Query 005252
Match_columns 706
No_of_seqs 476 out of 3167
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.2E-48 1.4E-52 418.5 30.0 221 50-283 23-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 4.7E-48 1.6E-52 420.6 30.3 217 51-284 3-223 (381)
3 3tif_A Uncharacterized ABC tra 100.0 8E-48 2.8E-52 395.2 29.0 220 52-282 2-232 (235)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 4.9E-48 1.7E-52 417.7 28.7 217 51-284 4-228 (359)
5 2olj_A Amino acid ABC transpor 100.0 2E-47 6.8E-52 398.3 29.8 216 51-283 24-247 (263)
6 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-48 2.8E-52 403.6 26.8 218 51-284 7-233 (275)
7 2pcj_A ABC transporter, lipopr 100.0 2.6E-47 8.8E-52 388.7 29.6 211 51-279 4-223 (224)
8 1b0u_A Histidine permease; ABC 100.0 1.7E-47 5.8E-52 398.9 28.9 216 51-283 6-241 (262)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.8E-47 1.3E-51 394.7 29.5 217 51-284 15-235 (256)
10 1g6h_A High-affinity branched- 100.0 2.7E-47 9.4E-52 396.4 26.2 217 51-281 7-239 (257)
11 1g29_1 MALK, maltose transport 100.0 1.6E-46 5.6E-51 409.1 31.4 216 51-283 3-228 (372)
12 1ji0_A ABC transporter; ATP bi 100.0 7.9E-47 2.7E-51 389.0 27.2 215 51-283 6-227 (240)
13 2it1_A 362AA long hypothetical 100.0 9.6E-47 3.3E-51 409.0 29.1 216 51-283 3-222 (362)
14 2yyz_A Sugar ABC transporter, 100.0 8E-47 2.8E-51 409.1 28.4 217 51-284 3-223 (359)
15 1z47_A CYSA, putative ABC-tran 100.0 1.1E-46 3.6E-51 407.4 29.1 219 49-283 12-234 (355)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-46 3.7E-51 408.1 27.8 216 51-283 3-229 (353)
17 1v43_A Sugar-binding transport 100.0 1E-46 3.6E-51 410.1 27.5 216 51-283 11-230 (372)
18 3nh6_A ATP-binding cassette SU 100.0 5.7E-47 2E-51 402.4 24.7 247 1-284 19-277 (306)
19 4g1u_C Hemin import ATP-bindin 100.0 1.7E-46 5.7E-51 392.1 27.2 215 50-283 10-236 (266)
20 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-46 1.8E-50 401.4 25.4 211 52-283 2-216 (348)
21 2yz2_A Putative ABC transporte 100.0 9.7E-46 3.3E-50 386.6 25.3 218 51-284 2-227 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 1.1E-45 3.8E-50 380.3 25.1 210 52-283 2-215 (240)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-45 4.6E-50 382.1 25.1 216 51-280 3-229 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-45 3.9E-50 388.4 22.0 220 49-282 19-250 (279)
25 2zu0_C Probable ATP-dependent 100.0 1.5E-44 5.1E-49 377.7 27.3 221 51-284 20-254 (267)
26 2nq2_C Hypothetical ABC transp 100.0 2.9E-44 9.9E-49 372.6 28.8 210 51-282 4-215 (253)
27 2ixe_A Antigen peptide transpo 100.0 7.9E-45 2.7E-49 380.6 21.3 217 51-284 16-245 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 2.3E-44 8E-49 372.1 23.7 214 50-283 6-231 (247)
29 2qi9_C Vitamin B12 import ATP- 100.0 7.4E-44 2.5E-48 368.6 25.3 205 51-282 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 2.4E-44 8.3E-49 371.2 18.2 212 52-283 2-225 (243)
31 4a82_A Cystic fibrosis transme 100.0 2.7E-43 9.3E-48 406.1 26.7 247 2-284 306-564 (578)
32 1sgw_A Putative ABC transporte 100.0 4E-44 1.4E-48 362.4 16.6 203 49-273 8-210 (214)
33 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-43 4E-48 409.6 22.4 247 2-284 308-566 (587)
34 2pjz_A Hypothetical protein ST 100.0 3.8E-43 1.3E-47 366.0 23.5 208 52-283 2-214 (263)
35 2ghi_A Transport protein; mult 100.0 5.7E-43 1.9E-47 364.4 24.5 213 51-283 17-241 (260)
36 2yl4_A ATP-binding cassette SU 100.0 7.6E-43 2.6E-47 403.8 27.2 250 2-283 307-569 (595)
37 3b60_A Lipid A export ATP-bind 100.0 1.3E-42 4.5E-47 400.8 27.9 246 2-284 310-567 (582)
38 3b5x_A Lipid A export ATP-bind 100.0 1.5E-42 5E-47 400.4 27.3 245 2-283 310-566 (582)
39 3qf4_B Uncharacterized ABC tra 100.0 4.6E-43 1.6E-47 405.6 20.1 245 2-284 322-578 (598)
40 2pze_A Cystic fibrosis transme 100.0 2.1E-42 7.3E-47 353.5 22.5 204 51-283 6-217 (229)
41 2cbz_A Multidrug resistance-as 100.0 3.3E-42 1.1E-46 353.9 21.4 207 51-283 3-216 (237)
42 3gd7_A Fusion complex of cysti 100.0 2.8E-42 9.5E-47 377.5 18.6 214 50-284 18-242 (390)
43 4f4c_A Multidrug resistance pr 100.0 7.1E-42 2.4E-46 426.1 21.9 250 2-284 1043-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.3E-41 4.6E-46 423.6 21.6 249 2-284 381-641 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 3.9E-40 1.3E-44 409.5 22.2 251 2-284 353-613 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 9.3E-40 3.2E-44 345.0 18.4 199 51-283 40-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 7.3E-39 2.5E-43 398.1 26.8 251 2-284 996-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 6E-36 2.1E-40 345.1 23.8 206 49-284 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.4E-36 1.9E-40 341.8 20.9 206 49-284 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-35 7.3E-40 336.3 23.4 207 49-283 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 3.3E-34 1.1E-38 330.3 19.8 202 55-284 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 2.5E-33 8.6E-38 334.2 24.7 200 49-284 433-635 (986)
53 3bk7_A ABC transporter ATP-bin 100.0 2.4E-34 8.2E-39 331.8 12.3 192 55-272 95-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-34 9.3E-39 327.8 12.5 197 50-272 19-235 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-33 4.6E-38 330.8 18.2 208 68-283 30-297 (670)
56 2iw3_A Elongation factor 3A; a 100.0 3.2E-33 1.1E-37 333.3 15.2 208 50-278 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 5.3E-32 1.8E-36 317.3 20.3 196 68-283 334-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 3.1E-31 1.1E-35 305.5 11.8 188 68-275 90-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 9.8E-31 3.4E-35 297.9 12.1 173 79-274 22-216 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 1.9E-29 6.6E-34 298.7 18.9 208 50-283 628-941 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 2.6E-29 8.8E-34 297.2 19.5 208 50-283 501-826 (842)
62 3pih_A Uvrabc system protein A 100.0 1.1E-28 3.8E-33 294.0 25.0 200 69-283 597-901 (916)
63 2ygr_A Uvrabc system protein A 100.0 8.2E-29 2.8E-33 294.3 19.7 209 50-284 646-960 (993)
64 4aby_A DNA repair protein RECN 100.0 1.5E-27 5.1E-32 263.5 20.2 204 69-277 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.7E-30 5.8E-35 290.6 -9.1 185 73-282 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.3E-24 1.5E-28 232.6 18.3 83 191-275 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 6.9E-28 2.3E-32 242.5 -13.1 142 67-255 11-159 (208)
68 1e69_A Chromosome segregation 99.9 4E-24 1.4E-28 228.9 13.1 90 191-283 216-312 (322)
69 2v9p_A Replication protein E1; 99.9 7.3E-29 2.5E-33 262.7 -24.6 200 2-288 70-270 (305)
70 4gp7_A Metallophosphoesterase; 99.9 9.6E-25 3.3E-29 212.4 3.8 142 74-254 1-159 (171)
71 1tq4_A IIGP1, interferon-induc 99.9 2.5E-26 8.7E-31 252.8 -11.3 170 69-265 36-247 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 1.9E-23 6.3E-28 205.1 4.4 144 84-275 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 8.8E-26 3E-30 226.2 -17.5 180 68-269 8-202 (207)
74 2vf7_A UVRA2, excinuclease ABC 99.9 2.2E-21 7.5E-26 229.7 16.8 111 165-283 355-474 (842)
75 3b9q_A Chloroplast SRP recepto 99.8 5.7E-23 1.9E-27 218.0 -0.1 172 72-273 90-284 (302)
76 3sop_A Neuronal-specific septi 99.8 8.6E-23 3E-27 213.3 -3.6 145 84-254 4-150 (270)
77 2dpy_A FLII, flagellum-specifi 99.8 2E-23 6.9E-28 232.1 -10.4 189 51-282 131-342 (438)
78 2o5v_A DNA replication and rep 99.8 3.8E-20 1.3E-24 200.5 15.1 85 190-282 260-354 (359)
79 2og2_A Putative signal recogni 99.8 5.7E-22 1.9E-26 214.6 0.1 171 73-273 148-341 (359)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 6E-22 2.1E-26 212.8 0.3 129 71-272 160-291 (330)
81 3qkt_A DNA double-strand break 99.8 1.8E-19 6E-24 194.3 18.7 80 191-272 245-332 (339)
82 1z6g_A Guanylate kinase; struc 99.8 3.6E-24 1.2E-28 216.7 -20.2 151 69-242 10-175 (218)
83 3pih_A Uvrabc system protein A 99.8 6.1E-20 2.1E-24 219.0 11.9 163 98-284 384-560 (916)
84 4ad8_A DNA repair protein RECN 99.8 2.2E-19 7.6E-24 204.2 13.4 78 191-271 393-473 (517)
85 1cr0_A DNA primase/helicase; R 99.8 1.2E-20 4E-25 199.1 1.7 183 69-273 22-237 (296)
86 3aez_A Pantothenate kinase; tr 99.8 1.2E-21 3.9E-26 208.9 -7.7 144 51-227 43-209 (312)
87 1tf7_A KAIC; homohexamer, hexa 99.8 1.9E-19 6.5E-24 205.1 9.2 156 76-272 275-444 (525)
88 2jeo_A Uridine-cytidine kinase 99.8 9.4E-21 3.2E-25 194.6 -1.6 177 67-284 10-187 (245)
89 2o8b_B DNA mismatch repair pro 99.8 4.9E-20 1.7E-24 223.2 2.2 172 51-280 750-938 (1022)
90 2r6f_A Excinuclease ABC subuni 99.8 2.6E-18 8.9E-23 203.9 16.4 135 141-283 450-599 (972)
91 3thx_A DNA mismatch repair pro 99.8 1.4E-18 5E-23 208.0 12.0 152 68-282 648-811 (934)
92 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-21 5.3E-26 222.3 -13.4 169 67-272 23-211 (525)
93 2obl_A ESCN; ATPase, hydrolase 99.7 5.1E-20 1.7E-24 198.9 -1.9 190 51-282 45-253 (347)
94 2ygr_A Uvrabc system protein A 99.7 4.1E-18 1.4E-22 202.9 13.9 137 140-284 466-617 (993)
95 2ehv_A Hypothetical protein PH 99.7 1.3E-19 4.5E-24 184.8 -1.1 167 71-269 18-206 (251)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 6.2E-18 2.1E-22 160.7 10.3 82 190-273 53-142 (148)
97 4a74_A DNA repair and recombin 99.7 4.1E-19 1.4E-23 178.9 0.2 154 77-272 20-201 (231)
98 2eyu_A Twitching motility prot 99.7 1.2E-18 4E-23 181.2 3.4 133 70-270 15-147 (261)
99 3asz_A Uridine kinase; cytidin 99.7 4.1E-20 1.4E-24 184.7 -11.4 145 79-254 3-161 (211)
100 2qnr_A Septin-2, protein NEDD5 99.7 5.1E-19 1.8E-23 187.6 -4.5 162 55-255 2-168 (301)
101 3thx_B DNA mismatch repair pro 99.7 2.9E-17 9.8E-22 196.3 9.9 155 68-275 659-816 (918)
102 1ewq_A DNA mismatch repair pro 99.7 6.3E-18 2.2E-22 199.1 3.4 145 68-276 565-716 (765)
103 1pzn_A RAD51, DNA repair and r 99.7 2.5E-18 8.7E-23 185.9 -3.0 166 71-278 119-309 (349)
104 1rj9_A FTSY, signal recognitio 99.7 7.1E-18 2.4E-22 179.0 0.0 146 81-254 101-258 (304)
105 1wb9_A DNA mismatch repair pro 99.7 1.7E-17 5.8E-22 196.5 2.8 157 68-278 594-752 (800)
106 3szr_A Interferon-induced GTP- 99.6 7.8E-19 2.7E-23 203.1 -9.7 191 51-284 10-237 (608)
107 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.3E-17 1.5E-21 163.8 2.5 171 69-271 9-192 (235)
108 1nlf_A Regulatory protein REPA 99.6 8.4E-16 2.9E-20 160.6 10.9 150 78-254 26-181 (279)
109 2i3b_A HCR-ntpase, human cance 99.6 1.4E-18 4.7E-23 172.0 -10.1 155 82-277 1-169 (189)
110 3jvv_A Twitching mobility prot 99.6 2E-16 6.8E-21 171.3 3.7 127 78-271 119-246 (356)
111 2qag_C Septin-7; cell cycle, c 99.6 3.3E-17 1.1E-21 180.8 -4.4 162 51-253 11-176 (418)
112 1pui_A ENGB, probable GTP-bind 99.6 1.8E-15 6.2E-20 150.0 6.0 175 52-246 4-202 (210)
113 3kta_B Chromosome segregation 99.5 3.4E-14 1.2E-18 138.4 11.3 78 192-272 62-145 (173)
114 1s96_A Guanylate kinase, GMP k 99.5 4.5E-16 1.5E-20 157.5 -2.5 148 76-286 10-162 (219)
115 2cvh_A DNA repair and recombin 99.5 1.3E-14 4.5E-19 144.8 8.1 154 70-271 7-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.5 1.2E-17 4E-22 164.0 -15.3 169 82-282 2-182 (189)
117 1zp6_A Hypothetical protein AT 99.5 2.1E-16 7E-21 155.0 -9.4 152 78-252 5-159 (191)
118 2qag_B Septin-6, protein NEDD5 99.5 1.9E-15 6.3E-20 166.4 -2.9 184 52-253 17-218 (427)
119 1lw7_A Transcriptional regulat 99.4 2.3E-17 7.9E-22 179.4 -19.6 168 70-269 156-342 (365)
120 2gza_A Type IV secretion syste 99.4 1.4E-14 4.9E-19 157.2 1.9 135 72-272 165-303 (361)
121 2ewv_A Twitching motility prot 99.4 1.9E-14 6.5E-19 156.9 2.4 131 70-269 126-257 (372)
122 1nij_A Hypothetical protein YJ 99.4 3.9E-17 1.3E-21 174.4 -20.5 159 83-263 5-197 (318)
123 2rcn_A Probable GTPase ENGC; Y 99.4 9.5E-14 3.3E-18 149.9 5.7 139 71-242 205-346 (358)
124 1htw_A HI0065; nucleotide-bind 99.4 9.2E-16 3.2E-20 147.4 -9.0 79 68-151 19-97 (158)
125 1n0w_A DNA repair protein RAD5 99.4 2E-13 6.8E-18 138.3 7.3 158 72-271 13-209 (243)
126 2f1r_A Molybdopterin-guanine d 99.4 1.8E-15 6.1E-20 147.2 -7.9 137 83-244 3-163 (171)
127 2bbw_A Adenylate kinase 4, AK4 99.4 8.8E-16 3E-20 157.4 -10.8 150 81-243 26-199 (246)
128 3auy_A DNA double-strand break 99.4 1.2E-12 4.1E-17 142.5 12.4 76 191-269 277-359 (371)
129 1odf_A YGR205W, hypothetical 3 99.3 4.2E-14 1.4E-18 149.0 -2.6 128 80-229 29-169 (290)
130 2yhs_A FTSY, cell division pro 99.3 7.4E-14 2.5E-18 155.7 -1.3 152 72-253 283-448 (503)
131 3ec2_A DNA replication protein 99.3 1.7E-13 5.9E-18 133.2 1.4 49 209-257 97-146 (180)
132 2kjq_A DNAA-related protein; s 99.3 7.7E-13 2.6E-17 125.6 5.5 99 69-256 28-127 (149)
133 3e70_C DPA, signal recognition 99.3 1.7E-13 5.9E-18 146.7 0.7 141 80-254 127-279 (328)
134 1udx_A The GTP-binding protein 99.3 8.4E-14 2.9E-18 153.5 -3.4 168 72-265 147-319 (416)
135 2qm8_A GTPase/ATPase; G protei 99.3 9.6E-15 3.3E-19 157.1 -10.8 172 52-242 30-260 (337)
136 1w1w_A Structural maintenance 99.3 5.5E-12 1.9E-16 139.9 10.7 75 193-269 332-410 (430)
137 2yv5_A YJEQ protein; hydrolase 99.3 2E-13 6.7E-18 144.7 -2.1 120 79-208 162-301 (302)
138 1sxj_E Activator 1 40 kDa subu 99.2 6.7E-12 2.3E-16 134.7 6.7 134 85-256 39-176 (354)
139 1p9r_A General secretion pathw 99.2 7.1E-15 2.4E-19 162.3 -17.6 135 69-218 156-315 (418)
140 3c8u_A Fructokinase; YP_612366 99.2 5.3E-14 1.8E-18 140.5 -9.8 164 79-286 19-183 (208)
141 2oap_1 GSPE-2, type II secreti 99.2 3E-14 1E-18 161.2 -13.4 175 69-262 247-457 (511)
142 3lda_A DNA repair protein RAD5 99.2 4.9E-11 1.7E-15 130.9 11.7 159 72-272 167-364 (400)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 4.2E-13 1.4E-17 146.7 -11.4 170 78-281 16-210 (392)
144 1u0l_A Probable GTPase ENGC; p 99.1 6.3E-12 2.2E-16 133.0 -2.2 98 79-186 166-288 (301)
145 1in4_A RUVB, holliday junction 99.0 1E-12 3.5E-17 141.0 -10.3 167 67-263 29-210 (334)
146 1t9h_A YLOQ, probable GTPase E 99.0 3.5E-11 1.2E-15 127.4 0.0 116 78-202 169-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.0 1.6E-13 5.6E-18 136.2 -18.5 56 205-269 116-172 (198)
148 2dr3_A UPF0273 protein PH0284; 99.0 1.9E-09 6.7E-14 108.9 10.6 68 203-270 117-196 (247)
149 2x8a_A Nuclear valosin-contain 99.0 3.3E-13 1.1E-17 141.0 -17.9 140 68-236 32-189 (274)
150 1vma_A Cell division protein F 98.9 5.8E-10 2E-14 118.2 3.9 113 75-241 97-212 (306)
151 2r6a_A DNAB helicase, replicat 98.9 2.4E-09 8.1E-14 119.6 8.8 174 69-273 190-401 (454)
152 2ius_A DNA translocase FTSK; n 98.8 1.1E-10 3.8E-15 131.4 -4.1 165 74-255 159-343 (512)
153 1ls1_A Signal recognition part 98.8 6.2E-09 2.1E-13 109.7 9.0 118 73-240 91-209 (295)
154 3k1j_A LON protease, ATP-depen 98.8 1E-10 3.5E-15 135.3 -6.4 161 67-239 45-227 (604)
155 1sq5_A Pantothenate kinase; P- 98.8 2.4E-10 8.2E-15 121.2 -3.1 94 52-156 38-156 (308)
156 3euj_A Chromosome partition pr 98.8 1.7E-09 5.8E-14 120.9 3.5 51 69-123 17-67 (483)
157 2px0_A Flagellar biosynthesis 98.8 6.2E-09 2.1E-13 109.7 7.4 141 80-276 103-247 (296)
158 2zr9_A Protein RECA, recombina 98.8 6.5E-09 2.2E-13 112.1 7.0 154 71-278 48-237 (349)
159 1iy2_A ATP-dependent metallopr 98.7 7.7E-12 2.6E-16 130.3 -17.6 122 69-215 62-190 (278)
160 1ixz_A ATP-dependent metallopr 98.7 1.1E-11 3.7E-16 127.2 -17.4 122 69-215 38-166 (254)
161 1oix_A RAS-related protein RAB 98.7 3.6E-09 1.2E-13 103.5 1.1 38 201-240 152-189 (191)
162 3tr0_A Guanylate kinase, GMP k 98.7 1.3E-09 4.4E-14 107.4 -2.4 67 76-149 1-72 (205)
163 1qhl_A Protein (cell division 98.5 4.1E-09 1.4E-13 106.8 -3.7 59 49-123 7-65 (227)
164 2qtf_A Protein HFLX, GTP-bindi 98.5 9.5E-08 3.2E-12 103.6 6.1 149 84-242 181-353 (364)
165 3lnc_A Guanylate kinase, GMP k 98.4 4.8E-08 1.6E-12 98.6 1.6 39 69-107 14-53 (231)
166 2ce7_A Cell division protein F 98.4 2.6E-07 8.9E-12 103.4 7.5 59 197-255 93-165 (476)
167 3hr8_A Protein RECA; alpha and 98.4 7.2E-08 2.5E-12 104.0 2.7 37 71-107 48-86 (356)
168 2f9l_A RAB11B, member RAS onco 98.4 1.2E-07 4.1E-12 92.9 3.0 37 203-241 130-166 (199)
169 4eun_A Thermoresistant glucoki 98.3 2E-08 6.7E-13 99.2 -4.4 41 76-123 23-63 (200)
170 2xau_A PRE-mRNA-splicing facto 98.3 6.4E-07 2.2E-11 106.3 7.7 73 192-265 188-262 (773)
171 4a1f_A DNAB helicase, replicat 98.2 5.1E-07 1.7E-11 96.7 4.3 129 69-251 33-163 (338)
172 3nwj_A ATSK2; P loop, shikimat 98.2 9.9E-08 3.4E-12 98.1 -1.6 53 51-107 17-73 (250)
173 2e87_A Hypothetical protein PH 98.1 3.1E-06 1.1E-10 91.2 7.9 60 193-254 230-292 (357)
174 3uie_A Adenylyl-sulfate kinase 98.1 1.5E-07 5.1E-12 92.8 -3.4 52 68-123 11-64 (200)
175 3kta_A Chromosome segregation 98.1 2.7E-06 9.3E-11 82.0 5.2 38 70-108 13-52 (182)
176 1zu4_A FTSY; GTPase, signal re 98.0 8E-07 2.7E-11 94.6 0.5 48 72-122 95-142 (320)
177 2dhr_A FTSH; AAA+ protein, hex 98.0 2.8E-08 9.6E-13 111.9 -11.5 127 69-222 53-186 (499)
178 3a00_A Guanylate kinase, GMP k 98.0 1.2E-06 4E-11 85.4 1.4 27 82-108 1-27 (186)
179 3vaa_A Shikimate kinase, SK; s 98.0 2.3E-06 7.9E-11 84.2 3.4 40 67-106 10-49 (199)
180 1fnn_A CDC6P, cell division co 98.0 1.8E-05 6E-10 85.1 10.2 43 211-254 124-169 (389)
181 2j41_A Guanylate kinase; GMP, 97.9 4.7E-06 1.6E-10 81.7 4.4 31 78-108 2-32 (207)
182 4e22_A Cytidylate kinase; P-lo 97.9 6.1E-07 2.1E-11 92.0 -2.3 61 71-137 19-96 (252)
183 2z4s_A Chromosomal replication 97.9 2.9E-06 9.9E-11 94.2 2.7 70 211-280 193-264 (440)
184 3b9p_A CG5977-PA, isoform A; A 97.9 6.6E-05 2.3E-09 78.0 12.7 73 196-268 97-186 (297)
185 1kgd_A CASK, peripheral plasma 97.9 3.6E-06 1.2E-10 81.5 2.8 37 80-118 3-39 (180)
186 3t34_A Dynamin-related protein 97.9 2.4E-05 8.2E-10 84.3 9.4 57 195-252 155-212 (360)
187 1jjv_A Dephospho-COA kinase; P 97.9 5.8E-06 2E-10 81.4 3.6 70 196-269 61-131 (206)
188 1v5w_A DMC1, meiotic recombina 97.9 6.1E-05 2.1E-09 80.7 11.6 139 77-254 117-274 (343)
189 3bh0_A DNAB-like replicative h 97.8 1.6E-05 5.3E-10 84.3 6.3 132 69-252 55-189 (315)
190 2z43_A DNA repair and recombin 97.8 7.2E-05 2.5E-09 79.4 11.3 143 72-253 96-257 (324)
191 2vp4_A Deoxynucleoside kinase; 97.8 4.8E-06 1.6E-10 84.0 1.9 38 78-122 16-53 (230)
192 1ega_A Protein (GTP-binding pr 97.7 3.7E-05 1.3E-09 80.9 6.9 153 81-266 7-170 (301)
193 3tau_A Guanylate kinase, GMP k 97.7 1.6E-05 5.6E-10 78.7 3.9 29 80-108 6-34 (208)
194 2dy1_A Elongation factor G; tr 97.7 1.1E-05 3.8E-10 94.1 1.8 129 76-254 3-136 (665)
195 2qt1_A Nicotinamide riboside k 97.6 2.6E-05 8.9E-10 76.8 4.1 29 78-106 17-45 (207)
196 1svm_A Large T antigen; AAA+ f 97.6 8E-06 2.7E-10 88.8 0.1 44 69-118 156-199 (377)
197 3ney_A 55 kDa erythrocyte memb 97.6 1.5E-05 5.3E-10 78.7 2.1 29 79-107 16-44 (197)
198 1rz3_A Hypothetical protein rb 97.6 9.5E-06 3.2E-10 80.0 0.4 40 79-121 19-58 (201)
199 1knq_A Gluconate kinase; ALFA/ 97.6 1.8E-05 6.2E-10 75.6 2.1 35 80-121 6-40 (175)
200 3tqc_A Pantothenate kinase; bi 97.6 7.3E-06 2.5E-10 87.1 -1.4 41 68-108 72-118 (321)
201 3kl4_A SRP54, signal recogniti 97.5 0.00014 5E-09 80.1 8.7 28 81-108 96-123 (433)
202 3cr8_A Sulfate adenylyltranfer 97.5 1.9E-05 6.7E-10 89.8 0.9 42 78-122 365-408 (552)
203 3cf0_A Transitional endoplasmi 97.5 0.00013 4.5E-09 76.5 7.0 29 78-106 45-73 (301)
204 2qby_A CDC6 homolog 1, cell di 97.5 2.5E-05 8.6E-10 83.5 1.3 28 80-107 43-70 (386)
205 1kag_A SKI, shikimate kinase I 97.5 4.1E-05 1.4E-09 72.8 2.6 27 81-107 3-29 (173)
206 3llm_A ATP-dependent RNA helic 97.5 2.7E-05 9.2E-10 78.6 1.4 67 196-264 162-229 (235)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.6E-05 2.6E-09 70.2 3.9 30 73-103 15-44 (149)
208 2q6t_A DNAB replication FORK h 97.4 0.00069 2.4E-08 75.0 11.9 171 69-269 187-396 (444)
209 1lv7_A FTSH; alpha/beta domain 97.4 0.00071 2.4E-08 68.7 10.5 35 71-107 36-70 (257)
210 1w1w_A Structural maintenance 97.3 0.0001 3.5E-09 81.3 3.3 33 77-109 21-53 (430)
211 1ypw_A Transitional endoplasmi 97.3 0.0002 6.9E-09 85.3 5.8 30 78-107 234-263 (806)
212 2w58_A DNAI, primosome compone 97.3 0.0003 1E-08 68.6 6.2 24 83-106 55-78 (202)
213 2pez_A Bifunctional 3'-phospho 97.2 9E-05 3.1E-09 71.1 1.2 38 80-121 3-42 (179)
214 1l8q_A Chromosomal replication 97.2 0.00058 2E-08 72.0 7.6 47 210-256 96-143 (324)
215 2p67_A LAO/AO transport system 97.1 3.4E-05 1.1E-09 82.7 -2.2 50 68-120 42-91 (341)
216 3ice_A Transcription terminati 97.1 4.7E-05 1.6E-09 82.3 -1.7 52 51-106 133-198 (422)
217 4eaq_A DTMP kinase, thymidylat 97.1 0.00018 6.3E-09 72.5 2.4 37 72-108 13-52 (229)
218 3h4m_A Proteasome-activating n 97.0 0.001 3.4E-08 68.5 7.6 28 79-106 48-75 (285)
219 2gj8_A MNME, tRNA modification 97.0 0.00079 2.7E-08 64.0 6.1 27 80-106 2-28 (172)
220 1u94_A RECA protein, recombina 97.0 0.0062 2.1E-07 65.5 13.7 35 71-105 50-86 (356)
221 3qks_A DNA double-strand break 97.0 0.00039 1.3E-08 68.7 3.9 30 73-103 15-44 (203)
222 2b8t_A Thymidine kinase; deoxy 97.0 0.0011 3.9E-08 66.5 7.3 53 212-269 89-150 (223)
223 2www_A Methylmalonic aciduria 97.0 0.00016 5.5E-09 77.7 1.0 39 80-121 72-110 (349)
224 3lxx_A GTPase IMAP family memb 96.9 0.0056 1.9E-07 61.3 11.8 43 211-253 111-155 (239)
225 3m6a_A ATP-dependent protease 96.9 0.00014 4.9E-09 82.7 -0.1 48 69-120 96-143 (543)
226 3bos_A Putative DNA replicatio 96.9 0.00078 2.7E-08 66.7 5.4 45 211-255 103-149 (242)
227 1cke_A CK, MSSA, protein (cyti 96.9 0.00042 1.4E-08 68.7 3.4 37 82-118 5-41 (227)
228 3bgw_A DNAB-like replicative h 96.9 0.0011 3.8E-08 73.5 6.9 35 70-104 185-219 (444)
229 1m7g_A Adenylylsulfate kinase; 96.9 0.00022 7.5E-09 70.5 1.1 40 79-121 22-63 (211)
230 2i1q_A DNA repair and recombin 96.9 0.0043 1.5E-07 65.4 11.1 34 71-104 86-120 (322)
231 1mky_A Probable GTP-binding pr 96.9 0.00092 3.1E-08 73.9 6.0 40 83-122 181-229 (439)
232 3d8b_A Fidgetin-like protein 1 96.8 0.0051 1.7E-07 66.0 11.5 27 80-106 115-141 (357)
233 2qor_A Guanylate kinase; phosp 96.8 0.00052 1.8E-08 67.4 3.1 28 79-106 9-36 (204)
234 1m2o_B GTP-binding protein SAR 96.8 0.0009 3.1E-08 64.6 4.6 36 69-105 11-46 (190)
235 1np6_A Molybdopterin-guanine d 96.8 0.00055 1.9E-08 66.1 2.9 39 83-121 7-45 (174)
236 1y63_A LMAJ004144AAA protein; 96.7 0.00067 2.3E-08 65.5 2.9 32 74-105 2-33 (184)
237 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.015 5.1E-07 61.4 13.5 28 79-106 42-69 (322)
238 1f6b_A SAR1; gtpases, N-termin 96.6 0.00041 1.4E-08 67.6 0.8 37 68-105 12-48 (198)
239 3auy_A DNA double-strand break 96.6 0.0015 5.1E-08 70.5 5.4 32 71-103 15-46 (371)
240 2v1u_A Cell division control p 96.6 0.0014 4.7E-08 69.9 4.7 27 80-106 42-68 (387)
241 2if2_A Dephospho-COA kinase; a 96.5 0.00096 3.3E-08 65.1 2.9 21 84-104 3-23 (204)
242 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0081 2.8E-07 60.5 9.9 27 80-106 37-63 (262)
243 2wji_A Ferrous iron transport 96.5 0.0032 1.1E-07 59.0 6.4 23 84-106 5-27 (165)
244 2yvu_A Probable adenylyl-sulfa 96.5 0.00072 2.5E-08 65.1 1.7 30 79-108 10-39 (186)
245 2ffh_A Protein (FFH); SRP54, s 96.5 0.00059 2E-08 75.1 1.1 45 73-122 91-135 (425)
246 2qag_A Septin-2, protein NEDD5 96.5 0.00028 9.5E-09 76.1 -1.7 46 51-107 17-62 (361)
247 1q57_A DNA primase/helicase; d 96.4 0.027 9.3E-07 63.1 14.1 35 70-104 230-264 (503)
248 2r8r_A Sensor protein; KDPD, P 96.4 0.0022 7.4E-08 64.5 4.4 73 209-288 81-175 (228)
249 2p5t_B PEZT; postsegregational 96.4 0.00082 2.8E-08 68.5 1.3 45 71-121 22-66 (253)
250 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00044 1.5E-08 74.1 -1.1 39 69-107 9-49 (359)
251 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0016 5.3E-08 71.0 3.0 46 76-121 16-69 (396)
252 3t61_A Gluconokinase; PSI-biol 96.3 0.0017 5.6E-08 63.4 2.8 25 82-106 18-42 (202)
253 3cm0_A Adenylate kinase; ATP-b 96.2 0.0021 7.3E-08 61.4 3.4 26 80-105 2-27 (186)
254 2wjg_A FEOB, ferrous iron tran 96.2 0.0031 1.1E-07 60.0 4.5 22 84-105 9-30 (188)
255 1qhx_A CPT, protein (chloramph 96.2 0.0026 8.9E-08 60.4 3.6 26 82-107 3-28 (178)
256 1sxj_C Activator 1 40 kDa subu 96.2 0.00056 1.9E-08 72.7 -1.3 41 68-108 30-72 (340)
257 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.2E-08 60.0 3.3 23 84-106 3-25 (173)
258 1j8m_F SRP54, signal recogniti 96.1 0.00051 1.7E-08 72.1 -1.9 45 73-121 89-134 (297)
259 2zej_A Dardarin, leucine-rich 96.0 0.0029 9.9E-08 60.5 3.0 23 84-106 4-26 (184)
260 1q3t_A Cytidylate kinase; nucl 96.0 0.0033 1.1E-07 63.1 3.4 29 78-106 12-40 (236)
261 1kht_A Adenylate kinase; phosp 96.0 0.0037 1.3E-07 59.8 3.5 25 82-106 3-27 (192)
262 3r20_A Cytidylate kinase; stru 95.9 0.0036 1.2E-07 63.3 3.4 25 82-106 9-33 (233)
263 2ze6_A Isopentenyl transferase 95.8 0.0041 1.4E-07 63.4 3.3 24 83-106 2-25 (253)
264 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.017 5.7E-07 61.1 7.9 28 77-104 118-145 (331)
265 2rhm_A Putative kinase; P-loop 95.8 0.0045 1.5E-07 59.4 3.3 27 80-106 3-29 (193)
266 1xx6_A Thymidine kinase; NESG, 95.8 0.012 4.1E-07 57.5 6.4 53 212-269 81-142 (191)
267 3n70_A Transport activator; si 95.8 0.02 6.8E-07 52.8 7.6 43 212-256 76-118 (145)
268 1xp8_A RECA protein, recombina 95.8 0.04 1.4E-06 59.3 11.0 28 77-104 69-96 (366)
269 1ex7_A Guanylate kinase; subst 95.7 0.0048 1.6E-07 60.2 3.2 23 84-106 3-25 (186)
270 3lw7_A Adenylate kinase relate 95.7 0.0052 1.8E-07 57.4 3.3 19 84-102 3-21 (179)
271 2v54_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 59.2 3.7 26 81-106 3-28 (204)
272 1vht_A Dephospho-COA kinase; s 95.7 0.0056 1.9E-07 60.3 3.6 24 81-104 3-26 (218)
273 2qp9_X Vacuolar protein sortin 95.7 0.037 1.3E-06 59.2 10.2 27 80-106 82-108 (355)
274 3trf_A Shikimate kinase, SK; a 95.7 0.0057 2E-07 58.4 3.5 26 81-106 4-29 (185)
275 3io5_A Recombination and repai 95.6 0.026 8.9E-07 59.5 8.5 26 77-103 24-50 (333)
276 2jaq_A Deoxyguanosine kinase; 95.6 0.006 2.1E-07 58.9 3.4 23 84-106 2-24 (205)
277 2plr_A DTMP kinase, probable t 95.6 0.0068 2.3E-07 58.9 3.8 27 81-107 3-29 (213)
278 3cmw_A Protein RECA, recombina 95.6 0.068 2.3E-06 67.8 13.6 29 78-106 728-756 (1706)
279 3iij_A Coilin-interacting nucl 95.6 0.0055 1.9E-07 58.4 3.0 25 81-105 10-34 (180)
280 1xjc_A MOBB protein homolog; s 95.6 0.0047 1.6E-07 59.3 2.4 25 83-107 5-29 (169)
281 2j9r_A Thymidine kinase; TK1, 95.5 0.024 8.3E-07 56.3 7.5 53 212-269 101-162 (214)
282 1ly1_A Polynucleotide kinase; 95.5 0.0076 2.6E-07 56.9 3.5 22 83-104 3-24 (181)
283 2wwf_A Thymidilate kinase, put 95.4 0.0075 2.6E-07 58.8 3.4 27 80-106 8-34 (212)
284 1gtv_A TMK, thymidylate kinase 95.4 0.0038 1.3E-07 61.1 1.2 24 84-107 2-25 (214)
285 1uf9_A TT1252 protein; P-loop, 95.4 0.0078 2.7E-07 58.2 3.4 24 82-105 8-31 (203)
286 1via_A Shikimate kinase; struc 95.4 0.0075 2.6E-07 57.3 3.2 23 84-106 6-28 (175)
