Query 005253
Match_columns 706
No_of_seqs 404 out of 3191
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1135 mRNA cleavage and poly 100.0 2E-143 5E-148 1163.7 59.6 681 4-706 1-764 (764)
2 COG1782 Predicted metal-depend 100.0 6.6E-66 1.4E-70 543.3 30.6 365 5-385 181-557 (637)
3 KOG1136 Predicted cleavage and 100.0 9.1E-66 2E-70 517.3 28.9 459 3-594 2-469 (501)
4 TIGR03675 arCOG00543 arCOG0054 100.0 8E-64 1.7E-68 573.1 48.5 366 4-385 174-551 (630)
5 KOG1137 mRNA cleavage and poly 100.0 5.3E-61 1.1E-65 509.9 20.6 355 4-367 13-372 (668)
6 COG1236 YSH1 Predicted exonucl 100.0 1.3E-53 2.7E-58 471.2 35.1 342 5-366 1-345 (427)
7 KOG1138 Predicted cleavage and 100.0 3.1E-37 6.8E-42 325.2 23.8 296 52-356 94-428 (653)
8 PF13299 CPSF100_C: Cleavage a 100.0 2.7E-36 5.9E-41 289.1 11.7 116 578-703 1-161 (161)
9 TIGR00649 MG423 conserved hypo 100.0 8.9E-31 1.9E-35 291.6 31.1 305 5-362 1-332 (422)
10 COG0595 mRNA degradation ribon 99.9 4.6E-25 9.9E-30 247.1 28.4 306 3-359 7-340 (555)
11 PF10996 Beta-Casp: Beta-Casp 99.9 1.3E-24 2.7E-29 201.7 10.7 122 241-364 1-126 (126)
12 PRK11244 phnP carbon-phosphoru 99.7 1.6E-16 3.4E-21 165.0 15.5 155 17-205 36-190 (250)
13 TIGR03307 PhnP phosphonate met 99.7 1.6E-15 3.4E-20 156.3 15.8 156 17-206 26-181 (238)
14 TIGR02651 RNase_Z ribonuclease 99.6 7.5E-16 1.6E-20 164.1 12.6 173 6-206 1-234 (299)
15 TIGR02649 true_RNase_BN ribonu 99.6 6.6E-15 1.4E-19 157.2 13.3 171 7-205 1-235 (303)
16 PRK02113 putative hydrolase; P 99.6 3.7E-14 8.1E-19 147.4 14.7 157 18-203 35-193 (252)
17 PRK00055 ribonuclease Z; Revie 99.6 1.7E-14 3.7E-19 151.0 11.9 182 5-206 2-200 (270)
18 PRK00685 metal-dependent hydro 99.5 1.5E-13 3.3E-18 140.5 16.6 153 5-201 1-165 (228)
19 smart00849 Lactamase_B Metallo 99.5 5.8E-14 1.3E-18 137.2 12.9 141 16-180 4-148 (183)
20 TIGR02108 PQQ_syn_pqqB coenzym 99.5 6.7E-14 1.5E-18 148.7 12.6 163 17-202 37-221 (302)
21 PRK05184 pyrroloquinoline quin 99.5 6.3E-14 1.4E-18 149.3 11.4 161 17-203 38-222 (302)
22 PF12706 Lactamase_B_2: Beta-l 99.5 9.2E-14 2E-18 137.8 11.0 151 28-205 1-159 (194)
23 PRK04286 hypothetical protein; 99.5 7.9E-13 1.7E-17 140.6 15.4 242 5-262 1-274 (298)
24 PRK02126 ribonuclease Z; Provi 99.5 5.9E-13 1.3E-17 143.3 14.3 187 4-206 4-280 (334)
25 PRK11921 metallo-beta-lactamas 99.4 1.3E-11 2.9E-16 136.5 20.8 128 17-175 32-163 (394)
26 PF00753 Lactamase_B: Metallo- 99.4 2E-12 4.4E-17 126.2 9.8 188 17-235 5-193 (194)
27 COG1234 ElaC Metal-dependent h 99.4 3.1E-13 6.8E-18 143.0 4.2 225 4-242 1-262 (292)
28 PLN02398 hydroxyacylglutathion 99.3 2.4E-11 5.2E-16 129.7 12.9 134 2-177 73-209 (329)
29 PLN02469 hydroxyacylglutathion 99.3 2E-11 4.3E-16 127.1 11.5 121 19-177 13-138 (258)
30 PRK11709 putative L-ascorbate 99.3 1.1E-10 2.4E-15 126.4 17.7 195 3-237 36-283 (355)
31 PRK05452 anaerobic nitric oxid 99.2 1.5E-11 3.2E-16 138.9 9.1 130 17-175 34-167 (479)
32 PLN02962 hydroxyacylglutathion 99.2 4.8E-11 1E-15 123.4 12.2 136 3-177 9-153 (251)
33 TIGR03413 GSH_gloB hydroxyacyl 99.2 3.3E-11 7.2E-16 125.0 10.5 119 18-178 10-130 (248)
34 TIGR02650 RNase_Z_T_toga ribon 99.2 1.7E-10 3.7E-15 119.3 14.7 221 17-266 8-274 (277)
35 PRK10241 hydroxyacylglutathion 99.2 1.2E-10 2.7E-15 120.9 10.6 117 18-177 12-130 (251)
36 COG0491 GloB Zn-dependent hydr 99.1 7.9E-10 1.7E-14 113.3 11.7 148 17-179 24-172 (252)
37 KOG1361 Predicted hydrolase in 99.0 2.1E-09 4.6E-14 117.7 13.0 176 53-264 111-292 (481)
38 PF13483 Lactamase_B_3: Beta-l 99.0 4.9E-09 1.1E-13 101.6 13.3 156 6-236 1-163 (163)
39 COG1237 Metal-dependent hydrol 99.0 8.5E-10 1.8E-14 111.4 6.5 76 17-92 21-96 (259)
40 KOG0813 Glyoxylase [General fu 98.8 1.5E-08 3.3E-13 103.5 9.5 125 17-177 12-142 (265)
41 PRK11539 ComEC family competen 98.8 3.2E-08 6.9E-13 118.2 13.6 156 5-202 501-666 (755)
42 COG0426 FpaA Uncharacterized f 98.8 1.4E-08 3.1E-13 109.0 9.1 131 16-177 34-168 (388)
43 TIGR00361 ComEC_Rec2 DNA inter 98.8 5E-08 1.1E-12 115.0 14.5 158 5-202 440-608 (662)
44 COG2333 ComEC Predicted hydrol 98.8 1.2E-07 2.7E-12 99.5 15.7 193 17-251 53-259 (293)
45 KOG2121 Predicted metal-depend 98.8 3.5E-09 7.6E-14 119.4 3.5 187 4-205 442-652 (746)
46 COG2220 Predicted Zn-dependent 98.7 1.9E-07 4E-12 97.6 14.4 164 2-202 4-182 (258)
47 COG1235 PhnP Metal-dependent h 98.7 8.1E-08 1.8E-12 100.9 10.3 188 3-206 2-206 (269)
48 COG2248 Predicted hydrolase (m 98.6 1.2E-06 2.6E-11 87.7 14.1 229 5-253 1-266 (304)
49 PF02112 PDEase_II: cAMP phosp 98.3 2.9E-05 6.3E-10 83.2 17.3 194 6-206 2-255 (335)
50 PF14597 Lactamase_B_5: Metall 97.1 0.001 2.3E-08 64.1 6.0 122 13-177 18-139 (199)
51 KOG0814 Glyoxylase [General fu 96.9 0.0019 4.1E-08 61.5 6.4 117 17-175 20-141 (237)
52 KOG3798 Predicted Zn-dependent 96.7 0.0082 1.8E-07 60.6 9.3 140 17-180 87-244 (343)
53 COG5212 PDE1 Low-affinity cAMP 96.1 0.0047 1E-07 62.9 3.7 113 53-178 111-235 (356)
54 PF13691 Lactamase_B_4: tRNase 95.5 0.018 3.8E-07 46.4 4.1 51 17-70 11-63 (63)
55 KOG4736 Uncharacterized conser 94.6 0.088 1.9E-06 54.7 7.0 121 17-180 94-216 (302)
56 KOG1137 mRNA cleavage and poly 93.8 0.24 5.3E-06 55.4 8.7 112 5-119 151-276 (668)
57 KOG3592 Microtubule-associated 92.5 0.082 1.8E-06 60.5 2.8 64 7-76 40-103 (934)
58 COG2015 Alkyl sulfatase and re 92.4 0.08 1.7E-06 58.2 2.5 70 17-89 125-202 (655)
59 KOG1136 Predicted cleavage and 78.9 3.4 7.4E-05 43.8 5.3 31 142-172 2-32 (501)
60 COG1782 Predicted metal-depend 46.8 23 0.00051 39.9 4.2 41 523-569 596-636 (637)
61 KOG1138 Predicted cleavage and 36.4 42 0.00091 37.9 4.2 100 558-658 496-614 (653)
62 PRK11188 rrmJ 23S rRNA methylt 33.4 74 0.0016 31.9 5.3 63 192-254 116-184 (209)
63 PF01728 FtsJ: FtsJ-like methy 21.0 1.6E+02 0.0035 28.4 5.0 64 192-255 90-159 (181)
64 TIGR01465 cobM_cbiF precorrin- 20.7 7.2E+02 0.016 24.8 9.9 60 216-281 59-122 (229)
65 PRK12383 putative mutase; Prov 20.3 61 0.0013 36.2 2.0 32 633-664 106-140 (406)
No 1
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.2e-143 Score=1163.68 Aligned_cols=681 Identities=48% Similarity=0.854 Sum_probs=598.6
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (706)
+++++.+.|+.++++.||+|++|+.+|||||||++.++...+.++...+++||||||||+.+-|+|||||++.++++++|
T Consensus 1 ~i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 1 IIKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAP 80 (764)
T ss_pred CeeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccce
Confidence 36788889999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEE
Q 005253 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (706)
Q Consensus 84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~ 163 (706)
||||.|+++||+++|+|.|+++.+.++|..|+.+|++.+|++|.+++|+|++.+.+++.|++|+||+|||++|+++|+|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~ 160 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKIS 160 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHH
Q 005253 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (706)
Q Consensus 164 ~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ 242 (706)
..+++|+|+.||||++++||+|..|+.+.||.+|||++.++...+++|++|+ .|++.|.++|++||+||||++.+||++
T Consensus 161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvL 240 (764)
T KOG1135|consen 161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVL 240 (764)
T ss_pred ecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHH
Confidence 9999999999999999999999999999999999999999998889999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCCCCC
Q 005253 243 ELLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319 (706)
Q Consensus 243 ELl~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~~~p 319 (706)
||+.+|+++|.+. ++ .+||+++|++++++++||++|+|||++++.+.|+.+|.|||.|+|+.+|++..++.+++++|
T Consensus 241 ELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gp 320 (764)
T KOG1135|consen 241 ELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGP 320 (764)
T ss_pred HHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCC
Confidence 9999999999987 56 69999999999999999999999999999999999999999999999999999999998889
Q ss_pred cEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCC-CceEeecceEEecchhhHHHHHHHHHHH
Q 005253 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRL 398 (706)
Q Consensus 320 ~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~-~~i~~~~~~~v~L~g~el~~~~~~~~~~ 398 (706)
+|||||.++|++|+|+++|.+|++||+|.||||.+.+++|||+.+...+.+ +.+.+.+++||+|+|+||.+|++.+ ++
T Consensus 321 kVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e-~~ 399 (764)
T KOG1135|consen 321 KVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGE-RL 399 (764)
T ss_pred eEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhh-hh
Confidence 999999999999999999999999999999999999999999999866555 8999999999999999999999986 45
Q ss_pred HHHHHHHhhhhcc---cccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcccCC
Q 005253 399 KKEEALKASLVKE---EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475 (706)
Q Consensus 399 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~k 475 (706)
|.|+++.+.+..+ +++.+||++||++ +..+....|..+ ...+..++ .+||++++++++||||+++|
T Consensus 400 r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~~----~~~~~~~~---~~f~~~~~~~~~MFPy~e~r 468 (764)
T KOG1135|consen 400 RNEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDIM----SKAGKSTK---DGFFKSAKSKHPMFPYIEER 468 (764)
T ss_pred hhhhhHHhhccCCccccccccCCcccccc----cccccccchhhh----hccCCccc---ccccccccccCcccCCcHHh
Confidence 5555555544333 2223333333322 333333333211 11122222 57999999999999999999
Q ss_pred ccccCcCcccCCCcc-ccccccchhhhhccCCCCCCCCccc-----cccccCCCCeeEEeecce----------------
Q 005253 476 SEWDDFGEVINPDDY-IIKDEDMDQAAMHIGGDDGKLDEGS-----ASLILDAKPSKVVSNELT---------------- 533 (706)
Q Consensus 476 ~~~DdYGe~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~P~K~v~~~~~---------------- 533 (706)
+|||||||+|+|+|| ...++..+.+.........++.+++ ......+.|+||++.+..
T Consensus 469 ~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGis 548 (764)
T KOG1135|consen 469 RKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGIS 548 (764)
T ss_pred ccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccc
Confidence 999999999999999 3333333333322111111222221 122346789999965532
Q ss_pred -----------------EeEeCCHHHHHHHHHHHhhc--CCCceeecCCCceEEEeeeeeEEEEEeChhhhhcccceecC
Q 005253 534 -----------------VLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 594 (706)
Q Consensus 534 -----------------ilv~g~~~~~~~l~~~~~~~--~~~~v~~p~~~e~v~~~~~~~~~~v~L~d~L~~~l~~~~~~ 594 (706)
|+|||+.++|+.++..|.+. ++++||+|+.||+|++|+++++|+|+|+|.|++.|.|++++
T Consensus 549 DgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~ 628 (764)
T KOG1135|consen 549 DGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVG 628 (764)
T ss_pred cchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeecc
Confidence 99999999999999999985 45899999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeec--------------------------------CCCceeeccCCC-CCCCCcceeecccchhchhhH
Q 005253 595 DYEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPF 641 (706)
Q Consensus 595 ~~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~igd~rL~~lk~~ 641 (706)
+.+||||+|+|... +...++|+|++. .+|.|++++|||+||+||||.
T Consensus 629 ~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~ 708 (764)
T KOG1135|consen 629 DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQL 708 (764)
T ss_pred cceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHH
Confidence 99999999999311 123578999875 567799999999999999999
Q ss_pred HHhCCCceEEeC-cEEEECCeEEEEecCCCCCCCCCCCcccEEEEcCCChhHHHHHHHHHhhcccC
Q 005253 642 LSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 706 (706)
Q Consensus 642 L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~ai~ 706 (706)
|++.|++|||+| |+|+|||+|||||+.+ |+|.|||++|++||+||+++|+|||+|
T Consensus 709 L~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v 764 (764)
T KOG1135|consen 709 LTEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV 764 (764)
T ss_pred HHhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999977 999999999999999999999999986
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=6.6e-66 Score=543.35 Aligned_cols=365 Identities=25% Similarity=0.391 Sum_probs=323.8
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc-cCCccc---cCCCCCccEEEcCCCchhhhccHHHHHHhcCC
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SLLQPL---SKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~-~~l~~l---~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~ 80 (706)
+++|.|||+.+.|+||+||+..+.+||||||.+..... .....+ .+.+..+|||+|||+|+||+|.+|+|++ +||
T Consensus 181 vRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy 259 (637)
T COG1782 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGY 259 (637)
T ss_pred EEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCC
Confidence 78999999999999999999999999999999875531 211111 2334589999999999999999999997 799
Q ss_pred CCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEE
Q 005253 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160 (706)
Q Consensus 81 ~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~ 160 (706)
++|||||.||.+++-++..|+..-....+..++|+..+|..+..+..+++|++..++. +++++|+++|||.+||++.
T Consensus 260 ~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa---PDirLTf~NAGHILGSA~~ 336 (637)
T COG1782 260 DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA---PDIRLTFYNAGHILGSAMA 336 (637)
T ss_pred CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC---CccEEEEecccchhcceee
Confidence 9999999999999988888887666666667899999999999999999999999997 8999999999999999987
Q ss_pred EEEe--CCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccc--ccCCChhhHH-HHHHHHHHHHhcCCeEEEee
Q 005253 161 KITK--DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL--HNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235 (706)
Q Consensus 161 ~I~~--~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~--~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~ 235 (706)
++.. +...|+|||||.+.+.++|++|.- .|.|.+.||+|+||+. ..+++|++.+ +|.+.|++|+++||+||||+
T Consensus 337 HlHIGdGlyNi~yTGDfk~~~trLl~~A~n-~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~ 415 (637)
T COG1782 337 HLHIGDGLYNIVYTGDFKFEKTRLLEPANN-KFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPV 415 (637)
T ss_pred EEEecCCceeEEEecccccceeeecChhhc-cCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7766 457999999999999999999874 5789999999999994 4567888877 99999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhc
Q 005253 236 DSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 314 (706)
Q Consensus 236 ~~~GR~~ELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~ 314 (706)
|++||.||+|..|+++++.+.+ .+|||+ .+|...+++.+..+.|||+..+........+|||..+.++.+.+.++..+
T Consensus 416 fAVGR~QEvM~VLee~mr~g~ipe~PVYl-DGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~ 494 (637)
T COG1782 416 FAVGRSQEVMIVLEEAMRKGLIPEVPVYL-DGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQE 494 (637)
T ss_pred eeccccceehhHHHHHHhcCCCCCCceee-eeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHH
Confidence 9999999999999999999888 599996 58899999999999999999998877766899999999999988776655
Q ss_pred CC--CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceEeecceEEecch
Q 005253 315 AP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG 385 (706)
Q Consensus 315 ~~--~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~~~i~~~~~~~v~L~g 385 (706)
+. +.|||||||||||++|++.++|+.||.||+|+++|+|||++|||||+++. .+|++|+.+
T Consensus 495 i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~----------G~kEipi~~ 557 (637)
T COG1782 495 IIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQS----------GAKEIPIPG 557 (637)
T ss_pred HhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhc----------Cceeccccc
Confidence 43 68999999999999999999999999999999999999999999999995 466666543
No 3
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=9.1e-66 Score=517.32 Aligned_cols=459 Identities=28% Similarity=0.489 Sum_probs=379.6
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCcc-------CCccccCCCCCccEEEcCCCchhhhccHHHHH
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~-------~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~ 75 (706)
..|+++|||.++..|+||+|+.+++.+|++|||++.+++.+ ++..-+.....||.|+|||+|+||+|+|||+.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 57999999877788999999999999999999998776432 22222334567999999999999999999999
Q ss_pred HhcCCCCCeeecchhhhhchhhhHHHHHhhh-ccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC
Q 005253 76 KQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154 (706)
Q Consensus 76 ~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~-~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~ 154 (706)
+-.|+++|||+|.||..+.+.++.|+-+..- ..++.++|+.++|..|+.++..+...|++.++ .++.|++|-|||.
