Query 005253
Match_columns 706
No_of_seqs 404 out of 3191
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i7x_A Protein CFT2; polyadeny 100.0 1.3E-82 4.3E-87 744.1 37.4 553 5-570 1-717 (717)
2 3iek_A Ribonuclease TTHA0252; 100.0 3.3E-62 1.1E-66 543.9 38.7 359 5-387 1-364 (431)
3 2i7t_A Cleavage and polyadenyl 100.0 7.2E-56 2.4E-60 497.5 37.3 355 3-366 10-369 (459)
4 3af5_A Putative uncharacterize 100.0 1E-50 3.5E-55 472.7 38.1 357 4-366 188-562 (651)
5 2ycb_A Beta-CAsp RNAse, cleava 100.0 4.5E-50 1.5E-54 466.4 39.2 358 3-366 178-547 (636)
6 2xr1_A Cleavage and polyadenyl 100.0 6.2E-50 2.1E-54 465.0 38.4 358 3-366 182-551 (640)
7 3zq4_A Ribonuclease J 1, RNAse 100.0 6.6E-36 2.3E-40 341.3 27.0 308 3-362 7-340 (555)
8 3bk2_A RNAse J, metal dependen 100.0 2.8E-33 9.6E-38 320.9 29.4 312 3-362 15-355 (562)
9 2az4_A Hypothetical protein EF 99.9 1.8E-26 6.2E-31 256.4 21.1 310 4-360 6-356 (429)
10 4b87_A DNA cross-LINK repair 1 99.9 2E-22 6.8E-27 218.6 15.4 210 4-264 11-228 (367)
11 3zdk_A 5' exonuclease apollo; 99.9 7.4E-22 2.5E-26 211.5 14.9 181 53-268 23-209 (336)
12 1zkp_A Hypothetical protein BA 99.8 2.3E-18 7.8E-23 178.7 16.1 167 4-205 24-204 (268)
13 3g1p_A Protein PHNP; C-P lyase 99.8 3.2E-18 1.1E-22 176.9 15.1 167 4-206 2-193 (258)
14 2cbn_A Ribonuclease Z; phospho 99.8 2.7E-18 9.3E-23 181.4 13.4 173 5-205 2-238 (306)
15 1y44_A Ribonuclease Z; zinc-de 99.7 2.9E-18 1E-22 182.5 12.3 173 5-205 1-236 (320)
16 3zwf_A Zinc phosphodiesterase 99.7 1E-16 3.5E-21 174.2 10.7 224 5-240 1-315 (368)
17 2e7y_A TRNAse Z; tRNA maturati 99.7 6.4E-16 2.2E-20 160.7 16.1 160 18-206 12-214 (280)
18 3md7_A Beta-lactamase-like; ss 99.6 5.2E-16 1.8E-20 163.4 13.1 179 3-205 27-235 (293)
19 3kl7_A Putative metal-dependen 99.6 1.2E-14 4E-19 148.2 19.7 174 3-239 28-212 (235)
20 3jxp_A Coenzyme PQQ synthesis 99.6 7.8E-16 2.7E-20 164.1 9.1 168 17-205 40-227 (321)
21 2r2d_A AGR_PTI_140P, Zn-depend 99.5 2E-14 6.9E-19 149.2 12.4 148 17-179 42-218 (276)
22 3rpc_A Possible metal-dependen 99.5 4.8E-14 1.6E-18 146.0 14.2 191 3-238 3-228 (264)
23 3m8t_A 'BLR6230 protein; subcl 99.5 2.1E-14 7.1E-19 150.4 10.7 146 16-177 53-205 (294)
24 2xf4_A Hydroxyacylglutathione 99.5 3.5E-14 1.2E-18 141.3 11.0 151 4-178 2-155 (210)
25 3esh_A Protein similar to meta 99.5 8.8E-15 3E-19 152.7 6.7 148 17-179 47-211 (280)
26 3l6n_A Metallo-beta-lactamase; 99.5 1.4E-14 4.7E-19 145.1 7.4 129 17-177 30-161 (219)
27 1k07_A FEZ-1 beta-lactamase; m 99.5 5E-14 1.7E-18 145.4 11.1 147 17-177 24-177 (263)
28 3dha_A N-acyl homoserine lacto 99.5 1.9E-14 6.3E-19 147.7 7.6 137 17-179 38-200 (254)
29 3adr_A Putative uncharacterize 99.5 3.9E-13 1.3E-17 138.2 16.6 151 5-178 6-169 (261)
30 2wyl_A L-ascorbate-6-phosphate 99.5 6.6E-13 2.3E-17 143.7 18.7 164 3-202 36-250 (360)
31 2zwr_A Metallo-beta-lactamase 99.5 1.6E-13 5.4E-18 136.5 10.8 147 4-178 2-148 (207)
32 1m2x_A Class B carbapenemase B 99.5 4.7E-14 1.6E-18 141.9 7.0 129 17-177 26-157 (223)
33 4hl2_A Beta-lactamase NDM-1; s 99.4 9.8E-15 3.4E-19 148.9 1.3 139 16-178 46-185 (243)
34 3bv6_A Metal-dependent hydrola 99.4 2E-12 6.8E-17 141.0 19.4 164 3-202 60-275 (379)
35 1ztc_A Hypothetical protein TM 99.4 8.4E-14 2.9E-18 140.2 7.6 154 5-178 13-178 (221)
36 3tp9_A Beta-lactamase and rhod 99.4 1.6E-13 5.4E-18 154.1 10.5 143 4-178 3-153 (474)
37 4efz_A Metallo-beta-lactamase 99.4 1E-13 3.6E-18 146.0 8.4 156 4-178 4-178 (298)
38 2p18_A Glyoxalase II; metallop 99.4 6.7E-13 2.3E-17 140.8 13.2 140 3-178 27-184 (311)
39 3aj3_A MLR6805 protein, 4-pyri 99.4 1.2E-13 4.1E-18 143.3 7.2 163 2-179 1-212 (274)
40 1mqo_A Beta-lactamase II; alph 99.4 6.4E-14 2.2E-18 141.3 5.0 129 17-177 40-171 (227)
41 1e5d_A Rubredoxin\:oxygen oxid 99.4 1.3E-12 4.3E-17 143.2 15.3 131 17-177 34-168 (402)
42 1qh5_A Glyoxalase II, protein 99.4 4.6E-13 1.6E-17 138.4 10.9 130 4-177 2-137 (260)
43 1a7t_A Metallo-beta-lactamase; 99.4 9.9E-14 3.4E-18 140.5 5.6 130 17-178 36-168 (232)
44 1xm8_A Glyoxalase II; structur 99.4 4.2E-13 1.4E-17 138.2 10.3 121 17-177 11-134 (254)
45 2qed_A Hydroxyacylglutathione 99.4 4.7E-13 1.6E-17 138.2 9.8 129 4-177 7-137 (258)
46 2gcu_A Putative hydroxyacylglu 99.4 4.3E-13 1.5E-17 137.4 9.2 136 4-178 2-146 (245)
47 2zo4_A Metallo-beta-lactamase 99.4 9.2E-13 3.1E-17 139.6 11.7 153 17-178 21-194 (317)
48 4ad9_A Lactb2, beta-lactamase- 99.4 4.3E-13 1.5E-17 140.4 9.0 133 17-177 31-168 (289)
49 4ax1_B Metallo-beta-lactamase 99.4 3.7E-13 1.3E-17 141.3 7.3 147 17-177 57-209 (303)
50 1p9e_A Methyl parathion hydrol 99.4 2.7E-13 9.3E-18 145.1 6.1 151 18-179 97-260 (331)
51 2fhx_A SPM-1; metallo-beta-lac 99.4 8.2E-13 2.8E-17 134.6 8.6 146 17-177 29-187 (246)
52 3hnn_A Putative diflavin flavo 99.4 2.3E-13 8E-18 140.6 4.3 130 17-175 42-175 (262)
53 1sml_A Protein (penicillinase) 99.3 1.3E-12 4.6E-17 135.1 9.5 145 17-177 37-187 (269)
54 3iog_A Beta-lactamase; hydrola 99.3 5.2E-13 1.8E-17 134.2 5.6 145 16-176 21-167 (227)
55 2y8b_A Metallo-B-lactamase; hy 99.3 5.7E-13 2E-17 138.0 6.0 134 17-178 67-201 (265)
56 3r2u_A Metallo-beta-lactamase 99.3 1.1E-12 3.8E-17 146.8 8.6 188 4-237 24-220 (466)
57 2bib_A CBPE, teichoic acid pho 99.3 1.5E-11 5.3E-16 140.4 18.0 225 3-263 4-279 (547)
58 3q6v_A Beta-lactamase; metallo 99.3 9.9E-13 3.4E-17 132.7 6.8 147 16-178 24-172 (233)
59 2vw8_A PA1000, PQSE; quinolone 99.3 2.6E-12 9E-17 135.4 9.9 152 17-176 23-182 (303)
60 1ycg_A Nitric oxide reductase; 99.3 1.3E-11 4.6E-16 134.8 15.6 130 17-176 35-168 (398)
61 4dik_A Flavoprotein; TM0755, e 99.3 2.4E-12 8.1E-17 141.4 8.6 129 17-177 51-183 (410)
62 1jjt_A IMP-1 metallo beta-lact 99.3 9.3E-13 3.2E-17 133.0 5.0 128 17-177 32-161 (228)
63 2ohh_A Type A flavoprotein FPR 99.3 2.4E-12 8E-17 141.1 8.5 131 18-176 35-172 (404)
64 1vjn_A Zn-dependent hydrolase 99.3 8.9E-12 3E-16 125.5 11.7 122 17-202 19-147 (220)
65 2q9u_A A-type flavoprotein; fl 99.3 2.7E-11 9.1E-16 133.3 13.7 131 17-177 40-174 (414)
66 4eyb_A Beta-lactamase NDM-1; m 99.2 7E-13 2.4E-17 137.8 -0.2 137 17-177 74-211 (270)
67 2p97_A Hypothetical protein; p 99.1 3.8E-11 1.3E-15 118.8 6.7 122 14-178 20-141 (201)
68 2cfu_A SDSA1; SDS-hydrolase, l 99.0 1.4E-10 4.7E-15 134.9 2.3 155 17-178 122-303 (658)
69 2yhe_A SEC-alkyl sulfatase; hy 98.4 2.1E-10 7.1E-15 133.0 0.0 155 17-177 132-313 (668)
70 2p4z_A Metal-dependent hydrola 98.8 2E-09 6.7E-14 112.5 6.2 87 4-92 12-105 (284)
71 3h3e_A Uncharacterized protein 98.2 4.6E-07 1.6E-11 93.4 3.1 76 5-92 13-94 (267)
72 3iek_A Ribonuclease TTHA0252; 65.2 5 0.00017 43.6 4.6 35 534-569 397-431 (431)
73 3af5_A Putative uncharacterize 58.1 8 0.00027 44.4 4.9 41 523-569 610-650 (651)
74 2xr1_A Cleavage and polyadenyl 57.3 9 0.00031 43.8 5.1 41 523-569 599-639 (640)
75 2ycb_A Beta-CAsp RNAse, cleava 55.4 9.4 0.00032 43.6 4.9 41 523-569 595-635 (636)
76 2i7t_A Cleavage and polyadenyl 51.2 13 0.00045 40.4 5.0 41 524-570 411-457 (459)
77 3lkz_A Non-structural protein 49.2 34 0.0012 35.1 7.2 84 192-278 159-257 (321)
78 3evf_A RNA-directed RNA polyme 37.3 71 0.0024 32.3 7.4 85 193-278 140-237 (277)
79 3gcz_A Polyprotein; flavivirus 29.1 73 0.0025 32.3 5.9 86 192-278 155-254 (282)
80 1jli_A Interleukin 3, multi-CS 26.2 31 0.001 29.6 2.1 32 612-643 68-99 (112)
81 3eld_A Methyltransferase; flav 25.8 1.2E+02 0.004 31.0 6.7 86 193-279 147-245 (300)
82 1ej0_A FTSJ; methyltransferase 23.0 54 0.0019 29.1 3.5 61 193-253 88-154 (180)
83 2lx9_A Ferrous iron transport 20.1 38 0.0013 27.6 1.5 52 625-686 6-72 (83)
No 1
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=100.00 E-value=1.3e-82 Score=744.13 Aligned_cols=553 Identities=22% Similarity=0.375 Sum_probs=358.3
Q ss_pred EEEEEeecCCC-CCCeEEEEEECCeEEEEeCCCCCCC-C-ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC--
Q 005253 5 VQVTPLSGVFN-ENPLSYLVSIDGFNFLIDCGWNDHF-D-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-- 79 (706)
Q Consensus 5 m~~t~LgGa~~-~g~sc~LL~~~~~~ILiDcG~~~~~-~-~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g-- 79 (706)
|+|++|+|+.+ .+++||||+.++.+||||||+.... . ...+..+....++||+|||||+|.||+||+|+|.++++
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g 80 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHCCHHHHHHhhhhc
Confidence 47888876654 5999999999999999999997531 0 00111222223489999999999999999999987532
Q ss_pred --CCCCeeecchhhhhchhhhHHHHHhhhccCCC--CCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCc
Q 005253 80 --LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155 (706)
Q Consensus 80 --~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~--~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~l 155 (706)
.++|||+|.++..+++.++.+.+........+ ++|+..++..++.++.+++|++++.+.+++++++|+++++||++
T Consensus 81 ~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ccCCceEEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 37999999999999888888776543322233 46788888888889999999999999322258999999999999
Q ss_pred CceEEEEEeCCeEEEEEecCCCCCccccCcccc--------cCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhc
Q 005253 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 227 (706)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l--------~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~ 227 (706)
|+++|+|+.++.+|+||||+++..++++.++.+ ..+.++|+||+|++|+...++.+...+.|.+.|.+++++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~h~~~~~~~~l~~~i~~~l~~ 240 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CcEEEEEEeCCCEEEEECCCCCCcccccCccccccccchhHHhccCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888776543 345689999999999887776543223899999999999
Q ss_pred CCeEEEeecCchhHHHHHHHHHHHH-H---hcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCC--CCCC-
Q 005253 228 GGNVLLPVDSAGRVLELLLILEDYW-A---EHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--NAFL- 299 (706)
Q Consensus 228 gG~VLIP~~~~GR~~ELl~~L~~~~-~---~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~--~pf~- 299 (706)
+|+||||+|++||+|||+++|.++| + .+.+ ++|||++|+++.+++++|+.+++||++.+.+.|.. +. +||.
T Consensus 241 ~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~~ 319 (717)
T 2i7x_A 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFEI 319 (717)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTCC
T ss_pred CCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhc-ccccCCccc
Confidence 9999999999999999999999998 2 2234 78999999999999999999999999998877765 44 5999
Q ss_pred CCCeEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCC-CCChhHHHhc--CC--------
Q 005253 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-FGTLARMLQA--DP-------- 368 (706)
Q Consensus 300 ~~~~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~-~~Tl~~~L~~--~~-------- 368 (706)
|+++++ .+.+++.++ ++|+||+||+ .+|+++++|.+||+||+|+||||||+. +||+||+|+. +.
T Consensus 320 ~~~l~~-~~~~~l~~~-~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~~ 394 (717)
T 2i7x_A 320 GSRIKI-IAPNELSKY-PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTF 394 (717)
T ss_dssp TTTEEE-CCGGGGGGC-CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC------
T ss_pred cccCcc-CCHHHHhhC-CCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHhhhhhhccccccc
Confidence 899998 788888887 6799999877 789999999999999999999999999 6999999963 11
Q ss_pred --------CCCceEeecceEEecchhhHHHHHHHHHHHHHH-HHHH-----------------hhhhcccccc-------
Q 005253 369 --------PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE-EALK-----------------ASLVKEEESK------- 415 (706)
Q Consensus 369 --------~~~~i~~~~~~~v~L~g~el~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~------- 415 (706)
.++.|++++.+||||+|+||++|+++++.++++ +++. ++...+++|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (717)
T 2i7x_A 395 PEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVE 474 (717)
T ss_dssp --CCCCEECCEEEEEEEEEEEESCSCCC----------------------------------------------------
T ss_pred ccccccccCCceEEEEEeeeccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccc
Confidence 126899999999999999999999987422221 1111 1111222211
Q ss_pred -------------cCCCCCCCC--CCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcccCCccccC
Q 005253 416 -------------ASLGPDNNL--SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDD 480 (706)
Q Consensus 416 -------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFP~~~~k~~~Dd 480 (706)
++|++|+++ +.+...++...+.+. +.+....++||+++++. +++++||||+++|+||||
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---~~~~~mFP~~~~~~k~Dd 548 (717)
T 2i7x_A 475 NVNGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSA---AKKNTEVPVDIIIQPSA---ASKHKMFPFNPAKIKKDD 548 (717)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccchhhcccccccccccc---ccccccCcceeeecccc---CCccCcCCcccCcccccC
Confidence 111111111 011211221111110 11112345799987654 357899999999999999
Q ss_pred cCcccCCCccccccccchh---hhh--------------c--cCCCCCCCCccc----------------------c---
Q 005253 481 FGEVINPDDYIIKDEDMDQ---AAM--------------H--IGGDDGKLDEGS----------------------A--- 516 (706)
Q Consensus 481 YGe~i~~~~~~~~~~~~~~---~~~--------------~--~~~~~~~~~~~~----------------------~--- 516 (706)
|||+||||||+++++..+. +.. + ..+.+.+|++.. .
T Consensus 549 yGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (717)
T 2i7x_A 549 YGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENFD 628 (717)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred CCCccCHHHhehhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999864321 000 0 000001111100 0
Q ss_pred ---ccccCCCCeeEEeecce---------------------------------EeEeCCHHHHHHHHHHHhhcCCCceee
Q 005253 517 ---SLILDAKPSKVVSNELT---------------------------------VLVHGSAEATEHLKQHCLKHVCPHVYT 560 (706)
Q Consensus 517 ---~~~~~~~P~K~v~~~~~---------------------------------ilv~g~~~~~~~l~~~~~~~~~~~v~~ 560 (706)
.....++|+|||+++.+ |||||++++|++|+++|++. +.+||+
T Consensus 629 ~~~~~~~~~~P~K~v~~~~~v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~~~~~l~~~~~~~-~~~v~~ 707 (717)
T 2i7x_A 629 NLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKK-NIEVVN 707 (717)
T ss_dssp CCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHT-TCEEEE
T ss_pred cchhhhccCCCeEEEEeeEEEEEEEEEEEEecCCCCcHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHHHHhc-CCeEEe
Confidence 01135799999987776 99999999999999999864 789999
Q ss_pred cCCCceEEEe
Q 005253 561 PQIEETIDVT 570 (706)
Q Consensus 561 p~~~e~v~~~ 570 (706)
|.+||+|++.
T Consensus 708 p~~~e~v~~~ 717 (717)
T 2i7x_A 708 MPLNKIVEFS 717 (717)
T ss_dssp CCSSCCEEEC
T ss_pred CCCCCeecCC
Confidence 9999999984
No 2
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=3.3e-62 Score=543.92 Aligned_cols=359 Identities=22% Similarity=0.342 Sum_probs=316.2
Q ss_pred EEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCC-ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC
Q 005253 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (706)
Q Consensus 5 m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~-~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (706)
|++++|||+++.++|||+|+.++.+||||||+..+.. ...+..++..+.+||+|||||+|.||+||+|+|.+ .++++|
T Consensus 1 M~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~ 79 (431)
T 3iek_A 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGP 79 (431)
T ss_dssp CEEEECSCSSSSSCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSC
T ss_pred CEEEEeCCCCCCCCcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCe
Confidence 6899999999899999999999999999999954321 12234455567789999999999999999999987 467899
Q ss_pred eeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEE
Q 005253 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (706)
Q Consensus 84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~ 163 (706)
||+|.++..+.+.++.+..... ..++|+.+++..++.++.++++++++.++ +++++++++||++|+++|+|+
T Consensus 80 Iy~t~~t~~l~~~~l~d~~~~~----~~~~y~~~~~~~~~~~~~~l~~~~~~~l~----g~~v~~~~agH~~Gs~~~~i~ 151 (431)
T 3iek_A 80 VYATRATVLLMEIVLEDALKVM----DEPFFGPEDVEEALGHLRPLEYGEWLRLG----ALSLAFGQAGHLPGSAFVVAQ 151 (431)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC----SSCSSCHHHHHHHHHTEEECCTTCCEEET----TEEEEEEECCSSTTCEEEEEE
T ss_pred EEEcHHHHHHHHHHHHHHHhhc----ccCCCCHHHHHHHHhccEEcCCCCeEEeC----CEEEEEEeCCCCcCceEEEEE
Confidence 9999999999887777654221 12678999999999999999999999994 899999999999999999999
Q ss_pred eCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHH
Q 005253 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (706)
Q Consensus 164 ~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ 242 (706)
.++.+|+||||++...+.++.... .+.++|+||+|+||+...++++..++ +|.+.|.+++++||+||||+|++||+|
T Consensus 152 ~~~~~ilfsGD~~~~~~~~l~~~~--~~~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~q 229 (431)
T 3iek_A 152 GEGRTLVYSGDLGNREKDVLPDPS--LPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQ 229 (431)
T ss_dssp ETTEEEEECCCCCCTTSSSSCCCC--BCCCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHH
T ss_pred ECCEEEEEeCCCCCCCCcccCCcc--ccCCccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEeccchHHH
Confidence 999999999999988877764433 24689999999999998887777777 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCC--CCC
Q 005253 243 ELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP--DGP 319 (706)
Q Consensus 243 ELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~--~~p 319 (706)
||+++|.++|++ + ++|||++|+++.+++++|+.+.|||++++++.+.. ++|||.|++++++.+.++.+++. ++|
T Consensus 230 ell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~pf~~~~~~~~~~~~~~~~~~~~~~p 306 (431)
T 3iek_A 230 EILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQ-GKNPFRPAGLEVVEHTEASKALNRAPGP 306 (431)
T ss_dssp HHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHT-TSCTTCCTTEEECCSHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCCCCCCeEEeCCHHHHHHHhcCCCC
Confidence 999999999977 5 79999999999999999999999999999887764 78999999999999999876652 889
Q ss_pred cEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhcCCCCCceEeecceEEecchhh
Q 005253 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387 (706)
Q Consensus 320 ~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~~~~~~~i~~~~~~~v~L~g~e 387 (706)
|||||++|||++|+++++|++|++||+|+|||||||++||+||+|+.. .++|++.|++
T Consensus 307 ~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~----------~~~v~~~g~~ 364 (431)
T 3iek_A 307 MVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIAR----------PPAVRILGEE 364 (431)
T ss_dssp EEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTC----------CSEEEETTEE
T ss_pred eEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcC----------CcEEEECCEE
Confidence 999999999999999999999999999999999999999999999952 4567777753
No 3
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=7.2e-56 Score=497.51 Aligned_cols=355 Identities=26% Similarity=0.491 Sum_probs=269.2
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCC-ccCCccc-cCCCCCccEEEcCCCchhhhccHHHHHHhcCC
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSLLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~-~~~l~~l-~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~ 80 (706)
..|++++||++++.++|||+|+.++.+||||||+..+.. ...+..+ ...+.+||+|||||+|.||+||+|++..+.++
T Consensus 10 ~~m~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~ 89 (459)
T 2i7t_A 10 DQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSF 89 (459)
T ss_dssp EEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSC
T ss_pred CeEEEEEEecCCCCCCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcCC
Confidence 469999999988889999999999999999999975431 1112211 23566899999999999999999999887788
Q ss_pred CCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEE
Q 005253 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160 (706)
Q Consensus 81 ~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~ 160 (706)
++|||+|.++..+.+..+.+...........+.|+..++..+..++..+++++++.++ |++++++++||++|+++|
T Consensus 90 ~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gi~v~~~~~GH~~Gs~~~ 165 (459)
T 2i7t_A 90 KGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVA----GIKFWCYHAGHVLGAAMF 165 (459)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEET----TEEEEEEECCSSTTCEEE
T ss_pred CCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEEC----CEEEEEEeCCCccCcEEE
Confidence 8999999999988776665542211111123567778888888889999999999995 899999999999999999
Q ss_pred EEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhcCCeEEEeecCch
Q 005253 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239 (706)
Q Consensus 161 ~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~G 239 (706)
+|+.++++|+|+||+++.++.++.++.++. .++|+||+|+||+...++++..++ .|.+.+.++++.+|+|+||+|++|
T Consensus 166 ~i~~~~~~il~sGD~~~~~~~~~~~~~~~~-~~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~g 244 (459)
T 2i7t_A 166 MIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 244 (459)
T ss_dssp EEEETTEEEEECCSCCCC-----CCCCCCS-SCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSS
T ss_pred EEEECCcEEEEeCCCCCCCCcccCCCCcCC-CCCeEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEEecchh
Confidence 999999999999999998877665554432 589999999999987777777777 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhc-CC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCCC
Q 005253 240 RVLELLLILEDYWAEH-SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317 (706)
Q Consensus 240 R~~ELl~~L~~~~~~~-~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~~ 317 (706)
|+|||+++|+++|.++ .+ .+|||++|+++.+++++|+.+.+||++.+++.+. ..|||.|++++.+.+.+++. . .