287 2c95_A Adenylate kinase 1; tra 95.4 0.0077 2.6E-07 57.9 3.2 27 80-106 7-33 (196)
288 1gvn_B Zeta; postsegregational 95.4 0.0073 2.5E-07 62.8 3.2 36 80-120 31-66 (287)
289 2orv_A Thymidine kinase; TP4A 95.3 0.073 2.5E-06 53.5 10.1 53 211-269 89-150 (234)
290 4dcu_A GTP-binding protein ENG 95.3 0.023 7.8E-07 63.0 7.1 52 198-253 88-140 (456)
291 1nn5_A Similar to deoxythymidy 95.3 0.0088 3E-07 58.3 3.3 27 80-106 7-33 (215)
292 1nks_A Adenylate kinase; therm 95.2 0.0086 3E-07 57.1 3.1 23 84-106 3-25 (194)
293 1ko7_A HPR kinase/phosphatase; 95.2 0.013 4.6E-07 61.6 4.7 36 69-105 132-167 (314)
294 3vfd_A Spastin; ATPase, microt 95.2 0.12 4.1E-06 55.7 12.5 27 80-106 146-172 (389)
295 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.6E-07 56.6 3.7 24 82-105 3-26 (196)
296 3k53_A Ferrous iron transport 95.2 0.0084 2.9E-07 61.5 2.9 23 84-106 5-27 (271)
297 4b4t_L 26S protease subunit RP 95.1 0.089 3.1E-06 57.9 11.0 70 206-281 268-354 (437)
298 2bwj_A Adenylate kinase 5; pho 95.0 0.0095 3.2E-07 57.3 2.6 27 80-106 10-36 (199)
299 2ged_A SR-beta, signal recogni 95.0 0.011 3.7E-07 56.5 3.0 24 83-106 49-72 (193)
300 3co5_A Putative two-component 95.0 0.034 1.2E-06 51.1 6.3 42 212-254 75-116 (143)
301 4b4t_J 26S protease regulatory 95.0 0.13 4.4E-06 56.0 11.7 28 79-106 179-206 (405)
302 1z2a_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.6 2.9 23 84-106 7-29 (168)
303 2nzj_A GTP-binding protein REM 94.9 0.013 4.4E-07 54.6 3.2 23 84-106 6-28 (175)
304 2z0h_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 56.3 3.3 23 84-106 2-24 (197)
305 2erx_A GTP-binding protein DI- 94.9 0.013 4.5E-07 54.2 3.2 22 84-105 5-26 (172)
306 3ake_A Cytidylate kinase; CMP 94.9 0.012 4.2E-07 57.0 3.1 23 84-106 4-26 (208)
307 3ihw_A Centg3; RAS, centaurin, 94.9 0.026 8.8E-07 53.9 5.3 22 84-105 22-43 (184)
308 1aky_A Adenylate kinase; ATP:A 94.9 0.015 5E-07 57.4 3.6 26 81-106 3-28 (220)
309 3q72_A GTP-binding protein RAD 94.9 0.011 3.7E-07 54.7 2.5 23 84-106 4-26 (166)
310 1kao_A RAP2A; GTP-binding prot 94.8 0.013 4.4E-07 53.9 3.0 23 84-106 5-27 (167)
311 2dyk_A GTP-binding protein; GT 94.8 0.013 4.4E-07 53.8 3.0 23 84-106 3-25 (161)
312 1u8z_A RAS-related protein RAL 94.8 0.013 4.5E-07 53.9 2.9 23 84-106 6-28 (168)
313 2ce2_X GTPase HRAS; signaling 94.8 0.012 4.2E-07 53.9 2.6 23 84-106 5-27 (166)
314 3q85_A GTP-binding protein REM 94.8 0.015 5E-07 54.0 3.2 23 84-106 4-26 (169)
315 2vli_A Antibiotic resistance p 94.8 0.011 3.7E-07 56.2 2.3 26 81-106 4-29 (183)
316 1z0j_A RAB-22, RAS-related pro 94.7 0.014 4.9E-07 53.9 3.0 23 84-106 8-30 (170)
317 1z08_A RAS-related protein RAB 94.7 0.014 4.9E-07 54.0 3.0 23 84-106 8-30 (170)
318 1jal_A YCHF protein; nucleotid 94.7 0.021 7.2E-07 61.4 4.6 39 82-120 2-48 (363)
319 3tw8_B RAS-related protein RAB 94.7 0.014 4.7E-07 54.6 2.8 23 84-106 11-33 (181)
320 1zd8_A GTP:AMP phosphotransfer 94.7 0.015 5.2E-07 57.7 3.2 27 80-106 5-31 (227)
321 1ek0_A Protein (GTP-binding pr 94.7 0.014 4.9E-07 53.8 2.9 23 84-106 5-27 (170)
322 4ag6_A VIRB4 ATPase, type IV s 94.7 0.0095 3.3E-07 64.5 1.8 45 212-256 262-309 (392)
323 1g16_A RAS-related protein SEC 94.6 0.014 4.7E-07 54.1 2.6 23 84-106 5-27 (170)
324 3cmw_A Protein RECA, recombina 94.6 0.18 6.3E-06 64.0 13.4 154 70-277 369-558 (1706)
325 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.015 5.2E-07 54.3 3.0 23 84-106 9-31 (177)
326 1c1y_A RAS-related protein RAP 94.6 0.015 5.2E-07 53.6 2.9 23 84-106 5-27 (167)
327 1ky3_A GTP-binding protein YPT 94.6 0.015 5.2E-07 54.4 3.0 23 84-106 10-32 (182)
328 3fb4_A Adenylate kinase; psych 94.6 0.017 5.8E-07 56.6 3.3 23 84-106 2-24 (216)
329 2lkc_A Translation initiation 94.6 0.02 6.8E-07 53.6 3.7 25 82-106 8-32 (178)
330 2cdn_A Adenylate kinase; phosp 94.6 0.019 6.5E-07 55.7 3.7 25 82-106 20-44 (201)
331 2pbr_A DTMP kinase, thymidylat 94.6 0.018 6.1E-07 55.0 3.4 23 84-106 2-24 (195)
332 1fzq_A ADP-ribosylation factor 94.6 0.014 4.7E-07 55.6 2.5 22 84-105 18-39 (181)
333 3b1v_A Ferrous iron uptake tra 94.6 0.024 8.2E-07 58.5 4.5 23 84-106 5-27 (272)
334 1svi_A GTP-binding protein YSX 94.6 0.015 5E-07 55.6 2.7 23 84-106 25-47 (195)
335 3lxw_A GTPase IMAP family memb 94.5 0.017 5.8E-07 58.5 3.2 24 84-107 23-46 (247)
336 1e6c_A Shikimate kinase; phosp 94.5 0.016 5.5E-07 54.4 2.8 24 83-106 3-26 (173)
337 2fn4_A P23, RAS-related protei 94.5 0.015 5.2E-07 54.3 2.7 23 84-106 11-33 (181)
338 1ukz_A Uridylate kinase; trans 94.5 0.02 6.8E-07 55.5 3.5 25 82-106 15-39 (203)
339 1zuh_A Shikimate kinase; alpha 94.5 0.02 6.9E-07 53.8 3.4 24 83-106 8-31 (168)
340 3pqc_A Probable GTP-binding pr 94.5 0.016 5.4E-07 55.1 2.7 23 84-106 25-47 (195)
341 1zak_A Adenylate kinase; ATP:A 94.5 0.016 5.4E-07 57.3 2.7 26 81-106 4-29 (222)
342 1r2q_A RAS-related protein RAB 94.4 0.018 6.1E-07 53.2 2.9 22 84-105 8-29 (170)
343 3clv_A RAB5 protein, putative; 94.4 0.018 6.1E-07 54.8 3.0 23 84-106 9-31 (208)
344 2pt5_A Shikimate kinase, SK; a 94.4 0.021 7.3E-07 53.4 3.4 23 84-106 2-24 (168)
345 4dsu_A GTPase KRAS, isoform 2B 94.4 0.018 6.3E-07 54.3 3.0 23 84-106 6-28 (189)
346 2hxs_A RAB-26, RAS-related pro 94.4 0.02 6.9E-07 53.5 3.2 23 84-106 8-30 (178)
347 2cxx_A Probable GTP-binding pr 94.4 0.017 5.7E-07 54.7 2.7 22 85-106 4-25 (190)
348 3dl0_A Adenylate kinase; phosp 94.4 0.02 6.9E-07 56.1 3.3 23 84-106 2-24 (216)
349 1qf9_A UMP/CMP kinase, protein 94.4 0.021 7.1E-07 54.4 3.3 24 82-105 6-29 (194)
350 1upt_A ARL1, ADP-ribosylation 94.4 0.019 6.4E-07 53.3 2.9 23 84-106 9-31 (171)
351 2qmh_A HPR kinase/phosphorylas 94.4 0.032 1.1E-06 55.0 4.6 36 69-105 22-57 (205)
352 2iyv_A Shikimate kinase, SK; t 94.4 0.017 5.8E-07 55.1 2.7 24 83-106 3-26 (184)
353 3bc1_A RAS-related protein RAB 94.3 0.019 6.5E-07 54.3 2.9 23 84-106 13-35 (195)
354 1r8s_A ADP-ribosylation factor 94.3 0.02 6.8E-07 52.8 2.9 21 85-105 3-23 (164)
355 2oil_A CATX-8, RAS-related pro 94.3 0.019 6.6E-07 54.7 2.9 23 84-106 27-49 (193)
356 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.024 8.2E-07 57.8 3.8 26 81-106 3-28 (260)
357 2y8e_A RAB-protein 6, GH09086P 94.2 0.019 6.6E-07 53.5 2.6 23 84-106 16-38 (179)
358 3tlx_A Adenylate kinase 2; str 94.2 0.026 8.7E-07 57.0 3.7 25 81-105 28-52 (243)
359 3dm5_A SRP54, signal recogniti 94.2 0.33 1.1E-05 53.4 12.8 27 81-107 99-125 (443)
360 2g6b_A RAS-related protein RAB 94.2 0.022 7.4E-07 53.4 2.9 23 84-106 12-34 (180)
361 2a9k_A RAS-related protein RAL 94.2 0.022 7.4E-07 53.6 2.9 23 84-106 20-42 (187)
362 1z0f_A RAB14, member RAS oncog 94.2 0.022 7.5E-07 53.1 2.9 23 84-106 17-39 (179)
363 3t1o_A Gliding protein MGLA; G 94.1 0.024 8.1E-07 53.8 3.1 25 84-108 16-40 (198)
364 1moz_A ARL1, ADP-ribosylation 94.1 0.014 4.9E-07 54.9 1.5 23 82-104 18-40 (183)
365 3cmu_A Protein RECA, recombina 94.1 0.083 2.8E-06 67.9 8.8 150 71-274 370-555 (2050)
366 1uj2_A Uridine-cytidine kinase 94.1 0.024 8.4E-07 57.3 3.3 24 83-106 23-46 (252)
367 2efe_B Small GTP-binding prote 94.1 0.023 8E-07 53.2 3.0 23 84-106 14-36 (181)
368 3con_A GTPase NRAS; structural 94.1 0.023 7.8E-07 54.0 2.9 23 84-106 23-45 (190)
369 3t5d_A Septin-7; GTP-binding p 94.1 0.02 6.7E-07 58.8 2.6 23 84-106 10-32 (274)
370 1wf3_A GTP-binding protein; GT 94.1 0.025 8.6E-07 59.2 3.4 23 84-106 9-31 (301)
371 2grj_A Dephospho-COA kinase; T 94.1 0.026 9E-07 55.1 3.3 24 82-105 12-35 (192)
372 1nrj_B SR-beta, signal recogni 94.0 0.024 8.4E-07 55.2 2.9 23 84-106 14-36 (218)
373 2bov_A RAla, RAS-related prote 94.0 0.025 8.5E-07 54.3 2.9 23 84-106 16-38 (206)
374 2bme_A RAB4A, RAS-related prot 94.0 0.023 7.9E-07 53.6 2.6 23 84-106 12-34 (186)
375 1vg8_A RAS-related protein RAB 93.9 0.026 8.8E-07 54.4 3.0 23 84-106 10-32 (207)
376 3iev_A GTP-binding protein ERA 93.9 0.028 9.5E-07 58.9 3.4 23 84-106 12-34 (308)
377 1ksh_A ARF-like protein 2; sma 93.9 0.026 9E-07 53.4 3.0 26 81-106 17-42 (186)
378 3a8t_A Adenylate isopentenyltr 93.9 0.035 1.2E-06 59.0 4.2 26 81-106 39-64 (339)
379 2gf9_A RAS-related protein RAB 93.9 0.026 8.9E-07 53.7 2.9 23 84-106 24-46 (189)
380 3iby_A Ferrous iron transport 93.9 0.025 8.4E-07 57.7 2.9 23 84-106 3-25 (256)
381 3cbq_A GTP-binding protein REM 93.9 0.021 7.2E-07 55.1 2.3 22 84-105 25-46 (195)
382 1jbk_A CLPB protein; beta barr 93.9 0.033 1.1E-06 52.3 3.6 27 80-106 41-67 (195)
383 3tkl_A RAS-related protein RAB 93.9 0.027 9.2E-07 53.6 2.9 23 84-106 18-40 (196)
384 2gf0_A GTP-binding protein DI- 93.8 0.025 8.7E-07 53.9 2.7 22 84-105 10-31 (199)
385 3kkq_A RAS-related protein M-R 93.8 0.028 9.6E-07 52.9 2.9 23 84-106 20-42 (183)
386 2xtp_A GTPase IMAP family memb 93.8 0.027 9.3E-07 57.0 2.9 23 84-106 24-46 (260)
387 2fg5_A RAB-22B, RAS-related pr 93.8 0.026 8.9E-07 54.0 2.7 23 84-106 25-47 (192)
388 1m7b_A RND3/RHOE small GTP-bin 93.8 0.026 8.9E-07 53.5 2.6 23 84-106 9-31 (184)
389 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.029 9.9E-07 52.7 2.9 22 84-105 7-28 (186)
390 1zbd_A Rabphilin-3A; G protein 93.8 0.031 1.1E-06 53.7 3.2 23 84-106 10-32 (203)
391 1a7j_A Phosphoribulokinase; tr 93.8 0.016 5.4E-07 60.4 1.1 26 81-106 4-29 (290)
392 2dby_A GTP-binding protein; GD 93.7 0.027 9.2E-07 60.7 2.9 21 85-105 4-24 (368)
393 1z06_A RAS-related protein RAB 93.7 0.03 1E-06 53.2 3.0 23 84-106 22-44 (189)
394 2xb4_A Adenylate kinase; ATP-b 93.7 0.034 1.2E-06 55.2 3.4 23 84-106 2-24 (223)
395 2f6r_A COA synthase, bifunctio 93.7 0.03 1E-06 57.9 3.1 23 82-104 75-97 (281)
396 2il1_A RAB12; G-protein, GDP, 93.7 0.029 9.8E-07 53.8 2.8 23 84-106 28-50 (192)
397 4dhe_A Probable GTP-binding pr 93.7 0.017 5.9E-07 56.5 1.2 23 84-106 31-53 (223)
398 2cjw_A GTP-binding protein GEM 93.7 0.03 1E-06 53.9 2.9 22 84-105 8-29 (192)
399 4fcw_A Chaperone protein CLPB; 93.7 0.034 1.2E-06 57.5 3.5 27 82-108 47-73 (311)
400 3be4_A Adenylate kinase; malar 93.6 0.034 1.2E-06 54.8 3.2 26 81-106 4-29 (217)
401 2wsm_A Hydrogenase expression/ 93.6 0.031 1.1E-06 54.7 2.9 24 83-106 31-54 (221)
402 3a1s_A Iron(II) transport prot 93.6 0.034 1.1E-06 56.8 3.2 23 84-106 7-29 (258)
403 4edh_A DTMP kinase, thymidylat 93.6 0.041 1.4E-06 54.6 3.7 28 80-107 4-31 (213)
404 1jwy_B Dynamin A GTPase domain 93.6 0.031 1.1E-06 58.1 3.0 23 84-106 26-48 (315)
405 3oes_A GTPase rhebl1; small GT 93.6 0.029 1E-06 54.1 2.6 23 84-106 26-48 (201)
406 2a5j_A RAS-related protein RAB 93.6 0.033 1.1E-06 53.2 2.9 23 84-106 23-45 (191)
407 3bwd_D RAC-like GTP-binding pr 93.6 0.033 1.1E-06 52.2 2.9 22 84-105 10-31 (182)
408 2qu8_A Putative nucleolar GTP- 93.5 0.033 1.1E-06 55.1 3.0 22 84-105 31-52 (228)
409 1zj6_A ADP-ribosylation factor 93.5 0.033 1.1E-06 52.8 2.9 23 83-105 17-39 (187)
410 3i8s_A Ferrous iron transport 93.5 0.032 1.1E-06 57.4 2.9 23 84-106 5-27 (274)
411 2o52_A RAS-related protein RAB 93.5 0.033 1.1E-06 53.8 2.9 23 84-106 27-49 (200)
412 3dz8_A RAS-related protein RAB 93.5 0.031 1E-06 53.4 2.6 23 84-106 25-47 (191)
413 3t5g_A GTP-binding protein RHE 93.5 0.031 1.1E-06 52.5 2.6 22 84-105 8-29 (181)
414 1zd9_A ADP-ribosylation factor 93.5 0.034 1.2E-06 53.0 2.9 23 84-106 24-46 (188)
415 2h57_A ADP-ribosylation factor 93.5 0.026 8.9E-07 53.8 2.1 23 84-106 23-45 (190)
416 4bas_A ADP-ribosylation factor 93.5 0.034 1.2E-06 53.1 2.9 23 84-106 19-41 (199)
417 1x3s_A RAS-related protein RAB 93.5 0.035 1.2E-06 52.7 2.9 23 84-106 17-39 (195)
418 2atv_A RERG, RAS-like estrogen 93.5 0.035 1.2E-06 53.2 3.0 23 84-106 30-52 (196)
419 2bcg_Y Protein YP2, GTP-bindin 93.5 0.031 1.1E-06 53.9 2.6 23 84-106 10-32 (206)
420 3cph_A RAS-related protein SEC 93.5 0.034 1.2E-06 53.7 2.9 23 84-106 22-44 (213)
421 1ltq_A Polynucleotide kinase; 93.5 0.04 1.4E-06 56.9 3.5 22 83-104 3-24 (301)
422 3reg_A RHO-like small GTPase; 93.4 0.036 1.2E-06 53.0 2.9 23 84-106 25-47 (194)
423 2f7s_A C25KG, RAS-related prot 93.4 0.039 1.3E-06 53.7 3.3 23 84-106 27-49 (217)
424 2h17_A ADP-ribosylation factor 93.4 0.031 1.1E-06 52.8 2.4 22 84-105 23-44 (181)
425 2p5s_A RAS and EF-hand domain 93.4 0.036 1.2E-06 53.3 2.9 23 84-106 30-52 (199)
426 3exa_A TRNA delta(2)-isopenten 93.4 0.047 1.6E-06 57.5 4.0 25 82-106 3-27 (322)
427 3v9p_A DTMP kinase, thymidylat 93.4 0.032 1.1E-06 56.0 2.6 29 79-107 22-50 (227)
428 1e4v_A Adenylate kinase; trans 93.4 0.038 1.3E-06 54.2 3.1 23 84-106 2-24 (214)
429 2ew1_A RAS-related protein RAB 93.3 0.034 1.2E-06 54.1 2.6 23 84-106 28-50 (201)
430 3llu_A RAS-related GTP-binding 93.3 0.041 1.4E-06 52.8 3.1 24 84-107 22-45 (196)
431 2iwr_A Centaurin gamma 1; ANK 93.3 0.031 1E-06 52.4 2.1 22 84-105 9-30 (178)
432 1ak2_A Adenylate kinase isoenz 93.3 0.048 1.6E-06 54.4 3.6 26 81-106 15-40 (233)
433 2fv8_A H6, RHO-related GTP-bin 93.2 0.036 1.2E-06 53.7 2.7 23 84-106 27-49 (207)
434 3umf_A Adenylate kinase; rossm 93.2 0.048 1.6E-06 54.3 3.6 27 80-106 27-53 (217)
435 2q3h_A RAS homolog gene family 93.2 0.044 1.5E-06 52.6 3.2 23 84-106 22-44 (201)
436 2aka_B Dynamin-1; fusion prote 93.2 0.036 1.2E-06 57.0 2.7 23 84-106 28-50 (299)
437 3c5c_A RAS-like protein 12; GD 93.2 0.042 1.4E-06 52.5 3.0 23 84-106 23-45 (187)
438 3tqf_A HPR(Ser) kinase; transf 93.2 0.07 2.4E-06 51.3 4.4 35 69-104 4-38 (181)
439 2p65_A Hypothetical protein PF 93.2 0.04 1.4E-06 51.7 2.8 27 80-106 41-67 (187)
440 3d3q_A TRNA delta(2)-isopenten 93.1 0.044 1.5E-06 58.3 3.3 24 83-106 8-31 (340)
441 3lv8_A DTMP kinase, thymidylat 93.1 0.046 1.6E-06 55.2 3.3 27 81-107 26-52 (236)
442 2j1l_A RHO-related GTP-binding 93.1 0.043 1.5E-06 53.7 3.0 22 84-105 36-57 (214)
443 2fh5_B SR-beta, signal recogni 93.1 0.043 1.5E-06 53.3 2.9 23 84-106 9-31 (214)
444 3zvl_A Bifunctional polynucleo 93.1 0.045 1.5E-06 59.9 3.4 26 80-105 256-281 (416)
445 2h92_A Cytidylate kinase; ross 93.1 0.037 1.3E-06 54.3 2.4 25 82-106 3-27 (219)
446 1gwn_A RHO-related GTP-binding 93.0 0.04 1.4E-06 53.8 2.6 23 84-106 30-52 (205)
447 2fu5_C RAS-related protein RAB 93.0 0.03 1E-06 52.8 1.6 22 84-105 10-31 (183)
448 2zts_A Putative uncharacterize 93.0 0.062 2.1E-06 53.3 4.0 60 210-269 133-206 (251)
449 1sky_E F1-ATPase, F1-ATP synth 93.0 0.053 1.8E-06 60.1 3.8 36 70-106 140-175 (473)
450 3crm_A TRNA delta(2)-isopenten 93.0 0.045 1.5E-06 57.9 3.1 24 83-106 6-29 (323)
451 2b6h_A ADP-ribosylation factor 92.9 0.041 1.4E-06 52.8 2.5 23 83-105 30-52 (192)
452 2gco_A H9, RHO-related GTP-bin 92.9 0.043 1.5E-06 52.9 2.6 23 84-106 27-49 (201)
453 3def_A T7I23.11 protein; chlor 92.9 0.046 1.6E-06 55.6 2.9 23 84-106 38-60 (262)
454 4tmk_A Protein (thymidylate ki 92.9 0.055 1.9E-06 53.7 3.4 27 81-107 2-28 (213)
455 2ocp_A DGK, deoxyguanosine kin 92.8 0.057 1.9E-06 54.1 3.5 26 81-106 1-26 (241)
456 1p5z_B DCK, deoxycytidine kina 92.8 0.039 1.3E-06 56.1 2.3 27 80-106 22-48 (263)
457 3tmk_A Thymidylate kinase; pho 92.8 0.056 1.9E-06 53.8 3.3 29 80-108 3-31 (216)
458 3ld9_A DTMP kinase, thymidylat 92.8 0.064 2.2E-06 53.7 3.7 28 80-107 19-46 (223)
459 1h65_A Chloroplast outer envel 92.8 0.048 1.7E-06 55.7 2.9 23 84-106 41-63 (270)
460 1njg_A DNA polymerase III subu 92.8 0.061 2.1E-06 52.3 3.5 43 211-255 125-167 (250)
461 4djt_A GTP-binding nuclear pro 92.7 0.028 9.5E-07 54.8 1.0 23 84-106 13-35 (218)
462 2g3y_A GTP-binding protein GEM 92.7 0.058 2E-06 53.2 3.2 22 84-105 39-60 (211)
463 2atx_A Small GTP binding prote 92.7 0.049 1.7E-06 51.9 2.7 23 84-106 20-42 (194)
464 3cnl_A YLQF, putative uncharac 92.6 0.064 2.2E-06 54.9 3.5 25 83-107 100-124 (262)
465 2hf9_A Probable hydrogenase ni 92.5 0.057 1.9E-06 53.0 2.9 24 83-106 39-62 (226)
466 3cpj_B GTP-binding protein YPT 92.4 0.061 2.1E-06 52.8 3.0 23 84-106 15-37 (223)
467 2yc2_C IFT27, small RAB-relate 92.3 0.029 1E-06 53.8 0.5 22 84-105 22-43 (208)
468 2x77_A ADP-ribosylation factor 92.3 0.041 1.4E-06 52.2 1.5 21 84-104 24-44 (189)
469 3foz_A TRNA delta(2)-isopenten 92.3 0.079 2.7E-06 55.7 3.8 25 82-106 10-34 (316)
470 2hup_A RAS-related protein RAB 92.3 0.059 2E-06 52.1 2.7 23 84-106 31-53 (201)
471 3sr0_A Adenylate kinase; phosp 92.2 0.074 2.5E-06 52.4 3.3 23 84-106 2-24 (206)
472 3euj_A Chromosome partition pr 92.1 0.19 6.5E-06 56.0 6.9 71 192-269 377-464 (483)
473 1sxj_D Activator 1 41 kDa subu 92.1 0.022 7.7E-07 59.9 -0.6 42 212-255 133-174 (353)
474 3eph_A TRNA isopentenyltransfe 92.1 0.074 2.5E-06 57.8 3.4 25 82-106 2-26 (409)
475 4gzl_A RAS-related C3 botulinu 92.0 0.066 2.3E-06 51.8 2.6 22 84-105 32-53 (204)
476 3q3j_B RHO-related GTP-binding 91.9 0.074 2.5E-06 52.1 2.9 22 84-105 29-50 (214)
477 2j0v_A RAC-like GTP-binding pr 91.8 0.071 2.4E-06 51.6 2.6 23 84-106 11-33 (212)
478 2r62_A Cell division protease 91.8 0.023 7.7E-07 57.7 -1.1 29 76-106 40-68 (268)
479 2orw_A Thymidine kinase; TMTK, 91.1 0.12 4E-06 49.9 3.3 53 212-269 76-137 (184)
480 1ypw_A Transitional endoplasmi 91.1 0.035 1.2E-06 66.0 -0.5 33 75-107 504-536 (806)
481 2chg_A Replication factor C sm 91.1 0.11 3.7E-06 49.9 3.1 41 212-254 102-142 (226)
482 3syl_A Protein CBBX; photosynt 90.9 0.12 4E-06 53.4 3.3 27 80-106 65-91 (309)
483 3r7w_A Gtpase1, GTP-binding pr 90.9 0.15 5E-06 53.3 4.0 25 82-106 3-27 (307)
484 2x2e_A Dynamin-1; nitration, h 90.7 0.083 2.8E-06 56.3 2.0 23 84-106 33-55 (353)
485 1puj_A YLQF, conserved hypothe 90.7 0.13 4.5E-06 53.1 3.5 25 82-106 120-144 (282)
486 3gmt_A Adenylate kinase; ssgci 90.6 0.13 4.4E-06 51.7 3.2 23 84-106 10-32 (230)
487 3p32_A Probable GTPase RV1496/ 90.5 0.14 4.8E-06 54.6 3.6 26 81-106 78-103 (355)
488 3th5_A RAS-related C3 botulinu 90.0 0.049 1.7E-06 52.5 0.0 21 84-104 32-52 (204)
489 1d2n_A N-ethylmaleimide-sensit 90.4 0.14 4.8E-06 52.0 3.4 26 80-105 62-87 (272)
490 2hjg_A GTP-binding protein ENG 90.4 0.12 3.9E-06 56.9 2.8 22 84-105 5-26 (436)
491 3gj0_A GTP-binding nuclear pro 90.3 0.095 3.2E-06 51.2 1.8 22 84-105 17-39 (221)
492 1wxq_A GTP-binding protein; st 90.2 0.13 4.3E-06 56.0 3.0 79 169-263 181-262 (397)
493 2qgz_A Helicase loader, putati 90.2 0.16 5.5E-06 53.1 3.6 52 210-261 212-265 (308)
494 1g5t_A COB(I)alamin adenosyltr 90.1 0.24 8.1E-06 48.5 4.4 72 200-272 106-181 (196)
495 3l0i_B RAS-related protein RAB 90.0 0.033 1.1E-06 53.6 -1.7 23 84-106 35-57 (199)
496 1knx_A Probable HPR(Ser) kinas 90.0 0.26 9E-06 51.7 5.1 35 69-104 135-169 (312)
497 3geh_A MNME, tRNA modification 89.9 0.12 4.1E-06 57.3 2.5 25 81-105 223-247 (462)
498 3uk6_A RUVB-like 2; hexameric 89.9 0.15 5.3E-06 53.9 3.3 28 80-107 68-95 (368)
499 4hlc_A DTMP kinase, thymidylat 89.9 0.19 6.6E-06 49.3 3.7 26 82-107 2-27 (205)
500 3eie_A Vacuolar protein sortin 89.8 0.17 5.9E-06 53.0 3.5 27 80-106 49-75 (322)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.2e-48 Score=418.48 Aligned_cols=221 Identities=24% Similarity=0.368 Sum_probs=197.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++||+++|..+. +...+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3599999999995321 2357999999999999999999999999999999999999986 9999999997532
Q ss_pred ----CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.++.+|||+|++.+++.+||+||+.++.... ..++++.+++++++++.+||.+..+++ +.+|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHH
Confidence 1357999999999999999999999987654 345677788999999999999887775 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||+|||||+.+|++|||||||||||+.++..+++.|+++++ .|+|||++||++ +++.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 599999999996 6788999999999999999999988
Q ss_pred hHH
Q 005252 281 AAF 283 (706)
Q Consensus 281 ~~~ 283 (706)
++.
T Consensus 250 ev~ 252 (366)
T 3tui_C 250 EVF 252 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.7e-48 Score=420.57 Aligned_cols=217 Identities=25% Similarity=0.374 Sum_probs=197.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~ 127 (706)
.|+++||+++| +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. ...
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999986 999999999753 223
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|||+|++.+++.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..++++ .+|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHH
Confidence 67999999999999999999999987654 3467777889999999999998887754 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999764 99999999996 68999999999999999999999988653
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8e-48 Score=395.18 Aligned_cols=220 Identities=26% Similarity=0.359 Sum_probs=189.1
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 126 (706)
|+++||+++|..+. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999986 99999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHH
Q 005252 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerq 201 (706)
++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.++|.+. .++. +.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHH
Confidence 23599999999999999999999998654422234566677889999999999864 3654 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..|+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999765 999999999973 46899999999999999999887
Q ss_pred hH
Q 005252 281 AA 282 (706)
Q Consensus 281 ~~ 282 (706)
+.
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 64
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.9e-48 Score=417.68 Aligned_cols=217 Identities=24% Similarity=0.388 Sum_probs=194.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----C--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~----~-- 124 (706)
.|+++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999986 99999999874 1
Q ss_pred -cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 125 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
...+.+|||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.+||.+..|+++ .+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHH
Confidence 12367999999999999999999999986543 2345667788999999999998888754 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||||+.+|++|||||||||||+..+..+.+.|+++. +.|+|+|++|||. +++..+||||++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999888875 4699999999995 689999999999999999999999876
Q ss_pred HH
Q 005252 283 FE 284 (706)
Q Consensus 283 ~~ 284 (706)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-47 Score=398.28 Aligned_cols=216 Identities=29% Similarity=0.436 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cC-
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LS- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~- 126 (706)
.|+++||++.| +++++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. ..
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999999 3467999999999999999999999999999999999999886 999999998753 11
Q ss_pred ---cCcEEEEecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 127 ---FGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 127 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
++.++||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+..++.+ .+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHH
Confidence 246999999999999999999999964 322 2344555678999999999988877754 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987899999999996 578889999999999999999998765
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.1e-48 Score=403.59 Aligned_cols=218 Identities=28% Similarity=0.423 Sum_probs=191.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||+++|. +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 599999999983 2345999999999999999999999999999999999999886 9999999997621
Q ss_pred --CcCcEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 126 --SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 --~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
.++.+|||+|++ ..+..+||+||+.|+.... ..+.++.+++++++++.+||.+..++.+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 135699999996 2344789999999987543 3456777788999999999998888755 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchh
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~ 281 (706)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +++.++||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999997 46788999999999999999999987
Q ss_pred HHH
Q 005252 282 AFE 284 (706)
Q Consensus 282 ~~~ 284 (706)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 643
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-47 Score=388.69 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.|+++||++.| +.+++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred -----cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 127 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
.+.++||+|++.+++.+||+||+.++.... ..+.++.+++++++++.+||.+..++.+ .+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2334555678899999999998887755 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +.+ ++||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987899999999996 455 89999999999999998863
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-47 Score=398.94 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.| +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 48999999998 3467999999999999999999999999999999999999886 9999999987531
Q ss_pred -------------CcCcEEEEecCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 005252 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (706)
Q Consensus 126 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~ 190 (706)
.++.++||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP--- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc---
Confidence 1246999999999999999999999964 322 23445556789999999999887 77754
Q ss_pred ccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++
T Consensus 152 --~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 152 --VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999987899999999996 578889999999999
Q ss_pred CeEEEEcCchhHH
Q 005252 271 GKTVYFGETSAAF 283 (706)
Q Consensus 271 G~iv~~G~~~~~~ 283 (706)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987654
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-47 Score=394.74 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----C
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 126 (706)
.|+++||++.| +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 48999999998 3567999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