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD---~dl~IrayYAGHV 158 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD---EDLQIRAYYAGHV 158 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec---ccceeeeeecccc
Confidence 9899999999999999999999988744322 23455789999999999999999999999997 7999999999999
Q ss_pred cCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEE
Q 005253 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233 (706)
Q Consensus 155 lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLI 233 (706)
+|+++|.|..++.+|+||||+|.++++||.++++.. .+||+||+|+||+.....+++.|| +|++.+.+++.+||+|||
T Consensus 159 LGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~-~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlI 237 (501)
T KOG1136|consen 159 LGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLI 237 (501)
T ss_pred cceeEEEEEecceeEEEecCccCCcccccchhhhcc-ccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999877 699999999999998777788888 999999999999999999
Q ss_pred eecCchhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHh
Q 005253 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313 (706)
Q Consensus 234 P~~~~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~ 313 (706)
|+|++||+|||..+|+.+|.+.++.+|||+.++...+...||+.++.|-++.+.+++.. .|+|+|+|++.+... ..
T Consensus 238 PvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~--rNmfdfkhiKpfd~~--~~ 313 (501)
T KOG1136|consen 238 PVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVE--RNMFDFKHIKPFDRS--YI 313 (501)
T ss_pred EeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhcc--CCccccccCChhhhh--hh
Confidence 99999999999999999999999999999999999999999999999999999888864 799999998765321 11
Q ss_pred cCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceEeecceEEecchhhHHHHHH
Q 005253 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 393 (706)
Q Consensus 314 ~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~~~i~~~~~~~v~L~g~el~~~~~ 393 (706)
. .++|+|+|||+|||.+|+|.++|++||+||.|+||+.||+..||+|.++.+ ..++|.+.|+-.+.
T Consensus 314 ~-~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~----------G~~kvei~~~~~ei--- 379 (501)
T KOG1136|consen 314 E-APGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLN----------GATKVEIYGTKVEI--- 379 (501)
T ss_pred c-CCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhC----------CccEEEEeeeEEEE---
Confidence 2 289999999999999999999999999999999999999999999999986 24555544321100
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccc
Q 005253 394 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 473 (706)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~ 473 (706)
|.+- + -++ |-.
T Consensus 380 ---rl~V----------------------~----~ma---------------------------FSa------------- 390 (501)
T KOG1136|consen 380 ---RLKV----------------------E----YMA---------------------------FSA------------- 390 (501)
T ss_pred ---EEEE----------------------E----Eee---------------------------ecc-------------
Confidence 0000 0 000 000
Q ss_pred CCccccCcCcccCCCccccccccchhhhhccCCCCCCCCccccccccCCCCeeEEeecceEeEeCCHHHHHHHHHHHhhc
Q 005253 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVLVHGSAEATEHLKQHCLKH 553 (706)
Q Consensus 474 ~k~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~ 553 (706)
..|.=|. ++- ...-.|..+ +||||.+...+-|+....+.
T Consensus 391 ---HaDAkGI------------------m~l--------------i~~csPknV------mlVHGE~~kM~~Lk~ki~~e 429 (501)
T KOG1136|consen 391 ---HADAKGI------------------MQL--------------IKQCSPKNV------MLVHGEKSKMKFLKEKIESE 429 (501)
T ss_pred ---ccCchhH------------------HHH--------------HHhcCcceE------EEEeccchhhHHHHHhhHhh
Confidence 0111111 000 000124444 89999999999999999888
Q ss_pred CCCceeecCCCceEEEeeeeeEEEEEeChhhhhcccceecC
Q 005253 554 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 594 (706)
Q Consensus 554 ~~~~v~~p~~~e~v~~~~~~~~~~v~L~d~L~~~l~~~~~~ 594 (706)
+++..|.|+.||+|.+++.+. .++++.++.+.+|.=-+++
T Consensus 430 ~~ip~~mPaNGetv~i~s~~~-i~~ri~~~~~~~~~k~~~k 469 (501)
T KOG1136|consen 430 FDIPTFMPANGETVVISSTTY-IKARIPDEFLVSLSKPNLK 469 (501)
T ss_pred cCCceeeCCCCCEEEecccce-eeecCcHHHHHHhcCcccc
Confidence 899999999999999998765 5788888877776544443
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=8e-64 Score=573.12 Aligned_cols=366 Identities=25% Similarity=0.377 Sum_probs=320.3
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCcc----CCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS----LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~----~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
.|+|++|||++++|+|||||+.++.+||||||++.+.... .+........+||+|||||+|.||+|++|+|++ .+
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g 252 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YG 252 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hC
Confidence 4899999999999999999999999999999997653111 112222346789999999999999999999986 47
Q ss_pred CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceE
Q 005253 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159 (706)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~ 159 (706)
+++|||||.||.+++..++.|++.........++|+.+++..++.++.+++|++++.+. ++++++++++||++||++
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~---~~i~vt~~~AGHilGsa~ 329 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA---PDIKLTFYNAGHILGSAI 329 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec---CCEEEEEecCccccCceE
Confidence 88999999999999988888876443333344789999999999999999999999996 689999999999999999
Q ss_pred EEEEeC--CeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccccc--CCChhhHH-HHHHHHHHHHhcCCeEEEe
Q 005253 160 WKITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLLP 234 (706)
Q Consensus 160 ~~I~~~--~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~gG~VLIP 234 (706)
|.+..+ ..+|+|||||++.++++++++.. .+.++|+||+|+||+... ++++++++ +|++.|.+++++||+||||
T Consensus 330 ~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~-~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP 408 (630)
T TIGR03675 330 AHLHIGDGLYNIVYTGDFKYEKTRLLDPAVN-KFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIP 408 (630)
T ss_pred EEEEECCCCEEEEEeCCCCCCCCcCccchhh-cCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 998764 36999999999999898887643 346899999999999876 77777777 9999999999999999999
Q ss_pred ecCchhHHHHHHHHHHHHHhcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHh
Q 005253 235 VDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313 (706)
Q Consensus 235 ~~~~GR~~ELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~ 313 (706)
+|++||+|||+.+|+++|+.+.+ ++|||+++ ++.+++++|+.+.|||++++++.+.....|||.+++++.+.+.++..
T Consensus 409 ~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~ 487 (630)
T TIGR03675 409 VFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERR 487 (630)
T ss_pred echhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHH
Confidence 99999999999999999998877 89999976 88999999999999999998887776688999999999999987776
Q ss_pred cCC--CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceEeecceEEecch
Q 005253 314 NAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG 385 (706)
Q Consensus 314 ~~~--~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~~~i~~~~~~~v~L~g 385 (706)
++. .+|||||||+|||++|+++++|++|++||+|+|||||||++||+||+|++ ..+++++.|
T Consensus 488 ~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~----------g~~~i~i~g 551 (630)
T TIGR03675 488 EIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQS----------GWREIPLTD 551 (630)
T ss_pred HHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhc----------CCcEEEecC
Confidence 653 78999999999999999999999999999999999999999999999986 355677777
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=5.3e-61 Score=509.89 Aligned_cols=355 Identities=29% Similarity=0.521 Sum_probs=325.7
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCcc-CCccc-cCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-LLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~-~l~~l-~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
.+.|+|||++.+.|+||+++++.|++|++|||.++++..- .+..+ ..+.+.+|.++|||+|+||+++|||++++..|.
T Consensus 13 ~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~ 92 (668)
T KOG1137|consen 13 QLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFI 92 (668)
T ss_pred cEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeecccc
Confidence 4789999888888999999999999999999999876432 22222 245789999999999999999999999998999
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~ 161 (706)
+.+|+|.||..+.+.++.|+.+.+....+..+|+..|+.++++++.+++|.+.+++. |+++.||.+||.+|+|+|.
T Consensus 93 grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~----gIkf~p~~aGhVlgacMf~ 168 (668)
T KOG1137|consen 93 GRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN----GIKFWPYHAGHVLGACMFM 168 (668)
T ss_pred ceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC----CeEEEeeccchhhhheeee
Confidence 999999999999999999887655444555789999999999999999999999985 9999999999999999999
Q ss_pred EEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchh
Q 005253 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 240 (706)
Q Consensus 162 I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR 240 (706)
++..+-+|+||||+....++||..+.+|+ .+||+||+|+||+...+.+|..|+ +|...|..++.+||+||+|+|++||
T Consensus 169 veiagv~lLyTGd~sreeDrhl~aae~P~-~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgr 247 (668)
T KOG1137|consen 169 VEIAGVRLLYTGDYSREEDRHLIAAEMPP-TGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGR 247 (668)
T ss_pred eeeceEEEEeccccchhhcccccchhCCC-CCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecch
Confidence 99999999999999999999999999887 589999999999998887899999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-C-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCCCC
Q 005253 241 VLELLLILEDYWAEHS-L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318 (706)
Q Consensus 241 ~~ELl~~L~~~~~~~~-l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~~~ 318 (706)
+|||+.+|+++|..+. + ++|||+.|..|++++..|+.+...|++.+.+.+.. .|||-|+++..+++.+.+.. .+
T Consensus 248 AqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~--~Npfifk~vs~L~~~D~f~D--~g 323 (668)
T KOG1137|consen 248 AQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSAL--RNPFIFKHVSILRTGDWFDD--EG 323 (668)
T ss_pred HHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhcc--CCceEeeccccccccccccc--cC
Confidence 9999999999999874 3 89999999999999999999999999999998864 79999999999999988876 58
Q ss_pred CcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcC
Q 005253 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD 367 (706)
Q Consensus 319 p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~ 367 (706)
|+|++||+|||..|.||++|++||+|++|++|++||+.+||+|..+..+
T Consensus 324 P~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~e 372 (668)
T KOG1137|consen 324 PSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSE 372 (668)
T ss_pred CceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999754
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-53 Score=471.25 Aligned_cols=342 Identities=28% Similarity=0.416 Sum_probs=301.6
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCe
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~V 84 (706)
|++.++|++.+.+++|++|+.++.+||+|||+.++... ...++....+++|+++|||+|+||+|++|+++.. +++.||
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~-~~~~~v 78 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRN-GFEGPV 78 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHh-ccCCce
Confidence 46788888888899999999999999999999876542 1222221222799999999999999999999985 367999
Q ss_pred eecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEe
Q 005253 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164 (706)
Q Consensus 85 yaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~ 164 (706)
|+|.||..+++.++.|.+..... ...++|+..|+..+++++++++|++++.+. +++|++|+|||++||++|.++.
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~----~~~v~~~~AGHilGsa~~~le~ 153 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVEVG----GVKVTFYNAGHILGSAAILLEV 153 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCceEee----eEEEEEecCCCccceeEEEEEe
Confidence 99999999999999998754432 455889999999999999999999999996 6999999999999999999999
Q ss_pred CCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHHH
Q 005253 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 243 (706)
Q Consensus 165 ~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~E 243 (706)
++.+|+||||+++.++++++++.++.. +|+||+|+||+...++.++.++ .|.+.|.+++.+||+||||+|++||+||
T Consensus 154 ~~~~ilytGD~~~~~~~l~~~a~~~~~--~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQE 231 (427)
T COG1236 154 DGGRILYTGDVKRRKDRLLNGAELPPC--IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQE 231 (427)
T ss_pred CCceEEEEeccCCCcCCCCCccccCCC--CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHH
Confidence 999999999999999999999986553 7999999999999999888888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcC--CCCCcE
Q 005253 244 LLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA--PDGPKL 321 (706)
Q Consensus 244 Ll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~--~~~p~V 321 (706)
|+.+|+.+|.++ ++|||++|+.+..+..+++.+.+|+.+...+.+... ++.+.+.....+. ..+|+|
T Consensus 232 ll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~v 300 (427)
T COG1236 232 LLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR---------FRFVESRRNSMREGIDKGPAV 300 (427)
T ss_pred HHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---------cccccchhhhhhhhccCCceE
Confidence 999999999877 799999999999999999999999999988877652 3344444432222 278999
Q ss_pred EEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhc
Q 005253 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366 (706)
Q Consensus 322 ilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~ 366 (706)
|+++++|+.+|+++.++..|+++++|.++|++|+.++|+||.+..
T Consensus 301 i~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~ 345 (427)
T COG1236 301 VLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLE 345 (427)
T ss_pred EEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhc
Confidence 999999999999999999999999999999999999999999975
No 7
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=325.18 Aligned_cols=296 Identities=23% Similarity=0.348 Sum_probs=248.7
Q ss_pred CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHh-----------hhcc------------
Q 005253 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS-----------RRQV------------ 108 (706)
Q Consensus 52 ~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~-----------~~~~------------ 108 (706)
...||+||||.+| .+-||||+.++.||.++||+|+||+++|+.+|.+...- .|..
T Consensus 94 ~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk 171 (653)
T KOG1138|consen 94 ASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLK 171 (653)
T ss_pred ccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCch
Confidence 4689999999999 78999999999999999999999999999999886421 1111
Q ss_pred ------CCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecCCCCCccc
Q 005253 109 ------SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182 (706)
Q Consensus 109 ------~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~~~~~~~~ 182 (706)
+..+.|+.+|++.|+.+++.+.|.|++.+. +-+.+||+.+||++||+.|.|....+++-|..+-+... .|
T Consensus 172 ~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlf---ga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~lt-th 247 (653)
T KOG1138|consen 172 KAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLF---GALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLT-TH 247 (653)
T ss_pred hhccccceeeeeehhHHHHHHHhheecccceeeecc---ceEEEEeccccccccccceEEecCCcceEEEecCcccc-cC
Confidence 112689999999999999999999999997 57999999999999999999999999999999877654 45
Q ss_pred cCcccccCCCCCcEEeeccc-cccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHHhcCC-Cc
Q 005253 183 LNGTVLESFVRPAVLITDAY-NALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NY 259 (706)
Q Consensus 183 L~~~~l~~l~~~d~LI~est-~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~~~~l-~~ 259 (706)
..+.+...+...|+||..+- ...... .+..- +|+..|..+++++|+||+||+++|-+.||++.|.+...+.++ +.
T Consensus 248 ~r~md~a~Lk~~Dvli~T~lsql~tan--pd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~ 325 (653)
T KOG1138|consen 248 PRPMDQAGLKETDVLIYTGLSQLPTAN--PDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDT 325 (653)
T ss_pred CccccccccccccEEEEecccccccCC--ccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCC
Confidence 55556666788999997652 222212 23334 899999999999999999999999999999999999998888 89
Q ss_pred cEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCe------EEcCCh-HHHhcCCCCCcEEEEcCCCcCcc
Q 005253 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV------TLLINK-SELDNAPDGPKLVLASMASLEAG 332 (706)
Q Consensus 260 pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~------~~~~s~-~e~~~~~~~p~Vilas~~~l~~G 332 (706)
|+|++|++|...++++....|||+...+.+..- ++.||...++ +...+. .++.+-++.|||||+++++++.|
T Consensus 326 P~yfISpvadSsla~s~ilaEwls~akqnkvyl-pe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfg 404 (653)
T KOG1138|consen 326 PIYFISPVADSSLATSDILAEWLSLAKQNKVYL-PEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFG 404 (653)
T ss_pred cceEecccchhhhhHHHHHHHHHHhhhccceec-cCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhh
Confidence 999999999999999999999999998876654 6788876543 333332 34555458999999999999999
Q ss_pred hHHHHHHHHcCCCCCeEEEecCCC
Q 005253 333 FSHDIFVEWASDVKNLVLFTERGQ 356 (706)
Q Consensus 333 ~s~~~l~~~~~~~~N~Iiltg~~~ 356 (706)
.+.++++-|..+|+|+||||+.--
T Consensus 405 dv~h~~e~~g~sp~NsvI~tdpD~ 428 (653)
T KOG1138|consen 405 DVVHFLECWGLSPKNSVIFTDPDF 428 (653)
T ss_pred HHHHHHHHhcCCCCCceEEeCCCC
Confidence 999999999999999999997643
No 8
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=100.00 E-value=2.7e-36 Score=289.06 Aligned_cols=116 Identities=47% Similarity=0.820 Sum_probs=101.1
Q ss_pred EEeChhhhhcccceecCCceEEEEEEEEeecC--------------C----------------------------C-cee
Q 005253 578 VQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTE--------------N----------------------------G-MLS 614 (706)
Q Consensus 578 v~L~d~L~~~l~~~~~~~~~va~v~g~l~~~~--------------~----------------------------~-~~~ 614 (706)
|+|+|+|+++|+||+++||+||||+|+|...+ . + .++
T Consensus 1 VkL~D~Lv~~Lkwq~v~~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 80 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKVRDYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVLPT 80 (161)
T ss_pred CCCCHHHHhhCCceecCCCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence 68999999999999999999999999999400 0 0 111
Q ss_pred eccC-CCCCCCCcceeecccchhchhhHHHhCCCceEEeC-cEEEECCeEEEEecCCCCCCCCCCCcccEEEEcCCChhH
Q 005253 615 LLPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 692 (706)
Q Consensus 615 l~p~-~~~~~~~~~~~igd~rL~~lk~~L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~y 692 (706)
+.|. ...++.|+++||||+||+|||++|+++||+|||+| |||||||.|+|||+++ |+|+|||++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~Lv~~~~V~VrK~~~----------G~i~ieG~~~~~y 150 (161)
T PF13299_consen 81 LEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVLVCNGGVAVRKSED----------GRIVIEGCLSEDY 150 (161)
T ss_pred cccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeEEECCEEEEEEcCC----------CCEEEEecCchhH
Confidence 1121 12446699999999999999999999999999997 9999999999999998 9999999999999
Q ss_pred HHHHHHHHhhc
Q 005253 693 YKIRAYLYSQF 703 (706)
Q Consensus 693 y~Vr~~iy~~~ 703 (706)
|+||++||+||
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999998
No 9
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=8.9e-31 Score=291.62 Aligned_cols=305 Identities=16% Similarity=0.220 Sum_probs=220.3
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc-c-------CCccccCCCCCccEEEcCCCchhhhccHHHHHH
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-S-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~-~-------~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~ 76 (706)
++|++|||.++.|+|||+|+.++..+|||||....... . .+..+.....++++|||||+|.||+||+|++..
