999996 57888999999999999999998765
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 4
No 207
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=341.22 Aligned_cols=217 Identities=26% Similarity=0.354 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|.++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 48899999998 34679999999999999999999999999999999999986 211248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCh
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSG 197 (706)
.++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.+++.. ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1346999999998886 69999998865432 11122333456788899999853 2333 4567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+++|++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 69999999996 5788899999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
+.++.
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 87754
No 208
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=343.02 Aligned_cols=223 Identities=26% Similarity=0.398 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|+|||||||||++|+|+.+++. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 58999999998 33569999999999999999999999999999999999987631 237999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++.+++ +|++||+.+..... ...+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999998888 79999998865332 11123344567888999999854322222 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC-----CeEEE
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~-----G~iv~ 275 (706)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +|+|||++||++ .++.++||++++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 678899999999999 99999
Q ss_pred EcCchhHH
Q 005252 276 FGETSAAF 283 (706)
Q Consensus 276 ~G~~~~~~ 283 (706)
.|++++..
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99988763
No 209
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-41 Score=395.28 Aligned_cols=251 Identities=29% Similarity=0.393 Sum_probs=208.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
.|+.||.+|+++++.+|..+..-. .+.. .....-.++++||++.|+. .++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~-----------~~~~----~~~~~G~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDST-----------SGGK----LPNVKGDIEFRNVSFAYPT--RPDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCC-----------CCCc----cccceeEEEEeeeEeeCCC--CCCchhhcCCcEEecC
Confidence 578999999999999996542110 0000 1123346999999999974 3568899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
|+.+||+|||||||||.+-+|-+.++|. +|.|.+||.+++. -++++|.|.|+|.||.. |+||||.|+.
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~--- 1088 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS--- 1088 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC---
Confidence 9999999999999999999999999986 8999999998542 24789999999999988 9999999992
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
.. .+.+|..+. +.+.+ .+|.+..||.+|+ ...+||||||||++|||||++||+||||||.||+||+++.+
T Consensus 1089 -~~-vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1089 -EE-VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred -CC-CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 11 344443332 22333 4788999999998 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.|-+.|.+.. .|+|.|++.|+++ ..+.+|.|+++++|++++.|+-+++..
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999975 5899999999976 368899999999999999999887765
No 210
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-41 Score=365.81 Aligned_cols=215 Identities=30% Similarity=0.408 Sum_probs=183.0
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
-.++|+|+++.|. ++++||+++||+|++||-+||+|+|||||||++|+|.+..+ + +|+|++||++++.
T Consensus 350 ~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLE 421 (591)
T ss_pred CcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChH
Confidence 3499999999993 45669999999999999999999999999999999999987 3 8999999998532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
-++.+||||||..||.+ ||.+|+.|+..- .+.++..+ ...+++. .+++..+|.+|++ ..-|||||
T Consensus 422 SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGer-G~~LSGGe 492 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGER-GLMLSGGE 492 (591)
T ss_pred HhhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHHHHHHHHHHcCcHHHHH--hccccchhhHhhc-ccccccch
Confidence 24679999999999988 999999998432 23333222 2333332 3567889999984 45699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||||+||||+++||+|+++|||||.||+++..++++.+.+. ..|+|+|++.|+. ...+.||+|++|++|++...|+.
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccH
Confidence 99999999999999999999999999999999999999883 4689999999995 46889999999999999999999
Q ss_pred hhHHH
Q 005252 280 SAAFE 284 (706)
Q Consensus 280 ~~~~~ 284 (706)
+++..
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 88775
No 211
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3e-40 Score=376.83 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=186.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999998 3467999999999999999999999999999999999999886 8999999987432
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+ ..|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 123589999999999999999999885321 1234467889999999987777755 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999999988899999999996 578899999999999999999988764
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-40 Score=344.45 Aligned_cols=222 Identities=20% Similarity=0.331 Sum_probs=179.9
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 125 (706)
..|+++|+++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +....+|+|.+||++...
T Consensus 23 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWY-----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 369999999988 34569999999999999999999999999999999999986 211248999999987421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
..+.++|++|++.+++. ||+||+.++.... ...+++..++.+.+.++.+++.+...... +..+..||||||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHH
Confidence 13569999999988875 9999999875432 11122233455677777776532111111 124567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||++||++|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999976 79999999996 5788899999999999999999876
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 252 ~~ 253 (271)
T PRK14238 252 KI 253 (271)
T ss_pred HH
Confidence 54
No 213
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-40 Score=384.04 Aligned_cols=245 Identities=29% Similarity=0.431 Sum_probs=195.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++..+.+|+.++++.++..+... + ..+ .......++++|+++.++ +.+.+|+|+|++++|
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~--~-----------~~~---~~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP--G-----------AID---LGRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC--C-----------CCC---cCCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 46778888999887655432100 0 000 001112599999999994 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++.
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--- 433 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--- 433 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999986 8999999987532 23679999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+.++ +.+.++..+ +++..||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+
T Consensus 434 -~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 434 -P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred -C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1 122322 333444444 34567888886 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..
T Consensus 507 ~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999875 4799999999974 56889999999999999999977654
No 214
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.3e-40 Score=333.77 Aligned_cols=197 Identities=33% Similarity=0.446 Sum_probs=169.8
Q ss_pred EEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c-----
Q 005252 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (706)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~----- 125 (706)
++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++.. .
T Consensus 1 i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKF-----GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEE-----CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 36888887 3467999999999999999999999999999999999999885 899999998732 1
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+..... .....+..++++++++.+||.+..++.+ .+||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1246999999999999999999999875432 2234455667889999999987777754 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
||++|+.+|++|||||||+|||+.+...+.+.|++++++|.|+|++||++. ..+.+|++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999999999999999999877999999999974 35789999875
No 215
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.2e-39 Score=338.92 Aligned_cols=219 Identities=24% Similarity=0.323 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~--- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++| .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCCh
Confidence 59999999988 345799999999999999999999999999999999997 345 48999999987421
Q ss_pred --CcC-cEEEEecCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 --~~~-~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
..+ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 378999999999999999999875432110 0111223346678899999996 34555432 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~ 276 (706)
||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 456565 899999999999999
Q ss_pred cCchhH
Q 005252 277 GETSAA 282 (706)
Q Consensus 277 G~~~~~ 282 (706)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 988744
No 216
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-40 Score=342.57 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=169.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468999998731 2356999999999999999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (706)
++.++|++|++.+++ .||+||+.+.... ....... ....+.++.+ +++...+. .+.+|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999998875 5999999874321 1111111 1123344443 33333333 456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||++||++. ++ ..||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999974 899999999974 55 56999999999999999988
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
++..
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7654
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=346.02 Aligned_cols=219 Identities=23% Similarity=0.348 Sum_probs=181.2
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~- 125 (706)
...|+++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |....+|+|.+||++...
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999882 3569999999999999999999999999999999999854 311148999999986421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCC
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGI 195 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~L 195 (706)
.++.++|++|++.+++. ||+||+.+...... ..+....++++.++++.+|+. +..++ .+..|
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~L 183 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALGL 183 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----ChhhC
Confidence 13469999999988875 99999998754321 112233446678888888874 23343 45679
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|++ .++.+++|++++|++|+++.
T Consensus 184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 58999999996 57788999999999999999
Q ss_pred EcCchhH
Q 005252 276 FGETSAA 282 (706)
Q Consensus 276 ~G~~~~~ 282 (706)
.|++++.
T Consensus 262 ~g~~~~~ 268 (286)
T PRK14275 262 HAPTAQL 268 (286)
T ss_pred eCCHHHH
Confidence 9987764
No 218
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=344.50 Aligned_cols=225 Identities=24% Similarity=0.286 Sum_probs=182.2
Q ss_pred CCceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEec
Q 005252 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKT 123 (706)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~ 123 (706)
++....|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++.
T Consensus 15 ~~~~~~l~~~nl~~~~-----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 15 NPDHSVFEVEGVKVFY-----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CCCCceEEEeeEEEEe-----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 3445589999999998 3457999999999999999999999999999999999997632 12489999999864
Q ss_pred Cc-------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005252 124 KL-------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (706)
Q Consensus 124 ~~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (706)
.. .++.++|++|++.+++. ||.||+.+....+. .. .+.++.+++.++.+++........ +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS 163 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALS 163 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCC
Confidence 21 13569999999988875 99999988654321 11 122345667788888742211111 12456799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe-------
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------- 269 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~------- 269 (706)
|||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++++ +.|||+++|++ +++.+++|++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999975 68999999997 57889999999997
Q ss_pred --CCeEEEEcCchhHH
Q 005252 270 --GGKTVYFGETSAAF 283 (706)
Q Consensus 270 --~G~iv~~G~~~~~~ 283 (706)
+|++++.|++++..
T Consensus 242 ~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 242 KRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccCceEEEeCCHHHHH
Confidence 89999999988663
No 219
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=365.49 Aligned_cols=226 Identities=28% Similarity=0.359 Sum_probs=193.8
Q ss_pred eeEEEEEeEEEEEEccC------CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005252 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 122 (706)
...++++||++.|..++ .+...+++||||++.+||++||+|+||||||||.++|+|+.+|. +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 34689999999997532 23467899999999999999999999999999999999999985 8999999976
Q ss_pred cC-------cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005252 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (706)
Q Consensus 123 ~~-------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (706)
.. ..++.+-+|+||+ .|.|.+||++++.......... ..++.++++.++++.+||... +.+.+++
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1124577888886 6889999999999886654332 256777889999999999742 2344788
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||. ..+..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 99999999999999999999999999999999999999999999999874 99999999995 67889999999999999
Q ss_pred EEEEcCchhHHH
Q 005252 273 TVYFGETSAAFE 284 (706)
Q Consensus 273 iv~~G~~~~~~~ 284 (706)
+|+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998876543
No 220
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1e-39 Score=340.18 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEecCc---C
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~---~ 126 (706)
.|+++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999987 1469999999999999999999999999999999999988721 138999999987532 1
Q ss_pred cCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCChHHHH
Q 005252 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 127 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSGGerq 201 (706)
.+.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 456679999987654322 1112 2356888999999975 2344 44579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.+++|++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999764 89999999996 5678899999999999999999887
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 227 ~~ 228 (254)
T PRK10418 227 TL 228 (254)
T ss_pred HH
Confidence 65
No 221
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-40 Score=351.91 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=186.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~--- 124 (706)
..|+++|+++.+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|...+. .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999842 2356999999999999999999999999999999999997531 124899999999853
Q ss_pred ----cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 125 ----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
..++.++||+|++.+++ .|++||+.|+.... ..+ ++...+.+.+.++.++|.+..++.++. .+..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12357999999999886 69999999875321 122 222345578888998886544555543 567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++ ..+.+.||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 69999999996 577888999999999999999999
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8764
No 222
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.1e-40 Score=334.55 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=179.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 6789999987421 11267999999999999999999999999999999999999875 8999999987421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998754321 123455567789999999998777764 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ + +.+++|++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 589999999997 3 5689999999999986
No 223
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-39 Score=339.34 Aligned_cols=216 Identities=28% Similarity=0.332 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++ ...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 48999999998 3456899999999999999999999999999999999999885 8999999865 321
Q ss_pred ---------CcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 005252 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (706)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 193 (706)
..+.++|++|++. +.+.+|+.||+.+..... . .....+..+.++++++.+|+.+ ..++. ++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----ch
Confidence 0135899999974 456679999997643211 1 1112234467889999999963 55554 45
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.+++|++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999876 489999999996 57788999999999999
Q ss_pred EEEEcCchhH
Q 005252 273 TVYFGETSAA 282 (706)
Q Consensus 273 iv~~G~~~~~ 282 (706)
+++.|++++.
T Consensus 227 i~~~~~~~~~ 236 (253)
T TIGR02323 227 VVESGLTDQV 236 (253)
T ss_pred EEEECCHHHH
Confidence 9999987654
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=340.26 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=183.8
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~- 125 (706)
+..+.++++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 6 PIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 4568899999888 45679999999999999999999999999999999999987511 148999999987421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
.++.++|++|++.++ .+|++||+.++..... . ..+..+.++++++.++|.+..+...+ ..++.|||||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 154 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQ 154 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHH
Confidence 134689999999887 5899999998765321 1 22334678889999998653322222 2556899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe--------CC
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------GG 271 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~--------~G 271 (706)
|||++|||||+++|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.+++|++++|+ +|
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCc
Confidence 9999999999999999999999999999999999999999964 79999999996 57889999999996 89
Q ss_pred eEEEEcCchhH
Q 005252 272 KTVYFGETSAA 282 (706)
Q Consensus 272 ~iv~~G~~~~~ 282 (706)
++++.|+.++.
T Consensus 233 ~i~~~g~~~~~ 243 (261)
T PRK14263 233 YLVEMGPTAQI 243 (261)
T ss_pred eEEEeCCHHHH
Confidence 99999987754
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.3e-40 Score=327.06 Aligned_cols=188 Identities=56% Similarity=0.868 Sum_probs=164.1
Q ss_pred eEEEEEeEEEEEEccC-CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc-
Q 005252 50 ARLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~- 125 (706)
..++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|. +|+|.+||++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchH
Confidence 3588999999984210 01367999999999999999999999999999999999998 775 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+..... .||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~ 121 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVS 121 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHH
Confidence 2356999999999999999999997643110 49999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998779999999999855678899999999999998764
No 226
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.8e-40 Score=336.53 Aligned_cols=204 Identities=28% Similarity=0.326 Sum_probs=171.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecCc---CcCcEEEEecCCC--CCCCCC
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~--l~~~lT 144 (706)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. ...+|+|.++|++... ..+.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 0128999999987532 1246999999984 557789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005252 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (706)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP 221 (706)
+.|++.+...... ....+.++++.++++.++|.+ ..++ .+..|||||||||+||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653321 112344567899999999973 3444 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+|||..+...+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 89999999996 5788899999999999999999876553
No 227
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.1e-40 Score=372.69 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++||++.| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 6889999998 3467999999999999999999999999999999999998762 138999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCChHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSGGerqRv 203 (706)
.++.++||+|++.+++.+||+||+.+........ ....++..++++++++.+||.+.. ++. +..|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998865432111 122344556788999999997654 343 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
+||++|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999988899999999996 57889999999999999999988764
No 228
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.6e-39 Score=341.50 Aligned_cols=222 Identities=25% Similarity=0.291 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEEcc----CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-
Q 005252 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~- 125 (706)
.|+++||++.+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 47899999988410 001367999999999999999999999999999999999998875 9999999986421
Q ss_pred -------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 005252 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 195 (706)
..+.++|++|++ .+++..|+.|++.+...... ....++..++++++++.+|+. +..++. ++.|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccC
Confidence 135699999997 46677899999976543111 123445556789999999996 455654 4579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
|||||||++||++|+.+|++|||||||+|||..++..+.+.|++++++ |.|+|++||++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999864 89999999996 5788899999999999999
Q ss_pred EEcCchhHH
Q 005252 275 YFGETSAAF 283 (706)
Q Consensus 275 ~~G~~~~~~ 283 (706)
+.|++++..
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887643
No 229
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.5e-40 Score=381.45 Aligned_cols=245 Identities=30% Similarity=0.422 Sum_probs=198.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+. +..+ .+ ...-.++++|++++++. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~----~~~~---------~~-----~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDT----GTRA---------IE-----RARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCC----CCCC---------CC-----CCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 578899999999986665331 0000 00 01125999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+.+. .++.++||+|++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999987431 23579999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
...+. ++++++++..|+ ++..||.+|+. .+.||||||||++|||+++++|++++||||||+||..+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 335555555554 45678999874 56799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+++.|++++ +++|+|++||++ ...+.||+|++|++|+++..|+.++..
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 469999999997 357889999999999999999988754
No 230
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-40 Score=414.96 Aligned_cols=257 Identities=23% Similarity=0.313 Sum_probs=200.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|++|++|+.++++.+|..+.-. .+.. ... ........|+|+||+++|+.. ++++||+|+|++++|
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~-~~~~---------~~~--~~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRD-NGGI---------RIK--NKNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCC-Cccc---------ccc--cCCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 68899999999998776532100 0000 000 000112359999999999531 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC---------------------------------------------------C
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~---------------------------------------------------~ 110 (706)
|+.+||+||||||||||+++|.|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-----HHHHHHHcCCC
Q 005252 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL-----VERTIIEMGLQ 180 (706)
Q Consensus 111 ~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~ 180 (706)
+.+|+|++||.++.. .++.++||+|++.||+. |++|||.|+.. ..+.++..+. +++.++ .|.
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~--~LP 1345 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATREDVKRACKFAAIDEFIE--SLP 1345 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHH--hCc
Confidence 148999999998532 24679999999999976 99999999732 1233332221 222332 456
Q ss_pred ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHH
Q 005252 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVF 259 (706)
Q Consensus 181 ~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~ 259 (706)
+..||.||+ ....||||||||++|||||+++|+|||||||||+||+.++..|.+.|.++. .+++|+|+++|+++ ..
T Consensus 1346 ~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti 1422 (1466)
T PTZ00265 1346 NKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SI 1422 (1466)
T ss_pred cccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HH
Confidence 788999996 556799999999999999999999999999999999999999999999986 36899999999974 46
Q ss_pred hhCCeEEEEeC----CeEE-EEcCchhHH
Q 005252 260 ELFDRLYLLSG----GKTV-YFGETSAAF 283 (706)
Q Consensus 260 ~~~D~vilL~~----G~iv-~~G~~~~~~ 283 (706)
+.||+|++|++ |+++ +.|+.+++.
T Consensus 1423 ~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1423 KRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 78999999999 9955 899988765
No 231
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-40 Score=388.83 Aligned_cols=246 Identities=27% Similarity=0.439 Sum_probs=197.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+. .+ ... .. .....++++|++++|.. ..+.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~---~~-----------~~~--~~-~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRS---AG-----------LAA--LP-ELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccC---CC-----------CCC--CC-CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578999999999987665321 00 000 00 11235999999999842 335699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+|+|+|+++|+ +|+|++||.+.+. .++.++||+|++.+|+. |++||+.++.
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~--- 555 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN--- 555 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC---
Confidence 9999999999999999999999999886 8999999997532 24579999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+.++ +.+.++..+ +.+..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 556 -~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 556 -P-GAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred -C-CCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 1 122322 333333333 34567899987 457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++. +|+|+|++||+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999985 5799999999974 356799999999999999999877653
No 232
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=372.25 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=183.7
Q ss_pred EeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC------cC
Q 005252 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS------FG 128 (706)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~------~~ 128 (706)
+||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.... .+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 6788888 3467999999999999999999999999999999999999885 89999999875321 24
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|++.+++.+||+||+.++.........+.++..++++++++.+|+.+..++.+ .+|||||||||+||++
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987642111101123444567889999999987777754 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|++++.
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999988899999999996 578899999999999999999987654
No 233
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=336.63 Aligned_cols=221 Identities=22% Similarity=0.318 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 125 (706)
.++++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.. |....+|+|.+||++...
T Consensus 3 ~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 58899999988 34679999999999999999999999999999999999864 211248999999987421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
..+.++|++|++.+++. |++||+.+..... .....+..++++.+.++.+||.+...... +..+..|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 153 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHH
Confidence 13569999999988886 9999998864322 11123345577888999999854322222 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||++||++ .++.+.+|++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 79999999996 57889999999999999999998876
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 232 ~ 232 (250)
T PRK14266 232 I 232 (250)
T ss_pred H
Confidence 5
No 234
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=343.35 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecCc--
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 125 (706)
..|+++||++.+ +.+.+|+|+||++++||+++|+|||||||||||++|+|++++.. ..+|+|.++|++...
T Consensus 38 ~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 358999999998 34679999999999999999999999999999999999986310 248999999987421
Q ss_pred -----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 005252 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (706)
Q Consensus 126 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 196 (706)
.++.++|++|++.+++. ||+||+.+...... .+. +..++++++++.+||.+ ..++ .+..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 99999998754321 122 34467889999999853 2333 456799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE-EEeCCeEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi-lL~~G~iv~ 275 (706)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++ .++.+++|+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999996 57888999975 679999999
Q ss_pred EcCchhH
Q 005252 276 FGETSAA 282 (706)
Q Consensus 276 ~G~~~~~ 282 (706)
.|++++.
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987654
No 235
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=325.91 Aligned_cols=188 Identities=48% Similarity=0.824 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CcCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~ 129 (706)
.|+++|+++.+... ++++.+|+|+|+++++||+++|+|||||||||||++|+|+..+. ..+|+|.++|++... ..+.
T Consensus 3 ~l~~~~l~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 80 (192)
T cd03232 3 VLTWKNLNYTVPVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQRS 80 (192)
T ss_pred EEEEeeeEEEecCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhhc
Confidence 58899999998421 11256999999999999999999999999999999999986311 148999999987532 2356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
++|++|++.+++.+||+||+.+...++ .||||||||++||++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHHHHHHHHH
Confidence 999999999999999999998753110 4999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC-CeEEEEc
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~-G~iv~~G 277 (706)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.+|++++|++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999877999999999975357889999999998 9999875
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=370.22 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 48899999998 3457999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.++.++||+|++.+++.+||+||+.++............+.++++.++++.+||.+..++.+ ..|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHH
Confidence 13569999999999999999999998642111111233445567889999999987666644 579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999988899999999996 578899999999999999876653
No 237
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=342.57 Aligned_cols=218 Identities=27% Similarity=0.388 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--cC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--FG 128 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~ 128 (706)
.|+++|+++.+. +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccc
Confidence 589999999883 2357999999999999999999999999999999999999885 89999999875321 23
Q ss_pred cEEEEecCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 129 TAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 129 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++|++|++.+. ...+++|++.++...... ......+.+++++++++.+||.+..++.++ .||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHH
Confidence 599999997652 234789998754211000 001122334567889999999887777554 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+++++ +|++++.|++++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999987899999999996 5788999999877 8999999987754
No 238
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-40 Score=338.07 Aligned_cols=213 Identities=31% Similarity=0.422 Sum_probs=172.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999998831 1236999999999999999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (706)
.+.++|++|++.+++ .||+||+.+.... ....+.. ..+.+.++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999875321 1111111 1234555555 45444443 456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||++||++ .++. .||++++|++|++++.|++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIE-NADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHh-hCCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999997 4564 4999999999999999987
Q ss_pred hhHHH
Q 005252 280 SAAFE 284 (706)
Q Consensus 280 ~~~~~ 284 (706)
++..+
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
No 239
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=378.03 Aligned_cols=223 Identities=27% Similarity=0.345 Sum_probs=188.9
Q ss_pred eEEEEEeEEEEEEccCC------ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005252 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 123 (706)
..|+++||++.|....+ +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 35999999999842110 1256999999999999999999999999999999999999875 89999999864
Q ss_pred Cc--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 005252 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (706)
Q Consensus 124 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 192 (706)
.. .++.++||+|++ .+++.+||.|++.+..... .....++.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 21 134699999997 5889999999998865432 1112344557889999999996 456664 4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
++|||||||||+|||+|+.+|++|||||||+|||..++..++++|++++++ |.|||++|||+ +.+.++||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999996 5788999999999999
Q ss_pred eEEEEcCchhHH
Q 005252 272 KTVYFGETSAAF 283 (706)
Q Consensus 272 ~iv~~G~~~~~~ 283 (706)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
No 240
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.4e-40 Score=354.76 Aligned_cols=254 Identities=27% Similarity=0.387 Sum_probs=210.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
.|+.|=+|+-+++...|..+.-. +.+ .+...|.++++++.- ++.++++|+|+||.+.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m------------------~LP-~P~g~L~Ve~l~~~P---Pg~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERM------------------PLP-APQGALSVERLTAAP---PGQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCC------------------CCC-CCCceeeEeeeeecC---CCCCCcceecceeEecC
Confidence 36778889999999888865311 011 244579999999832 45668999999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+||||||||||.|+|.|..+|. +|.|++||.+.+.. -+.+||.|||-.||+. ||.|||.-...--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999999885 99999999875321 3679999999999999 9999996322111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 236 (706)
.++.+-++.+.+.|.|++ +.|.+.+||.||+ ....||||||||+++||||..+|.+++||||-|+||......+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 111111223344566766 5688999999997 4568999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHH
Q 005252 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (706)
Q Consensus 237 L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f 286 (706)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++...
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999985 78999999999999999999999988754
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=338.31 Aligned_cols=220 Identities=25% Similarity=0.383 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EecC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G------~~~~ 124 (706)
.++++|+++++ +.+.+|+|+||++++||+++|+||||||||||+++|+|..+|. +|+|.++| ++..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 48999999998 4577999999999999999999999999999999999998875 55555554 4321
Q ss_pred -----cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 125 -----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 125 -----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
..++.++|++|++.+++.+||+||+.+..... ....+++.++++.++++.+++.+...... +..+..|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 158 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQ 158 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHH
Confidence 11356899999999999999999999875432 11223455567889999999964211111 12456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++|||+|+.+|++++|||||+|||..+...+.+.|.++++ +.|||++||++ ..+.++||++++|++|+++..|+.
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999965 69999999996 577899999999999999999988
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
++..
T Consensus 237 ~~~~ 240 (257)
T PRK14246 237 NEIF 240 (257)
T ss_pred HHHH
Confidence 7543
No 242
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=344.18 Aligned_cols=225 Identities=28% Similarity=0.406 Sum_probs=182.0
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~- 125 (706)
...|.++||++.+ +.+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+...