++.++||+|++.+++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976543 1234455577899999999998887755 46999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999996 56788899999999999999999887654
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.7e-47 Score=396.37 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.|+++||++.| +++++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 005252 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (706)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 194 (706)
++.++||+|++.+++.+||+||+.++... .... ....++.+++++++++.+||++..++.+ ..
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 24699999999999999999999987532 1110 0123445577899999999988887755 46
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999997 4678899999999999999
Q ss_pred EEcCchh
Q 005252 275 YFGETSA 281 (706)
Q Consensus 275 ~~G~~~~ 281 (706)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999877
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-46 Score=409.11 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------ 124 (706)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 48999999999 4567999999999999999999999999999999999999886 999999998642
Q ss_pred ---cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHH
Q 005252 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (706)
Q Consensus 125 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 201 (706)
...+.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++++ .+|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHH
Confidence 12357999999999999999999999987653 2346666788999999999998887754 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCch
Q 005252 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (706)
Q Consensus 202 Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~ 280 (706)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 99999999996 6788999999999999999999998
Q ss_pred hHH
Q 005252 281 AAF 283 (706)
Q Consensus 281 ~~~ 283 (706)
++.
T Consensus 226 ~l~ 228 (372)
T 1g29_1 226 EVY 228 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-47 Score=389.04 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 126 (706)
.|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999886 99999999875321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChHHHHHH
Q 005252 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
++.++||+|++.+++.+||+||+.++.... .+.++.+++++++++.++ |.+..++. +..|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 235999999999999999999999864211 123344567888999994 87776664 457999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999996 5788999999999999999999887653
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.6e-47 Score=408.98 Aligned_cols=216 Identities=26% Similarity=0.418 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||+++| +.+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 38999999988 3467999999999999999999999999999999999999886 9999999987531 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++++ .+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIAR 146 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHH
Confidence 67999999999999999999999987653 2346666788999999999998887754 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||+ .++..++|+|++|++|+++..|+++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999764 99999999996 6788999999999999999999998764
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8e-47 Score=409.14 Aligned_cols=217 Identities=24% Similarity=0.419 Sum_probs=193.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 38999999999 4567999999999999999999999999999999999999886 9999999987531 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++++ .+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALAR 146 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHH
Confidence 67999999999999999999999986432 2334455678999999999998887754 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|+++++.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 99999999996 67889999999999999999999987653
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-46 Score=407.36 Aligned_cols=219 Identities=24% Similarity=0.423 Sum_probs=195.8
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---c
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~ 125 (706)
...|+++||+++|. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 45699999999872 2357999999999999999999999999999999999999886 999999998753 2
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
..+.++||+|+..+++.+||+||+.|+...+ ..++++.+++++++++.+||.+..++++ .+|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 2356667788999999999998888754 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 206 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||||+.+|++|||||||||||+.++..+.+.|+++.++ |.|+|++|||+ +++..++|++++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999764 99999999996 6788999999999999999999998764
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-46 Score=408.06 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCCcccc--ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC----
Q 005252 51 RLTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---- 124 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---- 124 (706)
.|+++||+++| +.+. +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++..
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 38999999999 3466 999999999999999999999999999999999999886 999999998642
Q ss_pred ----cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHH
Q 005252 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (706)
Q Consensus 125 ----~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer 200 (706)
...+.+|||+|+..+++++||+||+.|+...+ ..++++.+++++++++.+||.+..++++ .+||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~ 146 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQ 146 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 12367999999999999999999999986543 2456666788999999999998888754 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
|||+|||||+.+|++|||||||||||+..+..+.+.|+++.+ .|+|+|++|||+ +++..++|++++|++|+++..|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999976 499999999996 678999999999999999999999
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
+++.
T Consensus 226 ~~l~ 229 (353)
T 1oxx_K 226 EDLY 229 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-46 Score=410.07 Aligned_cols=216 Identities=23% Similarity=0.383 Sum_probs=187.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---Cc
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 127 (706)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 39999999999 4467999999999999999999999999999999999999886 9999999987531 23
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHH
Q 005252 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 128 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
+.+|||+|+..+|+++||+||+.|+.+.+ ..++++.+++++++++.+||.+..++++ .+|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 67999999999999999999999975432 2456666788999999999998887754 579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|||||||||||+..+..+.+.|+++.++ |.|+|++|||+ .++..++|+|++|++|+++..|+++++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999764 99999999996 6788999999999999999999998765
No 18
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.7e-47 Score=402.38 Aligned_cols=247 Identities=26% Similarity=0.354 Sum_probs=198.6
Q ss_pred ChhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEe
Q 005252 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (706)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (706)
+++.++++|++++++.++...... +..| .......|+++||++.|. +.+.+|+||||+++
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~--~~~~--------------~~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~ 78 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLP--GAGP--------------LRFQKGRIEFENVHFSYA----DGRETLQDVSFTVM 78 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCT--TCBC--------------CCCSSCCEEEEEEEEESS----TTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCccccccc--cccc--------------cCCCCCeEEEEEEEEEcC----CCCceeeeeeEEEc
Confidence 367899999999998777643211 0000 001123599999999983 34679999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
+||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+|+. ||+||+.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT 154 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc
Confidence 99999999999999999999999999986 9999999998542 13569999999999865 999999986421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
... +.+++.++..++. +..++.+|+ ...+|||||||||+|||||+.+|+|||||||||+||+.
T Consensus 155 -----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 -----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp -----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred -----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 112 2244444444443 345777775 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
++..+++.|+++.+ ++|+|+++|++. .+. .||+|++|++|++++.|+++++..
T Consensus 225 ~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 225 NERAIQASLAKVCA-NRTTIVVAHRLS-TVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSHH-HHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEcChH-HHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999864 799999999964 454 499999999999999999987764
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-46 Score=392.14 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=190.2
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 126 (706)
..|+++||++.+ +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 469999999998 4578999999999999999999999999999999999999886 89999999985321
Q ss_pred --cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 127 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ .+|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 246899999999888899999999875432 12234567899999999998888755 469999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 205 Ia~aL~~------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++.++||++++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999765 57999999996 6788899999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 988753
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-46 Score=401.43 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=188.4
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|+++||+++| +.+ +|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 7899999988 345 999999999999999999999999999999999999886 9999999987532 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.+|||+|+..+++++||+||+.|+...+. .+++ ++++++++.+||++..|+++ .+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 69999999999999999999999876431 1122 67899999999998888754 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+.+|++|||||||+|||+..+..+.+.|+++.+ .|+|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999996 6788999999999999999999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-46 Score=386.55 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcc---ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--
Q 005252 51 RLTWKDLTVMVTLSNGET---HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-- 125 (706)
.|+++||++.|.. +. +.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHH
Confidence 4889999999831 12 57999999999999999999999999999999999999886 9999999987531
Q ss_pred CcCcEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChHHHHH
Q 005252 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 126 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqR 202 (706)
.++.++||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||. +..++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qR 146 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRR 146 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHH
Confidence 235699999995 5667789999999875321 11222346688999999998 7777754 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999997 467788999999999999999998876
Q ss_pred HH
Q 005252 283 FE 284 (706)
Q Consensus 283 ~~ 284 (706)
.+
T Consensus 226 ~~ 227 (266)
T 2yz2_A 226 LE 227 (266)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-45 Score=380.26 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc---CcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (706)
|+++||++.| +. +|+|+|+++++ |+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6789999998 22 49999999999 999999999999999999999999886 9999999987531 235
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|++.+++.+||+||+.++.... .....+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999864321 11223567899999999988877755 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 499999999996 5788999999999999999999987654
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-45 Score=382.08 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecCcC--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~-- 126 (706)
.|+++||++.| +.+.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 48999999998 346799999999999999999999999999999999998 5564 99999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcccCC-CChHHH
Q 005252 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGER 200 (706)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~-LSGGer 200 (706)
+..++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..++.+ .. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 23489999999999999999999986532111112234445778999999999 47777754 45 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEEcCc
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~G~~ 279 (706)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999977799999999997 456667 599999999999999998
Q ss_pred h
Q 005252 280 S 280 (706)
Q Consensus 280 ~ 280 (706)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-45 Score=388.35 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=185.1
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC--c-
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L- 125 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~- 125 (706)
...|+++||++.| +.+++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 19 ~~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90 (279)
T ss_dssp CEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---C
T ss_pred CceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccC
Confidence 3469999999999 3467999999999999999999999999999999999999886 999999998753 1
Q ss_pred ----CcCcEEEEecCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 ----SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ----~~~~~~yv~Q~~~l--~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
.++.++||+|++.+ .+.+||+||+.++...... .....++.+++++++++.+||.+..++.+ .+||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 165 (279)
T 2ihy_A 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTG 165 (279)
T ss_dssp CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHH
T ss_pred CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 13569999999754 3457999999886321100 01112344567899999999988887755 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--I~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++.++||++++|++|++++.
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999997779999 9999996 567789999999999999999
Q ss_pred cCchhH
Q 005252 277 GETSAA 282 (706)
Q Consensus 277 G~~~~~ 282 (706)
|++++.
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 988754
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-44 Score=377.72 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEecCcC--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~-- 126 (706)
.|+++||++.| +++.+|+|||+++++||+++|+||||||||||||+|+|+. +| .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCH
Confidence 49999999998 3467999999999999999999999999999999999984 34 489999999875321
Q ss_pred ----cCcEEEEecCCCCCCCCCHHHHHHHHhh-cc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 005252 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-LR---LPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (706)
Q Consensus 127 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSG 197 (706)
...++||+|++.+++.+||.||+.+... .. .....+.++.+++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1348999999999999999999987542 11 111223445567889999999996 45666442 14999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhh-CCeEEEEeCCeEEEE
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~-~D~vilL~~G~iv~~ 276 (706)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999977799999999996 455565 899999999999999
Q ss_pred cCchhHHH
Q 005252 277 GETSAAFE 284 (706)
Q Consensus 277 G~~~~~~~ 284 (706)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99887653
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.9e-44 Score=372.64 Aligned_cols=210 Identities=27% Similarity=0.334 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++.|. .++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~----~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQ----AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEET----TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeC----CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 489999999982 1467999999999999999999999999999999999999886 999982 2569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
+||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAI 143 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 9999999999899999999987532111 00112344567899999999988877754 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++.++||++++|++|+ ++.|++++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999876 99999999996 56788999999999999 999988764
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.9e-45 Score=380.55 Aligned_cols=217 Identities=29% Similarity=0.385 Sum_probs=178.8
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.|.. ++.+.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 16 ~l~~~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPN--HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTT--CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 5999999998821 01267999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGG 198 (706)
.++.++||+|++.+++ .||+||+.++.... . ..++ ....++++++.+ ||.+..++ .+.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 1246999999998887 49999999864211 1 1111 123356677777 66655555 34579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ +.+ ..||++++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 589999999996 444 459999999999999999
Q ss_pred CchhHHH
Q 005252 278 ETSAAFE 284 (706)
Q Consensus 278 ~~~~~~~ 284 (706)
+++++.+
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9877643
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.3e-44 Score=372.10 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=179.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..++++||++.|. ++.+.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 6 ~~~~~~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 3689999999882 12467999999999999999999999999999999999999886 9999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCCh
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISG 197 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSG 197 (706)
.++.++||+|++.+++ .||+||+.++.. ..+ .++++++++.+++.+..++ .++. .+..|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCH
Confidence 1246999999998887 599999987521 112 2346677788888654433 3332 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 6999999999974 44 569999999999999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987653
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.4e-44 Score=368.57 Aligned_cols=205 Identities=27% Similarity=0.386 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++. .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|++...
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4889999863 589999999999999999999999999999999999987 5 999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I 205 (706)
.++.++||+|++.+++.+||+||+.++.. .. .. +++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 12469999999999999999999987521 11 11 456889999999988877754 5799999999999
Q ss_pred HHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 206 a~aL~~~p~-------llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||+|+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ +.+.++||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999996 56778999999999999999998
Q ss_pred chhH
Q 005252 279 TSAA 282 (706)
Q Consensus 279 ~~~~ 282 (706)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-44 Score=371.15 Aligned_cols=212 Identities=26% Similarity=0.431 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----C
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 126 (706)
|+++||++.|. +.+.+|+|||+++++||+++|+||||||||||||+|+|+++|. +|+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999998872 2467999999999999999999999999999999999999885 8999999987421 2
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCcccCCCChHH
Q 005252 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (706)
Q Consensus 127 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSGGe 199 (706)
++.++||+|++.+++. ||+||+.++.. + ... +++++++++.+++.+..++. ++ ..+..|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999988875 99999987521 1 112 23467888889987765543 22 2467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCc
Q 005252 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (706)
Q Consensus 200 rqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~ 279 (706)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++ +.+ +.||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 344 56999999999999999988
Q ss_pred hhHH
Q 005252 280 SAAF 283 (706)
Q Consensus 280 ~~~~ 283 (706)
+++.
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 31
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.7e-43 Score=406.14 Aligned_cols=247 Identities=25% Similarity=0.311 Sum_probs=199.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++||.++++.+|+.+.-. .+ .+ .......++++|++++|.. +.+++|+|+|+++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~~---~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGV----GA---------QP---IEIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCT----TC---------CC---CCCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCC----Cc---------cc---cCCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 57899999999998877643200 00 00 0011235999999998842 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 440 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-- 440 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998532 13569999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
. .+. +.+.+.++..++ .+..||.+|+ ...+||||||||++|||||+++|++|+|||||||||+.+
T Consensus 441 --~-~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 441 --T-ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp --S-CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred --C-CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 122 234444444443 4567888875 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|++++..+
T Consensus 513 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999885 4799999999975 34 5699999999999999999987754
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-44 Score=362.36 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=173.2
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
+..|+++||++.| +. ++|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 3469999999988 34 7999999999999999999999999999999999999886 9999999987532346
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|++.+++.+||+||+.++..... .. .+ +++++++++.+||++. ++. +.+|||||||||+||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 147 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999999765421 11 11 3568889999999876 654 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeE
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~i 273 (706)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++..++|++++++ |++
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999999999999999867899999999974 6777888887653 444
No 33
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-43 Score=409.62 Aligned_cols=247 Identities=24% Similarity=0.377 Sum_probs=198.5
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+|..+... .+ .. .......++++|++++|. ++.+++|+|+|+++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~--------~~----~~~~~~~i~~~~v~~~y~---~~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA--------LA----LPNVEGSVSFENVEFRYF---ENTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC--------BC----CSCCCCCEEEEEEEECSS---SSSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc--------cc----cCCCCCcEEEEEEEEEcC---CCCCcceeceEEEEcC
Confidence 57899999999999877643200 00 00 001123599999999884 2346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+|+|+|+++|. +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-- 442 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-- 442 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 9999999987532 13579999999999976 99999987532
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++ +.+.++..+ +.+..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 ---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 443 ---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 112222 223333333 44567888876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++. +|+|+|+++|+++ . ...||+|++|++|++++.|++++..+
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999974 3 46899999999999999999988764
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-43 Score=365.97 Aligned_cols=208 Identities=22% Similarity=0.337 Sum_probs=179.2
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CcCc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (706)
|+++||+++|... +..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|++... .++.