T Consensus 245 r~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~-~-~ 320 (459)
T 2i7t_A 245 RAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFD-D-I 320 (459)
T ss_dssp SHHHHHHHHHHHHHHCGGGTTSCEEEC-----------------------------------CCSEEECCCTTSSC-C-C
T ss_pred HHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhc--ccCCcCCCcceeeCCHHHhc-C-C
Confidence 9999999999999885 34 7999999999999999999999999999888775 47999999999988877653 2 7
Q ss_pred CCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhc
Q 005253 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366 (706)
Q Consensus 318 ~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~ 366 (706)
+||||||+++||++|+++++|++|++||+|+||||||+.+||+||+|+.
T Consensus 321 ~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~ 369 (459)
T 2i7t_A 321 GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMS 369 (459)
T ss_dssp SSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTT
T ss_pred CCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhh
Confidence 8999999999999999999999999999999999999999999999985
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=1e-50 Score=472.73 Aligned_cols=357 Identities=24% Similarity=0.379 Sum_probs=303.0
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCC---ccCCcccc---C--CC--CCccEEEcCCCchhhhccHHH
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD---PSLLQPLS---K--VA--STIDAVLLSHPDTLHLGALPY 73 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~---~~~l~~l~---~--~~--~~IdaIlLTH~H~DHiGgLp~ 73 (706)
.|++++|||+++.|+|||+|+.++.+||||||+..... ...+..+. . .. .+||+|||||+|.||+||+|+
T Consensus 188 ~m~i~~LG~~~~vg~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp~ 267 (651)
T 3af5_A 188 WIRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLPY 267 (651)
T ss_dssp CEEEEEEECSSSSSCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHHH
T ss_pred ceEEEEEecCCCCCCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHHH
Confidence 59999999988889999999999999999999874321 11122221 1 34 689999999999999999999
Q ss_pred HHHhcC-CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCC
Q 005253 74 AMKQLG-LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152 (706)
Q Consensus 74 L~~~~g-~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aG 152 (706)
|.+. + +++|||+|.++..+.+..+.++..........+.|+..++..+..++.++++++.+.+. ++++++++++|
T Consensus 268 L~~~-~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~g 343 (651)
T 3af5_A 268 LFRY-NLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAG 343 (651)
T ss_dssp HHHT-TCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECS
T ss_pred HHhc-CCCCceEEEcHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEec---CCEEEEEecCC
Confidence 9863 4 57999999999998776666654322111223467778888777788899999999994 38999999999
Q ss_pred CCcCceEEEEEeCCe--EEEEEecCCCCCccccCcccccCCCCCcEEeecccccccc--CCChhhHH-HHHHHHHHHHhc
Q 005253 153 HLLGGTVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRA 227 (706)
Q Consensus 153 H~lGs~~~~I~~~~~--~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~ 227 (706)
|++|+++|.++.++. +++||||++...+.++.++.+. +.++|+||+||||+... ++++...+ .|.+.|.+++++
T Consensus 344 H~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~ 422 (651)
T 3af5_A 344 HILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAK-FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKR 422 (651)
T ss_dssp SSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCB-CSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcCcEEEEEEECCCceEEEEeCCCCCCccccccccccc-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999998887 9999999999988777654332 46899999999999876 77777666 999999999999
Q ss_pred CCeEEEeecCchhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcC
Q 005253 228 GGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 307 (706)
Q Consensus 228 gG~VLIP~~~~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~ 307 (706)
+|+||||+|++||+|||+.+|.++|+++.+.+|||+++ ++.+++.+|+.+++||+..+.+.+.....+||.+++++.+.
T Consensus 423 ~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v~ 501 (651)
T 3af5_A 423 GGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVA 501 (651)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEECC
T ss_pred CCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCceEEcC
Confidence 99999999999999999999999998877778999887 89999999999999999998877766678999999999999
Q ss_pred ChHHHhcC-C-CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhc
Q 005253 308 NKSELDNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366 (706)
Q Consensus 308 s~~e~~~~-~-~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~ 366 (706)
+.++..++ . ++|+||||+++||++|+++++|++|+++|+|+||||||+.+||+||+|..
T Consensus 502 ~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~ 562 (651)
T 3af5_A 502 NSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQS 562 (651)
T ss_dssp SHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHH
T ss_pred CHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHh
Confidence 87765554 2 78999999999999999999999999999999999999999999999874
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4.5e-50 Score=466.41 Aligned_cols=358 Identities=23% Similarity=0.355 Sum_probs=305.0
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCC--ccCC---ccccCCCCCccEEEcCCCchhhhccHHHHHHh
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD--PSLL---QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l---~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~ 77 (706)
..|++++|||+++.|+|||+|+.++.+||||||+..... ...+ ..+.....+||+|||||+|.||+||+|+|.+.
T Consensus 178 ~~m~i~~LG~~~evg~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~ 257 (636)
T 2ycb_A 178 DWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHY 257 (636)
T ss_dssp CCCEEEEEESSSSSSCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHT
T ss_pred CeEEEEEEecCCCCCCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHhc
Confidence 358999999988889999999999999999999975431 1122 22235678999999999999999999999873
Q ss_pred cCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCc
Q 005253 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 157 (706)
Q Consensus 78 ~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs 157 (706)
++++|||+|.++..+.+..+.++..........+.|+..++..+..++..+.+++++.+. ++++++++++||++|+
T Consensus 258 -~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~gH~~Gs 333 (636)
T 2ycb_A 258 -GYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIA---PDIRLTLHNAGHILGS 333 (636)
T ss_dssp -TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECCSSTTC
T ss_pred -CCCCeEEEcchHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEec---CCeEEEEeCCCCCCCc
Confidence 568999999999998776666553221111223467788888777788999999999994 4899999999999999
Q ss_pred eEEEEEeCCe--EEEEEecCCCCCccccCcccccCCCCCcEEeecccccccc--CCChhhHH-HHHHHHHHHHhcCCeEE
Q 005253 158 TVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVL 232 (706)
Q Consensus 158 ~~~~I~~~~~--~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~gG~VL 232 (706)
++|.++.++. +++||||++...++++.++... +.++|+||+|+||+... ++++.... .|.+.+.++++.+|+||
T Consensus 334 ~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vl 412 (636)
T 2ycb_A 334 AMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANR-FPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKIL 412 (636)
T ss_dssp EEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCC-CSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCeEEEEEECCCCCCcccccCCcccC-CCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999999888 9999999999888777654322 46899999999998876 77766666 89999999999999999
Q ss_pred EeecCchhHHHHHHHHHHHHHhcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHH
Q 005253 233 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311 (706)
Q Consensus 233 IP~~~~GR~~ELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e 311 (706)
||+|++||.|||+.+|.++|+++.+ ++|||+++ ++.+++..++.+++||+..+.+.+.....+||.+++++.+.+.++
T Consensus 413 Ip~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 491 (636)
T 2ycb_A 413 IPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDE 491 (636)
T ss_dssp EECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHH
T ss_pred EEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceEEeCCHHH
Confidence 9999999999999999999988766 78999876 888999999999999999988777666789999999999998877
Q ss_pred HhcCC-CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhc
Q 005253 312 LDNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366 (706)
Q Consensus 312 ~~~~~-~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~ 366 (706)
..+++ ++|+||||+++||++|+++++|.+|+++|+|+||||||+.+||+||+|..
T Consensus 492 ~~~l~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~ 547 (636)
T 2ycb_A 492 RREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQK 547 (636)
T ss_dssp HHHHHHSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHT
T ss_pred HHHhccCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhc
Confidence 77664 68999999999999999999999999999999999999999999999874
No 6
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=6.2e-50 Score=464.96 Aligned_cols=358 Identities=23% Similarity=0.356 Sum_probs=289.6
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCcccc---C-CCCCccEEEcCCCchhhhccHHHHHHhc
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS---K-VASTIDAVLLSHPDTLHLGALPYAMKQL 78 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~---~-~~~~IdaIlLTH~H~DHiGgLp~L~~~~ 78 (706)
..|++++|||+++.|+|||+|+.++.+||||||+........+..+. . ...+||+|||||+|.||+||+|+|.+.
T Consensus 182 ~~m~I~~LG~~~evg~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~- 260 (640)
T 2xr1_A 182 QWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY- 260 (640)
T ss_dssp CCCEEEEEECSSSSBCCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT-
T ss_pred CceEEEEEecCCCCCCcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHhc-
Confidence 35899999988888999999999999999999997532112222222 4 567899999999999999999999873
Q ss_pred CCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCce
Q 005253 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 158 (706)
Q Consensus 79 g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~ 158 (706)
++++|||+|.++..+.+..+.++............|+..++..+..++..+++++.+.+. ++++++++++||++|++
T Consensus 261 ~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~---gg~~v~~~~~GH~~Gs~ 337 (640)
T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIA---PDIKLTFHNAGHILGSA 337 (640)
T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECSSSTTCE
T ss_pred CCCCeEEECHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEec---CCEEEEEEcCCCCcCcE
Confidence 567999999999988776665543221111223467778888777788999999999994 38999999999999999
Q ss_pred EEEEEeCCe--EEEEEecCCCCCccccCcccccCCCCCcEEeecccccccc--CCChhhHH-HHHHHHHHHHhcCCeEEE
Q 005253 159 VWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLL 233 (706)
Q Consensus 159 ~~~I~~~~~--~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~gG~VLI 233 (706)
+|.++.++. +++||||++...++++.+.... +.++|+||+|+||+... ++++.... .|.+.+..+++.+|+|||
T Consensus 338 ~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlI 416 (640)
T 2xr1_A 338 ISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVI 416 (640)
T ss_dssp EEEEEETTTTEEEEECCSCCSSCCSSCCCCCCB-CSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEE
T ss_pred EEEEEECCceEEEEEECCCCCCCcccccccccc-CCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999998888 9999999999887777654322 46899999999999876 77766665 999999999999999999
Q ss_pred eecCchhHHHHHHHHHHHHHhcCC-CccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeEEcCChHHH
Q 005253 234 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312 (706)
Q Consensus 234 P~~~~GR~~ELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~ 312 (706)
|+|++||.||++.+|.++|+++.+ ++|||+++ ++.+++..|+.+++||+..+++.+.....+||.+++++.+.+.++.
T Consensus 417 p~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 495 (640)
T 2xr1_A 417 PAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEAR 495 (640)
T ss_dssp ECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHH
T ss_pred EecccchHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCceEEeCCHHHH
Confidence 999999999999999999998777 78999987 8999999999999999999877665557899999999999887776
Q ss_pred hcC-C-CCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHHhc
Q 005253 313 DNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366 (706)
Q Consensus 313 ~~~-~-~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl~~~L~~ 366 (706)
.++ . ++|+||||+++||++|+++++|++|+++|+|+||||||+.+||+||+|..
T Consensus 496 ~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~ 551 (640)
T 2xr1_A 496 QKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQK 551 (640)
T ss_dssp HHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHT
T ss_pred HHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhh
Confidence 665 3 78999999999999999999999999999999999999999999999874
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=100.00 E-value=6.6e-36 Score=341.32 Aligned_cols=308 Identities=15% Similarity=0.186 Sum_probs=243.0
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc--------cCCccccCCCCCccEEEcCCCchhhhccHHHH
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~--------~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L 74 (706)
..|++++|||.++.|+|||+++.++..||||||+...... ..+..+.....+|++|||||+|.||+||+|++
T Consensus 7 ~~i~i~~lGg~~eiG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l 86 (555)
T 3zq4_A 7 DQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYL 86 (555)
T ss_dssp CSEEEEEEESBSSSSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHH
T ss_pred CcEEEEEcCCCCccCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHH
Confidence 4699999999999999999999999999999998532211 11333445678999999999999999999999
Q ss_pred HHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCC-
Q 005253 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH- 153 (706)
Q Consensus 75 ~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH- 153 (706)
.+. +++|||+|.++..+.+..+.+. .. .+ ...+..+++++++.++ ++++++++++|
T Consensus 87 ~~~--~~~pIy~t~~t~~ll~~~l~~~----~~---~~----------~~~~~~v~~g~~~~ig----~~~v~~~~~~H~ 143 (555)
T 3zq4_A 87 LRQ--VNIPVYGGKLAIGLLRNKLEEH----GL---LR----------QTKLNIIGEDDIVKFR----KTAVSFFRTTHS 143 (555)
T ss_dssp HTT--CCCCEEECHHHHHHHHHHHHHH----ST---TT----------TCCEEECCTTCCEEET----TEEEEEEEEBCS
T ss_pred HHh--cCceEEECHHHHHHHHHHHHHc----Cc---cC----------CCceEEeCCCCEEEEC----CEEEEEEeCCCC
Confidence 875 4799999999988766544322 00 00 1256788999999995 89999999888
Q ss_pred CcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCC-----CCCcEEeeccccccccCCChhhHH-HHHHHHHHHHhc
Q 005253 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227 (706)
Q Consensus 154 ~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~ 227 (706)
++|+++|.|+.++.+++||||+.....+.....++..+ .++|+||+|+||+..... ...+ .+.+.+.+++++
T Consensus 144 ~pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT~~~~~~~--~~se~~v~~~i~~~~~~ 221 (555)
T 3zq4_A 144 IPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPEF--TMSERRVGESIHDIFRK 221 (555)
T ss_dssp SSSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECTTTTCCSC--CCCHHHHHHHHHHHHHH
T ss_pred CcCcEEEEEEECCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCcccCCCCC--CCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999887665443343333 368999999999985432 2223 778888888886
Q ss_pred -CCeEEEeecC--chhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCCCeE
Q 005253 228 -GGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 304 (706)
Q Consensus 228 -gG~VLIP~~~--~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~~~~ 304 (706)
+|+|+||+|+ +||+|+++.++.++ +.||++.++++.++++.|+.+ .|+. ++...
T Consensus 222 ~~grvii~~fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~----------------~p~~~ 278 (555)
T 3zq4_A 222 VDGRIIFATFASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN----------------CPKNT 278 (555)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC----------------CCGGG
T ss_pred CCCEEEEEEChhHHHHHHHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc-CCcc----------------CCccc
Confidence 8999999999 99999999998876 679999999999999999876 3332 12212
Q ss_pred EcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCC--------eEEEecCCCCCChhH
Q 005253 305 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN--------LVLFTERGQFGTLAR 362 (706)
Q Consensus 305 ~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N--------~Iiltg~~~~~Tl~~ 362 (706)
++ +.+++.++++++.||++|++ .|..+.+|.+++.++.| +|||++++.||+.++
T Consensus 279 ~v-~~~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~ 340 (555)
T 3zq4_A 279 FI-EHNEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTIS 340 (555)
T ss_dssp EE-CGGGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHH
T ss_pred Ee-CHHHHhhCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHH
Confidence 33 36677777566788888888 48889999999999887 999999999998643
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=100.00 E-value=2.8e-33 Score=320.87 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=230.4
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc--------cCCccccCCCCCccEEEcCCCchhhhccHHHH
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~--------~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L 74 (706)
..|++++|||+++.|+|||+|+.++..||||||+...... ..+..+.....+|++|||||+|.||+||+|+|
T Consensus 15 ~~~~i~~LGg~~eig~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L 94 (562)
T 3bk2_A 15 DHVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFL 94 (562)
T ss_dssp CCEEEEEEESBSBSSCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHH
T ss_pred CcEEEEEecCCCCcCCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHH
Confidence 4699999999998999999999999999999998532211 11223334567899999999999999999999
Q ss_pred HHhcC---CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC
Q 005253 75 MKQLG---LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA 151 (706)
Q Consensus 75 ~~~~g---~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a 151 (706)
.+.+. .++|||+|.++..+.+..+.+. .++. ....+..+++++++.++ ++++|+++++
T Consensus 95 ~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~--------~~~~--------~~~~~~~v~~g~~~~lg---~~~~v~~~~~ 155 (562)
T 3bk2_A 95 LPMIFGKESPVPIYGARLTLGLLRGKLEEF--------GLRP--------GAFNLKEISPDDRIQVG---RYFTLDLFRM 155 (562)
T ss_dssp HHHHHCSCCCSEEEEEHHHHHHHHHHHHHT--------TCCS--------TTSEEEEECTTCEEEET---TTEEEEEEEC
T ss_pred HHhhccccCCceEEeCHHHHHHHHHHHHHc--------CCCc--------CCceEEEECCCCEEEeC---CCEEEEEEEC
Confidence 87531 1689999999988765433221 0110 01356788999999996 3399999999
Q ss_pred CC-CcCceEEEEEeCCeEEEEEecCCCCCccccC-cccccCC-----CCCcEEeeccccccccCCChhhHHHHHHHHHHH
Q 005253 152 GH-LLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224 (706)
Q Consensus 152 GH-~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~t 224 (706)
+| ++|+++|.|+.++.+++||||+.....++.. ..++..+ .++|+||+|+||+........ ...+.+.+.++
T Consensus 156 ~H~~~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~~~-e~~v~~~l~~~ 234 (562)
T 3bk2_A 156 THSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPS-EMEIAKELDRV 234 (562)
T ss_dssp CCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCC-HHHHHHHHHHH
T ss_pred CCCCcccEEEEEEECCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecccCCCCCCCCCh-HHHHHHHHHHH
Confidence 99 6899999999999999999999987665432 1222211 368999999999864332211 12566666666
Q ss_pred Hh-cCCeEEEeecC--chhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhhchHHHHHHHhcCCCCCCCC
Q 005253 225 LR-AGGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 301 (706)
Q Consensus 225 l~-~gG~VLIP~~~--~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pf~~~ 301 (706)
++ .+|+|++|+|+ .+|+|+++.++.++ ..||++++....++++.|+.. +|+.. .++|
T Consensus 235 ~~~~~grvii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~l~~----------~~~~--- 294 (562)
T 3bk2_A 235 IGRAPGRVFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GYLKV----------KDRL--- 294 (562)
T ss_dssp HHHCSSCEEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TSCCC----------SSCC---
T ss_pred HHhCCCEEEEEEccccchHHHHHHHHHHHh------CCEEEEEChHHHHHHHHHHhc-CcccC----------CCCc---
Confidence 65 67999999999 89999999988765 468998787777888888864 66643 2343
Q ss_pred CeEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcC--------CCCCeEEEecCCCCCChhH
Q 005253 302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS--------DVKNLVLFTERGQFGTLAR 362 (706)
Q Consensus 302 ~~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~--------~~~N~Iiltg~~~~~Tl~~ 362 (706)
.+.+++.+++++++||+||+++ |.....+.+|+. +++|+|||++|+.+||.++
T Consensus 295 -----i~~~~~~~~~~~~~vi~~tg~~---ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~ 355 (562)
T 3bk2_A 295 -----YTLEEVKDLPDHQVLILATGSQ---GQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEA 355 (562)
T ss_dssp -----BCTGGGTTSCGGGEEEEECCTT---SCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHH
T ss_pred -----cCHHHHhcCCCCCEEEEEcCCC---chhHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEe
Confidence 1345666664456677777664 655666888875 7899999999999999654
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.94 E-value=1.8e-26 Score=256.37 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=203.3
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc----c---------CCcc---------------ccCCCCCc
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP----S---------LLQP---------------LSKVASTI 55 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~----~---------~l~~---------------l~~~~~~I 55 (706)
+|+|++|||+++.++|||+|+.++..||||||....... . .+.. +.....+|
T Consensus 6 ~m~i~~lG~~~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~i 85 (429)
T 2az4_A 6 KTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQH 85 (429)
T ss_dssp CEEEEEEECTTSSSCCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCSE
T ss_pred ceEEEEeeCCCccCCeEEEEEECCeEEEEecCCCCCcccCCCcchhhhccCCcccCCchhhhcccccccchhhhhccccC
Confidence 499999999888899999999999999999998642100 0 0111 13456789
Q ss_pred cEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEE
Q 005253 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135 (706)
Q Consensus 56 daIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~ 135 (706)
++|||||+|.||+||+|+|.+ ++|||++..+..+.+.+..+ . .+..+...+.......+..+++++.+
T Consensus 86 ~~v~lTH~H~DHiggl~~l~~----~~~iy~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (429)
T 2az4_A 86 TAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMILNSLNRK------G--DFLIPSPFEEKNFTREMIGLNKNDVI 153 (429)
T ss_dssp EEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHHHHHTTT------S--CSSCCCTTSCTTCCCCCEEECTTCEE
T ss_pred CEEEECCchHHHhCcHhHhcC----CCCEEECHHHHHHHHHHHHh------C--ccccccccccccccceEEEeCCCCeE
Confidence 999999999999999999864 68999999998765432110 0 00001111111112356788999999
Q ss_pred EecccCCCEEEEEEeCCC-CcCceEEEEEeCCeEEEEEecCCCCCccccCcccc-cCCCCCcEEeeccccccccC-----
Q 005253 136 HLSGKGEGIVVAPHVAGH-LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPAVLITDAYNALHNQ----- 208 (706)
Q Consensus 136 ~l~~~~~gl~it~~~aGH-~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l-~~l~~~d~LI~est~~~~~~----- 208 (706)
.++ +++|+++++|| ++|+++|+|+.++.+++||||+.......-....+ ....++|+||+||||+....