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 57899999999999999999999999999998532110 0 011223335689999999999999999999987
Q ss_pred hcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC-c
Q 005253 77 QLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-L 155 (706)
Q Consensus 77 ~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-l 155 (706)
.++ ..|||++..+..+.+..+. .. .++. ...+..+++++++.++ ++++|++++++|+ +
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~~----~~----~~~~---------~~~~~~~~~~~~~~ig---~~~~v~~~~~~H~~p 139 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKIK----EN----KLNV---------RTDLLEIHEGEPIETG---ENHTIEFIRITHSIP 139 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHHH----hc----CCCC---------CCceEEeCCCCEEEeC---CceEEEEEECCCCCc
Confidence 543 4689999999876542221 00 0000 0235778899999995 4699999999994 8
Q ss_pred CceEEEEEeCCeEEEEEecCCCCCccccC-cccccCC-----CCCcEEeeccccccccCCChhhHH-HHHHHHHHHH-hc
Q 005253 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL-RA 227 (706)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~~~~~L~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl-~~ 227 (706)
|+++|+++.++++++||||+......... +.++..+ .++|+||+|+||+... .+...+ .+.+.+.+.+ +.
T Consensus 140 ~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~--~~~~~e~~~~~~i~~~~~~~ 217 (422)
T TIGR00649 140 DSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENP--GFTPSEAKVLEQLNDIFKNA 217 (422)
T ss_pred ceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHhC
Confidence 99999999988999999999886544332 2222111 3479999999998632 222223 5566666666 46
Q ss_pred CCeEEEeecC--chhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEE
Q 005253 228 GGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305 (706)
Q Consensus 228 gG~VLIP~~~--~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~ 305 (706)
+|.+++|+|+ .+|+|+++.++..+ +.||++.+.++.++++.++.+ .|+.. | ....
T Consensus 218 ~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~------------~----~~~~ 274 (422)
T TIGR00649 218 KGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKN------------P----HNNF 274 (422)
T ss_pred CCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccC------------C----ccce
Confidence 8899999999 89999999988876 689999999999999888764 44322 1 1111
Q ss_pred cCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCC--------CCeEEEecCCCCCChhH
Q 005253 306 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV--------KNLVLFTERGQFGTLAR 362 (706)
Q Consensus 306 ~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~--------~N~Iiltg~~~~~Tl~~ 362 (706)
...+++.+.++++.||++|++ .+|+ ...|.+++.++ .++|||+ +++++|+
T Consensus 275 -~~~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s---~~~~~G~ 332 (422)
T TIGR00649 275 -ISLKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFS---APPIPGN 332 (422)
T ss_pred -eCHHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEE---CCCCCcH
Confidence 146677777567899999888 4445 88888999875 3678887 3444444
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.94 E-value=4.6e-25 Score=247.13 Aligned_cols=306 Identities=17% Similarity=0.188 Sum_probs=226.4
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCcc--------CCccccCCCCCccEEEcCCCchhhhccHHHH
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS--------LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~--------~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L 74 (706)
+.++|++|||.++.|.|||+++.++..+++|||.....+.. ....+.....+|++|||||+|.||+||+|||
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~l 86 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYL 86 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHH
Confidence 46999999999999999999999999999999986432210 1122344567999999999999999999999
Q ss_pred HHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC
Q 005253 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154 (706)
Q Consensus 75 ~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~ 154 (706)
+.+.. .+|||+|..|..+.+.-+.+. . ....+..+..++.+..+.++ ++.|++++.-|+
T Consensus 87 l~~~~-~~piy~s~lt~~Li~~k~~~~----~------------~~~~~~~~~ev~~~~~i~~~----~~~v~f~~vtHS 145 (555)
T COG0595 87 LKQVL-FAPIYASPLTAALIKEKLKEH----G------------LFKNENELHEVKPGSEIKFG----SFEVEFFPVTHS 145 (555)
T ss_pred HhcCC-cCceecCHhhHHHHHHHHHHh----c------------cccccCceEEeCCCCeEEeC----cEEEEEEeeccc
Confidence 98543 499999999998876443311 0 01112357888999999985 899999999997
Q ss_pred -cCceEEEEEeCCeEEEEEecCCCCCccccCc-ccccCC-----CCCcEEeeccccccccCCChhhH--H-HHHHHHHHH
Q 005253 155 -LGGTVWKITKDGEDVIYAVDYNRRKEKHLNG-TVLESF-----VRPAVLITDAYNALHNQPPRQQR--E-MFQDAISKT 224 (706)
Q Consensus 155 -lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~-~~l~~l-----~~~d~LI~est~~~~~~~~r~~~--~-~l~~~I~~t 224 (706)
|+++++.|.++...|+|||||.......... .++..+ ....+||||+|++..+.-+..++ . .+.+.+..
T Consensus 146 IPds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~- 224 (555)
T COG0595 146 IPDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRN- 224 (555)
T ss_pred CccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHh-
Confidence 6899999999999999999999887665522 333221 24789999999988443222222 2 44444444
Q ss_pred HhcCCeEEEeecCc--hhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCC
Q 005253 225 LRAGGNVLLPVDSA--GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKH 302 (706)
Q Consensus 225 l~~gG~VLIP~~~~--GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~ 302 (706)
..|.|++.+|++ +|+|.++.+.... +.++++.+..+.+....++...-|... .
T Consensus 225 --a~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~-----------------~ 279 (555)
T COG0595 225 --AKGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLP-----------------D 279 (555)
T ss_pred --CCCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCc-----------------c
Confidence 388999999995 8999999988776 789999999999999988876443221 1
Q ss_pred eEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCC--------CCCeEEEecCCCCCC
Q 005253 303 VTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD--------VKNLVLFTERGQFGT 359 (706)
Q Consensus 303 ~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~--------~~N~Iiltg~~~~~T 359 (706)
-.++ +..++.+++..--+|+|++.. |.-...|.+++.+ +..++||+....||.
T Consensus 280 ~~~i-~~~~~~~~~~~~~lii~TG~q---gep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgn 340 (555)
T COG0595 280 ESFI-EIREVKRYPDEEVLIICTGSQ---GEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGN 340 (555)
T ss_pred cccc-CHHHhccccccceEEEEeCCC---CCchhhhhHhhcCCccceecCCCCeEEEeccCcCCc
Confidence 1122 355666665556688888877 6556666777655 456899998888884
No 11
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.91 E-value=1.3e-24 Score=201.67 Aligned_cols=122 Identities=38% Similarity=0.640 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCC--CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCC--
Q 005253 241 VLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-- 316 (706)
Q Consensus 241 ~~ELl~~L~~~~~~~~l--~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~-- 316 (706)
+|||+.+|+++|.++.+ ++|||++|+++.+++++|+++.|||++++++.+.....+ .|++++.+.+.++..++.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 78 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDN--PFDNFKFVKSVDESKELNAL 78 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTT--TTTTEEEEESHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCC--CCCCeEEecccccccccccC
Confidence 69999999999999876 799999999999999999999999999998888764433 567777887777665531
Q ss_pred CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHH
Q 005253 317 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364 (706)
Q Consensus 317 ~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L 364 (706)
++|||||||++||++|+|+++|++|++||+|+||||||+++||+||+|
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 699999999999999999999999999999999999999999999986
No 12
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=165.03 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
.++|++|+.++..||||||... . . .. ..+.+||+|||||.|.||++|++.+........+||++..+..+..
T Consensus 36 ~~~s~li~~~~~~iLiD~G~~~-~-~---~~--~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~- 107 (250)
T PRK11244 36 RPCSALIEFNGARTLIDAGLPD-L-A---ER--FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD- 107 (250)
T ss_pred ceeEEEEEECCCEEEEECCChH-H-h---hc--CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-
Confidence 5778999999999999999632 1 1 11 2346899999999999999999887543234678999876543211
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecCC
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~~ 176 (706)
.+. ... + ......+..++.+.++ +++|++++..|+.++.+|+|+.++++++|+||+.
T Consensus 108 ----~~~-~~~-----------~---~~~~~~l~~~~~~~~~----~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 108 ----LFK-HPG-----------I---LDFSHPLEPFEPFDLG----GLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred ----Hhc-Ccc-----------c---cccccccCCCCCeeEC----CEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCC
Confidence 110 000 0 0001235567788885 8999999999999999999999999999999997
Q ss_pred CCCccccCcccccCCCCCcEEeecccccc
Q 005253 177 RRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 177 ~~~~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
...+.... +-...++|+||.|+++..
T Consensus 165 ~~~~~~~~---~~~~~~~Dlli~e~~~~~ 190 (250)
T PRK11244 165 GLPEDTLK---FLRNNQPDLLVLDCSHPP 190 (250)
T ss_pred CCCHHHHH---HHhcCCCCEEEEeCcCCC
Confidence 65432110 000136899999998864
No 13
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.66 E-value=1.6e-15 Score=156.34 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=109.7
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
.++|++|+.++..||||||+.. . . .. ....+||+|||||.|.||++|++.+....+...+||++..+..+.
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~-~-~---~~--~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~-- 96 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTD-L-A---ER--FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCD-- 96 (238)
T ss_pred cceEEEEEECCcEEEEECCChh-H-h---hc--cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHH--
Confidence 6788999999999999999642 1 1 11 234689999999999999999987754434468899988764321
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecCC
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~~ 176 (706)
+... .. . + ......+..++.+.++ +++|+++++.|..++.+|+|+.++++++|+||+.
T Consensus 97 ---~~~~-~~---~--------~---~~~~~~~~~~~~~~~~----~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 97 ---DLFK-HP---G--------I---LDFSKPLEAFEPFDLG----GLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred ---HHhc-Cc---c--------c---ccccccccCCceEEEC----CEEEEEEecCCCCcceEEEEecCCcEEEEEecCC
Confidence 1110 00 0 0 0001235667888885 8999999999999999999999999999999997
Q ss_pred CCCccccCcccccCCCCCcEEeeccccccc
Q 005253 177 RRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 177 ~~~~~~L~~~~l~~l~~~d~LI~est~~~~ 206 (706)
...+.... +-.-.++|+||+|+++...
T Consensus 155 ~~~~~~~~---~~~~~~~D~li~e~~~~~~ 181 (238)
T TIGR03307 155 GLPPDTEA---FLKNHPLDVLILDCSHPPQ 181 (238)
T ss_pred CCCHHHHH---HHhcCCCCEEEEeCCcCcc
Confidence 54432111 0001268999999988643
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.65 E-value=7.5e-16 Score=164.12 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=117.4
Q ss_pred EEEEeecCCC-----CCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC-
Q 005253 6 QVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG- 79 (706)
Q Consensus 6 ~~t~LgGa~~-----~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g- 79 (706)
++++||.++. ...+|++|+.++..+|||||... ...+...+....++++|||||.|.||++|++.+.....
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~---~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~ 77 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT---QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSF 77 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH---HHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhcc
Confidence 4677765443 26789999999999999999642 11222222345679999999999999999998875322
Q ss_pred ----CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCC-EEEecccCCCEEEEEEeCCCC
Q 005253 80 ----LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ-NYHLSGKGEGIVVAPHVAGHL 154 (706)
Q Consensus 80 ----~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q-~~~l~~~~~gl~it~~~aGH~ 154 (706)
...+||++..+....+..+. ..... ..+. -.+..+..++ .+.. ++++|++++.-|.
T Consensus 78 ~~~~~~i~Iy~p~~~~~~l~~~~~----~~~~~---~~~~--------~~~~~~~~~~~~~~~----~~~~v~~~~~~H~ 138 (299)
T TIGR02651 78 QGRKEPLTIYGPPGIKEFIETSLR----VSYTY---LNYP--------IKIHEIEEGGLVFED----DGFKVEAFPLDHS 138 (299)
T ss_pred CCCCceEEEECCccHHHHHHHHHH----HcccC---CCce--------EEEEEccCCCceEec----CCEEEEEEEcCCC
Confidence 14679998887654332111 00000 0000 1344556565 4665 4899999999999
Q ss_pred cCceEEEEEeC--------------------------------------------------CeEEEEEecCCCCCccccC
Q 005253 155 LGGTVWKITKD--------------------------------------------------GEDVIYAVDYNRRKEKHLN 184 (706)
Q Consensus 155 lGs~~~~I~~~--------------------------------------------------~~~IlytGD~~~~~~~~L~ 184 (706)
..+.+|+|+.+ +.+++|+||+...++
T Consensus 139 ~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~---- 214 (299)
T TIGR02651 139 IPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEE---- 214 (299)
T ss_pred CceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHH----
Confidence 88999999864 358999999987542
Q ss_pred cccccCCCCCcEEeeccccccc
Q 005253 185 GTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 185 ~~~l~~l~~~d~LI~est~~~~ 206 (706)
..+.+.++|+||+||+|...
T Consensus 215 --~~~~~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 215 --VIEFAKNADLLIHEATFLDE 234 (299)
T ss_pred --HHHHHcCCCEEEEECCCCch
Confidence 11224578999999998763
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.59 E-value=6.6e-15 Score=157.24 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=114.6
Q ss_pred EEEeecCCCC-----CCeEEEEEEC----CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHh
Q 005253 7 VTPLSGVFNE-----NPLSYLVSID----GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (706)
Q Consensus 7 ~t~LgGa~~~-----g~sc~LL~~~----~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~ 77 (706)
+++||.++.. +.+|++++.+ +.++|||||... ...+......+.+||+|||||.|.||++|+|.++..
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~---~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~ 77 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCS 77 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccH---HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHH
Confidence 3566544322 7888999875 378999999753 122222333457899999999999999999987642
Q ss_pred c---C--CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCC
Q 005253 78 L---G--LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152 (706)
Q Consensus 78 ~---g--~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aG 152 (706)
. + ...+||++..+....+..+. . .. .+..+. -.+..+..++.+.. ++++|++++.-
T Consensus 78 ~~~~~~~~~l~Iygp~~~~~~l~~~~~-~---~~---~~~~~~--------~~~~~i~~~~~~~~----~~~~v~~~~~~ 138 (303)
T TIGR02649 78 RSMSGIIQPLTIYGPQGIREFVETALR-I---SG---SWTDYP--------LEIVEIGAGEILDD----GLRKVTAYPLE 138 (303)
T ss_pred HHhcCCCCCeEEEechhHHHHHHHHHH-h---cc---cccCCc--------eEEEEcCCCceEec----CCeEEEEEEcc
Confidence 1 1 24689999887664332211 0 00 000000 13455555666665 37999999999
Q ss_pred CCcCceEEEEEe--------------------------------------------------CCeEEEEEecCCCCCccc
Q 005253 153 HLLGGTVWKITK--------------------------------------------------DGEDVIYAVDYNRRKEKH 182 (706)
Q Consensus 153 H~lGs~~~~I~~--------------------------------------------------~~~~IlytGD~~~~~~~~ 182 (706)
|...+.+|+|+. ++.+|+|+||+.....
T Consensus 139 H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-- 216 (303)
T TIGR02649 139 HPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-- 216 (303)
T ss_pred CccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHH--
Confidence 998999999975 3568999999987532
Q ss_pred cCcccccCCCCCcEEeecccccc
Q 005253 183 LNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 183 L~~~~l~~l~~~d~LI~est~~~ 205 (706)
..+.+.++|+||+|++|..
T Consensus 217 ----~~~~~~~adlLi~Eat~~~ 235 (303)
T TIGR02649 217 ----ALDLAKGVDVMVHEATLDI 235 (303)
T ss_pred ----HHHHhcCCCEEEEeccCCh
Confidence 1122468999999999864
No 16
>PRK02113 putative hydrolase; Provisional
Probab=99.56 E-value=3.7e-14 Score=147.39 Aligned_cols=157 Identities=21% Similarity=0.198 Sum_probs=105.3
Q ss_pred CeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHh-cCCCCCeeecchhhhhchh
Q 005253 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ-LGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 18 ~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~-~g~~~~VyaT~pt~~l~~~ 96 (706)
++|++|+.++..||||||.... ..+. .....++|+|||||.|.||++|++.+... .....+||++..+.+....
T Consensus 35 ~~s~li~~~~~~iLiD~G~g~~---~~l~--~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 109 (252)
T PRK02113 35 RTSALVETEGARILIDCGPDFR---EQML--RLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred eeEEEEEECCeEEEEECCchHH---HHHH--hcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHh
Confidence 4679999999999999996321 1111 12456899999999999999999987532 1236789998876554321
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC-cCceEEEEEeCCeEEEEEecC
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-LGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-lGs~~~~I~~~~~~IlytGD~ 175 (706)
.....+ ....++... ..++..++.++++.++ +++|++++.-|. ..+.+|++ ++++|+||+
T Consensus 110 ~~~~~~----~~~~~~~~~-------~~~~~~~~~g~~~~~~----~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt 170 (252)
T PRK02113 110 RMPYCF----VEHSYPGVP-------NIPLREIEPDRPFLVN----HTEVTPLRVMHGKLPILGYRI----GKMAYITDM 170 (252)
T ss_pred hCCeee----ccCCCCCCc-------ceeeEEcCCCCCEEEC----CeEEEEEEecCCCccEEEEEe----CCEEEccCC
Confidence 110000 000011000 1245677788889885 899999999996 35778888 579999999
Q ss_pred CCCCccccCcccccCCCCCcEEeecccc
Q 005253 176 NRRKEKHLNGTVLESFVRPAVLITDAYN 203 (706)
Q Consensus 176 ~~~~~~~L~~~~l~~l~~~d~LI~est~ 203 (706)
...++.. ++.+.++|+||+|+++
T Consensus 171 ~~~~~~~-----~~~~~~~DlLi~e~~~ 193 (252)
T PRK02113 171 LTMPEEE-----YEQLQGIDVLVMNALR 193 (252)
T ss_pred CCCCHHH-----HHHhcCCCEEEEhhhc
Confidence 7544321 1224578999999976
No 17
>PRK00055 ribonuclease Z; Reviewed
Probab=99.56 E-value=1.7e-14 Score=151.02 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=107.1
Q ss_pred EEEEEeecCCCC-----CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc-
Q 005253 5 VQVTPLSGVFNE-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL- 78 (706)
Q Consensus 5 m~~t~LgGa~~~-----g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~- 78 (706)
|++++||.++.. +++|++|+.++.++|||||... ...+......+.++|+|||||.|.||++|+|.+...+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~---~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~ 78 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGT---QRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRS 78 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHH---HHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhh
Confidence 899999765542 5899999999999999999642 1112222234568999999999999999999887432
Q ss_pred ----CCCCCeeecchhhhhchhhhHHHHHhh--hc-cCCC-CCCCHHhHHHhhcccEEecCCCEE-EecccCCCEEEEEE
Q 005253 79 ----GLSAPVFSTEPVYRLGLLTMYDQYLSR--RQ-VSEF-DLFTLDDIDSAFQSVTRLTYSQNY-HLSGKGEGIVVAPH 149 (706)
Q Consensus 79 ----g~~~~VyaT~pt~~l~~~~l~d~~~~~--~~-~~~~-~~~~~~dv~~~~~~i~~v~y~q~~-~l~~~~~gl~it~~ 149 (706)
....+||++..+..+.+.++. ..... .. .... ..+....+.. .. ++.+..+ .+. .+.++..