T Consensus 43 ~~~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 43 DAKLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CceEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3468999999998 3467999999999999999999999999999999999998531 1248999999986421
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccC
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIGN 189 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~ 189 (706)
.++.++|++|++.+++. ||+||+.+....... .... .+..++.+.++++.+++.+..+... +
T Consensus 118 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 195 (305)
T PRK14264 118 GVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-D 195 (305)
T ss_pred cccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-c
Confidence 12469999999988875 999999987532100 0011 1233567888999998854332222 2
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeE-EEE
Q 005252 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YLL 268 (706)
Q Consensus 190 ~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~v-ilL 268 (706)
..++.|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++ ..+.+++|++ ++|
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l 273 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFL 273 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEe
Confidence 25678999999999999999999999999999999999999999999999977 48999999996 5778999997 578
Q ss_pred eCCeEEEEcCchhH
Q 005252 269 SGGKTVYFGETSAA 282 (706)
Q Consensus 269 ~~G~iv~~G~~~~~ 282 (706)
++|++++.|++++.
T Consensus 274 ~~G~i~~~g~~~~~ 287 (305)
T PRK14264 274 TGGELVEYDDTDKI 287 (305)
T ss_pred cCCEEEEeCCHHHH
Confidence 99999999987654
No 243
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-39 Score=329.05 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=174.7
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--Cc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SF 127 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~ 127 (706)
..|+++|+++.+ +++.+|+++|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 358999999988 3457999999999999999999999999999999999999886 8999999987532 22
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+|++||+.+....+. . ...+.++++++.++|.+..++.+ ..||||||||++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHH
Confidence 458999999999999999999988754321 1 12345678899999987777755 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
+++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++.+++|++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999996 678999999999863
No 244
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.7e-40 Score=338.55 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=169.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|.++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~--~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCC--CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 468999998831 12356999999999999999999999999999999999999875 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCChHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGe 199 (706)
.+.++|++|++.+++ .||+||+.+..... ..++..+ .+.+.++.+ ++....++ .++.|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999998876 59999998753211 1111111 112222222 33222222 456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 789999999997 4554 8999999999999999987
Q ss_pred hhHHH
Q 005252 280 SAAFE 284 (706)
Q Consensus 280 ~~~~~ 284 (706)
++..+
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 76544
No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=358.22 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=195.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 126 (706)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.+||++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358899999999 5688999999999999999999999999999999999999986 99999999975421
Q ss_pred ---cCcEEEEecCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
...|+.|+|+..|.|+|||.||+.++...+. ..-+++++.+++..++|+.+|+....++.++ +||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 2458999999999999999999998865543 2346678888999999999999655788776 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|+|||||..+++||+||||||.|+......+.+.+++|+++|.+||++||.. +|++++||||.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999998883
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=338.79 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.|+++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+..+. ...+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 58999999988 3457999999999999999999999999999999999987531 1248999999986421
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
..+.++|++|++.+++. ||+||+.+..... ... .+..++++++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13469999999988875 9999998875432 111 223355677788888743211111 2245679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe---------CCe
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~---------~G~ 272 (706)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999996 67899999999998 899
Q ss_pred EEEEcCchhHH
Q 005252 273 TVYFGETSAAF 283 (706)
Q Consensus 273 iv~~G~~~~~~ 283 (706)
+++.|++++..
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999887653
No 247
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.1e-40 Score=377.63 Aligned_cols=244 Identities=26% Similarity=0.343 Sum_probs=196.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|++||.++++.+++.+. +.. ..+ .....++++|++++++. +++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~~~---------~~~-----~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----GSE---------PVP-----EGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----CCC---------CCC-----CCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 578999999999987654321 000 000 01124899999998842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
|+.++|+||||||||||+++|+|.++|+ +|+|.+||++... .++.++||+|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 8999999987532 13579999999999987 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++ +++.++..+ +.+..||.+|+ ....||||||||++|||+|+++|++++|||||++||+.+
T Consensus 415 ---~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 122222 333344433 44567888887 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+.+.|+++. +|+|+|+++|++. ..+.+|++++|++|+++..|+.++..
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999885 5899999999974 45779999999999999999987664
No 248
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-39 Score=376.35 Aligned_cols=248 Identities=25% Similarity=0.338 Sum_probs=193.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.++.+|+.++++.++..+. . ..+ . .. ......++++|+++.+. +.+++|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~-~---~~~---------~--~~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREE-P---ADA---------P--EL-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccC-C---ccC---------C--CC-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 567899999999986554321 0 000 0 00 01122599999999984 235689999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+||||||||||+++|+|.++|. +|+|.+||.+... .++.++||+|++.+++. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999886 8999999987532 23579999999999875 99999987531
Q ss_pred CCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRTLVE-----RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~-----~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
..+.++..+..+ +.+. .+.+..||.+|+ ....||||||||++|||+|+++|++|+||||||+||+.++.
T Consensus 435 ---~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~ 508 (585)
T TIGR01192 435 ---GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA 508 (585)
T ss_pred ---CCCHHHHHHHHHHhCcHHHHH--hccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 122333222221 1221 234456788876 46679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.+.+.|+++. +++|+|++||+++ . .+.+|+|++|++|++++.|+.++..+
T Consensus 509 ~i~~~l~~~~-~~~tvI~isH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 509 RVKNAIDALR-KNRTTFIIAHRLS-T-VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHh-CCCEEEEEEcChH-H-HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999884 5899999999973 4 46799999999999999999876643
No 249
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.7e-39 Score=332.47 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
+..+|+++.| +.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6677888776 4578999999999999999999999999999999999998875 8999999986421
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
..+...+.+.+||+||+.+..... ....++.++++.++++.++|.+..++.+ .+||||||||++|||+|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 112234556789999998875432 1233445567888999999988777755 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.+++|++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999996 5778899999999999998765
No 250
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-39 Score=326.56 Aligned_cols=197 Identities=25% Similarity=0.366 Sum_probs=170.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 6789999988 3467999999999999999999999999999999999999885 8999999987431 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+..... . . +..++++++++.+||.+..++.+ ..||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~--~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLH-G--P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhc-C--c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHH
Confidence 56899999999999999999998875432 1 1 22356888999999987777654 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
+|+++|++++|||||+|||+.+...+.+.|++++++|.|||++||++ +++-+..+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999997 4666666777766
No 251
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.1e-39 Score=332.76 Aligned_cols=219 Identities=28% Similarity=0.346 Sum_probs=177.5
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 125 (706)
++++||++.+. .+.+|+|+|+++++|++++|+||||||||||+++|+|+. +|. +|+|.++|++...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 78999999883 457999999999999999999999999999999999995 454 8999999976421
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhh-ccC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSAR-LRL--P-DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
..+.++|++|++.+++.+|+.+++.+... +.. . ......+..+.+++.++.+++. +..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 12458999999988888888777654321 110 0 0011223356778899999995 34444331 369999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~G 277 (706)
|||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 456665 8999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+.+.+.
T Consensus 229 ~~~~~~ 234 (248)
T PRK09580 229 DFTLVK 234 (248)
T ss_pred CHHHHH
Confidence 887543
No 252
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-40 Score=334.95 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=170.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 378999999883 2346999999999999999999999999999999999999885 8999999986421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSGG 198 (706)
..+.++|++|++.+++. ||+||+.+.... . .. ..+.+.++.+++.+..+ +..+ ..++.||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPN----A-TD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCC----C-CH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13469999999988876 999999875321 1 11 22333444444432222 1222 245689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|||||+||++|+.+|+++||||||+|||+.++..+++.|++++ +|+|||++||++. ++ +.||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999996 5899999999974 55 5699999999999999888
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
.++..
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76543
No 253
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-39 Score=331.43 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|..+|. +|+|.++|++... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999998831 1256999999999999999999999999999999999998875 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCChHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGGer 200 (706)
.+.++|++|++.+++ .||.||+.+.... .. .+.+.+.++.+++.+..++... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999764211 11 2345677888888765554321 113468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ +++|++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999765 89999999974 44 899999999999998754
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-39 Score=336.25 Aligned_cols=222 Identities=24% Similarity=0.314 Sum_probs=180.9
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecC--
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK-- 124 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~-- 124 (706)
...|+++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|++..
T Consensus 14 ~~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 14 QQKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34589999999983 4579999999999999999999999999999999999987521 24899999997532
Q ss_pred -------cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005252 125 -------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (706)
Q Consensus 125 -------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (706)
...+.++|++|++.+++. ||+||+.+..... ... ....++++.+.++.+++.+...... +..+..||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCC
Confidence 113468999999998886 9999998875422 111 2223456778888888742111111 12445799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 68999999996 678899999999999999999
Q ss_pred cCchhH
Q 005252 277 GETSAA 282 (706)
Q Consensus 277 G~~~~~ 282 (706)
|+.++.
T Consensus 242 g~~~~~ 247 (265)
T PRK14252 242 GATDTI 247 (265)
T ss_pred CCHHHH
Confidence 987654
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=318.54 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.+||++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46899999883 356999999999999999999999999999999999998875 8999999987431 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+|++||+. ||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999973 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.+.+|++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987789999999996 577889999999999874
No 256
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.6e-39 Score=336.01 Aligned_cols=198 Identities=28% Similarity=0.401 Sum_probs=171.4
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCH
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTV 145 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV 145 (706)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... ..+.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999998742 7999999987531 12458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh-------CCCEEEE
Q 005252 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (706)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~-------~p~llll 218 (706)
+||+.+.... ....++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886321 1223344567889999999987777654 5799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987899999999996 578899999999999999999987654
No 257
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=333.08 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=184.6
Q ss_pred eEEEEEeEEEEEEcc---------------CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 005252 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G 114 (706)
+.++++||+++|+.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 578999999988752 124467999999999999999999999999999999999999886 89
Q ss_pred EEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005252 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (706)
Q Consensus 115 ~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (706)
+|.++|+ ++++.|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.+ +.
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 356778877788899999998764432 1234445566778888889987776644 57
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||||++||++|+.+|++|||||||+|||+.+...+.+.|.+++++|+|||++||++ .++.+.+|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788899999999999999
Q ss_pred EEcCchhHHH
Q 005252 275 YFGETSAAFE 284 (706)
Q Consensus 275 ~~G~~~~~~~ 284 (706)
+.|+.++..+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877654
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.2e-39 Score=369.44 Aligned_cols=217 Identities=25% Similarity=0.301 Sum_probs=184.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G--------- 120 (706)
|+++|++++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+. +|+ +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999988 3467999999999999999999999999999999999996 464 89999972
Q ss_pred --------------Eec--------C-------cCcCcEEEEecC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 005252 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (706)
Q Consensus 121 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v 170 (706)
.+. . ..++.++||+|+ +.+++.+||+||+.+..... ..+.++.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 12344556789
Q ss_pred HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 005252 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (706)
Q Consensus 171 ~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (706)
.++++.+||++..++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999987777644 57999999999999999999999999999999999999999999999976 5899999
Q ss_pred EeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHH
Q 005252 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (706)
Q Consensus 250 ~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~ 285 (706)
+||++ ..+.++||++++|++|++++.|++++..+.
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 567889999999999999999988776553
No 259
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-39 Score=331.04 Aligned_cols=207 Identities=24% Similarity=0.388 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999988 3467999999999999999999999999999999999998875 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++. ||+||+.+...... .. ..+++++++++.+++. ...++. ++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHH
Confidence 13568999999988875 99999988644321 11 1234577899999995 355554 4579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe-CCeEEEEcC
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~-~G~iv~~G~ 278 (706)
||++|+.+|++++|||||+|||+.+...+.+.|+++++ .|.|||++||++ +++ +.+|++++|+ ++..+..|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999976 489999999997 455 5799999995 555555553
No 260
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.1e-39 Score=403.81 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=198.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
-.|+++||++.+.. +.+.+|+|||+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999831 2367999999999999999999999999999999999999886 8999999987531
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.+||++|++.+++.+||+|++.+.++++ ..+.++.+++++++++.+||.+..|+.++ .|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2356999999999999999999999877664 23445556778999999999988888664 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~ 285 (706)
|+||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++|||+++|.+|+++..|+++++...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999996 689999999999999999999999998876
Q ss_pred HH
Q 005252 286 FA 287 (706)
Q Consensus 286 f~ 287 (706)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
No 261
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=312.80 Aligned_cols=217 Identities=29% Similarity=0.409 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||.++| +...+|++||++.++|+++.|+|.|||||||+|+||.=+..|. .|.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48889999888 6788999999999999999999999999999999999888886 8999999975311
Q ss_pred ------C-------cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005252 126 ------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (706)
Q Consensus 126 ------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (706)
. +...++|+|..+|++++||.||+.-+..--+ ..++.+..++++..|.++||.+..|. ++
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 0 1246899999999999999999987632212 35688888999999999999888775 56
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ....+...+|+.|.+|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 68999999999999999999999999999999999999999999999999999999999996 56778899999999999
Q ss_pred EEEEcCchhHH
Q 005252 273 TVYFGETSAAF 283 (706)
Q Consensus 273 iv~~G~~~~~~ 283 (706)
+-++|+|+++.
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999998754
No 262
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.2e-39 Score=375.17 Aligned_cols=248 Identities=29% Similarity=0.429 Sum_probs=196.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++.+|+.++++.+++.+... .+ .+. ..+....++++|+++.++.+ .++.+|+|+|++++|
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~----~~-------~~~----~~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPA----HP-------KTL----PVPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCC----CC-------ccC----CcCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 57889999999998665422100 00 000 00112359999999998421 226799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+.+. .++.++|++|++.+|+. |++||+.++.
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~--- 438 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR--- 438 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC---
Confidence 9999999999999999999999999885 8999999987532 13569999999999987 9999998752
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+. +.+.+.++..|+ ++..|+.+|+ ....||||||||++|||+++++|++|+||||||+||+.+
T Consensus 439 -~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 439 -P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred -C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1 1122 334555555554 3456788876 356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+++.|+++. +++|+|++||++. ..+.+|+++.|++|+++..|+.++..
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 4799999999973 46789999999999999999977653
No 263
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.6e-39 Score=324.50 Aligned_cols=194 Identities=28% Similarity=0.364 Sum_probs=169.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
|+++||++.+ +.+.+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999988 3467999999999999999999999999999999999999885 8999999987421 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+.... . ..++++++++.++|.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD-------H--SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhccc-------c--cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHH
Confidence 5699999999998899999999875321 0 2356788999999987777654 569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
+|+.+|++++|||||+|||+.+...+.+.|++++++|.|+|++||++ .+....+|+++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999988899999999997 4677899999887
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.3e-39 Score=368.38 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cC--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK-- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~-G~~---~~-- 124 (706)
.|+++||++.|....++.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 59999999988421112356999999999999999999999999999999999999875 8999996 532 11
Q ss_pred ------cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCcccC
Q 005252 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHLR 193 (706)
Q Consensus 125 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~d~~vg~~~~~ 193 (706)
..++.++|++|++.+++.+||+||+.+...+. .+.++.+++++++++.+||.+ ..++ .+.
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 426 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YPD 426 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Chh
Confidence 11245999999998999999999998764321 223334567889999999975 3455 445
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999764 89999999996 57889999999999999
Q ss_pred EEEEcCchhHH
Q 005252 273 TVYFGETSAAF 283 (706)
Q Consensus 273 iv~~G~~~~~~ 283 (706)
+++.|+++++.
T Consensus 506 i~~~g~~~~~~ 516 (520)
T TIGR03269 506 IVKIGDPEEIV 516 (520)
T ss_pred EEEECCHHHHH
Confidence 99999887654
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=375.78 Aligned_cols=220 Identities=26% Similarity=0.316 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~------- 123 (706)
.|+++||+++|... .+.+++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~-~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCC-CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 59999999998421 12357999999999999999999999999999999999999885 89999998632
Q ss_pred ------C------cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 005252 124 ------K------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (706)
Q Consensus 124 ------~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~ 186 (706)
. .+.+.+|||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0 0123699999997 68888999999999865421 2345556678999999999963 3444
Q ss_pred ccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeE
Q 005252 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (706)
Q Consensus 187 vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~v 265 (706)
++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||++||++ ..+.++||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999999864 89999999996 6788999999
Q ss_pred EEEeCCeEEEEcCchhH
Q 005252 266 YLLSGGKTVYFGETSAA 282 (706)
Q Consensus 266 ilL~~G~iv~~G~~~~~ 282 (706)
++|++|++++.|++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 240 LVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEeeCCeecccCCHHHh
Confidence 99999999999998765
No 266
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.1e-40 Score=375.18 Aligned_cols=220 Identities=31% Similarity=0.418 Sum_probs=174.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+++.+. . ..+. ... . ......++++|++++|+ +++++|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~-~---~~~~-------~~~--~-~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPE-G---VVPA-------AGA--L-GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCC-C---CCCC-------Ccc--c-CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 578999999999987665321 0 0000 000 0 01123599999999994 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 157 (706)
||.+||+||||||||||+|+|+|.++|+ +|+|.+||.+... .++.++||+|++.+|+. |++|||.++.
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~---- 432 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR---- 432 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----
Confidence 9999999999999999999999999986 9999999987532 13579999999999988 9999999862
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 158 PDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
+ ..+++ ++.++++..++ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.++
T Consensus 433 ~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 433 P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 12222 34445554443 4667999997 4467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999874 579999999984
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.8e-39 Score=366.91 Aligned_cols=224 Identities=28% Similarity=0.349 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 125 (706)
.|+++|++++|..+ +..+.+|+|+||++++||++||+|||||||||||++|+|.++|. .+.+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 48999999998421 11357999999999999999999999999999999999999752 1248999999987421
Q ss_pred ------CcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 005252 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~d~~vg~~~~~~ 194 (706)
+.+.++||+|++. +++.+||+|++.+..... ...+..+..++++++++.+||.+. .++. +.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY-----PHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC-----Ccc
Confidence 1146999999974 667789999988654321 123345566788999999999752 4554 457
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ ..+.++||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 577889999999999999
Q ss_pred EEEcCchhHH
Q 005252 274 VYFGETSAAF 283 (706)
Q Consensus 274 v~~G~~~~~~ 283 (706)
++.|++++..
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999887653
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.1e-39 Score=368.46 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCC------ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 005252 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 124 (706)
.|+++|+++.|..+.+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ . +|+|.++|++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999999842110 13579999999999999999999999999999999999984 3 899999998642
Q ss_pred c--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 005252 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (706)
Q Consensus 125 ~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~ 193 (706)
. .++.++||+|++ .+++.+||+||+.++...... ..+..+.+++++++++.+||. +..++. +.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124589999996 478889999999987543211 123344556788999999997 456664 45
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999996 57889999999999999
Q ss_pred EEEEcCchhHH
Q 005252 273 TVYFGETSAAF 283 (706)
Q Consensus 273 iv~~G~~~~~~ 283 (706)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999877653
No 269
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.8e-39 Score=321.88 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCc----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 125 (706)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. +|. +|+|.+||++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999883 457999999999999999999999999999999999994 454 8999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
....++|++|++.+++.+|+++++. . ..+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1234999999999888888887760 0 1135999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-hCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~-~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++|++++.|+.+ +
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-L 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-H
Confidence 9999999999999999999999999999999999999877899999999974 5666 79999999999999999544 4
Q ss_pred HHHH
Q 005252 283 FEFF 286 (706)
Q Consensus 283 ~~~f 286 (706)
.+.+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4444
No 270
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-40 Score=319.28 Aligned_cols=218 Identities=26% Similarity=0.420 Sum_probs=193.0
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 126 (706)
++++|+++++ +.+.||+|+|.++++|.+++|+|||||||||||.+++++++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6789999998 6789999999999999999999999999999999999999886 99999999875321
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++.+-|+.++...+||+|-+.|+.-- .......++.+..+++.++.++|++..|+++ .+||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 24578889999999999999999998422 1223345566788999999999999998865 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+.|+++.+.++||||.++||-..+..+|+.|++++++ |+|||++.||. .....++|+|+-|++|+++..|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999975 99999999996 56778999999999999999999998753
No 271
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.7e-39 Score=333.02 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 48999999998 3467999999999999999999999999999999999999885 899999873 358
Q ss_pred EEEecCCCCCCC--CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 131 AYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 131 ~yv~Q~~~l~~~--lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
+|++|++.+++. .|+++++.+. + ... .+++.++++.+||.+..++.+ ..||||||||++||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 999999887765 3788876532 1 111 245678899999988777654 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+.+|++++|++ +++..|++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999875 89999999996 578899999999964 79999987754
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-39 Score=332.44 Aligned_cols=211 Identities=32% Similarity=0.427 Sum_probs=168.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+. +.+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|. +|+|.+||++... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46899999873 2356999999999999999999999999999999999999875 8999999986421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGe 199 (706)
++.++|++|++.+++ .||+||+.+.... .+..+ +.+.++..++.+ ..++.+.. .++.|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGE-RGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHH
Confidence 246999999998886 5999999875321 11111 222233333321 12222222 356899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++ +++ ..+|++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STI-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999997 455 45999999999999998887
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
++..
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6543
No 273
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=350.23 Aligned_cols=247 Identities=26% Similarity=0.386 Sum_probs=201.5
Q ss_pred hHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeE
Q 005252 5 AASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTL 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~ 84 (706)
.-.+|.+++++++|+..+.. |-.| .......++|+|+++.|+ ++|++|+||||++.||+.
T Consensus 507 iDmEnmfdllkee~eVvd~P--~a~p--------------l~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGkt 566 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLP--GAPP--------------LKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKT 566 (790)
T ss_pred hhHHHHHHHhhcCchhhcCC--CCCC--------------ccccCCeEEEEEeEEecC----CCCceeecceEEecCCcE
Confidence 34689999999888864311 1111 112344699999999995 568999999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC
Q 005252 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 159 (706)
+|++||||+||||++++|-+..+.+ +|.|.+||++++. -++.||.||||..||++ |+..|+.|+..-.
T Consensus 567 vAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~A--- 639 (790)
T KOG0056|consen 567 VALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSA--- 639 (790)
T ss_pred EEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCC---
Confidence 9999999999999999999988765 9999999998532 24679999999999988 9999999874321
Q ss_pred CCCHHHHHH--HHHHHH-HHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005252 160 KMPWSEKRT--LVERTI-IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (706)
Q Consensus 160 ~~~~~~~~~--~v~~~l-~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 236 (706)
+.++..+ ++.++- +.++..+..+|+||++..+ |||||||||+|||+++++|.+++|||.||+||..+.+.|...
T Consensus 640 --sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa 716 (790)
T KOG0056|consen 640 --SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA 716 (790)
T ss_pred --ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH
Confidence 2333222 111121 2268899999999986655 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 237 L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|.+++. ++|.|++.|..+. .-.+|.|+++++|+|++.|.-+|.+.
T Consensus 717 L~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 717 LARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 999986 6899999999753 45699999999999999998887654
No 274
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-39 Score=315.96 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRY-----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEE-----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 4689999988 3467999999999999999999999999999999999999875 8999999986421
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135699999999998889999997542 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+.+|++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999887 89999999996 56778999999999885
No 275
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-38 Score=324.33 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=170.8
Q ss_pred EEEEeEEEEEEccC-Cc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecC-
Q 005252 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTK- 124 (706)
Q Consensus 52 l~~~~ls~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~--G~--~~~- 124 (706)
|+++|+++.+..++ ++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++ |+ +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 68899999984321 11 247999999999999999999999999999999999999885 8999998 42 221
Q ss_pred c--------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 005252 125 L--------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (706)
Q Consensus 125 ~--------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~L 195 (706)
. ..+.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+||.+. .+.. +.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccC
Confidence 0 1246899999999999999999998864432 12334445678889999999753 3543 4579
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+++|+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987899999999995 56778999998763
No 276
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-38 Score=321.75 Aligned_cols=197 Identities=28% Similarity=0.371 Sum_probs=168.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CcC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (706)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 58999999998 3457999999999999999999999999999999999998875 8999999986432 234
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|++.+++.+||+||+.+..... . . ..+.++++++.+||.+..++.+ +.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-~--~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL-G--G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc-C--C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHH
Confidence 6899999998888899999998765432 1 1 1234788999999987666644 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
|+.+|+++||||||+|||+.+...+.+.|++++++|+|||++||++ .++.. |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999988899999999996 45554 99888743
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=364.66 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEecCc----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~~G~~~~~---- 125 (706)
.|+++||++.+.. ++++.+|+|+||++++||+++|+||||||||||+|+|+|+++| + +|+|.++|++...
T Consensus 259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 5899999987731 1235699999999999999999999999999999999999873 4 8999999987431
Q ss_pred --CcCcEEEEecCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 --~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
..+.++|++|++ .+++.+||.||+.+........ ..+.++.+++++++++.++|. +..++.+ ..|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 124589999995 4788899999998763211110 012334456789999999996 4667655 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87653
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.1e-38 Score=320.07 Aligned_cols=193 Identities=27% Similarity=0.358 Sum_probs=164.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999988 3467999999999999999999999999999999999998875 8999999986421 12
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++.+||+||+.+...... . + ++.+.++++.+||.+..++.+ ..||||||||++||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999989888999999988654321 1 1 245788999999987777655 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEE
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vil 267 (706)
+|+.+|++++|||||+|||..++..+.+.|++++++|.|||++||++.. -.+|+++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999998889999999999742 34577654
No 279
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-39 Score=300.96 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.+.++++++.| +..++|.|++++.+.||.+.++||||+|||||++.|.=+..|. +|+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCcc
Confidence 47889999988 5678999999999999999999999999999999998777775 8999998864211
Q ss_pred ------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH
Q 005252 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 126 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
-++.+|.|+|+-+++|++||.|||.-+. ++. ..+++++.+.+..++++++.|.+.+|+ .+-.|||||
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggq 146 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQ 146 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccch
Confidence 1357899999999999999999998753 221 246788888999999999999999988 456799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
+|||+|||||+.+|++|++||||++||++-..++++++++++..|.|-+++||.. ....+.+.+|+.|.+|++++.|+.