T Consensus 2 l~~~~l~~~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 7899999998410 011679999999999 9999999999999999999999999 86 9999999987421 1457
Q ss_pred EE-EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHHH
Q 005252 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (706)
Q Consensus 130 ~~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~Ia~ 207 (706)
++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.+ .+|||||||||+|||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 99 99999887 789999999876542 11 135688899999998 7777754 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCC-eEEEEeCCeEEEEcCchhHH
Q 005252 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 208 aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D-~vilL~~G~iv~~G~~~~~~ 283 (706)
||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++ .++.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999998854 999999996 56778999 99999999999999988765
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.7e-43 Score=364.39 Aligned_cols=213 Identities=28% Similarity=0.398 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.|+++||++.|.. ...+.+|+|||+++++||+++|+||||||||||||+|+|++++ +|+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPK--QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTT--CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCC--CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 5999999998831 1125699999999999999999999999999999999999864 7999999987532
Q ss_pred CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChH
Q 005252 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGG 198 (706)
.++.++||+|++.+++ .||+||+.++.. .... +.+.+.++.+++. +..|+.++. .+..||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHH
Confidence 1356999999999886 599999987521 1112 3345566666654 334555543 56789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999964 899999999974 44 5699999999999999999
Q ss_pred chhHH
Q 005252 279 TSAAF 283 (706)
Q Consensus 279 ~~~~~ 283 (706)
++++.
T Consensus 237 ~~~l~ 241 (260)
T 2ghi_A 237 HKDLL 241 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.6e-43 Score=403.79 Aligned_cols=250 Identities=28% Similarity=0.398 Sum_probs=199.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeE-EEEEeEEEEEEccCCccccceeceEEEEe
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSAR-LTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (706)
++.+|++|+.++++.+|+.+. . .+ ..+ ....... ++++|++++|.. ++++++|+|+|++++
T Consensus 307 ~~~~s~~ri~~~l~~~~~~~~-~-~~-----------~~~---~~~~~~~~i~~~~v~~~y~~--~~~~~vl~~isl~i~ 368 (595)
T 2yl4_A 307 KGLGAGGRLWELLEREPKLPF-N-EG-----------VIL---NEKSFQGALEFKNVHFAYPA--RPEVPIFQDFSLSIP 368 (595)
T ss_dssp HHHHHHHHHHHHHTCCCSSCS-S-CS-----------BCC---CTTTCCCCEEEEEEEEECSS--CTTSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCccCC-C-CC-----------CCC---CcCCCCCeEEEEEEEEEeCC--CCCCccccceEEEEc
Confidence 578899999999987765432 0 00 000 0011224 899999999831 113569999999999
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
+||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+++. ||+||+.++...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 444 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADD 444 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCC
Confidence 99999999999999999999999999886 9999999998532 13569999999999875 999999986421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
. ...+ +++++++++.+++. +..|+.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.
T Consensus 445 ~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 445 P--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp T--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred c--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 1 0112 24466777777764 456888876 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++..
T Consensus 518 ~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 518 NEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999976 799999999974 44 569999999999999999988764
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-42 Score=400.80 Aligned_cols=246 Identities=28% Similarity=0.375 Sum_probs=200.3
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|.+|+.++++.+|+.+. +..+ . . .....++++|++++|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~~---------~----~-~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE----GKRV---------I----D-RATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC----CCBC---------C----S-CCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC----CCCC---------C----C-CCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 578899999999987766321 0000 0 0 01224999999998831 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+++. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999886 9999999998532 13569999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..++ ++++++++.+++.+ ..|+.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 1222 34666777777643 46777876 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++..+
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999965 899999999975 34 5799999999999999999887654
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.5e-42 Score=400.42 Aligned_cols=245 Identities=28% Similarity=0.391 Sum_probs=199.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+++.+. +..+ . . .....++++|++++|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~~---------~----~-~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKYE---------A----E-RVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCCC---------C----C-CCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578999999999987665321 0000 0 0 01235999999999931 126799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+++. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999886 8999999987531 13579999999999986 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
+ ..+ ++++++.++.+++.+ ..||.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 234667777777653 45677775 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
+..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+.++..
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999864 899999999974 44 579999999999999999988764
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-43 Score=405.63 Aligned_cols=245 Identities=24% Similarity=0.351 Sum_probs=196.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+++.+... + .. .......++++|++++|. +++++|+|+|+++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~-----~--------~~----~~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD-----A--------VE----LREVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS-----C--------CC----CCSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-----C--------CC----CCCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 57899999999998777643200 0 00 001123599999999883 346799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+|+|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-- 454 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-- 454 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST--
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998532 13579999999999875 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++ +.+.++..++ .+..|+.+|+ ...+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 455 ---~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 455 ---GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ---TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ---CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 112222 3333333333 3456777775 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|++++..+
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 5899999999985 44 5699999999999999999987654
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-42 Score=353.54 Aligned_cols=204 Identities=23% Similarity=0.330 Sum_probs=167.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++.+. ++.+++|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~---~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWE---EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSS---TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeC---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 589999999873 12467999999999999999999999999999999999999886 99999998 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCChHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRv 203 (706)
+||+|++.+++. ||+||+.++.. ... ..+++.++.+++.+. .++.++. .+..|||||||||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999998886 99999987532 111 123334444454332 2333432 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++ +.+ ..||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45554 489999999996 444 46999999999999999998765
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=353.89 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=165.7
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3899999998831 1467999999999999999999999999999999999999885 99999998 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
+||+|++.+ +.+||+||+.++... ..+. .+.+.+ +.+.+++.+ ..++.++ ..+.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 999999865 578999999886421 1111 111111 222333321 2233343 35678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~ 283 (706)
|||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||++. .+ ..||++++|++|++++.|++++..
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 5899999999975 34 579999999999999999987654
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=377.48 Aligned_cols=214 Identities=24% Similarity=0.307 Sum_probs=180.1
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc----
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~---- 125 (706)
..|+++||+++|. .+.+.+|+|||+++++||+++|+|||||||||||++|+|+++ . +|+|.++|++...
T Consensus 18 ~~i~~~~l~~~y~---~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYT---EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESS---SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEec---CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 4599999999983 134679999999999999999999999999999999999986 4 8999999987532
Q ss_pred -CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------cccCCCChH
Q 005252 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (706)
Q Consensus 126 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSGG 198 (706)
.++.++||+|++.+|+ +||+||+.+.. ... ++++.++++.++|.+..+++... ....+||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 1357999999999997 59999996421 111 24578899999998776664431 122349999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
|||||+|||||+.+|++|||||||||||+.++..+.+.|+++. +++|+|+++|+. +....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 579999999996 3467799999999999999999
Q ss_pred chhHHH
Q 005252 279 TSAAFE 284 (706)
Q Consensus 279 ~~~~~~ 284 (706)
++++..
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.1e-42 Score=426.08 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=204.8
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++++|++|+.++++.+|+.+..... .. ..+....|+|+||+++|+. +++.+||+|||++|+|
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~------~~----------~~~~~g~I~f~nVsf~Y~~--~~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLA------GE----------KKKLYGKVIFKNVRFAYPE--RPEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCC------SB----------CCCCCCCEEEEEEEECCTT--SCSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCC------CC----------CCCCCCeEEEEEEEEeCCC--CCCCccccceeEEECC
Confidence 4678999999999988875531110 00 0011235999999999842 2345799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+++|.|+++|. +|+|++||.++.. .++.++|||||+.+|+. ||||||.|+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999998642 24679999999999988 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
|...+.+ .+.+.++..+ |.+..||.||+ ....||||||||++|||||+++|+||+||||||+||+++
T Consensus 1179 -~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 2223333 3445555544 45678999997 456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+++++|+++++++
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 47999999999864 57899999999999999999998775
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-41 Score=423.64 Aligned_cols=249 Identities=26% Similarity=0.351 Sum_probs=204.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
+|.+|++||.++++.+|..+.....+. ........++++|++++|+. .+++++|+|+|+++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~---------------~~~~~~g~I~~~nvsF~Y~~--~~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGR---------------KDMKIKGDITVENVHFTYPS--RPDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCC---------------CCCCCCCCEEEEEEEECCSS--STTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCccccccccccc---------------cCCCCCCcEEEEEeeeeCCC--CCCCceeeceEEeecC
Confidence 578999999999998887553111000 01112235999999999842 2356899999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||.+||+||||||||||+++|.|.++|. +|+|.+||.+++.. ++.++||+|++.+|+. ||+|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999986 99999999986431 3579999999999988 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++ +.++++..+ |.+..||.||+. ...||||||||++||||++++|+||+||||||+||+.+
T Consensus 518 ---~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHHH----HHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 123333 334443333 567789999974 45799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
+..+.+.|+++. +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+|+.+
T Consensus 590 e~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999886 4899999999986 468899999999999999999988764
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.9e-40 Score=409.51 Aligned_cols=251 Identities=27% Similarity=0.394 Sum_probs=199.7
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+|..+.....+. .+ ......|+++|++++|.. +..+++|+|||+++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~-----------~~----~~~~g~i~~~~v~~~y~~--~~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGH-----------KP----DNIQGNLEFKNIHFSYPS--RKEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCC-----------CC----TTCCCCEEEEEEEECCSS--TTSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCC-----------CC----CCCCCeEEEEEEEEEcCC--CCCCcceecceEEEcC
Confidence 578999999999998876543111000 00 011235999999999842 1235799999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+++|+|.++|+ +|+|.+||++... .++.++||+|++.+++. ||+||+.++..
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-- 489 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999998532 13569999999999987 99999999742
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
..+.++..+.. .+.++. +.+..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.++.
T Consensus 490 ---~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 490 ---DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHh--ccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 12233322221 222332 45567888886 55689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.+.+.|+++. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|+.++..+
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 5899999999964 45 5599999999999999999988764
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.3e-40 Score=344.95 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=154.1
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|+++||++. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 5899999873 256999999999999999999999999999999999999885 99999988 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCcccCCCChHHHHHH
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRv 203 (706)
+||+|++.+++. ||+||+. +. . ... ..+++.++.+++.+. .++.++. .+..|||||||||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999998886 9999997 32 1 111 123344455555432 2333332 3568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
+|||+|+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 5554 489999999996 444 56999999999999999998876
Q ss_pred H
Q 005252 283 F 283 (706)
Q Consensus 283 ~ 283 (706)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.3e-39 Score=398.09 Aligned_cols=251 Identities=27% Similarity=0.415 Sum_probs=199.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++|+.++++.+|..+.....+.. +......++++|+++.|.. .+.+++|+|+|+++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~---------------~~~~~g~i~~~~v~~~y~~--~~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGLK---------------PNMLEGNVQFSGVVFNYPT--RPSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCCC---------------TTTTSCCEEEEEEEBCCSC--GGGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCccccccccccc---------------ccCCCCcEEEEEEEEECCC--CCCCeeecceeEEEcC
Confidence 5788999999999988775431111000 0011235999999998842 1234699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
||++||+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+++. ||+||+.++...+
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC
Confidence 9999999999999999999999999986 9999999987532 14579999999988865 9999998763211
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
..+.++.. +.++.. .+.+..||.+|+ ....|||||||||+|||+|+++|+||+|||||+|||+.+
T Consensus 1135 ---~~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1135 ---VVSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp ---CCCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred ---CCCHHHHH----HHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 12333322 222222 345678899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHH
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
...+.+.|+++ .+|+|||+++|++. .+ ..||+|++|++|++++.|++++..+
T Consensus 1207 ~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1207 EKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 45899999999975 44 6699999999999999999987764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6e-36 Score=345.15 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=177.5
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||||+|+|+++|. +|+|.++ .
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~--------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD--------L 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC--------C
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe--------e
Confidence 4579999999887 22 3689999999999999999999999999999999999886 8998761 4
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.+ ..|||||||||+||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 5899999988778899999887641110 011356788999999988777755 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC--CeEEEEcCchhHHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~--G~iv~~G~~~~~~~ 284 (706)
|+.+|++|||||||+|||+.++..+++.|+++++ +|.|||++|||+ .++..+||++++|++ |+++..|+++++.+
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999974 699999999995 678899999999986 88889999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.4e-36 Score=341.79 Aligned_cols=206 Identities=26% Similarity=0.302 Sum_probs=176.3
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...++++|+++.+ ++ ..|+++|+++++||+++|+|||||||||||++|+|+++|. +|+|.++ .
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC--------C
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC--------c
Confidence 3569999999887 22 3689999999999999999999999999999999999885 8998751 3
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++||+|+....+.+||.|++......... ..++++++++.+++.+..++.+ ..|||||||||+||++
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 589999998777888999988754111100 1246788999999987777755 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC--CeEEEEcCchhHHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~--G~iv~~G~~~~~~~ 284 (706)
|+.+|++|||||||+|||..++..+.+.|+++++ .|.|||++|||. .++..+||+|++|++ |+++..|+++++.+
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999974 689999999995 678899999999986 88999999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-35 Score=336.33 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=174.7
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...++++|+++.+ ++ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 3568999999887 22 4588889999999999999999999999999999999986 89998765 3
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
.++|++|+......+||+||+.+...... .. ....++++++.++|.+..++.+ ..|||||||||+|||+
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999776678899999987422111 01 1245788899999988777755 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC--CeEEEEcCchhHH
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 283 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~--G~iv~~G~~~~~~ 283 (706)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||. .++..+||||++|++ |.....+++.+..
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999999975 689999999996 678899999999986 6677777776544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-34 Score=330.26 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=167.1
Q ss_pred EeEEEEEEccCCccccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 55 KDLTVMVTLSNGETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
+++++.+. ..+.+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. . ....
T Consensus 350 ~~~~~~y~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYP----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLN 414 (608)
T ss_dssp SSSCCEEC----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCC
T ss_pred cceeEEec----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCc
Confidence 34455552 2345789999999999 789999999999999999999999886 7752 1 1245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL 209 (706)
++|++|+.......||+|++..... .... ....++++++.++|.+..++.+ ..|||||||||+|||+|
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~----~~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIR----GQFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCS----STTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHhh----cccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 8999999766666799998764321 1111 1245678899999998887755 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeC--CeEEEEcCchhHHH
Q 005252 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (706)
Q Consensus 210 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~--G~iv~~G~~~~~~~ 284 (706)
+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||. .++..+||||++|++ |+++..|+++++.+
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999999864 699999999995 688899999999986 99999999988765
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.5e-33 Score=334.22 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=166.8
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
...|...|+++.| +.+.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+.... .
T Consensus 433 ~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~-~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE-C 495 (986)
T ss_dssp SCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-S
T ss_pred cceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-e
Confidence 4467777999988 45789999999999999999999999999999999995 222 34332111 2
Q ss_pred cEEEEecCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChHHHHHHHHH
Q 005252 129 TAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 129 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.++|++|+. .+++.+||.|++.+ .. . .. +++++++++.+||. +..++.++ +|||||||||+||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLA 560 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALA 560 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHH
Confidence 368999984 67889999999975 11 1 11 46788999999995 56677554 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-EEcCchhHHH
Q 005252 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (706)
Q Consensus 207 ~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv-~~G~~~~~~~ 284 (706)
++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||+. .++.++||++++|++|+++ +.|+.++...
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999999988 589999999995 6788999999999999997 7899887654
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.4e-34 Score=331.81 Aligned_cols=192 Identities=26% Similarity=0.352 Sum_probs=157.0
Q ss_pred EeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEecCc
Q 005252 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTKL 125 (706)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~~G~~~~~ 125 (706)
+||+++|. +...+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+...
T Consensus 95 ~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYG----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEEC----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhh
Confidence 77787772 2225899999 99999999999999999999999999999886 7875 456654211
Q ss_pred -------CcCcEEEEecCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 005252 126 -------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (706)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 195 (706)
....+++++|.....+ ..||+|++... .. .++++++++.+||++..|+.++ +|
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~L 229 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QL 229 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hC
Confidence 1234789998743222 13999998641 00 1347889999999988887654 69
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ ..+..++|+|++|+++.
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999988899999999995 57888999999998653
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-34 Score=327.75 Aligned_cols=197 Identities=25% Similarity=0.313 Sum_probs=157.3
Q ss_pred eEEEE-EeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EEC
Q 005252 50 ARLTW-KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLN 119 (706)
Q Consensus 50 ~~l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~~ 119 (706)
+..++ +||+++|. +...+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|++ .++
T Consensus 19 ~~~~~~~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 19 HMEQLEEDCVHRYG----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp -----CCCEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred CChhHhcCcEEEEC----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 33555 58888882 2225899999 99999999999999999999999999999886 7875 456
Q ss_pred CEecC-------cCcCcEEEEecCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005252 120 GHKTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189 (706)
Q Consensus 120 G~~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~ 189 (706)
|.+.. .....+++++|+..+++. .||.|++.... ..++++++++.+||.+..++.+
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~-- 156 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREI-- 156 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBG--
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCCh--
Confidence 65421 012347899987543332 38999885321 0134788999999988777755
Q ss_pred cccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 190 ~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||++||+. .++..+||+|++|+
T Consensus 157 ---~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 157 ---QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVY 232 (538)
T ss_dssp ---GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEc
Confidence 46999999999999999999999999999999999999999999999988899999999995 67889999999998
Q ss_pred CCe
Q 005252 270 GGK 272 (706)
Q Consensus 270 ~G~ 272 (706)
+|.
T Consensus 233 ~~~ 235 (538)
T 1yqt_A 233 GEP 235 (538)
T ss_dssp EET
T ss_pred Ccc
Confidence 653
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-33 Score=330.81 Aligned_cols=208 Identities=26% Similarity=0.302 Sum_probs=140.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC----CceeEEEECCEe
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNA----FLSGTILLNGHK 122 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~LaG~~~~~~----~~~G~I~~~G~~ 122 (706)
.+.+|+||||++++||+++|+||||||||||+ ++++|+..|+. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 78888776641 114667777764
Q ss_pred cCc-CcCcEEEEecCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCHHHHH------HHHHHHHHH
Q 005252 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPWSEKR------TLVERTIIE 176 (706)
Q Consensus 123 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~------~~v~~~l~~ 176 (706)
... ....++||+|... .++.+||+||+.+...+..... .....+ ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455555432 2457899999987533221110 000000 111245888
Q ss_pred cCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005252 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (706)
Q Consensus 177 lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~ 253 (706)
+||.+. .++.+ ..|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 56654 4699999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 254 p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
+ .. ...||++++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 6 34 5679999999 899999999998764
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.2e-33 Score=333.31 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=163.3
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
..|+++|+++.|. +..+++|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 4699999999872 12367999999999999999999999999999999999999886 999999863 24
Q ss_pred EEEEecCCCC----CCCCCHHHHHHHHhhcc------------CC-----------------------------------
Q 005252 130 AAYVTQDDNL----IGTLTVRETISYSARLR------------LP----------------------------------- 158 (706)
Q Consensus 130 ~~yv~Q~~~l----~~~lTV~E~l~~~~~l~------------~~----------------------------------- 158 (706)
++|++|++.. ....|++|++.+..... ..
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997521 22458888876532100 00
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 005252 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (706)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~d~ 185 (706)
..+ + ....+++++++++.+||.+. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013567889999999742 455
Q ss_pred cccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeE
Q 005252 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (706)
Q Consensus 186 ~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~v 265 (706)
.+ ++|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++ |.|||++||++ +.+.++||++
T Consensus 898 ~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 RI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp CG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred Cc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 44 579999999999999999999999999999999999999999888665 57999999995 6778899999
Q ss_pred EEEeCCeEEEEcC
Q 005252 266 YLLSGGKTVYFGE 278 (706)
Q Consensus 266 ilL~~G~iv~~G~ 278 (706)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=5.3e-32 Score=317.26 Aligned_cols=196 Identities=26% Similarity=0.338 Sum_probs=148.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecCc
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKL 125 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----------------------G~~~~~~~~~G~I~~~G~~~~~ 125 (706)
.+.+|+|||++|++||++||+||||||||||+++|. |+.. ..|.|.++|.+...
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~----~~~~i~~~~~~~~~ 409 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH----LDKVIDIDQSPIGR 409 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG----CSEEEECCSSCSCS
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc----cCceeEeccccCCC
Confidence 356899999999999999999999999999998764 2222 24678888765321
Q ss_pred C----------------------------------------------cCcEEEEecCCCCCC------------------
Q 005252 126 S----------------------------------------------FGTAAYVTQDDNLIG------------------ 141 (706)
Q Consensus 126 ~----------------------------------------------~~~~~yv~Q~~~l~~------------------ 141 (706)
. ....|++.|+..+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (670)
T 3ux8_A 410 TPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRET 489 (670)
T ss_dssp STTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHH
T ss_pred CCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhh
Confidence 0 001244444433322
Q ss_pred --------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHH
Q 005252 142 --------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (706)
Q Consensus 142 --------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia 206 (706)
.+||+||+.+.... ...+++.+.++.+||.. ..++ .+.+|||||||||+||
T Consensus 490 ~~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 490 LEVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLA 555 (670)
T ss_dssp HTCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHH
T ss_pred hheeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHH
Confidence 47999999875321 12245667888899864 3344 4457999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEc
Q 005252 207 LEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFG 277 (706)
Q Consensus 207 ~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G 277 (706)
|||+.+| ++|||||||+|||+.++..+++.|++++++|+|||++||++ .. .+.||+|++| ++|++++.|
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEec
Confidence 9999987 59999999999999999999999999988899999999996 34 4779999999 899999999
Q ss_pred CchhHH
Q 005252 278 ETSAAF 283 (706)
Q Consensus 278 ~~~~~~ 283 (706)
+++++.
T Consensus 634 ~~~~~~ 639 (670)
T 3ux8_A 634 TPEEVA 639 (670)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-31 Score=305.50 Aligned_cols=188 Identities=26% Similarity=0.312 Sum_probs=145.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCc-----CcC--c
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-----SFG--T 129 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~~~G~~~~~-----~~~--~ 129 (706)
....|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+| .+.|..... ..+ .
T Consensus 90 ~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (608)
T 3j16_B 90 NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165 (608)
T ss_dssp TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCC
T ss_pred CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhh
Confidence 345677777 58999999999999999999999999999986 7887 233332100 001 1
Q ss_pred EEEEecCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 130 AAYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 130 ~~yv~Q~~~l------~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
..+.+|.... -+..++.+++.... . +..++++++++.+||.+..|+.+ ..|||||||||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv 230 (608)
T 3j16_B 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRF 230 (608)
T ss_dssp CEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHH
T ss_pred hhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHH
Confidence 2233443211 11235666554321 0 11256889999999998888765 46999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEE
Q 005252 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 204 ~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++..++|+|++|++|..++
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999999988899999999995 68899999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=9.8e-31 Score=297.94 Aligned_cols=173 Identities=21% Similarity=0.258 Sum_probs=139.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEecCc-------CcCcEEEEecCC---
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-------SFGTAAYVTQDD--- 137 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~~~yv~Q~~--- 137 (706)
.++||++||+||||||||||||+|+|+++|+ +|+| .++|++... ....+..+.|..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 5699999999999999999999999999986 7988 567754310 112244444442
Q ss_pred -CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEE
Q 005252 138 -NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216 (706)
Q Consensus 138 -~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~ll 216 (706)
.++. .||+|++.... .+++++++++.+|+.+..|+.++ .|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333 38888764211 11346788999999988887654 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEE
Q 005252 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 217 llDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv 274 (706)
||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 99999999999999999999999976 89999999996 6889999999999876543
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=1.9e-29 Score=298.66 Aligned_cols=208 Identities=26% Similarity=0.311 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~---------~~~~--~~~G--- 114 (706)
..|+++|++ ...|+|||++|++|++++|+|+||||||||+++|. |.+ .++. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357778764 23699999999999999999999999999999853 211 1221 1234
Q ss_pred ---EEEECCEecCcC------------------------cCcEEEEecCCCCC----------------------C----
Q 005252 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (706)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~~~yv~Q~~~l~----------------------~---- 141 (706)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 588888764210 02246666642221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 005252 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (706)
Q Consensus 142 ----------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 192 (706)
.+||.|++.|... . . ..+++.++++.+||.. ..++. +
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~-----~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQP-----A 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCC-----G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCc-----h
Confidence 3578888876422 1 1 1234578999999976 45554 4
Q ss_pred CCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE-
Q 005252 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL- 268 (706)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +. .+.||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~-i~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH-HHhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999998899999999996 44 4789999999
Q ss_pred -----eCCeEEEEcCchhHH
Q 005252 269 -----SGGKTVYFGETSAAF 283 (706)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (706)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999988754
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=2.6e-29 Score=297.22 Aligned_cols=208 Identities=29% Similarity=0.330 Sum_probs=156.2
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C----------
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRLA-------S--N---------- 109 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-LaG~~~-------~--~---------- 109 (706)
..|+++|+++ .+|+|||++|++||++||+|+||||||||++. |+|.+. + +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588898863 26999999999999999999999999999996 765431 1 0
Q ss_pred ---CCcee-------EEEECCEecCcCc----------------------------------------------CcEEEE
Q 005252 110 ---AFLSG-------TILLNGHKTKLSF----------------------------------------------GTAAYV 133 (706)
Q Consensus 110 ---~~~~G-------~I~~~G~~~~~~~----------------------------------------------~~~~yv 133 (706)
...+| .|.++|.+..... +..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 11367 7899987642110 001222
Q ss_pred ecCCCCCC------------------------C--------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005252 134 TQDDNLIG------------------------T--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (706)
Q Consensus 134 ~Q~~~l~~------------------------~--------lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (706)
..+..+++ . +|+.|++.|... ....+++.++++.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCc
Confidence 22222222 2 345555444211 112346789999999976
Q ss_pred c-ccccccCcccCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005252 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (706)
Q Consensus 182 ~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~ 257 (706)
. .++ .+..|||||||||.||++|+.+ |+||||||||+|||..+...+++.|++++++|.|||+++|++ ++
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 3457999999999999999996 799999999999999999999999999998899999999995 55
Q ss_pred HHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 258 i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
+ +.||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999987653
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.1e-28 Score=294.02 Aligned_cols=200 Identities=26% Similarity=0.336 Sum_probs=152.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEecCc-----
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~LaG~~~~~~---~~~------G~I~~~G~~~~~----- 125 (706)
...|+|||+++++|++++|+|+||||||||+ +.+.+...+.. ..+ +.|.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44444332210 112 335555443210
Q ss_pred -----------------------------------------CcCcEEEEecCCCCCCC----------------------
Q 005252 126 -----------------------------------------SFGTAAYVTQDDNLIGT---------------------- 142 (706)
Q Consensus 126 -----------------------------------------~~~~~~yv~Q~~~l~~~---------------------- 142 (706)
..+..|++.|+..+++.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00124788887766653
Q ss_pred ----------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005252 143 ----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 143 ----------lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
+||.|++.|.... ....++.++|+.+||.... +| ..+..|||||||||+||++|+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 6788888875321 1235677899999996421 22 24567999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 213 p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +. .+.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999998899999999996 44 4669999999 899999999998865
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=8.2e-29 Score=294.32 Aligned_cols=209 Identities=25% Similarity=0.332 Sum_probs=154.5
Q ss_pred eEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee---
Q 005252 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-S----RLA-----SNA--FLSG--- 114 (706)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G----~~~-----~~~--~~~G--- 114 (706)
..|+++|++ ..+|+|||++|++|+++||+|+||||||||+++|. | .+. ++. ...|
T Consensus 646 ~~L~v~~l~----------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGAR----------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEEC----------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCc----------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 357888874 23699999999999999999999999999999853 2 221 110 0112
Q ss_pred ---EEEECCEecCcC------------------------cCcEEEEecCCCC----------------------CC----
Q 005252 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNL----------------------IG---- 141 (706)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~~~yv~Q~~~l----------------------~~---- 141 (706)
.|.++|.++... .+..||++|...+ ++
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 355665543100 0123555554221 11
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 005252 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (706)
Q Consensus 142 ----------------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 192 (706)
.+||.|++.|.... . ..+++.++++.+||.. ..++. +
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~--~~~~~~~~L~~lgL~~~~l~~~-----~ 861 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------A--GVHRYLRTLVDVGLGYVRLGQP-----A 861 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------H--HHHHHHHHHHHTTGGGSBTTCC-----G
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------h--HHHHHHHHHHHcCCCcccccCc-----c
Confidence 35777777764321 1 1234578899999976 44554 4
Q ss_pred CCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE-
Q 005252 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL- 268 (706)
..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ ..+ +.||+|++|
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLG 939 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEC
Confidence 579999999999999999865 99999999999999999999999999998899999999996 444 789999999
Q ss_pred -----eCCeEEEEcCchhHHH
Q 005252 269 -----SGGKTVYFGETSAAFE 284 (706)
Q Consensus 269 -----~~G~iv~~G~~~~~~~ 284 (706)
++|++++.|+++++..