T Consensus 154 ~~g----~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~~ 229 (429)
T 2az4_A 154 KVG----EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDP 229 (429)
T ss_dssp EET----TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCCT
T ss_pred EEC----CEEEEEEECCCCChhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCcccccccc
Confidence 995 89999999999 79999999999999999999998654321000011 11247999999999976321
Q ss_pred -CChhhHH-HHHHHHHHHHhcC-CeEEEeecC---chhHHHHHHHHHHHHHhcCCCccEEEEcccHHHHHHHHHHhHhhh
Q 005253 209 -PPRQQRE-MFQDAISKTLRAG-GNVLLPVDS---AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWM 282 (706)
Q Consensus 209 -~~r~~~~-~l~~~I~~tl~~g-G~VLIP~~~---~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm 282 (706)
+.....+ .+.+.+.++++.+ ++++||.+. .+|+|++ +... +.|||+.++++.++++.+...+.++
T Consensus 230 ~~~~~~s~~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~---a~~~------gr~v~~~g~~~~~~~~~~~~~~~~~ 300 (429)
T 2az4_A 230 AQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKI---IEKS------PRTVVLEANMAALLLEVFGIEVRYY 300 (429)
T ss_dssp TBCCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHH---HHHC------SSEEEEEHHHHHHHHHHHCCCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHH---HHHh------CCEEEEEChhHHHHHhhccccCeeE
Confidence 1111122 6777777777654 558898887 6788887 2221 5799999999888887652222222
Q ss_pred chHHHHHHHhcCCCCCCCCCeEEcCChHHHhcCCCCCcEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCCh
Q 005253 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360 (706)
Q Consensus 283 ~~~~~~~~~~~~~~pf~~~~~~~~~s~~e~~~~~~~p~Vilas~~~l~~G~s~~~l~~~~~~~~N~Iiltg~~~~~Tl 360 (706)
..... ....+ +.- .+.+.+++.++ ++++|++ | .|.-. ++ .++++|||++++.+|+.
T Consensus 301 ~~~~~------~~~~~--~~~-~~~~~~~~~~~-~~~~ii~----~--~~~~~----~l--~~~~~vi~s~~~~~g~~ 356 (429)
T 2az4_A 301 YAESG------KIPEL--NPA-LEIPYDTLLKD-KTDYLWQ----V--VNQFD----NL--QEGSLYIHSDAQPLGDF 356 (429)
T ss_dssp CSSSS------CCTTS--CGG-GBCCHHHHHHC-SSSEEEE----C--CSCGG----GS--CTTCEEEEESCSSCSTT
T ss_pred ecccc------ccccc--Ccc-ceecHHHHhhC-CCcEEEE----e--cCcHH----hh--CCCCEEEEeCCCCCccc
Confidence 21000 00011 111 13356777776 5666555 2 34311 33 34689999999988884
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=218.61 Aligned_cols=210 Identities=17% Similarity=0.152 Sum_probs=151.1
Q ss_pred eEEEEEeecCCCC--CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNE--NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~--g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
.|+|....|+... .++++++..++..|+||+... ....+||+|||||+|.||+||++. .++
T Consensus 11 ~~~~~~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~------------~~~~~IdaI~lTH~H~DHiggl~~-----~~~ 73 (367)
T 4b87_A 11 NKKIPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQY------------GVVEGCTAYFLTHFHSDHYAGLSK-----HFT 73 (367)
T ss_dssp ------------CCCCCCCGGGBCTTSSEEESCCSS------------SSCTTCCEEECCCCCHHHHTTCST-----TCC
T ss_pred hhcccccccCCCCCCCCCceEEEECCCeEEEeCCCc------------CCccCCcEEEECcChHHHhCCccc-----ccC
Confidence 3666665554433 344455567889999998521 134689999999999999999993 357
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~ 161 (706)
+|||++..+..+.+..+. .. ...+..+++++++.++ +++|+++++||++|+++|+
T Consensus 74 ~pIy~s~~t~~ll~~~l~--------~~-------------~~~~~~l~~g~~~~ig----~~~v~~~~agH~~gs~~~~ 128 (367)
T 4b87_A 74 FPVYCSEITGNLLKNKLH--------VQ-------------EQYIHPLPLDTECIVN----GVKVVLLDANHCPGAVMIL 128 (367)
T ss_dssp SCEEECHHHHHHHHHHSC--------CC-------------GGGEEECCBTSCEEET----TEEEEEEECSSSTTCEEEE
T ss_pred CcEEECHHHHHHHHHHhc--------cc-------------cceEEEeCCCCEEEEC----CEEEEEEeCCCcCCcEEEE
Confidence 999999999876542210 00 0246788999999995 8999999999999999999
Q ss_pred EEe-CCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccccc--CCChhhHH-HHHHHHHHHHhcCCeE--EEee
Q 005253 162 ITK-DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNV--LLPV 235 (706)
Q Consensus 162 I~~-~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~gG~V--LIP~ 235 (706)
|+. ++.+|+||||++..++... ..+. ..++|+||+|+||+... +|++++.. .+++.+.++++.+|++ ++|+
T Consensus 129 i~~~~g~~il~tGD~~~~~~~~~--~~l~-~~~~D~Li~EsTy~~~~~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a 205 (367)
T 4b87_A 129 FYLPNGTVILHTGDFRADPSMER--SLLA-DQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGT 205 (367)
T ss_dssp EECTTSCEEEECCSCCCCGGGGG--SGGG-TSCCCEEEECCTTCSTTCCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEcCCCcEEEEecCcccCcccch--hhhc-cCCCCEEEEecccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 987 4557999999998775432 2221 14789999999999854 34555554 6888888888777764 5788
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCccEEEE
Q 005253 236 DSAGRVLELLLILEDYWAEHSLNYPIYFL 264 (706)
Q Consensus 236 ~~~GR~~ELl~~L~~~~~~~~l~~pI~~~ 264 (706)
+++||.|+++.++.++ +.+|++.
T Consensus 206 ~~igr~q~ll~ia~~~------g~ki~v~ 228 (367)
T 4b87_A 206 YSIGKEKVFLAIADVL------GSKVGMS 228 (367)
T ss_dssp SSSCCHHHHHHHHHHT------TCCEECC
T ss_pred chhHHHHHHHHHHHHh------CCEEEEe
Confidence 9999999999999886 6899864
No 11
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=211.51 Aligned_cols=181 Identities=18% Similarity=0.113 Sum_probs=137.2
Q ss_pred CCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCC
Q 005253 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132 (706)
Q Consensus 53 ~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~ 132 (706)
.+|++|||||+|.||+||+|+++ ++|||||..|..+.+..+.. . ...+..++++
T Consensus 23 ~~i~ai~lTH~H~DHiggl~~l~-----~~pVy~s~~t~~ll~~~l~~--------~-------------~~~~~~~~~~ 76 (336)
T 3zdk_A 23 GTARLFFLSHMHSDHTVGLSSTW-----ARPLYCSPITAHLLHRHLQV--------S-------------KQWIQALEVG 76 (336)
T ss_dssp CSSCEEECCCCCGGGSTTCSTTC-----CSCEEECHHHHHHHHHHHCC--------C-------------TTTEEECCTT
T ss_pred CCCCEEEECCChHHHHCchHHHc-----CCCEEecHHHHHHHHHhhhh--------c-------------ccceEecCCC
Confidence 48999999999999999999964 58999999998876532210 0 0135677888
Q ss_pred CEEEecc---cCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccC-
Q 005253 133 QNYHLSG---KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ- 208 (706)
Q Consensus 133 q~~~l~~---~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~- 208 (706)
+.+.+.+ ..++++|+++++||++|+++|+|+.++++|+||||++..++....+ .+....++|+||+|+||+....
T Consensus 77 ~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~-~l~~~~~vD~Li~DsT~~~~~~~ 155 (336)
T 3zdk_A 77 ESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-ALTLGKQIHTLYLDNTNCNPALV 155 (336)
T ss_dssp SEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEEECCSCCCCGGGGGCG-GGSSCCCCSEEEECCTBCCTTCC
T ss_pred CeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEEEeCCCCCCcccccch-hhhccCCccEEEEecCCCCCCCC
Confidence 8887621 1258999999999999999999999999999999999876543332 2223467899999999998654
Q ss_pred -CChhhHH-HHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHHhcCCCccEEEEcccH
Q 005253 209 -PPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVS 268 (706)
Q Consensus 209 -~~r~~~~-~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~~~~l~~pI~~~s~~a 268 (706)
+++.... .+.+.+.++ .+|+|+||+|++||.|+++.+...+ +.+|++.+...
T Consensus 156 ~pse~~v~~~l~~~i~~~--~~g~vii~~f~vgR~q~i~~~a~~~------grkV~v~gr~~ 209 (336)
T 3zdk_A 156 LPSRQEAAHQIVQLIRKH--PQHNIKIGLYSLGKESLLEQLALEF------QTWVVLSPRRL 209 (336)
T ss_dssp CCCHHHHHHHHHHHHHTC--TTSEEEEEECSSSCHHHHHHHHHHH------TCCEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCcEEEeecchHHHHHHHHHHHHc------CCEEEEEhHHH
Confidence 3443333 455554443 3679999999999999999988877 68999865443
No 12
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.77 E-value=2.3e-18 Score=178.65 Aligned_cols=167 Identities=18% Similarity=0.153 Sum_probs=124.8
Q ss_pred eEEEEEeecCCCC-----CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHh-
Q 005253 4 SVQVTPLSGVFNE-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ- 77 (706)
Q Consensus 4 ~m~~t~LgGa~~~-----g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~- 77 (706)
.|++++||.++.. +.+||+|+.++..||||||... ...+... ....+||+|||||.|.||+||++.+.+.
T Consensus 24 ~m~i~~LG~g~~~p~~~~~~~~~li~~~~~~iLiD~G~~~---~~~l~~~-~~~~~i~~v~iTH~H~DH~~gl~~l~~~~ 99 (268)
T 1zkp_A 24 AMKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGV---LAQLQKY-ITPSDIDAVVLSHYHHDHVADIGVLQYAR 99 (268)
T ss_dssp CEEEEEEECBSSSCCTTCCBSEEEEEETTEEEEECCCTTH---HHHHTTT-CCGGGCCEEECSCCCHHHHTTHHHHHHHH
T ss_pred CcEEEEEeCCCCcCCCCCCccEEEEEECCcEEEEECCHHH---HHHHHHh-CCcccCCEEEEecCCchhhCCHHHHHHHH
Confidence 5999999865533 5899999999999999999742 1112222 2456899999999999999999988763
Q ss_pred -c-------CCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE
Q 005253 78 -L-------GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH 149 (706)
Q Consensus 78 -~-------g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~ 149 (706)
+ ...++||++..+.+..+... ++ ....+..+..++.+.++ +++|+++
T Consensus 100 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~------------~~---------~~~~~~~~~~g~~~~~g----~~~v~~~ 154 (268)
T 1zkp_A 100 LITSATKGQLPELPIYGHTFDENGFHSLT------------HE---------PHTKGIPYNPEETLQIG----PFSISFL 154 (268)
T ss_dssp HHHHHHHCCCCCEEEEECSSSHHHHHTTC------------BT---------TTEEEEECCTTSCEEET----TEEEEEE
T ss_pred HhcccccCCCCceEEEeCccHHHHHHhcc------------cC---------CccceEEecCCCeEEEC----CEEEEEE
Confidence 1 22579999988765432110 00 01245667778888885 8999999
Q ss_pred eCCCCcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccc
Q 005253 150 VAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 150 ~aGH~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
++.|++|+++|+|+.++.+++|+||+...++. .+.+.++|+||+|+++..
T Consensus 155 ~~~H~~~~~~~~i~~~~~~i~~~GD~~~~~~~------~~~~~~~d~li~e~~~~~ 204 (268)
T 1zkp_A 155 KTVHPVTCFAMRITAGNDIVVYSADSSYIPEF------IPFTKDADLFICECNMYA 204 (268)
T ss_dssp ECCSSSCCEEEEEEETTEEEEECCSCCCCTTH------HHHHTTCSEEEEECCBCT
T ss_pred ECCCCCCceEEEEEECCeEEEEeCCCCCCHHH------HHHHcCCCEEEEECCCCc
Confidence 99999999999999999999999999875431 111357899999998864
No 13
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.76 E-value=3.2e-18 Score=176.87 Aligned_cols=167 Identities=19% Similarity=0.151 Sum_probs=123.0
Q ss_pred eEEEEEeecCCCC-----------------------CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEc
Q 005253 4 SVQVTPLSGVFNE-----------------------NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60 (706)
Q Consensus 4 ~m~~t~LgGa~~~-----------------------g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlL 60 (706)
+|+|++||.+.+. ..+||+|+.++..||||||... . ...+ ...+||+|||
T Consensus 2 ~~~~~~LGtg~~~g~P~~~c~C~~C~~ar~~~~~~r~~s~~li~~~~~~iLiD~G~~~---~--~~~~--~~~~id~Ili 74 (258)
T 3g1p_A 2 SLTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHD---L--ADRW--SPGSFQQFLL 74 (258)
T ss_dssp CEEEEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEETTEEEEECCCCTT---H--HHHC--CTTSSCEEEC
T ss_pred ceEEEEEEeCCCCCCccCCcCChhhhhhhhCccccccCceEEEEECCcEEEEECCchH---H--Hhhc--CcccCCEEEE
Confidence 4999999866432 5789999999999999999421 1 1111 2358999999
Q ss_pred CCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEeccc
Q 005253 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGK 140 (706)
Q Consensus 61 TH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~ 140 (706)
||.|.||++|++.+....+..++||++..+..+...+ . . +. .......+..++.+.++
T Consensus 75 TH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~-----~----~---~~--------~~~~~~~~~~g~~~~~g-- 132 (258)
T 3g1p_A 75 THYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLF-----K----H---PG--------LLDFSHTVEPFVVFDLQ-- 132 (258)
T ss_dssp SCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCSTTTT-----T----S---CT--------TEEEEEECCTTCCEEET--
T ss_pred ccCchhHhCCHHHHhccCCCCeEEEeChhhhhHHHHh-----c----C---CC--------ccccccccCCCCeEEEC--
Confidence 9999999999998864333358899998876321111 0 0 00 00112467888999985
Q ss_pred CCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecCCCCCccccCcccccCC--CCCcEEeeccccccc
Q 005253 141 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALH 206 (706)
Q Consensus 141 ~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l--~~~d~LI~est~~~~ 206 (706)
+++|+++++.|++|+++|+|+.++.+++|+||+...++..+ +.+ .++|+||+|++|...
T Consensus 133 --~~~v~~~~~~H~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~-----~~l~~~~~Dlli~e~t~~~~ 193 (258)
T 3g1p_A 133 --GLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTL-----KFLRNNQPQVMVMDCSHPPR 193 (258)
T ss_dssp --TEEEEEEECCSSSCCEEEEEECSSCEEEEECSCSSCCHHHH-----HHHHHTCCSEEEEECCBSSC
T ss_pred --CEEEEEEECCCCCCceEEEEEeCCcEEEEECCCCCCCHHHH-----HHHHhCCCCEEEEeCCCCCc
Confidence 89999999999999999999998999999999997664322 122 478999999988653
No 14
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.76 E-value=2.7e-18 Score=181.39 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=124.7
Q ss_pred EEEEEeecCCCC-----CCeEEEEEE----CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHH
Q 005253 5 VQVTPLSGVFNE-----NPLSYLVSI----DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (706)
Q Consensus 5 m~~t~LgGa~~~-----g~sc~LL~~----~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~ 75 (706)
|++++||++++. +.+||+|+. ++..||||||... ...+...+....+|++|||||.|.||++|++.+.
T Consensus 2 m~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~---~~~l~~~~~~~~~i~~i~iTH~H~DH~~gl~~l~ 78 (306)
T 2cbn_A 2 MNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLL 78 (306)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTH---HHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHH
T ss_pred eEEEEEEcCCCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHH---HHHHHHhCCCHHHcCEEEEecCCchhhCChHHHH
Confidence 789999876654 469999998 8899999999742 1223333334678999999999999999999887
Q ss_pred Hhc---C--CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe
Q 005253 76 KQL---G--LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV 150 (706)
Q Consensus 76 ~~~---g--~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~ 150 (706)
... + ..++||++..+..+.+..+... .. ...|. .++..+..++.+.++ +++|++++
T Consensus 79 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~----~~---~~~~~--------~~~~~~~~g~~~~~~----~~~v~~~~ 139 (306)
T 2cbn_A 79 CSRSMSGIIQPLTIYGPQGIREFVETALRIS----GS---WTDYP--------LEIVEIGAGEILDDG----LRKVTAYP 139 (306)
T ss_dssp HHHHHTTCCSCEEEEESTTHHHHHHHHHHHT----TC---CCSSC--------EEEEECCSEEEEECS----SEEEEEEE
T ss_pred HHHHhcCCCCCeEEEcCccHHHHHHHHHHhh----cc---CCCce--------EEEEEcCCCcEeecC----CEEEEEEE
Confidence 632 1 2568999988876544322110 00 00010 134566777778774 89999999
Q ss_pred CCCCcCceEEEEEe--------------------------------------------------CCeEEEEEecCCCCCc
Q 005253 151 AGHLLGGTVWKITK--------------------------------------------------DGEDVIYAVDYNRRKE 180 (706)
Q Consensus 151 aGH~lGs~~~~I~~--------------------------------------------------~~~~IlytGD~~~~~~ 180 (706)
.-|+.++.+|+++. ++.+|+|+||++..+.
T Consensus 140 ~~H~~~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~sgDt~~~~~ 219 (306)
T 2cbn_A 140 LEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA 219 (306)
T ss_dssp CBSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCST
T ss_pred ccCCCCccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEEeCCCCCHHH
Confidence 99999999999974 4678999999997652
Q ss_pred cccCcccccCCCCCcEEeecccccc
Q 005253 181 KHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 181 ~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
. .+.+.++|+||+|++|..
T Consensus 220 -~-----~~~~~~~D~li~E~t~~~ 238 (306)
T 2cbn_A 220 -A-----LDLAKGVDVMVHEATLDI 238 (306)
T ss_dssp -H-----HHHHTTCSEEEEECCBCG
T ss_pred -H-----HHHhcCCCEEEEECcCCh
Confidence 1 122357999999999875
No 15
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.75 E-value=2.9e-18 Score=182.51 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=123.9
Q ss_pred EEEEEeecCCCC-----CCeEEEEEE---CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHH
Q 005253 5 VQVTPLSGVFNE-----NPLSYLVSI---DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (706)
Q Consensus 5 m~~t~LgGa~~~-----g~sc~LL~~---~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~ 76 (706)
|++++||++++. +.+||+|+. ++..+|||||... ...+...+....+|++|||||.|.||++|++.+..
T Consensus 1 M~i~~LGtg~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~---~~~l~~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~ 77 (320)
T 1y44_A 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEAT---QHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLG 77 (320)
T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTH---HHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHH
T ss_pred CEEEEEecCCCCCCccCCCCEEEEEEecCCCcEEEEECCHHH---HHHHHHcCCCHHHcCEEEEeCCChhhhCCHHHHHH
Confidence 589999876653 579999999 8999999999742 11222223345689999999999999999999876
Q ss_pred hc---C--CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC
Q 005253 77 QL---G--LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA 151 (706)
Q Consensus 77 ~~---g--~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a 151 (706)
.+ + ..++||++..+..+.+..+.. ... ...|. .++..+..++.+.++ +++|++++.
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~----~~~---~~~~~--------~~~~~~~~g~~~~~~----~~~v~~~p~ 138 (320)
T 1y44_A 78 SRSFQGGEDELTVYGPKGIKAFIETSLAV----TKT---HLTYP--------LAIQEIEEGIVFEDD----QFIVTAVSV 138 (320)
T ss_dssp HHHHTTCCSCEEEEESTTHHHHHHHHHHH----TTC---CCSSC--------EEEEECCSEEEEECS----SEEEEEEEC
T ss_pred HHHhcCCCCCEEEEeCHHHHHHHHHHHHh----hcc---CCCCc--------eEEEEcCCCceEecC----CEEEEEEEc
Confidence 32 1 257899998887654422210 000 00010 134566777778774 799999999
Q ss_pred CCCcCceEEEEEe--------------------------------------------------CCeEEEEEecCCCCCcc
Q 005253 152 GHLLGGTVWKITK--------------------------------------------------DGEDVIYAVDYNRRKEK 181 (706)
Q Consensus 152 GH~lGs~~~~I~~--------------------------------------------------~~~~IlytGD~~~~~~~ 181 (706)
+|++++++|+++. ++.+|+|+||++..+.
T Consensus 139 ~H~~~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g~~i~~sgDt~~~~~- 217 (320)
T 1y44_A 139 IHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDK- 217 (320)
T ss_dssp BSSSSBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEECCSCBCCHH-
T ss_pred cCCCCcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCCCEEEEeCCCCCHHH-
Confidence 9999999999974 4678999999987652
Q ss_pred ccCcccccCCCCCcEEeecccccc
Q 005253 182 HLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 182 ~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
+ .+.+.++|+||+|++|..
T Consensus 218 ~-----~~~~~~~D~li~E~t~~~ 236 (320)
T 1y44_A 218 L-----KELARDCDVMVHEATFAK 236 (320)
T ss_dssp H-----HHHTTTCSEEEEECCBCT
T ss_pred H-----HHHhCCCCEEEEeccCCc
Confidence 1 122457999999999875
No 16
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=174.23 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=129.7
Q ss_pred EEEEEeecCCC-----CCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 5 VQVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 5 m~~t~LgGa~~-----~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
|++++||.++. .+.+||+|+.++..+|||||... ...+........+||+|||||.|.||++|++.|...++
T Consensus 1 M~l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~---~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~ 77 (368)
T 3zwf_A 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGT---QTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTIS 77 (368)
T ss_dssp CEEEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTH---HHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhH---HHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhh
Confidence 68898875443 26899999999999999999532 11222223344689999999999999999998876431
Q ss_pred ---------CCCCeeecchhhhhchhhhHHHHHhhhccCCCCC-----CC------HHhHHHhhc------ccEEecCCC
Q 005253 80 ---------LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL-----FT------LDDIDSAFQ------SVTRLTYSQ 133 (706)
Q Consensus 80 ---------~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~-----~~------~~dv~~~~~------~i~~v~y~q 133 (706)
...+||++..+..+.+..+.-. ...-.++. .. ..+. ..+. .......++
T Consensus 78 ~~~~~~~~~~~l~iygp~~~~~~l~~~l~~~----~~~~~~~~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 152 (368)
T 3zwf_A 78 LQSGSMVSKQPIEIYGPVGLRDFIWRTMELS----HTELVFHYVVHELVPTADQCPAEEL-KEFAHVNRADSPPKEEQGR 152 (368)
T ss_dssp HHC------CCEEEEEETTHHHHHHHHHHHT----TCCCSSCEEEEEECCCGGGSCC--------------------CCC
T ss_pred hccccccCCCCeEEEEcHHHHHHHHHHHHhh----CcCCCceEEEEEeecCccccccccc-cccccccccccCccccccc
Confidence 1578999988877654332111 00000000 00 0000 0000 000001122
Q ss_pred EEEec--------ccCCCEEEEEEeCCCCcCceEEEEEeC----------------------------------------
Q 005253 134 NYHLS--------GKGEGIVVAPHVAGHLLGGTVWKITKD---------------------------------------- 165 (706)
Q Consensus 134 ~~~l~--------~~~~gl~it~~~aGH~lGs~~~~I~~~---------------------------------------- 165 (706)
.+.+. -..++++|++++..|...+++|+|+..