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999999999999999999995 566788999999999999999986
Q ss_pred h
Q 005252 280 S 280 (706)
Q Consensus 280 ~ 280 (706)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 4
No 280
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=363.73 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999753 23899999999999999999999999999999999999885 8999999986421
Q ss_pred -CcCcEEEEecC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 005252 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (706)
Q Consensus 126 -~~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 194 (706)
.++.++||+|+ ..+++.+||+||+.+....+ ... . ....+.++.++++++.+||. +..++.+ ..
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46888999999998753211 000 0 11223345678999999996 6677755 46
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999996 5788999999999999999
Q ss_pred EEcCc
Q 005252 275 YFGET 279 (706)
Q Consensus 275 ~~G~~ 279 (706)
+.++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 281
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-38 Score=334.70 Aligned_cols=212 Identities=25% Similarity=0.324 Sum_probs=176.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+.. +.+.+|+|+|++|++||+++|+|+||||||||+++|+|+++ . +|+|.+||.+...
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 3789999999842 23569999999999999999999999999999999999986 3 7999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSGG 198 (706)
.++.++||+|++.+|+. ||+||+..... .+. +.+.+.++.+||.+..+. .+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13579999999999986 99999963211 112 345677788888654443 3433 34569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999875 589999999997 4554 599999999999999999
Q ss_pred chhHHH
Q 005252 279 TSAAFE 284 (706)
Q Consensus 279 ~~~~~~ 284 (706)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 988764
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-38 Score=324.77 Aligned_cols=207 Identities=25% Similarity=0.369 Sum_probs=169.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++++.. ..+.+|+|+||++++||+++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999998841 2357999999999999999999999999999999999998885 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSGG 198 (706)
..+.++|++|++.+++ .||+||+.+... ... +.+.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 1356999999998876 499999964321 111 23455566666654332 2222 256789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ .++. .+|++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999997 4554 599999999999998875
No 283
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-38 Score=314.26 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899998765 899999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEecCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 135699999994 57888999999976421 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|++||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.+++|++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987789999999996 578899999999999974
No 284
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=327.95 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=172.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---------CcCcCcEEEEecCCCCCCCCC
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 144 (706)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||+-. ...++++||||||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776899999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005252 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (706)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsg 224 (706)
|+.||.|+.... .....+++.+.+|+++..++ +|..|||||||||+|||||+++|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985432 23457888899999999988 4567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||-....+++-.|++|+++ +..|+.+||.+ .|+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999975 89999999996 79999999999999999999999987653
No 285
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-38 Score=400.66 Aligned_cols=249 Identities=18% Similarity=0.248 Sum_probs=198.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+||.|+++.+++.+... .+..| +. ..+....|+++|++++|.. +.+++|+|+|++|+|
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~-~~~~~----------~~--~~p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAII-ENNRP----------VS--GWPSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCccccccc-cCCCC----------CC--CCCCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 46789999999998776643211 00000 00 0011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .++.++|||||+.+|+. |+||||.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999986 8999999998532 24679999999999988 9999997541
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.+ .+.++++..++ .+..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1335 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 12232 34455555444 4567899986 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
...|.+.|++.. +++|+|+++|+++ . ...||+|++|++|++++.|++++..+
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRLN-T-IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 4799999999974 3 45699999999999999999988753
No 286
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.7e-39 Score=367.10 Aligned_cols=229 Identities=31% Similarity=0.426 Sum_probs=182.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+++++++|+.++++.+++... ..+ .+ . ...-.++++|++++|+. ..+++|+|+|++++|
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~-----~~~---------~~--~--~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG-----KAP---------VT--A--APAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC-----CcC---------CC--C--CCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 578899999999974432110 000 00 0 01125999999999942 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999997532 24579999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..++ +.+.+.++..++ .+..||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234455555554 3457899987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
+..+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 999999999885 5799999999973 35789999875
No 287
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-38 Score=399.89 Aligned_cols=249 Identities=21% Similarity=0.254 Sum_probs=199.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+|+.++.+.+++.+... .+..| +. .-+....|+|+|++++|.. +.+++|+|+|++|+|
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~-~~~~~----------~~--~wp~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVI-ENNRP----------PP--GWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccc-cCCCC----------CC--CCCCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 46789999999998766643210 00000 00 0011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .++.+++||||+.+|+. ||||||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999986 8999999998532 24679999999999988 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.+ .+.++++..++ .+..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 12222 34444444443 4567999987 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
...|.+.|++.. +++|+|+++|+++ . ...||+|++|++|++++.|+++++.+
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~-t-I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN-T-IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH-H-HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999875 4799999999974 3 45699999999999999999998763
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-38 Score=361.22 Aligned_cols=207 Identities=24% Similarity=0.253 Sum_probs=177.9
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-C---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-S--- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~--- 126 (706)
.|+++|+++.| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 48999999998 3456999999999999999999999999999999999999885 8999999875321 1
Q ss_pred -cCcEEEEecCCCC--C------CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 127 -FGTAAYVTQDDNL--I------GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 127 -~~~~~yv~Q~~~l--~------~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
.+.++|++|++.+ + ..+||+|++.+. .+.+++++++++.+||.+..++.+ ..|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 2458999998643 1 146888887532 122456889999999988777755 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+.||++++|++|++++.|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988899999999996 5788999999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
++++.
T Consensus 218 ~~~~~ 222 (490)
T PRK10938 218 EREEI 222 (490)
T ss_pred CHHHH
Confidence 87764
No 289
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-38 Score=347.98 Aligned_cols=213 Identities=21% Similarity=0.294 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.++++||++.+.. +..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~--~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD--GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCC--CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 5889999887732 12356999999999999999999999999999999999999885 89999999752
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
++.+...+.+.+||+||+.+..... ..+.++..++++++++.++|.+..++.+ +.||||||||++|||+|+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 2233445667789999998754322 1234455567888999999988777754 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHH
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~ 285 (706)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++..-
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999987899999999996 578899999999999999999998876643
No 290
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9.8e-39 Score=326.83 Aligned_cols=210 Identities=29% Similarity=0.423 Sum_probs=168.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
-.++++|+++.+..+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHH
Confidence 358999999998421 1246999999999999999999999999999999999999885 8999999976421
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
..+.++|++|++.+++ .||+||+.++..........+...+..++++++.+ |+++..++. ++.||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qr 158 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLSGGQKQR 158 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCCHHHHHH
Confidence 1356999999998876 59999998753211000000011112356778888 776555553 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++. ++ ..+|++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999865 689999999974 56 45999999999874
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.7e-38 Score=312.11 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||++... .+
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899998831 1236999999999999999999999999999999999998875 8999999986421 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56899999998886 5999987 2369999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||+++|++. ++ ..+|++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 5899999999974 55 579999999999998764
No 292
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3e-38 Score=322.89 Aligned_cols=196 Identities=28% Similarity=0.452 Sum_probs=164.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCC--CCCCHHHHHHHHhh
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~ 154 (706)
+++++||+++|+||||||||||+++|+|+++++ +|+|.+||++.....+.++|++|++.++ ..+|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468899999999999999999999999999885 8999999987533345699999998764 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005252 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (706)
Q Consensus 155 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i 233 (706)
.... ......+.++++.++++.+++++..++.+ .+||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00112233456889999999987777654 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 234 ~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
.+.|++++++|+|+|++||++ +++.+++|+++++ +|++++.|+.++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999987899999999996 5788999999999 8999999987764
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.3e-38 Score=310.07 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. ..+.+++|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.+||++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468999998731 2256999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999987 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+ +.||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987899999999997 455 68999999999974
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.3e-38 Score=358.50 Aligned_cols=221 Identities=22% Similarity=0.350 Sum_probs=183.2
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++|+++.+.. ++++.+|+|+||++++||+++|+||||||||||||+|+|.++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCcccccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 35899999987621 12356999999999999999999999999999999999999751 28999999987531
Q ss_pred --CcCcEEEEecCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCh
Q 005252 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (706)
Q Consensus 126 --~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSG 197 (706)
.++.++||+|+. .+++.+||+||+.+...-... ......+.++.++++++.++|.+ ..++.+ ..|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCH
Confidence 124689999995 588999999999875321110 01223344567889999999964 467655 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999877
Q ss_pred Cch
Q 005252 278 ETS 280 (706)
Q Consensus 278 ~~~ 280 (706)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
No 295
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.6e-38 Score=314.21 Aligned_cols=176 Identities=34% Similarity=0.492 Sum_probs=151.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------CcCcEEEEecCCC--
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-------~~~~~~yv~Q~~~-- 138 (706)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 456999999999999999999999999999999999999885 8999999987421 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEE
Q 005252 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (706)
Q Consensus 139 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llll 218 (706)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..++.+ ..||||||||++|||+|+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 469999999865422 1234445567889999999987777754 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999999888999999999963
No 296
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.5e-38 Score=315.59 Aligned_cols=192 Identities=22% Similarity=0.277 Sum_probs=164.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----Cc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 127 (706)
|+++|+++.+ +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+||++... ..
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 7899999988 3467999999999999999999999999999999999999885 8999999986431 13
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++|+..+++.+||+||+.+..... .. ...++++++.+++.+..++.+ ..||||||||++||+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999998888899999998864211 11 246788999999987666654 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi 266 (706)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ....+|...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999999878999999999964 345577543
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=326.70 Aligned_cols=227 Identities=32% Similarity=0.427 Sum_probs=199.0
Q ss_pred ceeEEEEEeEEEEEEccCC------ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 48 VSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
.+..++.+|+++.|..+.+ ....++++||+++++||.++|+|+||||||||=.+|.+++++ +|+|.++|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCc
Confidence 5678999999999976532 235689999999999999999999999999999999999876 699999998
Q ss_pred ecCc--------CcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005252 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (706)
Q Consensus 122 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (706)
++.. .++.+-.|+||| .|.|.+||.|-+.-+....-| ..+.+++.+++.+.|+++||+... -+.+
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RY 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRY 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcC
Confidence 7531 135678999997 588999999999999877644 467889999999999999996422 2347
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
+++.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++++||. .-+..+||+|++|++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~ 502 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRD 502 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeC
Confidence 889999999999999999999999999999999999999999999999975 589999999995 678899999999999
Q ss_pred CeEEEEcCchhHHH
Q 005252 271 GKTVYFGETSAAFE 284 (706)
Q Consensus 271 G~iv~~G~~~~~~~ 284 (706)
|+||+.|+++++.+
T Consensus 503 GkiVE~G~~~~if~ 516 (534)
T COG4172 503 GKIVEQGPTEAVFA 516 (534)
T ss_pred CEEeeeCCHHHHhc
Confidence 99999999987653
No 298
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=306.53 Aligned_cols=232 Identities=27% Similarity=0.389 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++||++++. +++.||++||+++++||+.+||||||||||||.++|+|.-.. ..++|+|+++|+++..
T Consensus 2 ~~L~I~dLhv~v~----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVE----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEec----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHh
Confidence 3689999999993 225899999999999999999999999999999999998543 3579999999998531
Q ss_pred -C-cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHH
Q 005252 126 -S-FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 -~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqR 202 (706)
+ +..+...+|.|.=++..|+.+.|..+.+.+........+....+++.++.+++.. .+++.+.. |+|||||||
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR 152 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKR 152 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHH
Confidence 1 3457789999999999999999998876543321113456678889999999986 67777653 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC--CeEEEEeCCeEEEEcCch
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~--D~vilL~~G~iv~~G~~~ 280 (706)
..|+..++.+|++.+||||-||||..+-+.|.+.+++++.+|.+++++||.. .+.++. |++.+|.+|+|+..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-
Confidence 9999999999999999999999999999999999999999999999999984 678887 99999999999999999
Q ss_pred hHHHHHHhcCCCC
Q 005252 281 AAFEFFAQAGFPC 293 (706)
Q Consensus 281 ~~~~~f~~~g~~~ 293 (706)
++.+.++..||.|
T Consensus 230 el~~~le~~gy~~ 242 (251)
T COG0396 230 ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHhchHH
Confidence 7888888888865
No 299
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.5e-38 Score=327.75 Aligned_cols=212 Identities=22% Similarity=0.278 Sum_probs=169.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 19 ~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 19 EIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHT 92 (257)
T ss_pred eEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHH
Confidence 5899999999831 1256999999999999999999999999999999999998875 8999999987431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGG 198 (706)
..+.++|++|++.+++. |++||+..... ... ..+.+.++..++.+ ..++.++. ..+.||||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G 160 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK------CTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVG 160 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC------CCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHH
Confidence 13569999999988875 99999853210 111 11223333333322 12333332 45689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++. .+|++++|++|++++.|+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~ 237 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDT 237 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 4899999999974 555 499999999999999998
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
+++..
T Consensus 238 ~~~~~ 242 (257)
T cd03288 238 PENLL 242 (257)
T ss_pred HHHHH
Confidence 87654
No 300
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-37 Score=314.30 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4889999998831 1246999999999999999999999999999999999998885 8999999987421
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .++.|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999996531 1111 12333333 2 22 456799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||+|+.+|++++|||||+|||+.+...+.+.|+++. +|+|+|++||++. ++.. +|++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 5899999999974 5544 999999999999988763
No 301
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.3e-38 Score=394.32 Aligned_cols=249 Identities=20% Similarity=0.264 Sum_probs=198.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+||.++++.+++.+. ...+..| +..| +....|+|+|++++|.. +.+.+|+|||++++|
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~-~~~~~~~--~~~w----------p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPW-QIQETAP--PSGW----------PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccc-cccCCCC--CCCC----------CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 578899999999987765321 0000000 0000 11235999999999952 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .++.++|||||+.+|+. |+||||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999886 8999999998532 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.+ .+.++++..++ .+..||.+|+ ....||||||||++|||||+++|+||+||||||+||+++
T Consensus 1385 ---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 12232 34455555554 3567999986 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
...|.+.|++.. +++|||+++|+++ ....+|+|++|++|++++.|++++..+
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 4799999999974 356799999999999999999988764
No 302
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=356.31 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++++|+++ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 588888873 2699999999999999999999999999999999999885 8999999987421
Q ss_pred -CcCcEEEEecCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 -~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
.++.++||+|++ .+++.+||+||+.+....... .....++.+++++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 124599999995 578889999999875321100 0122334456788999999995 5667755 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6788999999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87654
No 303
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9.3e-38 Score=337.60 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.++++++++.| +...+++|||+++++||++||+|+||||||||+++|.|.+.|+ +|+|.+||++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 48899999999 4688999999999999999999999999999999999999997 99999999985321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
+..||.|.|...|++++||.||+..+..-......+.++.+++++++.++.||.-..|.+|+ +||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24589999999999999999999998653222245677888999999999999988888776 49999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.. .|+.+.|||+.+|++|+++-.-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999986655
No 304
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=356.66 Aligned_cols=214 Identities=21% Similarity=0.311 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|..+|. +|+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888862 24899999999999999999999999999999999999875 89999999864311
Q ss_pred --cCcEEEEecCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
++.++|++|++ .+++.+||.||+.+...... +.. ....+.++.++++++.+++. +..++.++ .|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCH
Confidence 24689999996 48888999999987532110 000 12223345688999999994 66777654 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+||++|+.+|++|||||||+|||..++..+++.|++++++|.|||++|||+ .++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999998899999999996 6788999999999999999999
Q ss_pred CchhH
Q 005252 278 ETSAA 282 (706)
Q Consensus 278 ~~~~~ 282 (706)
+++++
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 87653
No 305
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.3e-38 Score=315.10 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=154.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
++++||++.+..+....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999988321000136999999999999999999999999999999999999885 89999998 589
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHH
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
|++|++.+++ .|++||+.+.... ..+ ...+.++.+++.+ ..++.+.. .+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHH
Confidence 9999998885 5999999875321 111 1222333333321 12233322 45689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
|||+|+.+|++++|||||+|||+.+...+.+ ++++++++|+|||++||++ ..+.. +|++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4666766789999999997 45555 99999999985
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-37 Score=357.08 Aligned_cols=232 Identities=22% Similarity=0.223 Sum_probs=183.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|.+|+.++++.+++.+. . . ..+ .. ....++++|++++|+ +++++|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~----~---------~~~--~~--~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P----R---------PQA--FP--DWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c----c---------ccc--cC--cCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 578899999999764432110 0 0 000 00 112599999999994 234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+++|+|.++|+ +|+|.+||++... .++.++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999886 8999999998542 23679999999999887 88887 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~--~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~ 234 (706)
+ ...++.+++.++.+++.+..+. ++. ....||||||||++|||+|+++|++|+||||||+||+.++..+.
T Consensus 418 -~-----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1123457788888888754332 221 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 235 ~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
+.|.+..+ +|+|+|+++|++. ..+.+|++++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 99976644 5899999999973 5788999999999999866
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-37 Score=388.55 Aligned_cols=244 Identities=26% Similarity=0.401 Sum_probs=190.2
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|.+|++||.++++.+|..+. ...+ .. ... . ..|+++||++.|... +.+++|+|+|+++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~~-----------~~---~~~-~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDDG-----------KK---LKD-I-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCCC-----------cc---CCC-C-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 688999999999998776432 0000 00 001 1 159999999999421 235699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~-G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
||++||+||||||||||+++|+|+++|. +|+|++| |.+... .++.++||+|++.+|+. ||+||+.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999986 9999995 565421 13569999999999986 999999987421
Q ss_pred cC----------CC------------C---------------------C-----CHHHHHHHHHHHHHHcCC-------C
Q 005252 156 RL----------PD------------K---------------------M-----PWSEKRTLVERTIIEMGL-------Q 180 (706)
Q Consensus 156 ~~----------~~------------~---------------------~-----~~~~~~~~v~~~l~~lgL-------~ 180 (706)
.. +. . . .....++.+.++++.+++ .
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112446666666654 4
Q ss_pred ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHH
Q 005252 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (706)
Q Consensus 181 ~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~ 259 (706)
+..||.+|+ ....||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i- 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI- 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-
Confidence 556888886 4678999999999999999999999999999999999999999999999976 5899999999974 44
Q ss_pred hhCCeEEEEeCC
Q 005252 260 ELFDRLYLLSGG 271 (706)
Q Consensus 260 ~~~D~vilL~~G 271 (706)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.1e-38 Score=308.92 Aligned_cols=174 Identities=38% Similarity=0.561 Sum_probs=149.3
Q ss_pred EEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----c
Q 005252 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (706)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~ 127 (706)
+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||++.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 3688998882 356999999999999999999999999999999999999885 89999999864211 1
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.++|++| +++.+||.+..++. ++.||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 23555555 56667776655553 4579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999876 89999999996 5677999999999999998654
No 309
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.5e-37 Score=352.81 Aligned_cols=212 Identities=23% Similarity=0.309 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.|+++|++. .+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++....
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588898872 1599999999999999999999999999999999999885 89999999865321
Q ss_pred --cCcEEEEecCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHH
Q 005252 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 127 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGer 200 (706)
++.++|++|++ .+++.+|+.||+...............+.++.++++++.+||+ +..++.+ +.||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 4788899999986431111110011223345688999999997 6677755 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||+ .++.++||++++|++|++++.|.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6788999999999999999988775
Q ss_pred h
Q 005252 281 A 281 (706)
Q Consensus 281 ~ 281 (706)
+
T Consensus 489 ~ 489 (510)
T PRK15439 489 A 489 (510)
T ss_pred c
Confidence 4
No 310
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.3e-37 Score=333.50 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.1
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 005252 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (706)
Q Consensus 87 I~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 163 (706)
|+|||||||||||++|+|+.+|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999886 8999999987532 2357999999999999999999999986532 2234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005252 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (706)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (706)
++.+++++++++.++|.+..++. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 55567789999999998877775 4579999999999999999999999999999999999999999999999764
Q ss_pred -CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 244 -g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+|+|++||++ .++.++||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999996 6789999999999999999999988764
No 311
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.4e-37 Score=354.19 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=170.2
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..++++|++++|..+++..+.+|+|+|+++++||.+||+||||||||||+++|+|.++|+ +|+|.+||.+...
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999999532111246999999999999999999999999999999999999886 8999999988542
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCcccCCCChHHHHHH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRV 203 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v-g~~~~~~LSGGerqRv 203 (706)
.++.++||+|++.+|.. |+++|+. + ...++.+++.++.+++.+..+..- |......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999877 8888841 1 112345778888888875443321 1112357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
+|||+|+++|++++|||||++||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 56567899999999974 4689999999999999853
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=351.68 Aligned_cols=218 Identities=27% Similarity=0.352 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++|+++.+..+ .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||++...
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 58999999998421 12357999999999999999999999999999999999999885 8999999987432
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.++|++|+..+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+.. ..|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1356999999999999999999999865322 2234556678899999999988777754 469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. . .+.||++++|++|++++.|++++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-V-AAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-H-HHhCCEEEEEECCEEEeecCccc
Confidence 999999999999999999999999999999999999999878999999999963 4 46799999999999999998864
Q ss_pred H
Q 005252 282 A 282 (706)
Q Consensus 282 ~ 282 (706)
.
T Consensus 230 ~ 230 (648)
T PRK10535 230 K 230 (648)
T ss_pred c
Confidence 4
No 313
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.6e-37 Score=385.70 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=181.9
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+|+||+++|.. +.+.+|+||||+|+|||.+||+|+||||||||+++|.|+++|. +|+|++||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999942 2346999999999999999999999999999999999999986 8999999998532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCh
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSG 197 (706)
.++.++|||||+.+|+. ||||||.... ..+. +.+.++++..+|. +..||.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999988 9999995421 1222 3455666666653 457899986 4567999
Q ss_pred HHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
|||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+|+|+++ ....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999998864 4799999999974 4678999999999999999
Q ss_pred cCchhHHH
Q 005252 277 GETSAAFE 284 (706)
Q Consensus 277 G~~~~~~~ 284 (706)
|++++..+
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99988753
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.7e-37 Score=297.64 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
|+++|+++.+. .+++|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999983 457999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1235777777 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
||+|+.+|++++|||||+|||..++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999996 56788999999999999875
No 315
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.5e-37 Score=311.75 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=158.4
Q ss_pred EEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------
Q 005252 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (706)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------- 125 (706)
.+.|+.+.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|++...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4567777773 2367999999999999999999999999999999999999875 8999999976321
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LS 196 (706)
.++.++|++|++.++ ..|++||+.+.... .. +...++++.++|.+.. ++..+. .+..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCC
Confidence 124689999999887 46999999875311 11 1233445555654322 222222 467899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
|||||||+||++|+.+|++|||||||+|||+.+...+++ .++.+.++|.|+|++||++. .+ ..+|++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 67777667899999999974 45 5799999999874
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-37 Score=300.65 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998831 1136999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+.++|++|++.+++ .|+.||+ ||||||||++||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 346899999998876 5998886 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||++ .++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999964 79999999997 45655 99999999885
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.9e-36 Score=318.27 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.2
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 345899999974 256999999999999999999999999999999999999885 89999988
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerq 201 (706)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875321 11 11223333334332 12333332 45689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
|++||++|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||++||++. ++ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 4799999999974 44 689999999999999999987
Q ss_pred hHH
Q 005252 281 AAF 283 (706)
Q Consensus 281 ~~~ 283 (706)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 654
No 318
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.4e-36 Score=381.87 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=199.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCc---chhhh-hhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEE
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPL---SETIW-KEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTG 77 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~ 77 (706)
+++.|.+||.++.+.+++..... .+..+. .+... ....+... +....|+|+||+++|.. +.+.+|+|||+
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~w--p~~g~I~f~nVs~~Y~~---~~~~vL~~is~ 1240 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPS-GGGGKYQLSTVLVIENPHAQKCW--PSGGQMDVQGLTAKYTE---AGRAVLQDLSF 1240 (1490)
T ss_pred HHHHHHHHHHHHhcCCCcccccc-ccccccccccccccccCCCCCCC--CCCCeEEEEEEEEEeCC---CCcceeeccEE
Confidence 35789999999998766543210 000000 00000 00000000 11236999999999952 34679999999
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
+|+|||.+||+|+||||||||+++|.|+++ . +|+|++||.++.. .++.++||||++.+|+. ||||||...
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~ 1315 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY 1315 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc
Confidence 999999999999999999999999999985 3 8999999998532 24679999999999998 999999542
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgL 225 (706)
. ..+ ++.+.++++..+|. +..|+.+|+ ....||||||||++|||||+++|+||+||||||+|
T Consensus 1316 ~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~l 1384 (1490)
T TIGR01271 1316 E------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384 (1490)
T ss_pred c------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC
Confidence 1 112 24466677777663 467899986 45679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 226 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 226 D~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
|..+...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|+++++.+
T Consensus 1385 D~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1385 DPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999874 4799999999974 456699999999999999999987763
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-36 Score=297.56 Aligned_cols=164 Identities=33% Similarity=0.483 Sum_probs=144.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
++++|+++.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999883 2356999999999999999999999999999999999999885 899999874 5689
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
|++|++.++ ..||+||+.+. .++.||||||||++|||+|+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998652 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++. ....+|++++|++|.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999886 589999999973 457999999998653
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=348.67 Aligned_cols=209 Identities=22% Similarity=0.337 Sum_probs=174.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
|+++|+++++ +.+++|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999998 3467999999999999999999999999999999999999885 899999873 3589
Q ss_pred EEecCCCCCCCCCHHHHHHHHhh-c-----------cCCCC-----------------CCHHHHHHHHHHHHHHcCCCcc
Q 005252 132 YVTQDDNLIGTLTVRETISYSAR-L-----------RLPDK-----------------MPWSEKRTLVERTIIEMGLQDC 182 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~ 182 (706)
|++|++.+++.+||+|++.++.. . ..+.. ....+.+++++++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999999999999999987531 0 00000 0001234578899999999753
Q ss_pred c-cccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh
Q 005252 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (706)
Q Consensus 183 ~-d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~ 261 (706)
. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++ ..+.++
T Consensus 148 ~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 333 457999999999999999999999999999999999999999999863 589999999996 578899
Q ss_pred CCeEEEEeCCeE-EEEcCchhHH
Q 005252 262 FDRLYLLSGGKT-VYFGETSAAF 283 (706)
Q Consensus 262 ~D~vilL~~G~i-v~~G~~~~~~ 283 (706)
||++++|++|++ ++.|++++..