T Consensus 79 ~~~~~~~l~iy~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~---~g~~~~~- 148 (270)
T PRK00055 79 LSGRTEPLTIYGPKGIKEFVETLLR-ASGSLGYRIAEKDKPGKLDAEKLKA--LG---VPPGPLFGKLK---RGEDVTL- 148 (270)
T ss_pred hcCCCceEEEECCccHHHHHHHHHH-HhhceeEEEEEcCCCCCCCHHHHHH--CC---CCCCchHHHhh---CCCeEEe-
Confidence 124679998877665432221 10000 00 0000 1222221110 00 0001000 111 1233322
Q ss_pred eCCCC--cCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccc
Q 005253 150 VAGHL--LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 150 ~aGH~--lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~ 206 (706)
.+|. .++.+++++.++.+++|+||+...++ ..+.+.++|+||+||+|...
T Consensus 149 -~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~------~~~~~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 149 -EDGRIINPADVLGPPRKGRKVAYCGDTRPCEA------LVELAKGADLLVHEATFGDE 200 (270)
T ss_pred -CCCcEEeHHHeeccCCCCcEEEEeCCCCCcHH------HHHHhCCCCEEEEeccCCcc
Confidence 2333 26678888888899999999987642 11223578999999998653
No 18
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.54 E-value=1.5e-13 Score=140.45 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=108.6
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCe
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~V 84 (706)
|+++.| |.+|++|+.++.+|||||+....... .+.....++|+|||||.|.||++++..+..+ ..++|
T Consensus 1 m~i~~l------G~s~~li~~~~~~iLiDP~~~~~~~~----~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v 68 (228)
T PRK00685 1 MKITWL------GHSAFLIETGGKKILIDPFITGNPLA----DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATV 68 (228)
T ss_pred CEEEEE------cceEEEEEECCEEEEECCCCCCCCCC----CCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEE
Confidence 578888 46899999999999999976421111 1111223899999999999999998877653 36889
Q ss_pred eecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcC--------
Q 005253 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG-------- 156 (706)
Q Consensus 85 yaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lG-------- 156 (706)
|++..+....+ .. . +.++..++.++.+.++ +++|+++++-|...
T Consensus 69 ~~~~~~~~~~~--------~~----~------------~~~~~~~~~~~~~~~~----~~~i~~~p~~H~~~~~~~~~~~ 120 (228)
T PRK00685 69 IANAELANYLS--------EK----G------------VEKTHPMNIGGTVEFD----GGKVKLTPALHSSSFIDEDGIT 120 (228)
T ss_pred EEeHHHHHHHH--------hc----C------------CCceeeccCCCcEEEC----CEEEEEEEEEcCCCCcCCCCcc
Confidence 98765433211 00 0 1245677788888885 89999999888654
Q ss_pred ----ceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeecc
Q 005253 157 ----GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 201 (706)
Q Consensus 157 ----s~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~es 201 (706)
..+|+|+.++.+|+|+||+...++.. .+....++|++++..
T Consensus 121 ~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~----~~~~~~~~D~~~~~~ 165 (228)
T PRK00685 121 YLGNPTGFVITFEGKTIYHAGDTGLFSDMK----LIGELHKPDVALLPI 165 (228)
T ss_pred cCCCceEEEEEECCeEEEEecCccchhHHH----HHHHhhCCCEEEEec
Confidence 48999999999999999998765321 111224679888764
No 19
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.53 E-value=5.8e-14 Score=137.16 Aligned_cols=141 Identities=26% Similarity=0.290 Sum_probs=98.5
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCCccC---CccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSL---LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~~~~---l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
..++|++|+.++..+|||||+.... .. +..++ ..++++|++||.|.||+||++.+.+. .+++||++..+..
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~--~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE--DLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH--HHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 3689999999999999999965321 12 22232 67999999999999999999999875 4789999888776
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeEEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIY 171 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~Ily 171 (706)
..+...... +...........+..+..++++.++ +.++++++ +||++|+++|.+. +.+++|
T Consensus 78 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~~~~~~~~--~~~vl~ 139 (183)
T smart00849 78 LLKDLLKLG------------GALGAEAPPPPPDRTLKDGEELDLG----GLELEVIHTPGHTPGSIVLYLP--EGKILF 139 (183)
T ss_pred HHhccchhc------------cccCcCCCCCccceecCCCCEEEeC----CceEEEEECCCCCCCcEEEEEC--CCCEEE
Confidence 443221110 0000011112345667888999885 45555444 5999999987774 489999
Q ss_pred EecCCCCCc
Q 005253 172 AVDYNRRKE 180 (706)
Q Consensus 172 tGD~~~~~~ 180 (706)
+||+....+
T Consensus 140 ~gD~~~~~~ 148 (183)
T smart00849 140 TGDLLFSGG 148 (183)
T ss_pred ECCeeeccC
Confidence 999987654
No 20
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.52 E-value=6.7e-14 Score=148.65 Aligned_cols=163 Identities=14% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCeEEEEEE-CCeEEEEeCCCCCCCCccCCccc----cCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhh
Q 005253 17 NPLSYLVSI-DGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVY 91 (706)
Q Consensus 17 g~sc~LL~~-~~~~ILiDcG~~~~~~~~~l~~l----~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~ 91 (706)
.++|++|+. ++.+||||||.+.......+..+ +....+||+|||||.|.||++||+.|.+ ....|||++..|.
T Consensus 37 ~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~ 114 (302)
T TIGR02108 37 TQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVL 114 (302)
T ss_pred cccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHH
Confidence 567889976 45799999997532111112222 3446789999999999999999999964 3579999999987
Q ss_pred hhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecc-cCCCEEEEEEeCC--------C------CcC
Q 005253 92 RLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG-KGEGIVVAPHVAG--------H------LLG 156 (706)
Q Consensus 92 ~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~-~~~gl~it~~~aG--------H------~lG 156 (706)
+..+.. ..+.... ...-....+..++++.+.. ..++++|++++.- | ...
T Consensus 115 ~~L~~~-----------~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~ 178 (302)
T TIGR02108 115 QDLSDN-----------PIFNVLD-----HWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGD 178 (302)
T ss_pred HHHHhC-----------CCccccc-----hhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCC
Confidence 643210 0111110 0011224556667776641 1136999999987 4 135
Q ss_pred ceEEEEEeC--CeEEEEEecCCCCCccccCcccccCCCCCcEEeeccc
Q 005253 157 GTVWKITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (706)
Q Consensus 157 s~~~~I~~~--~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est 202 (706)
+++|+|+.+ +.+++|++|++...+. .+..+..+|+||+|++
T Consensus 179 ~~Gy~i~~~~~g~~~~y~tD~g~~~~~-----~~~~l~~~d~liida~ 221 (302)
T TIGR02108 179 TLGLKIEDGTTGKRLFYIPGCAEITDD-----LKARMAGADLVFFDGT 221 (302)
T ss_pred cEEEEEEeCCCCcEEEEECCCCCCCHH-----HHHHHhCCCEEEEeCC
Confidence 789999988 8999999999754432 2233567899999997
No 21
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.51 E-value=6.3e-14 Score=149.31 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=105.4
Q ss_pred CCeEEEEEECC-eEEEEeCCCCCCCCccCCccc-------cCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecc
Q 005253 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPL-------SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (706)
Q Consensus 17 g~sc~LL~~~~-~~ILiDcG~~~~~~~~~l~~l-------~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~ 88 (706)
..+|++|+.++ .+||||||.+... .+... +....+||+|||||.|.||++||+.|.. +...+||++.
T Consensus 38 ~~ss~li~~~g~~~iLiD~G~g~~~---ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~ 112 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNASPDIRQ---QIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATP 112 (302)
T ss_pred cccEEEEEcCCCEEEEEECChhHHH---HHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCH
Confidence 46789998766 4699999964211 11111 2244589999999999999999999854 4578999998
Q ss_pred hhhhhchhhhHHHHHhhhccCCCCCCCH-HhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCC-------------C
Q 005253 89 PVYRLGLLTMYDQYLSRRQVSEFDLFTL-DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-------------L 154 (706)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~~~~~~~~~~-~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH-------------~ 154 (706)
.+.+..+.. ++.|.. ... .. -.+..+..++++.+. ..++++|++++.-| .
T Consensus 113 ~~~~~l~~~-------------~~~f~~~~~~-~~-~~~~~i~~~~~~~i~-~~~~~~Vt~~~v~H~~~~~~~~~~~~h~ 176 (302)
T PRK05184 113 AVLEDLSTG-------------FPIFNVLDHY-GG-VQRRPIALDGPFAVP-GLPGLRFTAFPVPSKAPPYSPHRSDPEP 176 (302)
T ss_pred HHHHHHHhc-------------CCcccccccc-cc-eeeEEecCCCceEec-CCCCcEEEEEEcCCCCCcccccccCCCC
Confidence 876543211 001110 000 00 134456666677763 11379999999865 3
Q ss_pred cCceEEEEE--eCCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccc
Q 005253 155 LGGTVWKIT--KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203 (706)
Q Consensus 155 lGs~~~~I~--~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~ 203 (706)
..+.+|+|+ .++++++|++|.....+. .+..+..+|+||+|+++
T Consensus 177 ~~~~gyri~~~~~g~~~~y~tD~~~~~~~-----~~~~~~gaDlli~da~~ 222 (302)
T PRK05184 177 GDNIGLRIEDRATGKRLFYAPGLAEVTDA-----LRARLAGADCVLFDGTL 222 (302)
T ss_pred CCeEEEEEEecCCCcEEEEECCCCCCCHH-----HHHHHhcCCEEEEeCCC
Confidence 568899995 677899999887543322 22234578999999973
No 22
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.50 E-value=9.2e-14 Score=137.83 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=100.6
Q ss_pred eEEEEeCCCCCC---CCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc-CCCCCeeecchhhhhchhhhHHHHH
Q 005253 28 FNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-GLSAPVFSTEPVYRLGLLTMYDQYL 103 (706)
Q Consensus 28 ~~ILiDcG~~~~---~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~-g~~~~VyaT~pt~~l~~~~l~d~~~ 103 (706)
.+||||||.+.. .......... ..+.+|+|||||.|.||+.|++.+.... ....+||++..+.+..+.. .+.
T Consensus 1 ~~iLiD~g~~~~~~~~~~~~~~~~~-~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~---~~~ 76 (194)
T PF12706_consen 1 HRILIDCGPGTRSLRLRQQIMQELE-DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY---KFG 76 (194)
T ss_dssp SEEEESE-TTHHHHTHCHHHTCSSS-SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH---HHT
T ss_pred CEEEEeCCCCccccccccccccccc-ccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh---hcc
Confidence 479999998532 1001111111 2248999999999999999988776532 1112899998887765421 000
Q ss_pred hhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceE----EEEEeCCeEEEEEecCCCCC
Q 005253 104 SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV----WKITKDGEDVIYAVDYNRRK 179 (706)
Q Consensus 104 ~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~----~~I~~~~~~IlytGD~~~~~ 179 (706)
.. ..++. .....+..+..++.+.++ +++|+++++.|..++++ |+|+.++.+|+|+||++. .
T Consensus 77 ~~---~~~~~-------~~~~~~~~~~~~~~~~~~----~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~-~ 141 (194)
T PF12706_consen 77 IL---DLYPE-------EDNFDIIEISPGDEFEIG----DFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY-D 141 (194)
T ss_dssp HH---TTCCT-------TSGEEEEEECTTEEEEET----TEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS-C
T ss_pred cc---ccccc-------ccceeEEEeccCceEEec----eEEEEEEeccccccccccCceEEEecCCcceEEeeccch-h
Confidence 00 00000 001245566777788885 89999999999999988 999999999999999998 1
Q ss_pred ccccCcccccCCCCCcEEeecccccc
Q 005253 180 EKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 180 ~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
+..+.++|++|+++++..
T Consensus 142 --------~~~~~~~D~li~~~~~~~ 159 (194)
T PF12706_consen 142 --------FEELKNIDLLILECGYID 159 (194)
T ss_dssp --------HHHHTTBSEEEEEBCBSS
T ss_pred --------hhhhccCCEEEEeCCCcc
Confidence 223467999999998874
No 23
>PRK04286 hypothetical protein; Provisional
Probab=99.46 E-value=7.9e-13 Score=140.62 Aligned_cols=242 Identities=13% Similarity=0.143 Sum_probs=128.0
Q ss_pred EEEEEeecCC-CCCCeEEEEEECCeEEEEeCCCCCCCCc--------------cCCccccCCCCCccEEEcCCCchhhhc
Q 005253 5 VQVTPLSGVF-NENPLSYLVSIDGFNFLIDCGWNDHFDP--------------SLLQPLSKVASTIDAVLLSHPDTLHLG 69 (706)
Q Consensus 5 m~~t~LgGa~-~~g~sc~LL~~~~~~ILiDcG~~~~~~~--------------~~l~~l~~~~~~IdaIlLTH~H~DHiG 69 (706)
|+|.+||... +..++|++|+.++.+||||+|....... +.+..+.....++|+|||||.|.||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 5788885422 2246999999999999999995421100 112223445678999999999999998
Q ss_pred cHHHHHHhc---CCCCCeeecchhhhhchhh-hHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEE
Q 005253 70 ALPYAMKQL---GLSAPVFSTEPVYRLGLLT-MYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145 (706)
Q Consensus 70 gLp~L~~~~---g~~~~VyaT~pt~~l~~~~-l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~ 145 (706)
++..+.-.. .+..+||++.++....... +..... .. .. .-...+... .....+..++.+.++ +++
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~v~~~-~~~~~~~~g~~~~ig----~~~ 149 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQR-RR-AP----RFLKAVKDI-AKKIEYADGKTFRFG----GTT 149 (298)
T ss_pred CccccccccccccchHHHhcCceecccCHHHHcCHHHH-hh-HH----hHHHHHHhc-CCceEECCCCEEEEC----CEE
Confidence 876542100 1236788877765211100 100000 00 00 001111111 122445667888885 899
Q ss_pred EEEE-eCCCCcC--ceEE----EEEeCCeEEEEEecCC-CCCccccCcccccCC--CCCcEEeeccc--cccccCCChhh
Q 005253 146 VAPH-VAGHLLG--GTVW----KITKDGEDVIYAVDYN-RRKEKHLNGTVLESF--VRPAVLITDAY--NALHNQPPRQQ 213 (706)
Q Consensus 146 it~~-~aGH~lG--s~~~----~I~~~~~~IlytGD~~-~~~~~~L~~~~l~~l--~~~d~LI~est--~~~~~~~~r~~ 213 (706)
|++. +..|... +.+| +|+.++.+++|+||+. ...+... +.+ ..+|+||++++ |....+.....
T Consensus 150 V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~-----~~l~~~d~dlLi~~~~p~~lk~~ri~~~~ 224 (298)
T PRK04286 150 IEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAV-----EFILEKKPDVVIIGGPPTYLLGRRLSEED 224 (298)
T ss_pred EEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHH-----HHHhcCCCCEEEeCCcchhhhhhhhcccc
Confidence 9966 6688532 4444 5567889999999998 3222211 112 37899999984 32212211111
Q ss_pred HHHHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHHhcCC-CccEE
Q 005253 214 REMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIY 262 (706)
Q Consensus 214 ~~~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~~~~l-~~pI~ 262 (706)
-..-.+.+.++.+.+-+-++-+.-+.+-...-.++.+.|...+- .+.|+
T Consensus 225 ~h~s~~~~~~l~~~~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~ 274 (298)
T PRK04286 225 LEKGIENLEEIVKNTPETLILDHHLLRDKNYREKLKELYERAEDRGVRVL 274 (298)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEE
Confidence 11223444444444444455442222323344444444443221 34555
No 24
>PRK02126 ribonuclease Z; Provisional
Probab=99.46 E-value=5.9e-13 Score=143.34 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=113.6
Q ss_pred eEEEEEeecCCCCCCeEEEEEEC--CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc-C-
Q 005253 4 SVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-G- 79 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~-g- 79 (706)
+++.+...| ...-|||+|..+ +..+|||||. ...+. .....+|++|||||.|.||++|++.|.... +
T Consensus 4 ~~~~~~~~g--~~~dn~~~l~~~~~~~~iLiD~G~-----~~~l~--~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r 74 (334)
T PRK02126 4 LLEPRLVNG--PFDDPGLYVDFLFERRALLFDLGD-----LHHLP--PRELLRISHIFVSHTHMDHFIGFDRLLRHCLGR 74 (334)
T ss_pred cceeEEecC--CCCCcEEEEEECCCCeEEEEcCCC-----HHHHh--hcCCCccCEEEEcCCChhHhCcHHHHHHHhccC
Confidence 344444433 237889999874 7899999995 11111 234578999999999999999999998643 1
Q ss_pred -CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHH-------H-------hhc----ccEEecCCCEEEeccc
Q 005253 80 -LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID-------S-------AFQ----SVTRLTYSQNYHLSGK 140 (706)
Q Consensus 80 -~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~-------~-------~~~----~i~~v~y~q~~~l~~~ 140 (706)
...+||++..+..+.+..+. .|.........+.|....+. . .+. .......+..+..
T Consensus 75 ~~~l~iygp~~~~~~l~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 150 (334)
T PRK02126 75 PRRLRLFGPPGFADQVEHKLA-GYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE--- 150 (334)
T ss_pred CCCeEEEECHHHHHHHHHHhc-cccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC---
Confidence 24689999999886654432 11000000000111110000 0 000 0001111222333
Q ss_pred CCCEEEEEEeCCCCcCceEEEEEe--------------------------------------------------------
Q 005253 141 GEGIVVAPHVAGHLLGGTVWKITK-------------------------------------------------------- 164 (706)
Q Consensus 141 ~~gl~it~~~aGH~lGs~~~~I~~-------------------------------------------------------- 164 (706)
++++|++++.-|...+.+|+|+.