T Consensus 153 ~i~~~~~~~~~~~~~~~~~~V~a~~~~H~vp~~gy~i~e~~~~g~~~~ek~~~~gip~G~~~~~Lk~G~~v~~~dG~~i~ 232 (368)
T 3zwf_A 153 TILLDSEENSYLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTIS 232 (368)
T ss_dssp EECCBTTTTBEEEEECSSEEEEEEEEESSSCEEEEEEEECC---------------------------------------
T ss_pred ccccccccCceeEEeCCCEEEEEEeccCCCceEEEEEEecCCcCccCHHHHHHcCCCchHHHHhcCCCCeEEecCCEEEE
Confidence 22210 012589999999999999999999753
Q ss_pred ----------CeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhH-H-HHHHHHHHHHhcCCeEEE
Q 005253 166 ----------GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-E-MFQDAISKTLRAGGNVLL 233 (706)
Q Consensus 166 ----------~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~-~-~l~~~I~~tl~~gG~VLI 233 (706)
+.+|+|+||+..... ....+.+..+|+||+|++|........... . ...+.+.-+...+-..||
T Consensus 233 ~~~v~~~~~~g~~v~~~GDT~~~~~----~~~~~~~~~~Dlli~Eat~~~~~~~~a~~~~H~t~~~A~~~a~~~~~k~li 308 (368)
T 3zwf_A 233 PQDVLKKPIVGRKICILGDCSGVVG----DGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATFAKLCRAKRLV 308 (368)
T ss_dssp ---------CCCEEEEECSCSEECS----SHHHHHTTTCSEEEEECCSCGGGHHHHHHTTCCCHHHHHHHHHHTTCSEEE
T ss_pred hHHhccccccceEEEEEecCCcccc----hhHHHHhcCCCEEEEecCCChHHHhhhhcCCCCCHHHHHHHHHHcCCCEEE
Confidence 678999999875110 011122457899999999876421100000 0 112233333334556677
Q ss_pred eecCchh
Q 005253 234 PVDSAGR 240 (706)
Q Consensus 234 P~~~~GR 240 (706)
|+.-+-|
T Consensus 309 l~H~s~r 315 (368)
T 3zwf_A 309 LTHFSQR 315 (368)
T ss_dssp EECBCCC
T ss_pred EEeeCcc
Confidence 7766555
No 17
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.67 E-value=6.4e-16 Score=160.66 Aligned_cols=160 Identities=16% Similarity=0.041 Sum_probs=107.5
Q ss_pred CeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHH----hcC---CCCCeeecchh
Q 005253 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK----QLG---LSAPVFSTEPV 90 (706)
Q Consensus 18 ~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~----~~g---~~~~VyaT~pt 90 (706)
.+|+++ ++..||||||.... ..+.....+|++|||||.|.||++|++.|.. .++ ..++||++..+
T Consensus 12 ~~~~~i--~~~~iLiD~G~~~~------~~l~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~ 83 (280)
T 2e7y_A 12 STWIYY--SPERILFDAGEGVS------TTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGN 83 (280)
T ss_dssp EEEEEE--GGGTEEEEECTTHH------HHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTC
T ss_pred eEEEEE--CCcEEEEECCcchH------HHhccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccH
Confidence 455555 67899999996421 1233345689999999999999999999852 122 24799999887
Q ss_pred hhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEeccc-CCCEEEEEEeCCCCcC--ceEEEEEe---
Q 005253 91 YRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGK-GEGIVVAPHVAGHLLG--GTVWKITK--- 164 (706)
Q Consensus 91 ~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~-~~gl~it~~~aGH~lG--s~~~~I~~--- 164 (706)
. +.+..+.. +... . ... . ....+..++.++.+.+++. ..+++|+++++||++| +++|+|+.
T Consensus 84 ~-~l~~~~~~-~~~~-~-~~~-~--------~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~ 150 (280)
T 2e7y_A 84 R-AVEEYTEF-IKRA-N-PDL-R--------FSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRR 150 (280)
T ss_dssp H-HHHHHHHH-HHHH-C-GGG-T--------TTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEE
T ss_pred H-HHHHHHHH-Hhhc-c-cCC-C--------CceEEEEcCCCCEEEeCCcccCCEEEEEEEccCCCCCceEEEEEEEccc
Confidence 6 54322211 1100 0 000 0 0024567888999988510 0079999999999999 99999963
Q ss_pred ------------------------------CCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccc
Q 005253 165 ------------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (706)
Q Consensus 165 ------------------------------~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~ 206 (706)
++.+|+|+||+... + .+.+.++|+||+|+++...
T Consensus 151 ~l~~~~~g~~~~~~~~l~~~~g~~~~~~~~~g~~i~ysgDt~~~----~----~~~~~~~d~li~e~t~~~~ 214 (280)
T 2e7y_A 151 KLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLAL----D----PEEIRGTELLIHECTFLDA 214 (280)
T ss_dssp EECGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSSC----C----HHHHTTCSCEEEECCBC--
T ss_pred ccCHhhcCCCHHHHHHHHhhcCCceecCCccCCEEEEECCCChH----H----HHhhcCCCEEEEeCCcCCh
Confidence 34689999999876 1 1123578999999998653
No 18
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.65 E-value=5.2e-16 Score=163.35 Aligned_cols=179 Identities=19% Similarity=0.196 Sum_probs=118.9
Q ss_pred CeEEEEEeecCCCCC---------------------CeEEEEEE--C-C--eEEEEeCCCCCCCCccCCccccCCCCCcc
Q 005253 3 TSVQVTPLSGVFNEN---------------------PLSYLVSI--D-G--FNFLIDCGWNDHFDPSLLQPLSKVASTID 56 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g---------------------~sc~LL~~--~-~--~~ILiDcG~~~~~~~~~l~~l~~~~~~Id 56 (706)
..|++++||.+.+.| .+|++|+. + + .++|||||... ...+. .....+||
T Consensus 27 ~~m~v~~LG~g~~~G~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~g~~~~iLID~G~~~---~~~l~--~~~~~~id 101 (293)
T 3md7_A 27 NCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDF---RMQMI--DSGVHMLD 101 (293)
T ss_dssp SEEEEEEEECBCTTCBSCTTCCCTTSCTTCGGGCBCBCEEEEEEECTTCCEEEEEECCCTTH---HHHHH--HHTCCCCS
T ss_pred CcEEEEEEeecCCCCcccCCCCCccCCccCCCCcccccEEEEEecCCCCceeEEEEECCccH---HHHHH--hcCCCccc
Confidence 469999998554322 38899996 4 4 79999999642 11111 12346899
Q ss_pred EEEcCCCchhhhccHHHHHHhc---CCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCC
Q 005253 57 AVLLSHPDTLHLGALPYAMKQL---GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133 (706)
Q Consensus 57 aIlLTH~H~DHiGgLp~L~~~~---g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q 133 (706)
+|||||.|.||++|++.|...+ ...++||++..+.+..+..+...+. .+....++ ....+..+..++
T Consensus 102 ~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~-~~~~~~~~---------~~~~~~~l~~g~ 171 (293)
T 3md7_A 102 AAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFE-TPVGSSYP---------PILSMHDIAPET 171 (293)
T ss_dssp EEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTS-CCTTCCCC---------CCEEEEECCTTC
T ss_pred EEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhc-cccccCCC---------CceEEEEcCCCC
Confidence 9999999999999999775421 3478999998887654432211110 00000000 012456778889
Q ss_pred EEEecccCCCEEEEEEeCCCC-cCceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccc
Q 005253 134 NYHLSGKGEGIVVAPHVAGHL-LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 134 ~~~l~~~~~gl~it~~~aGH~-lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
.+.+++.+.+++|+++++.|. .++++|+|+ +++|+||+....+.. .+.+.++|+||+|+++..
T Consensus 172 ~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~----~~~y~gDt~~~~~~~-----~~~~~~~Dlli~e~~~~~ 235 (293)
T 3md7_A 172 PFSIEGAGGAIRFEPFSQVHGDIESLGFRIG----SVVYCTDVSAFPEQS-----LQYIKDADVLIIGALQYR 235 (293)
T ss_dssp CEEECCTTCCEEEEEEEEEETTEEEEEEEET----TEEEECSCSBCCGGG-----HHHHTTCSEEEEECCCSS
T ss_pred cEEECCCCCcEEEEEEEecCCCCCEEEEEEe----EEEEECCCCCCCHHH-----HHHhcCCCEEEEeCccCC
Confidence 999862112299999999998 699999995 899999998544322 222457899999997543
No 19
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.62 E-value=1.2e-14 Score=148.17 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=122.5
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCC
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~ 82 (706)
..|+++.| |.+||+|+.++.+||||||.... .+ ....++|+|||||.|.||+ +++.+.......+
T Consensus 28 ~~~~it~l------g~s~~li~~~~~~iliDpg~~~~----~~----~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~ 92 (235)
T 3kl7_A 28 KELTITFI------KHGSLMLTYDNHSIQVDPVSEYA----DY----TTFPKADIILITHEHGDHL-DPKAIQAVEKSDT 92 (235)
T ss_dssp CEEEEEEE------ETTEEEEEETTEEEEESCCTTTC----CT----TSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTC
T ss_pred CCeEEEEE------cceEEEEEECCEEEEECCCCCcc----ch----hhCCCCCEEEECCCccccC-CHHHHHHhhcCCC
Confidence 45899988 46899999999999999997532 11 1235899999999999999 5665554223478
Q ss_pred CeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCC-EEEecccCCCEEEEEEeCCCCcC-----
Q 005253 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ-NYHLSGKGEGIVVAPHVAGHLLG----- 156 (706)
Q Consensus 83 ~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q-~~~l~~~~~gl~it~~~aGH~lG----- 156 (706)
+||++..+.... .+...+..++ .+.++ +++|+++++-|.++
T Consensus 93 ~v~~~~~~~~~l-----------------------------~~~~~l~~g~~~~~~g----~~~i~~~p~~H~~~~~~~~ 139 (235)
T 3kl7_A 93 EIIANENSQKKL-----------------------------GKGKVLKNGDTDTSIS----YMKIEAVPAYNTTPGRDKY 139 (235)
T ss_dssp EEEECHHHHHHH-----------------------------TCSEECCTTCEECCST----TCEEEEEECCCCSTTGGGT
T ss_pred EEEEcHHHHHHh-----------------------------cCcEEecCCCEEEEEC----CEEEEEEEeecCCCccccc
Confidence 999987665421 1235677788 88875 89999999888763
Q ss_pred -----ceEEEEEeCCeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCCeE
Q 005253 157 -----GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 231 (706)
Q Consensus 157 -----s~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~V 231 (706)
+++|+|+.++.+++|+||+...++ +..+.++|++++++.... +. ..++..+.+.. -+.+.
T Consensus 140 ~~~~~~~g~~i~~~g~~i~~~GDt~~~~~-------~~~l~~~Dv~il~~~~~~--h~---~~~ea~~~~~~---l~~k~ 204 (235)
T 3kl7_A 140 HPRHRDNGYILTFDGLRVYIAGDTEDIPE-------MKDLKDIDIAFLPVNQPY--TM---TVSQAAKAARM---FSPKI 204 (235)
T ss_dssp SCTTTSEEEEEEETTEEEEECCSCCSCGG-------GGGCCSCSEEEEECCTTT--SC---CHHHHHHHHHH---HCCSE
T ss_pred cCCCCceEEEEEeCCeEEEEECCCCchhh-------HHhhcCCCEEEECCCCCc--cc---CHHHHHHHHHH---cCCCE
Confidence 489999999999999999988753 223567899999885211 11 11122233322 25567
Q ss_pred EEeecCch
Q 005253 232 LLPVDSAG 239 (706)
Q Consensus 232 LIP~~~~G 239 (706)
+||+.-..
T Consensus 205 vip~H~~~ 212 (235)
T 3kl7_A 205 LYPYHYGD 212 (235)
T ss_dssp EEEESCTT
T ss_pred EEEEcCCC
Confidence 88877643
No 20
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.61 E-value=7.8e-16 Score=164.06 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=112.9
Q ss_pred CCeEEEEEECCeE-EEEeCCCCCCCCccCCc----cccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhh
Q 005253 17 NPLSYLVSIDGFN-FLIDCGWNDHFDPSLLQ----PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVY 91 (706)
Q Consensus 17 g~sc~LL~~~~~~-ILiDcG~~~~~~~~~l~----~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~ 91 (706)
.++|++|+.++.+ ||||||.+......... ..+....+||+|||||.|.||++|++.|.+ ...++||++..+.
T Consensus 40 ~~ss~li~~~~~~~iLiD~G~~~~~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~--~~~~~vy~~~~~~ 117 (321)
T 3jxp_A 40 TQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE--GCPHQVWCTDMVH 117 (321)
T ss_dssp CBCEEEEESSSSSEEEECCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG--GCCEEEEECHHHH
T ss_pred cceEEEEEeCCceEEEEeCCchHHHHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHh--cCCCeEEECHHHH
Confidence 5789999998875 99999964210000011 011245789999999999999999999964 3468999999987
Q ss_pred hhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCC--------CCc-----Cce
Q 005253 92 RLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG--------HLL-----GGT 158 (706)
Q Consensus 92 ~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aG--------H~l-----Gs~ 158 (706)
+..+..+. .+... . ..++ --.+..+..++++.+.+ .++++|++++.- |.. .++
T Consensus 118 ~~l~~~~~-~f~~~-~-~~~~----------~i~~~~i~~g~~~~i~~-~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~ 183 (321)
T 3jxp_A 118 QDLTTGFP-LFNML-S-HWNG----------GLQWNRIELEGSFVIDA-CPNLKFTPFPLRSAAPPYSPHRFDPHPGDNL 183 (321)
T ss_dssp HHTTTTSC-HHHHH-T-TTTT----------CEEEEECCSSSCEECTT-STTEEEEEEEECCCCCTTCTTTTSCCTTSEE
T ss_pred HHHHhhCc-ccccc-c-cccC----------ceeEEEcCCCCeEEecc-CCCeEEEEEEecCCccccccccccccCCCcE
Confidence 76542221 11100 0 0000 01345677788888811 138999999986 653 678
Q ss_pred EEEEE--eCCeEEEEEecCCCCCccccCcccccCCCCCcEEeecccccc
Q 005253 159 VWKIT--KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (706)
Q Consensus 159 ~~~I~--~~~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~ 205 (706)
+|+|+ .++.+++|+||+....+.+ ++.+.++|+||+|+++..
T Consensus 184 Gy~i~~~~~g~~i~y~~Dt~~~~~~~-----~~~~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 184 GLMVEDTRTGGKLFYAPGLGQVDEKL-----LAMMHGADCLLVDGTLWE 227 (321)
T ss_dssp EEEEEETTTCCEEEEESSCCCCCHHH-----HHHHHHCSEEEEECCCSS
T ss_pred EEEEEecCCCcEEEEECCCCCCCHHH-----HHHhcCCCEEEEeCCCCC
Confidence 99999 7889999999998654321 222456899999997644
No 21
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.54 E-value=2e-14 Score=149.21 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=102.6
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC---------------------c---cCCccccCCCCCccEEEcCCCchhhhccHH
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD---------------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGALP 72 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~---------------------~---~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp 72 (706)
..+||||+.++..||||||...... . ..+..++..+.+|++||+||.|.||+||++
T Consensus 42 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~ 121 (276)
T 2r2d_A 42 PVSAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVE 121 (276)
T ss_dssp EEEEEEEECSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTTGG
T ss_pred eeEEEEEECCCCCEEEECCCCcccccccccccHhHHhhcCCCCChhhCHHHHHHHcCCCHHHCCEEEecCcccccCCChh
Confidence 4589999999999999999865431 0 012233345568999999999999999998
Q ss_pred HHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHh---hcccEEec-CCCEEEecccCCCEEEEE
Q 005253 73 YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSA---FQSVTRLT-YSQNYHLSGKGEGIVVAP 148 (706)
Q Consensus 73 ~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~---~~~i~~v~-y~q~~~l~~~~~gl~it~ 148 (706)
.+ .+++||++..+........ ... .....|...++... ..++..++ +++.+.+. +++++.+
T Consensus 122 ~~-----~~~~v~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~---~~~~v~~ 186 (276)
T 2r2d_A 122 YF-----GKSRLIAHEDEFATAVRYF----ATG---DHSSPYIVKDIEAWLATPRNWDLVGRDERERELA---PGVNLLN 186 (276)
T ss_dssp GC-----SSSEEEEEHHHHHHHHHHH----HTT---CCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEE---TTEEEEE
T ss_pred hC-----CCCEEEECHHHHHHHhccc----ccc---ccccccchHHhhhhccccccceeccCCCceeEec---CCEEEEe
Confidence 76 2689999988765432110 000 00111222333321 12455676 57888886 4799998
Q ss_pred EeCCCCcCceEEEEEeCC-eEEEEEecCCCCC
Q 005253 149 HVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179 (706)
Q Consensus 149 ~~aGH~lGs~~~~I~~~~-~~IlytGD~~~~~ 179 (706)
..+||++|++++++..++ .+++|+||+.+..
T Consensus 187 ~~pgHt~g~~~~~~~~~~~~~vl~~GD~~~~~ 218 (276)
T 2r2d_A 187 FGTGHASGMLGLAVRLEKQPGFLLVSDACYTA 218 (276)
T ss_dssp EESSSSSSEEEEEEECSSSCEEEEEETTSCCH
T ss_pred CCCCCCceeEEEEEEcCCCceEEEEechhhhH
Confidence 834999999999998876 8999999998764
No 22
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.53 E-value=4.8e-14 Score=146.04 Aligned_cols=191 Identities=16% Similarity=0.068 Sum_probs=123.4
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCcc------------CCccccCC----CCCccEEEcCCCchh
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS------------LLQPLSKV----ASTIDAVLLSHPDTL 66 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~------------~l~~l~~~----~~~IdaIlLTH~H~D 66 (706)
.+|++|.| |.+|++|+.++.+||+||++....... .+..+... +.++|+|||||.|.|
T Consensus 3 ~~m~it~l------Gha~~li~~~g~~iLiDp~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~iliTH~H~D 76 (264)
T 3rpc_A 3 AMTQYTHI------RNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLD 76 (264)
T ss_dssp CCCEEEEE------ETTEEEEEETTEEEEESCCCCCTTCBCCCTTBTTTTSCBSSSCCSSCHHHHHTTCCEEECSCCCGG
T ss_pred ceEEEEEE------eCcEEEEEECCEEEEeCcccCCCcCccCCCCcccccccCCCCCCCCCHHHccccCCEEEECCCchh
Confidence 46899998 479999999999999999876421110 01111111 237999999999999
Q ss_pred hhccHHHHHHhcCCCCCeeec-chhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEE
Q 005253 67 HLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145 (706)
Q Consensus 67 HiGgLp~L~~~~g~~~~VyaT-~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~ 145 (706)
|+++++.+..+ .++|||++ ..+....+ .. . +..+..+ ++.+.++ +++
T Consensus 77 H~~~~~~~~~~--~~~~v~~~~~~~~~~l~--------~~-g---------------~~~~~~~--~~~~~~~----~~~ 124 (264)
T 3rpc_A 77 HWDDTAINSIP--KSLPIFVQNTADKELIT--------SQ-G---------------FIDVRII--FESLEFN----GIT 124 (264)
T ss_dssp GSCHHHHHHSC--TTSCEEESSHHHHHHHH--------HT-T---------------CSCEEEC--SSEEEET----TEE
T ss_pred hCCCHHHHhhc--cCCeEEEeCHHHHHHHH--------hc-C---------------CCeeEEe--cccEEEC----CEE
Confidence 99999887653 46899998 55443321 10 0 1122333 5788885 899
Q ss_pred EEEEeCCCCcC--------------ceEEEEEeC-CeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccC--
Q 005253 146 VAPHVAGHLLG--------------GTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ-- 208 (706)
Q Consensus 146 it~~~aGH~lG--------------s~~~~I~~~-~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~-- 208 (706)
|+++++-|.++ .++|+|+.+ +.+++|+||+.+.++.. .+....++|++++++.......
T Consensus 125 i~~~pa~H~~~~~~~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~----~~~~~~~~Dv~il~~g~~~~~~~~ 200 (264)
T 3rpc_A 125 LRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVE----KALLRFDPNVIIMNTGYAQILGFE 200 (264)
T ss_dssp EEEECCCSSCHHHHTSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHH----HHHHHHCCSEEEEECSCBCBTTCS
T ss_pred EEEeccccCCccccccccccccccccEEEEEEeCCccEEEEECCcCchHHHH----HHHHHhCCCEEEEecCcccccccc
Confidence 99999999985 479999987 78999999998876411 1111135899999986432111
Q ss_pred -CChhhHHHHHHHHHHHHhcCCeEEEeecCc
Q 005253 209 -PPRQQREMFQDAISKTLRAGGNVLLPVDSA 238 (706)
Q Consensus 209 -~~r~~~~~l~~~I~~tl~~gG~VLIP~~~~ 238 (706)
+..-..++..+.++ . -+.+.+||+.-.