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHH
Confidence 999999999999 4888877654
No 321
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-36 Score=303.57 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=159.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CcCcE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 130 (706)
++++|+++++. .+.+++ +|+++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 68899999982 344555 99999999999999999999999999999999885 8999999987532 22458
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
+|++|++.+++.+||+||+.+..... . ..+.++++++.+++.+..++.+ +.||||||||++||++|+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865322 1 1245778889999987666644 569999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeE
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~v 265 (706)
.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++. + .+.+|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-c-cchhhee
Confidence 999999999999999999999999999877777899999999974 3 3446654
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-36 Score=347.77 Aligned_cols=210 Identities=24% Similarity=0.318 Sum_probs=175.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++||++.|. +++.+|+|+||++++|++++|+|||||||||||++|+|.++|. +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3699999999982 1467999999999999999999999999999999999999885 899999752 45
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhh-cc------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSAR-LR------------LPDKMP--------------------WSEKRTLVERTIIE 176 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~-l~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (706)
++||+|++.+++.+||.||+.++.. .. ...... ..+..++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 8999999999999999999987531 00 000000 00123567889999
Q ss_pred cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 177 lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
+||.. .++.+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++||++ .
T Consensus 152 ~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 55544 5699999999999999999999999999999999999999999998873 5999999996 6
Q ss_pred HHHhhCCeEEEEeCCeEE-EEcCchhH
Q 005252 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (706)
Q Consensus 257 ~i~~~~D~vilL~~G~iv-~~G~~~~~ 282 (706)
.+.+.+|+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 78877654
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.7e-36 Score=307.84 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=161.0
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|+ +|+|. ++|... .+.|++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999885 89997 777532 13356678899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
+.+.+... ..+.++. .+.+.+.++|++..++.+ +.||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 223345567877777755 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHHh
Q 005252 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~~ 288 (706)
++..+.+.|.+..+ ++|+|++||++ .++.++||++++|++|++++.|+.+++..+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999997 567889999999999999999999988877654
No 324
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=343.14 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=176.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 126 (706)
..++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 358999998752 35999999999999999999999999999999999999885 89999999875321
Q ss_pred ---cCcEEEEecCC---CCCCCCCHHHHHHHHh-hccCC--CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 005252 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP--DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (706)
Q Consensus 127 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~-~l~~~--~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 196 (706)
.+.++|++|+. .+++.+|+.+|..+.. ..... ...+....++.++++++.+++. +..++.+ .+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCC
Confidence 23489999985 4688888887743321 00000 1112233456788899999995 4456644 5799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++ +++.++||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999996 678899999999999999987
Q ss_pred cCch
Q 005252 277 GETS 280 (706)
Q Consensus 277 G~~~ 280 (706)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7653
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=293.08 Aligned_cols=192 Identities=25% Similarity=0.429 Sum_probs=167.6
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~ 141 (706)
.+..||+|+|+.+++||..+|.||||||||||+|+++.+..|+ +|++++.|++... .+..++|+.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4577999999999999999999999999999999999999886 9999999998532 2457999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005252 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (706)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDE 220 (706)
. ||++|+.|..+++-... .+.+..+.|++++|.+. .++. +..||||||||++|+|-|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 99999999876653221 23556788999999753 3443 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|||+||+.++..|-++|.++. .+.+.++.+||++ .+..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999986 5789999999997 577899999999999876
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=315.26 Aligned_cols=227 Identities=27% Similarity=0.363 Sum_probs=196.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~---- 124 (706)
-|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.+.|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 489999999996533 5678999999999999999999999999999999999998652 245899999998731
Q ss_pred -----cCcCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 125 -----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
.+..+|+.++|++ .|.|-.|+..-+.-..++. ..+++++.++++.++|+.+|+.+-.... +.++++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1234799999997 5778889988888776554 4567888899999999999998754443 348999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||||||.||+||+.+|++||.||||++||..-+.+|+++|++|.+ .|..++++|||. .-+.+++|||++|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 999999999999999999999999999999999999999999976 599999999996 678899999999999999999
Q ss_pred cCchhHH
Q 005252 277 GETSAAF 283 (706)
Q Consensus 277 G~~~~~~ 283 (706)
|++++..
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9987654
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=343.83 Aligned_cols=203 Identities=24% Similarity=0.329 Sum_probs=173.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++||++.| +.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+ +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3467999999999999999999999999999999999999886 899999874 45
Q ss_pred EEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHH
Q 005252 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
++|++|++. +++.+||+|++.+... . . ..+++++++++.+|+. +..++.+ ..|||||||||+||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~----~-~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E----G-DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C----C-ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHH
Confidence 899999963 5667899999864210 1 1 1235678899999994 5666654 57999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~~~~~ 283 (706)
++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+ +++.++||++++|++|+++ +.|++++..
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35999999996 6788899999999999998 888876543
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7e-36 Score=344.04 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=173.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..++++||+++|. +.+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3689999999982 1467999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhc-c------------CCCCCCHH--------------------HHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMPWS--------------------EKRTLVERTIIE 176 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l-~------------~~~~~~~~--------------------~~~~~v~~~l~~ 176 (706)
++||+|++.+++.+||+||+.++... + ........ +...++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 00000000 012456677888
Q ss_pred cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 177 lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
+|+.. .++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4554 4579999999999999999999999999999999999999999999876 35999999996 5
Q ss_pred HHHhhCCeEEEEeCCeEE-EEcCchhHHH
Q 005252 257 EVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (706)
Q Consensus 257 ~i~~~~D~vilL~~G~iv-~~G~~~~~~~ 284 (706)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 788899999999999976 7788775443
No 329
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-35 Score=308.25 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=156.6
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCC
Q 005252 70 NVLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (706)
Q Consensus 70 ~iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lT 144 (706)
+.++|++++++ +||+++|+|||||||||||++|+|.++|. +|+|.++|. .++|++|+......+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCC
Confidence 35677777775 79999999999999999999999999886 899999984 5899999988777889
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005252 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (706)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsg 224 (706)
|+|++.+...... . .....+++++.++|.+..++.+ ..|||||||||+||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 1134677889999987777654 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE--EEcCchh
Q 005252 225 LDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA 281 (706)
Q Consensus 225 LD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv--~~G~~~~ 281 (706)
||+.++..+.+.|+++++ .|+|||++||++ .++..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999976 489999999996 5778899999999765433 3344444
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.9e-36 Score=341.60 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=172.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|..++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 359999999998 3456999999999999999999999999999999999976541 38999999975311
Q ss_pred --CcCcEEEEecCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChH
Q 005252 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~--~lTV~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGG 198 (706)
.++.++|++|++.++. ..|+++++.+.... ....... .+.+++++++++.+||.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999976543 35777776543211 1111111 233467889999999986 667654 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHh-hCCeEEEEeCCeEEEE
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~H~p~~~i~~-~~D~vilL~~G~iv~~ 276 (706)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 4799999996 56766 5899999999998865
Q ss_pred c
Q 005252 277 G 277 (706)
Q Consensus 277 G 277 (706)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-36 Score=304.33 Aligned_cols=190 Identities=29% Similarity=0.378 Sum_probs=166.3
Q ss_pred EEEEEeEEEEEEccC--Cc--cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC
Q 005252 51 RLTWKDLTVMVTLSN--GE--THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~ 126 (706)
.++++||++.+..+. +. ...+++||||++++||+++|+|+||||||||-++|.|+.+|. +|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhc
Confidence 589999999997542 12 247999999999999999999999999999999999999985 99999999874321
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
. +++..+++.++|+.+||.. .+++ ++++||||||||+.|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHHH
Confidence 1 3455678999999999864 3443 788999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||||+.+|+++++|||||.||...+.+++++|+++.+ .|.|.++++||. +.+..++|||.+|..|++|+.|+.++...
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999987 599999999995 57888999999999999999999987653
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-36 Score=302.22 Aligned_cols=217 Identities=27% Similarity=0.371 Sum_probs=184.5
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--- 124 (706)
....|+++|+++.+ ++|+||+|+|++|+|||-.+|+|||||||||||++++|...|. +|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 28 NEPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred CcceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 34569999999998 6789999999999999999999999999999999999998885 899999998631
Q ss_pred ---cCcCcEEEEecC--CCCCCCCCHHHHHHHHh--hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 125 ---LSFGTAAYVTQD--DNLIGTLTVRETISYSA--RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 125 ---~~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
..++.||||.-+ ..+.+..+|+|-+.-+. ..........++..+++..+++.+|+.+.+|+..+ .||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCH
Confidence 124679998654 34455678888875432 22222212345666789999999999999999776 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
||||||-|||||+++|.+||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999874 89999999996 78999999999999999999
Q ss_pred EcC
Q 005252 276 FGE 278 (706)
Q Consensus 276 ~G~ 278 (706)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 333
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-35 Score=373.27 Aligned_cols=237 Identities=24% Similarity=0.294 Sum_probs=187.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|++|.+||.++++.++.... . .+ ... .....++++|+++.++.+ .++++|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~-~----~~--------~~~-----~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA-Q----NP--------PLQ-----PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc-c----cC--------CcC-----CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 688999999999986654221 0 00 000 011259999999998521 236799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (706)
||.++|+||||||||||+++|.|.++|. +|.+. ..++.++||+|++.+++. ||||||.|+.. .
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------F 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCc------c
Confidence 9999999999999999999999999885 66553 123579999999999987 99999998742 1
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005252 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (706)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~ 234 (706)
++ ++.+++++..+ |.+..+|.||+. ...||||||||++||||++++|+|++||||||+||+.++.+++
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 22 23344444433 456678999984 5579999999999999999999999999999999999999998
Q ss_pred HH-HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 235 ~~-L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+. ++.. .+|+|+|++||+++ ....+|+|++|++|++++.|+.++..
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 65 4443 36899999999974 46889999999999999999988765
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=289.20 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=190.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecCc---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G-~~~~~--- 125 (706)
..|..+|||+++ +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+|. +|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 458999999999 5688999999999999999999999999999999999998885 89999999 44321
Q ss_pred ---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
.+..||--+|.|..|..+||+|||..+.+...+- .....+.+++++++|...||.+.+|...+ .||-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 1345788999999999999999999885432110 01123456789999999999999888766 4999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||++.|++.++++|++|++|||++|+-.+...+.-++|+.++. +++|+++-||. ..+.+++|+|.+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999986 58999999996 6889999999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 987664
No 335
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=319.07 Aligned_cols=248 Identities=27% Similarity=0.376 Sum_probs=199.3
Q ss_pred hhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeCC
Q 005252 3 DSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPG 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~G 82 (706)
++.-.++.+++++.+.+... +|..+..|- .....+.|.|+++.+. +.+++|+++|+.+++|
T Consensus 229 ~ltdme~mfdLl~~~~~v~d------~pda~~L~~---------~~~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g 289 (497)
T COG5265 229 ALTDMEKMFDLLDVEAEVSD------APDAPPLWP---------VRLGAVAFINVSFAYD----PRRPILNGISFTIPLG 289 (497)
T ss_pred hhhhHHHHHHhhccchhhcc------CCCCccccc---------cccceEEEEEEEeecc----ccchhhcCccccccCc
Confidence 44455666777766655432 222222221 1234589999999985 6789999999999999
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 157 (706)
+.+||+||||+||||++++|-+.++++ +|.|.+||+++.. -++.||.||||..||.+ |+..|+.|+..-
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~-- 363 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPD-- 363 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCcc--
Confidence 999999999999999999999999886 9999999997532 24679999999999988 999999987432
Q ss_pred CCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005252 158 PDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (706)
Q Consensus 158 ~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~ 232 (706)
.+.+++.+ .+.+.++ .+.+..|+.||+.+.+ |||||||||+|||+++++|+||++||.||+||+.+...
T Consensus 364 ---at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~ 437 (497)
T COG5265 364 ---ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437 (497)
T ss_pred ---ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHH
Confidence 23333332 3333443 3678899999986655 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 233 i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+...|++++ .|+|.+++.|..+. .--+|+|++|++|++++.|.-++++.
T Consensus 438 iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 438 IQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999987 58999999999753 45699999999999999999877654
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-35 Score=371.52 Aligned_cols=236 Identities=23% Similarity=0.291 Sum_probs=189.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|++|.+||.++++.++..+. . ..+. . . ....++++|+++.++.+ .++++|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~-~~~~---------~---~--~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P-NPPL---------E---P--GLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c-CCcc---------c---C--CCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 678999999999976544221 0 0000 0 0 01248999999998521 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (706)
||+++|+||||||||||+++|.|.+++. + |+|.+. +.++||+|++.+++. ||||||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999885 8 899863 468999999999987 999999987431
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005252 161 MPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i 233 (706)
++ ++.+++++..+| .+..+|.||+. ...||||||||++||||+.++|+|++||||||+||++++.++
T Consensus 706 -d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -DP----ERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -cH----HHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 12 334445554444 45678999974 457999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 234 ~~-~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
++ .++.+. +|+|+|++||++. ....+|+|++|++|++++.|+.++..
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 455543 5899999999973 57889999999999999999988765
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.8e-35 Score=346.31 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999873 2357999999999999999999999999999999999998775 89998864 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCChHHHHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg----~~~~~~LSGGerqRv~Ia 206 (706)
+||+|++.+++. |++||+.++........ ....++.+.++++.++|.+..++..| ......||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999988642210000 00112457788999999765444321 013467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|+|+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999974 358899999996
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.1e-35 Score=337.04 Aligned_cols=203 Identities=23% Similarity=0.309 Sum_probs=169.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++||++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999998 3467999999999999999999999999999999999999885 899999542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHH
Q 005252 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+||++|+. .+++.+||+||+.+...... .... ...++++++.+|+.+ ..++.+ .+|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 78889999999998643221 1111 123457899999964 456654 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC-CeEE-EEcCch
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~-G~iv-~~G~~~ 280 (706)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++.++||++++|++ |++. +.|+.+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999873 4 899999996 578899999999985 7876 455543
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.6e-35 Score=336.31 Aligned_cols=199 Identities=24% Similarity=0.292 Sum_probs=171.9
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..++++|+++.+. +. .|+++|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 4699999999882 22 499999999999999999999999999999999999886 8999986 14
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
++|++|+..+++.+||+|++.+.... ... ...++++++.++|.+..|+.+ ..|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHH
Confidence 89999998888889999999875321 111 134678999999987777755 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||+ .++..++|++++|+ |++...|...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999999987 489999999996 57888999999996 5887777643
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.7e-35 Score=335.41 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=168.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..++++|+++.+ +++.+|+|+|+++++|++++|+|||||||||||++|+|..+|. +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3467999999999999999999999999999999999999885 899999542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHH
Q 005252 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
++|++|+. .+++.+||.|++.+...... .... ...++++++.+||.+ ..++.+ ..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 47888999999998643211 1111 123557899999964 456654 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC-CeEE-EEcCc
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGET 279 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~-G~iv-~~G~~ 279 (706)
+|+.+|++|||||||+|||+.+...+.+.|+++. | |||++||++ ..+.++||++++|++ |+++ +.|+.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999883 3 899999996 678889999999986 5776 45554
No 341
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=298.93 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=180.1
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----cCcEEEEe-cCCCCCCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~-Q~~~l~~~l 143 (706)
..+.+|+||+|++|++++++|||||||||+||+|+|++.|. +|.|.+||.....+ -+.+++|+ |...+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45899999999999999999999999999999999999986 99999999864221 14466654 556677777
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005252 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (706)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs 223 (706)
.+.|.+....... .++.++.+++.+.+.+.++|+...+.++ +.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 8888887765443 4677888899999999999988777654 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHH
Q 005252 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 287 (706)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~ 287 (706)
|||..++..+.+.|++..+ ++.||+.+||+. +++.++||||++++.|+++|.|+.++..+-|.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999976 689999999996 68999999999999999999999998877553
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.4e-35 Score=303.53 Aligned_cols=198 Identities=25% Similarity=0.319 Sum_probs=163.0
Q ss_pred eEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecC
Q 005252 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (706)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~~G~~~~ 124 (706)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|. ++|++..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 4566662 2236999999 59999999999999999999999999999886 89996 7787632
Q ss_pred c-----C--cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 125 ~-----~--~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
. . ...++|++|+..+++. ++.+++.+... ....++.+.++++.+||.+..++.+ ..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNI-----DQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1 1 1237899999887775 88888876421 2233466789999999987766644 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++.+.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999988889999999996 56778999999995 6565544
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.5e-35 Score=283.96 Aligned_cols=216 Identities=26% Similarity=0.396 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
++.+|+++.+.......+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.++ +|+|.+||.++.. +
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4566777777655556789999999999999999999999999999999999999986 9999999998542 1
Q ss_pred cCcEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCC---HHHHHHHHHHHHHH--cCCCccccccccCcccCCCChHH
Q 005252 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMP---WSEKRTLVERTIIE--MGLQDCADTVIGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~---~~~~~~~v~~~l~~--lgL~~~~d~~vg~~~~~~LSGGe 199 (706)
...++-|+||+ ..++.|||.||+..+....-..... ....++...+.+.. +||++..++++|- |||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchH
Confidence 23567899997 4689999999999875431111122 12333444455555 4667888888873 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||-+++++|-++.|+||+|||-|++|||.++..|++.-.++.+ .+.|.+++||.. .+...+-+|+++|++|+||..
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999999875 578999999996 678999999999999999975
No 344
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-34 Score=361.97 Aligned_cols=243 Identities=22% Similarity=0.319 Sum_probs=188.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|.+||.++++.++...... . .... .......++++|+++.+.. ..+++|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~-------~----~~~~----~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSI-------E----RRTI----KPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccc-------c----cccc----CCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 57899999999997665422100 0 0000 0001125999999999842 235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (706)
||+++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999885 89999987 4899999998876 4999999986321
Q ss_pred CHHHHHHHHH--HHHHHcCC-CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005252 162 PWSEKRTLVE--RTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (706)
Q Consensus 162 ~~~~~~~~v~--~~l~~lgL-~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 238 (706)
+.++.++.++ .+.+.+++ .+..+|.+|+ ....||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1222111111 12233332 3455788887 467899999999999999999999999999999999999999999997
Q ss_pred HHH--hCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 239 ~l~--~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+.. .+|+|+|++||++. . ...+|+|++|++|++++.|+.++..
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 542 35799999999974 3 4569999999999999999988765
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.8e-34 Score=274.04 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+ ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 46889998872 346999999999999999999999999999999999999885 999999985 4689
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
|++| ||+||+||++|||+|+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++ +++.+++|++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999996 57788999999999985
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=335.03 Aligned_cols=202 Identities=28% Similarity=0.366 Sum_probs=170.8
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++||++.| +++.+|+|+|++|++|++++|+|||||||||||++|+|..+|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 369999999998 3467999999999999999999999999999999999999885 899999742 25
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005252 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 130 ~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
+||++|+. .+.+..|+.+++.. .. .......+.++++.+++.. ..++.+ ..|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 35566788777632 11 1122456789999999963 566655 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~~~~~ 283 (706)
++|+.+|++|||||||+|||..+...+.+.|+++ .| |||++|||+ ..+.++||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 999999996 6788999999999999997 889887653
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-34 Score=281.03 Aligned_cols=156 Identities=28% Similarity=0.420 Sum_probs=137.1
Q ss_pred EeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEe
Q 005252 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (706)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~ 134 (706)
.||++.+ +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5778877 346789885 899999999999999999999999999999886 8999999853 68888
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC
Q 005252 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (706)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~ 214 (706)
|+.. ||||||||++|||+|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE--cCchhHH
Q 005252 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSAAF 283 (706)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~--G~~~~~~ 283 (706)
+++|||||+|||+.++..+.+.|+++++++ .|||++||++ .++.+++|++++|+++-.++. |++..+.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999999998765 9999999996 567789999999998877655 6665443
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=267.43 Aligned_cols=190 Identities=26% Similarity=0.374 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~ 127 (706)
.++.+|++... ++..+|.|+|++|.+||++.|||||||||||||..+.|.+.+.-..+|++++|+++.+ ...
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47789998665 5678999999999999999999999999999999999999887778999999998754 235
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|..+||+.+||+++|.+||.|+. |....-..+++.++..+++.||....++ .+..||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 78999999999999999999999874 4444455677889999999999987776 45689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCCC
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQP 254 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~~H~p 254 (706)
+|+..|+.++||||+|.||..-+.+..+..-. ++..|..+|.+|||.
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999999999999998754 445799999999994
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-34 Score=331.12 Aligned_cols=206 Identities=24% Similarity=0.381 Sum_probs=164.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
|+++||++++ +.+.+|+||||+|++|+++||+||||||||||||+|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 4577999999999999999999999999999999999998886 899999874 2478
Q ss_pred EEecCCCCCCCCCHHHHHHHHhh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 005252 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~-----------------------l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~ 186 (706)
|++|+...+ ..|+.+.+.-... +.. .......+.+.+++++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 999865333 2466554431100 000 00000112345788999999996 466776
Q ss_pred ccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE
Q 005252 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 187 vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi 266 (706)
++ .|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||+||||+ ..+.++||+++
T Consensus 147 ~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 VS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred hh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 54 69999999999999999999999999999999999999999998875 46999999995 67889999999
Q ss_pred EEeCCeEE-EEcCchh
Q 005252 267 LLSGGKTV-YFGETSA 281 (706)
Q Consensus 267 lL~~G~iv-~~G~~~~ 281 (706)
+|++|+++ |.|+.+.
T Consensus 218 ~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 218 HIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEeCCEEEEecCCHHH
Confidence 99999996 5676543
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.9e-34 Score=331.28 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=170.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++||++.+ +++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----cE
Confidence 469999999998 3467999999999999999999999999999999999999885 899998 432 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHHH
Q 005252 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 130 ~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
++|++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 89999985 5888999999998753211 011 1234577889999985 4566655 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe-CCeEEE-EcCchh
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~-~G~iv~-~G~~~~ 281 (706)
+|+.+|++|||||||+|||..+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 45999999995 67888999999998 799864 555443
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-33 Score=280.59 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=190.9
Q ss_pred EEEEEeEEEEEEcc-------------------CCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 005252 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (706)
Q Consensus 51 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 111 (706)
.++++||++.+... +.....+|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 46778888776531 123467999999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005252 112 LSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (706)
Q Consensus 112 ~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (706)
+|+|.++|+-.... .=.-.+.|.+|.+||+.+-..+. .+++++.+++++++++--+|.+..|.++
T Consensus 81 -~G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 -SGKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -CceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999999743211 01123457899999999987653 5678999999999999999999999866
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
+..|.|++-|++.|.+.-.+|++|++||-.+-.|+.=+++..+.++++.++++|+|++||++ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 56999999999999999999999999999999999999999999999988889999999996 6799999999999999
Q ss_pred eEEEEcCchhHHHHHHh
Q 005252 272 KTVYFGETSAAFEFFAQ 288 (706)
Q Consensus 272 ~iv~~G~~~~~~~~f~~ 288 (706)
++.+.|+++++.++|..
T Consensus 224 ~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 224 QIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999999988765
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-33 Score=278.35 Aligned_cols=158 Identities=28% Similarity=0.346 Sum_probs=132.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
..+.+|+|+|+++++|++++|+||||||||||||+|.+ .+|+|.++|......+..++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH-----------
Confidence 34678999999999999999999999999999999953 279999998743222334778776
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTS 223 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~--p~llllDEPTs 223 (706)
.+.++.++|.. ..+. .++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 23567778864 3455 3457999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|||+.++..+.+.|++++++|+|||++||++. ++ +.+|++++|.+|+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 99999999999999999878999999999974 44 78999999966544
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.5e-33 Score=326.69 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=166.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++|+++.|. +.+.+|+|+||++++|++++|+|||||||||||++|+|.++|. +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999883 2346999999999999999999999999999999999999885 899998753 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
++|++|+. ...+++.++.........+. .. .+.+.++++.+|+.+ ..++. +..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHH
Confidence 89999985 34556666644321111111 11 245788999999973 45554 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~~~~~ 283 (706)
|+.+|++|||||||+|||+.+...+++.|++. +| |||++|||+ ..+..+||++++|.+|+++ +.|+.++..
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999999998888765 34 999999996 5788899999999999998 778766543
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.8e-33 Score=325.12 Aligned_cols=205 Identities=23% Similarity=0.327 Sum_probs=163.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++++ +.+.+|+||||++++|++++|+|||||||||||++|+|..+|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 48999999999 3467999999999999999999999999999999999998886 899999873 136
Q ss_pred EEEecCCCCCCCCCHHHHHHHHh------------------------------hcc--CCCCCCHHHHHHHHHHHHHHcC
Q 005252 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLR--LPDKMPWSEKRTLVERTIIEMG 178 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~------------------------------~l~--~~~~~~~~~~~~~v~~~l~~lg 178 (706)
+|++|++......+|.+++..+. .+. .. .....+.+.++.++++.+|
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCC
Confidence 78888654333346666542110 000 00 0001123457889999999
Q ss_pred CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH
Q 005252 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (706)
Q Consensus 179 L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i 258 (706)
+.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++. .|||++|||+ ..+
T Consensus 148 l~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 148 LDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 963 444 45799999999999999999999999999999999999999999998872 5999999996 578
Q ss_pred HhhCCeEEEEeCCeEE-EEcCchh
Q 005252 259 FELFDRLYLLSGGKTV-YFGETSA 281 (706)
Q Consensus 259 ~~~~D~vilL~~G~iv-~~G~~~~ 281 (706)
.+.||+|+.|++|+++ |.|+.++
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHH
Confidence 8899999999999997 5576654
No 355
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=339.30 Aligned_cols=223 Identities=27% Similarity=0.442 Sum_probs=202.4
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..+..+||++.+.. .+.+.+++|+.+++||+.+++|+|||||||++|+|.|..+|. +|++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~----~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG----KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecc----hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 46888999998842 112999999999999999999999999999999999999886 9999999987532
Q ss_pred --CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 126 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
.++.+||+||+|.+++.+|.||++.+.++++ ++++.+.++.++..++.+||.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 2466999999999999999999999999987 56677778889999999999999999876 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
++|.||+.+|++++|||||+|+||.+++.+++++++++++|+.||+|||.. +|...+|||+.+|.+|++...|++++..