T Consensus 151 -~~~~V~a~~~~H~vp~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~ 229 (334)
T PRK02126 151 -PWFRVRAAFLDHGIPCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPL 229 (334)
T ss_pred -CCEEEEEEEccCCCceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecH
Confidence 58999999999999999999983
Q ss_pred -----------CCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccc
Q 005253 165 -----------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 165 -----------~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~ 206 (706)
.+.+|+|+||+...++.. .........+|+||+|++|...
T Consensus 230 ~~~~~~~~~~~~g~~v~y~gDT~~~~~~~--~~l~~~a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 230 GELKERVLRIEPGQKIGYVTDIGYTEENL--ARIVELAAGVDLLFIEAVFLDE 280 (334)
T ss_pred HHHHHHhccCCCCCEEEEECCCCCCcccH--HHHHHHHcCCCEEEEEcccChH
Confidence 245899999999876421 0011123578999999998753
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.40 E-value=1.3e-11 Score=136.53 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=91.8
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..|||||.. +..+|||||..... ...+..+. ..+.+||+|++||.|.||+||++.+.+.++ .++||++..+..+.
T Consensus 32 ~~NsyLI~~-~~~vLIDtg~~~~~-~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~l 108 (394)
T PRK11921 32 SYNSYLIKD-EKTVLIDTVWQPFA-KEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKSL 108 (394)
T ss_pred EEEEEEEeC-CCEEEEeCCCCCcH-HHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHHH
Confidence 678999974 57899999974321 22222221 234589999999999999999999987644 68999998775532
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CC-CCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AG-HLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aG-H~lGs~~~~I~~~~~~Ilyt 172 (706)
. ..+. .. ..+..++.++.+.++ +.++++++ +| |++|++++.+ +..+++||
T Consensus 109 ~----~~~~-----~~-------------~~~~~v~~g~~l~lG----~~~l~~i~tP~~H~p~~~~~y~--~~~~vLFs 160 (394)
T PRK11921 109 K----GHYH-----QD-------------WNFVVVKTGDRLEIG----SNELIFIEAPMLHWPDSMFTYL--TGDNILFS 160 (394)
T ss_pred H----HHhC-----CC-------------CceEEeCCCCEEeeC----CeEEEEEeCCCCCCCCceEEEE--cCCCEEEe
Confidence 2 1100 00 124667889999996 77888775 34 9999988887 56789999
Q ss_pred ecC
Q 005253 173 VDY 175 (706)
Q Consensus 173 GD~ 175 (706)
||.
T Consensus 161 gD~ 163 (394)
T PRK11921 161 NDA 163 (394)
T ss_pred cCc
Confidence 996
No 26
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.36 E-value=2e-12 Score=126.20 Aligned_cols=188 Identities=20% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCC-ccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLL-QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l-~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
+.+||+|+.++..||||||+......... ........+|++||+||+|.||+||++++.+..+ ...+++.........
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~ 83 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIR 83 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccc-eeeeecccccccccc
Confidence 67999999999999999998643211111 2234556799999999999999999999998643 223333332222211
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecC
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
....... .... .............+..... ....+. ...+|..+++.+.+..++++++|+||+
T Consensus 84 ~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~vlftGD~ 146 (194)
T PF00753_consen 84 PPDRDSA-SRRG------------PAVPPPPIIDEDEDDLEIG---GDRILF-IIPGPGHGSDSLIIYLPGGKVLFTGDL 146 (194)
T ss_dssp HHHHHHH-HHHH------------HHHESEEEEEETTTEEEEE---TTEEEE-EEESSSSSTTEEEEEETTTTEEEEETT
T ss_pred ccccccc-cccc------------cccccccceeeeccccccc---cccccc-ceeccccCCcceEEEeCCCcEEEeeeE
Confidence 1111110 0000 0001112223333444443 233332 233444455566666689999999999
Q ss_pred CCCCccccCcccccCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCCeEEEee
Q 005253 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 235 (706)
Q Consensus 176 ~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~ 235 (706)
......... ..+ ... ...............+.+.+..+....+++|.
T Consensus 147 ~~~~~~~~~--------~~~----~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 147 LFSNEHPNP--------DPD----LPL-RGADVRYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp SCTTTSSSS--------STS----HTT-TTHTTSHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred eccCCcccc--------ccc----ccc-ccccccCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 876543211 111 000 00000011222356677777777788888873
No 27
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.36 E-value=3.1e-13 Score=142.97 Aligned_cols=225 Identities=20% Similarity=0.243 Sum_probs=122.8
Q ss_pred eEEEEEeecCCC-----CCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc
Q 005253 4 SVQVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (706)
Q Consensus 4 ~m~~t~LgGa~~-----~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~ 78 (706)
+|++++||-++. ...++++|+.++..+|||||... ...+......+.+|++|||||.|.||+.|||.|+...
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt---~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~ 77 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGT---QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSR 77 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhH---HHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHh
Confidence 378888875554 26778999999999999999532 2233334444568999999999999999999776532
Q ss_pred CC---C--CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHH-Hhh--------cccEEecCCCEEEe-cccC--
Q 005253 79 GL---S--APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID-SAF--------QSVTRLTYSQNYHL-SGKG-- 141 (706)
Q Consensus 79 g~---~--~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~-~~~--------~~i~~v~y~q~~~l-~~~~-- 141 (706)
.+ . ..||......++....+.-... ...++.+. .++. ..+ ..+..+.|.-.... .+..
T Consensus 78 ~~~~~~~~l~iygP~g~~~~~~~~~~~~~~----~~~~~i~~-~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~ 152 (292)
T COG1234 78 SFRGRREPLKIYGPPGIKEFVETSLRLSYS----KLTYEIIG-HEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDA 152 (292)
T ss_pred hccCCCCceeEECCcchhhhhhhhhhhccc----ccceEEEE-EEeccCceEEEEEecCCCccccceeeecCCCcCcCCH
Confidence 22 2 4678776555433222211000 00000000 0000 000 00111111111100 0000
Q ss_pred -------CCEEEEEEeCCCC----cCceEEEEEe--CCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccC
Q 005253 142 -------EGIVVAPHVAGHL----LGGTVWKITK--DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 208 (706)
Q Consensus 142 -------~gl~it~~~aGH~----lGs~~~~I~~--~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~ 208 (706)
++..++++..||+ .-...+++.. .+.+|+|+||+....+.. ....++|+||+|+++.....
T Consensus 153 ~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~------~~a~~aDlLiHEat~~~~~~ 226 (292)
T COG1234 153 EKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELI------DLAKGADLLIHEATFEDDLE 226 (292)
T ss_pred HHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHH------HHhcCCCEEEEeccCCchhh
Confidence 2678888889998 4444455544 347999999999886421 12367999999999876432
Q ss_pred CChhhH-H-HHHHHHHHHHhcCCeEEEeecCchhHH
Q 005253 209 PPRQQR-E-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (706)
Q Consensus 209 ~~r~~~-~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ 242 (706)
...... . ...+...-+-+.|-+-||.+.-+.|..
T Consensus 227 ~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~ 262 (292)
T COG1234 227 DLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYP 262 (292)
T ss_pred hHHhhcCCCCHHHHHHHHHHcCCCeEEEEeeccccc
Confidence 110000 1 122223323344555666666555653
No 28
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.28 E-value=2.4e-11 Score=129.73 Aligned_cols=134 Identities=17% Similarity=0.150 Sum_probs=93.5
Q ss_pred CCeEEEEEeecCCCCCCeEEEEEEC--CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 2 GTSVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 2 ~~~m~~t~LgGa~~~g~sc~LL~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
++.|+++++-... ...||+|..+ +..++||+|.. ...+..+.....+|++||+||.|.||+||+..|.+.+
T Consensus 73 ~~~~~i~~ip~l~--dNy~Yli~d~~t~~~~vVDP~~a----~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~- 145 (329)
T PLN02398 73 SSSLQIELVPCLK--DNYAYLLHDEDTGTVGVVDPSEA----VPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY- 145 (329)
T ss_pred CCCcEEEEEeeeC--ceEEEEEEECCCCEEEEEcCCCH----HHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-
Confidence 3456777663322 3469999764 46899999842 2233334444568999999999999999999998865
Q ss_pred CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCce
Q 005253 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGT 158 (706)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~ 158 (706)
.++||++.......+ ..-..+..++.+.++ +.+++.+. +||++|+.
T Consensus 146 -ga~V~g~~~~~~~i~----------------------------~~d~~v~dGd~i~lg----g~~l~vi~tPGHT~GhI 192 (329)
T PLN02398 146 -GAKVIGSAVDKDRIP----------------------------GIDIVLKDGDKWMFA----GHEVLVMETPGHTRGHI 192 (329)
T ss_pred -CCEEEEehHHhhhcc----------------------------CCcEEeCCCCEEEEC----CeEEEEEeCCCcCCCCE
Confidence 489999865332100 011456778888885 66666654 79999999
Q ss_pred EEEEEeCCeEEEEEecCCC
Q 005253 159 VWKITKDGEDVIYAVDYNR 177 (706)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~ 177 (706)
+|.+ ++.+++|+||+-.
T Consensus 193 ~~~~--~~~~vLFtGDtLf 209 (329)
T PLN02398 193 SFYF--PGSGAIFTGDTLF 209 (329)
T ss_pred EEEE--CCCCEEEECCCcC
Confidence 9977 3457999999854
No 29
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.27 E-value=2e-11 Score=127.06 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=84.9
Q ss_pred eEEEEEEC--CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 19 LSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 19 sc~LL~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
.||||..+ +..+|||+|.. ...+..+......|++||+||.|.||+||+..|.+.++ .++||++.....
T Consensus 13 y~Yli~d~~~~~~vlIDp~~~----~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~~~---- 83 (258)
T PLN02469 13 YAYLIIDESTKDAAVVDPVDP----EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLDNV---- 83 (258)
T ss_pred EEEEEEeCCCCeEEEECCCCh----HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechhcC----
Confidence 49999765 37999999932 12233333334579999999999999999999988653 589998643200
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeC--CeEEEEEe
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKD--GEDVIYAV 173 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~--~~~IlytG 173 (706)
+ .....+..++.+.++ .++.++.+. +||++|+++|.+... ..+++|||
T Consensus 84 ---------------~-----------~~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtG 134 (258)
T PLN02469 84 ---------------K-----------GCTHPVENGDKLSLG---KDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTG 134 (258)
T ss_pred ---------------C-----------CCCeEeCCCCEEEEC---CceEEEEEECCCCCCCCEEEEeccCCCCCCEEEec
Confidence 0 001356778888885 345565554 899999999988642 35699999
Q ss_pred cCCC
Q 005253 174 DYNR 177 (706)
Q Consensus 174 D~~~ 177 (706)
|+-.
T Consensus 135 DtLf 138 (258)
T PLN02469 135 DTLF 138 (258)
T ss_pred Cccc
Confidence 9744
No 30
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.27 E-value=1.1e-10 Score=126.36 Aligned_cols=195 Identities=13% Similarity=0.087 Sum_probs=116.5
Q ss_pred CeEEEEEeecCCCCCCeEEEEEE-CCeEEEEeCCCCCCCC-------------------ccCCcc-cc--------CCCC
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSI-DGFNFLIDCGWNDHFD-------------------PSLLQP-LS--------KVAS 53 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~-~~~~ILiDcG~~~~~~-------------------~~~l~~-l~--------~~~~ 53 (706)
+.++++.| |.++++|+. ++.+||+|. |..... ...+++ +. ...+
T Consensus 36 ~~~~~~wl------G~a~~li~~~~g~~ILiD~-~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~ 108 (355)
T PRK11709 36 GTFAMWWL------GCTGIWLKTEGGTNVCVDL-WCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIR 108 (355)
T ss_pred CcEEEEEe------cceEEEEEcCCCcEEEEee-cCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCC
Confidence 34777777 678899998 588999993 221100 001111 11 1346
Q ss_pred CccEEEcCCCchhhhc--cHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecC
Q 005253 54 TIDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTY 131 (706)
Q Consensus 54 ~IdaIlLTH~H~DHiG--gLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y 131 (706)
.||+|||||.|.||+. .+..+.++.+..++++++..+..+.+ ... .+ ..++..++.
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~--------~~G----vp----------~~rv~~v~~ 166 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWI--------GWG----VP----------KERCIVVKP 166 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHH--------hcC----CC----------cceEEEecC
Confidence 8999999999999994 44555543333466777666543211 100 00 136788999
Q ss_pred CCEEEecccCCCEEEEEEeCCC-----------Cc-----------CceEEEEEeCCeEEEEEecCCCCCccccCccccc
Q 005253 132 SQNYHLSGKGEGIVVAPHVAGH-----------LL-----------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 189 (706)
Q Consensus 132 ~q~~~l~~~~~gl~it~~~aGH-----------~l-----------Gs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~ 189 (706)
++.+.++ +++|+++++-| .. .+++|+|+.++.+|+|+||+.+.+.. . .+.
T Consensus 167 Ge~i~ig----~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~--~--~i~ 238 (355)
T PRK11709 167 GDVVKVK----DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYF--A--KHG 238 (355)
T ss_pred CCcEEEC----CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHH--H--HHH
Confidence 9999995 89999998843 21 24789999999999999999876421 0 011
Q ss_pred CCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCCeEEEeecC
Q 005253 190 SFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDS 237 (706)
Q Consensus 190 ~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~~~ 237 (706)
...++|++++...........+-.. .+.++-+-.-+.+++||+.-
T Consensus 239 ~~~~iDvall~iG~~p~~~~~hm~p---~ea~~~a~~l~ak~vIpiH~ 283 (355)
T PRK11709 239 NDHQIDVALGSYGENPRGITDKMTS---IDILRMAESLNAKVVIPVHH 283 (355)
T ss_pred hcCCCCEEEecCCCCCCCCcCCCCH---HHHHHHHHHcCCCEEEEECh
Confidence 1125898887543211000111111 12333333356778998875
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.24 E-value=1.5e-11 Score=138.91 Aligned_cols=130 Identities=20% Similarity=0.241 Sum_probs=92.4
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..|||||. ++..+|||+|... +....+..+. ..+.+|++|++||.|.||+|+++.|.++++ +++||++..+..+.
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~-~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~l 110 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHK-FSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDSI 110 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcc-cHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHHH
Confidence 67999998 5688999999532 1122222322 234689999999999999999999987643 78999998876532
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC--CCCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~lGs~~~~I~~~~~~Ilyt 172 (706)
. ..+ .. + ...+..++.++.+.++ ++.+++++++ +|++|++++.+ +..+++||
T Consensus 111 ~----~~~----~~---~----------~~~~~~v~~G~~l~lG---~~~~l~~i~tP~~H~pgs~~~y~--~~~~vLFs 164 (479)
T PRK05452 111 N----GHH----HH---P----------EWNFNVVKTGDTLDIG---NGKQLIFVETPMLHWPDSMMTYL--TGDAVLFS 164 (479)
T ss_pred H----Hhh----cC---C----------cCeEEEeCCCCEEecC---CCcEEEEEECCCCCCCCceEEEE--cCCCEEEe
Confidence 1 100 00 0 0135678899999996 3566666653 59999998887 56789999
Q ss_pred ecC
Q 005253 173 VDY 175 (706)
Q Consensus 173 GD~ 175 (706)
||.
T Consensus 165 gD~ 167 (479)
T PRK05452 165 NDA 167 (479)
T ss_pred ccc
Confidence 996
No 32
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.24 E-value=4.8e-11 Score=123.43 Aligned_cols=136 Identities=11% Similarity=0.066 Sum_probs=90.9
Q ss_pred CeEEEEEeecCCCCCCeEEEEEE----CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSI----DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~----~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~ 78 (706)
+.|-|.-+.. ...+.+||||.. ++..+|||+|.... ...+..+.....+|.+||+||.|.||+||++.|.+++
T Consensus 9 ~~m~~~~~~~-~~~~~~~Yll~d~~~~~~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~ 85 (251)
T PLN02962 9 SKLLFRQLFE-KESSTYTYLLADVSHPDKPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKL 85 (251)
T ss_pred CceEEEEeec-CCceeEEEEEEeCCCCCCEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHC
Confidence 4566766632 223679999975 35799999984211 1122333333457889999999999999999998754
Q ss_pred CCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCc
Q 005253 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGG 157 (706)
Q Consensus 79 g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs 157 (706)
+ .+++|+..... + ..-..++.++.+.++ ++.++++. +||++|+
T Consensus 86 ~-~a~v~~~~~~~----------------------~---------~~d~~l~~g~~i~~g----~~~l~vi~tPGHT~g~ 129 (251)
T PLN02962 86 P-GVKSIISKASG----------------------S---------KADLFVEPGDKIYFG----DLYLEVRATPGHTAGC 129 (251)
T ss_pred C-CCeEEeccccC----------------------C---------CCCEEeCCCCEEEEC----CEEEEEEECCCCCcCc
Confidence 3 57888753210 0 001235667888885 66666654 8999999
Q ss_pred eEEEEEe----CCeEEEEEecCCC
Q 005253 158 TVWKITK----DGEDVIYAVDYNR 177 (706)
Q Consensus 158 ~~~~I~~----~~~~IlytGD~~~ 177 (706)
++|.+.. +..+++|+||+-.
T Consensus 130 v~~~~~d~~~~~~~~~lftGD~Lf 153 (251)
T PLN02962 130 VTYVTGEGPDQPQPRMAFTGDALL 153 (251)
T ss_pred EEEEeccCCCCCccceEEECCeec
Confidence 9998743 2357999999744
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.23 E-value=3.3e-11 Score=124.95 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=85.8
Q ss_pred CeEEEEEECC-eEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 18 PLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 18 ~sc~LL~~~~-~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
..+||+..++ ..+|||+|... ..+..+......+++||+||.|.||+||++.+.+.++ ++||++..+. +
T Consensus 10 N~~yli~~~~~~~ilID~g~~~----~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~--~~V~~~~~~~-~--- 79 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE----PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP--APVYGPAEER-I--- 79 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH----HHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC--CeEEeccccc-C---
Confidence 4668887765 89999999531 1222232233468999999999999999999987654 8899876430 0
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeEEEEEecC
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
+ .....+..++.+.++ +.+++++. +||++|+++|.+. ..+++|+||+
T Consensus 80 ---------------~-----------~~~~~v~~g~~~~~g----~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDt 127 (248)
T TIGR03413 80 ---------------P-----------GITHPVKDGDTVTLG----GLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDT 127 (248)
T ss_pred ---------------C-----------CCcEEeCCCCEEEEC----CEEEEEEECCCCCcccEEEEEC--CCCEEEEcCc
Confidence 0 012456778888885 66777665 7999999988884 4689999998
Q ss_pred CCC
Q 005253 176 NRR 178 (706)
Q Consensus 176 ~~~ 178 (706)
-..