T Consensus 201 ~~~hm~~~ea~~~~~-~--l~~~~vi~~H~~ 228 (264)
T 3rpc_A 201 DSIIMGTKDIGRMVV-R--KPEAKIIAVHMD 228 (264)
T ss_dssp SCSSCCHHHHHHHHH-H--CTTSEEEEESCS
T ss_pred CCcccCHHHHHHHHH-h--CCcCeEEEEccc
Confidence 11111122333332 2 245678888764
No 23
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.52 E-value=2.1e-14 Score=150.40 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=101.0
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhh
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l 93 (706)
.+.+||+|+.++..||||||+..... ...+..++..+.+|++||+||.|.||+||++.+.+.+ +++||++..+..+
T Consensus 53 ~~~n~~li~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~ 130 (294)
T 3m8t_A 53 DGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKET--GAQLVAGERDKPL 130 (294)
T ss_dssp SSSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHHH--CCEEEEEGGGHHH
T ss_pred CCeEEEEEEECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhcc--CCEEEEChHHHHH
Confidence 36899999999999999999742110 1123333444457999999999999999999998753 6899999988765
Q ss_pred chhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCe----E
Q 005253 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGE----D 168 (706)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~----~ 168 (706)
........ ........++. ......+..++.+.++ ++++++++ +||++|+++|++..++. +
T Consensus 131 ~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~g~~~~~g----~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~ 196 (294)
T 3m8t_A 131 LEGGYYPG-DEKNEDLAFPA---------VKVDRAVKEGDRVTLG----DTTLTAHATPGHSPGCTSWEMTVKDGKEDRE 196 (294)
T ss_dssp HHHTCBTT-BTTCGGGCCCC---------CCCSEEECTTCEEEET----TEEEEEEECCSSSTTCEEEEEEEEETTEEEE
T ss_pred HhcccccC-ccccccCCCCC---------CCCceEeCCCCEEEeC----CEEEEEEeCCCCCccCEEEEEEccCCCccce
Confidence 43211000 00000000000 1123567889999995 88888876 79999999999986544 8
Q ss_pred EEEEecCCC
Q 005253 169 VIYAVDYNR 177 (706)
Q Consensus 169 IlytGD~~~ 177 (706)
++|+||+..
T Consensus 197 ~lf~GD~~~ 205 (294)
T 3m8t_A 197 VLFFCSGTV 205 (294)
T ss_dssp EEECCCCCC
T ss_pred EEEEcCccC
Confidence 999999874
No 24
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.51 E-value=3.5e-14 Score=141.34 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=98.8
Q ss_pred eEEEEEeecCCCCCCeEEEEEE--CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~--~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
.+++.+++ ..+.+||+|+. ++..+|||||... ......+.....++++|++||.|.||+||++.+.+.+ .
T Consensus 2 ~i~~~~~~---~~~~n~~li~~~~~~~~iLiD~G~~~---~~l~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~--~ 73 (210)
T 2xf4_A 2 NYRIIPVT---AFSQNCSLIWCEQTRLAALVDPGGDA---EKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY--G 73 (210)
T ss_dssp EEEEEEET---TTTEEEEEEECTTTCEEEEECCCSCH---HHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHH--T
T ss_pred eEEEEeeC---CcccEEEEEEecCCCcEEEEcCCCCH---HHHHHHHHHcCCceeEEEECCCChhhhcCHHHHHHHc--C
Confidence 45555653 23689999984 6789999999531 1111122211235899999999999999999998764 4
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVW 160 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~ 160 (706)
++||++..+.......+..... ........ .......++.++.+.++ +.+++++. +||++|++++
T Consensus 74 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~g~~~~~g----~~~i~~~~~pgHt~g~~~~ 139 (210)
T 2xf4_A 74 VPVIGPEKEDEFWLQGLPAQSR-MFGLDECQ---------PLTPDRWLNDGDRVSVG----NVTLQVLHCPGHTPGHVVF 139 (210)
T ss_dssp CCEECCCGGGHHHHHTHHHHHH-HTTCCCCC---------CCCCSBCCCTTCEEEET----TEEEEEEECCSSSTTCEEE
T ss_pred CcEEEecchHHHHhccchhhhh-hcCCcccC---------CCCCceEECCCCEEEEC----CeEEEEEECCCCCCCcEEE
Confidence 8999998876643322111110 01100000 00123456778888885 78888775 6999999998
Q ss_pred EEEeCCeEEEEEecCCCC
Q 005253 161 KITKDGEDVIYAVDYNRR 178 (706)
Q Consensus 161 ~I~~~~~~IlytGD~~~~ 178 (706)
++ ++.+++|+||+-..
T Consensus 140 ~~--~~~~~lf~GD~~~~ 155 (210)
T 2xf4_A 140 FD--EQSQLLISGDVIFK 155 (210)
T ss_dssp EE--TTTTEEEEETSEET
T ss_pred Ee--CCCCEEEECCEecc
Confidence 87 57789999998653
No 25
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.51 E-value=8.8e-15 Score=152.70 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC-------------c---cCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCC
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD-------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~-------------~---~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~ 80 (706)
+.+||||+.++..||||||...... . ..+..++..+.+||+||+||.|.||+||++.+.+...+
T Consensus 47 ~~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~~f 126 (280)
T 3esh_A 47 PTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIF 126 (280)
T ss_dssp ECCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCSS
T ss_pred eEEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCcccccccccCC
Confidence 4589999999999999999864310 1 12233445566899999999999999999988752122
Q ss_pred -CCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceE
Q 005253 81 -SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159 (706)
Q Consensus 81 -~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~ 159 (706)
+++||++..+..+...... . .. ..|....+.....++..+. ....+. +++++. ..+||++|+++
T Consensus 127 p~a~i~~~~~~~~~~~~~~~---~---~~---~~~~~~~~~~~~~~~~~~~--~~~~l~---~gi~~~-~~pGHt~g~~~ 191 (280)
T 3esh_A 127 ENAIHVVQQDEWHEFIAPNI---R---SK---STYWDKNKGDYSNKLILFE--KHFEPV---PGIKMQ-HSGGHSFGHTI 191 (280)
T ss_dssp TTCEEEEEHHHHHHHHSCCT---T---GG---GTSCGGGCCGGGGGEEEES--SEECSS---TTEEEE-ECCSSSTTCEE
T ss_pred CCCEEEECHHHHHHhhCccc---c---cc---cchhhhhhhhhhheEEEeC--CCCeEc---CCEEEE-EcCCCCcccEE
Confidence 7999999887654321100 0 00 0011111111112333333 334454 467774 45899999999
Q ss_pred EEEEeCCeEEEEEecCCCCC
Q 005253 160 WKITKDGEDVIYAVDYNRRK 179 (706)
Q Consensus 160 ~~I~~~~~~IlytGD~~~~~ 179 (706)
++++.++++++|+||+-+..
T Consensus 192 ~~i~~~~~~vlftGD~~~~~ 211 (280)
T 3esh_A 192 ITIESQGDKAVHMGDIFPTT 211 (280)
T ss_dssp EEEEETTEEEEECGGGSCSG
T ss_pred EEEEECCcEEEEEEccCCch
Confidence 99999999999999997654
No 26
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.51 E-value=1.4e-14 Score=145.15 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=95.8
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccC-CCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~-~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
.++||+|+.++..||||||.........+..+.. ...+|++||+||.|.||+||++.+.+ ++++||++..+....+
T Consensus 30 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~ 106 (219)
T 3l6n_A 30 SANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNN---KGIKTYATAKTNEFLK 106 (219)
T ss_dssp EEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHH---TTCEEEECHHHHHHHH
T ss_pred cceEEEEEeCCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHh---CCCEEEEcHHHHHHHH
Confidence 5799999999999999999753211112222222 23689999999999999999999986 2689999988765432
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe--CCCCcCceEEEEEeCCeEEEEEe
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~--aGH~lGs~~~~I~~~~~~IlytG 173 (706)
. ... ......+..++.+.++ +++++++. +||++|++++.+ ++.+++|+|
T Consensus 107 ~--------~~~---------------~~~~~~~~~g~~~~~g----~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~G 157 (219)
T 3l6n_A 107 K--------DGK---------------ATSTEIIKTGKPYRIG----GEEFVVDFLGEGHTADNVVVWF--PKYNVLDGG 157 (219)
T ss_dssp H--------TTC---------------CCCSEECCTTSEEEET----TEEEEEECCCCSSSSSCCEEEE--TTTTEEEEE
T ss_pred h--------cCC---------------CCCcEecCCCCEEEEC----CEEEEEEeCCCCCCCCCEEEEE--CCCCEEEEC
Confidence 1 100 0234567788899985 78888885 799999999988 567899999
Q ss_pred cCCC
Q 005253 174 DYNR 177 (706)
Q Consensus 174 D~~~ 177 (706)
|+-.
T Consensus 158 D~~~ 161 (219)
T 3l6n_A 158 CLVK 161 (219)
T ss_dssp TTSC
T ss_pred Ceee
Confidence 9754
No 27
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.50 E-value=5e-14 Score=145.44 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=99.1
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
+.+||||+.++..||||||...... ...+..++..+.+|++||+||.|.||+||++.+.+.+ .++||++..+..+.
T Consensus 24 ~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 101 (263)
T 1k07_A 24 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT--KAKYMVMDEDVSVI 101 (263)
T ss_dssp SBCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHH--CCEEEEEHHHHHHH
T ss_pred CeEEEEEEeCCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHhc--CCEEEEcHHHHHHH
Confidence 6789999999999999999742110 0122333344557999999999999999999998754 58999998887654
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeC--C--eEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKD--G--EDV 169 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~--~--~~I 169 (706)
....... ..+...-...+. .......+..++.+.++ +++++++. +||++|++++++... + .++
T Consensus 102 ~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~g~~~~~g----~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~ 169 (263)
T 1k07_A 102 LSGGKSD-------FHYANDSSTYFT-QSTVDKVLHDGERVELG----GTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQA 169 (263)
T ss_dssp HTTTTTC-------TTTTTCGGGCCC-CCCCSEEECTTCEEEET----TEEEEEEECCSSSTTCEEEEEEEEETTEEEEE
T ss_pred hcccccc-------cccCccccccCC-CCCcceEeCCCCEEEEC----CeEEEEEECCCCCCCcEEEEEecccCCceeEE
Confidence 3211000 000000000000 01234567888899885 77888765 699999999999864 4 489
Q ss_pred EEEecCCC
Q 005253 170 IYAVDYNR 177 (706)
Q Consensus 170 lytGD~~~ 177 (706)
+|+||+..
T Consensus 170 lf~GD~~~ 177 (263)
T 1k07_A 170 VIIGSIGV 177 (263)
T ss_dssp EEECCCCC
T ss_pred EEECCccc
Confidence 99999865
No 28
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.50 E-value=1.9e-14 Score=147.71 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=90.5
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC----------------------c---cCCccccCCCCCccEEEcCCCchhhhccH
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD----------------------P---SLLQPLSKVASTIDAVLLSHPDTLHLGAL 71 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~----------------------~---~~l~~l~~~~~~IdaIlLTH~H~DHiGgL 71 (706)
..+||||+.++..||||||...... . ..+..++..+.+|++||+||.|.||+||+
T Consensus 38 ~~~~~lI~~~~~~iLiDtG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~~I~~VilTH~H~DH~gg~ 117 (254)
T 3dha_A 38 PVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGN 117 (254)
T ss_dssp EEEEEEEEETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTG
T ss_pred eeEEEEEECCCccEEEECCCChhhhcccccccccccccccccccCchhhHHHHHHHcCCCHHHCCEEEcCCChhhcCCCh
Confidence 5689999999999999999853210 0 01222334455699999999999999999
Q ss_pred HHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC
Q 005253 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA 151 (706)
Q Consensus 72 p~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a 151 (706)
+.+. +++||++..+.+..... . .|.. ........+..+ .++...+ +++++... +
T Consensus 118 ~~~~-----~~~i~~~~~~~~~~~~~--------~------~~~~-~~~~~~~~~~~~-~~~~~~~----~~i~~~~~-p 171 (254)
T 3dha_A 118 GAFT-----NTPIIVQRTEYEAALHR--------E------EYMK-ECILPHLNYKII-EGDYEVV----PGVQLLYT-P 171 (254)
T ss_dssp GGCS-----SSCEEEEHHHHHHHHHC--------T------TSCG-GGSCTTSCEEEE-CSSEEEE----TTEEEEEC-C
T ss_pred HHCC-----CCEEEECHHHHHHhhcc--------c------cccc-cccCcccceEEe-cCCcccc----CCEEEEEC-C
Confidence 8763 68999998876643210 0 0000 000000112222 3455444 37777654 5
Q ss_pred CCCcCceEEEEEeC-CeEEEEEecCCCCC
Q 005253 152 GHLLGGTVWKITKD-GEDVIYAVDYNRRK 179 (706)
Q Consensus 152 GH~lGs~~~~I~~~-~~~IlytGD~~~~~ 179 (706)
||++|++++.+..+ +.+++|+||+-+..
T Consensus 172 GHt~g~~~~~~~~~~~~~vl~~GD~~~~~ 200 (254)
T 3dha_A 172 GHSPGHQSLFIETEQSGSVLLTIDASYTK 200 (254)
T ss_dssp SSSTTCEEEEEEETTTEEEEEEETTCSSH
T ss_pred CCCCCCEEEEEEeCCCCEEEEEecccchh
Confidence 99999999999886 67999999997654
No 29
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.49 E-value=3.9e-13 Score=138.19 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=99.2
Q ss_pred EEEEEee-cCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC
Q 005253 5 VQVTPLS-GVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (706)
Q Consensus 5 m~~t~Lg-Ga~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (706)
+.+..++ .+.....+||+|+.++..+|||||..... ..+ +. ..+|++||+||.|.||+||++.+.+.+ +++
T Consensus 6 i~~i~~~~~g~~~~~~~~li~~~~~~iLiD~G~~~~~--~~l---~~-~~~i~~vi~TH~H~DH~gg~~~l~~~~--~~~ 77 (261)
T 3adr_A 6 LHSIPAGPVEFPEIATVYVMCGEKLTVMIDAGVSNSI--ADF---SF-LDKLDYIVLTHLHIDHIGLLPELLQVY--KAK 77 (261)
T ss_dssp EEEEECSCTTCGGGSEEEEEECSSCEEEECCCCTTCC--CCC---TT-CSCCCEEECSCCSGGGTTTHHHHHHHS--CCE
T ss_pred eEEEeccCCCCCCceEEEEEEcCCcEEEEeCCCCCCh--hhc---CC-CCCCcEEEECCCCccccCCHHHHHHHh--CCe
Confidence 4445543 12223678999977688999999986432 122 33 678999999999999999999998764 689
Q ss_pred eeecchhhhhchhhh--HHHHHhhhccCCCCCCCHHhHHHh---------hcccEEecCCCEEEecccCCCEEEEEEe-C
Q 005253 84 VFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSA---------FQSVTRLTYSQNYHLSGKGEGIVVAPHV-A 151 (706)
Q Consensus 84 VyaT~pt~~l~~~~l--~d~~~~~~~~~~~~~~~~~dv~~~---------~~~i~~v~y~q~~~l~~~~~gl~it~~~-a 151 (706)
||++..+........ ...+..... .|.. +... ...+..++.++.+.++ ++++++++ +
T Consensus 78 i~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~g----~~~i~~~~~p 146 (261)
T 3adr_A 78 VLVKSGFKKYLTSEDGLKKLNESAEK-----VLGD--LYYVYGGLEKKLDQDKVIEVEGNEEFDLG----GYRMRLIYTP 146 (261)
T ss_dssp EEEETTCTHHHHSHHHHHHHHHHHHH-----HHTH--HHHHHCCCCSCCCGGGEEEECSCCEEECS----SSEEEEEECT
T ss_pred EEECHHHHHHhcCchhHHHHHHHHHH-----HHHH--HHHHhcccccCCCccceEecCCCCEEEEC----CEEEEEEECC
Confidence 999988765432100 000000000 0000 0000 0234667888888885 78888876 6
Q ss_pred CCCcCceEEEEEeCCeEEEEEecCCCC
Q 005253 152 GHLLGGTVWKITKDGEDVIYAVDYNRR 178 (706)
Q Consensus 152 GH~lGs~~~~I~~~~~~IlytGD~~~~ 178 (706)
||++|+++|.+ .+++|+||+...
T Consensus 147 GHt~~~~~~~~----~~~lf~GD~~~~ 169 (261)
T 3adr_A 147 GHARHHMSVLV----DDFLFTGDSAGA 169 (261)
T ss_dssp TSCTTCEEEEE----TTEEEEETSSCE
T ss_pred CCCCccEEEEE----CCEEEEcCcccc
Confidence 89999999865 479999998653
No 30
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.48 E-value=6.6e-13 Score=143.74 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=109.6
Q ss_pred CeEEEEEeecCCCCCCeEEEEEEC-CeEEEEe--CCCCCCC----------------CccCCc------c--cc-CCCCC
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSID-GFNFLID--CGWNDHF----------------DPSLLQ------P--LS-KVAST 54 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~-~~~ILiD--cG~~~~~----------------~~~~l~------~--l~-~~~~~ 54 (706)
..|+++.|| .+|++|+.+ +.+|||| ||..... ....+. + +. ....+
T Consensus 36 ~~~~it~lG------~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~ql~~~~G~~~l~~~~~~~p~~l~~~~l~~ 109 (360)
T 2wyl_A 36 GTFAMWWLG------CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQ 109 (360)
T ss_dssp TCEEEEEEE------TTEEEEECTTCCEEEESCCCCCCCCCCCC----------------CCCCCCBCSCCCCCGGGCCC
T ss_pred CcEEEEEec------ccEEEEEeCCCCEEEEeecCCCCcccccccccccchhhhhhcCccccCCCcccCCCccCHHHcCC
Confidence 358999983 579999995 8999999 7753210 000011 1 11 12467
Q ss_pred ccEEEcCCCchhhhc--cHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCC
Q 005253 55 IDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132 (706)
Q Consensus 55 IdaIlLTH~H~DHiG--gLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~ 132 (706)
||+|||||.|.||+| ++..+.++++..++||++..+....+ .. . ++ ..++..++.+
T Consensus 110 id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~--------~~-g---~~----------~~~~~~l~~g 167 (360)
T 2wyl_A 110 IDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWI--------GW-G---VP----------KERCIVVKPG 167 (360)
T ss_dssp CSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHH--------HH-T---CC----------GGGEEECCTT
T ss_pred CCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHH--------Hc-C---CC----------hheEEEcCCC
Confidence 999999999999997 46666655433689999877654322 10 0 10 1256778889
Q ss_pred CEEEecccCCCEEEEEEeCCCC------------cC---------ceEEEEEeCCeEEEEEecCCCCCccccCcccccCC
Q 005253 133 QNYHLSGKGEGIVVAPHVAGHL------------LG---------GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF 191 (706)
Q Consensus 133 q~~~l~~~~~gl~it~~~aGH~------------lG---------s~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~l 191 (706)
+.+.++ +++|+++++.|. +| +++|+|+.++.+|+|+||+....+.. .+...
T Consensus 168 ~~~~~g----~~~v~~~~~~H~~~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~----~i~~~ 239 (360)
T 2wyl_A 168 DVVKVK----DIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYA----KHGNE 239 (360)
T ss_dssp CEEEET----TEEEEEEECCCC------------------CCTTTBEEEEEEETTEEEEECTTCCCCTTHH----HHHHH
T ss_pred CEEEEC----CEEEEEEeccCcccccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCHHHH----HHhhC
Confidence 999985 899999998553 33 78999999999999999998765321 11111
Q ss_pred CCCcEEeeccc
Q 005253 192 VRPAVLITDAY 202 (706)
Q Consensus 192 ~~~d~LI~est 202 (706)
.++|++++...
T Consensus 240 ~~~Dv~il~~g 250 (360)
T 2wyl_A 240 HQIDVALGSYG 250 (360)
T ss_dssp SCCCEEEEEBC
T ss_pred CCCCEEEecCC
Confidence 26798888653
No 31
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.46 E-value=1.6e-13 Score=136.55 Aligned_cols=147 Identities=21% Similarity=0.137 Sum_probs=92.7
Q ss_pred eEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~ 83 (706)
.+++.++ +..+.+||+|+.++..+|||||... ...+..+.....+|++|++||.|.||+||++.+.+.+ +++
T Consensus 2 ~i~~~~~---g~~~~n~~li~~~~~~iliD~G~~~---~~l~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~--~~~ 73 (207)
T 2zwr_A 2 RVFPVTL---GPLQENAYLVETGEGPVLIDPGDEP---EKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEAL--DLP 73 (207)
T ss_dssp EEEEEEE---TTTTEEEEEEEETTEEEEECCCSCH---HHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHH--CCC
T ss_pred eEEEEec---CCcccEEEEEEeCCcEEEEeCCCCH---HHHHHHHHHcCCcccEEEECCCChHHHccHHHHHHHh--CCc
Confidence 3444444 2347899999999999999999632 1111122211235999999999999999999998754 589
Q ss_pred eeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEE
Q 005253 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (706)
Q Consensus 84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~ 163 (706)
||++..+....+...... ..... ....+ ......++.++.+. ++++.. .+||++|++++.+
T Consensus 74 v~~~~~~~~~~~~~~~~~--~~~g~-~~~~~--------~~~~~~~~~g~~i~------~~~~~~-~pGHt~g~~~~~~- 134 (207)
T 2zwr_A 74 VYLHPLDLPLYEGADLAA--RAWGL-AIPKP--------PLPVRPLEEGMRLF------GFQVLH-LPGHSPGHVAFYD- 134 (207)
T ss_dssp EEECGGGHHHHHTHHHHH--HHTTC-CCCCC--------CSCCEECCTTCEET------TEEEEE-CCSSSTTCEEEEE-
T ss_pred EEECHHHHHHHhCchhhh--hhcCC-CCCcC--------CCCceEeCCCCEEE------EEEEEe-CCCCCCCcEEEEE-
Confidence 999998877543221110 00000 00000 00123344444432 456554 4799999999988
Q ss_pred eCCeEEEEEecCCCC
Q 005253 164 KDGEDVIYAVDYNRR 178 (706)
Q Consensus 164 ~~~~~IlytGD~~~~ 178 (706)
++.+++|+||+...
T Consensus 135 -~~~~~lf~GD~~~~ 148 (207)
T 2zwr_A 135 -PEGAQVFSGDLLFR 148 (207)
T ss_dssp -TTTTEEEEETSEET
T ss_pred -CCCCEEEEecccCC
Confidence 46789999998653
No 32
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.46 E-value=4.7e-14 Score=141.94 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCC-CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
+.+||+|+.++..+|||||.........+..+... ..+|++|++||.|.||+||++.+.+ ..++||++..+..+.+
T Consensus 26 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~vi~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~ 102 (223)
T 1m2x_A 26 AANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGK---IGAKTYSTKMTDSILA 102 (223)
T ss_dssp EEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHH---TTCEEEEEHHHHHHHH
T ss_pred cccEEEEEeCCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEEEeccCCccccCchhhHhh---CCCeEEEcHHHHHHHH
Confidence 57899999999999999997532111122222221 2579999999999999999999876 3689999988765432
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEEeCCeEEEEEe
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
.. .. + .....+..++.+.++ +.+++++ .+||++|++++++ ++.+++|+|
T Consensus 103 ~~--------~~----~-----------~~~~~~~~g~~~~~g----~~~i~~~~~~pgHt~~~~~~~~--~~~~~lf~G 153 (223)
T 1m2x_A 103 KE--------NK----P-----------RAQYTFDNNKSFKVG----KSEFQVYYPGKGHTADNVVVWF--PKEKVLVGG 153 (223)
T ss_dssp HT--------TC----C-----------CCSEEESSCEEEEET----TEEEEEECCCSSSSSSCCEEEE--TTTTEEEEE
T ss_pred hc--------Cc----c-----------CCceecCCCceEEEC----CEEEEEEecCCCCCCCCEEEEE--CCCCEEEEe
Confidence 10 00 0 012456778888885 7889887 4899999999987 567899999
Q ss_pred cCCC
Q 005253 174 DYNR 177 (706)
Q Consensus 174 D~~~ 177 (706)
|+-.