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999999999999999999999999999999999888999999995 7899999999999999999999999998
Q ss_pred HHHHh
Q 005252 284 EFFAQ 288 (706)
Q Consensus 284 ~~f~~ 288 (706)
..|..
T Consensus 787 srfG~ 791 (885)
T KOG0059|consen 787 SRYGS 791 (885)
T ss_pred hhcCC
Confidence 87754
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.7e-33 Score=348.61 Aligned_cols=191 Identities=26% Similarity=0.366 Sum_probs=158.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
+++|+|+|+++++|++++|+|||||||||||++|+|..++. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 56999999999999999999999999999999999999885 89999987 38999999999886 99999
Q ss_pred HHHHhhccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005252 149 ISYSARLRLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs 223 (706)
+.|+... ..+..++ ..++.++.+ .+..+|.+|+ ....|||||||||+||||++.+|+++|||||||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987421 1111111 112222222 3344677876 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 224 GLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 224 gLD~~~~~~i~~~-L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+||+.++..+.+. ++++. +|+|+|++||++. . ...+|+|++|++|+++..|+.++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~-~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-H-LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-H-HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999985 66664 4899999999974 3 4569999999999999999988765
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-33 Score=267.00 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEEccC----CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--
Q 005252 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-- 124 (706)
.|+++||++++.... .....+.+.|||+++.|+.+||+|.||||||||.|+|+|..+|. +|+|++||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCcccccc
Confidence 377889998875431 23456899999999999999999999999999999999999985 999999998743
Q ss_pred ---cCcCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChH
Q 005252 125 ---LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 125 ---~~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGG 198 (706)
.+.+.+-.++||+. +.|.+.+.+-|....+ +...+..+++.+++-+.|+.+||- +.++- +++-||-|
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~ 153 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LNTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPG 153 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhh--hcccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCch
Confidence 23467899999974 6677777777776544 445677888889999999999984 33443 56789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||++||||+.+|+|++.||...+||...+.+++++..+|.+ .|.+-|.++.+. .-+..++|+|++|++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 99999999999999999999999999999999999999999986 599999999985 5788899999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
++.++.
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 988764
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-32 Score=263.02 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.2
Q ss_pred EEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcC
Q 005252 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (706)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (706)
++|+++.+. .+.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|.++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888872 347999999999999999999999999999999999999875 8999999986432 124
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
++.+|++++|||||+|||..++..+.+.|+++.++++|+++++|++ +++...+|+++++++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999987789999999996 56778899999999875
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-33 Score=266.17 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCc---
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--- 127 (706)
.++.+||+++- +.+.++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|.++|.++...+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35667887765 5678999999999999999999999999999999999999997 999999998754322
Q ss_pred -CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 128 -~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
+.+-|+-..+.+-+.+||.|||.|-.++.-. . ....+.+.++.+||....|.+++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 4467888889999999999999998765422 1 12557889999999999999876 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
|-++..+++.|||||+++||......+-..+..-+++|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999888889999999999863
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=260.52 Aligned_cols=215 Identities=28% Similarity=0.355 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecCc--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~-- 125 (706)
.|++++||+.| +...-.+||||++.|||+++|+|+|||||||||++|++++.|+ .|+|.+.-. +.+.
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 58889999888 4455789999999999999999999999999999999999996 899998643 2211
Q ss_pred ---------CcCcEEEEecCCC--CCCC----CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005252 126 ---------SFGTAAYVTQDDN--LIGT----LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (706)
Q Consensus 126 ---------~~~~~~yv~Q~~~--l~~~----lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 190 (706)
.+..-|+|.|++. +-.. -.|.|-+.-.-. ...-..++...++++++.++.. .+. .
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~---RiD-D 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLD---RID-D 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCcc---ccc-C
Confidence 1124689999963 2222 233343321110 1123456678889999888632 232 2
Q ss_pred ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
.++..|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.+.. -|..+|++|||. .-+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 6789999999999999999999999999999999999999999999999986 499999999995 44556799999999
Q ss_pred CCeEEEEcCchhHHH
Q 005252 270 GGKTVYFGETSAAFE 284 (706)
Q Consensus 270 ~G~iv~~G~~~~~~~ 284 (706)
+|++++.|-.+.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998876653
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-32 Score=316.72 Aligned_cols=187 Identities=28% Similarity=0.385 Sum_probs=155.6
Q ss_pred EEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCc
Q 005252 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL 125 (706)
Q Consensus 57 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~~G~~~~~ 125 (706)
+++.| ++...+|++++ .+++||+++|+||||||||||||+|+|.++|+ +|+|. ++|++...
T Consensus 79 ~~~~y----g~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRY----GVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEe----cCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHH
Confidence 45555 23346899999 99999999999999999999999999999986 89997 89976321
Q ss_pred -------CcCcEEEEecC----CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005252 126 -------SFGTAAYVTQD----DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (706)
Q Consensus 126 -------~~~~~~yv~Q~----~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (706)
....+++.+|. +.++.. ||+|++... +.+.+++++++.++|.+..|+.++ +
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~-tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~ 212 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKG-KVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----E 212 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcc-hHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 11235555554 333333 999998631 123568899999999888888664 6
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|++|
T Consensus 213 LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999988 99999999996 6788999999999864
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=2.3e-31 Score=320.99 Aligned_cols=239 Identities=25% Similarity=0.318 Sum_probs=192.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|..+.+|+.+.+.++.....-.. + . ........++++|.+++-+. ....+.|+|||+++++
T Consensus 485 qa~VS~~Ri~~fl~~~e~~~~~~~-------~------~---~~~~~~~~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSEELDPDSVE-------R------S---PDEAGENAIEIKNGSFSWDS--ESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCcccCccccc-------c------C---CCCCCCceEEEeeeeEecCC--CCCcccccceeEEecC
Confidence 578899999999976555332110 0 0 01112345889999988653 1334589999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (706)
|+++||+|+-|||||+||.+|.|-++. .+|+|.++|. ++||+|++.+++. ||||||.|+...
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~------ 608 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPY------ 608 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCccc------
Confidence 999999999999999999999999876 4999999874 8999999999988 999999998543
Q ss_pred CHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005252 162 PWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (706)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~ 234 (706)
+ +++-+++++...|+ ++-.|.||+. .-.||||||||+++|||+-+|++|++||.|.|++|++...++.
T Consensus 609 d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr-GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 609 D----EERYDKVIKACALKKDLEILPFGDLTEIGER-GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred c----HHHHHHHHHHccCHhHHhhcCCCCcceecCC-ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 1 24455555555553 4456888874 4469999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 235 ~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..-+-.-+++|+|++|||. +..+.+|.|++|++|++...|+.+|..
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 76554334689999999984 578999999999999999999999877
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=8e-32 Score=304.06 Aligned_cols=206 Identities=30% Similarity=0.403 Sum_probs=171.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++|+++.+ +.+.+|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. -.+
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58899999999 5789999999999999999999999999999999999999886 899987542 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (706)
+|++|++.+.+..||.+.+.-+..-. .+.. +..-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887653210 0000 0001123567788888888776
Q ss_pred cccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCC
Q 005252 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (706)
Q Consensus 184 d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D 263 (706)
++.++ +||||||.||+||++|+.+|++|+|||||++||..+...+-+.|++. +| |+|+|||| +..+-+.|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 77665 69999999999999999999999999999999999999999999754 56 99999999 788889999
Q ss_pred eEEEEeCCeEE-EEcCch
Q 005252 264 RLYLLSGGKTV-YFGETS 280 (706)
Q Consensus 264 ~vilL~~G~iv-~~G~~~ 280 (706)
+|+.++.|++. |.|.-+
T Consensus 219 ~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 219 HILELDRGKLTPYKGNYS 236 (530)
T ss_pred heEEecCCceeEecCCHH
Confidence 99999999875 555443
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=4.7e-31 Score=318.32 Aligned_cols=247 Identities=21% Similarity=0.307 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeCCe
Q 005252 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (706)
+.|-+|+.|+.+.+++ ......+.. ++..| +....++|+|++++|.. +...||||||++|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~--pp~~W----------P~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESR--PPPSW----------PSKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCC--CCCCC----------CCCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 5678999999987766 111110000 11111 23446999999999953 45689999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (706)
.++|+|..|||||||+++|-++..+. +|+|.+||.++.. -+++++.+||||.+|.+ |||.||.=..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~----- 1238 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD----- 1238 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----
Confidence 99999999999999999999999875 8999999998532 24679999999999999 9999985321
Q ss_pred CCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 159 DKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
..++ +.+.+.|+..+| ....|+.|.+ ...++|-||||.+++||||+++.+||+|||+|++.|+++-.
T Consensus 1239 -e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1239 -EYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred -ccCH----HHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 1122 334444444443 3456777765 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.|-++|++-= +++|||.+.|+.. .+ --+|||++|++|+++++|+|.++++
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~-TV-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLN-TV-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccc-hh-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998753 4699999999975 34 4589999999999999999998775
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=3.4e-31 Score=333.60 Aligned_cols=193 Identities=26% Similarity=0.365 Sum_probs=154.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
++.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999885 8999863 45999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005252 148 TISYSARLRLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPT 222 (706)
|+.|+... ..+... ...++.++.+ .+..++.+|+ ....|||||||||+|||||+.+|++++|||||
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99985321 111111 1223334443 1223556665 46689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
++||+.++..+++.+.....+|+|+|++||++. . .+.+|+|++|++|++++.|+.++..
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999998754322235899999999974 3 4789999999999999999987754
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=7.8e-31 Score=307.85 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=150.6
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--- 124 (706)
....|+++|++++| +.+.+|+|+|++|.+|+.+||+|||||||||||++|+|+...+.+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 45569999999999 3466999999999999999999999999999999999974111122566654332100
Q ss_pred --c-------C-------cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHHHH
Q 005252 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (706)
Q Consensus 125 --~-------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-------------------~~~~~ 169 (706)
. . ...++|++|++.+... ++.++.... . ....+.+ ...++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-N---KDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-c---ccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0012333333221110 111110000 0 0001111 22345
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 005252 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (706)
Q Consensus 170 v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI 248 (706)
+.+++..+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 66677777775 3345544 579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCchHHHhhCCeEEEEeCCeEE-EEcCchh
Q 005252 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (706)
Q Consensus 249 ~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~~~ 281 (706)
++||+. ..+.+.||++++|++|+++ |.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999995 6788899999999999996 6776553
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.5e-30 Score=263.20 Aligned_cols=190 Identities=25% Similarity=0.288 Sum_probs=135.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--E-e--cCcCcCc
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--H-K--TKLSFGT 129 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG~~~~~~~~~G~I~~~-----------G--~-~--~~~~~~~ 129 (706)
....+|+|||+++++||+++|+||||||||||+ ..+.. +|++.+. | . + .......
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 456799999999999999999999999999996 44431 1221110 0 0 0 0011112
Q ss_pred EEEEecCCC--CCCCCCHH---HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHH
Q 005252 130 AAYVTQDDN--LIGTLTVR---ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 130 ~~yv~Q~~~--l~~~lTV~---E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+..|++. +.+..+|. |...+...+. ..+...++ .+.++.++|.+ ..+. ++..||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 334444432 23444544 3222221111 11122233 56789999975 3555 4467999999999
Q ss_pred HHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEE
Q 005252 204 SIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVY 275 (706)
Q Consensus 204 ~Ia~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~ 275 (706)
+||++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||++. ++ ++||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 599999999999999999999999999888999999999974 44 799999999 9999998
Q ss_pred Ec
Q 005252 276 FG 277 (706)
Q Consensus 276 ~G 277 (706)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=244.97 Aligned_cols=208 Identities=27% Similarity=0.377 Sum_probs=171.8
Q ss_pred eEEEEEeEEEEEEccC--CccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--cC-
Q 005252 50 ARLTWKDLTVMVTLSN--GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK- 124 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~--~~- 124 (706)
..|..+|+++++.... +-.-++|+|+||+++.||++++=|||||||||||++|-|-+.|+ +|+|++.-.. .+
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhh
Confidence 3588999998886542 33457999999999999999999999999999999999999886 9999985321 11
Q ss_pred ----------cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005252 125 ----------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (706)
Q Consensus 125 ----------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (706)
.+++.+|||.|--...|..+..|.++-.+.- ...+.+..++++.+++.++++.+..=.. .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1345789999988778877766666554322 3566778888999999999997543322 4567
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH-hhCCeEEEEe
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF-ELFDRLYLLS 269 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~-~~~D~vilL~ 269 (706)
.||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+.+|..+|=+-|| +++. ..+||++-+.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD--eevre~vadR~~~~~ 226 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD--EEVREAVADRLLDVS 226 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc--HHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999999999998899999999999 3444 5799999875
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.3e-30 Score=241.88 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
|+|||+++++|++++|+|+||||||||+++|+|..++. +|+|.+||++... .++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999875 9999999998643 236799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs 223 (706)
|| ...++++++++.+++.+..++.++. ....||||||||++||++|+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 2235688999999998888888865 447899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=7.3e-29 Score=258.14 Aligned_cols=195 Identities=27% Similarity=0.341 Sum_probs=151.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--CCc------eeEEEECCEecCcCc---
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRLA-----SN--AFL------SGTILLNGHKTKLSF--- 127 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-----G~~~-----~~--~~~------~G~I~~~G~~~~~~~--- 127 (706)
..-|+|||..|+.|++++|.|+||||||||++.+. ..+. +. ... .--|.+|..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 1110 10 001 123667765531100
Q ss_pred ------------------------C----cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 005252 128 ------------------------G----TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (706)
Q Consensus 128 ------------------------~----~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 179 (706)
+ .+.|..++......+||.|++.|...+. ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 1345556655667899999999876532 12456789999999
Q ss_pred Cc-cccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 180 ~~-~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
.. ..+.. ++.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 34553 457999999999999999996 7999999999999999999999999999888999999999973
Q ss_pred hHHHhhCCeEEEE------eCCeEEEEcCc
Q 005252 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (706)
Q Consensus 256 ~~i~~~~D~vilL------~~G~iv~~G~~ 279 (706)
. .+.+|+++.| ++|++++.|++
T Consensus 234 -~-i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -V-IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -H-HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 4689999999 89999999874
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=268.93 Aligned_cols=203 Identities=27% Similarity=0.337 Sum_probs=167.7
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCc
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 127 (706)
....++++|+++.+. +.+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 356799999999984 3378999999999999999999999999999999999998875 899987421
Q ss_pred CcEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHH
Q 005252 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
-.+||..|+. .+.+..|+.|++.-... .. .+..+...|..+++.. ...++| +.||||||.||.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~-----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFP----DG-----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCc----cc-----cHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHH
Confidence 3589999995 45577899999865421 11 1466888999999964 344544 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE-cCchhH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAA 282 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~-G~~~~~ 282 (706)
|+.++.+|.+|||||||+.||..+...+.+.|... .-|||+|||| ...+-+.+++++.+.+ ++..+ |..++.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999998776 3599999999 4788899999999998 55444 665543
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=3.3e-29 Score=237.46 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.+..+|+++.- =|-.+|+++..||++-++|||||||||||-.++|+.+. +|+|.++|.+....
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 45667776533 26789999999999999999999999999999999765 89999999985321
Q ss_pred -cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 127 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.+.-+|..|+..-...|.|...+... . +.++....++++...++|.+...+.+ ..|||||-|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEE
Confidence 23457998887666678899988753 2 34556677888889999987776644 5799999999999
Q ss_pred HHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 206 a~aL~~-----~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|...+. || ++|++|||.++||......+-..|.+++..|.+||++.||.+ ...+.+|++.+|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecc
Confidence 987764 55 799999999999999999999999999999999999999974 6789999999999999999999
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
.+|++
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 98876
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=3.7e-28 Score=243.79 Aligned_cols=164 Identities=27% Similarity=0.365 Sum_probs=129.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEecCc--CcCcEEEEecCCCCCCCCC
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~------~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 144 (706)
+++++++++| +++|+||||||||||+++|+|+..+. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999987543 1224578888875322 235799999998765
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeC
Q 005252 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (706)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~----~~p~llllDE 220 (706)
|. .. ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 02356666665 334444 34579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
||+|||+.....+.+.|+++++ +.|||++||++. . .+.+|+++.+.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 9999999999999999999965 689999999973 3 57899999996
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.9e-27 Score=259.43 Aligned_cols=214 Identities=25% Similarity=0.421 Sum_probs=179.0
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC--
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-- 126 (706)
...++++|++.. ..++|+||++++||+++|.|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 445778887632 2579999999999999999999999999999999976654 89999999985432
Q ss_pred ----cCcEEEEecC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 005252 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (706)
Q Consensus 127 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LS 196 (706)
...++|||.| +-++..++|++|+.++...+.. . -.+.+..++.+++..+.+++.- ..+..+ ..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCC
Confidence 2358999988 4688999999999988322211 1 2456666778999999999853 344544 4699
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
||.+|+|.||+.|..+|++|||||||.|.|.-+..+|.++|++++++|++||++|.+. +|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 789999999999999999875
Q ss_pred cCch
Q 005252 277 GETS 280 (706)
Q Consensus 277 G~~~ 280 (706)
=+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4443
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=256.20 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=160.2
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...++++||++.-+ ..+..|++.|+.+++||-+.|.||||||||||+|+|+|+-+.+ +|+|..- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999998764 3458999999999999999999999999999999999998765 7877542 224
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCChHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg-~~~~~~LSGGerqRv~Ia~ 207 (706)
.+-|+||.|.+... |.||-+.|..... ..+ ++.+.++|.++||.+..++.=+ +.--+.||+||||||++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999999887 9999998753221 122 3557889999999877655322 1234579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
.|+++|++++|||.||+||..++..+.+.|++-. .+.|||-+.|+|. +..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999998743 3699999999974 567777766554
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.1e-26 Score=238.24 Aligned_cols=183 Identities=20% Similarity=0.338 Sum_probs=129.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC----------------CCCCCcee--------EEEECCEec
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL----------------ASNAFLSG--------TILLNGHKT 123 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~----------------~~~~~~~G--------~I~~~G~~~ 123 (706)
++.++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456788887 7899999999999999999998432 222 33 555555321
Q ss_pred ----C-c---CcCcEEEEecCCCCCC-CCCHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 005252 124 ----K-L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (706)
Q Consensus 124 ----~-~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (706)
. . ..+.++|++|+..+++ ..|..|...+............ .....++.++ +++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccccccc-----ccc
Confidence 0 0 1245788888877776 4677776666554332211000 0001122222 344433344 345
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+++|++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888884 5789999999996
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.4e-26 Score=240.93 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=137.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-ec-------CcCcCcEEEEecCC---------CCCCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-------KLSFGTAAYVTQDD---------NLIGTLT 144 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 144 (706)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. ......+.+++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998763 2467777665 21 11234688999985 3456789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCChHHHHHHHHHHHH
Q 005252 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 145 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~---------------~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
|.+++.+....+.... .++...+++.+.++.+||...... ..-+..+..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988866532211000 122344778899999998611000 011224568999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 210 ~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+ .+|+++++||||+|||+.+...+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999994 6788999999875
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.7e-27 Score=240.18 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=139.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-cCcCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGT 129 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-~~~~~ 129 (706)
.|+++|.. .| +.+.+|+++++ ++++|+||||||||||+++|.-. +|.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 34 35678999987 89999999999999999999722 222211 11245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
++|++|+..+++.+|++|++.+....... .....++... ...++++.++|.+..++.+ ..+|+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHH
Confidence 88999998888889999887765432100 0111111110 1245566777877777754 4699999999
Q ss_pred HHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 203 VSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 203 v~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
++||++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999974 5799999999999999999999999999864 67889999995 67899999999963
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.1e-26 Score=241.86 Aligned_cols=234 Identities=24% Similarity=0.260 Sum_probs=177.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|.+|.++|.++...++..+ +..| ++.+ .--.++++|+.|.|.. ..-=+..||++|+.
T Consensus 291 ~AqvA~~kiakle~~~~~a~-----~~~~--------q~~p-----~~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD-----FPRP--------QAFP-----DWKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc-----CCCC--------CcCC-----cccceeeeeeeeccCc----ccceecceeeEEec
Confidence 58899999999886444422 1111 2111 1235899999998842 22457899999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++-|+|.||||||||++.|.|++.|+ +|+|++||++++.. ++-.+-|+-|-++|+.+=
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986432 233455666666665421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 236 (706)
-++.. ...+.++..++++.|.+...-.=|+-..-.||.|||||+++-.||+-+.+|+++||=.+.-||.-++.+.+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 112457788888888765433333334457999999999999999999999999999999999999999877
Q ss_pred HH-HHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 237 LR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 237 L~-~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+- .++++|+||+.+|||- .-|..+||++.+++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 64 5567899999999995 458999999999999998754
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=6.6e-25 Score=271.74 Aligned_cols=137 Identities=23% Similarity=0.304 Sum_probs=112.7
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHh---hCCC
Q 005252 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (706)
Q Consensus 139 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~---~~p~ 214 (706)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 55678999999887542211112234455566 58899999765 56644 579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe------CCeEEEEcCchhHH
Q 005252 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (706)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~------~G~iv~~G~~~~~~ 283 (706)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.+|++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999998899999999997 455 8999999996 79999999998765
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=8.1e-26 Score=229.63 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=131.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-e---cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-K---TKL 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~-~---~~~ 125 (706)
.|+++|+. .|. .. ++++|... +|++++|+|||||||||||++|++.+... ..+....+.. . ...
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 57777776 441 11 55666543 58999999999999999999999644211 1233332211 0 112
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
....+++++|++.... ++.+.. .++.++..+.+ .+...++.+..++ .+..||||||||++|
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~l 134 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLASL 134 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHHH
Confidence 2346889998863211 121111 22232222211 1333334444444 445799999999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 206 ALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 206 a~aL~~----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|++|+. +|++++|||||++||+.+...+.+.|++++++|.|||++||++ +.+...+|+++++++|.+
T Consensus 135 a~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 135 SLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCCC
Confidence 999985 5789999999999999999999999999987799999999997 567888999999998753
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=235.50 Aligned_cols=222 Identities=27% Similarity=0.375 Sum_probs=188.3
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-C--
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-K-- 124 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-~-- 124 (706)
....|+++||++.-. .....+++|||++++||+++|.|-+|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 456799999998642 2356899999999999999999999999999999999998775 69999999985 1
Q ss_pred -c---CcCcEEEEecCC---CCCCCCCHHHHHHHHhhcc----CCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 005252 125 -L---SFGTAAYVTQDD---NLIGTLTVRETISYSARLR----LPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (706)
Q Consensus 125 -~---~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~ 192 (706)
. ....++|||.|. .+.+.+|+.||+.+...-+ ...-....+.++.+.+++++++.... .+. ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 1 124589999985 4678899999998875421 11124567788899999999998632 233 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
+.||||.+||+-+||+|.++|++|++.+||.|||..+...+.+.|.+++++|+.|++++.+. +|+++++|||.+|.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCc
Confidence 67999999999999999999999999999999999999999999999999999999999995 89999999999999999
Q ss_pred EEEEcCchhH
Q 005252 273 TVYFGETSAA 282 (706)
Q Consensus 273 iv~~G~~~~~ 282 (706)
++...+++++
T Consensus 481 i~~~~~~~~~ 490 (501)
T COG3845 481 IVGIVPPEEA 490 (501)
T ss_pred eecccccccC
Confidence 9988877653
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=3.7e-25 Score=223.29 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=124.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEec--CcCcCcEEEEecCC-----CCCCC
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDD-----NLIGT 142 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----G~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~-----~l~~~ 142 (706)
..++++.+| +++|+|||||||||||++|. |...++ .|.+..+.+.. ......+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 45554221111 11234688999987 44455
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH------HHHHHHHhhCCCEE
Q 005252 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLL 216 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR------v~Ia~aL~~~p~ll 216 (706)
+|+.|++.+. +.. .+++.+ +. .++.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~----~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQG----ESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chH----HHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888888652 111 123333 22 446799999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEe-CC
Q 005252 217 FLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS-GG 271 (706)
Q Consensus 217 llDEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~-~G 271 (706)
++||||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|. +|
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999999999999999 999999999876 899999999963 457899999996 44
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=1.5e-23 Score=250.34 Aligned_cols=125 Identities=28% Similarity=0.369 Sum_probs=106.1
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHHHhhCC---CEEEE
Q 005252 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p---~llll 218 (706)
+||.|++.|...+. + .....+.++.+||.. ..+.. +..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999975 35554 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ +.+|+|+.| .+|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999997 344 689999999 799999999987654
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.3e-23 Score=246.02 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHHHhh---CCCEEE
Q 005252 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (706)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~---~p~lll 217 (706)
.+||.|.+.|...+. . .....++++.+||.. ..++. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777765431 0 123457888899965 24443 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhH
Q 005252 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (706)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~ 282 (706)
|||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999973 44 679999999 79999999998753
No 386
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=3.6e-24 Score=208.48 Aligned_cols=229 Identities=19% Similarity=0.241 Sum_probs=176.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEec-C----c
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKT-K----L 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~-~----~ 125 (706)
|.++||+..+....+ ..++.++||+++..||+-+++|+||||||-..|+|+|..+.+- .+.-...+++.+. + .