T Consensus 128 l~~ 130 (248)
T TIGR03413 128 LFS 130 (248)
T ss_pred ccc
Confidence 543
No 34
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.22 E-value=1.7e-10 Score=119.31 Aligned_cols=221 Identities=12% Similarity=0.024 Sum_probs=128.0
Q ss_pred CCeEEEEEECCeEEEEe-CCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc--C---CC-CCeeecch
Q 005253 17 NPLSYLVSIDGFNFLID-CGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL--G---LS-APVFSTEP 89 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiD-cG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~--g---~~-~~VyaT~p 89 (706)
+.-...+-....+||+| .|-.. ...+......++.|||||+|.||+|||+.+.... . .+ ..||....
T Consensus 8 a~~~t~~~~~~~~ilfD~ag~g~------~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 8 AAFFSTIIYSPEEIIFDAAEEGS------STLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred hhheEEEEECchhheehhhcccc------hhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 34455666678899999 88532 1234445568999999999999999997655421 1 12 34898877
Q ss_pred hhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCc---CceEEEEEe--
Q 005253 90 VYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL---GGTVWKITK-- 164 (706)
Q Consensus 90 t~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~l---Gs~~~~I~~-- 164 (706)
+..+.+.++ +.+..... .....-...+++.++.+.+...+..+.|.+++..|+. -|.+|.|..
T Consensus 82 ~~~~ve~~~-~~~~~~~~-----------~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r 149 (277)
T TIGR02650 82 GNAAEEETS-EFIKAANE-----------DLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERR 149 (277)
T ss_pred hhHHHHHHH-HHHHHhhh-----------hhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEe
Confidence 666544221 12211111 1111112244555666666411124899999999995 355555541
Q ss_pred ------------------------------CCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhH
Q 005253 165 ------------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR 214 (706)
Q Consensus 165 ------------------------------~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~ 214 (706)
...+|+|+||+..... +...++|+||+|||+...... +..-
T Consensus 150 ~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~--------~~a~~adlLIhEaTf~d~~~~-~~~g 220 (277)
T TIGR02650 150 KKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD--------EEEEGGEELIHECCFFDDADD-RRKK 220 (277)
T ss_pred ecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh--------HHhcCCCEEEEeccccccccc-ccCC
Confidence 1257999999987642 224689999999999775332 1000
Q ss_pred H-HHHHHHHHHHh-cCCeEEEeecCchhHHHHH-HHHHHHHHhcCC-CccEEEEcc
Q 005253 215 E-MFQDAISKTLR-AGGNVLLPVDSAGRVLELL-LILEDYWAEHSL-NYPIYFLTY 266 (706)
Q Consensus 215 ~-~l~~~I~~tl~-~gG~VLIP~~~~GR~~ELl-~~L~~~~~~~~l-~~pI~~~s~ 266 (706)
. ...+.+..+-+ +...+++-.++.-|-.+++ .++... . ..+ .+||+++.+
T Consensus 221 H~t~~eaa~~A~~a~vk~LiLtH~Ssry~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 274 (277)
T TIGR02650 221 HAAADDEMEESKKAAGKKKIILHHISRRIIRILKSIIKKR-E-EEMDDEEILMDDP 274 (277)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecccccHHHHHHHHHHH-H-hhcCccceeccCC
Confidence 1 22333333333 4456667677666666665 444444 2 223 577876543
No 35
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.16 E-value=1.2e-10 Score=120.90 Aligned_cols=117 Identities=14% Similarity=0.225 Sum_probs=81.7
Q ss_pred CeEEEEEEC-CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 18 PLSYLVSID-GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 18 ~sc~LL~~~-~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
..+|++..+ +..+|||+|.. ...+..+.....++++||+||.|.||+||+..|.++++ .++||++......
T Consensus 12 Ny~~li~~~~~~~ilIDpg~~----~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~~~~--- 83 (251)
T PRK10241 12 NYIWVLNDEAGRCLIVDPGEA----EPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQETQDK--- 83 (251)
T ss_pred eEEEEEEcCCCcEEEECCCCh----HHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCC-CCEEEeccccccc---
Confidence 455777654 57899999953 12233333333467999999999999999999988754 6789986432110
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeEEEEEecC
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
.....+..++.+.++ +.+++++. +||++|+++|.. ..++||||+
T Consensus 84 ---------------------------~~~~~v~~g~~i~ig----~~~~~vi~tPGHT~ghi~~~~----~~~lFtGDt 128 (251)
T PRK10241 84 ---------------------------GTTQVVKDGETAFVL----GHEFSVFATPGHTLGHICYFS----KPYLFCGDT 128 (251)
T ss_pred ---------------------------CCceEeCCCCEEEeC----CcEEEEEEcCCCCccceeeec----CCcEEEcCe
Confidence 012345668888885 56666654 899999999964 358999997
Q ss_pred CC
Q 005253 176 NR 177 (706)
Q Consensus 176 ~~ 177 (706)
-.
T Consensus 129 lf 130 (251)
T PRK10241 129 LF 130 (251)
T ss_pred ec
Confidence 54
No 36
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.07 E-value=7.9e-10 Score=113.25 Aligned_cols=148 Identities=23% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCeEEEEEECC-eEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~-~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
..+++++..++ ..+|||||............+.....+|+.|++||.|.||+||+..+.+... ..++|.......+..
T Consensus 24 ~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~~~ 102 (252)
T COG0491 24 GNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLLLR 102 (252)
T ss_pred cccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhhhh
Confidence 44555665555 8999999986421111112222222289999999999999999999987533 366754444333211
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecC
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
...... .... ..... +. .......+..++.+.+++ .++++.+. +||++|+++|.+..++ ++|+||.
T Consensus 103 ~~~~~~-~~~~-~~~~~-~~------~~~~~~~~~~~~~~~~~~--~~~~~i~t-pGHT~g~~~~~~~~~~--~l~~gD~ 168 (252)
T COG0491 103 EEILRK-AGVT-AEAYA-AP------GASPLRALEDGDELDLGG--LELEVLHT-PGHTPGHIVFLLEDGG--VLFTGDT 168 (252)
T ss_pred cccccc-cccc-cccCC-CC------ccccceecCCCCEEEecC--eEEEEEEC-CCCCCCeEEEEECCcc--EEEecce
Confidence 110000 0000 00000 00 112233445677788752 23555555 4999999999996544 9999998
Q ss_pred CCCC
Q 005253 176 NRRK 179 (706)
Q Consensus 176 ~~~~ 179 (706)
-...
T Consensus 169 ~~~~ 172 (252)
T COG0491 169 LFAG 172 (252)
T ss_pred eccC
Confidence 6654
No 37
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=99.02 E-value=2.1e-09 Score=117.74 Aligned_cols=176 Identities=19% Similarity=0.171 Sum_probs=124.1
Q ss_pred CCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCC
Q 005253 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132 (706)
Q Consensus 53 ~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~ 132 (706)
....+-|+||+|.||-.||.--+. ++++||+.-|+.+....+. -.+..++.++-+
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~---------------------v~~~~i~~l~l~ 165 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS---------------------VTKQSIQALDLN 165 (481)
T ss_pred cccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc---------------------cChhhceeecCC
Confidence 467789999999999888765443 4569999999887654331 012456788889
Q ss_pred CEEEecccCCCEEEEEEeCCCCcCceEEEEEeCC-eEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccC--C
Q 005253 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ--P 209 (706)
Q Consensus 133 q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~-~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~--~ 209 (706)
+++.+. ++.++.++|.|+||+++|.++... ..++|||||+..++..-.++.. ....++.+..|+||..... |
T Consensus 166 ~~~~i~----~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~-~~~~i~~lyLDtTycnp~y~Fp 240 (481)
T KOG1361|consen 166 QPLEIP----GIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALT-LEQTIDILYLDTTYCNPKYDFP 240 (481)
T ss_pred Cceeec----ceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHh-cCCccceEEEeecccCCCCCCc
Confidence 999995 899999999999999999998854 5999999999987653333211 1246899999999998654 4
Q ss_pred ChhhHH-HHHHHHHHHHhcCCe--EEEeecCchhHHHHHHHHHHHHHhcCCCccEEEE
Q 005253 210 PRQQRE-MFQDAISKTLRAGGN--VLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264 (706)
Q Consensus 210 ~r~~~~-~l~~~I~~tl~~gG~--VLIP~~~~GR~~ELl~~L~~~~~~~~l~~pI~~~ 264 (706)
++.+.. ...+.|..-...+-. ++|+++++|+--=++.+...+ +.+|++.
T Consensus 241 sq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l------~~kI~v~ 292 (481)
T KOG1361|consen 241 SQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARIL------NSKIWVE 292 (481)
T ss_pred cHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHh------CCceEEe
Confidence 444443 555555554444323 667999999843333333333 6788865
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.00 E-value=4.9e-09 Score=101.56 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=91.0
Q ss_pred EEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCee
Q 005253 6 QVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF 85 (706)
Q Consensus 6 ~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~Vy 85 (706)
++|.| |.+|++++.++.+||+|+.... ........++|+||+||.|.||+.. +.+. .+
T Consensus 1 ~It~l------gha~~~ie~~g~~iliDP~~~~-------~~~~~~~~~~D~IlisH~H~DH~~~-~~l~-------~~- 58 (163)
T PF13483_consen 1 KITWL------GHASFLIETGGKRILIDPWFSS-------VGYAPPPPKADAILISHSHPDHFDP-ETLK-------RL- 58 (163)
T ss_dssp EEEEE------ETTEEEEEETTEEEEES--TTT---------T-TSS-B-SEEEESSSSTTT-CC-CCCC-------CH-
T ss_pred CEEEE------EeeEEEEEECCEEEEECCCCCc-------cCcccccCCCCEEEECCCccccCCh-hHhh-------hc-
Confidence 46666 5899999999999999998431 0111223689999999999999953 1000 00
Q ss_pred ecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC-------cCce
Q 005253 86 STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-------LGGT 158 (706)
Q Consensus 86 aT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~-------lGs~ 158 (706)
..++..+..++.++++ +++|+.+++-|. ...+
T Consensus 59 -------------------------------------~~~~~vv~~~~~~~~~----~~~i~~v~~~~~~~~~~~~~~~~ 97 (163)
T PF13483_consen 59 -------------------------------------DRDIHVVAPGGEYRFG----GFKITAVPAYHDGPGGHPRGENV 97 (163)
T ss_dssp -------------------------------------HTSSEEE-TTEEEECT----TEEEEEEEEEE-STGTS-TTCCE
T ss_pred -------------------------------------ccccEEEccceEEEEe----eeEEEEEeeeccccCCCCcCCeE
Confidence 1345667778888885 899998887663 2378
Q ss_pred EEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCCeEEEeec
Q 005253 159 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236 (706)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~~ 236 (706)
+|.++.++.+|+|+||.....+. ..+..+.++|++++-..... ..... +..+.+. +-+.+++||+.
T Consensus 98 ~~~i~~~g~~i~~~Gd~~~~~~~----~~~~~~~~vDvl~~p~~g~~----~~~~~-~a~~~~~---~l~pk~viP~H 163 (163)
T PF13483_consen 98 GYLIEVGGVTIYHAGDTGFPPDD----EQLKQLGKVDVLFLPVGGPF----TMGPE-EAAELAE---RLKPKLVIPMH 163 (163)
T ss_dssp EEEEEETTEEEEE-TT--S---H----HHHHHH-S-SEEEEE--TTT----S--HH-HHHHHHH---HCT-SEEEEES
T ss_pred EEEEEeCCCEEEEECCCccCCCH----HHHhcccCCCEEEecCCCCc----ccCHH-HHHHHHH---HcCCCEEEeCC
Confidence 99999999999999999864321 22334568999998875411 11111 2333333 24677899973
No 39
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.96 E-value=8.5e-10 Score=111.42 Aligned_cols=76 Identities=29% Similarity=0.403 Sum_probs=62.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
-+-|+||+.++.+||+|+|++...=..++..++.++.+||+|+|||.|.||+|||+++.+......|||+++....
T Consensus 21 hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 21 HGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4778999999999999999865332345667788889999999999999999999999885445789999876654
No 40
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=103.53 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=88.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcc-cc---CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LS---KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~-l~---~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
..++|||..+..+++.|.|-.. .++.+.. +. .....+.+||.||.|.||+||+.-|.+.+.+++.+|...+..
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vDP~--~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r- 88 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVDPA--EPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDR- 88 (265)
T ss_pred CceEEEEecccceeeeeeecCc--chHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhc-
Confidence 5789999987788777777421 2222211 12 256789999999999999999999988644466677653110
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEE-eCCeEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKIT-KDGEDVI 170 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~-~~~~~Il 170 (706)
.. .--..++.++.+.+. |++|+.+. +||+-|+.+|.+. ..+++.+
T Consensus 89 ~~-----------------------------~i~~~~~~~e~~~~~----g~~v~~l~TPgHT~~hi~~~~~~~~~e~~i 135 (265)
T KOG0813|consen 89 IP-----------------------------GITRGLKDGETVTVG----GLEVRCLHTPGHTAGHICYYVTESTGERAI 135 (265)
T ss_pred Cc-----------------------------cccccCCCCcEEEEC----CEEEEEEeCCCccCCcEEEEeecCCCCCeE
Confidence 00 001236778999995 89998875 8999999999997 4678899
Q ss_pred EEecCCC
Q 005253 171 YAVDYNR 177 (706)
Q Consensus 171 ytGD~~~ 177 (706)
|+||.-.
T Consensus 136 FtGDtlf 142 (265)
T KOG0813|consen 136 FTGDTLF 142 (265)
T ss_pred EeCCcee
Confidence 9999744
No 41
>PRK11539 ComEC family competence protein; Provisional
Probab=98.80 E-value=3.2e-08 Score=118.19 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=101.3
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCC-CC--cc-CCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCC
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDH-FD--PS-LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~-~~--~~-~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~ 80 (706)
.+++.|--+ .|.|.+++.+++++|+|||...+ .+ .. .+..+....-++|+|++||.|.||+||++.+.++++
T Consensus 501 ~~v~~lDVG---qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~- 576 (755)
T PRK11539 501 WRVDMLDVG---HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP- 576 (755)
T ss_pred EEEEEEEcc---CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCC-
Confidence 567776322 46788999999999999996321 11 11 112232222259999999999999999999988654
Q ss_pred CCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCC-----
Q 005253 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHL----- 154 (706)
Q Consensus 81 ~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~----- 154 (706)
..+||.+.... ...++..++.+.++ +++++.+. .+|.
T Consensus 577 ~~~i~~~~~~~---------------------------------~~~~~~~g~~~~~~----~~~~~vL~P~~~~~~~~N 619 (755)
T PRK11539 577 MAWIRSPLNWA---------------------------------NHLPCVRGEQWQWQ----GLTFSVHWPLEQSNDAGN 619 (755)
T ss_pred cceeeccCccc---------------------------------CcccccCCCeEeEC----CEEEEEEecCcccCCCCC
Confidence 45677543110 00112346777774 78887764 3443
Q ss_pred cCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccc
Q 005253 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (706)
Q Consensus 155 lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est 202 (706)
.+||.++++.++.++++|||.....++.|-... ....++|+|..-..
T Consensus 620 ~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~-~~~l~~dvL~vpHH 666 (755)
T PRK11539 620 NDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRY-WQQLAATLLQVPHH 666 (755)
T ss_pred CccEEEEEEECCEEEEEEeCCChHHHHHHHhcC-ccCcCCCEEEeCCC
Confidence 468999999999999999999877655332110 11235787777654
No 42
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.79 E-value=1.4e-08 Score=109.05 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=97.6
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhh
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l 93 (706)
.+-|+||+. +++.+|||++-.. +....+..+. .++.+||.|+++|...||+|+++.+++..+ +++|+||.+...+
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~-~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~ 110 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEK-FFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARF 110 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcc-hHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHH
Confidence 478999999 9999999998543 3233333332 356789999999999999999999998655 8999999988877
Q ss_pred chhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEEeCCeEEEE
Q 005253 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIY 171 (706)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~~~~~~Ily 171 (706)
.+.+..+. ..+..++.|+.+.++ |-+++++ |.=|.||+...+. ...+|+|
T Consensus 111 L~~~~~~~----------------------~~~~ivk~Gd~ldlG----g~tL~Fi~ap~LHWPd~m~TYd--~~~kILF 162 (388)
T COG0426 111 LKGFYHDP----------------------EWFKIVKTGDTLDLG----GHTLKFIPAPFLHWPDTMFTYD--PEDKILF 162 (388)
T ss_pred HHHhcCCc----------------------cceeecCCCCEeccC----CcEEEEEeCCCCCCCCceeEee--cCCcEEE
Confidence 65432111 116778999999996 5555555 4579999755444 5678999
Q ss_pred EecCCC
Q 005253 172 AVDYNR 177 (706)
Q Consensus 172 tGD~~~ 177 (706)
|+|+.-
T Consensus 163 S~D~fG 168 (388)
T COG0426 163 SCDAFG 168 (388)
T ss_pred cccccc
Confidence 999764
No 43
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.79 E-value=5e-08 Score=115.05 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=101.8
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCC-Cc--c-CCccccC-CCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-DP--S-LLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~-~~--~-~l~~l~~-~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
.+++.+-= + .|.|++++.+++.+|||||..... +. . .+..+.. ... +|++++||.|.||+||++.+.++++
T Consensus 440 ~~v~~lDV-G--qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 440 WQVDMLDV-G--QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred EEEEEEec-C--CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCC
Confidence 46666621 1 477999999999999999953211 10 1 1122222 234 9999999999999999999988643
Q ss_pred CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCC------
Q 005253 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH------ 153 (706)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH------ 153 (706)
..+||.+.... .. . .....+..++.+.++ +++++++.+..
T Consensus 516 -v~~i~~~~~~~------------~~----~-------------~~~~~~~~G~~~~~~----~~~~~vL~P~~~~~~~~ 561 (662)
T TIGR00361 516 -VKRLVIPKGFV------------EE----G-------------VAIEECKRGDVWQWQ----GLQFHVLSPEAPDPASK 561 (662)
T ss_pred -ccEEEeccchh------------hC----C-------------CceEecCCCCEEeEC----CEEEEEECCCCccCCCC
Confidence 23555432200 00 0 122345677888874 78888886542
Q ss_pred CcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccc
Q 005253 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (706)
Q Consensus 154 ~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est 202 (706)
.-.|+.++++.++.++++|||.....+..+... . ...+.|+|.....