T Consensus 940 p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 940 PEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSSTTSCSEEEEEECHHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHHh
Confidence 6899999999987653
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.5e-27 Score=263.48 Aligned_cols=204 Identities=23% Similarity=0.253 Sum_probs=146.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 113 (706)
..+|+++|+++.+| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999997766421 0126
Q ss_pred eEEEECCEecCc------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccC-----------------------CCCCC--
Q 005252 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----------------------PDKMP-- 162 (706)
Q Consensus 114 G~I~~~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~-----------------------~~~~~-- 162 (706)
|++.+||++... ....+++++|++.++.. +..+...|.-.... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999997532 12348999999876543 55554444211100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 005252 163 --------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (706)
Q Consensus 163 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------d~---~vg~-- 189 (706)
.+.....+.+.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001123455556666664310 00 1110
Q ss_pred ----cccCC-CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhC
Q 005252 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (706)
Q Consensus 190 ----~~~~~-LSGGerqRv~Ia~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~ 262 (706)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+|||+| ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 689999999996 456889
Q ss_pred CeEEEE----eCCeEEEEc
Q 005252 263 DRLYLL----SGGKTVYFG 277 (706)
Q Consensus 263 D~vilL----~~G~iv~~G 277 (706)
|++++| .+|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-30 Score=290.55 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=147.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEecCcCcCcEEEEecCCC---CCCCCCHHH
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVRE 147 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~-I~~~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 147 (706)
.++|+++++|++++|+||||||||||+|+|+|+..+. +| + |.+||.. ++.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 4788999999999999999999999999999998874 89 9 9999832 356899999984 445679999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE- 220 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a--L~~~p~l----lllDE- 220 (706)
|+ |+....... . ..+++.++++.+||.+..+ +.+|||||||||+||++ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 1133556677788876654 34799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc--h---HHHhhCCe-----EEEEe-CCeEEEEcCchhH
Q 005252 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--S---EVFELFDR-----LYLLS-GGKTVYFGETSAA 282 (706)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~--~---~i~~~~D~-----vilL~-~G~iv~~G~~~~~ 282 (706)
||++||+. ...+.+.+++ .|.|+|+++|+.. - ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4444444443 3789999999975 1 56689999 99999 99999 8988665
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=4.3e-24 Score=232.60 Aligned_cols=83 Identities=34% Similarity=0.479 Sum_probs=76.7
Q ss_pred ccCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCe
Q 005252 191 HLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~ 264 (706)
.+.+|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|++++++|.|||++||++ . ..+.+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCCE
Confidence 56689999999999999999 79999999999999999999999999999988899999999996 3 4788999
Q ss_pred EEEEeCCeEEE
Q 005252 265 LYLLSGGKTVY 275 (706)
Q Consensus 265 vilL~~G~iv~ 275 (706)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=6.9e-28 Score=242.47 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=100.9
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EecCcCcCcEEEEecCCCCCCCCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--HKTKLSFGTAAYVTQDDNLIGTLT 144 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G--~~~~~~~~~~~yv~Q~~~l~~~lT 144 (706)
+.+.+|+|+ ++||+++|+|||||||||||++|+|+ +|+ +|+|.... .+.....+.++||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 346799996 89999999999999999999999999 774 78873211 11112235689999975
Q ss_pred HHHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 005252 145 VRETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (706)
Q Consensus 145 V~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllD 219 (706)
+||+ .+.. .+. .... .++++++++. | + ||||||+|||+|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4454 2211 111 0000 1234555543 2 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 220 EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
|||+| ++..+.+.|+++ ++|+||| +||++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 889999999988 6789999 999963
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=4e-24 Score=228.91 Aligned_cols=90 Identities=28% Similarity=0.256 Sum_probs=73.8
Q ss_pred ccCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeE-
Q 005252 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (706)
Q Consensus 191 ~~~~LSGGerqRv~Ia~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~v- 265 (706)
.+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|++++ +|.|||++||++ ++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34579999999999999997 5889999999999999999999999999985 589999999995 467899987
Q ss_pred -EEEeCCeE-EEEcCchhHH
Q 005252 266 -YLLSGGKT-VYFGETSAAF 283 (706)
Q Consensus 266 -ilL~~G~i-v~~G~~~~~~ 283 (706)
++|.+|.. +.....+++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEESSSCEEEEECCC----
T ss_pred EEEEeCCEEEEEEEEcchhh
Confidence 77877754 4445555433
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=7.3e-29 Score=262.71 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=148.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCccccCCCCCcchhhhhhcccccCCCCceeEEEEEeEEEEEEccCCccccceeceEEEEeC
Q 005252 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (706)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (706)
++.+|++||.++++.++.... +..+ |.. ....|+++||++.+ + +.+|+|+|+++++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~----~~~~-----~~~---------~~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT----GEGS-----WKS---------ILTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC----SSCC-----THH---------HHHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC----CCCc-----ccc---------cCCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 678899999999987654221 0000 110 01136678888776 2 5699999999999
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH-HHHHHhhccCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E-~l~~~~~l~~~~~ 160 (706)
|++++|+||||||||||+++|+|++ +|+|. +|++|++.++.. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~-------------~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL-------------SFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEEE-------------CGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceEE-------------EEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999987 47773 467888888775 8887 7765311
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005252 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 240 (706)
.+. .+.+.++.+ |.+..| | ..|||||||| ||+|+.+|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 345566654 554444 2 4799999999 999999999999 99999999988862
Q ss_pred HhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHHHh
Q 005252 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (706)
Q Consensus 241 ~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f~~ 288 (706)
.+|++. ..+.+|+| +|++|++++.|+.++....|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 188864 46889999 9999999999999887555544
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=9.6e-25 Score=212.42 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=99.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCC-CCCCHHHHHHHH
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRETISYS 152 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 152 (706)
|||+++++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998642 11112111 1125666664210 0001112111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~---- 228 (706)
... +.....|.....+. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 12223454433332 1236999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
....+.+.|++++++|.|+|++||++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 56889999999987799999999996
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=2.5e-26 Score=252.83 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=136.5
Q ss_pred ccceeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcC
Q 005252 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 128 (706)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999885 899999987642 1
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH--HHHHHHHH
Q 005252 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (706)
Q Consensus 129 ~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG--erqRv~Ia 206 (706)
.+|++|++ .++.+|+.|++.++.. +..++++++.+++.+. +.. +. |||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5678899998755421 1246788999998764 222 12 8999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCch-HHHhhCCeE
Q 005252 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRL 265 (706)
Q Consensus 207 ~aL~~----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvI~~~H~p~~-~i~~~~D~v 265 (706)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|+|
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 332 678899998642 255666655
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=1.9e-23 Score=205.09 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=101.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---cC--cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~---~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (706)
.++|+||||||||||+++|+|.+. |.++|.+ .. ...+.++|++|+. ++.+++ + +.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 2233322 11 2235689999975 222332 1 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHH
Q 005252 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAF 231 (706)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a-----L~~~p~llllDE--PTsgLD~~~~~ 231 (706)
.. -.+..+. ++..||||||||++||++ |+.+|++++||| ||++||+....
T Consensus 64 --~~----------------~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~ 120 (178)
T 1ye8_A 64 --FT----------------SKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120 (178)
T ss_dssp --CC----------------CSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHH
T ss_pred --CC----------------ccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHH
Confidence 00 0012222 445799999999999996 999999999999 99999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeC--CCchHHHhhCCeEEEEeCCeEEE
Q 005252 232 FVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~~H--~p~~~i~~~~D~vilL~~G~iv~ 275 (706)
.+.+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 121 ~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 121 LVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 99888865 4678999997 235677778887 5566654
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=8.8e-26 Score=226.23 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=120.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-CcCcCcEEEEecCCCCCCCCCHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
.+++++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+. ....+.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 4567888 68999999999999999999999999999852 233332323221 11235689999998888888888
Q ss_pred HHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEE
Q 005252 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (706)
Q Consensus 147 E~l~~~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~lll 217 (706)
|++........ ....++++.++++++. ++.+|+.+..+.. ++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 77642211100 0012344445555554 4445554444443 34566 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 218 lDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++|++ +++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 68999999999985
No 74
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=2.2e-21 Score=229.65 Aligned_cols=111 Identities=24% Similarity=0.368 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005252 165 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (706)
Q Consensus 165 ~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (706)
+..++++ .+..+||... .++.+ ..|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445565 6888999764 56654 469999999999999999999 5999999999999999999999999999
Q ss_pred hCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 242 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 242 ~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
+.|.|||+++|++ + +.+.+|+|++| ++|++++.|++++..
T Consensus 429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8899999999996 3 56789999999 799999999988754
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=5.7e-23 Score=218.02 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=132.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--------C---cCcEEEEecCCC-C
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--------S---FGTAAYVTQDDN-L 139 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--------~---~~~~~yv~Q~~~-l 139 (706)
++++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+... . +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999998875 7999999976421 0 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEE
Q 005252 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~--lll 217 (706)
++.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 88899999998864211 00 12455677766655544 4689 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc--------hHHHhhCCeEEEEeCCeE
Q 005252 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~--------~~i~~~~D~vilL~~G~i 273 (706)
|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999998754 345553 5899999999422 233455678888888764
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=8.6e-23 Score=213.34 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=96.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc--CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (706)
.++|+||||||||||+|+|+|...+. +|+|.++|++... ..+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 47999999999999999999998885 8999999986432 24679999999999999999999998754321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005252 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (706)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (706)
.. +.+.+.+. .+..+... ..||||||||++|||+++. ++++||||+|||+.. .+.++++.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 22333332 22333333 4699999999999999876 999999999999987 56666676
Q ss_pred hCCCEEEEEeCCC
Q 005252 242 RDGRTVIASIHQP 254 (706)
Q Consensus 242 ~~g~tvI~~~H~p 254 (706)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999973
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=2e-23 Score=232.08 Aligned_cols=189 Identities=16% Similarity=0.113 Sum_probs=149.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecCc--
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~-- 125 (706)
.++.+|+++.+. ....+|+++ +.+.+||+++|+|||||||||||++|+|..+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 477888887762 246799999 999999999999999999999999999999886 899999998 3211
Q ss_pred --------CcCcEEEEecC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 005252 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (706)
Q Consensus 126 --------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 196 (706)
..+.++||+|+ +.+++.+||.+|+.+.+...... .+.+ ....|. ...+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld~------l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMDS------LTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEEC------HHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHHh------HHHHH
Confidence 13568999995 56677889999998865432000 0000 011121 34599
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCchHHHhhCCeEEE
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvI~~~H~p~~~i~~~~D~vil 267 (706)
+|| |||+|| +.+|++ |+|||+.....+.+.++++.+ + |. ||++++||.. ...+|+++.
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999876 3 64 9999999975 578999999
Q ss_pred EeCCeEEEEcCchhH
Q 005252 268 LSGGKTVYFGETSAA 282 (706)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (706)
|.+|+++..|++.+.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999877543
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=3.8e-20 Score=200.54 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=76.4
Q ss_pred cccC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHH
Q 005252 190 WHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (706)
Q Consensus 190 ~~~~-~LSGGerqRv~Ia~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~ 259 (706)
..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . .
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~-- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P-- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T--
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c--
Confidence 3455 69999999999999999 8999999999999999999999999998874 699999994 3 2
Q ss_pred hhCCeEEEEeCCeEEEEcCchhH
Q 005252 260 ELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 260 ~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
.+|++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=5.7e-22 Score=214.56 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=132.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----------CcCcEEEEecCCC-CC
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDN-LI 140 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----------~~~~~~yv~Q~~~-l~ 140 (706)
+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998875 7999999976421 0235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEE
Q 005252 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~--llll 218 (706)
+.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 8899999999864311 00 12445577766655544 4689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC--------chHHHhhCCeEEEEeCCeE
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p--------~~~i~~~~D~vilL~~G~i 273 (706)
| ||+|||+.+.. +++.+ .|.|+|++||.. .+.+....+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999987653 44543 589999999942 1233455677888877754
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=6e-22 Score=212.77 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=105.8
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-Cc--CcCcEEEEecCCCCCCCCCHHH
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-~~--~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|.++|.+. .. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999885 89999998641 00 011222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
.++.+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777654458999999975 678899999998775
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=1.8e-19 Score=194.25 Aligned_cols=80 Identities=30% Similarity=0.349 Sum_probs=71.3
Q ss_pred ccCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCe
Q 005252 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 191 ~~~~LSGGerq------Rv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~ 264 (706)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45689999999 66778888889999999999999999999999999999987789999999994 47889999
Q ss_pred EEEEe--CCe
Q 005252 265 LYLLS--GGK 272 (706)
Q Consensus 265 vilL~--~G~ 272 (706)
++.|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99996 454
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=3.6e-24 Score=216.67 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=98.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC------cCcCcEEEEecCCCCCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------LSFGTAAYVTQDDNLIGT 142 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~------~~~~~~~yv~Q~~~l~~~ 142 (706)
..-|+|||+++++|++++|+||||||||||+++|+|++ | |+|.+ |.+.. ...+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 65421 113468899998766554
Q ss_pred CC-HHHHHHH---HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHH-----HHHHhhCC
Q 005252 143 LT-VRETISY---SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRP 213 (706)
Q Consensus 143 lT-V~E~l~~---~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~I-----a~aL~~~p 213 (706)
++ +.+++.+ ..... ..+. ..++++++...+ ..+. ..+|||||||++| +++++.+|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 32 1111111 01100 1111 235566654322 1111 3689999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005252 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (706)
Q Consensus 214 ~llllDEPTsgLD~~~~~~i~~~L~~l~~ 242 (706)
++++|||||+++|..+...+.+.|+++.+
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=6.1e-20 Score=219.04 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=125.5
Q ss_pred HHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCH-----HHHHHHHHH
Q 005252 98 LLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW-----SEKRTLVER 172 (706)
Q Consensus 98 LL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~-----~~~~~~v~~ 172 (706)
...|..+++.+. .|+|.++|+++.. +..+||.|++.|...+.++..... .+..+...+
T Consensus 384 C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 344555666664 7999999987532 245689999888655433221100 011133456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 005252 173 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249 (706)
Q Consensus 173 ~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~ 249 (706)
.+..+||... .++.+ ..|||||||||.||++|+++|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888999754 46544 4699999999999999999887 99999999999999999999999999888999999
Q ss_pred EeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHHH
Q 005252 250 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (706)
Q Consensus 250 ~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~~ 284 (706)
++|++ +. ...+|+|++| ++|++++.|+++++..
T Consensus 522 VtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 522 VEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp ECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99995 44 4669999999 8999999999987653
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=2.2e-19 Score=204.16 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.3
Q ss_pred ccCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEE
Q 005252 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (706)
Q Consensus 191 ~~~~L-SGGerqRv~Ia~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vil 267 (706)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||+|. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999963 5568999999
Q ss_pred EeCC
Q 005252 268 LSGG 271 (706)
Q Consensus 268 L~~G 271 (706)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.79 E-value=1.2e-20 Score=199.07 Aligned_cols=183 Identities=12% Similarity=0.114 Sum_probs=119.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecCc--CcCcEEEEecCCCCCCCCCH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 145 (706)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999988664 46 56543322110 0111222222221 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 005252 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (706)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRv~Ia~aL~~~p~llllDEPTs- 223 (706)
.+++.... + +.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33333221 1 1223334445544322221 111 123588998 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCCc-h--------------------HHHhhCCeEEEEeCCeE
Q 005252 224 --G---LDS-AAAFFVTQTLRCLSRD-GRTVIASIHQPS-S--------------------EVFELFDRLYLLSGGKT 273 (706)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~~-g~tvI~~~H~p~-~--------------------~i~~~~D~vilL~~G~i 273 (706)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6778899999999864 999999999951 3 57789999999998874
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=1.2e-21 Score=208.89 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=111.3
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEE-----------------------EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGY-----------------------AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.|+++||++.| .++++++++. +++|+++||+||||||||||+++|+|++.
T Consensus 43 ~i~~~~v~~~y-------~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 43 QIDLLEVEEVY-------LPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEeeehhhhh-------hhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 47778887766 2355555553 79999999999999999999999999987
Q ss_pred CCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005252 108 SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVI 187 (706)
Q Consensus 108 ~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v 187 (706)
+. .|. +.++||+|++.+++. |++||+.+.... ..+.....+.+.+.++.++ .+..+..+
T Consensus 116 ~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~d~~~~~~~L~~l~-~~~~~~~~ 174 (312)
T 3aez_A 116 RW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESYNRRALMRFVTSVK-SGSDYACA 174 (312)
T ss_dssp TS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGBCHHHHHHHHHHHH-TTCSCEEE
T ss_pred cc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHHHHHHHHHHHHHhC-CCcccCCc
Confidence 63 331 458999999999888 999998643211 1222333456778888887 44444443
Q ss_pred cCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 188 g~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
..|||||+||+++|++++.+|+|||+|||++.+|+
T Consensus 175 -----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 175 -----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 46999999999999999999999999999999986
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.9e-19 Score=205.11 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=119.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~~---~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNAY---SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHHH---TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHHH---Hc
Confidence 5589999999999999999999999999987552 32 12456667641 12333321 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 005252 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (706)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~-----~~ 230 (706)
..+ +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 112 234566554444 45679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc---------hHHHhhCCeEEEEeCCe
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p~---------~~i~~~~D~vilL~~G~ 272 (706)
..+.++++.+++.|.|||+++|++. ..+..++|+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999889999999999971 45667899999999887
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=9.4e-21 Score=194.64 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=108.5
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
+.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4577999999999999999999999999999999999975 223333 1235689999995 67789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD 226 (706)
|++.+....... ..+.+...+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 999875432110 111111123344455543 3334443 35699999999988 57888999999999998888
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHh-hCCeEEEEeCCeEEEEcCchhHHH
Q 005252 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~-~~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.. +.++ .+.+|++++|+.. .+.+ +++++ .+|+ +.+++.+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHH
Confidence 63 2222 3789999999743 3333 34434 5564 4555554
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=4.9e-20 Score=223.18 Aligned_cols=172 Identities=19% Similarity=0.130 Sum_probs=120.3
Q ss_pred EEEEEe-----EEEEEEccCCccccceeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005252 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (706)
Q Consensus 51 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 118 (706)
.|+++| |++.+. +.+.|++|+++.+++ |++++|+||||||||||||+| |+..+
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 489999 887763 346799999999987 999999999999999999999 87642
Q ss_pred CCEecCcCcCcEE-EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 005252 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (706)
Q Consensus 119 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG 197 (706)
...+| ||||+.. .+||.|++.. + +|+.+..+. ....+|+
T Consensus 815 --------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp --------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHH
T ss_pred --------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHH
Confidence 02234 9999753 4566555421 1 122211111 1124677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCchHHHhhCCeEEEEeCCeEE-
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv- 274 (706)
+++ ++++|++++++|+++||||||+|+|+... ..++..|+.++++ |.++|++||++ +.+..++|++.++ +|++.
T Consensus 855 em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 665 49999999999999999999999999985 5578899999876 99999999995 5667789998886 58887
Q ss_pred -EEcCch
Q 005252 275 -YFGETS 280 (706)
Q Consensus 275 -~~G~~~ 280 (706)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=2.6e-18 Score=203.90 Aligned_cols=135 Identities=27% Similarity=0.391 Sum_probs=110.9
Q ss_pred CCCCHHHHHHHHhhccCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhCC
Q 005252 141 GTLTVRETISYSARLRLPDK---MP---WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p 213 (706)
..+||.|++.|...+.++.. .. .++..+++ +.+..+||... .|+.++ .|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 35899999999776653320 00 02344555 45889999754 576554 69999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHH
Q 005252 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (706)
Q Consensus 214 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~ 283 (706)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ .+.+|+|++| ++|++++.|++++..
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999996 44 5689999999 799999999998754
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=1.4e-18 Score=208.04 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=112.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La--------G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l 139 (706)
.+.|++|+++.+++|++++|+||||||||||||+++ |...|. ++.. ++. -+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~-------------~~~---~d~- 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE-------------VSI---VDC- 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE-------------EEC---CSE-
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc-------------chH---HHH-
Confidence 467999999999999999999999999999999993 433221 1100 000 000
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH--hhCCCEEE
Q 005252 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLF 217 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL--~~~p~lll 217 (706)
++..+|+.+. ..+++|+|+++++.+|++| +++|+++|
T Consensus 708 ---------------------------------i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 708 ---------------------------------ILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------------------HHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 1111222211 1236888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 218 LDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 218 lDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
|||||+|||+.....+ ..+++.+++ .|.|+|++||+. ++.+++|++..+.+|++.+.++.+++
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999999888 677788876 499999999994 56789999999999999988877654
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=1.5e-21 Score=222.35 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=117.6
Q ss_pred ccccceeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEecCc----CcCcEEEEecCCCC
Q 005252 67 ETHNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNL 139 (706)
Q Consensus 67 ~~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l 139 (706)
...++|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|+|+++|++... ..+.+||++|+...
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhc
Confidence 34679999999 999999999999999999999999 78998765 8999999976321 12457889887432
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 005252 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllD 219 (706)
.+ ++.+ ..... .. ...++++.++|.+..+.. ++.|||| +|+++++|
T Consensus 100 ~~------~l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilD 145 (525)
T 1tf7_A 100 EG------KLFI---LDASP--DP-----EGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSID 145 (525)
T ss_dssp TT------SEEE---EECCC--CS-----SCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEE
T ss_pred cC------cEEE---EecCc--cc-----chhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEEC
Confidence 11 1100 00000 00 001111222222222221 1234554 58899999
Q ss_pred CCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH--------HHhhCCeEEEEeCCe
Q 005252 220 EPTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSGGK 272 (706)
Q Consensus 220 EPTs-----gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~--------i~~~~D~vilL~~G~ 272 (706)
|||+ +||+..+..+.+++++++++|+|||+++|++... ...+||+|++|++|+
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 9998 5699999999999999988899999999997532 345699999999843
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.75 E-value=5.1e-20 Score=198.87 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=137.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----- 125 (706)
.++.+++++.+. ....+|+++ +.+.+||+++|+||||||||||+++|+|...++ .|.|.+.|++...
T Consensus 45 ~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred CeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHH
Confidence 477888888873 246799999 999999999999999999999999999999886 8999999864110
Q ss_pred -------CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH
Q 005252 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (706)
Q Consensus 126 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG 198 (706)
..+.+.++.|.+. +..+.+.-... .....+.....+ .+... .+ ..+..+|+|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g 175 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYARA 175 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHHH
Confidence 1134677777542 23332221100 000111111111 11110 00 134569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 199 erqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
| ||+++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++||.. ..+||+++.+.+|
T Consensus 176 ~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG 242 (347)
T 2obl_A 176 A-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDG 242 (347)
T ss_dssp H-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSE
T ss_pred H-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCc
Confidence 9 899999 688877 999999999999999999974 477 9999999975 5679999999999
Q ss_pred eEEEEcCchhH
Q 005252 272 KTVYFGETSAA 282 (706)
Q Consensus 272 ~iv~~G~~~~~ 282 (706)
+++..|+.++.
T Consensus 243 ~Ivl~~~l~~~ 253 (347)
T 2obl_A 243 HIVLTRELAEE 253 (347)
T ss_dssp EEEBCHHHHTT
T ss_pred EEEEeCCHHHc
Confidence 99999877654
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=4.1e-18 Score=202.90 Aligned_cols=137 Identities=25% Similarity=0.347 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHhhccCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005252 140 IGTLTVRETISYSARLRLPDKMP------WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 140 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
+..+||.|.+.|...+.++.... .++..+++ +.+..+||... .|+.+ ..|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhC
Confidence 34579999999865543221000 02344555 35788999754 56654 46999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE------eCCeEEEEcCchhHHH
Q 005252 213 --PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (706)
Q Consensus 213 --p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL------~~G~iv~~G~~~~~~~ 284 (706)
|++|+|||||+|||+.....+.+.|++|++.|.|||+++|++ +. .+.+|+|++| ++|++++.|++++...
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 589999999999999999999999999998999999999996 44 5689999999 7999999999987653
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=1.3e-19 Score=184.81 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=104.8
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEecCc----CcCcEEEEecCCCCCCCC
Q 005252 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (706)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La--G~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~l 143 (706)
.|+++ .+-+++|++++|+||||||||||+++|+ |...++ +|.+.+++..... ..+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34444 2479999999999999999999999999 653343 5677776653211 112345666654333444
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005252 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (706)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs 223 (706)
++.++....... ....... . ....+.++..+...+..-..+|+++++||||+
T Consensus 95 ~~~~~~~~~~~~----------~~~~~~~-------------~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 95 AIVDGVSSVVGL----------PSEEKFV-------------L-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp EEEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHH
T ss_pred EEEEcccccccc----------cccccee-------------c-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHH
Confidence 443332211000 0000000 0 01133455444444444468999999999999
Q ss_pred CCC-----HHHHHHHHHHHHHHHhCCCEEEEEeCCCchHH---------HhhC-CeEEEEe
Q 005252 224 GLD-----SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV---------FELF-DRLYLLS 269 (706)
Q Consensus 224 gLD-----~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i---------~~~~-D~vilL~ 269 (706)
+|| ...+..+.++++.++++|+|||+++|+.. ++ ..+| |++++|+
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 998 67777799999999888999999999964 45 5788 9999995
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=6.2e-18 Score=160.75 Aligned_cols=82 Identities=28% Similarity=0.314 Sum_probs=73.5
Q ss_pred cccCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCC
Q 005252 190 WHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (706)
Q Consensus 190 ~~~~~LSGGerqRv~Ia------~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D 263 (706)
..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 35678999999999876 899999999999999999999999999999999977789999999996 4678999
Q ss_pred eEEEE--eCCeE
Q 005252 264 RLYLL--SGGKT 273 (706)
Q Consensus 264 ~vilL--~~G~i 273 (706)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=4.1e-19 Score=178.89 Aligned_cols=154 Identities=21% Similarity=0.168 Sum_probs=95.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|+++++... ..+.+++++|+..+++. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 5799999999999999999999999999544310 12345666554210 01122333333222222 222222110
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRv~Ia~aL~~-------~p~llllDEPTsg 224 (706)
...++++ ++++..+.+++. +|+++++||||++
T Consensus 98 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 98 ----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1123333 333555666655 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCc---hHHHhhCCeEEEEeCCe
Q 005252 225 LDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (706)
Q Consensus 225 LD~~-------~-----~~~i~~~L~~l~~-~g~tvI~~~H~p~---~~i~~~~D~vilL~~G~ 272 (706)
+|+. . ...+++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 2378888888865 5999999999532 23678899999998753
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.72 E-value=1.2e-18 Score=181.16 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=99.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHH
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
.+|+++| +++|++++|+||||||||||+++|+|.+++. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 5899999 9999999999999999999999999998762 1799999886542 233321100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
. + . ..+|++. ..+ |++||++|..+|+++++|||| |..+
T Consensus 75 -----v--~----q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V--N----Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E--E----E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e--e----H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 0 0 0123321 122 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeC
Q 005252 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (706)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~ 270 (706)
...++ +. +..|.+|++++|++. +...+|+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66544 33 357999999999964 5788999988853
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=4.1e-20 Score=184.67 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=113.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCC--CCCCHHHHHHHHhhcc
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~l~ 156 (706)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997642 478999998776 56899988765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe----rqRv~Ia~aL~~~p~llllDEPTsg-------L 225 (706)
.+ .....+++.+.++.+++.+..+.+ ...+|+|| +||++++++++.+|.++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 111234566777888876655543 34589996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEeCCC
Q 005252 226 DSAAAFFVTQTLRCL-SRDGRTVIASIHQP 254 (706)
Q Consensus 226 D~~~~~~i~~~L~~l-~~~g~tvI~~~H~p 254 (706)
|+.....+.+.+++. .++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999876 45789999999974
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=5.1e-19 Score=187.59 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=86.6
Q ss_pred EeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecCc--CcCcEE
Q 005252 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (706)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~--~~~~~~ 131 (706)
.||++.+ +.+.+++++++.+ +|+||||||||||++.|+|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3667766 4577999999998 99999999999999999997 5554 78 8888865321 234578
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh
Q 005252 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (706)
Q Consensus 132 yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~ 211 (706)
+++|++.+...+||.|+..++..... .+..+..++.+. +..+. +.+++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 99999888888999999887643210 011111122211 11233 34579999999999888875
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCc
Q 005252 212 RPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (706)
Q Consensus 212 ~p~llllDEPTsg-LD~~~~~~i~~~L~~l~~~-g~tvI~~~H~p~ 255 (706)
++++||||++ ||+... +.++++.++ +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999984 999873 566666553 788999999964
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=2.9e-17 Score=196.34 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=104.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.|++|+|+.+++|++++|+||||||||||||++++..-.. ..|. .... ..+.+..-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCChHH
Confidence 467999999999999999999999999999999998643110 0110 0000 0111111122222222111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
+ .+. ....+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus 728 ~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 N----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred H----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 1 111 123589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEE-EeCCeEEE
Q 005252 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVY 275 (706)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vil-L~~G~iv~ 275 (706)
.....+. .+++.+++ .|.|+|++||++ ++.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 9999998 77788865 699999999995 35566665421 33444433
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=6.3e-18 Score=199.14 Aligned_cols=145 Identities=22% Similarity=0.171 Sum_probs=105.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
++.+++|+|+. |++++|+||||||||||||+|+|+.. +. .|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--hhccceeeHHH---hhccCCHH
Confidence 46799999999 99999999999999999999999763 32 45432 1 11234666665 45555665
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL--~~~p~llllDEP--- 221 (706)
||+. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 14789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 222 TsgLD~~~~-~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
|++||..+. ..+++.|++ .|.|+|++||++ +..+++ .-.+.++++...