T Consensus 154 D~~~ 157 (223)
T 1m2x_A 154 CIIK 157 (223)
T ss_dssp TTSC
T ss_pred cccc
Confidence 9654
No 33
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.45 E-value=9.8e-15 Score=148.94 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=92.4
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCC-CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
.+.+||+|+.++..||||||+........+..+... ..+|++||+||.|.||+||++.+.+. +++||++..+..+.
T Consensus 46 ~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~ 122 (243)
T 4hl2_A 46 VASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLA 122 (243)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHHG
T ss_pred ccceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhC---CCeEEECHHHHHHH
Confidence 367999999999999999996421111122222221 34699999999999999999999873 69999998877654
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEec
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD 174 (706)
+.... .... ..+. +.....+..++.+.++ ++++....+||++|++++.+ ++.+++|+||
T Consensus 123 ~~~~~-------~~~~-~~~~-------~~~~~~~~~g~~~~~g----~~~v~~~~pGHt~g~~~~~~--~~~~~lf~GD 181 (243)
T 4hl2_A 123 PQEGM-------VAAQ-HSLT-------FAANGWVEPATAPNFG----PLKVFYPGPGHTSDNITVGI--DGTDIAFGGC 181 (243)
T ss_dssp GGTTC-------CCCS-EEEC-------BCTTSBBCGGGSTTCT----TEEEECCCSSSSTTCCEEEE--TTTTEEECTT
T ss_pred hcccc-------cccc-cccc-------cccceEecCCCeEEEC----CEEEEeCCCCCCcCCEEEEE--cCCCEEEEcc
Confidence 32100 0000 0000 0112234455555554 78885457999999999988 4678999999
Q ss_pred CCCC
Q 005253 175 YNRR 178 (706)
Q Consensus 175 ~~~~ 178 (706)
+-..
T Consensus 182 ~~~~ 185 (243)
T 4hl2_A 182 LIKD 185 (243)
T ss_dssp TCCC
T ss_pred eeee
Confidence 8653
No 34
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.45 E-value=2e-12 Score=140.97 Aligned_cols=164 Identities=15% Similarity=0.065 Sum_probs=110.8
Q ss_pred CeEEEEEeecCCCCCCeEEEEEEC-CeEEEEe--CCCCCCC----------------CccCCc------c--cc-CCCCC
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSID-GFNFLID--CGWNDHF----------------DPSLLQ------P--LS-KVAST 54 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~-~~~ILiD--cG~~~~~----------------~~~~l~------~--l~-~~~~~ 54 (706)
..|+++.|| .+|++|+.+ +.+|||| ||..... ....+. + +. ....+
T Consensus 60 ~~~~it~lG------~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~q~~~~~G~~~l~p~~~~~p~~l~~~~~~~ 133 (379)
T 3bv6_A 60 NTFSMWWLG------CTGIWLKSAGNTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKE 133 (379)
T ss_dssp TCEEEEEEE------TTEEEEEETTCCEEEESCCCCCCCCCSSCCBCCTTCHHHHHHCCCBCCCCCBCSCCCSCGGGCCC
T ss_pred CceEEEEec------ccEEEEEeCCCCEEEEccCCCCCccccccccccccchhheecCccccCccccCCCCccChHHCCC
Confidence 358899883 589999996 8999999 7753210 000111 1 11 12467
Q ss_pred ccEEEcCCCchhhhc--cHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCC
Q 005253 55 IDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132 (706)
Q Consensus 55 IdaIlLTH~H~DHiG--gLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~ 132 (706)
||+|||||.|.||+| ++..+.++++..++||++..+....+. . . ++ ..++..++.+
T Consensus 134 iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~~--------~-g---~~----------~~~~~~l~~g 191 (379)
T 3bv6_A 134 IDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG--------W-G---VP----------QERCIVAKVG 191 (379)
T ss_dssp CSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH--------H-T---CC----------GGGEEECCTT
T ss_pred CCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHHH--------c-C---CC----------hhhEEEeCCC
Confidence 999999999999997 566666554236899998776543221 0 0 00 1246778889
Q ss_pred CEEEecccCCCEEEEEEeCCCC-------------cC---------ceEEEEEeCCeEEEEEecCCCCCccccCcccccC
Q 005253 133 QNYHLSGKGEGIVVAPHVAGHL-------------LG---------GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190 (706)
Q Consensus 133 q~~~l~~~~~gl~it~~~aGH~-------------lG---------s~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~~ 190 (706)
+.+.++ +++|+++++.|. +| +++|+|+.++.+|+|+||+....+.. .+..
T Consensus 192 ~~~~~g----~~~v~~~~~~H~~~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~----~i~~ 263 (379)
T 3bv6_A 192 DVLEIG----DVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYA----KHGN 263 (379)
T ss_dssp CEEEET----TEEEEEEECCCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHH----HHHH
T ss_pred CEEEEC----CEEEEEEecccccccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccHHHH----HHhh
Confidence 999995 899999998774 22 78999999999999999998765321 1111
Q ss_pred CCCCcEEeeccc
Q 005253 191 FVRPAVLITDAY 202 (706)
Q Consensus 191 l~~~d~LI~est 202 (706)
..++|++++...
T Consensus 264 ~~~~Dv~il~~g 275 (379)
T 3bv6_A 264 DYQIDVALLSYG 275 (379)
T ss_dssp HSCCSEEEEEBC
T ss_pred cCCCCEEEecCC
Confidence 126899988653
No 35
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.44 E-value=8.4e-14 Score=140.21 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred EEEEEeecCCC---------CCCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHH
Q 005253 5 VQVTPLSGVFN---------ENPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73 (706)
Q Consensus 5 m~~t~LgGa~~---------~g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~ 73 (706)
|.+++++..+. ...+||+|+.++..||||||...... ...+..++..+.+|++||+||.|.||+||++.
T Consensus 13 ~~~~~~~~~g~~~~p~~~~~~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~ 92 (221)
T 1ztc_A 13 MELKILVTGGNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVL 92 (221)
T ss_dssp EEEEEEECCBEEEETTTEECCBCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGG
T ss_pred eeEEEEEecceEEecCCCCCCceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhh
Confidence 77777654332 25789999999999999999742110 11233344455689999999999999999987
Q ss_pred HHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCC
Q 005253 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH 153 (706)
Q Consensus 74 L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH 153 (706)
+. +++||++... ....+........ ..| ..+......+..++.++.+. . .++++...+ ||
T Consensus 93 ~~-----~~~v~~~~~~---~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~l~-~---~~~~v~~~p-GH 152 (221)
T 1ztc_A 93 FE-----NATFYVHEVY---KTKNYLSFGTIVG-----RIY--SKVISSWKNVVLLKGEESLF-D---EKVKVFHTP-WH 152 (221)
T ss_dssp CT-----TCEEEEEGGG---GGSCGGGGCHHHH-----HHH--HHHHHTCCSEEEECSCCEET-T---TTEEEEECC-SS
T ss_pred CC-----CCEEEEeHHH---hhhhhhhhccchh-----hhh--hhccccccceEEeCCCCEEE-C---CeEEEEEcC-CC
Confidence 63 5899998771 1111100000000 000 00111113456677776653 2 378887765 99
Q ss_pred CcCceEEEEEeCC-eEEEEEecCCCC
Q 005253 154 LLGGTVWKITKDG-EDVIYAVDYNRR 178 (706)
Q Consensus 154 ~lGs~~~~I~~~~-~~IlytGD~~~~ 178 (706)
++|++++++..++ .+++|+||+...
T Consensus 153 t~g~~~~~~~~~~~~~vlftGD~~~~ 178 (221)
T 1ztc_A 153 AREHLSFLLDTENAGRVLITGDITPN 178 (221)
T ss_dssp STTCEEEEEEETTTEEEEECGGGSCS
T ss_pred CcccEEEEEEcCCCCeEEEEeCcccc
Confidence 9999999998876 799999998754
No 36
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.44 E-value=1.6e-13 Score=154.13 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=102.0
Q ss_pred eEEEEEeecCCCCCCeEEEE--EECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLV--SIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL--~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
+|+|..+. .+..+.+||+| +.++..+|||||.+. ...+..+.....+|++||+||.|.||+||++.|.+.+ .
T Consensus 3 ~m~i~~~~-~~~~~~n~yli~~~~~~~~ilID~g~~~---~~~~~~l~~~~~~i~~Il~TH~H~DH~gg~~~l~~~~--~ 76 (474)
T 3tp9_A 3 AMYLRRFY-DEGLAHASYLVGCQETGEACVIDPARDV---EPYLLTAKREGLRIVAALETHIHADFVSGAREMADRA--G 76 (474)
T ss_dssp CEEEEEEE-ETTTTEEEEEEEETTTCEEEEESCCSCC---HHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH--C
T ss_pred ceEEEEEe-cCCceeEEEEEEECCCCEEEEEcCCCCh---HHHHHHHHHcCCeeEEEEcCcCchhhhCCHHHHHHHH--C
Confidence 46666552 23346899999 567899999999642 2222223222347999999999999999999998764 5
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVW 160 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~ 160 (706)
++||++..+........ . .......+..++.+.++ +++++++. +||++|+++|
T Consensus 77 ~~i~~~~~~~~~~~~~~----~------------------~~~~~~~~~~g~~~~~g----~~~i~~i~tPGHt~g~~~~ 130 (474)
T 3tp9_A 77 AAICVSDEGPPEWKSEY----V------------------KAYPHRLLKDGDELHFG----NVRIVVMHTPGHTPEHVSY 130 (474)
T ss_dssp CEEEEECCSCGGGCCGG----G------------------GGSSEEEECTTCEEEET----TEEEEEEECCSSSSSCEEE
T ss_pred CcEEEcCcchhhhcccc----c------------------ccccceECCCCCEEEEC----CEEEEEEECCCCCCCCEEE
Confidence 89999887654321100 0 00123567889999995 78888775 6999999999
Q ss_pred EEEeCCe-----EEEEEecCCCC
Q 005253 161 KITKDGE-----DVIYAVDYNRR 178 (706)
Q Consensus 161 ~I~~~~~-----~IlytGD~~~~ 178 (706)
++...+. +++||||+-..
T Consensus 131 ~~~~~~~~~~~~~~lftGD~lf~ 153 (474)
T 3tp9_A 131 LLYDGKTSPDVPMALFSGDFVFV 153 (474)
T ss_dssp EEEETTTEEEEEEEEEEETSEET
T ss_pred EEecCCCCCCCceEEEeCCcccc
Confidence 9987655 89999998643
No 37
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=99.44 E-value=1e-13 Score=146.05 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=104.6
Q ss_pred eEEEEEeecCCCCCCeEEEEEE--CCeEEEEeCCCCCCCC---------ccCCccccCCCCCccEEEcCCCchhhhccHH
Q 005253 4 SVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHFD---------PSLLQPLSKVASTIDAVLLSHPDTLHLGALP 72 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~--~~~~ILiDcG~~~~~~---------~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp 72 (706)
+|+|..+. ....+.+||||.. ++..+|||||++.... ...+..+.....+|++||+||.|.||+||++
T Consensus 4 ~m~i~~~~-~~~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~gg~~ 82 (298)
T 4efz_A 4 SMTVEGFF-DPATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLSAAP 82 (298)
T ss_dssp SCEEEEEE-CTTTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBCCHH
T ss_pred ceEEEEEe-cCCcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhhhHH
Confidence 46776663 3345789999987 5689999999742110 0112222222335999999999999999999
Q ss_pred HHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhcc-CCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-
Q 005253 73 YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV- 150 (706)
Q Consensus 73 ~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~-~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~- 150 (706)
+|.+.+ .++||++..+..+.+. +...... ..+.. . .......+..++.+.++ +++++++.
T Consensus 83 ~l~~~~--~a~i~~~~~~~~~~~~-----~~~~~~~~~~~~~---~----~~~~~~~~~~g~~l~~g----~~~i~vi~t 144 (298)
T 4efz_A 83 YLKTRV--GGEIAIGRHVTRVQDV-----FGKLFNAGPAFAH---D----GSQFDRLLDDGDTLALG----ALSIRAMHT 144 (298)
T ss_dssp HHHHHH--CCEEEEETTHHHHHHH-----HHHHTTCCTTSCS---S----STTSSEEECTTCEEEET----TEEEEEEEC
T ss_pred HHHHHh--CCcEEEChhHHHHHHH-----HHHhcCCcccccc---c----ccCCCEEeCCCCEEEEC----CEEEEEEEC
Confidence 998865 5899999877654331 1111111 00100 0 00112567889999995 78888776
Q ss_pred CCCCcCceEEEEEeCCeE------EEEEecCCCC
Q 005253 151 AGHLLGGTVWKITKDGED------VIYAVDYNRR 178 (706)
Q Consensus 151 aGH~lGs~~~~I~~~~~~------IlytGD~~~~ 178 (706)
+||++|+++|++...+.+ ++|+||+-..
T Consensus 145 PGHT~g~~~~~~~~~~~~~~~~~~~lftGD~l~~ 178 (298)
T 4efz_A 145 PGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFM 178 (298)
T ss_dssp CSSSTTCEEEEEEETTCCGGGCBCEEECCSSBCC
T ss_pred CCCCcccEEEEECCCcccccCCceEEEEcCcccc
Confidence 799999999999876655 9999998654
No 38
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=99.42 E-value=6.7e-13 Score=140.80 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=96.8
Q ss_pred CeEEEEEeecCCCCCCeEEEEEE--CCeEEEEeCCCCCCCCccCCccc----cC--CCCCccEEEcCCCchhhhccHHHH
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSI--DGFNFLIDCGWNDHFDPSLLQPL----SK--VASTIDAVLLSHPDTLHLGALPYA 74 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~--~~~~ILiDcG~~~~~~~~~l~~l----~~--~~~~IdaIlLTH~H~DHiGgLp~L 74 (706)
..|+++.+... ...+||||.. ++..+|||||.....-...+... +. .+.+|++||+||.|.||+||++.|
T Consensus 27 ~~m~i~~i~~~--~~n~~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l 104 (311)
T 2p18_A 27 SAFSVTVVPTL--KDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKL 104 (311)
T ss_dssp TTEEEEEEEET--TTEEEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHH
T ss_pred CCcEEEEEecC--CCcEEEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHH
Confidence 44677766431 1455999998 58899999985421000111111 10 125799999999999999999999
Q ss_pred HHhcC-----CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE
Q 005253 75 MKQLG-----LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH 149 (706)
Q Consensus 75 ~~~~g-----~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~ 149 (706)
.+.++ ..++||++.... ++ .....+..++.+.++ +++++++
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~-------------------~~-----------~~~~~l~~g~~l~lg----~~~l~vi 150 (311)
T 2p18_A 105 KAELEAMNSTVPVVVVGGANDS-------------------IP-----------AVTKPVREGDRVQVG----DLSVEVI 150 (311)
T ss_dssp HHHHHSCC--CCCEEEEEGGGT-------------------CT-----------TCSEEECTTCEEEET----TEEEEEE
T ss_pred HHhhhhcccCCCCEEEEechhc-------------------CC-----------CCceEeCCCCEEEEC----CeEEEEE
Confidence 87641 147899875431 00 123567788899985 7888877
Q ss_pred e-CCCCcCceEEEEEeCC---e-EEEEEecCCCC
Q 005253 150 V-AGHLLGGTVWKITKDG---E-DVIYAVDYNRR 178 (706)
Q Consensus 150 ~-aGH~lGs~~~~I~~~~---~-~IlytGD~~~~ 178 (706)
. +||++|+++|+++.++ . +++|+||+-..
T Consensus 151 ~tPGHT~g~i~~~~~~~~~~~~~~~lftGD~l~~ 184 (311)
T 2p18_A 151 DAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFI 184 (311)
T ss_dssp ECCSSSTTCEEEEEECTTCGGGCEEEEEETTEET
T ss_pred ECCCCCcccEEEEEecCCcCCcCCEEEEcCcccc
Confidence 6 4999999999998766 7 99999998543
No 39
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.42 E-value=1.2e-13 Score=143.27 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCeEEEEEeecCCC------------------CCCeEEEEEECCeEEEEeCCCCCCC--------------Cc---cCCc
Q 005253 2 GTSVQVTPLSGVFN------------------ENPLSYLVSIDGFNFLIDCGWNDHF--------------DP---SLLQ 46 (706)
Q Consensus 2 ~~~m~~t~LgGa~~------------------~g~sc~LL~~~~~~ILiDcG~~~~~--------------~~---~~l~ 46 (706)
++.|++++|+.+.. .+.+||||+.++..||||||..... .. ..+.
T Consensus 1 m~~~~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 80 (274)
T 3aj3_A 1 MSDTKVYLLDGGSLVLDGYHVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALG 80 (274)
T ss_dssp -CCCEEEEEEEEEEEEEHHHHTTTTCCCSEEEEEEEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHH
T ss_pred CCccEEEEEcCceEEechHheecCCCCCcEEEeeEEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHH
Confidence 15688888864321 1358999999999999999986421 00 1223
Q ss_pred cccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCH---HhHHHh-
Q 005253 47 PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTL---DDIDSA- 122 (706)
Q Consensus 47 ~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~---~dv~~~- 122 (706)
.++..+.+|++||+||.|.||+||++.+. +++||++..+........... ...... ..+.. ......
T Consensus 81 ~~g~~~~~i~~VilTH~H~DH~gg~~~~~-----~a~v~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 151 (274)
T 3aj3_A 81 LLGLEPRDIDVVVNSHFHFDHCGGNKYFP-----HAKKICHRSEVPQACNPQPFE-HLGYSD---LSFSAEAAEARGATA 151 (274)
T ss_dssp HTTCCGGGCCEEECSCCSGGGTTTGGGCT-----TSEEEEETTHHHHHHSCCGGG-TTTTCC---CTTCHHHHHHHTCGG
T ss_pred HcCCCHHHCCEEEecCcCcccCCchhhCC-----CCEEEECHHHHHHHhCcCCcc-ccccCh---hhhcccccccccccc
Confidence 33444567999999999999999998762 689999987766432111000 000000 00000 000000
Q ss_pred ---------hcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeC-CeEEEEEecCCCCC
Q 005253 123 ---------FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 179 (706)
Q Consensus 123 ---------~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~-~~~IlytGD~~~~~ 179 (706)
...+..++ +.+.++ +.+++... +||++|++++++..+ +++++|+||+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~--~~~~l~---g~~~v~~~-pGHt~g~~~~~~~~~~~~~~lf~GD~~~~~ 212 (274)
T 3aj3_A 152 QLLEGTTRANSTFEGID--GDVDLA---RGVKLIST-PGHSIGHYSLLVEFPRRKPILFTIDAAYTQ 212 (274)
T ss_dssp GCCTTCCSTTSCEEEEC--SSEEEE---TTEEEEEC-TTSSTTCEEEEECCSSSCCEEEEETTCSSH
T ss_pred ccccccccCCCCceEcC--CccccC---CEEEEEEC-CCCCceeeEEEEECCCCCEEEEEechhhhH
Confidence 01233443 346664 13777655 699999999999765 67999999987654
No 40
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=99.42 E-value=6.4e-14 Score=141.35 Aligned_cols=129 Identities=14% Similarity=0.231 Sum_probs=92.0
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCC-CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
..+||+|+.++..+|||||.........+..+... ..+|++|++||.|.||+||++.+.+. .++||++..+..+.+
T Consensus 40 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~ 116 (227)
T 1mqo_A 40 PSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAELAK 116 (227)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHHHH
T ss_pred cceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhC---CcEEEeccchHHHHH
Confidence 46899999999999999997531101112222221 46899999999999999999999875 589999987765432
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEEeCCeEEEEEe
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
. . .++ ..+..+..++.+.++ +++++++ .+||++|++++.+ ++.+++|+|
T Consensus 117 ~--------~----~~~-----------~~~~~~~~~~~~~~g----~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~G 167 (227)
T 1mqo_A 117 K--------N----GYE-----------EPLGDLQTVTNLKFG----NMKVETFYPGKGHTEDNIVVWL--PQYNILVGG 167 (227)
T ss_dssp H--------T----TCC-----------CCCCCBCSEEEEEET----TEEEEEECCCCSSSSSCCEEEE--TTTTEEEEE
T ss_pred h--------c----CCC-----------CCccccCCCCeeeEC----CEEEEEEecCCCCCCCCEEEEE--CCCCEEEEe
Confidence 1 0 000 012234556677775 7888876 4899999999987 567899999
Q ss_pred cCCC
Q 005253 174 DYNR 177 (706)
Q Consensus 174 D~~~ 177 (706)
|+-.
T Consensus 168 D~~~ 171 (227)
T 1mqo_A 168 CLVK 171 (227)
T ss_dssp TTSC
T ss_pred eeee
Confidence 9854
No 41
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.42 E-value=1.3e-12 Score=143.16 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=94.8
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
+.|||+|+ ++..+|||||..... ...+..+. ....+|++||+||.|.||+||++.+.+.++ .++||++..+..+.
T Consensus 34 ~~n~~li~-~~~~iliD~G~~~~~-~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~ 110 (402)
T 1e5d_A 34 TYNAYLVE-DEKTTLFDTVKAEYK-GELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQ-PEKIFTSSLGQKAM 110 (402)
T ss_dssp EEEEEEEC-SSSCEEECCCCGGGH-HHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHC-CSEEEEEHHHHHHH
T ss_pred ceEEEEEE-CCCEEEEeCCCCccH-HHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHHCC-CCEEEEChHHHHHH
Confidence 56799999 678999999974211 11112222 235689999999999999999999988654 68999998887653
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC--CCCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~lGs~~~~I~~~~~~Ilyt 172 (706)
+. .+ . .+ ...+..++.++.+.++ +++++++++ ||++|++++.+ +..+++|+
T Consensus 111 ~~----~~----~---~~----------~~~~~~~~~g~~~~~g----~~~~~~~~~p~gH~~~~~~~~~--~~~~~l~~ 163 (402)
T 1e5d_A 111 ES----HF----H---YK----------DWPVQVVKHGETLSLG----KRTVTFYETRMLHWPDSMVSWF--ADEKVLIS 163 (402)
T ss_dssp HH----HH----C---CS----------SCCEEEECTTCEEECS----SCEEEEEECTTSSSTTCEEEEE--TTTTEEEE
T ss_pred HH----Hh----C---CC----------CCceEEcCCCCEEEEC----CCEEEEEeCCCCCCCCcEEEEE--CCCCEEEe
Confidence 32 11 0 00 0245678889999985 677777764 89999988766 67789999
Q ss_pred ecCCC
Q 005253 173 VDYNR 177 (706)
Q Consensus 173 GD~~~ 177 (706)
||+..