T Consensus 562 N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~-~-~~l~~dvLk~~HH 608 (662)
T TIGR00361 562 NNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRV-F-PNIKADVLQVGHH 608 (662)
T ss_pred CCCceEEEEEECCeeEEEecCCCHHHHHHHHhc-c-cCcCccEEEeCCC
Confidence 235789999999999999999988765433211 1 1235678877554
No 44
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=99.53 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=119.7
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc-CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
++.+.+++.++.++|+|+|...+ ....+..|. ....+||.+++||+|.||+||++.+.+++. -..+|+..+...-..
T Consensus 53 qg~a~li~~~~~~~l~dtg~~~~-~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~-v~~~~i~~~~~~~~~ 130 (293)
T COG2333 53 QGLATLIRSEGKTILYDTGNSMG-QDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK-VPELWIYAGSDSTST 130 (293)
T ss_pred CCeEEEEeeCCceEEeecCcccC-ceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC-CCcEEEeCCCCccch
Confidence 56788999999999999997422 122233333 235689999999999999999999998543 234554433322110
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCC-----cCceEEEEEeCCeEE
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHL-----LGGTVWKITKDGEDV 169 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~-----lGs~~~~I~~~~~~I 169 (706)
..+.+ .-..+...+-++.+.+. ++.++++. .+.. --||..+++.++.++
T Consensus 131 ~~~~~---------------------~~~~~~~~~~G~~~~~~----~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~ 185 (293)
T COG2333 131 FVLRD---------------------AGIPVRSCKAGDSWQWG----GVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSF 185 (293)
T ss_pred hhhhh---------------------cCCceeccccCceEEEC----CeEEEEEcCCccccccccCcceEEEEEeCCeeE
Confidence 00111 11234456668888885 88888764 3343 247899999999999
Q ss_pred EEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCCeEEEeecCchh-------HH
Q 005253 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR-------VL 242 (706)
Q Consensus 170 lytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~~~~GR-------~~ 242 (706)
++|||.....+..+... .+. .++|+|........... ...|++.++ ..+ +..++|| -+
T Consensus 186 LlTGD~e~~~E~~l~~~-~~~-l~~dVLkV~HHGS~tSs-----s~~Fl~~v~------Pk~--AliS~G~~N~yghPh~ 250 (293)
T COG2333 186 LLTGDLEEKGEKLLKKY-GPD-LRADVLKVGHHGSKTSS-----SLAFLEAVK------PKV--ALISSGRNNRYGHPHQ 250 (293)
T ss_pred EEecCCCchhHHHHHhh-CCC-ccceEEEeccCCccccC-----cHHHHHhcC------CcE--EEEEeeccCCCCCCcH
Confidence 99999998877443322 223 45778877654332211 124555542 222 4455565 46
Q ss_pred HHHHHHHHH
Q 005253 243 ELLLILEDY 251 (706)
Q Consensus 243 ELl~~L~~~ 251 (706)
+.+..|.+.
T Consensus 251 ~Vl~rl~~~ 259 (293)
T COG2333 251 EVLERLQKR 259 (293)
T ss_pred HHHHHHHhc
Confidence 666666654
No 45
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.76 E-value=3.5e-09 Score=119.37 Aligned_cols=187 Identities=16% Similarity=0.119 Sum_probs=104.7
Q ss_pred eEEEEEeecCCCC-----CCeEEEEEECCeE-EEEeCCCCCCCC--ccC-CccccCCCCCccEEEcCCCchhhhccHHHH
Q 005253 4 SVQVTPLSGVFNE-----NPLSYLVSIDGFN-FLIDCGWNDHFD--PSL-LQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (706)
Q Consensus 4 ~m~~t~LgGa~~~-----g~sc~LL~~~~~~-ILiDcG~~~~~~--~~~-l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L 74 (706)
.+.+..||-+... .-++++++++... ||+|||-+.-.. +.+ .........++.+|+|||.|.||.-|++.+
T Consensus 442 ~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~v 521 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISV 521 (746)
T ss_pred CcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHH
Confidence 4678888544332 4567999997655 999999642110 001 111222346789999999999999999988
Q ss_pred HHhcC------CCCCeeecchhhhhchhhhHHHHHhhhccCCCC--CCCHHhHH-HhhcccEE--ec---CCCEEEeccc
Q 005253 75 MKQLG------LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDID-SAFQSVTR--LT---YSQNYHLSGK 140 (706)
Q Consensus 75 ~~~~g------~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~--~~~~~dv~-~~~~~i~~--v~---y~q~~~l~~~ 140 (706)
++.+. -.-|++...|- .+..++........++ .+..-... ..|....+ +. .++.+ ..
T Consensus 522 L~~r~k~~k~~~~~pl~vv~P~------ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l---~~ 592 (746)
T KOG2121|consen 522 LQARTKLLKGVENSPLLVVAPR------QLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLL---RE 592 (746)
T ss_pred HHHHHHhccccccCceEEeChH------HHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHH---Hh
Confidence 76421 12345544432 2222211111000000 00000000 00000000 00 00111 11
Q ss_pred CCCEEEEEEeCCCCcCceEEEEEeC-CeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccc
Q 005253 141 GEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 141 ~~gl~it~~~aGH~lGs~~~~I~~~-~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
.+...|...++-|++-+++..|... +.+|+|+||+...++.. ..-...|+||.|||.-.
T Consensus 593 ~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v------~~g~datlLIHEAT~ED 652 (746)
T KOG2121|consen 593 LGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLV------KAGKDATLLIHEATLED 652 (746)
T ss_pred cCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHh------hhccCCceEEeehhhch
Confidence 2467777788999999999999885 48999999999866421 11246899999999765
No 46
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.71 E-value=1.9e-07 Score=97.60 Aligned_cols=164 Identities=21% Similarity=0.152 Sum_probs=102.8
Q ss_pred CCeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCc--cccCCCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQ--PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 2 ~~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~--~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
...|++|-| |.+|++|+.++.+||+|+.+.......... ......+.+|+|+|||.|.||++.--......+
T Consensus 4 ~~~m~itwl------Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~ 77 (258)
T COG2220 4 AEDMKITWL------GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN 77 (258)
T ss_pred CcCceEEEe------cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC
Confidence 357999988 689999999999999999987543221110 112335689999999999999975443332112
Q ss_pred CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCC-----
Q 005253 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL----- 154 (706)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~----- 154 (706)
..+++....... ..+. .+... ..++..+.+++.+.+. ++++++.++-|.
T Consensus 78 -~~~~~~~p~~~~-------~~~~-~~g~~-------------~~~~~~~~~~~~~~~~----~~~i~~~~a~h~~~~~~ 131 (258)
T COG2220 78 -KAPVVVVPLGAG-------DLLI-RDGVE-------------AERVHELGWGDVIELG----DLEITAVPAYHVSARHL 131 (258)
T ss_pred -CCcEEEeHHHHH-------HHHH-hcCCC-------------cceEEeecCCceEEec----CcEEEEEEeeccccccc
Confidence 355555443321 0010 01100 0246777888888885 777655554332
Q ss_pred c--------CceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccc
Q 005253 155 L--------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (706)
Q Consensus 155 l--------Gs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est 202 (706)
+ +.++|.|..++.++.++||..+ . .... .....++|+++....
T Consensus 132 ~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~-~--~~~~--~~~~~~~DvallPig 182 (258)
T COG2220 132 PGRGIRPTGLWVGYVIETPGGRVYHAGDTGY-L--FLII--EELDGPVDVALLPIG 182 (258)
T ss_pred CCCCccccCCceEEEEEeCCceEEeccCccH-H--HHhh--hhhcCCccEEEeccC
Confidence 2 2578999999999999999987 1 1111 111234688887753
No 47
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.67 E-value=8.1e-08 Score=100.94 Aligned_cols=188 Identities=19% Similarity=0.112 Sum_probs=92.0
Q ss_pred CeEEEEEeecCCCC-----CCeE-------EEEEE--CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhh
Q 005253 3 TSVQVTPLSGVFNE-----NPLS-------YLVSI--DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHL 68 (706)
Q Consensus 3 ~~m~~t~LgGa~~~-----g~sc-------~LL~~--~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHi 68 (706)
+.|+|++|+-+.+. +.+| .++.. ...+++||+|.+... +.+....+.+|+||+||.|.||+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~~~-----~~~~~~~~~idai~~TH~H~DHi 76 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDLRD-----QGLRLGVSDLDAILLTHEHSDHI 76 (269)
T ss_pred CceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhHHh-----hhhcccccccCeEEEecccHHhh
Confidence 56899988644322 3334 23322 234666776653211 11122236899999999999999
Q ss_pred ccHHHHHHhcCCCCCeeecchhhhhchhh-hHHHHHhhhccCCCCCCCHHhHHHhhcccEEe-cCCCEEEecccCCCEEE
Q 005253 69 GALPYAMKQLGLSAPVFSTEPVYRLGLLT-MYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRL-TYSQNYHLSGKGEGIVV 146 (706)
Q Consensus 69 GgLp~L~~~~g~~~~VyaT~pt~~l~~~~-l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v-~y~q~~~l~~~~~gl~i 146 (706)
.|++.|... +..++|++..+....... +.+.+.... ...++.++...+.. ..+.+. ..++.+... +..+
T Consensus 77 ~Gl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~hd~~~~~----~~~~ 147 (269)
T COG1235 77 QGLDDLRRA--YTLPIYVNPGTLRASTSDRLLGGFPYLF-RHPFPPFSLPAIGG--LEVTPFPVPHDAIEPV----GFVI 147 (269)
T ss_pred cChHHHHHH--hcCCcccccceecccchhhhhccchhhh-cCCCCccccccccc--eeeecCCCCCccccCC----Cccc
Confidence 999999874 467788777665533211 111100000 00000010000000 001100 011111111 1111
Q ss_pred EEEeCC-CCcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccc
Q 005253 147 APHVAG-HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 147 t~~~aG-H~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~ 206 (706)
...+.- |.....+|.++.....+.|+.|+.+.++.+- ..+......++++.+.++...
T Consensus 148 ~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d--~~l~~~~~~~~~~~~~~~~~~ 206 (269)
T COG1235 148 IRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHD--VELLDNGLYPLDIKDRILPDP 206 (269)
T ss_pred ccCcccccccccceeeeeeeeccEEEccccccCcchhH--HHHhcCCccceeeeecccccc
Confidence 111111 2234456666666678999999998876543 122223445677777776554
No 48
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.56 E-value=1.2e-06 Score=87.66 Aligned_cols=229 Identities=18% Similarity=0.193 Sum_probs=120.5
Q ss_pred EEEEEeecCCC--CCCeEEEEEECCeEEEEeCCCCCCCCccCCcc--------------ccCCCCCccEEEcCCCchhhh
Q 005253 5 VQVTPLSGVFN--ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP--------------LSKVASTIDAVLLSHPDTLHL 68 (706)
Q Consensus 5 m~~t~LgGa~~--~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~--------------l~~~~~~IdaIlLTH~H~DHi 68 (706)
|+++|+ +..+ ....|.+++..+..||||+|..-....-.+.+ +.....+.|.|.|||.|.||-
T Consensus 1 MkV~Pl-a~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHh 79 (304)
T COG2248 1 MKVIPL-ASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHH 79 (304)
T ss_pred Cceeec-cccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccC
Confidence 688898 4333 35678999999999999999864332212211 122356789999999999997
Q ss_pred cc-HHHHHHhcC------CCCC-eeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEeccc
Q 005253 69 GA-LPYAMKQLG------LSAP-VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGK 140 (706)
Q Consensus 69 Gg-Lp~L~~~~g------~~~~-VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~ 140 (706)
-- ++-++...+ |.++ +.+-.||..+-+....-.+. | +-...++. +-.....++++.++
T Consensus 80 tPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~-------f-l~~~~~~~----~~ie~ADgk~f~fG-- 145 (304)
T COG2248 80 TPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYR-------F-LESLKDIA----REIEYADGKTFEFG-- 145 (304)
T ss_pred CccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHH-------H-HHHhhhhc----ceeEecCCceEEeC--
Confidence 43 112221100 0111 22333333322211110000 0 00111111 11233457888885
Q ss_pred CCCEEEEEEe-CCCCc-----Cc-eEEEEEeCCeEEEEEecCCC-CCccccCcccccCCCCCcEEeecc--ccccccCCC
Q 005253 141 GEGIVVAPHV-AGHLL-----GG-TVWKITKDGEDVIYAVDYNR-RKEKHLNGTVLESFVRPAVLITDA--YNALHNQPP 210 (706)
Q Consensus 141 ~~gl~it~~~-aGH~l-----Gs-~~~~I~~~~~~IlytGD~~~-~~~~~L~~~~l~~l~~~d~LI~es--t~~~~~~~~ 210 (706)
+.+|.+-+ .-|-+ |- .++.|..+..+|+|+.|..- ..+..+. .+- =.+|+++|+++ ||...-.-.
T Consensus 146 --~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~--~i~-e~~P~v~ii~GPpty~lg~r~~ 220 (304)
T COG2248 146 --GTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALE--FIL-EKRPDVLIIGGPPTYLLGYRVG 220 (304)
T ss_pred --CEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHH--HHH-hcCCCEEEecCCchhHhhhhcC
Confidence 78888754 35654 32 35566778899999999862 2222111 110 14799999987 433322112
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEE-eecCc--hhHHHHHHHHHHHHH
Q 005253 211 RQQREMFQDAISKTLRAGGNVLL-PVDSA--GRVLELLLILEDYWA 253 (706)
Q Consensus 211 r~~~~~l~~~I~~tl~~gG~VLI-P~~~~--GR~~ELl~~L~~~~~ 253 (706)
.+..+.-++.+.+.+.+.+..|| --..+ .+--|.+.-|...-.
T Consensus 221 ~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~ 266 (304)
T COG2248 221 PKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAE 266 (304)
T ss_pred hHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHh
Confidence 23344445666666666644444 43332 444466665555443
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.28 E-value=2.9e-05 Score=83.23 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=106.6
Q ss_pred EEEEeecCCC---CCCeEEEEEEC--CeEEEEeCCCCCCC----------CccCCcccc--------------CCCCCcc
Q 005253 6 QVTPLSGVFN---ENPLSYLVSID--GFNFLIDCGWNDHF----------DPSLLQPLS--------------KVASTID 56 (706)
Q Consensus 6 ~~t~LgGa~~---~g~sc~LL~~~--~~~ILiDcG~~~~~----------~~~~l~~l~--------------~~~~~Id 56 (706)
.+.+||-.++ ...++||++.. +..+-+|+|..... ........+ .....|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 4566654333 36788999875 57889999963211 000000000 0124689
Q ss_pred EEEcCCCchhhhccHHHHHHhcC----CCCCeeecchhhhhchhhhHHH--HHhhhccCCCCCCCHHhHHHhhcccEEec
Q 005253 57 AVLLSHPDTLHLGALPYAMKQLG----LSAPVFSTEPVYRLGLLTMYDQ--YLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130 (706)
Q Consensus 57 aIlLTH~H~DHiGgLp~L~~~~g----~~~~VyaT~pt~~l~~~~l~d~--~~~~~~~~~~~~~~~~dv~~~~~~i~~v~ 130 (706)
+.||||+|+||+.||-.-...+. ..-+||+...|.+..+..+... |-+.......+. -...+...++
T Consensus 82 ~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~-------~~~~~~~~l~ 154 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDY-------LYKYRYFDLS 154 (335)
T ss_pred eEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccc-------eeeeeeeecc
Confidence 99999999999999853221110 2457999999987655322111 111110000000 0011233344
Q ss_pred CCCEEEecc---------cCCCEEEEEEeCCCCcC------ceEEEEEeCC--eEEEEEecCCCCCccccCcc-----cc
Q 005253 131 YSQNYHLSG---------KGEGIVVAPHVAGHLLG------GTVWKITKDG--EDVIYAVDYNRRKEKHLNGT-----VL 188 (706)
Q Consensus 131 y~q~~~l~~---------~~~gl~it~~~aGH~lG------s~~~~I~~~~--~~IlytGD~~~~~~~~L~~~-----~l 188 (706)
+++...+.. ...+..+++++..|.-+ |++|.|+... +.|+|.||+....-...+-. .+
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ 234 (335)
T PF02112_consen 155 PGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYA 234 (335)
T ss_pred ccceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHH
Confidence 443333220 00245677799888654 6999999864 99999999987542111100 00
Q ss_pred -c--CCCCCcEEeeccccccc
Q 005253 189 -E--SFVRPAVLITDAYNALH 206 (706)
Q Consensus 189 -~--~l~~~d~LI~est~~~~ 206 (706)
+ ...+...+++||.|...
T Consensus 235 ap~I~~~~LkaI~IEcS~~~~ 255 (335)
T PF02112_consen 235 APKIASGKLKAIFIECSYPNS 255 (335)
T ss_pred HhhccccccCEEEEEeCCCCC
Confidence 1 12356789999988763
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.06 E-value=0.001 Score=64.06 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=70.3
Q ss_pred CCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 13 VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 13 a~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
..+..-+|+++..++.+||||+-.-. .+.+..+. ....++.|+|||. ||+-+...+.+++ .++||+....+.
T Consensus 18 ~~n~dfng~~~~~p~GnilIDP~~ls---~~~~~~l~-a~ggv~~IvLTn~--dHvR~A~~ya~~~--~a~i~~p~~d~~ 89 (199)
T PF14597_consen 18 ARNLDFNGHAWRRPEGNILIDPPPLS---AHDWKHLD-ALGGVAWIVLTNR--DHVRAAEDYAEQT--GAKIYGPAADAA 89 (199)
T ss_dssp TTTEEEEEEEE--TT--EEES--------HHHHHHHH-HTT--SEEE-SSG--GG-TTHHHHHHHS----EEEEEGGGCC
T ss_pred hhccCceeEEEEcCCCCEEecCcccc---HHHHHHHH-hcCCceEEEEeCC--hhHhHHHHHHHHh--CCeeeccHHHHh
Confidence 33446789999999999999987422 12222221 2357899999986 6999998888875 499999876654
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~Ilyt 172 (706)
..... .-..+..|+ .+. +|+++..++-.|++|...+.++ ++++++
T Consensus 90 ~~p~~---------------------------~D~~l~dge--~i~---~g~~vi~l~G~ktpGE~ALlle---d~vLi~ 134 (199)
T PF14597_consen 90 QFPLA---------------------------CDRWLADGE--EIV---PGLWVIHLPGSKTPGELALLLE---DRVLIT 134 (199)
T ss_dssp C-SS-----------------------------SEEE-TT---BSS---TTEEEEEE-SSSSTTEEEEEET---TTEEEE
T ss_pred hCCCC---------------------------CccccccCC--Ccc---CceEEEEcCCCCCCceeEEEec---cceEEe
Confidence 32210 012344444 233 5899988865599999999984 369999
Q ss_pred ecCCC
Q 005253 173 VDYNR 177 (706)
Q Consensus 173 GD~~~ 177 (706)
||.-.