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 678899998876544 4568999999999999999999999999999999999876531 1122334454431 1 1
Q ss_pred C----cCcEEEEecCCC--CCCCCCHHHHHHHHhhccCCCCCC---HHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005252 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMP---WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (706)
Q Consensus 126 ~----~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (706)
+ .+.++.++|++. |-|.-+|...|.-......-.+.- ..-+++++-++|.++|+.+..|-.- .++.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~--SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR--SYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH--hCcchhc
Confidence 1 135789999974 445545544443322111111100 1124567788999999988766543 3788999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
-||-|+|.||.|++..|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||. ..+-+.||++-+|.-|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999976 689999999996 57899999999999999999
Q ss_pred EcCchhHHH
Q 005252 276 FGETSAAFE 284 (706)
Q Consensus 276 ~G~~~~~~~ 284 (706)
.++.++.++
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999988764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=227.23 Aligned_cols=214 Identities=25% Similarity=0.328 Sum_probs=147.0
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-c
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-F 127 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~ 127 (706)
.-.+.++|+++++ ..+.+++|+++++.+|+-++|+|+|||||||+|++|+|+..|....-+-..++ +....+ .
T Consensus 73 s~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEK 146 (614)
T ss_pred cccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchH
Confidence 3458899999988 56889999999999999999999999999999999999987742222222221 111000 0
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhh-cc----------------CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSAR-LR----------------LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGN 189 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~----------------~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~ 189 (706)
..+-+|.+ +.-..+.-+++-+. +. ....+..+....++.+++..+|-. +..++
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k---- 217 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK---- 217 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH----
Confidence 00001110 00011111111100 00 001122334455666777777653 34455
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 190 ~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
..+++|||+|.|+++||+|..+|++|+|||||+|||..+...+-+.|.+..+ .++|+++|. .+.+-..|.+|+.|.
T Consensus 218 -~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 218 -KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLD 293 (614)
T ss_pred -HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheec
Confidence 3467999999999999999999999999999999999999999999877632 289999998 477889999999999
Q ss_pred CCe-EEEEcCchh
Q 005252 270 GGK-TVYFGETSA 281 (706)
Q Consensus 270 ~G~-iv~~G~~~~ 281 (706)
+++ +.|.|+-++
T Consensus 294 ~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQ 306 (614)
T ss_pred ccceeeecCCHHH
Confidence 999 556777654
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=217.35 Aligned_cols=190 Identities=23% Similarity=0.316 Sum_probs=150.6
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...++|.++++++ + ---|+==.+++..||+++++||||-||||+.++|||.++|+ +|+ ..+ -
T Consensus 340 ~~lv~y~~~~k~~-----g-~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~-----~ 401 (591)
T COG1245 340 DTLVEYPDLKKTY-----G-DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED-----L 401 (591)
T ss_pred ceeeecchheeec-----C-ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----c
Confidence 4567888888777 2 22355556788889999999999999999999999999996 675 111 2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|=||--.--...||++.|.-...-+...+ -...++++-|.|++..++.+. +|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHH
Confidence 47788886443355699998876544322211 234567777889888888664 699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|.+++++++||||++.||++.+..+.+.|++... +++|.+++-||. ..+--++||+++..
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999986 589999999996 45566789988764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.1e-22 Score=204.28 Aligned_cols=168 Identities=20% Similarity=0.198 Sum_probs=120.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----c--CcCcCcEEEEecCCCCCCCCCH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 145 (706)
++++++.+.+| +++|+|||||||||||.+|...+.... . ...-|.. . ......+.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~--~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA--S--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc--c--cccccccHHHHhhCCCCeEEEEEEEEcCCccC----
Confidence 46778888887 889999999999999999974332210 0 0001211 0 111244677888765544
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH----hhCCCEEEEeCC
Q 005252 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (706)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL----~~~p~llllDEP 221 (706)
| .. ....++.++++++. .+..++. ++.||+|||||++||++| +.+|++++||||
T Consensus 83 --~-----------~~-~~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 83 --N-----------PL-CVLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --C-----------cC-CHHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 1 01 11123556677765 4455554 457999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~---g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
|+|||..+...+.+.|++++++ +.|||+++|++ .++.+ +|+|-+|+.|+
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999997 45655 49999998754
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=3.2e-23 Score=225.84 Aligned_cols=202 Identities=22% Similarity=0.319 Sum_probs=157.7
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
+-.+.++|+++.|+ ++..++++++|-++.++-+|++||||+|||||||++.|.+.|. .|.|.-.-+ .
T Consensus 387 ~pvi~~~nv~F~y~----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------~ 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------N 453 (614)
T ss_pred CCeEEEeccccCCC----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------c
Confidence 44688999999885 2337999999999999999999999999999999999999985 788754322 2
Q ss_pred cEEEEecC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 129 TAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 129 ~~~yv~Q~--~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+++..|. +.+.-+.++-|++.-.. ++ +...+.+..+|.++||....++. ..++||+|||+||..|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~----~~----~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKF----PD----EKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFA 521 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhc----cc----cchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHH
Confidence 23444454 33444567777765321 11 23346688899999998443332 4467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCc
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGET 279 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~ 279 (706)
+.+++.|.+|+|||||+|||..+...+-+.|.+. ..+||++|||- -.|-+.+++|.+..+|.+. +.|+.
T Consensus 522 ~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 522 RLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999888888765 35899999995 5788999999999887764 45543
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=8.7e-23 Score=212.11 Aligned_cols=179 Identities=23% Similarity=0.265 Sum_probs=119.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------c-C--cCcCc--EEEEecCCCC-CCCCCHHHHH
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-------T-K--LSFGT--AAYVTQDDNL-IGTLTVRETI 149 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-------~-~--~~~~~--~~yv~Q~~~l-~~~lTV~E~l 149 (706)
.+++|+|||||||||||++|++.+.+. .|++..++.. . . ..... +.|..|++.. .-..++++..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999988653 4555543321 0 0 00112 2344443221 1011111110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCChHHHHHHHHHHHHhhC
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~---------~vg~~--------~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
. ..+.... ....+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 0111111 1122446788888998633211 11111 2368999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe-CCe
Q 005252 213 ----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGK 272 (706)
Q Consensus 213 ----p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~-~G~ 272 (706)
|+++++||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|. ++.
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 899999999999999999999999999987799999999994 4678999999986 443
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=1.7e-21 Score=213.86 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=158.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..+++++++..-+. .+..+.+|+|++|+.|+-+.|+||||||||+||++|+|+-+.. +|.+.--... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999886542 2456888999999999999999999999999999999997653 7888653321 1255
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCChHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRV 203 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSGGerqRv 203 (706)
+-||||.|.+.-. |.||-+.|...--. ...+...++++.+.|+.++|.|..++.=| -.....||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999988766 99999988632111 11122234567778888888766544322 112356999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
+.||.+.++|++-||||-||++|......+.+.++++ |.|.|-+.|.++ +.+.=|.++-|++
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999998888877664 899999999964 5677788888874
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-21 Score=212.90 Aligned_cols=201 Identities=22% Similarity=0.279 Sum_probs=142.4
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCc
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 127 (706)
....|...|++..| +.+.+|++-++++..|.-++|+|+||+||||||++|+. |.|. |-+.....
T Consensus 77 ~~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~--~f~veqE~ 140 (582)
T KOG0062|consen 77 KSKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVS--GFHVEQEV 140 (582)
T ss_pred cccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcC--ccCchhhe
Confidence 34568888888888 67899999999999999999999999999999999985 2222 21111100
Q ss_pred CcEEEEecCC-CCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 128 GTAAYVTQDD-NLIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 128 ~~~~yv~Q~~-~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.--|++-.. .+-.+ |.++.+... ..+. ... +..+...++|..+|.++-.-. ...+.||||-|-|+++
T Consensus 141 -~g~~t~~~~~~l~~D-~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 141 -RGDDTEALQSVLESD-TERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLAL 209 (582)
T ss_pred -eccchHHHhhhhhcc-HHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHH
Confidence 011333221 22233 333333321 1111 010 233445558888998653222 2456799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCc
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGET 279 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~ 279 (706)
||||..+|+||+|||||+.||..+...+.+.|+.. +.|+|+++|| +..+-..|..||.+.+-++- |.|+-
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 99999999999999999999999999999998776 3799999999 67777889999988875553 44543
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=2e-20 Score=182.06 Aligned_cols=211 Identities=23% Similarity=0.290 Sum_probs=158.6
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----c
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----L 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~ 125 (706)
..+++.+++|+|+ ..-+++-|+|++++.|.-+.++|.||||||||||+|+|..-.. .|.|.++|.+.- .
T Consensus 12 ~aievsgl~f~y~----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEecc----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccc
Confidence 4589999999995 3458999999999999999999999999999999999975443 589999997521 0
Q ss_pred -CcCcEEEEec----------CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005252 126 -SFGTAAYVTQ----------DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (706)
Q Consensus 126 -~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (706)
......|+-- +-.+-..+++.+ +.|+... ... ++-+++++.+.++- .+..+.
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g-----~dp----~Rre~LI~iLDIdl-------~WRmHk 147 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGG-----DDP----ERREKLIDILDIDL-------RWRMHK 147 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHH-HHhhccC-----CCh----hHhhhhhhheeccc-------eEEEee
Confidence 1122334322 222333556644 4454321 111 23345555555531 123456
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+|-||||||.|++.|++.-++|+|||-|-.||..++..+++.+++-++ +|.|||..||.- +-+.....+++.+++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 999999999999999999999999999999999999999999999886 699999999984 567788999999999999
Q ss_pred EEEcCchhHHHH
Q 005252 274 VYFGETSAAFEF 285 (706)
Q Consensus 274 v~~G~~~~~~~~ 285 (706)
+-.-+.++..++
T Consensus 227 ~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 227 VDNLKYQKIKEF 238 (291)
T ss_pred eeccccchhhhh
Confidence 976655555443
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7.2e-21 Score=201.66 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=150.4
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
+-.|-++|+++.|. +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+.+-| .+-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 34578899998884 5688999999999999999999999999999999999999986 6766533 223
Q ss_pred cEEEEecCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 129 ~~~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.||+..|.. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .++.||||||-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 578887763 45556677777654322 233 2345677889998888885 5678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
..-+..|+||||||||++||..+...+.+.|.+. ...||+++||-. .|.+.--.++++.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999888776 358999999953 34444445555554
No 396
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=3.3e-22 Score=199.78 Aligned_cols=208 Identities=23% Similarity=0.337 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHHHHHHHHHHhhhh-hhHHhhh
Q 005252 384 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM 461 (706)
Q Consensus 384 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~~~~-~~~~~er 461 (706)
+|++.|++|+++..+|||.+. ...++..+++++++|.+|.++++..++. ++.+.+++.+.+..+....+. ..+..|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544454 777877777766665444443 7788999
Q ss_pred hHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 005252 462 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 541 (706)
Q Consensus 462 ~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~ 541 (706)
..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +++.+++.++++..+..++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999987 66777777888888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhh
Q 005252 542 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL 596 (706)
Q Consensus 542 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef 596 (706)
...+..+.+.+..+++++||.+.+.+.+|+ |..|+.|++|++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999985 44459999999999999999876
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=1.2e-20 Score=189.97 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=109.3
Q ss_pred eeceEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCC
Q 005252 72 LEGLTGYAEPG-TLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (706)
Q Consensus 72 L~~vs~~i~~G-e~~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (706)
.-++|+++.+| ++++|+|||||||||||++|+ |..-|. . ....++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~------------~~~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---A------------EGSSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---c------------ccccCcCccEEEE----
Confidence 45799999999 489999999999999999998 322221 0 0011233333211
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005252 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPT 222 (706)
.+++++..+. ....+|+|+||++.|+++ +.+|+++++|||+
T Consensus 78 ---------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 78 ---------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ---------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 0111111111 123589999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+|||+.....+. ..++++.+.|.++|++||+ .++.+++|+++.|.+|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999997 4688887779999999998 3678999999999999998874
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.7e-20 Score=199.64 Aligned_cols=198 Identities=24% Similarity=0.288 Sum_probs=154.6
Q ss_pred eeEEEEEeEEEEEEccCCccc-cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCc
Q 005252 49 SARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 127 (706)
+--+++.++++.+. +.. +++.+++..++.-+-.+++|+||+||||++|++.|-+.|. .|.+.+.+ +
T Consensus 360 ~p~l~i~~V~f~y~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------r 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEYT----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------R 426 (582)
T ss_pred CCeeEEEeeeccCC----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------c
Confidence 34588889887774 333 7999999999999999999999999999999999987764 78776654 2
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+++|-.|...=+-.+.|-+- .+..+.+ |.. +. +.+++-+..+||+. .+.. .+.+||||||-||++|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG~-~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PGK-TE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFA 494 (582)
T ss_pred ceecchhHhhhhHHHHHhHHH-HHHHHhC-CCC-CH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHH
Confidence 568888887543334444333 3333332 322 33 34566778899964 2322 3467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||++||+ .+.+-.+|+.+.+.++|++.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999888776 3589999999 477888999999999999863
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.1e-20 Score=188.70 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=69.0
Q ss_pred ccCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCchHHHhhCC-
Q 005252 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvI~~~H~p~~~i~~~~D- 263 (706)
.+..||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4567999999998877554 5899999999999999999999999999999876 5 58999999964 4567776
Q ss_pred -eEEEEeCCe
Q 005252 264 -RLYLLSGGK 272 (706)
Q Consensus 264 -~vilL~~G~ 272 (706)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=3.3e-20 Score=198.59 Aligned_cols=168 Identities=30% Similarity=0.468 Sum_probs=128.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-------------CcC-----cC--cE----EEEe
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-------------KLS-----FG--TA----AYVT 134 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-------------~~~-----~~--~~----~yv~ 134 (706)
.++|++++|+|+||-||||-+|+|+|.+.|+. |+ .++.+. ... .+ ++ -||.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 57999999999999999999999999999872 32 122110 000 00 11 1222
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC
Q 005252 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (706)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~ 214 (706)
--+..+.. ||+|-|.-. +.+-..+++++.++|++..|+.+. .|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCC
Confidence 22333334 676665421 112357889999999999998764 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 215 llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
++++|||||-||...+..+.+.++++++.+++||++-||. .-+--++|-|.++.+
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999998899999999996 344456888888863
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=6.7e-19 Score=173.96 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
||||||||++||++++ .+|+++++|||+++||+.....+.+.|++++++|.|+|+++|++ +..+.+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 35678999999964
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.1e-18 Score=198.18 Aligned_cols=127 Identities=31% Similarity=0.451 Sum_probs=105.3
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC---CEEEEe
Q 005252 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLD 219 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p---~llllD 219 (706)
|||.|...|.... + .-.+.-+.|.++||.-. .+|. ....|||||.|||-+|.+|..+. .+++||
T Consensus 784 MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 784 MTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred ccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 6777777776432 1 12345567888898522 2342 45579999999999999999877 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHHH
Q 005252 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (706)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~~ 284 (706)
|||+||-.....++++.|.+|.++|.|||++-|.. ++.+.+|.|+-| .+|++++.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999999995 588999999999 4789999999998765
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=4.5e-19 Score=187.82 Aligned_cols=187 Identities=26% Similarity=0.346 Sum_probs=140.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEecCcCcCcEEEEecCC-CCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDD-NLI 140 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~-~l~ 140 (706)
....+|+|||++++||++++|+|+|||||||||++|.|.... ..+.+|.|.+--. ...+.+|-+. .-|
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n------t~~a~iPge~Ep~f 467 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN------TVSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc------chhhccCccccccc
Confidence 346799999999999999999999999999999999997431 1234677655211 1234455542 223
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005252 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDE 220 (706)
...|+.|++.- .+.. -....++|.+.||.+.. .-....++||-|||.|+.||.++...|.+++.||
T Consensus 468 ~~~tilehl~s-----~tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 45577776632 1111 13356789999997532 2122456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEE
Q 005252 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTV 274 (706)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv 274 (706)
--+.||..++..+.+-|.++++ .|.|++++||+| +.+-++ =|.++++.-|++.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 9999999999999999999997 499999999997 444455 5899888766653
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2.2e-18 Score=214.26 Aligned_cols=128 Identities=25% Similarity=0.322 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEE
Q 005252 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFL 218 (706)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~---p~llll 218 (706)
.|||.|.+.|... ..+-.+.-+.|.++||.-. ..|. ....|||||.||+-||.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYL---PLGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3577777766522 1123445678888998642 1232 4457999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHHH
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~~ 284 (706)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| .+|++++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999995 577889999999 4689999999998764
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=3.3e-19 Score=179.31 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=107.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+... ..+++|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45788887665 79999999999999999999988542 1123433211 1366788889999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
+.++... ...+. +++.++++.+++ .+|+++++|||++|+|+.
T Consensus 80 l~~~~s~------~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9875321 12222 567777777652 699999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhh--CCeEEEE
Q 005252 229 AAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL 268 (706)
Q Consensus 229 ~~~~i~-~~L~~l~~~g~tvI~~~H~p~~~i~~~--~D~vilL 268 (706)
....+. ..++++.+.|.|+|++||++ ..+... .+++-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 998775 46888887899999999996 344433 3444443
No 406
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=4.3e-19 Score=192.51 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=140.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.+.++|+-+-.+ ....+...+||++++|-.+.|+||||||||+|.++|+|+-+-. .|... ..+...+
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~------~P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLS------IPRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeee------cCCCcce
Confidence 477788766543 3456889999999999999999999999999999999987642 44332 2333558
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCChHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSAR---LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~----~~~~~LSGGerqRv 203 (706)
-|+||.|.+-.. |.||-+.|.-. ++. ...+ ++....+|+.+.|++.+.+-.|= ....-||||||||+
T Consensus 548 FYIPQRPYms~g-tlRDQIIYPdS~e~~~~-kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 548 FYIPQRPYMSGG-TLRDQIIYPDSSEQMKR-KGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred EeccCCCccCcC-cccceeecCCcHHHHHh-cCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 999999987644 88887766311 110 0111 23455667777776655444331 12245999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi 266 (706)
++||.+-++|+.-+|||-||+........+.+..++ -|.+.|-++|+|+ ++++-.+++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 999999999999999999999998888888777655 4899999999996 455433333
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.1e-18 Score=178.68 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|+|. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999974 568999999998
Q ss_pred CCe
Q 005252 270 GGK 272 (706)
Q Consensus 270 ~G~ 272 (706)
+|+
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 753
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=7.5e-19 Score=179.63 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=115.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE-EEecCCCCCCCCCHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~ 146 (706)
.+.+.+|++++..+|++++|.||||+||||||+.++-.. + ...+| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999987210 0 01122 4554432111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL--~~~p~llllDEP--- 221 (706)
.+++++..+++.+.. .+++|.|+++++.+++++ +++|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344556665332 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|++||....... .++.+.+ .|.++|++||+ .++.+++|++..+++|++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3345544 58999999996 57899999999999999987764
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=6.2e-18 Score=164.53 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++ ++.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 399999999999999987 7899999999999999999999999998866689999999996 4567899999986
Q ss_pred C
Q 005252 270 G 270 (706)
Q Consensus 270 ~ 270 (706)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=3.4e-17 Score=196.17 Aligned_cols=136 Identities=25% Similarity=0.389 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005252 140 IGTLTVRETISYSARLRLPDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
+..+||.|.+.|...+..+.... -++..++++ .++.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 35689999999965443221000 113344554 6888899765 67755 46999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 213 p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
| ++|+|||||+|||+.....+++.|++++++|.|||+++|++. ++ ..+|+|++| .+|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999888999999999964 55 569999999 999999999988764
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=5.5e-17 Score=194.03 Aligned_cols=135 Identities=27% Similarity=0.355 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005252 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p 213 (706)
..|||.|.+.|...+..+..... .+..+++ +.+..+||... .++. +..|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988766532211000 1112222 23667788654 4554 4579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 214 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..+|++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999996 444 589999999 899999999988763
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.69 E-value=2.2e-17 Score=166.40 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=103.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA 153 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 153 (706)
..++++.+|++++|+|||||||||||++|++..-.. ..|.... .....++|..| ++..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~------~~~~~i~~~dq---i~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP------AESASIPLVDR---IFTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc------ccccccCCcCE---EEEEecCccc-----
Confidence 345556689999999999999999999999532110 0221110 00112233222 1111111111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005252 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (706)
Q Consensus 154 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i 233 (706)
.+. ....++++++ |++.+.+++.+|+++++||||+|||+.....+
T Consensus 85 -----------------------------i~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 111 1123555555 57777888999999999999999999988887
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 234 ~~-~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
.. .++.+.+.+.++|++||++ ++.+.+|++..+..|++...++..+
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 65 5677777789999999984 5778899999999999998886543
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=6.4e-16 Score=162.80 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=63.1
Q ss_pred cCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC
Q 005252 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~ 262 (706)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999997753 345555553 3566666
Q ss_pred ---CeEEEEeCCeE
Q 005252 263 ---DRLYLLSGGKT 273 (706)
Q Consensus 263 ---D~vilL~~G~i 273 (706)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.8e-17 Score=171.71 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=146.8
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCC---CceeEEEECCEe
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNA---FLSGTILLNGHK 122 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~---~~~G~I~~~G~~ 122 (706)
.+.|.++|.+.+. ..+.++.|-|++|-.|..++++||||-||||||+.|+.|. +|+. ..+-+|..+..+
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcH
Confidence 4668888888776 5678999999999999999999999999999999999874 3321 012223222221
Q ss_pred -cC----cCcCcEEEEecCCC-----CCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005252 123 -TK----LSFGTAAYVTQDDN-----LIGTLTVRETISYS-ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (706)
Q Consensus 123 -~~----~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 191 (706)
++ ...++...+..++. --...|+.|-+.-. ..++... ....+.++..+|.-+|.+.-.. +..
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG---A~sAEarARRILAGLGFskEMQ----~rP 409 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG---ADSAEARARRILAGLGFSKEMQ----ERP 409 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc---cccchhHHHHHHhhcCCChhHh----cCC
Confidence 00 00011111111100 01234666655432 2233111 1223456777888888764322 223
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
....|||-|-||++||||..+|.+|.|||||++||-.....+-+.|+... +|.++++||- ..+-..|..||.|++-
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQ 485 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhh
Confidence 34699999999999999999999999999999999999999888888874 5999999995 5778899999999987
Q ss_pred eEEE-EcC
Q 005252 272 KTVY-FGE 278 (706)
Q Consensus 272 ~iv~-~G~ 278 (706)
++-| .|.
T Consensus 486 kLhyYrGN 493 (807)
T KOG0066|consen 486 KLHYYRGN 493 (807)
T ss_pred hhhhhcch
Confidence 7754 343
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=4.4e-16 Score=157.13 Aligned_cols=142 Identities=20% Similarity=0.304 Sum_probs=101.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
++.+.+|+++.+++|++++|+||||+|||||++++++..-- +++ | .|| +.....+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 45789999999999999999999999999999999876311 000 0 133 23345556666
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
++... ++..+..+. ..+.+|+|++|+ ..+.+++++|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66322 222221122 123589999865 566778899999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCCEEEEEeCCCchHHHhhC
Q 005252 228 AAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 228 ~~~~~i~-~~L~~l~~~g~tvI~~~H~p~~~i~~~~ 262 (706)
.....+. ..++.+.+.|.++|++||+. ++.+.+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 8766654 56778877899999999994 344443
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.60 E-value=3.2e-15 Score=152.29 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=108.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.+.+|++++.++ ++++|.|||||||||||+.+++..-. |. .|.........++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchh
Confidence 34588999999887 99999999999999999999875321 11 12222112245666654 566777777
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCC---C
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEP---T 222 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRv~Ia~aL~~~p~llllDEP---T 222 (706)
++..+. | ..|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 664321 1 1223334334444679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..++..
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887552 23445555555 89999999994 678899998888899988877665543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.54 E-value=3.8e-14 Score=151.25 Aligned_cols=178 Identities=22% Similarity=0.339 Sum_probs=134.8
Q ss_pred cccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCC
Q 005252 68 THNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (706)
Q Consensus 68 ~~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 142 (706)
.+.-+-+..+.|+.| |++..+|+||-|||||+++|+|+++|+. .|+|-. -.++|=||.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCcccc
Confidence 345567777777776 5789999999999999999999999862 344321 236777887544344
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005252 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPT 222 (706)
-|||+.+.--.+- .-...+.+.++++-|.+++..|..+ .+|||||.|||++|..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5899877532111 0112256778888888887777755 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 223 SGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+-||++.+...-+.+++.- +.++|-.++.||-. -.--++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999999999999998874 46789999999942 2234688887653
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.54 E-value=2.1e-14 Score=150.51 Aligned_cols=137 Identities=28% Similarity=0.313 Sum_probs=92.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---C---cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S---FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
.-++|+||||||||||+++|+|.+.++ +|+|.++|++... . .+.+++++|++. ...++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch------
Confidence 678999999999999999999999886 8999999987531 1 123456677542 23334433310
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 236 (706)
+. .| .....+..+|+++++|||++ ...+...