T Consensus 164 GD~~~ 168 (402)
T 1e5d_A 164 NDIFG 168 (402)
T ss_dssp ETTTC
T ss_pred ccccc
Confidence 99843
No 42
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=99.41 E-value=4.6e-13 Score=138.44 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=91.7
Q ss_pred eEEEEEeecCCCCCCeEEEEEEC--CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
.++..+++ ...+||||..+ +..+|||||.. ...+..+.....+|++||+||.|.||+||++.|.+.++ .
T Consensus 2 ~i~~i~~~----~~n~~yli~~~~~~~~vlID~G~~----~~i~~~l~~~g~~i~~IllTH~H~DH~gg~~~l~~~~~-~ 72 (260)
T 1qh5_A 2 KVEVLPAL----TDNYMYLVIDDETKEAAIVDPVQP----QKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLES-G 72 (260)
T ss_dssp EEEEEEET----TTEEEEEEEETTTTEEEEESCSSH----HHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHST-T
T ss_pred EEEEEEec----CceEEEEEEECCCCEEEEEcCCCH----HHHHHHHHHcCCCccEEEeCCCCccccCCHHHHHHHCC-C
Confidence 34555542 34569999985 68999999931 11222222222358999999999999999999988653 5
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVW 160 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~ 160 (706)
++||++..... .....+..++.+.++ +++++++. +||++|+++|
T Consensus 73 ~~v~~~~~~~~-------------------------------~~~~~~~~g~~~~~g----~~~~~vi~tPGHt~g~~~~ 117 (260)
T 1qh5_A 73 LKVYGGDDRIG-------------------------------ALTHKITHLSTLQVG----SLNVKCLATPCHTSGHICY 117 (260)
T ss_dssp CEEEESCTTST-------------------------------TCSEECCTTCEEEET----TEEEEEEECCSSSTTCEEE
T ss_pred CEEEECcccCC-------------------------------CCCEEeCCCCEEEEC----CEEEEEEECCCCCCCCEEE
Confidence 89999753210 012456778888885 77777765 6999999999
Q ss_pred EE-Ee--CCeEEEEEecCCC
Q 005253 161 KI-TK--DGEDVIYAVDYNR 177 (706)
Q Consensus 161 ~I-~~--~~~~IlytGD~~~ 177 (706)
++ +. ++.+++|+||+-.
T Consensus 118 ~~~~~~~~~~~~lftGD~l~ 137 (260)
T 1qh5_A 118 FVSKPGGSEPPAVFTGDTLF 137 (260)
T ss_dssp EEECSSSSSCCEEEEETTEE
T ss_pred EEeccCCCCCCEEEEcCccc
Confidence 98 43 4678999999854
No 43
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=99.41 E-value=9.9e-14 Score=140.52 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCC-CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
..+||+|+.++..+|||||+........+..+... ..+|++|++||.|.||+||++.+.+ .+++||++..+..+.+
T Consensus 36 ~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~ 112 (232)
T 1a7t_A 36 PSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR---KGVQSYANQMTIDLAK 112 (232)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHH
T ss_pred cceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHh---CCCeEEEcHHHHHHHH
Confidence 36899999999999999997421111112222211 3579999999999999999999876 2689999987765432
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEEeCCeEEEEEe
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
. .. ++ .....+..++.+.++ +.+++++ .+||++|++++++ +..+++|+|
T Consensus 113 ~--------~~----~~-----------~~~~~~~~g~~~~~g----~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~G 163 (232)
T 1a7t_A 113 E--------KG----LP-----------VPEHGFTDSLTVSLD----GMPLQCYYLGGGHATDNIVVWL--PTENILFGG 163 (232)
T ss_dssp H--------HT----CC-----------CCSEEESSEEEEEET----TEEEEEECCCCSSSTTCCEEEE--TTTTEEEEE
T ss_pred h--------cC----CC-----------CCceecCCCCEEEEC----CeEEEEEeCCCCCCCCCEEEEE--CCCCEEEEc
Confidence 1 00 00 123456667788885 7888887 4899999999987 456899999
Q ss_pred cCCCC
Q 005253 174 DYNRR 178 (706)
Q Consensus 174 D~~~~ 178 (706)
|+-..
T Consensus 164 D~~~~ 168 (232)
T 1a7t_A 164 CMLKD 168 (232)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 98653
No 44
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=99.41 E-value=4.2e-13 Score=138.22 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=88.8
Q ss_pred CCeEEEEEEC--CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~--~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..+||+|..+ +..+|||||.. ...+..+.....+|++||+||.|.||+||++.+.+.+ .++||++..+....
T Consensus 11 ~n~~yli~~~~~~~~~lID~g~~----~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~ 84 (254)
T 1xm8_A 11 DNYAYILHDEDTGTVGVVDPSEA----EPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRY--GAKVIGSAMDKDRI 84 (254)
T ss_dssp TEEEEEEECTTTCCEEEECCSSH----HHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHH--CCEEEEEGGGGGGS
T ss_pred CeEEEEEEECCCCEEEEEeCCCH----HHHHHHHHHcCCCccEEEECCCCCcccccHHHHHHHc--CCeEEEchhhhhcC
Confidence 4459999875 57999999931 1122222222347999999999999999999998765 48999987654321
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeEEEEEe
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~IlytG 173 (706)
+ .....+..++.+.++ +.+++++. +||++|+++|++. +.+++|+|
T Consensus 85 ~----------------------------~~~~~~~~g~~~~lg----~~~~~vi~tPGHt~g~~~~~~~--~~~~lftG 130 (254)
T 1xm8_A 85 P----------------------------GIDMALKDGDKWMFA----GHEVHVMDTPGHTKGHISLYFP--GSRAIFTG 130 (254)
T ss_dssp T----------------------------TEEEEECTTCEEEET----TEEEEEEECCSSSSSCEEEEEG--GGTEEEEE
T ss_pred C----------------------------CCceeeCCCCEEEEC----CEEEEEEECCCCCCCcEEEEEC--CCCEEEEc
Confidence 1 012456778889885 77887775 7999999999884 46799999
Q ss_pred cCCC
Q 005253 174 DYNR 177 (706)
Q Consensus 174 D~~~ 177 (706)
|+-.
T Consensus 131 D~l~ 134 (254)
T 1xm8_A 131 DTMF 134 (254)
T ss_dssp TTEE
T ss_pred Cccc
Confidence 9854
No 45
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=99.40 E-value=4.7e-13 Score=138.23 Aligned_cols=129 Identities=13% Similarity=0.244 Sum_probs=92.8
Q ss_pred eEEEEEeecCCCCCCeEEEEEE-CCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSI-DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~-~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~ 82 (706)
.|+++.+.... +.+||+|.. ++..+|||||.. ...+..+.....+|++||+||.|.||+||++.+.+.++ .+
T Consensus 7 ~m~i~~i~~~~--~n~~yli~~~~~~~vlID~G~~----~~i~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~-~~ 79 (258)
T 2qed_A 7 SMNLNSIPAFQ--DNYIWVLTNDEGRCVIVDPGEA----APVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFP-QM 79 (258)
T ss_dssp CCEEEEEEETT--TEEEEEEECTTSEEEEECCSCH----HHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCT-TC
T ss_pred ccEEEEecccC--ceEEEEEEECCCcEEEEeCCCc----HHHHHHHHHcCCCCCEEEeCCCCccccCCHHHHHHHCC-CC
Confidence 47777775322 456999988 578999999942 11122222112379999999999999999999988654 58
Q ss_pred CeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEE
Q 005253 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWK 161 (706)
Q Consensus 83 ~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~ 161 (706)
+||++..+.. + .....+..++.+.++ +.+++++. +||++|+++|+
T Consensus 80 ~v~~~~~~~~-------------------~-----------~~~~~~~~g~~~~~g----~~~~~vi~tPGHt~g~~~~~ 125 (258)
T 2qed_A 80 TVYGPAETQD-------------------K-----------GATHLVGDGDTIRVL----GEKFTLFATPGHTLGHVCYF 125 (258)
T ss_dssp EEEECGGGGG-------------------G-----------TCSEECCTTCEEEET----TEEEEEEECCSSSTTCEEEE
T ss_pred EEEecccccC-------------------C-----------CCcEEeCCCCEEEEC----CcEEEEEECCCCCCCCeEEE
Confidence 9999865420 0 023456778888885 77787765 69999999888
Q ss_pred EEeCCeEEEEEecCCC
Q 005253 162 ITKDGEDVIYAVDYNR 177 (706)
Q Consensus 162 I~~~~~~IlytGD~~~ 177 (706)
..+++|+||+-.
T Consensus 126 ----~~~~lftGD~l~ 137 (258)
T 2qed_A 126 ----SRPYLFCGDTLF 137 (258)
T ss_dssp ----ETTEEEEETTEE
T ss_pred ----cCCEEEECCCCC
Confidence 457999999854
No 46
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=99.39 E-value=4.3e-13 Score=137.40 Aligned_cols=136 Identities=12% Similarity=0.079 Sum_probs=96.9
Q ss_pred eEEEEEeecCCCCCCeEEEEEEC----CeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC
Q 005253 4 SVQVTPLSGVFNENPLSYLVSID----GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~~~----~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g 79 (706)
.|.|..+.. ...+.+||||..+ +..+|||||... . ...+..+.....+|++||+||.|.||+||++.|.+.+
T Consensus 2 ~m~~~~~~~-~~~~~~~yli~~~~~~~~~~ilID~g~~~-~-~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~- 77 (245)
T 2gcu_A 2 KLLFRQLFE-NESSTFTYLLADVSHPDKPALLIDPVDKT-V-DRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKL- 77 (245)
T ss_dssp CEEEEEEEE-TTTTEEEEEEEETTSTTCEEEEESCBGGG-H-HHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHS-
T ss_pred CcEEEEeec-CCCceEEEEEEcCCCCCCcEEEEeCCCch-H-HHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhC-
Confidence 467777643 3347889999984 689999999731 0 1111222222235999999999999999999998743
Q ss_pred CCCCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCce
Q 005253 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGT 158 (706)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~ 158 (706)
..++||++..+.. .....+..++.+.++ +++++++. +||++|++
T Consensus 78 ~~~~v~~~~~~~~-------------------------------~~~~~~~~g~~~~~g----~~~i~v~~tpGHt~g~~ 122 (245)
T 2gcu_A 78 PGVKSVISKASGS-------------------------------KADLFLEPGDKVSIG----DIYLEVRATPGHTAGCV 122 (245)
T ss_dssp TTCEEEEEGGGCC-------------------------------CCSEEECTTCEEEET----TEEEEEEECCSSSTTCE
T ss_pred CCCeEEecccccc-------------------------------cCCEEcCCCCEEEEC----CEEEEEEECCCCCCCCE
Confidence 2689999865421 012456778889985 78888775 69999999
Q ss_pred EEEEEeCC----eEEEEEecCCCC
Q 005253 159 VWKITKDG----EDVIYAVDYNRR 178 (706)
Q Consensus 159 ~~~I~~~~----~~IlytGD~~~~ 178 (706)
+|++...+ .+++|+||+-..
T Consensus 123 ~~~~~~~~~~~~~~~lftGD~~~~ 146 (245)
T 2gcu_A 123 TYVTGEGADQPQPRMAFTGDAVLI 146 (245)
T ss_dssp EEEECCSTTSCSSCEEEEETTSBT
T ss_pred EEEECCccccccccEEEECCcccc
Confidence 99986542 389999998654
No 47
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=99.39 E-value=9.2e-13 Score=139.56 Aligned_cols=153 Identities=19% Similarity=0.127 Sum_probs=98.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCc----cCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDP----SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~----~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
..|||+|+.++..+|||||....... ..+..++..+.+|++|++||.|.||+||++.+.+. .++||++..+..
T Consensus 21 ~~n~~li~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~Vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~ 97 (317)
T 2zo4_A 21 TVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGL---GARVFLHEEEFA 97 (317)
T ss_dssp EEEEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHHT---TCEEEEEGGGTT
T ss_pred cEEEEEEEcCCceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCEEEEcCCCCcccccHHHHHhC---CCEEEEcHHHHH
Confidence 57899999998999999998532111 12233334445799999999999999999999874 589999998876
Q ss_pred hchhhhH------HHHHhhhccCCCCCCCHHhHHH----------hhcccEEecCCCEEEecccCCCEEEEEEe-CCCCc
Q 005253 93 LGLLTMY------DQYLSRRQVSEFDLFTLDDIDS----------AFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLL 155 (706)
Q Consensus 93 l~~~~l~------d~~~~~~~~~~~~~~~~~dv~~----------~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~l 155 (706)
..+.... ..+.........+.-....+.. .......+..++.+.++ |.+++++. +||++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g----g~~~~~i~tpGHt~ 173 (317)
T 2zo4_A 98 RGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVA----GKRLRVLWTPGHAD 173 (317)
T ss_dssp THHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEET----TEEEEEEECCSSST
T ss_pred HHHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcccccccCCCCCCceEECCCCEEEeC----CceEEEEECCCCCc
Confidence 5432110 0000000000000000000000 01234667888999885 77888776 59999
Q ss_pred CceEEEEEeCCeEEEEEecCCCC
Q 005253 156 GGTVWKITKDGEDVIYAVDYNRR 178 (706)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~ 178 (706)
|++++.+ ++.+++|+||.-..
T Consensus 174 g~~~~~~--~~~~~lf~GD~~~~ 194 (317)
T 2zo4_A 174 GHAAFYL--EEEGVLLAGDALLE 194 (317)
T ss_dssp TCEEEEE--TTTTEEEEETSCCS
T ss_pred ccEEEEe--CCCCEEEECCEecC
Confidence 9999876 67889999998653
No 48
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=140.39 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=93.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC-cc-CCccccCCCCCccEEEcCCCchhhhccHHHHHHhcC--CCCCeeecchhhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD-PS-LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG--LSAPVFSTEPVYR 92 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~-~~-~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g--~~~~VyaT~pt~~ 92 (706)
+.|||+|+.++..||||||+..... .. ....+.....+|++||+||.|.||+||++.+.+.++ ..++||+...+..
T Consensus 31 ~~n~~li~~~~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~ 110 (289)
T 4ad9_A 31 GTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQ 110 (289)
T ss_dssp CCEEEEECSSSSEEEECCCSTTCHHHHHHHHHHHHHTTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSC
T ss_pred ceEEEEEecCCceEEEeCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcc
Confidence 7899999988899999999642110 01 111222223479999999999999999999998752 3678888754422
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeEEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIY 171 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~Ily 171 (706)
..... . .....+..+..++.+.++ +.+++++. +||++|++++.+ +..+++|
T Consensus 111 ~~~~~-----------------~-----~~~~~~~~~~~g~~~~~g----g~~~~~~~~pGHt~~~~~~~~--~~~~~lf 162 (289)
T 4ad9_A 111 REEII-----------------G-----NGEQQYVYLKDGDVIKTE----GATLRVLYTPGHTDDHMALLL--EEENAIF 162 (289)
T ss_dssp CCCCB-----------------T-----TTTBCEEECCTTCEEEET----TEEEEEEECCSSSTTCEEEEE--TTTTEEE
T ss_pred hhhhc-----------------c-----CCCCceEEcCCCCEEEeC----CeEEEEEECCCCCCCCEEEEE--cCCCEEE
Confidence 11100 0 011245678889999995 88888876 499999999988 5567999
Q ss_pred EecCCC
Q 005253 172 AVDYNR 177 (706)
Q Consensus 172 tGD~~~ 177 (706)
+||.-.
T Consensus 163 tGD~~~ 168 (289)
T 4ad9_A 163 SGDCIL 168 (289)
T ss_dssp EETSSC
T ss_pred EecccC
Confidence 999743
No 49
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.38 E-value=3.7e-13 Score=141.28 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=96.8
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
+.+||+|+.++..||||||+..... ...+..++..+.+|++||+||.|.||+||++.+.+.+ .++||++..+..+.
T Consensus 57 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~l 134 (303)
T 4ax1_B 57 GISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKAT--GAPVYARAPAIDTL 134 (303)
T ss_dssp SSCCEEECCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHHH--CCCEEEEHHHHHHH
T ss_pred CceEEEEEeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhhc--CCEEEEcHHHHHHH
Confidence 6789999999999999999743211 0122333344456999999999999999999998764 58999998887654
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCC---eEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDG---EDVI 170 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~---~~Il 170 (706)
+..... ...+.|..............+..++.+.++ +.+++++. +||++|+++|.+.... ...+
T Consensus 135 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g----~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~ 202 (303)
T 4ax1_B 135 KRGLPD--------RTDPNFEVAEPVAPVANIVTLADDGVVSVG----PLALTAVASPGHTPGGTSWTWRSCEGDDCRQM 202 (303)
T ss_dssp HHTSCC--------TTSTTGGGCCCCCCCSCEEEECTTCEEEET----TEEEEEEECCSSSTTCEEEEEEEEETTEEEEE
T ss_pred hccccC--------ccccccccccCcCCCCCcEEeCCCCEEEEC----CeEEEEEeCCCCCccceEEEEEecCCCceeEE
Confidence 322100 000001000000011245678889999995 78888775 7999999999986531 1235
Q ss_pred EEecCCC
Q 005253 171 YAVDYNR 177 (706)
Q Consensus 171 ytGD~~~ 177 (706)
++||.-.
T Consensus 203 l~gD~l~ 209 (303)
T 4ax1_B 203 VYADSLT 209 (303)
T ss_dssp EECCCCC
T ss_pred EEeCCcc
Confidence 5588643
No 50
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.37 E-value=2.7e-13 Score=145.11 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=94.4
Q ss_pred CeEEEEEECCeEEEEeCCCCCCCC---c---cCCccccCCCCCccEEEcCCCchhhhccHHHHHH-hcCCCCCeeecchh
Q 005253 18 PLSYLVSIDGFNFLIDCGWNDHFD---P---SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK-QLGLSAPVFSTEPV 90 (706)
Q Consensus 18 ~sc~LL~~~~~~ILiDcG~~~~~~---~---~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~-~~g~~~~VyaT~pt 90 (706)
.+||||+.++..||||||....+. . ..+..++..+.+||+||+||.|.||+||+..+.. .++ +++||++..+
T Consensus 97 ~n~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~~~fp-~a~v~~~~~~ 175 (331)
T 1p9e_A 97 VTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFP-NAVVRADQKE 175 (331)
T ss_dssp EEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESST-TCEEECBHHH
T ss_pred EEEEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCcccccccccCC-CCEEEECHHH
Confidence 459999999999999999864211 1 1233344456689999999999999999984322 222 6899999887
Q ss_pred hhhchhhhHHHHHhhhccC-CCC-CCC--HHhHHHh--hcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEe
Q 005253 91 YRLGLLTMYDQYLSRRQVS-EFD-LFT--LDDIDSA--FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164 (706)
Q Consensus 91 ~~l~~~~l~d~~~~~~~~~-~~~-~~~--~~dv~~~--~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~ 164 (706)
.++.... .... .... ... .+. .+.+... -.++..++.++. +. .|+++... +||++|+++++++.
T Consensus 176 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--i~---~gi~vi~t-pGHtpG~~~~~i~~ 245 (331)
T 1p9e_A 176 ADFWLSQ---TNLD-KAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTD--LV---PGIKALAS-HGHTPGHTTYVVES 245 (331)
T ss_dssp HHHHSCH---HHHT-TCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEE--CS---TTEEEEEC-TTSSTTCEEEEEEE
T ss_pred HHHHhCc---hhhc-cCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCE--Ec---ccEEEEEc-CCCChhCEEEEEEE
Confidence 6643210 0000 0000 000 000 0111111 123445554443 33 36777654 69999999999998
Q ss_pred CCeEEEEEecCCCCC
Q 005253 165 DGEDVIYAVDYNRRK 179 (706)
Q Consensus 165 ~~~~IlytGD~~~~~ 179 (706)
++++++|+||+.+..
T Consensus 246 ~~~~vlf~GD~~~~~ 260 (331)
T 1p9e_A 246 QGQKLALLGDLILVA 260 (331)
T ss_dssp TTEEEEECTTSCCCH
T ss_pred CCcEEEEEECccCcc
Confidence 889999999998754
No 51
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=8.2e-13 Score=134.61 Aligned_cols=146 Identities=12% Similarity=0.145 Sum_probs=91.2
Q ss_pred CCeEEEEEEC-CeEEEEeCCCCCCCCccCCccccC--CCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhh
Q 005253 17 NPLSYLVSID-GFNFLIDCGWNDHFDPSLLQPLSK--VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (706)
Q Consensus 17 g~sc~LL~~~-~~~ILiDcG~~~~~~~~~l~~l~~--~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l 93 (706)
+.+||+|+.+ +..+|||||.........+..+.. ....+ +|++||.|.||+||++.+.+ +.++||++..+..+
T Consensus 29 ~~n~~li~~~~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~~-~vi~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~ 104 (246)
T 2fhx_A 29 SSNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKV-VAINTHFHLDGTGGNEIYKK---MGAETWSSDLTKQL 104 (246)
T ss_dssp TEEEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEE-EEECCSSSHHHHTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred CCCEEEEEeCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCcE-EEEeCCCCccccChHHHHhh---cCCEEEEcHHHHHH
Confidence 6799999876 479999999742111111111211 22334 79999999999999999875 26899999988775
Q ss_pred chhhhHHHHHhhhccCCCCCCCHHhHHHhh--------cccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEE
Q 005253 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAF--------QSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKIT 163 (706)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~--------~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~ 163 (706)
.+............ .+....+...+ +.+..+..++.+.++ +.+++++ .+||++|++++.+
T Consensus 105 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g----~~~i~~~~~~pGHt~g~~~~~~- 174 (246)
T 2fhx_A 105 RLEENKKDRIKAAE-----FYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFS----NELVEVSFPGPAHSPDNVVVYF- 174 (246)
T ss_dssp HHHHHHHHHHHHHH-----HCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEET----TEEEEEECCCCSSSTTCCEEEE-
T ss_pred HHhcchhhhHHHHh-----hhccccchhhhcccccCCCCceeecCCCCEEEEC----CEEEEEEeCCCCCCCCCEEEEE-
Confidence 43221111000000 00000010000 122345667788885 7788887 3799999998887
Q ss_pred eCCeEEEEEecCCC
Q 005253 164 KDGEDVIYAVDYNR 177 (706)
Q Consensus 164 ~~~~~IlytGD~~~ 177 (706)
++.+++|+||+-.
T Consensus 175 -~~~~~lf~GD~~~ 187 (246)
T 2fhx_A 175 -PKKKLLFGGCMIK 187 (246)
T ss_dssp -TTTTEEEEETTCC
T ss_pred -cCCCEEEECCEec
Confidence 5678999999865
No 52
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.36 E-value=2.3e-13 Score=140.61 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..|||||+. +..+|||||... .....+..+. ....+|++|++||.|.||+||++.+.++++ .++||++..+..+.