T Consensus 135 GDl~~ 139 (199)
T PF14597_consen 135 GDLLR 139 (199)
T ss_dssp SSSEE
T ss_pred cceee
Confidence 99643
No 51
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.93 E-value=0.0019 Score=61.54 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=71.7
Q ss_pred CCeEEEEEE--CCeEEEEeCCCCCCC-CccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC-eeecchhhh
Q 005253 17 NPLSYLVSI--DGFNFLIDCGWNDHF-DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP-VFSTEPVYR 92 (706)
Q Consensus 17 g~sc~LL~~--~~~~ILiDcG~~~~~-~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~-VyaT~pt~~ 92 (706)
..-.|||-. ++..++||+-..... |...+..++ -++-.-+-||.|.||+-|-.+|...++ .++ |.+..
T Consensus 20 sTytYll~d~~~~~AviIDPV~et~~RD~qlikdLg---l~LiYa~NTH~HADHiTGtg~Lkt~~p-g~kSVis~~---- 91 (237)
T KOG0814|consen 20 STYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLG---LDLIYALNTHVHADHITGTGLLKTLLP-GCKSVISSA---- 91 (237)
T ss_pred ceEEEEeeeCCCCceEEecchhhcccchHHHHHhcC---ceeeeeecceeecccccccchHHHhcc-cHHHHhhhc----
Confidence 344577765 368999999865321 222233333 356677899999999998887765332 111 11000
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE-eCCCCcCceEEEEEeCCeEEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITKDGEDVIY 171 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~-~aGH~lGs~~~~I~~~~~~Ily 171 (706)
.... .-.-+..|+.++++ ++.+... .+||+.|..-|.+ ...+..|
T Consensus 92 ------------SGak----------------AD~~l~~Gd~i~~G----~~~le~ratPGHT~GC~TyV~--~d~~~aF 137 (237)
T KOG0814|consen 92 ------------SGAK----------------ADLHLEDGDIIEIG----GLKLEVRATPGHTNGCVTYVE--HDLRMAF 137 (237)
T ss_pred ------------cccc----------------cccccCCCCEEEEc----cEEEEEecCCCCCCceEEEEe--cCcceee
Confidence 0000 01235668888886 7777655 4899999877776 4566889
Q ss_pred EecC
Q 005253 172 AVDY 175 (706)
Q Consensus 172 tGD~ 175 (706)
|||.
T Consensus 138 TGDa 141 (237)
T KOG0814|consen 138 TGDA 141 (237)
T ss_pred ecce
Confidence 9885
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.72 E-value=0.0082 Score=60.55 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=87.0
Q ss_pred CCeEEEEEECCeEEEEeCCCCCC-----CCccCCcc---ccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDH-----FDPSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~-----~~~~~l~~---l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~ 88 (706)
|.+|.++..++.++|-|+=|... +.+..+.+ ....++++|.+++||.|+||.-+.....- .+...+++...
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~-~~~~~~~wfvp 165 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKI-TDRNPQIWFVP 165 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccchHHHHhh-hccCccceeeh
Confidence 78999999999999999877432 12222222 12457899999999999999977665432 23344443221
Q ss_pred hhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCc----------e
Q 005253 89 PVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG----------T 158 (706)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs----------~ 158 (706)
..+.-+..+ +. ...+..+.+++..++...++-++|.+.||-|.-+- +
T Consensus 166 -------~g~k~~m~~---------------~g-c~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~ 222 (343)
T KOG3798|consen 166 -------LGMKKWMEG---------------DG-SSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWS 222 (343)
T ss_pred -------hhhhheecC---------------CC-CCceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceee
Confidence 111100000 00 02234445555544443345678888888886542 4
Q ss_pred EEEEEeCCeEEEEEecCCCCCc
Q 005253 159 VWKITKDGEDVIYAVDYNRRKE 180 (706)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~~~~ 180 (706)
+|.+...+.+++|+||+++.+.
T Consensus 223 sw~v~g~~nrfffaGDTGyc~~ 244 (343)
T KOG3798|consen 223 SWAVIGENNRFFFAGDTGYCDG 244 (343)
T ss_pred eeEEecCCceEEecCCCCcccH
Confidence 6777777889999999999984
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=96.13 E-value=0.0047 Score=62.92 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCccEEEcCCCchhhhccHH----HHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEE
Q 005253 53 STIDAVLLSHPDTLHLGALP----YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTR 128 (706)
Q Consensus 53 ~~IdaIlLTH~H~DHiGgLp----~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~ 128 (706)
..|.--+|||+|+||+.|+- ...++ .+-.||+...|.+..+.....+.. +|-++. -..-+-+++.
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~lv-------WP~lt~--~gs~~~~~qv 179 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWLV-------WPNLTD--SGSGTYRMQV 179 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhcccc-------cCCccc--ccCceEEEEE
Confidence 46888999999999998863 22221 134689988888766543332211 111111 1111235566
Q ss_pred ecCCCEEEecccCCCEEEEEEeCCCCc--C----ceEEEEEeC--CeEEEEEecCCCC
Q 005253 129 LTYSQNYHLSGKGEGIVVAPHVAGHLL--G----GTVWKITKD--GEDVIYAVDYNRR 178 (706)
Q Consensus 129 v~y~q~~~l~~~~~gl~it~~~aGH~l--G----s~~~~I~~~--~~~IlytGD~~~~ 178 (706)
++..+...+. .-.+++.||+..|-. | |+++.+... .+-++|.||....
T Consensus 180 v~P~~~~slt--~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD 235 (356)
T COG5212 180 VRPAQSLSLT--LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPD 235 (356)
T ss_pred eChhHeeeee--eeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcc
Confidence 6666655542 124778899988854 3 467888764 6789999998764
No 54
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=95.55 E-value=0.018 Score=46.39 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=39.3
Q ss_pred CCeEEEEEECCeEEEE-eCCCCCCCCccCCccccCCCCCccEEEcCCCc-hhhhcc
Q 005253 17 NPLSYLVSIDGFNFLI-DCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD-TLHLGA 70 (706)
Q Consensus 17 g~sc~LL~~~~~~ILi-DcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H-~DHiGg 70 (706)
.++|++|.+|+.+.|+ +||-.. .+.+..-+....+++.||||+.+ ++++||
T Consensus 11 ~~p~l~l~~d~~rYlFGn~gEGt---QR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 11 SGPSLLLFFDSRRYLFGNCGEGT---QRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCCEEEEEeCCceEEeccCCcHH---HHHHHHcCCCccccceEEECCCCcccccCC
Confidence 3499999999999999 999642 12222233445789999999999 999987
No 55
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.088 Score=54.74 Aligned_cols=121 Identities=22% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
-+...++..++..+++|.|.. .+..-.....+|+.+.+||.|.+|+|.+-.+.. .|+
T Consensus 94 ~~~~tl~~d~~~v~v~~~gls------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~-----sp~------------ 150 (302)
T KOG4736|consen 94 QGQITLVVDGGDVVVVDTGLS------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ-----SPI------------ 150 (302)
T ss_pred hcccceeecCCceEEEecCCc------hhhhcCcChhhcceeEEeccCcccccccccccC-----CHH------------
Confidence 456678888889999999975 223333446789999999999999998755431 121
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEe--CCeEEEEEec
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK--DGEDVIYAVD 174 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~--~~~~IlytGD 174 (706)
++....-..+ .+.. ..++-++...+. +++.+. -.+||+.-+....+.. ...+++|+||
T Consensus 151 -l~~s~e~~gr-----~~~p----------t~l~e~~~~~l~---~~~~V~-~TpGht~~~isvlv~n~~~~GTv~itGD 210 (302)
T KOG4736|consen 151 -LYHSMEYIGR-----HVTP----------TELDERPYLKLS---PNVEVW-KTPGHTQHDISVLVHNVDLYGTVAITGD 210 (302)
T ss_pred -HhhhhhhcCC-----ccCh----------hhhccCCccccC---CceeEe-eCCCCCCcceEEEEEeecccceEEEEee
Confidence 1111000000 0000 122334455554 344443 3589998766666654 5689999999
Q ss_pred CCCCCc
Q 005253 175 YNRRKE 180 (706)
Q Consensus 175 ~~~~~~ 180 (706)
+-.+..
T Consensus 211 Lf~~~~ 216 (302)
T KOG4736|consen 211 LFPREE 216 (302)
T ss_pred cccCCc
Confidence 976653
No 56
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=93.78 E-value=0.24 Score=55.39 Aligned_cols=112 Identities=16% Similarity=0.251 Sum_probs=71.5
Q ss_pred EEEEEeecCCCCCCeE-EEEEECCeEEEEeCCCCC-CCCccCC----ccccC---CCCCccEEEcCCCchhhhccHHHHH
Q 005253 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWND-HFDPSLL----QPLSK---VASTIDAVLLSHPDTLHLGALPYAM 75 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc-~LL~~~~~~ILiDcG~~~-~~~~~~l----~~l~~---~~~~IdaIlLTH~H~DHiGgLp~L~ 75 (706)
++|+|+ +++.+.++| +++++++ ..||++|... ..|+... .+.+. .....-++-++|+|.+|.|.++++.
T Consensus 151 Ikf~p~-~aGhVlgacMf~veiag-v~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vI 228 (668)
T KOG1137|consen 151 IKFWPY-HAGHVLGACMFMVEIAG-VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVI 228 (668)
T ss_pred eEEEee-ccchhhhheeeeeeece-EEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhH
Confidence 899997 588887777 6778875 4567888643 2222211 11111 1345678889999999999999988
Q ss_pred HhcCCC-----CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhH
Q 005253 76 KQLGLS-----APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119 (706)
Q Consensus 76 ~~~g~~-----~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv 119 (706)
...-.+ .||||...+.++... +.++|.+.......|+|.....
T Consensus 229 h~~v~rGGR~L~PvFAlgrAqELlli-ldeyw~~h~~l~~iPiyyaSsl 276 (668)
T KOG1137|consen 229 HSTVPRGGRVLIPVFALGRAQELLLI-LDEYWGNHVDLRDIPIYYASSL 276 (668)
T ss_pred HhhccCCCceEeeeeecchHHHHHHH-HHHHhhcchhhhcCceeehhhH
Confidence 754334 699999988887653 3445544433334455554443
No 57
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=92.49 E-value=0.082 Score=60.52 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=46.2
Q ss_pred EEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHH
Q 005253 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (706)
Q Consensus 7 ~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~ 76 (706)
+.+|+|+. +.+-|.-++|.+||++-|..... -+|. +-.+..+||+|||||...|.++|+-.|++
T Consensus 40 cYIfpGg~---gdaALFavnGf~iLv~GgserKS--~fwk-lVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 40 CYIFPGGR---GDAALFAVNGFNILVNGGSERKS--CFWK-LVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred EEECCCCC---CcceeEeecceEEeecCCccccc--chHH-HHHHHhhhhhhhhcccccCccccchHHHH
Confidence 44555544 45567888999999999975321 1222 23456799999999999999999988776
No 58
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.43 E-value=0.08 Score=58.22 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=47.5
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCC----ccccCCCCCccEEEcCCCchhhhccHHHHHHh----cCCCCCeeecc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLL----QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ----LGLSAPVFSTE 88 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l----~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~----~g~~~~VyaT~ 88 (706)
-.+...++.|...|+||+=..+......+ +.++ -..|.+|+.||+|.||.||..-+... .| +++|.+..
T Consensus 125 isNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g--~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG-kV~iiAP~ 201 (655)
T COG2015 125 ISNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRG--QRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG-KVQIIAPA 201 (655)
T ss_pred ccceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcC--CCCeEEEEeecccccccCCeeeccCHHHcccC-ceeEecch
Confidence 45677888888999999876432211111 1222 35789999999999999998766542 23 56777654
Q ss_pred h
Q 005253 89 P 89 (706)
Q Consensus 89 p 89 (706)
.
T Consensus 202 G 202 (655)
T COG2015 202 G 202 (655)
T ss_pred h
Confidence 3
No 59
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=78.88 E-value=3.4 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.8
Q ss_pred CCEEEEEEeCCCCcCceEEEEEeCCeEEEEE
Q 005253 142 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 142 ~gl~it~~~aGH~lGs~~~~I~~~~~~Ilyt 172 (706)
+.+.++++.||.-.|-+++.+..++++|.+-
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~D 32 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFD 32 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEe
Confidence 3678999999999999999999999999884
No 60
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=46.84 E-value=23 Score=39.95 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=37.4
Q ss_pred CCeeEEeecceEeEeCCHHHHHHHHHHHhhcCCCceeecCCCceEEE
Q 005253 523 KPSKVVSNELTVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 569 (706)
Q Consensus 523 ~P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~~~~~v~~p~~~e~v~~ 569 (706)
+|.|+ +++||.+.++.+||..++..+.+..++|...|+|-+
T Consensus 596 kP~ki------~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 596 KPEKI------LLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred CCcee------EeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 57788 899999999999999999988899999999999864
No 61
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=36.42 E-value=42 Score=37.89 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=71.7
Q ss_pred eeecCCCceEEEeeeeeEEEEEeChhhhhcccceecC-C-ceEEEEEEEEeecCCCceeeccCCC----------CCCC-
Q 005253 558 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-D-YEIAWVDAEVGKTENGMLSLLPIST----------PAPP- 624 (706)
Q Consensus 558 v~~p~~~e~v~~~~~~~~~~v~L~d~L~~~l~~~~~~-~-~~va~v~g~l~~~~~~~~~l~p~~~----------~~~~- 624 (706)
+-+-..+|.++...-.+--.|-+.++|.++|+|.+++ + +.+|.+.|.|...+ .+.-|.|... .+|.
T Consensus 496 i~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~~~iAtl~~~L~~~d-~kh~Lvp~~~~~k~ek~s~~~~p~l 574 (653)
T KOG1138|consen 496 IKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGEFGIATLKGVLLMKD-GKHRLVPAKVSLKQEKSSSKARPVL 574 (653)
T ss_pred cceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCceeEEEEEEEEEEEec-CceeeeecccchhhhhcccccchHH
Confidence 5566677777877777778899999999999999997 5 99999999998653 3334555221 1110
Q ss_pred -C-cceeecccchhchhhHHHhCC---CceEEeC-cEEEE
Q 005253 625 -H-KSVLVGDLKMADLKPFLSSKG---IQVEFAG-GALRC 658 (706)
Q Consensus 625 -~-~~~~igd~rL~~lk~~L~~~g---~~aeF~g-G~Lv~ 658 (706)
+ +..--|++-+.++-+.|.+.| ++.+=.| |.-+.
T Consensus 575 k~lk~~~a~ei~vda~~k~~ik~~~s~itvdn~g~g~~i~ 614 (653)
T KOG1138|consen 575 KVLKNSVAGEILVDALLKMLIKGGFSQITVDNTGEGKSII 614 (653)
T ss_pred hhhhhccCcccchHHHHHHHhhcchhheeeecCCCceEEE
Confidence 1 345568899999999998876 5566666 65443
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=33.37 E-value=74 Score=31.95 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=43.5
Q ss_pred CCCcEEeeccccccccCCChh-h-----HHHHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHHh
Q 005253 192 VRPAVLITDAYNALHNQPPRQ-Q-----REMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254 (706)
Q Consensus 192 ~~~d~LI~est~~~~~~~~r~-~-----~~~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~~ 254 (706)
...|+++++........+... . .+.+++.+.+.|+.||.+++-++..+++++++..+..+|..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 357888887532111111111 0 12566778888999999999999999999999988877754
No 63
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=21.04 E-value=1.6e+02 Score=28.41 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCcEEeeccccccccCCCh-hhH--H---HHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHHhc
Q 005253 192 VRPAVLITDAYNALHNQPPR-QQR--E---MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255 (706)
Q Consensus 192 ~~~d~LI~est~~~~~~~~r-~~~--~---~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~~~ 255 (706)
.++|++++|........+.. ..+ + ..+....+.++.||+.++-++......+++..+.++++.-
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 36899999983322222101 111 1 2223444568899999999988766569999999988763
No 64
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=20.74 E-value=7.2e+02 Score=24.84 Aligned_cols=60 Identities=25% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCeEEEee--cC--chhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhh
Q 005253 216 MFQDAISKTLRAGGNVLLPV--DS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW 281 (706)
Q Consensus 216 ~l~~~I~~tl~~gG~VLIP~--~~--~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ew 281 (706)
+..+.+.+.+++|.+|.+-+ |+ .|+..+++..+.+. .+++-++.+.+.-....++.-..|
T Consensus 59 ~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~------g~~veviPGiSS~~aa~a~~g~~l 122 (229)
T TIGR01465 59 EIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEAL------GIPYEVVPGVSSFFAAAAALGAEL 122 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHC------CCCEEEECChhHHHHHHHHcCCCc
Confidence 44566666666676655532 22 36666777666543 457777777666555555554444
No 65
>PRK12383 putative mutase; Provisional
Probab=20.34 E-value=61 Score=36.15 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=27.8
Q ss_pred cchhchhhHHHhCCCceEEeC-c--EEEECCeEEE
Q 005253 633 LKMADLKPFLSSKGIQVEFAG-G--ALRCGEYVTI 664 (706)
Q Consensus 633 ~rL~~lk~~L~~~g~~aeF~g-G--~Lv~~~~v~v 664 (706)
--+.++.+.|.++||++|..+ | +|+++|.+++
T Consensus 106 ~~i~~~~~~~~~~g~~v~~~~~g~~~l~v~n~~~s 140 (406)
T PRK12383 106 DVIDRVEQALESAGYQVERRGDGLQFLLVNQAVAI 140 (406)
T ss_pred HHHHHHHHHhhhccccccccCCCCeEEeECCCccc
Confidence 457889999999999999997 7 9999988775
Done!