T Consensus 182 ------k~--------------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KA--------------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HH--------------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 00 01 12223336999999999974 2334444
Q ss_pred HHHHHhCCCEEEEEeCCCchH-H-----------HhhCCeEEEEeCCeEEEEcCchh
Q 005252 237 LRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 237 L~~l~~~g~tvI~~~H~p~~~-i-----------~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
++.+ ++|+++|+++|++.-+ + ..+|||+++|++|+ ..|.+++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 4444 4699999999986421 2 26689999999887 5565543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.46 E-value=4.1e-14 Score=140.75 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
..+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 357887776433332 34599999999999999999888775 556777764 89999999995 57888886444455
Q ss_pred CeEEE
Q 005252 271 GKTVY 275 (706)
Q Consensus 271 G~iv~ 275 (706)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 55443
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=1.2e-13 Score=140.88 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005252 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (706)
Q Consensus 168 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (706)
+.+.+.+...++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556665555332 59999999999987663 46799999999999999999999999999865
Q ss_pred CCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 244 g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+.-+|++||++ .+++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 5899999988764
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=2.7e-12 Score=140.70 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC-
Q 005252 193 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF- 262 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~- 262 (706)
..+|.||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++++|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 468999999999999885 799999999999999999999999988764 458899999853 444443
Q ss_pred -CeEEEEeCCeE
Q 005252 263 -DRLYLLSGGKT 273 (706)
Q Consensus 263 -D~vilL~~G~i 273 (706)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57899999986
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1.8e-12 Score=131.83 Aligned_cols=129 Identities=24% Similarity=0.216 Sum_probs=86.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCC-CCCHH
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG-TLTVR 146 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~-~lTV~ 146 (706)
.|-+|+++.=..+..++|.||||+|||||||.++. .+ + ..|...... .-.++|..|....+. ..++.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a---~~G~~v~a~------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-A---HIGSFVPAD------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-H---hCCCeeEcC------CcEEeeeeeeeeeeCCccChh
Confidence 34455554322238999999999999999999983 23 2 145443221 134567666422111 11111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSG 224 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRv~Ia~aL~~~p~llllDEPTsg 224 (706)
+ ++| .-|-||++++++++.+|+++++|||++|
T Consensus 87 ~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 87 S----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred h----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 1 122 3567999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 005252 225 LDSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (706)
Q Consensus 225 LD~~~~~~i-~~~L~~l~~~---g~tvI~~~H~p 254 (706)
+|+.....+ ...++++.+. +.++|++||++
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 999765555 5688888764 35899999995
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.37 E-value=7.5e-13 Score=119.08 Aligned_cols=72 Identities=18% Similarity=0.045 Sum_probs=58.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----cCcCcEEEEecCCCCCCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTL 143 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-----~~~~~~~yv~Q~~~l~~~l 143 (706)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ...+..+|++|+ ++..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 588999998742 122446777776 5554
Q ss_pred CHHHHHHHH
Q 005252 144 TVRETISYS 152 (706)
Q Consensus 144 TV~E~l~~~ 152 (706)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=2e-12 Score=153.43 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=90.6
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 75 LTGYAEPG-TLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 75 vs~~i~~G-e~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
+|+.+.++ +.++|.||||+|||||||+|+|.. .+. .| .+||..... .+.+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~--~~~~~d~i~-- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHS--EIPYFEEIF-- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCccc--cccchhhee--
Confidence 78888877 999999999999999999999872 221 22 133332210 011111110
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~ 232 (706)
..+ ... +.+.+ ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 371 ~~i------~~~---~si~~------------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 371 ADI------GDE---QSIEQ------------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred eec------ChH---hHHhh------------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 000 000 00100 1245899999999998876 8999999999999999999999
Q ss_pred H-HHHHHHHHhCCCEEEEEeCCCc
Q 005252 233 V-TQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 233 i-~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
+ ..+|+.+.+.|.++|++||++.
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 9 5778888888999999999953
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.36 E-value=1.5e-12 Score=139.22 Aligned_cols=171 Identities=27% Similarity=0.346 Sum_probs=119.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEEC------CEecCcCcCc-----------EEEEecCCCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLN------GHKTKLSFGT-----------AAYVTQDDNLI 140 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~~------G~~~~~~~~~-----------~~yv~Q~~~l~ 140 (706)
+||++.+++|.||-||||-|++|+|.++|+. ...+-.+-+ |........+ .-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 5899999999999999999999999998862 001100000 0000000000 00111111111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 005252 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDE 220 (706)
. .+|.++|. ....+...+++++.+.|.+..|+.+. .|||||-||.+||++-+++.++.++||
T Consensus 178 k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 13333332 11122345677788888888777654 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|.+-||...+..-...++.+...++=||++.||.+ -.--+.|-+..|.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence 99999999999999999999988899999999964 4455688888886
No 426
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.29 E-value=4.7e-10 Score=115.55 Aligned_cols=226 Identities=13% Similarity=0.118 Sum_probs=152.3
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHhhh----hhHHHHHHHHHHHHHhhhhhhHH-hhhhH
Q 005252 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSILAR----GSCASFVFGFVTFMSIGGFPSFV-EDMKV 463 (706)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l-~~~--~~~i~~r----~g~lff~~~~~~~~~~~~~~~~~-~er~v 463 (706)
|+++...|||..+..-+++-+++.+++|.+|-+. +.. ..+.... .|.+.+.....+.. .+..... .|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence 6778889999998888888888888888887543 111 1111111 12221111111111 1121111 22233
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 005252 464 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 543 (706)
Q Consensus 464 f~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~ 543 (706)
+.| ....-.+...|+++|.+.+++..++..+++..+.|++.+++. ..++.+++.+++...+..++|.++++.+++..
T Consensus 79 ~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 333 223344688999999999999999999999999888877554 33444444555566677899999999999998
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHHHHHhhhcCc
Q 005252 544 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQI 623 (706)
Q Consensus 544 ~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~~~ 623 (706)
.+..+.+.+..+++++||.+.|.+.+|+ |..|+.|++|.+|+.|++-..-. |..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~-~~~----------------------- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLA-GVS----------------------- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHh-CCC-----------------------
Confidence 8888888888889999999999999997 44559999999999998554221 100
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHH
Q 005252 624 DVRRSKWIDLSVIFSMIISYRIIFFV 649 (706)
Q Consensus 624 ~~~~~~w~~~~iL~~~~~~~~~l~~~ 649 (706)
.. .+.|.++++|+.+.+++.+++..
T Consensus 210 ~~-~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 PT-FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 00 13567889999998888776643
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=1e-11 Score=126.92 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=90.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
+.+.+|+++.+.+|++++|+||||+||||+|+++++. +.+. .|.....- . -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~a~-~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVPAS-S-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEEcC-c-----eEEeccce---EEEEecCcc
Confidence 5689999999999999999999999999999999983 3332 45543321 1 11222222 111111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRv~Ia~aL~~~p~llllDEPTsgL 225 (706)
++. .++| ..|-+|++-...-+++|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0112 23445555555556789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCchHHHhhC
Q 005252 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~ 262 (706)
|+.....+ ...++.+.+. +.++|++||++. +.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 98777775 5677777775 899999999963 44444
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.26 E-value=1.4e-11 Score=127.82 Aligned_cols=172 Identities=17% Similarity=0.230 Sum_probs=104.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CEe-cCc-----CcCcEEEEecCCCCCCCCCHHHH
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GHK-TKL-----SFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~--G~~-~~~-----~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
+.+.+||.++|+||+|+|||||++.|++...... .+..+.+- |++ .+. ....+-.+.+-+. +..+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~ 84 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERH 84 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHH
Confidence 4688999999999999999999999998775420 11222211 111 000 0011222222221 11111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcC------------CCccccccccCcccCCCChHH--------HHHHHHHHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMG------------LQDCADTVIGNWHLRGISGGE--------RRRVSIALE 208 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~d~~vg~~~~~~LSGGe--------rqRv~Ia~a 208 (706)
+.... ...+.++... ..| +.+..++.++. ....+|||| +||+++|++
T Consensus 85 ~~~~~-----------~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~ 151 (249)
T cd01128 85 VQVAE-----------MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARN 151 (249)
T ss_pred HHHHH-----------HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcC
Confidence 10000 0000011110 111 11223444443 344589999 999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
+..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 152 ~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 152 IEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9999999999 999999655544 54 5556546789999999964 3688999999999987
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.26 E-value=7.3e-12 Score=127.20 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPT-----sgLD~~~~~~i~~~L~~l~~ 242 (706)
-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.26 E-value=1.3e-11 Score=143.06 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~----p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999973 45789999999
Q ss_pred eCCe
Q 005252 269 SGGK 272 (706)
Q Consensus 269 ~~G~ 272 (706)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.23 E-value=1.9e-10 Score=128.27 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=114.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---C------c----CcCcEEEEe
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVT 134 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~---~------~----~~~~~~yv~ 134 (706)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.+|.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998875 79999976542 1 1 124577887
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHhhCC
Q 005252 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (706)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRv~Ia~aL~~~p 213 (706)
+.+.-. -.|....+.+ -.+.|.....|- |..+- ..+|+- -|-+ |++..
T Consensus 221 ~~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~-----rEisl-- 269 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQ-----REIGL-- 269 (438)
T ss_pred CCCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHH-----HHHHH--
Confidence 654310 1111111111 112233333332 21110 011210 1111 11110
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 214 ~llllDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
.+.|| |+|+|+.....+.++++++.. +|. ||++.+||..+ .++|++..+.+|+++..++..+
T Consensus 270 ---~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 ---AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 12454 679999999999999999974 575 99999999752 7899999999999999998653
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=2.8e-11 Score=139.35 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 193 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +..++|+++.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 699999999973 56899999999
Q ss_pred eCC
Q 005252 269 SGG 271 (706)
Q Consensus 269 ~~G 271 (706)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 864
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.22 E-value=8.6e-11 Score=120.98 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=93.1
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTL-L~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
-+++|++++|.|+|||||||| ++.+++..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 389999999999999999999 68888765432 123455432 25556555543332
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~----~~p~llllDEPTsgL----D~~ 228 (706)
.. +++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~~-----------~~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 YD-----------INKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred Cc-----------hHHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 11 1111111 10000010 1 136777655544443332 369999999999999 778
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhhCCeEEEEe
Q 005252 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~H~p~~------~i~~~~D~vilL~ 269 (706)
....+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888999999998888888776664310 1233567777776
No 434
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=4.3e-11 Score=148.05 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=73.7
Q ss_pred ccCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh
Q 005252 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~~----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~ 260 (706)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++|||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 567899999999999999986 7999999999999999999999999999988899999999996 56788
Q ss_pred hCCeEEEEeCC
Q 005252 261 LFDRLYLLSGG 271 (706)
Q Consensus 261 ~~D~vilL~~G 271 (706)
++|+|.+++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.6e-10 Score=132.45 Aligned_cols=137 Identities=24% Similarity=0.383 Sum_probs=104.3
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005252 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERT------IIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
+..|++.|.+.|...+.+... ...-.+..+.++ |..+||.-. .++ ....|||||.||+-+|..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R-----~a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSR-----SAGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccc-----cCCCcChhHHHHHHHHHHhccc
Confidence 356788888888876653321 111111222222 334566432 232 2346999999999999999776
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHHH
Q 005252 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (706)
Q Consensus 213 p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~~ 284 (706)
= =+++||||+-||-+..-.++++.|++|++.|-|+|++.||+ +....+|+|+-+ .+|+|++.|+++++..
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 4 46799999999999999999999999999999999999994 678999999998 5799999999998874
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=2.9e-11 Score=144.00 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
..+|+|++|++.|++++ ++|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++ ......+|+..+ .++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v-~~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGV-ENA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCe-EEE
Confidence 46899999999999988 8999999999999999999988865 6777777899999999995 333334454433 345
Q ss_pred eEEEE
Q 005252 272 KTVYF 276 (706)
Q Consensus 272 ~iv~~ 276 (706)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.19 E-value=2.2e-10 Score=113.18 Aligned_cols=145 Identities=24% Similarity=0.221 Sum_probs=95.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHH
Q 005252 85 TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS 164 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~ 164 (706)
+.|.||+|+|||||.--++-.... +| +.+.|+.= ..|..+.+.....+. .+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~------e~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTL------EESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEEC------CCCHHHHHHHHHHcC----CCh-
Confidence 679999999999998655421100 11 22344432 125555554433332 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 005252 165 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVTQ 235 (706)
Q Consensus 165 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq------Rv~Ia~aL~~~p~llllDEPTsgLD---~~~~~~i~~ 235 (706)
++ +...|+....|. .+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 54 ------~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 54 ------ER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred ------HH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 11 122343333332 44568999998 4444455567999999999999999 888888889
Q ss_pred HHHHHHhCCCEEEEEeCCCch--------HHHhhCCeEEEEe
Q 005252 236 TLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (706)
Q Consensus 236 ~L~~l~~~g~tvI~~~H~p~~--------~i~~~~D~vilL~ 269 (706)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998643 2567899999886
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.19 E-value=5.7e-11 Score=120.53 Aligned_cols=64 Identities=30% Similarity=0.435 Sum_probs=54.4
Q ss_pred cCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
...+|.|+||.+.|...|...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999999988776 899999999999999999999999888776789999999973
No 439
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.18 E-value=3.4e-11 Score=139.64 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=69.6
Q ss_pred ccCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 005252 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~----------~~p~llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~ 259 (706)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 5899999999963 56
Q ss_pred hhCCeEEEEeC-CeE
Q 005252 260 ELFDRLYLLSG-GKT 273 (706)
Q Consensus 260 ~~~D~vilL~~-G~i 273 (706)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 554
No 440
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.18 E-value=8.9e-10 Score=111.29 Aligned_cols=151 Identities=9% Similarity=0.044 Sum_probs=118.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 005252 473 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 552 (706)
Q Consensus 473 Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~~~~a~~~~~~~ 552 (706)
-+...++++|.+..++..++..++...+.|++.|++.. +++.+++.+++..++..+++.++++++++...+ ++...
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence 34567799999999999999999999999999999874 455666667777788889999999999876443 34444
Q ss_pred HHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHHHHHhhhcCcccccchhHH
Q 005252 553 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID 632 (706)
Q Consensus 553 ~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~~ 632 (706)
..+.++++|.+.|.+.+|+ |..|+.|++|.+|+.+++....+.| . ....|.+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~ 184 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQA 184 (208)
T ss_pred HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHH
Confidence 5566678998899999997 4456999999999999987654421 0 1236888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005252 633 LSVIFSMIISYRIIFFVMIKISE 655 (706)
Q Consensus 633 ~~iL~~~~~~~~~l~~~~L~~~~ 655 (706)
+++|+++.+++.++++...|.++
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999888887766544
No 441
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.15 E-value=7.7e-09 Score=108.05 Aligned_cols=232 Identities=11% Similarity=0.045 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHHHHHHHHHHh-hhhhhHHhhhhH
Q 005252 386 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKV 463 (706)
Q Consensus 386 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~-~~~~~~~~er~v 463 (706)
...+.+|+++..+|+ |.....-+++-++.-+++|..|-....+..+ ..-.-|...+...+..+ +++-. .--.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g---~~y~~f~~pg~l~~~~~~~~~~~--~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG---VSYAAFLAAGMVATSAMTASTFE--TIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC---CCHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 456679999999999 9888888888888888888887543111111 11122222222222111 01000 00023
Q ss_pred HHhhhcCCC--------CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 464 FQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 535 (706)
Q Consensus 464 f~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i 535 (706)
+.|||.+|. -++..+++|+++.+.-..++..++...+.+ ..|..+. ...+.++..+++..++..++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 278899999999987766666665555444 3344433 233333344455566677899999
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHHH
Q 005252 536 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEY 615 (706)
Q Consensus 536 ~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~ 615 (706)
+++.++......+...+..+++++||.+.+.+.+|+ |..++.+++|..|+.|++-.. +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 999999998888888899999999999999999997 444588999999999985443 211
Q ss_pred HHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 005252 616 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 652 (706)
Q Consensus 616 vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~ 652 (706)
-+ ..+.|.++++++++.+++..++....|
T Consensus 220 -------~~-~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 220 -------GP-GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred -------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012456788888888888777765444
No 442
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.14 E-value=8.4e-09 Score=106.17 Aligned_cols=220 Identities=13% Similarity=0.050 Sum_probs=135.1
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhh-hhhHHHHHHHHHHHHHhhhhhhHHhhh--hHHHhhhcCCCCC
Q 005252 398 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDM--KVFQRERLNGHYG 474 (706)
Q Consensus 398 ~Rd~~~~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~-r~g~lff~~~~~~~~~~~~~~~~~~er--~vf~rE~~~g~Y~ 474 (706)
+|||.....-+.+.+++-++.+.+|-+-. ..+..+. -.+.+.+...+.+.+.. + -....|| ..+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQ-A-IAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHH-H-HHHHHHHHhCHHHHHhcCC-Cc
Confidence 68999988888888887777777776521 1111111 11111111111111111 1 1223333 3444444333 37
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHH
Q 005252 475 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN---FLMGIITGAG 551 (706)
Q Consensus 475 ~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~~~~p~---~~~a~~~~~~ 551 (706)
...|+++|.+..++..++..+++ .+++++.|++.....+ ..++.+.+....+.+++.++++++++ .+.+..++..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 89999999998888877665544 4556778888653332 22223333344455667777777644 4444677788
Q ss_pred HHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHHHHHhhhcCcccccchhH
Q 005252 552 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI 631 (706)
Q Consensus 552 ~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~ 631 (706)
+..+++++||.+.|.+.+|+ |..|+.+++|++|+.+++-.--. + +.+ ....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~-~-----------------------~~~-~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAAT-V-----------------------SVD-TFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHc-C-----------------------CCC-hhhHHH
Confidence 88889999999999999997 55569999999999997654311 1 000 123677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005252 632 DLSVIFSMIISYRIIFFVM 650 (706)
Q Consensus 632 ~~~iL~~~~~~~~~l~~~~ 650 (706)
++++++++.+++..++...
T Consensus 209 ~~~~l~~~~~v~~~la~~~ 227 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAIR 227 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877666553
No 443
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=2e-10 Score=117.16 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=88.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.+-+|+++..++|++++|.||||+||||+++.+++..--. ..| -...... +-++--|.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~---~~i~~~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKS---MRLSLVDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccc---cEeccccEEEEecCccc
Confidence 356889999999999999999999999999999998753110 011 1110000 11111122222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--GGerqRv~Ia~aL~~~p~llllDEPTsgL 225 (706)
++.. ++| ..|-+|++-....+++|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 005252 226 DSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (706)
Q Consensus 226 D~~~~~~i~~~-L~~l~~~-g~tvI~~~H~p 254 (706)
|+.....+... ++.+.+. +.++|++||++
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 99999999888 7788775 89999999995
No 444
>PRK13695 putative NTPase; Provisional
Probab=99.12 E-value=3.1e-11 Score=118.76 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
..+||+|+-+..+.+..+.+|+++++||| ..++..+ ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+|+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGR 152 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcE
Confidence 35999999999999999999999999995 2233333 445666766667789999999983 4667899999999999
Q ss_pred EEEE
Q 005252 273 TVYF 276 (706)
Q Consensus 273 iv~~ 276 (706)
+++.
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 9765
No 445
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.06 E-value=4.7e-08 Score=101.94 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCChhhHh--hhhhHHHHHHHHHHHH----Hhhhhh
Q 005252 383 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSIL--ARGSCASFVFGFVTFM----SIGGFP 455 (706)
Q Consensus 383 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l-~~~~~~i~--~r~g~lff~~~~~~~~----~~~~~~ 455 (706)
+++++.+++|+++...|||..+..-+++-++.-+++|.+|-.. +.+..... ...-..|++.+...+. ++.+-.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999999999999999988542 11000000 0011222222221111 111111
Q ss_pred hHHh--hhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 456 SFVE--DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMM 533 (706)
Q Consensus 456 ~~~~--er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~ 533 (706)
.... |+..+.+=+... .+...+.+++++..+-..++..++...+.+. .|.+.+...++.....+++......++|.
T Consensus 81 ~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl 158 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGL 158 (253)
T ss_pred HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1222 222333333333 4778899999999987777766554444432 36655543444333444455566778999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCc-cccccccccccHHHHHHHHHHH
Q 005252 534 AIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPK-PVWRYPMSYLSFHYWALQGQYQ 593 (706)
Q Consensus 534 ~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~W~~~~~yis~~~ya~e~l~~ 593 (706)
++++++++......+.+.+..+++..||.+-+.+.+|. +-|..|+.+++|+.|..|++-.
T Consensus 159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 159 ALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999887777788888889999999988877742 1255568889999999987754
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.03 E-value=5.9e-10 Score=119.77 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=94.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCcC-cCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.|.++... .... ...+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 55778899999999999999999999999998765 5667765321 1110 011111111000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~ 232 (706)
+ + ..+++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 -------------------------------~---~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 -------------------------------Q---G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------------C---C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 000111 1134556778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 233 i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+.+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766543346799999975 56779999999999988888776654
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.02 E-value=4.2e-09 Score=126.88 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=60.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH---------hhCCeEEEEeCCeEEEEcCc
Q 005252 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 210 ~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~---------~~~D~vilL~~G~iv~~G~~ 279 (706)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++|++||+|. ++. +.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999888999999999985 443 68999999999998776643
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=6.9e-10 Score=135.47 Aligned_cols=77 Identities=30% Similarity=0.304 Sum_probs=68.4
Q ss_pred ccCCCChHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCe
Q 005252 191 HLRGISGGERRR------VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 191 ~~~~LSGGerqR------v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~ 264 (706)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|..++..+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 456799999994 5556678899999999999999999999999999999877788999999996 46789999
Q ss_pred EEEEe
Q 005252 265 LYLLS 269 (706)
Q Consensus 265 vilL~ 269 (706)
++.|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99997
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.00 E-value=5.4e-09 Score=101.64 Aligned_cols=63 Identities=25% Similarity=0.363 Sum_probs=52.6
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
....|-||-=---+.+. .++..+++||||-++|.+.-+..++..|+++++.|.-+|+.||.|.
T Consensus 127 Lh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 34579998654333333 4577899999999999999999999999999999999999999984
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=2.1e-09 Score=102.63 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~ 257 (706)
.+.++.++...+++...+|+++++||+++ +.|......+.+++..+.+.+.|+|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888889999999999999994 4555556666666666655799999999997543
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.99 E-value=1.4e-09 Score=134.34 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=68.7
Q ss_pred ccCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC
Q 005252 191 HLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~~--------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~ 262 (706)
.++.|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+++.|+||++|||.+ ...-.+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 567899999999999999996 8999999999999999999999999999988899999999974 3344455
Q ss_pred CeEEEEeC
Q 005252 263 DRLYLLSG 270 (706)
Q Consensus 263 D~vilL~~ 270 (706)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66666654
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=1.6e-09 Score=120.10 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=116.8
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEE
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 131 (706)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+..
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg-------- 194 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG-------- 194 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------
Confidence 44555554442 234578885 999999999999999999999999999988765 67776666421
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~- 210 (706)
.+|+|.+..... .-|+.+. ..+ ....+-|.|+|+|+..+...+
T Consensus 195 -----------~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 195 -----------REVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred -----------ccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 367766543211 1122110 111 123467999999999988887
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 211 ------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
.++-++++|+||...|+. .++-..+.+....|.+..+.+|.+ .+++.+- ...+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERag---~~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERSG---KTQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHhc---cCCCcceEEEEEE
Confidence 789999999999999996 555555566554588888888852 3444444 3578888766654
No 453
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.5e-09 Score=137.23 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=64.9
Q ss_pred cccccCcccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 005252 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (706)
Q Consensus 184 d~~vg~~~~~~LSGGerq------Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~~H 252 (706)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 56554 23469999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CCchHHHhhC
Q 005252 253 QPSSEVFELF 262 (706)
Q Consensus 253 ~p~~~i~~~~ 262 (706)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 96 5666654
No 454
>PRK15066 inner membrane transport permease; Provisional
Probab=98.94 E-value=2.1e-07 Score=97.44 Aligned_cols=244 Identities=12% Similarity=0.131 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhhHHHHHHHHHHHH----Hhhh-hh
Q 005252 382 FLMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM----SIGG-FP 455 (706)
Q Consensus 382 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~----~~~~-~~ 455 (706)
.|+-++.+.+|+.+...||+.. ...-+++.++..+++|.++-....+..+. .-..|++.+...+. ++.. ..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~---~y~~fl~pGll~~~~~~~~~~~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF---SYMQFIVPGLIMMSVITNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999854 33344445556666666553210100111 11223322222221 1111 12
Q ss_pred hHHhhhhH-HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 456 SFVEDMKV-FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 534 (706)
Q Consensus 456 ~~~~er~v-f~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~ 534 (706)
.+.+++.. ..++...---+...+.+++++...-..++..++...+.+...|.+... ...++..+++...+....+++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 22333310 011111223478889999999877665665555555544444665432 222222222323333345788
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHH
Q 005252 535 IASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGE 614 (706)
Q Consensus 535 i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~ 614 (706)
++.+.++......+.+.+..+++..||.+.+.+.+|. |.+|+.+++|++|..|++=..-+ |
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~-g---------------- 221 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL-G---------------- 221 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc-C----------------
Confidence 8888888877777888888899999999999999996 55568999999999988754211 1
Q ss_pred HHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005252 615 YVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 658 (706)
Q Consensus 615 ~vL~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~~~ 658 (706)
.+ +...|.++++++++.+++..++....|..++.|
T Consensus 222 --------~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 222 --------IS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred --------CC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00 123578889999999988888887776655544
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.92 E-value=1.2e-08 Score=105.15 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=99.6
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS-SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-|+.+ .+=+++|.++.|.|++|+|||||...++ +.... | +.+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g-------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----------G-------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----------C-------CEEEEEEcCC------CHHHH
Confidence 45554 5679999999999999999999998875 21111 1 2345655532 33333
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG-- 224 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~--~p~llllDEPTsg-- 224 (706)
+.-...+.. . +++.+. .|.-...+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~----~-------~~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI----D-------ISDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC----C-------hhHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 332222211 1 011110 011111111111 112346788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch------HHHhhCCeEEEEeC
Q 005252 225 -LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLSG 270 (706)
Q Consensus 225 -LD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~------~i~~~~D~vilL~~ 270 (706)
.|......+++.++.++++|.|+++++|++.. .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777789999999998642 14566788887763
No 456
>PRK01156 chromosome segregation protein; Provisional
Probab=98.91 E-value=3.8e-09 Score=129.20 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=66.7
Q ss_pred ccCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEeCCCchHHHhh
Q 005252 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 261 (706)
Q Consensus 191 ~~~~LSGGerqRv~I------a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvI~~~H~p~~~i~~~ 261 (706)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999963 5689
Q ss_pred CCeEEEEe
Q 005252 262 FDRLYLLS 269 (706)
Q Consensus 262 ~D~vilL~ 269 (706)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.82 E-value=1.9e-08 Score=101.28 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=43.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+|+++|..+|+++++|||. |.++...++ +.+..|+.++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 655433333 35567999999999975 357789987764
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=6.2e-09 Score=130.44 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE
Q 005252 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi 266 (706)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 478999999974 457899998
Q ss_pred EEe
Q 005252 267 LLS 269 (706)
Q Consensus 267 lL~ 269 (706)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.78 E-value=4.2e-08 Score=101.58 Aligned_cols=136 Identities=29% Similarity=0.452 Sum_probs=84.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (706)
|++..|+||+|+|||||+-.++=-.. +|.=++.+ ... .....+.|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67899999999999999987763221 22211111 111 1123455554332
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 005252 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~----------------aL~~~p~llllDEPTs- 223 (706)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12333455566666665544333322 1244555544433 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc
Q 005252 224 -----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS 255 (706)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~ 255 (706)
.+|+.....+++.|+++++ .|.+||+++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999999999986 4899999999863
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.75 E-value=6.5e-09 Score=115.20 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=44.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKT 123 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~ 123 (706)
+.+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 56899999999999999999999999999999 6777664 56 899999875
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=2.9e-08 Score=121.35 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=66.7
Q ss_pred cCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCchHH
Q 005252 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (706)
Q Consensus 192 ~~~LSGGerq------Rv~Ia~aL~~~-----p-~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvI~~~H~p~~~i 258 (706)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999998864 3 67999999999999999999999999986664 8999999973 4
Q ss_pred HhhCCeEEEEeC
Q 005252 259 FELFDRLYLLSG 270 (706)
Q Consensus 259 ~~~~D~vilL~~ 270 (706)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.70 E-value=5.8e-08 Score=109.27 Aligned_cols=151 Identities=22% Similarity=0.295 Sum_probs=94.0
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHH
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
.++++.+..++.|++++++||||+||||++..|++++... .|. +.+++|.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999876432 221 2467888875 346899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTS 223 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq-Rv~Ia~aL~~~p-----~llllDEPTs 223 (706)
.+.+...- .+........+......+|.+....+|.. ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766531 11111112233344456676654444432 2222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 005252 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIH 252 (706)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~~H 252 (706)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3445555555555555555555
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.67 E-value=3.6e-08 Score=123.68 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=67.9
Q ss_pred ccCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEE
Q 005252 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vi 266 (706)
.+..||||||++++||++++. +|++++||||+++||+.....+.++|++++. +.++|++||++ .....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 47899999996 3679999998
Q ss_pred EEe
Q 005252 267 LLS 269 (706)
Q Consensus 267 lL~ 269 (706)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 875
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.63 E-value=8.8e-07 Score=81.22 Aligned_cols=118 Identities=31% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (706)
++..+.|.||+|+||||+++.|+..+.... .+-+.++....... ......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE----------------VLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc----------------CHHHHH------------
Confidence 467899999999999999999998876531 13444444321100 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 005252 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~----- 235 (706)
.... + .......+++..+..+.++--.+|.++++||+..-.+.........