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEE
Confidence 999998875 567777765 589999999994 345555 222344555443
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=2.5e-18 Score=185.94 Aligned_cols=166 Identities=21% Similarity=0.169 Sum_probs=102.4
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEecCcCcCcEEEEecCCCCCCCCCH
Q 005252 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (706)
Q Consensus 71 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~-~~~G~-I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV 145 (706)
.|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |+++++... ..+.+++++|+..+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HH
Confidence 46665 6899999999999999999999999999986 3320 01267 788775431 12334555555443332 33
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-------hCCCEEEE
Q 005252 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLFL 218 (706)
Q Consensus 146 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~-------~~p~llll 218 (706)
.||+.+... --|.+|+|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 333322100 01456667777777766 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 219 DEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 219 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
||||+++|+.. ..++++.|+++++ .|.|||+++|... .....++......+|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 4566777777765 5899999999853 4444555666666777665443
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=7.1e-18 Score=178.97 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=105.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----------CcCcEEEEecCCCCCCCCCHHHHH
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----------~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
+|++++|+||||||||||++.|+|++.+. +|+|.++|.+... .+..++||+|++.++|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999875 8999999987421 013589999999888888999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~ 229 (706)
.++...... ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~d------------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGYD------------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTCS------------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCCC------------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 875321100 001222333222111 2455669999999999999994444 455555
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCC
Q 005252 230 AFFVTQTLRCLSR-DGRTVIASIHQP 254 (706)
Q Consensus 230 ~~~i~~~L~~l~~-~g~tvI~~~H~p 254 (706)
...+++.++++.+ .|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5567777777765 389999999985
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.65 E-value=1.7e-17 Score=196.50 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=108.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.+++|+|+. ++|++++|+||||||||||||+|+|..... ..| .........++++.| ++..+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 46799999999 999999999999999999999999974221 012 111111123445444 455556655
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
++..+ + ..+|+|++ +++.+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54221 0 12566665 45555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcC
Q 005252 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (706)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~ 278 (706)
.....+ ...++.+++ .|.++|++||++ ++.+++|++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 888776 788888887 499999999996 3567899887788888776543
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=7.8e-19 Score=203.12 Aligned_cols=191 Identities=14% Similarity=0.158 Sum_probs=116.7
Q ss_pred EEEEEeEEEEEEccCCccccceece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
.+.++||+..+.. ..+++|+.+ ++.++. +||+|||||||||||++|+|+..|. .+|+|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4778888887732 123344433 355554 9999999999999999999998672 289999999
Q ss_pred EecC--------cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 005252 121 HKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (706)
Q Consensus 121 ~~~~--------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 192 (706)
.+.. ..++.++|++|+..+++.+||+|++.++........ .++. +
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~-------- 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H-------- 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S--------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h--------
Confidence 8631 123568999999999999999999987643210000 0111 0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCCc------hHH
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPS------SEV 258 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllDEP------TsgLD~~~~~~i~~~L~~l~~--~g~tvI~~~H~p~------~~i 258 (706)
+++.++.+...+|+++++||| |+|||+.....+.++++++.+ .+.++++++|+.. ..+
T Consensus 135 --------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 135 --------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp --------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred --------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 111122222348999999999 999999999999999999754 3678889999853 112
Q ss_pred Hhh-----CCeEEEEeCCeEEEEcCchhHHH
Q 005252 259 FEL-----FDRLYLLSGGKTVYFGETSAAFE 284 (706)
Q Consensus 259 ~~~-----~D~vilL~~G~iv~~G~~~~~~~ 284 (706)
.+. ...|.++.++..+..|+.+++.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 222 24578888998888887655444
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=4.3e-17 Score=163.83 Aligned_cols=171 Identities=14% Similarity=0.077 Sum_probs=108.3
Q ss_pred ccceeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 69 HNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 69 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.+.+.+ . +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~--------------~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTE--------------E------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESS--------------S------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcc--------------c------CHHH
Confidence 457888885 89999999999999999999999999876542 4555443321 1 1111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGL 225 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~--llllDEPTsgL 225 (706)
......................++.....++ ... .....|.+|.++...+.....+|+ ++++||||+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 1111001100000000000000000000000 000 112359999998888888788999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCc-------hHHHhhCCeEEEEeCC
Q 005252 226 --DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (706)
Q Consensus 226 --D~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~-------~~i~~~~D~vilL~~G 271 (706)
|+.....+++.|+++++ .|.|||+++|+.. ..+.++||++++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999999999975 6999999999962 3478899999999754
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=8.4e-16 Score=160.63 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=105.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 157 (706)
-+++|++++|+||||||||||++.|++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 488999999999999999999999998553 35543 3443221 2457888776532 01222221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 005252 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (706)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs--gLD~~~~---~~ 232 (706)
.... ...+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... ..
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235567788888766554 3456999998876 68889999999999999 9997544 88
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC
Q 005252 233 VTQTLRCLSR-DGRTVIASIHQP 254 (706)
Q Consensus 233 i~~~L~~l~~-~g~tvI~~~H~p 254 (706)
+++.|+++++ .|.|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999874 599999999995
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=1.4e-18 Score=172.04 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=103.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (706)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.++|++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999986 4 68 888886532 2246789999975 121 1111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 005252 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (706)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv-~Ia~---aL~~~p~llllDE--PTsgLD~~~~~ 231 (706)
+..+ ..+..+|. +...+|+|||+++ ++++ |+..+|+++|+|| |+..+|....
T Consensus 67 -------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~- 125 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI- 125 (189)
T ss_dssp -------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH-
T ss_pred -------------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH-
Confidence 1111 11224443 3456999999988 4444 5789999999999 8988988654
Q ss_pred HHHHHHHHHHhCCCEEEE----EeCCCchHHHhhCCeEEEEeCCeEEEEc
Q 005252 232 FVTQTLRCLSRDGRTVIA----SIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (706)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~----~~H~p~~~i~~~~D~vilL~~G~iv~~G 277 (706)
+.|+++.++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 126 ---~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 ---QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ---HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ---HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444555444555553 238853 3567888888888887643
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=2e-16 Score=171.28 Aligned_cols=127 Identities=22% Similarity=0.261 Sum_probs=88.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-cCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....+++.|.......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-------------- 182 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT-------------- 182 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc--------------
Confidence 67899999999999999999999999998763 146665433332211 1122344443221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005252 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (706)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 236 (706)
++-.+ +||++|..+|++|++|||| |..+ ++.
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 11111 9999999999999999999 6555 444
Q ss_pred HHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 237 L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
+.+++..|+||++|+|+++ . .+.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 4555678999999999975 3 4889999988554
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.3e-17 Score=180.78 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=97.2
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcE
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 130 (706)
.|.++||++.+ +.+.+++|+|+.| +|+|+||||||||+|+|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 48889998877 4577999999998 99999999999999999998764311 2222222211 1112457
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh
Q 005252 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (706)
Q Consensus 131 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~ 210 (706)
++++|++.+++.+||.||+.++.... ..+....+.+.++. .++.+++||++||++++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------KFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHHH-----------------HHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhc
Confidence 89999988888899999988764321 01111112222211 25667788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005252 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (706)
Q Consensus 211 ~~p~---llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~ 253 (706)
.+|+ +|++|||| .|||+... +.++.+.. +.++|+++|.
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 9999 99999999 69998873 44555543 7888888886
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.56 E-value=1.8e-15 Score=149.95 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=98.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEecCcC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~~ 126 (706)
|+++|+++.+. ..+|++ +.+++|..++|+|+||||||||+|.|+|.. .+ ..|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-ec
Confidence 78899999883 357888 889999999999999999999999999986 33 356654322100 00
Q ss_pred cCcEEEEecCCCC----CCCCC---HHHHHHHHhhc-c----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005252 127 FGTAAYVTQDDNL----IGTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188 (706)
Q Consensus 127 ~~~~~yv~Q~~~l----~~~lT---V~E~l~~~~~l-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg 188 (706)
...-.+ +.+.+ .+.-. .+..+...... + .....+ .....+.++++..++... .++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~---~v~ 144 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVL---VLL 144 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEE---EEE
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeE---EEE
Confidence 001111 11110 00000 11222221110 0 001111 222345556666666532 122
Q ss_pred CcccCCCChHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 005252 189 NWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (706)
Q Consensus 189 ~~~~~~LSGGerqR-v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~t 246 (706)
+ ....+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 145 n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 T-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp E-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred e-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2 234689999999 89999999999999999999999999999999999998766543
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.52 E-value=3.4e-14 Score=138.41 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=68.1
Q ss_pred cCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEE
Q 005252 192 LRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vil 267 (706)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 46899999994 46789999987
Q ss_pred Ee--CCe
Q 005252 268 LS--GGK 272 (706)
Q Consensus 268 L~--~G~ 272 (706)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.52 E-value=4.5e-16 Score=157.49 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=98.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-CcCcEEEEecCCCCCCCCCH----HHHHH
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RETIS 150 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~E~l~ 150 (706)
.-..++|++++|+||||||||||+++|+|..+|+ ...|.|.+++.+... ..+.++|++|++..|+.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999998752 358999998875432 23457899997655444333 22211
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
+. |+. .+.| +++ ..+++..++++||| ||+.++
T Consensus 89 ~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 10 100 0112 222 34555668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHH
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f 286 (706)
..+.+.+. ++.||++++|++ .++.+ |+ +.+| .++++++...+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99999876 589999999996 34443 32 6667 56666665444
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.52 E-value=1.3e-14 Score=144.80 Aligned_cols=154 Identities=20% Similarity=0.162 Sum_probs=100.3
Q ss_pred cceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 70 NVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 70 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+. .|+..++.+ +..+-
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v---------------~~i~~~~~~----~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKV---------------AYVDTEGGF----SPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEE---------------EEEESSCCC----CHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcE---------------EEEECCCCC----CHHHH
Confidence 4567776 4799999999999999999999999998 221 222 333333211 22111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSGL 225 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe--rqRv~Ia~aL~~~-p~llllDEPTsgL 225 (706)
....... .... +++++.+. + ...|+++ ++++..+++++.+ |+++++||||+.+
T Consensus 63 ~~~~~~~----~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 63 VQMAETR----GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHTT----TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHhc----CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 1111111 1111 11222221 1 1244553 6788888999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHh-CCCEEEEEeCCCch------------HHHhhCCeEEEEeCC
Q 005252 226 DSAA--------AFFVTQTLRCLSR-DGRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (706)
Q Consensus 226 D~~~--------~~~i~~~L~~l~~-~g~tvI~~~H~p~~------------~i~~~~D~vilL~~G 271 (706)
|... ...+++.|+++++ .|.|||+++|.... .+...+|.+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 3556677888876 48999999998541 467889999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=1.2e-17 Score=164.01 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=111.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 161 (706)
|++++|+||||||||||+++|++ + .+|++.++|.+.... ...++++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLL--- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHh---
Confidence 68999999999999999999997 2 268899998653221 2345667765444556788887765332100
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 005252 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~---~~~~~L--SGGerqRv~Ia~------aL~~~p~llllDEPTsgLD~~~~ 230 (706)
-+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 72 ---------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 72 ---------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0100011111000 011234 888888888888 8999998888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CchHHHhhCCeEEEEeCCeEEEEcCchhH
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~-p~~~i~~~~D~vilL~~G~iv~~G~~~~~ 282 (706)
.. .+.++.+.+.+.++|.++|+ + +++.+.+|+|+ ++|+++..|+++-.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888876667899999998 6 46789999999 99999999987643
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.47 E-value=2.1e-16 Score=154.95 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=94.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC---cCcCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 154 (706)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 33 799999986531 11123567777543 35688898876543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005252 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (706)
Q Consensus 155 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~ 234 (706)
........ ..++.++...++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 00011111111111110 0 1122459999999999999999999876 6888777777
Q ss_pred HHHHHHHhCCCEEEEEeC
Q 005252 235 QTLRCLSRDGRTVIASIH 252 (706)
Q Consensus 235 ~~L~~l~~~g~tvI~~~H 252 (706)
+.++.+...+..+|.++|
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 777665432333444443
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.9e-15 Score=166.44 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=116.7
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCc
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (706)
|+.++ ++.| +..+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.- ........+.
T Consensus 17 l~~~~-~~~y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGF-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEE
T ss_pred EEEee-EEEE-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEee
Confidence 44445 5555 2345 9999999999999 99999999999999999999842 222111 0011111246
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhccCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCC
Q 005252 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLRG 194 (706)
Q Consensus 130 ~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~d~~----vg--~~~~~~ 194 (706)
++|++|++.+++.+||.||+.|+.... .....+ ..+...++.+... ++.. ..|+. +. .....+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999998888899999987653210 000001 1234455566654 5432 22332 11 001235
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~~H~ 253 (706)
|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77666 7899999999999999999999999999999999986 87789999988764
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.45 E-value=2.3e-17 Score=179.38 Aligned_cols=168 Identities=15% Similarity=0.032 Sum_probs=102.0
Q ss_pred cceeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEecCcCcCcEEEEecCCCCCCCC
Q 005252 70 NVLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTL 143 (706)
Q Consensus 70 ~iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~----G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~l 143 (706)
.+.+.|++.+++ |+.++|+||||||||||+++|+|++.+. + |+|.++++.. ..+..+...
T Consensus 156 ~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~ 221 (365)
T 1lw7_A 156 QYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYS 221 (365)
T ss_dssp GGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTT
T ss_pred hChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChh
Confidence 356789999999 9999999999999999999999999874 6 6666532100 000011111
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChHHHHHHHHHHHHh-hCCCEEEEeC
Q 005252 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE 220 (706)
Q Consensus 144 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~-~~p~llllDE 220 (706)
.. +++.+...- .......+.+.+ +..+..++ ....+|+|++||..+++++. .+|+++||||
T Consensus 222 ~~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 22 334332110 000000000000 00011111 12246777788888888775 5999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 221 ---PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 221 ---PT------sgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
|+ .++|...+..+.+.|+++.+ .|.+||+++|. . +..+++|++..++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998865 48899999975 3 4556666665553
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.44 E-value=1.4e-14 Score=157.22 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=99.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-Cc--CcCcEEEEe-cCCCCCCCCCHHH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVRE 147 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~E 147 (706)
++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|... .. ..+.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999885 89999998531 11 235678888 55431
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
..+.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456667777554567899999954 678889998887663
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.43 E-value=1.9e-14 Score=156.87 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=96.0
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-cCcEEEEecCCCCCCCCCHHHH
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
.+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+.... .+.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 3566666 7899999999999999999999999988762 169997776554321 24467777741
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
+|++ +..+ +.+|+++|..+|+++++|||+ |..
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 2221 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+... .++. +..|.+|+.++|+.+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6443 3433 356899999999953 678888887664
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.41 E-value=3.9e-17 Score=174.39 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=99.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEecCcC--------------------cCcEEEE-
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~~~G~~~~~~--------------------~~~~~yv- 133 (706)
++++|+|+||||||||||.|+|.. .+ ..|+|.+||.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 33 389999999864321 0124455
Q ss_pred --ecCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHH
Q 005252 134 --TQDDNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 134 --~Q~~~l~~~lTV~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
+|+..+++..+|.||..++......... +......+++.++..+++.+..+.. .++|+||+||+..++.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 5665555566777666543100000000 0000000111122223333333332 2589999999998888
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCC
Q 005252 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (706)
Q Consensus 209 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D 263 (706)
++.+|+++ ||| ..+.+.|+++. .+.||++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 888 77888888875 5899999999864 3334443
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.41 E-value=9.5e-14 Score=149.86 Aligned_cols=139 Identities=17% Similarity=0.104 Sum_probs=97.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEecC-cCcCcEEEEecCCCCCCCCCHHH
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45666664 4899999999999999999999999987 74 8999987 75432 22356899999999999989998
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
+ . + ..++.++..+.+.++++.+|+.+..|... .++| ||+||++||+++ ++.
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl---------------i~~ 331 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA---------------IAE 331 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS---------------SCH
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC---------------CCH
Confidence 4 1 1 13456666777888999999987777644 4699 999999999864 344
Q ss_pred HHHHHHHHHHHHHHh
Q 005252 228 AAAFFVTQTLRCLSR 242 (706)
Q Consensus 228 ~~~~~i~~~L~~l~~ 242 (706)
.-.....++++++.+
T Consensus 332 ~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 332 TRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455566666543
No 124
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=9.2e-16 Score=147.36 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=65.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.+.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.+.........+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467899999999999999999999999999999999998 64 8999999976421111012799998888 899999
Q ss_pred HHHH
Q 005252 148 TISY 151 (706)
Q Consensus 148 ~l~~ 151 (706)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2e-13 Score=138.31 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=89.0
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH
Q 005252 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 72 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~--~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.++++++. .+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHH
Confidence 44433 5699999999999999999999999999 44331 0014556655432 10 111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTS 223 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-v~Ia~aL~--~~p~llllDEPTs 223 (706)
+-......+. ...+ ++++.+. .....+..+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g----~~~~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYG----LSGS-------DVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTT----CCHH-------HHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcC----CCHH-------HHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111111111 1111 1121111 111245555432 33344444 4899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCchH------------------HHhhCCeEEEEeCC
Q 005252 224 GLDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSE------------------VFELFDRLYLLSGG 271 (706)
Q Consensus 224 gLD~~-------~-----~~~i~~~L~~l~~-~g~tvI~~~H~p~~~------------------i~~~~D~vilL~~G 271 (706)
.+|+. . ...+++.|+++++ .|.|||+++|..... +..++|.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99975 3 3456666777765 499999999964321 22279999999865
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.40 E-value=1.8e-15 Score=147.22 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=89.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-Cc------C-c-CcEE----EEecCCCCCCCCCHHHHH
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL------S-F-GTAA----YVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~-~~------~-~-~~~~----yv~Q~~~l~~~lTV~E~l 149 (706)
++++|+|+||||||||+++|+|.+.+.....|+|.+||.+. .. . + +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999876433379999999762 11 1 1 2355 788877655 110
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~ll-------llDEP 221 (706)
. .++....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~----~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V----SEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C----CHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C----ChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01112245566665 43 46899986 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 005252 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (706)
Q Consensus 222 Tsg---LD~~~~~~i~~~L~~l~~~g 244 (706)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455677777776665554
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.40 E-value=8.8e-16 Score=157.43 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=99.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEecCcC-cCcEEEEecCCCCCCCCCHHHHHHHHhhc-
Q 005252 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIGTLTVRETISYSARL- 155 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~~~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l- 155 (706)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+.... ...+.+++|+..+++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 987764 78888877542111 12345567887788888999999875321
Q ss_pred -----cCCCCCCHHHHHHHHHHHHH--HcCCCcccc-------ccccCcccCCCChHHHHHHHHHHHH-hhCCCEEEEe-
Q 005252 156 -----RLPDKMPWSEKRTLVERTII--EMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD- 219 (706)
Q Consensus 156 -----~~~~~~~~~~~~~~v~~~l~--~lgL~~~~d-------~~vg~~~~~~LSGGerqRv~Ia~aL-~~~p~llllD- 219 (706)
... ..+... ..++.+.. ..++--..+ ..+.+..+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 000 111111 11222211 112000000 1111223456898 66 677 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHhC
Q 005252 220 ---EPTSGLDSAAAFFVTQTLRCLSRD 243 (706)
Q Consensus 220 ---EPTsgLD~~~~~~i~~~L~~l~~~ 243 (706)
|||++||..+...+.+.|+++.++
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988765
No 128
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=1.2e-12 Score=142.54 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=67.4
Q ss_pred ccCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCC
Q 005252 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (706)
Q Consensus 191 ~~~~LSGGerqRv------~Ia~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D 263 (706)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCC
Confidence 4567999999988 567888999 999999999999999999999999998743 479999999963 678999
Q ss_pred eEEEEe
Q 005252 264 RLYLLS 269 (706)
Q Consensus 264 ~vilL~ 269 (706)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 129
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.34 E-value=4.2e-14 Score=149.00 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=88.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhh----c
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR----L 155 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----l 155 (706)
.++.+++|.|+||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46889999999999999999999998764 22 0 12345667999998876 89999988631 1
Q ss_pred c---CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCcccCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 005252 156 R---LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLD 226 (706)
Q Consensus 156 ~---~~~~~~~~~~~~~v~~~l~~lgL~--~--~~d~~vg~~~~~~LSGGerqRv~Ia--~aL~~~p~llllDEPTsgLD 226 (706)
. .|.... .+...+.++.+.-. . .....+. .+.+.+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 122222 23455566665432 0 0111122 24467999999999987 555 999999999999999
Q ss_pred HHH
Q 005252 227 SAA 229 (706)
Q Consensus 227 ~~~ 229 (706)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 854
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.33 E-value=7.4e-14 Score=155.72 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=103.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----------CcCcEEEEecCCCCC
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----------~~~~~~yv~Q~~~l~ 140 (706)
-+++|+.+++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998775 7999998765311 124589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh-hCC-CEEEE
Q 005252 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRP-RLLFL 218 (706)
Q Consensus 141 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~-~~p-~llll 218 (706)
+.+||++++.++..-... .+ +++..|+.+... .+-.--+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 888999999887431100 00 111122211110 11122357888888664 457 46666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 005252 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (706)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~ 253 (706)
.++|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 6688886543 33444543 47899999994
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=1.7e-13 Score=133.21 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=43.5
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH
Q 005252 209 ILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (706)
Q Consensus 209 L~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~ 257 (706)
.+.+|++|++|||++ ++|+.....+.+++.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 345999999999996 9999999999999999888899999999998654
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=7.7e-13 Score=125.59 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=73.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
..+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~------- 78 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT------- 78 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC-------
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH-------
Confidence 3467777 8999999999999999999999998754 24 01233333221100
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1245799999999998 6655
Q ss_pred HHHHHHHHHHHHHhCCCE-EEEEeCCCch
Q 005252 229 AAFFVTQTLRCLSRDGRT-VIASIHQPSS 256 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~g~t-vI~~~H~p~~ 256 (706)
.+..+.+.+.++.++|++ +|+++|.+..
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 588899999998887888 8999997643
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.32 E-value=1.7e-13 Score=146.68 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----------cCcEEEEecCCCCCCCCCHHHH
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... .-.+.+++|+..+.|.+||+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998875 89999999874210 1235699999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
+.++...... . .+++..|+.+..+.. ...|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876421100 0 011112222211111 11233 38888888888888885553
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 005252 229 AAFFVTQTLRCLSR-DGRTVIASIHQP 254 (706)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvI~~~H~p 254 (706)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 356666677764 589999999964
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=8.4e-14 Score=153.54 Aligned_cols=168 Identities=16% Similarity=0.097 Sum_probs=97.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (706)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 379999999999999999999999999999998742 1222221111123445544430 00111111000
Q ss_pred H--hhccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005252 152 S--ARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (706)
Q Consensus 152 ~--~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~ 227 (706)
. +.. ...+.....+ ++++.++..+++. + .....+|+|++||+.++++|+.+|.++++ +++|.
T Consensus 216 i~~a~~--~~~L~~~fl~~~era~~lL~vvDls---~-----~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 216 IEGASE--GKGLGLEFLRHIARTRVLLYVLDAA---D-----EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCGGG--SCCSCHHHHHHHTSSSEEEEEEETT---S-----CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccchhh--hhhhhHHHHHHHHHHHhhhEEeCCc---c-----CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 0 000 0011111000 1112222222332 1 23456999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhhCCeE
Q 005252 228 AAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL 265 (706)
Q Consensus 228 ~~~~~i~~~L~~l-~~~g~tvI~~~H~p~~~i~~~~D~v 265 (706)
..+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 282 ~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 282 LEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp SCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 877 445555444 4457777766644344555555544
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=9.6e-15 Score=157.12 Aligned_cols=172 Identities=18% Similarity=0.141 Sum_probs=111.9
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc------
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------ 125 (706)
++.+|+++.+ +.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.+. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 3444554444 2457999999999999999999999999999999999998775 7999999876421
Q ss_pred ---CcCcEEEEecCCCCCCCC------------CHHHHHHHHh-----------------------------hccCCCCC
Q 005252 126 ---SFGTAAYVTQDDNLIGTL------------TVRETISYSA-----------------------------RLRLPDKM 161 (706)
Q Consensus 126 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~-----------------------------~l~~~~~~ 161 (706)
.+..++|++|++.++... +++|.+.... .+..+.
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--
Confidence 124578999998776532 1333331110 000000
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHH
Q 005252 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (706)
Q Consensus 162 ~~~~~~---~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~------~p~llllDEPTsgLD~~~~~~ 232 (706)
...+.+ +.+.+....+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 112210 123579999999999999987 688887 99999999999
Q ss_pred HHHHHHHHHh
Q 005252 233 VTQTLRCLSR 242 (706)
Q Consensus 233 i~~~L~~l~~ 242 (706)
+.+.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.29 E-value=5.5e-12 Score=139.90 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEE
Q 005252 193 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL 268 (706)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999876688999999994 467889999999
Q ss_pred e
Q 005252 269 S 269 (706)
Q Consensus 269 ~ 269 (706)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2e-13 Score=144.68 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=81.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcC-----cCcEEEEecCCCCC-----CCCCH
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTV 145 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV 145 (706)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+|||+|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88775 899999 88764211 12579999998553 68899
Q ss_pred HHHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChHHHHHHHHHHH
Q 005252 146 RETI--SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (706)
Q Consensus 146 ~E~l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRv~Ia~a 208 (706)
|++ .|.. .++........+...+++++++.++|.+ ..+.+ ++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----LKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----HHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 888 4431 0111111122233457889999999985 55554 45699988999999874
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=6.7e-12 Score=134.68 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=75.5
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEecCc---CcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 005252 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (706)
+.|.||||+|||||+++|+| +..++ .|+|.++|.+... ....+++++|.+.+.-..+ + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 66664 7999999865321 1345778888764321100 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005252 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 240 (706)
.... .+++.++.+......+..+ .+|| +..+|+++++|||++ ||..++..+.+.|.+.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 2333333332211111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCch
Q 005252 241 SRDGRTVIASIHQPSS 256 (706)
Q Consensus 241 ~~~g~tvI~~~H~p~~ 256 (706)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999753
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.21 E-value=7.1e-15 Score=162.28 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=91.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC---------cCcEEEEe-----
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT----- 134 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~----- 134 (706)
+.+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.++|.+.... .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3467777 4 3899999999999999999999999998775 79999988764321 12344544
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH
Q 005252 135 ----QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (706)
Q Consensus 135 ----Q~~~l--~~~----lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv 203 (706)
|++.. ++. .|+.+++.++..-... ...........+ +.+..+|+.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88754 344 5899998876421100 000000111222 346678887542 234699999999
Q ss_pred HHHHHHhhCCCEEEE
Q 005252 204 SIALEILMRPRLLFL 218 (706)
Q Consensus 204 ~Ia~aL~~~p~llll 218 (706)
||++|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.21 E-value=5.3e-14 Score=140.51 Aligned_cols=164 Identities=23% Similarity=0.192 Sum_probs=91.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 158 (706)
.++|++++|+||||||||||+++|+|++.+. | ..+++|++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998652 2 124566665544432 222222100000111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005252 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (706)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia-~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 237 (706)
..... ....+.+..+...+..+..+.+ ...++|+||+||++++ +.++.++.++++|||..
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 1222333333222223333443 2335799999999987 77778887777888741
Q ss_pred HHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCeEEEEcCchhHHHHH
Q 005252 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (706)
Q Consensus 238 ~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~iv~~G~~~~~~~~f 286 (706)
.++...--.+|++.+.....+.+...|. +..|. +.+++...+
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1112222367777777543355566662 34454 455555443
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.21 E-value=3e-14 Score=161.21 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=108.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cCc-CcCcEEEEecCCCCCCCCCHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-~~~-~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|.++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999875 8999999864 222 123466666654422334555
Q ss_pred HHHHHHhhccCC-----CCCCHHHHHH------------------HHHHHHHHcCCC-----c----cccccccCcccCC
Q 005252 147 ETISYSARLRLP-----DKMPWSEKRT------------------LVERTIIEMGLQ-----D----CADTVIGNWHLRG 194 (706)
Q Consensus 147 E~l~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lgL~-----~----~~d~~vg~~~~~~ 194 (706)
+.+..+.+.+ | ..+...+... .+.++++++... . ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 5544333211 1 0111111110 122333333221 1 111111 12235
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCchHHHhhC
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELF 262 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~--~~H~p~~~i~~~~ 262 (706)
+|||||||+.++. + | |+|||+.....+++.|.++..+|.|+++ ++|+. .++.+.+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999877641 2 7 9999998777777777777666788875 78884 4555544
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.19 E-value=4.9e-11 Score=130.88 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=90.6
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH
Q 005252 72 LEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (706)
Q Consensus 72 L~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~--~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 146 (706)
|+.+ .+-+++|++++|+||||||||||++.| ++..++.. ...+.|+++++. .+ ...
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~~ 227 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RPV 227 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CHH
Confidence 4443 367999999999999999999999954 46554320 012355555432 10 111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 005252 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPTS 223 (706)
Q Consensus 147 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSG-GerqRv~Ia~aL~--~~p~llllDEPTs 223 (706)
.-.....++. +.. +++++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++||||+
T Consensus 228 rl~~~a~~~g----l~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 228 RLVSIAQRFG----LDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHcC----CCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1101111111 111 0111111 111 11222 2234444444443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHh-CCCEEEEEeCCCc------------------hHHHhhCCeEEEEeCCe
Q 005252 224 GLDSAAA------------FFVTQTLRCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLSGGK 272 (706)
Q Consensus 224 gLD~~~~------------~~i~~~L~~l~~-~g~tvI~~~H~p~------------------~~i~~~~D~vilL~~G~ 272 (706)
.+|.... ..+++.|+++++ .|.|||+++|... ..+...+|.++.|++|+
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 9997543 678888999876 4999999999821 22456789999998653
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=4.2e-13 Score=146.69 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=118.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCceeEEEECCEecC------cCcCc---EEEEecCCCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLA---------SNAFLSGTILLNGHKTK------LSFGT---AAYVTQDDNL 139 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~---------~~~~~~G~I~~~G~~~~------~~~~~---~~yv~Q~~~l 139 (706)
.+++|..++|+|+||||||||+|+|+|... .-.+.+|.|.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 00134899999884311 01112 3477788888
Q ss_pred CCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCC--CE
Q 005252 140 IGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP--RL 215 (706)
Q Consensus 140 ~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p--~l 215 (706)
....+..|++ .|...++. ++.++..+...+ |. .+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8777776655 34333221 011111111111 12 223356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCchHHHhhCCeEE-EEeCC-eEEEEcCchh
Q 005252 216 LFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (706)
Q Consensus 216 lllDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~~H~p~~~i~~~~D~vi-lL~~G-~iv~~G~~~~ 281 (706)
+++|||+.++|.......++.++++ ++.|.|++ +|.. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 76777764 9984 67899999999 99999 9988877644
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=6.3e-12 Score=133.00 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=65.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcC-----cCcEEEEecCCC------------
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN------------ 138 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~-----~~~~~yv~Q~~~------------ 138 (706)
+.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4579999999999999999999999999885 899999 88764211 135799999974
Q ss_pred ----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 005252 139 ----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (706)
Q Consensus 139 ----l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~ 186 (706)
+++.+|+ ||+.|.. +. . ..+...++.++++.+||. +..+.+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5888999 9888752 11 1 122345788999999995 555553
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.04 E-value=1e-12 Score=140.95 Aligned_cols=167 Identities=20% Similarity=0.165 Sum_probs=104.8
Q ss_pred ccccceeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----cCcCcEEEE
Q 005252 67 ETHNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK-----LSFGTAAYV 133 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~-----~~~~~~~yv 133 (706)
+.+.+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|++..++.+.. ...+.+.|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456899999999887 899999999999999999999987321 123666666554321 123568999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC
Q 005252 134 TQDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (706)
Q Consensus 134 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~ 212 (706)
.|.+.+.+ ++.|++..........- .......+.++..+..++|.. +++.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 99887765 78888865433211000 001112233444555555543 44433 46999999998654
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCchHHHhhCC
Q 005252 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFD 263 (706)
Q Consensus 213 p~llllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~~i~~~~D 263 (706)
.+||+.+..++.+.|++.++ .| +.|++ +.+..+++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~ 210 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAK 210 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHH
Confidence 78888889999999998875 34 24663 33444444
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=3.5e-11 Score=127.45 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=66.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecCcC---cC-cEEEEecCCCCCC----CCCHH
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FG-TAAYVTQDDNLIG----TLTVR 146 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~---~~-~~~yv~Q~~~l~~----~lTV~ 146 (706)
++.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..... .+ ..+|++|.+.+.. .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 35689999999999999999999999998775 899998 77653211 11 1689999987765 6899
Q ss_pred HHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHH
Q 005252 147 ETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (706)
Q Consensus 147 E~l~--~~~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR 202 (706)
|++. |.. .++........+....++++++.++|.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1121211112223356889999999976433221 2467777763
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.97 E-value=1.6e-13 Score=136.20 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=42.1
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEe
Q 005252 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (706)
Q Consensus 205 Ia~-aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~ 269 (706)
+++ +++.+|++++|||+|+++|..+...+.+.|.++.++ +...|.+ ..+|+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 345 667788888888999999999999999998887653 2334522 5699988875
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.95 E-value=1.9e-09 Score=108.91 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEeCCCchH-------HHhhCCeEEEEeC
Q 005252 203 VSIALEIL--MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (706)
Q Consensus 203 v~Ia~aL~--~~p~llllDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvI~~~H~p~~~-------i~~~~D~vilL~~ 270 (706)
...++.++ .+|+++++|+|++.+ |.....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 589999999999988 6555566666666665 5789999999986431 4578899999963
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=3.3e-13 Score=140.96 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=92.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCC-CCCC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIG 141 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~-~l~~ 141 (706)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|+. ...+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999999999999999998754 7899998654211 12456677663 3445
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005252 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (706)
Q Consensus 142 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP 221 (706)
.+++.|++......+ .. .... .+.+..++ ....|||||+||+.|++++..+|++| ||+
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 556666554321111 00 0000 11222233 33469999999999999999999985 888
Q ss_pred CC------------CCCHHHHHHHHHH
Q 005252 222 TS------------GLDSAAAFFVTQT 236 (706)
Q Consensus 222 Ts------------gLD~~~~~~i~~~ 236 (706)
+. -.|...+..+++.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 64 2355555555554
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.89 E-value=5.8e-10 Score=118.15 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=79.2
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005252 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (706)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 154 (706)
+++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.+.. + . ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHHH-------
Confidence 45556789999999999999999999999998653 567777654321 0 0 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005252 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (706)
Q Consensus 155 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv---~Ia~aL~~~p~llllDEPTsgLD~~~~~ 231 (706)
....+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223444556532 124689999999 89999999999999999974 34455
Q ss_pred HHHHHHHHHH
Q 005252 232 FVTQTLRCLS 241 (706)
Q Consensus 232 ~i~~~L~~l~ 241 (706)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.88 E-value=2.4e-09 Score=119.60 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=111.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-..|+++.+-+++|+++.|.|++|+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45688898889999999999999999999999998765321 22 123333322 122221
Q ss_pred HHH--Hh-------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEE
Q 005252 149 ISY--SA-------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (706)
Q Consensus 149 l~~--~~-------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~--~~p~lll 217 (706)
..- +. +++. ..++.++ ..++.+.+..++..+.. +-+ ..++|.+|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 00 0111 1233332 23455556555433221 111 2368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEeC---------C--Cc-------hHHHhhCCeEEEEeC
Q 005252 218 LDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (706)
Q Consensus 218 lDEPTsgLD~--------~~~~~i~~~L~~l~~-~g~tvI~~~H---------~--p~-------~~i~~~~D~vilL~~ 270 (706)
+|+++...+. .....+.+.|+.+++ .|.+||+++| + |. ..+...+|.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999997742 344677888888886 4899999999 2 42 146778999999986
Q ss_pred CeE
Q 005252 271 GKT 273 (706)
Q Consensus 271 G~i 273 (706)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.83 E-value=1.1e-10 Score=131.39 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=98.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHH
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 151 (706)
.+++++.++..++|.|++||||||+|+.|.. +.... .|++.+.+.+.+.. ....| .+-+++.. +|.++...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-el~~~-~~lPhl~~--~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-ELSVY-EGIPHLLT--EVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-GGGGG-TTCTTBSS--SCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-hhhhh-ccCCcccc--eeecCHHH
Confidence 4778888999999999999999999999875 23322 36666555443210 00000 00111111 12222222
Q ss_pred Hhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCcccCCCChHHHHHH----------HHHHHHhhCCC-EEE
Q 005252 152 SAR-LRLPDKMPWSEKRTLVERTIIEMGLQDCADT--VIGNWHLRGISGGERRRV----------SIALEILMRPR-LLF 217 (706)
Q Consensus 152 ~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~--~vg~~~~~~LSGGerqRv----------~Ia~aL~~~p~-lll 217 (706)
+.. ++ ...++.++|. +.+...|+.+..+- .+. ..+||||+||. .+++++...|. +++
T Consensus 232 a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 232 AANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 111 11 0134455553 67888888764321 111 24788887752 35556677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEeCCCc
Q 005252 218 LDEPTSGLDSAAAFFVTQTLRCLSRD----GRTVIASIHQPS 255 (706)
Q Consensus 218 lDEPTsgLD~~~~~~i~~~L~~l~~~----g~tvI~~~H~p~ 255 (706)
+||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 34566666666542 789999999997
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.82 E-value=6.2e-09 Score=109.69 Aligned_cols=118 Identities=19% Similarity=0.084 Sum_probs=82.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHH
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 152 (706)
+++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 99999999999999999999999998653 57887766542110 000 100
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 005252 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (706)
Q Consensus 153 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP-TsgLD~~~~~ 231 (706)
..+.+..++..... + .+-.-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01223345543211 0 01244566789999988899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 005252 232 FVTQTLRCL 240 (706)
Q Consensus 232 ~i~~~L~~l 240 (706)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 887776665
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.79 E-value=1e-10 Score=135.26 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=100.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCC--------
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-------- 138 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~-------- 138 (706)
+...+++++++.+.+|+.++|+||||+|||||+++|++...+. .-|.+.+++.+.......+++++|...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 4567899999999999999999999999999999999998764 248899888765444456888887531
Q ss_pred --------------CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHH
Q 005252 139 --------------LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (706)
Q Consensus 139 --------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~ 204 (706)
.+..+++.+|+.....-..+...-.. ......+ .+|.-+.... ...++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~---L~G~~~~~~~-----~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGA---LLGDVRHDPF-----QSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHH---HHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHh---cCceEEechh-----hcCCcccccccccc
Confidence 11111111111100000000000000 0000011 1121110001 12469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005252 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (706)
Q Consensus 205 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 239 (706)
.++....++.+||+||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 898888888777754
No 155
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.79 E-value=2.4e-10 Score=121.19 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=75.3
Q ss_pred EEEEeEEEEEEccCCccccceeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCC
Q 005252 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (706)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~ 110 (706)
|+++||++.| .++++++++.+ ++|++++|+||||||||||+++|+|++. |.
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 6778887665 35889999988 8999999999999999999999999876 64
Q ss_pred CceeEEEE---CCEecCc-CcCcEEEEecCCCCCCCCCHHHHHHHHhhcc
Q 005252 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (706)
Q Consensus 111 ~~~G~I~~---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~ 156 (706)
+|+|.+ ||..... ..+.++++ |+..+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346778 8777788899999998876553
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.79 E-value=1.7e-09 Score=120.93 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 123 (706)
..+|+|+|+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4589999999999 999999999999999999999999886 89999999764
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=6.2e-09 Score=109.75 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=88.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 159 (706)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987642 34 24666776652 2355665544221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005252 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (706)
Q Consensus 160 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 239 (706)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 0122 23344555 45999999999 999998766555444433
Q ss_pred HH---hCCCEEEE-EeCCCchHHHhhCCeEEEEeCCeEEEE
Q 005252 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (706)
Q Consensus 240 l~---~~g~tvI~-~~H~p~~~i~~~~D~vilL~~G~iv~~ 276 (706)
+. ..+.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 37774 567777887766677777764
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.76 E-value=6.5e-09 Score=112.13 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=91.1
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-|+.+- +-+++|+++.|.||+|||||||+..++...... . ..+.|+.-+..+ . +.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~----~--~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHAL----D--PE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCC----C--HH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCc----C--HH
Confidence 344443 368999999999999999999988777543211 1 224455544321 1 00
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCC-
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL- 225 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~--p~llllDEPTsgL- 225 (706)
++. .+|+.. .+-.+-+ ..+. .+-+.++++++.+ |+++++||+++.+
T Consensus 105 --~a~----------------------~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YAK----------------------KLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HHH----------------------HTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HHH----------------------HcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 111 122210 0001111 1233 2346678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HhCCCEEEEEeCCCch---------------HHHhhCCeEEEEeCCeEE
Q 005252 226 ---------DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 226 ---------D~---~~~~~i~~~L~~l----~~~g~tvI~~~H~p~~---------------~i~~~~D~vilL~~G~iv 274 (706)
|+ ..+..+.+.++++ .+.|.|||+++|.... .+..++|.++.++.++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2233445555555 3458999999996421 245789999999887766
Q ss_pred EEcC
Q 005252 275 YFGE 278 (706)
Q Consensus 275 ~~G~ 278 (706)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5554
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.71 E-value=7.7e-12 Score=130.33 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCCC-CCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~-l~~~ 142 (706)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46889999999999 99999999999999999999764 5889998865211 1123566777642 4566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCE
Q 005252 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~l 215 (706)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777774332211100 001122223333332 24899999999999999999876
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.67 E-value=1.1e-11 Score=127.17 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=80.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCc-----CcCcEEEEecCC-CCCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDD-NLIGT 142 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~-~l~~~ 142 (706)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46899999999999 99999999999999999999764 5889998864211 112355667763 24556
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCE
Q 005252 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~l 215 (706)
+++.|++......+.. .....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 6777777432211110 0001122223333332 24789999999999999999876
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=3.6e-09 Score=103.51 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005252 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (706)
Q Consensus 201 qRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 240 (706)
+.+.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.66 E-value=1.3e-09 Score=107.41 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=44.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecC-----cCcCcEEEEecCCCCCCCCCHHHHH
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.++|.... .....++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999863 2455554321 1124578999987655555544443
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.50 E-value=4.1e-09 Score=106.81 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=42.0
Q ss_pred eeEEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005252 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (706)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 123 (706)
...|+++|++..+. . ++++++ ++++|+|||||||||||++|+|.+.|. +|+|.++|.+.
T Consensus 7 ~~~l~l~~~~~~~~------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 7 FRSLTLINWNGFFA------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEEETTEEE------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eeEEEEEeeecccC------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 45688888765431 1 455666 899999999999999999999999886 89999999754
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.48 E-value=9.5e-08 Score=103.59 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=89.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHH---HHHHHH
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR---ETISYS 152 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~~--------~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~---E~l~~~ 152 (706)
.++|+|++|||||||+|.|+|..... ...+|.|.++|.+.... ...|++.|.+. ..|. .++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-ECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-eCCCchhcCCH----HHHHHHHHHHHHH
Confidence 49999999999999999999976411 13579999998653211 23455544321 1121 112111
Q ss_pred h--hc--c-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHH----HHH-hhCCCEEEEe
Q 005252 153 A--RL--R-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLD 219 (706)
Q Consensus 153 ~--~l--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia----~aL-~~~p~llllD 219 (706)
. .+ . .....+. .+..+.+.++++.+++.+..--.|++ ...-+|+|+++|+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 0 00 0 0111111 22334567788888876544223343 3345788889988887 454 334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 005252 220 EPTSGLDSAAAFFVTQTLRCLSR 242 (706)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~ 242 (706)
+|+|++|......+.+.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987654
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.42 E-value=4.8e-08 Score=98.57 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=22.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLA 107 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~~ 107 (706)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999 9864
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.41 E-value=2.6e-07 Score=103.43 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCCc
Q 005252 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQPS 255 (706)
Q Consensus 197 GGerqRv~Ia~aL~~~p~llllDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvI~~~H~p~ 255 (706)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- ..+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888899999999999999999 44677777777777777663 24789999999973
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.40 E-value=7.2e-08 Score=103.99 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=30.7
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
-|+.+- +-+++|+++.|.||+|||||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355543 3689999999999999999999999997654
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.37 E-value=1.2e-07 Score=92.93 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005252 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (706)
Q Consensus 203 v~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~ 241 (706)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887653
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.30 E-value=2e-08 Score=99.22 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=32.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 123 (706)
....++|++++|+||||||||||+++|++.+ |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3556789999999999999999999999864 7788888653
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.30 E-value=6.4e-07 Score=106.27 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=58.5
Q ss_pred cCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCchHHHhhCCeE
Q 005252 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRL 265 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~-~H~p~~~i~~~~D~v 265 (706)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|+++ ||++ ..+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 33579999999999999999999999999996 999887777777776655456778876 8875 5677788753
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.23 E-value=5.1e-07 Score=96.67 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=83.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-.-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 3457777777999999999999999999999888754321 11 22344332 2233222
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
..+.......+.+.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 90 ------------------~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 ------------------ALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp ------------------HHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred ------------------HHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 222222222222222111 14999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEe
Q 005252 229 AAFFVTQTLRCLSR-D-GRTVIASI 251 (706)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvI~~~ 251 (706)
...+...++++.+ . |..+|++=
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3366667777765 4 67777764
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.21 E-value=9.9e-08 Score=98.10 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.6
Q ss_pred EEEEEeE-EEEEEccCCccccceeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 51 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.|+++|+ ++++. +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 98872 346799999999999 99999999999999999999998653
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.13 E-value=3.1e-06 Score=91.23 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCC
Q 005252 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP 254 (706)
Q Consensus 193 ~~LSGGerqRv~Ia~aL~~~p~llllD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~--H~p 254 (706)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+.+... +.++|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998876 55555777889999 99999999998888887776643 67888888 774
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.08 E-value=1.5e-07 Score=92.84 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=42.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I--~~~G~~~ 123 (706)
.....+..+...++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777777899999999999999999999999998752 5766 8887643
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.06 E-value=2.7e-06 Score=82.00 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=34.3
Q ss_pred cce--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356 7899999999 9999999999999999999987765
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.02 E-value=8e-07 Score=94.59 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=42.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005252 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (706)
Q Consensus 72 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 122 (706)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 47899999999999999999999999999999988764 6889887765
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.01 E-value=2.8e-08 Score=111.87 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=80.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCC-CCCC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~-l~~~ 142 (706)
..+++++++.+++| +.|.||||+|||||+++|++... .|.|.++|.+.... .+.+..++|+.. ..+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45789999999999 99999999999999999999763 57888888653211 112345566542 3344
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 005252 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (706)
Q Consensus 143 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEP 221 (706)
+.+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 4455555321111100 00112333334444442 3678888888888888888887 7776
Q ss_pred C
Q 005252 222 T 222 (706)
Q Consensus 222 T 222 (706)
.
T Consensus 186 L 186 (499)
T 2dhr_A 186 L 186 (499)
T ss_dssp T
T ss_pred c
Confidence 5
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.01 E-value=1.2e-06 Score=85.42 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998864
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=2.3e-06 Score=84.15 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+...+++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999999765
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.98 E-value=1.8e-05 Score=85.08 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvI~~~H~p 254 (706)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 578999999996
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.94 E-value=4.7e-06 Score=81.68 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=27.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
++.+|++++|+||||||||||+++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999855
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.94 E-value=6.1e-07 Score=92.03 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=44.1
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEecCc------CcCcEEEE
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKL------SFGTAAYV 133 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~I~--------~~G~~~~~------~~~~~~yv 133 (706)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 877664 89998 78865421 12356778
Q ss_pred ecCC
Q 005252 134 TQDD 137 (706)
Q Consensus 134 ~Q~~ 137 (706)
+|++
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7653
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=2.9e-06 Score=94.22 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=51.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEE-EeCCeEEEEcCch
Q 005252 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 280 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vil-L~~G~iv~~G~~~ 280 (706)
.+|++||+||+..-.+. .++..+...+..+.+.|+.+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 6778888999888888999999999975443233334333 4567777666664
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=6.6e-05 Score=78.03 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEeCCCc---hHH
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQPS---SEV 258 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvI~~~H~p~---~~i 258 (706)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233444433321 2356778888753 334
Q ss_pred HhhCCeEEEE
Q 005252 259 FELFDRLYLL 268 (706)
Q Consensus 259 ~~~~D~vilL 268 (706)
...||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567665544
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.91 E-value=3.6e-06 Score=81.48 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=30.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 118 (706)
.+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 368999999999999999999999987532 3565544
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=2.4e-05 Score=84.26 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 005252 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (706)
Q Consensus 195 LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~~H 252 (706)
.++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445433 44566667665555 46666654
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.87 E-value=5.8e-06 Score=81.42 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchH-HHhhCCeEEEEe
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~-i~~~~D~vilL~ 269 (706)
+.|+.+|..++..+..+|..+..+ ++.+++.....+.+.+... .+.++|+.+|...+. ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888999988888877643322 2344555444444443322 356888888875321 256789888874
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.86 E-value=6.1e-05 Score=80.72 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=78.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhc
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l 155 (706)
+-+++|+++.|.||+|+|||||+..++... .+. . .| |. ...+.|+.-+..+ ...+-.....++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~-~g-----g~-----~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-A-GG-----YP-----GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-T-TT-----BC-----CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-c-cC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 568999999999999999999999888642 111 0 00 10 1235566544321 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 005252 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTSGLDSA-- 228 (706)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRv~Ia~aL~----~~p~llllDEPTsgLD~~-- 228 (706)
. ... +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1223222110 1123333 34555666666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 005252 229 ----------AAFFVTQTLRCLSR-DGRTVIASIHQP 254 (706)
Q Consensus 229 ----------~~~~i~~~L~~l~~-~g~tvI~~~H~p 254 (706)
...+++..|+++++ .|.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 13455666667765 488988888753
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.83 E-value=1.6e-05 Score=84.34 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=83.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-.-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 3457778777999999999999999999998887743211 11 124444422 343332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~ 228 (706)
.. +.......+.+.+..+ | . ..||++|++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 21 1111111111111111 0 0 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeC
Q 005252 229 AAFFVTQTLRCLSRD-GRT--VIASIH 252 (706)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vI~~~H 252 (706)
...+...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566667777653 666 777755
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.82 E-value=7.2e-05 Score=79.44 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=79.8
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHH
Q 005252 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (706)
Q Consensus 72 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 149 (706)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44432 578999999999999999999998887642 221 011 10 1234565544321 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChH-HHHHHHHHHHHh---hCCCEEEEeCCCCCC
Q 005252 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGL 225 (706)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG-erqRv~Ia~aL~---~~p~llllDEPTsgL 225 (706)
....++. .+. +++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 2222221 111 1122211 111 112333 345677778887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHh-CCCEEEEEeCC
Q 005252 226 DS--------AA----AFFVTQTLRCLSR-DGRTVIASIHQ 253 (706)
Q Consensus 226 D~--------~~----~~~i~~~L~~l~~-~g~tvI~~~H~ 253 (706)
+. .. ..++++.|+++++ .|.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 2455566666665 48899988775
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.81 E-value=4.8e-06 Score=83.95 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 122 (706)
..++|++++|.|+||||||||+++|+|. .|+|.+++++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 4478999999999999999999999986 3778888765
No 192
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.72 E-value=3.7e-05 Score=80.91 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHHHHHHhhccCCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 160 (706)
++..++|+|++|+|||||+|.|.|.... + ..+.+.....+..+++.+++..+ ++. -.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i---~~i---------DTpG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQA---IYV---------DTPGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEE---EEE---------SSSSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeE---EEE---------ECcCC
Confidence 3448999999999999999999986321 0 11111111223456776654211 000 01111
Q ss_pred CCHHHHHHHHHHHHHH---cCCCccccccc--cCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHH
Q 005252 161 MPWSEKRTLVERTIIE---MGLQDCADTVI--GNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFF 232 (706)
Q Consensus 161 ~~~~~~~~~v~~~l~~---lgL~~~~d~~v--g~~~~~~LSGGerqRv~Ia~aL~--~~p~llllDEPTsgLD~~~-~~~ 232 (706)
..+ ......+.+.. -.+.. .|-.+ -+ ... +|+|++ .+++.+. ..|.++++ +.+|... ...
T Consensus 67 -~~~-~~~~l~~~~~~~~~~~l~~-~D~vl~Vvd-~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 67 -HME-EKRAINRLMNKAASSSIGD-VELVIFVVE-GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp -CHH-HHHHHHHHHTCCTTSCCCC-EEEEEEEEE-TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred -Ccc-chhhHHHHHHHHHHHHHhc-CCEEEEEEe-CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 000 00111111110 01111 12111 11 112 898886 4566666 68999998 7899876 667
Q ss_pred HHHHHHHHHhC-CC--EEEEEeCCCchHHHhhCCeEE
Q 005252 233 VTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 266 (706)
Q Consensus 233 i~~~L~~l~~~-g~--tvI~~~H~p~~~i~~~~D~vi 266 (706)
+.+.++++++. |. .+.++.|+- ..+.+++|.+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 77888888763 43 555666663 44556666544
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=1.6e-05 Score=78.72 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999998765
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.65 E-value=1.1e-05 Score=94.13 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=71.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcC-----cCcEEEEecCCCCCCCCCHHHHHH
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETIS 150 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~E~l~ 150 (706)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+.+..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~---- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR---- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE----
Confidence 3457889999999999999999999999765431 135766 455432110 1123333332221111 000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005252 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (706)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llllDEPTsgLD~~~~ 230 (706)
+ ...||. |. ...+ .......-..+..++++| |+.|+|..+.
T Consensus 76 --------------------------~---nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 76 --------------------------V---FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp --------------------------E---EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred --------------------------E---EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 0 112221 10 0111 112222235678899999 9999998776
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
+.++.+.+.+.++|++.|..