T Consensus 51 --------------~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------LIIV-----G-----GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------hhhh-----h-----ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000 0 0112367788888888888877899999999999999998887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 005252 236 -TLRCLSRDGRTVIASIH 252 (706)
Q Consensus 236 -~L~~l~~~g~tvI~~~H 252 (706)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223345788999998
No 465
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.53 E-value=8.7e-06 Score=84.65 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=114.3
Q ss_pred hhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 005252 461 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-SIV 539 (706)
Q Consensus 461 r~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~sl~~~i~-~~~ 539 (706)
...+.|=..+...+ ..+++++.+...-...+...+...++.+..|... ...+..+...+.+......++|.+++ ...
T Consensus 117 ~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 117 FGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444433 5667777777666666666666666666666322 22334444444555556667777555 366
Q ss_pred chhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCccCCCCCCCCCcCHHHHHhh
Q 005252 540 PNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLEN 619 (706)
Q Consensus 540 p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~vL~~ 619 (706)
.+...+..++..+..++++++|.+.+.+.+|. |..|+.++.|.+|+.+++-.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~--------------------- 251 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG--------------------- 251 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC---------------------
Confidence 77888888888899999999999999999997 6666889999999998887643211
Q ss_pred hcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005252 620 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 656 (706)
Q Consensus 620 ~~~~~~~~~~w~~~~iL~~~~~~~~~l~~~~L~~~~~ 656 (706)
.. ..+.|.++++++++.+++.+++...+|..++
T Consensus 252 ---~~-~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 252 ---WR-NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred ---Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1126888999999999999999887776554
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.52 E-value=2e-06 Score=104.36 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=55.0
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh--hCCeEEEEeCCeEE
Q 005252 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~--~~D~vilL~~G~iv 274 (706)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 577888999999999999999 799999999999999888999999999975 4544 33444444444444
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.52 E-value=3.9e-08 Score=112.13 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=96.2
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEecC----cCcCcEEEEecCCCCCCCC
Q 005252 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTK----LSFGTAAYVTQDDNLIGTL 143 (706)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~~~~G~I~~~G~~~~----~~~~~~~yv~Q~~~l~~~l 143 (706)
-|+.+ .+=+++|..+.|.|++|||||||..-. .|....+ +.-+++...... ...+..|+-.|+..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 35664 567999999999999999999998866 3443322 333444332210 00112232222100000
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH--HHHhhCCCEEEEeCC
Q 005252 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEP 221 (706)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia--~aL~~~p~llllDEP 221 (706)
++.+ + . ..+. .....+++.+++.+..+... +.+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~--~-~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---L--D-ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---E--e-cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 0 0 0000 00111233344444444432 45899999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-------H-HhhCCeEEEEe
Q 005252 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (706)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~-------i-~~~~D~vilL~ 269 (706)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986420 2 45789999987
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.50 E-value=1.5e-06 Score=97.42 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=107.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-------------CcCcEEEEe
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------------SFGTAAYVT 134 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-------------~~~~~~yv~ 134 (706)
...+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|+.... ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 999999999999999999999999999998775 6766666653110 011223333
Q ss_pred cCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHhhCC
Q 005252 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (706)
Q Consensus 135 Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRv~Ia~aL~~~p 213 (706)
+.+. ++.+-. + .....-.+.+.+...|- |..+ ....|+- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~------~------~~~~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-----Eis--- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRL------K------GAYVATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-----EIG--- 273 (440)
T ss_pred CCCC-----CHHHHH------H------HHHHHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-----HHH---
Confidence 3221 111111 0 00011123333333343 2222 1112221 12222 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 214 ~llllDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||.. ...+|++.-+.+|+++.++...+
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234675 459999999999999999887666 8888888863 34789999999999999887653
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=1.3e-07 Score=105.10 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=108.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----------cCcCcEEEEecC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-----------~~~~~~~yv~Q~ 136 (706)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 999999999999999999999999999998775323355555554321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH-HHHHHHHhhCCCE
Q 005252 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRL 215 (706)
Q Consensus 137 ~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-v~Ia~aL~~~p~l 215 (706)
+..+..+++.|++.+.+....... ..|--+++ .+...+ |-+| +++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a---------------~A~REisl---------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYA---------------MAQREIAL---------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHH---------------hhhhHHHH----------
Confidence 999999999999987765431111 00000000 000000 1111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh-C--C-CEEEEEeCCCchHHHh-hCCeEEEEeCCeEEEE
Q 005252 216 LFLDEP--TSGLDSAAAFFVTQTLRCLSR-D--G-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (706)
Q Consensus 216 lllDEP--TsgLD~~~~~~i~~~L~~l~~-~--g-~tvI~~~H~p~~~i~~-~~D~vilL~~G~iv~~ 276 (706)
.+.|| +.|-.+.-...+-+++.+... + | .|.+.+..-+.+++-+ .+|.+.-+-||+++-.
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12343 236666666677777777632 2 2 5777776655544333 5677887889999864
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.47 E-value=5.5e-07 Score=98.34 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
++..+|-.+|+++++||+. |..++...++ .+..|++|+.|+|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 4567999999999864 45667777655
No 471
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=2.9e-07 Score=101.20 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 194 GISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~---------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
.+|.||+|++.||..|+. +|+||+||||+++||...+..+++.|.+. |.+|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999754 679999999863
No 472
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.44 E-value=5.5e-08 Score=99.77 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.6
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005252 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (706)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (706)
-|+.+ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988655
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.43 E-value=7.2e-07 Score=109.30 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=69.6
Q ss_pred ccCCCChHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC
Q 005252 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~------~~--p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~ 262 (706)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999888877764 35 599999999999999999999999999998899999999994 678899
Q ss_pred CeEEEEeC
Q 005252 263 DRLYLLSG 270 (706)
Q Consensus 263 D~vilL~~ 270 (706)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999873
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.43 E-value=5.4e-07 Score=89.76 Aligned_cols=81 Identities=23% Similarity=0.229 Sum_probs=59.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCc-CcCcEEEEecCC--CCCCCCCHH
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDD--NLIGTLTVR 146 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-~~~-~~~~~~yv~Q~~--~l~~~lTV~ 146 (706)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.|.+++.. ... ....++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344456678899999999999999999999999998875 7999998753 111 123456665553 345667888
Q ss_pred HHHHHHhh
Q 005252 147 ETISYSAR 154 (706)
Q Consensus 147 E~l~~~~~ 154 (706)
+.+..+.+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 87776544
No 475
>PRK14079 recF recombination protein F; Provisional
Probab=98.40 E-value=5.8e-07 Score=98.32 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCe
Q 005252 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~ 264 (706)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 47999999999999998 8999999999999999999999998886532 355554543 357999
Q ss_pred EEEEeCCeEEE
Q 005252 265 LYLLSGGKTVY 275 (706)
Q Consensus 265 vilL~~G~iv~ 275 (706)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999988753
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=3.1e-07 Score=92.12 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=64.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhh-ccCCCCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR-LRLPDKMP 162 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~ 162 (706)
+++|.||||||||||.+.|++.+. .|. +.++++|+.. ..++..+....... ...+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 579999999999999999999762 222 2334444322 22233333222111 11121111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
.+...+.+..+...+..+.+ ....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334555555544333332 23577887776555 5678999999999999876
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.38 E-value=8.9e-06 Score=98.49 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88899999999999888999999999974
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=9e-07 Score=98.59 Aligned_cols=184 Identities=20% Similarity=0.193 Sum_probs=110.1
Q ss_pred ceeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC
Q 005252 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK 124 (706)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~ 124 (706)
.+-.++.++++..+. ....+++.++ .+.+||.++|+|||||||||||++|++...++ .|.|.+.|+ +..
T Consensus 136 ~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~ 207 (450)
T PRK06002 136 APPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVR 207 (450)
T ss_pred CCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHH
Confidence 444578888888874 2367889996 89999999999999999999999999998875 799988653 211
Q ss_pred ---------cCcCcEEEEecCCCCCCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 005252 125 ---------LSFGTAAYVTQDDNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (706)
Q Consensus 125 ---------~~~~~~~yv~Q~~~l~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 193 (706)
...+.+++|+|.+. +.-+-+ .+.+ -.+.|.+...|- |..+ ...
T Consensus 208 e~~~~~l~~~r~rtI~vV~qsd~-----~~~~r~~~~~~a--------------~~iAEyfrd~G~----~Vll---~~D 261 (450)
T PRK06002 208 EFLEDTLADNLKKAVAVVATSDE-----SPMMRRLAPLTA--------------TAIAEYFRDRGE----NVLL---IVD 261 (450)
T ss_pred HHhHHHHHHhhCCeEEEEEcCCC-----CHHHHHHHHHHH--------------HHHHHHHHHcCC----CEEE---ecc
Confidence 12356899999874 121111 1111 011222222222 2111 011
Q ss_pred CCCh-HHHHH-HHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHh--C--C-CEEEEEeCCCchHHHh-hCC
Q 005252 194 GISG-GERRR-VSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSR--D--G-RTVIASIHQPSSEVFE-LFD 263 (706)
Q Consensus 194 ~LSG-GerqR-v~Ia~aL~~~p~llllDEP--TsgLD~~~~~~i~~~L~~l~~--~--g-~tvI~~~H~p~~~i~~-~~D 263 (706)
.|+- -|-+| +++ .++|| +-|--+.--..+-+++.+..+ + | .|.+.+..-+.+++-+ .+|
T Consensus 262 slTr~A~A~rEisl-----------~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d 330 (450)
T PRK06002 262 SVTRFAHAAREVAL-----------AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVAD 330 (450)
T ss_pred chHHHHHHHHHHHH-----------hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHH
Confidence 1211 11111 222 12454 336666666667777777653 2 3 5777776665544322 467
Q ss_pred eEEEEeCCeEEEE
Q 005252 264 RLYLLSGGKTVYF 276 (706)
Q Consensus 264 ~vilL~~G~iv~~ 276 (706)
.+.-+-||+++-+
T Consensus 331 ~~~~i~Dg~ivLs 343 (450)
T PRK06002 331 SIRGTLDGHIVLD 343 (450)
T ss_pred HHHhhcceEEEEc
Confidence 7777778998864
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=8.3e-07 Score=97.17 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCcccccee--------
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~-------- 73 (706)
++.++++|+.++++.+++-. ..| ....-.+.|+||++.|+ ..+.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~------~~~---------------e~~~~ri~Fe~LTf~YP----~er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNG------DDP---------------EKAKNRVLFENLTPLYP----NERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCC------CCc---------------cccCCCeEEEEeeecCC----CccceeecCccccce
Confidence 45678999999999888722 112 01123599999999994 3346786
Q ss_pred ---ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 74 ---~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
|+++.+.+||.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999988654
No 480
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.34 E-value=9.7e-07 Score=106.86 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=85.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
..|-+|+++. +.+.++.|.|||++||||+|+.++-..--. .-| .|||-+.. .+++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a---~i~~~-- 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESA---RIGIV-- 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------Cceeccce---Eeccc--
Confidence 4567888887 677899999999999999999986431000 011 13332211 01111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCC---CC
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEP---TS 223 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~--~~p~llllDEP---Ts 223 (706)
+.+..++|-. |. ..+|+|-=+.....++..|- ++++++++||| |+
T Consensus 651 ----------------------d~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 651 ----------------------DRIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ----------------------CeeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1111112221 11 12356766666666666554 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCe
Q 005252 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~ 264 (706)
.+|..+ .....++.+.+. |.+++++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888433 345566667665 5899999999 467777775
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.29 E-value=3.4e-06 Score=105.99 Aligned_cols=164 Identities=21% Similarity=0.312 Sum_probs=90.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
.=+++..+++++++|+|++|+|||||++++++..... .+|.+.+++........ .+-.++.. ..+...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~-------~~~~~~- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPD-------DYNMKL- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hccccccc-------ccchhH-
Confidence 3356777889999999999999999999998876543 47888887532111000 01000000 000000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~ 232 (706)
...++.+.++++..++. + .. .++.|+|+ ..++-+++||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~-----~~-~~~~~~~L------~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------I-----YH-LGAMEERL------KHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------c-----CC-HHHHHHHH------hCCeEEEEEeCC----CCH---H
Confidence 01112333444333331 1 11 25666663 355667788984 433 3
Q ss_pred HHHHHHHHH---hCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEEcCchhHHHHHHhcCC
Q 005252 233 VTQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (706)
Q Consensus 233 i~~~L~~l~---~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~G~~~~~~~~f~~~g~ 291 (706)
.++.|.... ..|.+||+|||+.. .+... +|+++.+.. =+.+++.+.|...-+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 344444433 35899999999953 33223 577665531 134568888876544
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.17 E-value=2.5e-06 Score=108.05 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=53.0
Q ss_pred cCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 192 LRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 192 ~~~LSGGerqRv~----Ia~a--------L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|++||..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999888 78999999873
No 483
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.12 E-value=6.1e-05 Score=79.24 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568888889999999999999999999999887654
No 484
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.10 E-value=2.7e-05 Score=75.15 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=88.8
Q ss_pred hhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005252 459 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGF--IHYLFFVLCLYASVAVVESLMMAIA 536 (706)
Q Consensus 459 ~er~vf~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~i~~~i~Y~m~gl~~~~--~~f~~f~l~l~~~~~~~~sl~~~i~ 536 (706)
.|+.++.|-+..-. +.+.|+++|++...-..++..++..++.++ .|.+.+. ...+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776655 799999999999998888887777777654 4877653 2222222222333334445555555
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHH
Q 005252 537 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY 592 (706)
Q Consensus 537 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya~e~l~ 592 (706)
...++... ......+..++++.||.+.|.+.+|+ |..|+.+++|.+|+.+++-
T Consensus 94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 44455433 33346667788888999999999996 7777999999999998874
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.10 E-value=5.2e-05 Score=92.00 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=42.4
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 209 ILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999974
No 486
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.10 E-value=1.4e-06 Score=86.13 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=42.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----cCcEEEEecCCCCCCCCCHHHHHHH
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (706)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46777653211 1123555665444444455555544
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.06 E-value=4.5e-06 Score=67.68 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=29.5
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 72 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
.++-++++.+ |+++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456677775 569999999999999999999765544
No 488
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.05 E-value=0.00077 Score=70.00 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCChhhHhhhhhHHHHHHHHHHHHHhhhhhhHHhhhh
Q 005252 387 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV----GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMK 462 (706)
Q Consensus 387 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~l----~~~~~~i~~r~g~lff~~~~~~~~~~~~~~~~~~er~ 462 (706)
+.+.||.++...|.|..+..-.+..++.|+.. ..|.+. ..+.++.+ +...+......+ .+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLT---PFFSLAPWVFLF----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHH---HHHHHHHHHHHH----HHHHH--HHH
Confidence 46789999999999998876666665555332 222111 11111111 111111101111 12221 235
Q ss_pred HHHhhhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccccc---cCHHHHHHHHHHHHHHHHHH
Q 005252 463 VFQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITF---ISGTICYFMVRLH---PGFIHYLFFVLCLYASVAVV 528 (706)
Q Consensus 463 vf~rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~---i~~~i~Y~m~gl~---~~~~~f~~f~l~l~~~~~~~ 528 (706)
.+.+||.+|.. +...++++|.++-+-+.++..+ ++....++ .|.+ .+...++...+.+++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 66788877775 5678999999998655443322 12222221 1221 24445443444444555567
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHH
Q 005252 529 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWA 587 (706)
Q Consensus 529 ~sl~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~~~~yis~~~ya 587 (706)
.++|.++++++.|...|..++..+... ++.|+-. ..++|.+.|..|+.|+||..|-
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~ 206 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHY 206 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHH
Confidence 799999999999988876555433222 2222211 1233211244568899987664
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.03 E-value=1.2e-05 Score=89.87 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=70.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecC------c--CcCcEEEE----
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK------L--SFGTAAYV---- 133 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~------~--~~~~~~yv---- 133 (706)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. . .....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 5688988 999999999999999999999999999987432 2477777663 211 0 11234455
Q ss_pred -ecCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 005252 134 -TQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (706)
Q Consensus 134 -~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (706)
+|++. +.+.+ +...+.-..+.+-.......+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88752 33443 444444433322111122345667888899998884
No 490
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.02 E-value=4.4e-05 Score=70.60 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQPS 255 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~~H~p~ 255 (706)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444555566778999999998765 56667777888877653 4678889988643
No 491
>PRK01889 GTPase RsgA; Reviewed
Probab=98.01 E-value=5e-06 Score=91.21 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=57.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec--CcCcCcEEEEecCCCCCCCCCHHHHH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
++.+.-.+++|++++|+|+||+|||||+|+|+|...+. +|+|.+++... ....+.+.+++|+..++++ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 45555567899999999999999999999999988774 89999987432 1123568899998877765 444444
Q ss_pred HH
Q 005252 150 SY 151 (706)
Q Consensus 150 ~~ 151 (706)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
No 492
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.94 E-value=1.9e-05 Score=69.29 Aligned_cols=48 Identities=40% Similarity=0.518 Sum_probs=36.7
Q ss_pred cCCCChHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005252 192 LRGISGGERR-RVSIALEI------LM------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (706)
Q Consensus 192 ~~~LSGGerq-Rv~Ia~aL------~~------~p~llllDEPTsgLD~~~~~~i~~~L~~ 239 (706)
..++|||||| .+.++.++ -. .|++++||||+++||......++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 44444333 22 3799999999999999999999999874
No 493
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.94 E-value=1.6e-05 Score=75.69 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005252 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (706)
Q Consensus 169 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL-----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 240 (706)
.+.+.+...+.. -..+.+ +...++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~---vi~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIP---FLVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCC---EEEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 344556555432 122222 2345788988887666553 2345555 99999999999999988764
No 494
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.90 E-value=0.00029 Score=72.94 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=36.9
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCCchHHHhhC
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~-L~~l~~-~g~tvI~~~H~p~~~i~~~~ 262 (706)
+++..++|+||.-.|=++.....+... ++.+.+ .+..++++||.. ++.++.
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 456789999999999999998887654 566776 488999999995 344443
No 495
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.90 E-value=0.00032 Score=77.39 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCchH
Q 005252 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL-----DSAAAFFV----------TQTLRCLSR-DGRTVIASIHQPSSE 257 (706)
Q Consensus 194 ~LSGGerqRv~Ia~aL~~~p~llllDEPTsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvI~~~H~p~~~ 257 (706)
+=||-.-|=.+|..||=...++||+||=||+- |...+..| ++.++.|.+ .|.+.|+++-- +.+
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999975 55555554 555667744 58888888765 577
Q ss_pred HHhhCCeEEEEeCCeE
Q 005252 258 VFELFDRLYLLSGGKT 273 (706)
Q Consensus 258 i~~~~D~vilL~~G~i 273 (706)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987544
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.87 E-value=3.2e-05 Score=90.66 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH--HHHHHh
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE--TISYSA 153 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E--~l~~~~ 153 (706)
..+.++|+||||+|||||++++.+...+.. ...+-|.+||..... ..++ +-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC-
Confidence 346799999999999999999998764320 012335555432210 1111 11111
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005252 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (706)
Q Consensus 154 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i 233 (706)
.. .+...+...+.++..|+.+..+..+ ..+||| +||+|| +..||...+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 1111233455677788876655543 457888 999999 899999999998
Q ss_pred HHHHHH
Q 005252 234 TQTLRC 239 (706)
Q Consensus 234 ~~~L~~ 239 (706)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 497
>PRK13764 ATPase; Provisional
Probab=97.87 E-value=0.0001 Score=85.34 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=49.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCchHHHhhCCeEEEEeCCeE
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------------QPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------------~p~~~i~~~~D~vilL~~G~i 273 (706)
|..+|+++++||.-.. ++ ++.+..++..|..++.|.| +. ..+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 6789999999999843 22 4445555556888999999 64 457779999999999999
Q ss_pred --EEEcCch
Q 005252 274 --VYFGETS 280 (706)
Q Consensus 274 --v~~G~~~ 280 (706)
+|.+...
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7777643
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.87 E-value=7.6e-05 Score=81.86 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
++|.+++|.||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999999874
No 499
>PRK08149 ATP synthase SpaL; Validated
Probab=97.86 E-value=1.8e-05 Score=88.10 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=99.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---------cCcCcEEEEecCCC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---------LSFGTAAYVTQDDN 138 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~ 138 (706)
...+++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|++.. ...+++++|.....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35689999 999999999999999999999999999988776444599999987631 11245677766532
Q ss_pred CCCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHH-HHHHHHHhhCCC
Q 005252 139 LIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRR-VSIALEILMRPR 214 (706)
Q Consensus 139 l~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqR-v~Ia~aL~~~p~ 214 (706)
- ++.+-+ .+.+ ..+.|.+...|- |..+ ....|+- -+-+| ++
T Consensus 217 ~----p~~~r~~a~~~a--------------~tiAE~fr~~G~----~Vll---~~DslTr~A~A~rEi~---------- 261 (428)
T PRK08149 217 F----SSVDRCNAALVA--------------TTVAEYFRDQGK----RVVL---FIDSMTRYARALRDVA---------- 261 (428)
T ss_pred C----CHHHHHhHHHHH--------------HHHHHHHHHcCC----CEEE---EccchHHHHHHHHHhH----------
Confidence 2 221111 1110 112222222231 1111 0011110 11111 11
Q ss_pred EEEEeCCCC--CCCHHHHHHHHHHHHHHHh--CC-CEEEEEeCCCchHHHh-hCCeEEEEeCCeEEEEc
Q 005252 215 LLFLDEPTS--GLDSAAAFFVTQTLRCLSR--DG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 215 llllDEPTs--gLD~~~~~~i~~~L~~l~~--~g-~tvI~~~H~p~~~i~~-~~D~vilL~~G~iv~~G 277 (706)
+.++||-+ |-.+.--..+-+++.+..+ .| .|.+.+..-|..++-+ .+|.+.-+-||+++-.-
T Consensus 262 -l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr 329 (428)
T PRK08149 262 -LAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSR 329 (428)
T ss_pred -hhcCCCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcH
Confidence 23456554 5655555566666666543 23 5777776655444332 57788888899998653
No 500
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.86 E-value=0.0002 Score=71.08 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005252 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (706)
Q Consensus 169 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~--Ia~aL~~-~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (706)
.+.+.++..++.- -.+++ ....+|+||+|++. +...+-. +++++ |+|++|......+.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 33458999999977 4444433 34443 99999999999999999887654
Done!