T Consensus 117 ----~~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 117 ----RAWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp ----HHHHHHHHTTCCEEEEEECG
T ss_pred ----HHHHHHHHccCCEEEEecCC
Confidence 33344445688889999884
No 195
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.64 E-value=2.6e-05 Score=76.82 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999865
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.62 E-value=8e-06 Score=88.75 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 118 (706)
..+|+++|+.+++|++++|.||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 576655
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=1.5e-05 Score=78.70 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998764
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=9.5e-06 Score=79.97 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=33.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5789999999999999999999999987653 567766544
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.59 E-value=1.8e-05 Score=75.62 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
.+|++++|+|+||||||||++.|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999863 56667654
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.55 E-value=7.3e-06 Score=87.11 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.3
Q ss_pred cccceeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
.+..|++++..+..++ +++|+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887776 9999999999999999999998763
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00014 Score=80.13 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
++.+++++|++||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999988754
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.49 E-value=1.9e-05 Score=89.82 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~I~-~~G~~ 122 (706)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. +||.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47899999999999999999999999998774 54 674 77754
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00013 Score=76.47 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999865
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.46 E-value=2.5e-05 Score=83.47 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=4.1e-05 Score=72.81 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.46 E-value=2.7e-05 Score=78.55 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCe
Q 005252 196 SGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (706)
Q Consensus 196 SGGerqRv~Ia~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~ 264 (706)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++..-+.....+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655543 33578999999999976 68877665555555444333456666655555555555543
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.42 E-value=7.6e-05 Score=70.21 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (706)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556666665 99999999999999999987
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.39 E-value=0.00069 Score=75.04 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=96.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+-
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 34577777779999999999999999999998887543211 11 123333322 233222
Q ss_pred HHH--HhhccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEE
Q 005252 149 ISY--SARLRLP------DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFL 218 (706)
Q Consensus 149 l~~--~~~l~~~------~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~--~~p~llll 218 (706)
..- +.....+ ..++.++. .++.+.+..+.-.. -.+-+ ..++|..|. .+.++.+. .+++++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAP---IYIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSC---EEEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCC---EEEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 1111110 11223332 33333443332111 11111 124677665 34555565 47999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEeCC-----------Cc-------hHHHhhCCeEEEEe
Q 005252 219 DEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQ-----------PS-------SEVFELFDRLYLLS 269 (706)
Q Consensus 219 DEPTsgLD~----------~~~~~i~~~L~~l~~-~g~tvI~~~H~-----------p~-------~~i~~~~D~vilL~ 269 (706)
|..+.-.+. .....+.+.|+.+++ .|.+||+++|- |. ..+.+.+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 123467778888876 48999999883 21 02456788888885
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=0.00071 Score=68.71 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998653
No 210
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.27 E-value=0.0001 Score=81.28 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=28.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~ 109 (706)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446789999999999999999999999987653
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=0.0002 Score=85.29 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=27.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.+++|+.++|.||||||||||+++|+|.+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999864
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.25 E-value=0.0003 Score=68.62 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.16 E-value=9e-05 Score=71.15 Aligned_cols=38 Identities=37% Similarity=0.463 Sum_probs=29.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~ 121 (706)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999987643 24 5555553
No 214
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.16 E-value=0.00058 Score=71.96 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=36.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 210 ~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
..++++||+||+.. ..|......+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234477888888988887778888888876543
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.14 E-value=3.4e-05 Score=82.67 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=41.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
.+.+++++++...+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356889999999999999999999999999999999887543 45554433
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.09 E-value=4.7e-05 Score=82.27 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=43.8
Q ss_pred EEEEEeEEEEEEccCCcccccee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+.|+||+..++ ..+.+|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 366777777663 3466788 899999999999999999999999999998764
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.06 E-value=0.00018 Score=72.50 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=27.3
Q ss_pred eeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 72 LEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 72 L~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 666777766 8999999999999999999999987753
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.001 Score=68.47 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.++.-+.|.||+|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999764
No 219
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.00 E-value=0.00079 Score=64.00 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.0062 Score=65.46 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=28.4
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 35899999999999999999999877753
No 221
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.98 E-value=0.00039 Score=68.67 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (706)
.+.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4556666664 99999999999999999986
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.98 E-value=0.0011 Score=66.54 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhhCCeEEEEe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------~p~~~i~~~~D~vilL~ 269 (706)
+++++++||--. |+. .+++.++.+++.|.+||++-| .++.++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 653 355666777777999999999 66788899999999975
No 223
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.97 E-value=0.00016 Score=77.68 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=31.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEee
Confidence 467899999999999999999999976553 566665543
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.90 E-value=0.0056 Score=61.33 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvI~~~H~ 253 (706)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555555443322 13588888884
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.90 E-value=0.00014 Score=82.72 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=39.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
..+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34677788877 89999999999999999999999988653 67776655
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.00078 Score=66.71 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.3
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCCc
Q 005252 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQPS 255 (706)
Q Consensus 211 ~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vI~~~H~p~ 255 (706)
.+|.++++||.-.-- +......+.+.+......+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233377788888887766655 788877643
No 227
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00042 Score=68.72 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=28.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 118 (706)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865321123566654
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.88 E-value=0.0011 Score=73.49 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=29.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34666666689999999999999999999877764
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.88 E-value=0.00022 Score=70.50 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~ 121 (706)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999987642 56 6777653
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.87 E-value=0.0043 Score=65.35 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 71 iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5689999999999999999999988774
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.85 E-value=0.00092 Score=73.89 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=31.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLAS------N---AFLSGTILLNGHK 122 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~------~---~~~~G~I~~~G~~ 122 (706)
-.++|+|+||+|||||+|.|+|.... + ...+|.+.++|++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 37999999999999999999997531 0 1247899999975
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.0051 Score=65.95 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.79 E-value=0.00052 Score=67.37 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.79 E-value=0.0009 Score=64.61 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=20.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
..+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999988887 5689999999999999999974
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.76 E-value=0.00055 Score=66.14 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=29.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
.+++|+|+||||||||++.|.+.+......-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999875432122466666543
No 236
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.00067 Score=65.51 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 74 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999865
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.015 Score=61.39 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466778999999999999999999764
No 238
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.63 E-value=0.00041 Score=67.63 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3568899998888875 689999999999999999864
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.63 E-value=0.0015 Score=70.54 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 103 (706)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346777887775 99999999999999999986
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0014 Score=69.90 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.54 E-value=0.00096 Score=65.10 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005252 84 LTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (706)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.54 E-value=0.0081 Score=60.52 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.52 E-value=0.0032 Score=59.01 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.00072 Score=65.13 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=26.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
..+|.+++|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999987654
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.49 E-value=0.00059 Score=75.13 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=37.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005252 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (706)
Q Consensus 73 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 122 (706)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988764 5777776544
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.46 E-value=0.00028 Score=76.14 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=34.4
Q ss_pred EEEEEeEEEEEEccCCccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.+.++||+..+ +.+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 46677776554 3467889999877 9999999999999999988643
No 247
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.41 E-value=0.027 Score=63.09 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.8
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34566655699999999999999999999876663
No 248
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.38 E-value=0.0022 Score=64.52 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=45.6
Q ss_pred HhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------------------chHHHhhCCeEE
Q 005252 209 ILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------------------SSEVFELFDRLY 266 (706)
Q Consensus 209 L~~~p~llllDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvI~~~H~p---------------------~~~i~~~~D~vi 266 (706)
+..+|+++++||+-.- .+........+.+..+...|..++.++|-- .+.+++.+|.|.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4468999999997642 333222333344444556788999998811 134667788887
Q ss_pred EEeCCeEEEEcCchhHHHHHHh
Q 005252 267 LLSGGKTVYFGETSAAFEFFAQ 288 (706)
Q Consensus 267 lL~~G~iv~~G~~~~~~~~f~~ 288 (706)
+++ -+|++..+-++.
T Consensus 161 lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 161 LID-------LPPRELLERLRD 175 (228)
T ss_dssp EBC-------CCHHHHHHHHHT
T ss_pred Eec-------CCHHHHHHHHHC
Confidence 764 366666666554
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.00082 Score=68.50 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=34.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 71 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 444444 5677899999999999999999999987642 45667764
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.00044 Score=74.12 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=34.5
Q ss_pred ccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 005252 69 HNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
..+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578888888999988 99999999999999999998753
No 251
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.30 E-value=0.0016 Score=71.02 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECCE
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-----S---NAFLSGTILLNGH 121 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-----~---~~~~~G~I~~~G~ 121 (706)
-+.+..|..++|+|+||+|||||+|+|+|... | -....|.|.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 33556788899999999999999999999721 0 0123688877663
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.0017 Score=63.44 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 253
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.25 E-value=0.0021 Score=61.45 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999854
No 254
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.24 E-value=0.0031 Score=59.98 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.19 E-value=0.0026 Score=60.37 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.00056 Score=72.71 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=36.2
Q ss_pred cccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 005252 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45688889989999998 999999999999999999987643
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.18 E-value=0.0024 Score=59.99 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.13 E-value=0.00051 Score=72.13 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.4
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005252 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (706)
Q Consensus 73 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 121 (706)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 677665 9999999999999999999999987643 456665443
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.0029 Score=60.49 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0033 Score=63.10 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999999999754
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.97 E-value=0.0037 Score=59.76 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0036 Score=63.26 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998654
No 263
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.82 E-value=0.0041 Score=63.40 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999764
No 264
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.80 E-value=0.017 Score=61.12 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
+-+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999874
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.80 E-value=0.0045 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998643
No 266
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.79 E-value=0.012 Score=57.55 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhhCCeEEEEe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------~p~~~i~~~~D~vilL~ 269 (706)
+.+++++||--- +|+. .++.++++++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6533 36677888878999999998 66788999999998875
No 267
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.78 E-value=0.02 Score=52.82 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
+..+|++||.- .|+...+..+.+.|... ..+..+|++++.+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999984 68888888888877322 234677888877644
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.77 E-value=0.04 Score=59.30 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877663
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.72 E-value=0.0048 Score=60.18 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987543
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.70 E-value=0.0052 Score=57.40 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005252 84 LTALMGPSGSGKSTLLDAL 102 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~L 102 (706)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 271
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.68 E-value=0.0059 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.67 E-value=0.0056 Score=60.33 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 273
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.67 E-value=0.037 Score=59.20 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.66 E-value=0.0057 Score=58.43 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998654
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.63 E-value=0.026 Score=59.53 Aligned_cols=26 Identities=42% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHH
Q 005252 77 GYAEPGTLTALMGPSGSGKSTLL-DALS 103 (706)
Q Consensus 77 ~~i~~Ge~~aI~GpsGsGKSTLL-~~La 103 (706)
+=+++| ++.|.||+|+|||||+ .+++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHH
Confidence 457899 9999999999999995 4444
No 276
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.60 E-value=0.006 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999765
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.0068 Score=58.88 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999997654
No 278
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.59 E-value=0.068 Score=67.79 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=26.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 78 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999887643
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.59 E-value=0.0055 Score=58.43 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 280
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.57 E-value=0.0047 Score=59.34 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999987654
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.54 E-value=0.024 Score=56.35 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCchHHHhhCCeEEEEe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H---------~p~~~i~~~~D~vilL~ 269 (706)
+.+++++||--- +|.. .++.+++++..|+.||++-+ .++..+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6543 33777888778999999999 78889999999999885
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.48 E-value=0.0076 Score=56.94 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 005252 83 TLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG 104 (706)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.42 E-value=0.0075 Score=58.77 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.41 E-value=0.0038 Score=61.06 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.40 E-value=0.0078 Score=58.16 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999874
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.39 E-value=0.0075 Score=57.27 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.35 E-value=0.0077 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998643
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.35 E-value=0.0073 Score=62.82 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=28.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G 120 (706)
..|.++.|.|||||||||+.+.|+..+. .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3577999999999999999999987542 24566665
No 289
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.30 E-value=0.073 Score=53.53 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=45.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CchHHHhhCCeEEEEe
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~---------p~~~i~~~~D~vilL~ 269 (706)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877644 666666677789999999999 8889999999999885
No 290
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.28 E-value=0.023 Score=62.96 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 005252 198 GERRRVSIALEILMRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (706)
Q Consensus 198 GerqRv~Ia~aL~~~p~llllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~ 253 (706)
.|.+....+...+.+++++++.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 3666677777788888876665444 4555544 44555443 467888888776
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.26 E-value=0.0088 Score=58.33 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.24 E-value=0.0086 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 293
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.23 E-value=0.013 Score=61.65 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=31.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888877 8999999999999999999999874
No 294
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.22 E-value=0.12 Score=55.67 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.22 E-value=0.011 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 296
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.15 E-value=0.0084 Score=61.46 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 297
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.089 Score=57.91 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=43.1
Q ss_pred HHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCchHHHhhCCeEEEEeCC
Q 005252 206 ALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSR----DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (706)
Q Consensus 206 a~aL~~~p~llllDEPTs----------gLD~~~~~~i~~~L~~l~~----~g~tvI~~~H~p~~~i~~~~D~vilL~~G 271 (706)
..|-...|.|+|+||--+ +-|......+.++|..+-. .+..||.+|++|.. .|.- +++.|
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRpG 341 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRPG 341 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTSTT
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCCC
Confidence 344456899999999753 2344455566677777642 35789999998742 2332 23555
Q ss_pred eE---EEEcCchh
Q 005252 272 KT---VYFGETSA 281 (706)
Q Consensus 272 ~i---v~~G~~~~ 281 (706)
+. ++.+.|+.
T Consensus 342 RfD~~I~i~lPd~ 354 (437)
T 4b4t_L 342 RLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEECCCCCCH
T ss_pred ccceeeecCCcCH
Confidence 53 56666654
No 298
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.00 E-value=0.0095 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998643
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.011 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 300
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.00 E-value=0.034 Score=51.14 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999965 6788888888888876544456788887765
No 301
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.13 Score=55.97 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++|-.=+.+.||+|+|||+|.+++|+..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3444457899999999999999999864
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.97 E-value=0.011 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 303
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.93 E-value=0.013 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998754
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.92 E-value=0.013 Score=56.25 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.013 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 306
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.90 E-value=0.012 Score=56.96 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 307
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.87 E-value=0.026 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999877654
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.87 E-value=0.015 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+|-.++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998654
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.86 E-value=0.011 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.84 E-value=0.013 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 311
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.83 E-value=0.013 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.81 E-value=0.013 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.78 E-value=0.012 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.77 E-value=0.015 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.77 E-value=0.011 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.72 E-value=0.014 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999865
No 317
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.72 E-value=0.014 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 318
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.71 E-value=0.021 Score=61.40 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S---NAFLSGTILLNG 120 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~-----~---~~~~~G~I~~~G 120 (706)
|-.++|+|.+|+|||||+|.|+|... | -.+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 012357777765
No 319
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.71 E-value=0.014 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 320
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.70 E-value=0.015 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.70 E-value=0.014 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 322
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.67 E-value=0.0095 Score=64.47 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCch
Q 005252 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (706)
Q Consensus 212 ~p~llllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~ 256 (706)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999877774 667777888888888788999999999853
No 323
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.65 E-value=0.014 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.65 E-value=0.18 Score=63.95 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=86.4
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHH
Q 005252 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (706)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 147 (706)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++..... . | ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~------G-------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----E------G-------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----T------T-------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----h------C-------CCeEEEEccCchHH---H--
Confidence 3466654 35999999999999999999998776542211 0 1 23455554432211 1
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 005252 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (706)
Q Consensus 148 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~--~~p~llllDEPTsgL 225 (706)
.+.. +|++. .+-.+-+ + -++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~~----------------------lGvd~-~~L~i~~--~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YARK----------------------LGVDI-DNLLCSQ--P--DTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHHH----------------------TTCCG-GGCEEEC--C--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHHH----------------------cCCCH-HHeEEcC--C--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 1111 22210 0000110 1 13333 234555554 479999999998866
Q ss_pred CH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCCc---------------hHHHhhCCeEEEEeCCeE
Q 005252 226 DS-------------AAAFFVTQTLRCL---S-RDGRTVIASIHQPS---------------SEVFELFDRLYLLSGGKT 273 (706)
Q Consensus 226 D~-------------~~~~~i~~~L~~l---~-~~g~tvI~~~H~p~---------------~~i~~~~D~vilL~~G~i 273 (706)
.. .....+.+.+++| + +.|.+||++.|-.. ..+...+|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1233445555555 3 35899999988521 235578898888875544
Q ss_pred EEEc
Q 005252 274 VYFG 277 (706)
Q Consensus 274 v~~G 277 (706)
...|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 3333
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.64 E-value=0.015 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.64 E-value=0.015 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.63 E-value=0.015 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 328
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.62 E-value=0.017 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 329
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.61 E-value=0.02 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998753
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.61 E-value=0.019 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.59 E-value=0.018 Score=55.03 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.58 E-value=0.014 Score=55.59 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 333
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.58 E-value=0.024 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.57 E-value=0.015 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 335
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.53 E-value=0.017 Score=58.46 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.++|+|.+|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.53 E-value=0.016 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.52 E-value=0.015 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998763
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.51 E-value=0.02 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998543
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.50 E-value=0.02 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998654
No 340
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.49 E-value=0.016 Score=55.07 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.47 E-value=0.016 Score=57.31 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998644
No 342
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.45 E-value=0.018 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.44 E-value=0.018 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.43 E-value=0.021 Score=53.37 Aligned_cols=23 Identities=43% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.41 E-value=0.018 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.41 E-value=0.02 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.41 E-value=0.017 Score=54.70 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005252 85 TALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998753
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.41 E-value=0.02 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.39 E-value=0.021 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.39 E-value=0.019 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.38 E-value=0.032 Score=54.96 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44566665554 6889999999999999999999865
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.37 E-value=0.017 Score=55.06 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.34 E-value=0.019 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.32 E-value=0.02 Score=52.78 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005252 85 TALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~ 105 (706)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.32 E-value=0.019 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.31 E-value=0.024 Score=57.76 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998653
No 357
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.22 E-value=0.019 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.21 E-value=0.026 Score=57.00 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.21 E-value=0.33 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999997654
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.022 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.18 E-value=0.022 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998753
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.17 E-value=0.022 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 363
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.14 E-value=0.024 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
No 364
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.014 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 365
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.13 E-value=0.083 Score=67.91 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=85.0
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecCcCcCcEEEEecCCCCCCCCCHHHH
Q 005252 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (706)
Q Consensus 71 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 148 (706)
-|+.+- +=+++|+++.|.||+|+|||||+..++...... | ..+.|+.-+..+-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~----G-------------~~vlyis~E~s~~~---~~-- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----G-------------KTCAFIDAEHALDP---IY-- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----T-------------CCEEEECTTSCCCH---HH--
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc----C-------------CeEEEEEcCCCHHH---HH--
Confidence 455554 359999999999999999999987776432211 1 12344443322110 10
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 005252 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLD 226 (706)
Q Consensus 149 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~--~~p~llllDEPTsgLD 226 (706)
+.+ +|++. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++-..
T Consensus 428 ---a~~----------------------lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 428 ---ARK----------------------LGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp ---HHH----------------------TTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---HHH----------------------cCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 111 12210 0001111 12332 3456666665 4799999999887552
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCch---------------HHHhhCCeEEEEeCCeEE
Q 005252 227 -S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (706)
Q Consensus 227 -~------------~~~~~i~~~L~~l---~~-~g~tvI~~~H~p~~---------------~i~~~~D~vilL~~G~iv 274 (706)
. ..+..+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|+..+..
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~ 555 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccc
Confidence 1 1234455666666 34 58999999874211 255678888888755433
No 366
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.13 E-value=0.024 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.11 E-value=0.023 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.11 E-value=0.023 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.09 E-value=0.02 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 370
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.09 E-value=0.025 Score=59.17 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999864
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.08 E-value=0.026 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 372
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.97 E-value=0.024 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999764
No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.97 E-value=0.025 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.96 E-value=0.023 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 375
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.94 E-value=0.026 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998764
No 376
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.93 E-value=0.028 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.93 E-value=0.026 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.=.++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.93 E-value=0.035 Score=58.97 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999765
No 379
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.92 E-value=0.026 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 380
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.92 E-value=0.025 Score=57.73 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.90 E-value=0.021 Score=55.15 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 382
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.90 E-value=0.033 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.87 E-value=0.027 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 384
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.025 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.81 E-value=0.028 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.80 E-value=0.027 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.026 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.78 E-value=0.026 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 389
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.76 E-value=0.029 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.76 E-value=0.031 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 391
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.75 E-value=0.016 Score=60.38 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 392
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.73 E-value=0.027 Score=60.73 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005252 85 TALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 85 ~aI~GpsGsGKSTLL~~LaG~ 105 (706)
++|+|++|+|||||+|.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.71 E-value=0.03 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.71 E-value=0.034 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.71 E-value=0.03 Score=57.88 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 005252 82 GTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 396
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.70 E-value=0.029 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 397
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.68 E-value=0.017 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 398
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.67 E-value=0.03 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 399
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.67 E-value=0.034 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 368999999999999999999987643
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.64 E-value=0.034 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 401
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.031 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.60 E-value=0.034 Score=56.76 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 403
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.59 E-value=0.041 Score=54.62 Aligned_cols=28 Identities=46% Similarity=0.659 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
-+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 404
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.59 E-value=0.031 Score=58.14 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.59 E-value=0.029 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999764
No 406
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.57 E-value=0.033 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.57 E-value=0.033 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.53 E-value=0.033 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.53 E-value=0.033 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.52 E-value=0.032 Score=57.36 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.52 E-value=0.033 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.031 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 413
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.51 E-value=0.031 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999854
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.50 E-value=0.034 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 415
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.49 E-value=0.026 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.48 E-value=0.034 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 417
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.035 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 418
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.035 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.47 E-value=0.031 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 420
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.46 E-value=0.034 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.45 E-value=0.04 Score=56.94 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 005252 83 TLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG 104 (706)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.42 E-value=0.036 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 423
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.41 E-value=0.039 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 424
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.40 E-value=0.031 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 425
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.40 E-value=0.036 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.40 E-value=0.047 Score=57.48 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998764
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.36 E-value=0.032 Score=55.99 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 79 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.35 E-value=0.038 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
No 429
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.33 E-value=0.034 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.28 E-value=0.041 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999988654
No 431
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.27 E-value=0.031 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.26 E-value=0.048 Score=54.38 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 433
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.036 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.22 E-value=0.048 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455688999999999999999998644
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.21 E-value=0.044 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 436
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.18 E-value=0.036 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999875
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.18 E-value=0.042 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999988653
No 438
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.17 E-value=0.07 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.031 Sum_probs=27.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
+..++..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3445555544 4688999999999999999988875
No 439
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.15 E-value=0.04 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998765
No 440
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.15 E-value=0.044 Score=58.32 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998765
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.14 E-value=0.046 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.09 E-value=0.043 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.08 E-value=0.043 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.07 E-value=0.045 Score=59.90 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999754
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.05 E-value=0.037 Score=54.28 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.04 E-value=0.04 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.04 E-value=0.03 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999764
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.01 E-value=0.062 Score=53.31 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=39.8
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCch---------HHHhhCCeEEEEe
Q 005252 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS---------EVFELFDRLYLLS 269 (706)
Q Consensus 210 ~~~p~llllDEPTs----gLD~~~~~~i~~~L~~l~~-~g~tvI~~~H~p~~---------~i~~~~D~vilL~ 269 (706)
-.+|+++++|--+. .-|.....+++..|+++++ .|.++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35789999986432 1144555677777888776 58999999986422 1234688888774
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.99 E-value=0.053 Score=60.11 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=29.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 356666 456689999999999999999999998654
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.99 E-value=0.045 Score=57.90 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.93 E-value=0.041 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 452
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.90 E-value=0.043 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999754
No 453
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.87 E-value=0.046 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.86 E-value=0.055 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 455
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.84 E-value=0.057 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999765
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.82 E-value=0.039 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 457
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.78 E-value=0.056 Score=53.82 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 108 (706)
.+|.++++.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.78 E-value=0.064 Score=53.69 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 459
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.75 E-value=0.048 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 460
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.75 E-value=0.061 Score=52.27 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=30.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 211 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777666665432 23567888888754
No 461
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.70 E-value=0.028 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.058 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.049 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 464
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.60 E-value=0.064 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.46 E-value=0.057 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 005252 83 TLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 83 e~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.061 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.30 E-value=0.029 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.30 E-value=0.041 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005252 84 LTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (706)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.29 E-value=0.079 Score=55.66 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.29 E-value=0.059 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
No 471
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.22 E-value=0.074 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998643
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.13 E-value=0.19 Score=55.96 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=53.4
Q ss_pred cCCCChHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 192 LRGISGGERRRVSIAL--EILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 192 ~~~LSGGerqRv~Ia~--aL~~---------------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
..+.||||+|-.-+|+ +++. .=+++++||. +-+|.......+++++++ |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999644443 3322 1257999999 999999999999999876 6777777744
Q ss_pred chHHHhhCCeEEEEe
Q 005252 255 SSEVFELFDRLYLLS 269 (706)
Q Consensus 255 ~~~i~~~~D~vilL~ 269 (706)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3566788888774
No 473
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.12 E-value=0.022 Score=59.86 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCc
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~ 255 (706)
+++++++|| ...|+......+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776533 345666777654
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.11 E-value=0.074 Score=57.84 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 4578999999999999999998654
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.97 E-value=0.066 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999854
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.91 E-value=0.074 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.80 E-value=0.071 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.78 E-value=0.023 Score=57.70 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=22.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 76 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
......| +.|.||+|+|||||+++|++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3333444 7799999999999999999754
No 479
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.12 E-value=0.12 Score=49.95 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------chHHHhhCCeEEEEe
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------SSEVFELFDRLYLLS 269 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p---------~~~i~~~~D~vilL~ 269 (706)
+++++++||--- +|+ .+++.|++++++|..||++-++. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999753 443 36677787877899999988832 245666788887664
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.12 E-value=0.035 Score=66.03 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.1
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 75 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.++.+.+++.++|.||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678999999999999999999999998753
No 481
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.09 E-value=0.11 Score=49.89 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 005252 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (706)
Q Consensus 212 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~~H~p 254 (706)
++.++++||. ..++......+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 456777766666666553 2345677777765
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.94 E-value=0.12 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999998765
No 483
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.87 E-value=0.15 Score=53.31 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988763
No 484
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.72 E-value=0.083 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.72 E-value=0.13 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.61 E-value=0.13 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998644
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.53 E-value=0.14 Score=54.62 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998765
No 488
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.95 E-value=0.049 Score=52.51 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005252 84 LTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG 104 (706)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.44 E-value=0.14 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44567889999999999999999875
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.37 E-value=0.12 Score=56.87 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005252 84 LTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 491
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.26 E-value=0.095 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 005252 84 LTALMGPSGSGKSTLLDA-LSSR 105 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~-LaG~ 105 (706)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 5554
No 492
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.25 E-value=0.13 Score=56.04 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChHHHHHHHHHHHHhhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 005252 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL---DEPTSGLDSAAAFFVTQTLRCLSRDGR 245 (706)
Q Consensus 169 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv~Ia~aL~~~p~llll---DEPTsgLD~~~~~~i~~~L~~l~~~g~ 245 (706)
.+.++++.++.... ...+|.+|.+++.-...+...|-++++ |.+ + ...+.+..+.+...|.
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~~~~ 244 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEKRGY 244 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhhcCC
Confidence 45566666665432 124889998888777667779999887 443 1 1223333333333465
Q ss_pred EEEEEeCCCchHHHhhCC
Q 005252 246 TVIASIHQPSSEVFELFD 263 (706)
Q Consensus 246 tvI~~~H~p~~~i~~~~D 263 (706)
.+|.++=.-...+.++.+
T Consensus 245 ~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 245 IVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp EEEEECHHHHHHHHSCSS
T ss_pred cEEEEeccchhhHHHHHh
Confidence 666665432344444333
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.17 E-value=0.16 Score=53.11 Aligned_cols=52 Identities=13% Similarity=-0.005 Sum_probs=30.1
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCchHHHhh
Q 005252 210 LMRPRLLFLDEPT-SGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL 261 (706)
Q Consensus 210 ~~~p~llllDEPT-sgLD~~~~~~i~~-~L~~l~~~g~tvI~~~H~p~~~i~~~ 261 (706)
+.++++|++||.- ..+|......++. ++.....+++.+|++|+.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444544 55544334678888888876655443
No 494
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.06 E-value=0.24 Score=48.50 Aligned_cols=72 Identities=21% Similarity=0.092 Sum_probs=53.8
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCchHHHhhCCeEEEEeCCe
Q 005252 200 RRRVSIALEIL--MRPRLLFLDEPTSG--LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (706)
Q Consensus 200 rqRv~Ia~aL~--~~p~llllDEPTsg--LD~~~~~~i~~~L~~l~~~g~tvI~~~H~p~~~i~~~~D~vilL~~G~ 272 (706)
++.+.-++..+ .+.++++|||.+.. ++-.....+++.|.+ +-++..||+|.+.+..++.+++|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44556667777 56799999999763 333444567777653 22578999999999999999999999997543
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.05 E-value=0.033 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005252 84 LTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 84 ~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 496
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.05 E-value=0.26 Score=51.69 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=27.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 005252 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (706)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 104 (706)
...+|+. +-.-.|.-++|.|+||+|||||.-.|..
T Consensus 135 ~~~~H~~-~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 135 VAQIHGV-LLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CEEEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred cceeEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567774 4445688999999999999999887754
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.93 E-value=0.12 Score=57.32 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 005252 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (706)
Q Consensus 81 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 105 (706)
.|=.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999985
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.92 E-value=0.15 Score=53.85 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999997664
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.86 E-value=0.19 Score=49.35 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 005252 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (706)
Q Consensus 82 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 107 (706)
|..++|=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998764
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.85 E-value=0.17 Score=52.97 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 005252 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (706)
Q Consensus 80 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 106 (706)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 455678999999999999999998753
Done!