T Consensus 42 ~~N~yli~~-~~~iLID~G~~~-~~~~~~~~l~~~~~~~~i~~IilTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l 118 (262)
T 3hnn_A 42 TSNSYVIEG-DKTAIIDPPVES-FMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAP-QITFVCSLPAAGDL 118 (262)
T ss_dssp EEEEEEEES-SSEEEECCCCHH-HHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCT-TCEEEECHHHHHHH
T ss_pred EEEEEEEEC-CCEEEEECCCcc-hHHHHHHHHHHhCChhhCCEEEECCCCcchhchHHHHHHHCC-CCEEEECHHHHHHH
Confidence 457999987 789999999742 1011111111 234689999999999999999999988653 79999998887643
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CC-CCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AG-HLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aG-H~lGs~~~~I~~~~~~Ilyt 172 (706)
+.. + .. + ......++.++.+.++ ++.+++++. +| |++|++++.+ +..+++||
T Consensus 119 ~~~----~----~~---~----------~~~~~~~~~g~~l~lg---~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lfs 172 (262)
T 3hnn_A 119 RAA----F----PD---D----------NLNILPMRGKETLDLG---KGHVLKFLPIPSPRWPAGLCTYD--VQTQILYT 172 (262)
T ss_dssp HHH----S----SS---S----------CCEEEECCSSCEEECS---TTCEEEEEECCCSSCTTCEEEEE--TTTTEEEE
T ss_pred HHH----h----CC---C----------CCceEEeCCCCEEEcC---CCcEEEEEECCCCCCCCeeEEEe--CCCCEEEE
Confidence 311 0 00 0 0245677889999984 366666654 56 9999987765 66789999
Q ss_pred ecC
Q 005253 173 VDY 175 (706)
Q Consensus 173 GD~ 175 (706)
||+
T Consensus 173 GD~ 175 (262)
T 3hnn_A 173 DKI 175 (262)
T ss_dssp ETT
T ss_pred eec
Confidence 998
No 53
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.35 E-value=1.3e-12 Score=135.13 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=94.1
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
+.+||+|+.++..+|||||...... ...+..++..+.+|++||+||.|.||+||++.+.+.+ .++||++..+..+.
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~l 114 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRT--GAKVAANAESAVLL 114 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHS--SCEEEECHHHHHHH
T ss_pred CcEEEEEEeCCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHhc--CCeEEECHHHHHHH
Confidence 5689999999999999999742110 0123333344457999999999999999999998764 58999998876643
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEe--CCe-EEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITK--DGE-DVI 170 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~--~~~-~Il 170 (706)
+..... .........+. .......++.++.+.++ +++++++. +||++|++++++.. ++. ..+
T Consensus 115 ~~~~~~----~~~~~~~~~~~------~~~~~~~~~~g~~~~~g----~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l 180 (269)
T 1sml_A 115 ARGGSD----DLHFGDGITYP------PANADRIVMDGEVITVG----GIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRI 180 (269)
T ss_dssp HTTTCS----BTTTBTSSCCC------CCCCSEECCTTCEEEET----TEEEEEEECCSSSTTCEEEEEEEEETTEEEEE
T ss_pred hcCCcc----ccccccccCCC------CCCCCeEeCCCCEEEEC----CEEEEEEECCCCCcccEEEEEecccCCceeEE
Confidence 311000 00000000000 00123557778889885 78888775 68999999999865 232 345
Q ss_pred EEecCCC
Q 005253 171 YAVDYNR 177 (706)
Q Consensus 171 ytGD~~~ 177 (706)
++||.-.
T Consensus 181 ~~gD~l~ 187 (269)
T 1sml_A 181 AYADSLS 187 (269)
T ss_dssp EECCCCC
T ss_pred EEecccc
Confidence 5589744
No 54
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=99.34 E-value=5.2e-13 Score=134.19 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=88.3
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCCccCCccccC-CCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~-~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
.+.+||+|+.++..||||||.........+..+.. ...+|++|++||.|.||+||++.+.+ .+++||++..+..+.
T Consensus 21 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~ 97 (227)
T 3iog_A 21 VQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS---IGAKVVSTRQTRDLM 97 (227)
T ss_dssp SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHH
T ss_pred ccCcEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhh---CCCeEEECHHHHHHH
Confidence 36899999999999999999742111111222222 34689999999999999999999875 379999999988765
Q ss_pred hhhhHHHHH-hhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEe
Q 005253 95 LLTMYDQYL-SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 95 ~~~l~d~~~-~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
+........ .+.....++... ......+ +...+.+.+ ..+++...++||++|++++.+ +..+++| |
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~l~~--~~~~~~~~~pGHt~g~~~~~~--~~~~~lf-g 164 (227)
T 3iog_A 98 KSDWAEIVAFTRKGLPEYPDLP-------LVLPNVV-HDGDFTLQE--GKVRAFYAGPAHTPDGIFVYF--PDEQVLY-G 164 (227)
T ss_dssp HHHHHHHHHHHHHHCTTSCCCC-------CCCCSEE-ESSCEEETT--TTEEEECCCCSSSSSCCEEEE--TTTTEEE-C
T ss_pred HHhhHHHHHHhhcCCCCCCCcc-------ccCCCEe-ecCeEEEcC--cEEEEEecCCCCCCCcEEEEe--cCCCEEE-c
Confidence 432221110 000001110000 0000111 123466641 345555445899999999887 4667999 7
Q ss_pred cCC
Q 005253 174 DYN 176 (706)
Q Consensus 174 D~~ 176 (706)
|.-
T Consensus 165 d~l 167 (227)
T 3iog_A 165 GCI 167 (227)
T ss_dssp GGG
T ss_pred ccc
Confidence 753
No 55
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=99.34 E-value=5.7e-13 Score=137.98 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=89.7
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCC-CCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~-~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
+.+||+|+.++..+|||||+........+..+... ..+|++|++||.|.||+||++.+.+. +++||++..+....+
T Consensus 67 ~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~~i~~VilTH~H~DH~gg~~~~~~~---~a~v~~~~~~~~~~~ 143 (265)
T 2y8b_A 67 SSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAA---GVATYTSPLTRQLAE 143 (265)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT---TCEEEECHHHHHHHH
T ss_pred cceEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCChhhcCCHHHHhhC---CCeEEECHHHHHHHH
Confidence 57899999999999999997421111112222211 23799999999999999999988762 689999988766432
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecC
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
.. ... .+. ..+.. ..+.++.+.++ ++++....+||++|++++.+ +..+++|+||+
T Consensus 144 ~~--------~~~--~~~-------~~~~~--~~~~~~~~~~g----~~~v~~~~pGHt~g~~~~~~--~~~~~lf~GD~ 198 (265)
T 2y8b_A 144 AA--------GNE--VPA-------HSLKA--LSSSGDVVRFG----PVEVFYPGAAHSGDNLVVYV--PAVRVLFGGCA 198 (265)
T ss_dssp HT--------TCC--CCS-------EECSS--CSSTTEEEEET----TEEEEECCSSSSTTCCEEEE--TTTTEEEEETT
T ss_pred hc--------ccc--ccc-------ccccc--cCCCCcEEeec----CEEEEecCCCCCCCCEEEEe--cCCCEEEEccc
Confidence 11 000 000 00000 01345566653 78886567999999999987 45689999998
Q ss_pred CCC
Q 005253 176 NRR 178 (706)
Q Consensus 176 ~~~ 178 (706)
-..
T Consensus 199 ~~~ 201 (265)
T 2y8b_A 199 VHE 201 (265)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 56
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.34 E-value=1.1e-12 Score=146.82 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=119.2
Q ss_pred eEEEEEeecCCCCCCeEEEEE--ECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCC
Q 005253 4 SVQVTPLSGVFNENPLSYLVS--IDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (706)
Q Consensus 4 ~m~~t~LgGa~~~g~sc~LL~--~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~ 81 (706)
+|.|..+. .+..+.+||||. .++..+|||||.+. ...+..+.....+|++||+||.|.||+||++.|.+.+ .
T Consensus 24 ~m~i~~~~-~~~~~~nsyli~~~~~~~~vlID~g~~~---~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~ 97 (466)
T 3r2u_A 24 AMFFKQFY-DKHLSQASYLIGCQKTGEAMIIDPIRDL---SSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKL--N 97 (466)
T ss_dssp CEEEEEEE-ETTTTEEEEEEEETTTCEEEEESCCSCC---HHHHHHHHHHTCEEEEEECSSCCSSSCCCHHHHHHHH--C
T ss_pred CeEEEEEe-cCCccceEEEEEeCCCCEEEEEcCCCCH---HHHHHHHHHCCCeeeEEEECCCChhhhccHHHHHHhh--C
Confidence 46666553 233478999995 46789999999532 1222223323346999999999999999999998865 5
Q ss_pred CCeeecchhhhhchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEE
Q 005253 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVW 160 (706)
Q Consensus 82 ~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~ 160 (706)
++||++..+...... .... .....+..++.+.++ +++++++. +||++|+++|
T Consensus 98 a~v~~~~~~~~~~~~---------------~~~~--------~~~~~~~~g~~l~~g----~~~l~vi~tPGHT~g~~~~ 150 (466)
T 3r2u_A 98 ANIYVSGESDDTLGY---------------KNMP--------NHTHFVQHNDDIYVG----NIKLKVLHTPGHTPESISF 150 (466)
T ss_dssp CEEEEECCSCTTTSC---------------CSCC--------TTCEEECTTCEEEET----TEEEEEEECCSSSTTCEEE
T ss_pred CeEEECcchhhhhcc---------------ccCC--------CCCEEeCCCCEEEEC----CEEEEEEECCCCCCCCEEE
Confidence 899998765332110 0000 134678889999995 88888876 7999999999
Q ss_pred EEEeC-----CeEEEEEecCCCCCccccCcccccCCCCCcEEeeccccccccCCChhhHHHHHHHHHHHHhcCC-eEEEe
Q 005253 161 KITKD-----GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG-NVLLP 234 (706)
Q Consensus 161 ~I~~~-----~~~IlytGD~~~~~~~~L~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG-~VLIP 234 (706)
.+... +.+++||||+-.... ..++|+.=..+.+.. ......+.+.+.+.+.+.-.. .+++|
T Consensus 151 ~~~~~~~~~~~~~~lftGD~lf~~~----------~gr~dl~~~~~~~~g---~~~~~~~~~~~Sl~kl~~L~~~~~v~P 217 (466)
T 3r2u_A 151 LLTDEGAGAQVPMGLFSGDFIFVGD----------IGRPDLLEKAVKVEG---SSEIGAKQMFKSIESIKDLPDYIQIWP 217 (466)
T ss_dssp EEECGGGTCCSCCEEEEETTBCSSC----------BCCCCCCCGGGCCTT---HHHHHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred EEcCCCccCCCceEEEECCcccCCC----------CCCcCccccccccCC---CchHHHHHHHHHHHHHhcCCCCeEEEC
Confidence 99762 346999999865331 234442200000000 001122366677766554443 46888
Q ss_pred ecC
Q 005253 235 VDS 237 (706)
Q Consensus 235 ~~~ 237 (706)
..-
T Consensus 218 gHg 220 (466)
T 3r2u_A 218 GHG 220 (466)
T ss_dssp SBC
T ss_pred CCC
Confidence 776
No 57
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=99.33 E-value=1.5e-11 Score=140.35 Aligned_cols=225 Identities=10% Similarity=0.107 Sum_probs=130.6
Q ss_pred CeEEEEEeecCCCCCCeEEEEEECCeEEEEeCCCCCCCCc---------------------c-CCcccc-CCCCCccEEE
Q 005253 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP---------------------S-LLQPLS-KVASTIDAVL 59 (706)
Q Consensus 3 ~~m~~t~LgGa~~~g~sc~LL~~~~~~ILiDcG~~~~~~~---------------------~-~l~~l~-~~~~~IdaIl 59 (706)
+.++|++|. .+...++|+||+.++..||||||....+.. . .+..+. ....+||+||
T Consensus 4 ~~~~I~~ld-vG~gqg~~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~id~vi 82 (547)
T 2bib_A 4 SGNKIHFIN-VQEGGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFIL 82 (547)
T ss_dssp SCEEEEEEC-BSSSBCCEEEEEETTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEE
T ss_pred cCceEEEEE-cCCCCceEEEEEeCCeEEEEeCCCCCcccccccccccccccccccccchhHHHHHHHHHhcCcccccEEE
Confidence 457777763 322357899999999999999998532110 0 011111 2346799999
Q ss_pred cCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchhhh---HHHHHhhhccCCCCCCCHHhHHHhh--cccE----Eec
Q 005253 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTM---YDQYLSRRQVSEFDLFTLDDIDSAF--QSVT----RLT 130 (706)
Q Consensus 60 LTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~~l---~d~~~~~~~~~~~~~~~~~dv~~~~--~~i~----~v~ 130 (706)
|||+|.||+||++.|.+.++ ..+||++..+........ ...+ ....+.... ..+. .+.
T Consensus 83 lTH~H~DHiggl~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~ 149 (547)
T 2bib_A 83 VTHTHSDHIGNVDELLSTYP-VDRVYLKKYSDSRITNSERLWDNLY------------GYDKVLQTATETGVSVIQNITQ 149 (547)
T ss_dssp CCCSCHHHHTTHHHHHHHSC-BSEEECCCCCGGGBSCGGGCTTHHH------------HHHHHHHHHHHTTCEEECSCCT
T ss_pred EcCCCccccCCHHHHHHhCC-ccEEEECcccccccCChHHHHhHHH------------HHHHHHHHHHHhCCeEEEeecC
Confidence 99999999999999988654 235998877655432110 0000 000010000 0111 235
Q ss_pred CCCEEEecccCCCEEEEEEeC---CC-----------CcCceEEEEEeCCeEEEEEecCCCCCccccCccccc-CCCCCc
Q 005253 131 YSQNYHLSGKGEGIVVAPHVA---GH-----------LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE-SFVRPA 195 (706)
Q Consensus 131 y~q~~~l~~~~~gl~it~~~a---GH-----------~lGs~~~~I~~~~~~IlytGD~~~~~~~~L~~~~l~-~l~~~d 195 (706)
.++.+.++ +++|+++++ .| ..+|++++|+.++.+++|+||+....+.. ..+. .+.++|
T Consensus 150 ~g~~~~~g----~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~~~~~~e---~~l~~~~~~~D 222 (547)
T 2bib_A 150 GDAHFQFG----DMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAE---DKYGPLIGKVD 222 (547)
T ss_dssp TTTEEEET----TEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCCSTTSHH---HHHHHHHCCCS
T ss_pred CCceEecC----CeeEEEecCccccCccccccccCCCCCCcEEEEEEECCEEEEecCCccchhhhh---hhhccccccee
Confidence 56788885 899998873 23 35789999999999999999998753211 0111 124789
Q ss_pred EEeeccccccccCCChhhHHHHHHHHHHHHhcCCeEEEeecCc---h-hHHHHHHHHHHHHHhcCCCccEEE
Q 005253 196 VLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSA---G-RVLELLLILEDYWAEHSLNYPIYF 263 (706)
Q Consensus 196 ~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~~~~---G-R~~ELl~~L~~~~~~~~l~~pI~~ 263 (706)
+|+.....+.... ....|++.|. -..++|.+-.. | -.+|.+..|.+. .+++|-
T Consensus 223 vLkv~HHG~S~~s----~s~~fl~~v~-----P~~aiiS~g~~n~~~hP~~evl~~l~~~------g~~v~~ 279 (547)
T 2bib_A 223 LMKFNHHHDTNKS----NTKDFIKNLS-----PSLIVQTSDSLPWKNGVDSEYVNWLKER------GIERIN 279 (547)
T ss_dssp EEECTTTTBCSSS----SCHHHHHHHC-----CSEEEESBSSCSBSSSBCHHHHHHHHTT------TCEEEE
T ss_pred EEEeccccCcccC----ChHHHHHhcC-----CcEEEEcCCcccccCCCCHHHHHHHHhC------CceEEE
Confidence 9997644212111 1125666542 23344433221 0 146777766654 456654
No 58
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=99.33 E-value=9.9e-13 Score=132.66 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=90.3
Q ss_pred CCCeEEEEEECCeEEEEeCCCCCCCCccCCcccc-CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 16 ~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
.+.|||+|+.++..+|||||+........+..+. ....+|++|++||.|.||+||++.+.+ ..++||++..+..+.
T Consensus 24 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~ 100 (233)
T 3q6v_A 24 VQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKT---LGAKIVATQMTYDLQ 100 (233)
T ss_dssp SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHH
T ss_pred CCCcEEEEEeCCeEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhhChHHHHhh---CCCEEEEcHHHHHHH
Confidence 4789999999899999999975321111111121 125689999999999999999999974 369999999887765
Q ss_pred hhhhHHHHHh-hhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEe
Q 005253 95 LLTMYDQYLS-RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 95 ~~~l~d~~~~-~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
+......... +.....++.. ........+. +...+. ..++++...++||++|++++.+ +..+++| |
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~l~--~~~~~v~~~~pGHt~g~~~~~~--~~~~~lf-g 167 (233)
T 3q6v_A 101 KSQWGSIVNFTRQGNNKYPNL------EKSLPDTVFP--GDFNLQ--NGSIRAMYLGEAHTKDGIFVYF--PAERVLY-G 167 (233)
T ss_dssp HHHHHHHHHHHHHHSTTCCCC------CCCCCSEEES--SCEEET--TTTEEEECCCCSSSSSCCEEEE--TTTTEEE-C
T ss_pred HhhhHHHHHHHhccccccccc------cccCCCEEeC--CCeEEc--CceEEEEECCCCCCcCcEEEEe--ccCCEEE-C
Confidence 4322111000 0000000000 0000112233 233443 1367776666899999998887 5677999 9
Q ss_pred cCCCC
Q 005253 174 DYNRR 178 (706)
Q Consensus 174 D~~~~ 178 (706)
|.-..
T Consensus 168 D~~~~ 172 (233)
T 3q6v_A 168 NCILK 172 (233)
T ss_dssp TTTSC
T ss_pred ceecc
Confidence 97543
No 59
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.32 E-value=2.6e-12 Score=135.36 Aligned_cols=152 Identities=16% Similarity=0.062 Sum_probs=96.7
Q ss_pred CCeEEEE-EECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhh
Q 005253 17 NPLSYLV-SIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (706)
Q Consensus 17 g~sc~LL-~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l 93 (706)
..+||++ ..++..+|||||.....+ ...+..+-....+|++|++||.|.||+||++.+.+.++ +++||++..+...
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~-~a~v~~~~~~~~~ 101 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLP-NVQVLASERTCQA 101 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCT-TCEEEEEHHHHHH
T ss_pred CceEEEEEeCCCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHhCC-CCeEEECHHHHHH
Confidence 6889999 488899999999743110 01122221135689999999999999999999987543 6899999988765
Q ss_pred chhhhH-HHHH--hhhccCCCCC-CCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CCCCcCceEEEEEeCCeE
Q 005253 94 GLLTMY-DQYL--SRRQVSEFDL-FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGED 168 (706)
Q Consensus 94 ~~~~l~-d~~~--~~~~~~~~~~-~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aGH~lGs~~~~I~~~~~~ 168 (706)
...... ..+. .......+.. .....+. . ..+..+..++.+.++ +|.+++++. +||++|++++.+ ++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~lg---~g~~l~~i~~pGHt~g~~~~~~--~~~~ 174 (303)
T 2vw8_A 102 WKSESAVRVVERLNRQLLRAEQRLPEACAWD-A-LPVRAVADGEWLELG---PRHRLQVIEAHGHSDDHVVFYD--VRRR 174 (303)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCCCCCCCCGG-G-SCEEEECTTCEEEEE---TTEEEEEEECTTSSTTCEEEEE--TTTT
T ss_pred HhccchhhHHHHHHHHHHHhhcccccccCCC-C-CCceEcCCCCEEecC---CCeEEEEEECCCCCcccEEEEE--CCCC
Confidence 432111 0000 0000000000 0000000 0 123567888899886 347777665 599999999888 5678
Q ss_pred EEEEecCC
Q 005253 169 VIYAVDYN 176 (706)
Q Consensus 169 IlytGD~~ 176 (706)
++|+||.-
T Consensus 175 ~lf~GD~~ 182 (303)
T 2vw8_A 175 RLFCGDAL 182 (303)
T ss_dssp EEEEETTT
T ss_pred EEEEcCcc
Confidence 99999984
No 60
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.32 E-value=1.3e-11 Score=134.82 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=92.7
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..+||+|+. +..+|||||.....+ ...+... ....+|++||+||.|.||+||++.+.++++ .++||++..+....
T Consensus 35 ~~n~~li~~-~~~iliD~g~~~~~~~~~~~l~~~-~~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~l 111 (398)
T 1ycg_A 35 TYNAYLIVD-DKTALVDTVYEPFKEELIAKLKQI-KDPVKLDYLVVNHTESDHAGAFPAIMELCP-DAHVLCTQRAFDSL 111 (398)
T ss_dssp EECCEEECS-SSCEEECCCCGGGHHHHHHHHHHH-CSSCCCSEEEESCCSHHHHTTHHHHHHHCT-TCEEEECHHHHHHH
T ss_pred eEEEEEEEC-CCEEEEeCCCcccHHHHHHHHHHh-cCcccCCEEEeCCCCcchhhhHHHHHHHCC-CCEEEEcHHHHHHH
Confidence 468999984 579999999752110 0112222 235789999999999999999999988653 68999998876543
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-C-CCCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-A-GHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-a-GH~lGs~~~~I~~~~~~Ilyt 172 (706)
+. .+ . .+ -..+..++.++.+.++ +.++++++ + ||++|++++.+ +..+++|+
T Consensus 112 ~~----~~----~---~~----------~~~~~~~~~g~~~~~g----~~~~~~~~~p~gH~~~~~~~~~--~~~~~lf~ 164 (398)
T 1ycg_A 112 KA----HY----S---HI----------DFNYTIVKTGTSVSLG----KRSLTFIEAPMLHWPDSMFTYV--PEEALLLP 164 (398)
T ss_dssp HH----HT----C---SC----------CCEEEECCTTCEEECS----SCEEEEEECTTSSSTTCEEEEE--TTTTEEEE
T ss_pred HH----Hh----C---CC----------CcceEEeCCCCEEeeC----CcEEEEEeCCCCCCCCcEEEEE--CCCcEEEe
Confidence 21 10 0 00 0235667888999985 67777775 4 89999988765 67789999
Q ss_pred ecCC
Q 005253 173 VDYN 176 (706)
Q Consensus 173 GD~~ 176 (706)
||+.
T Consensus 165 GD~~ 168 (398)
T 1ycg_A 165 NDAF 168 (398)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9984
No 61
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.30 E-value=2.4e-12 Score=141.40 Aligned_cols=129 Identities=20% Similarity=0.260 Sum_probs=95.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
+-|||||..++..+|||+|..... ...+..+. ..+.+||+|++||.|.||+|+++.+.++++.+++||++.....+.
T Consensus 51 syNsYLI~~~~~~vLIDtg~~~~~-~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l 129 (410)
T 4dik_A 51 SYNAYLVKLNGANVLIDGWKGNYA-KEFIDALSKIVDPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLL 129 (410)
T ss_dssp EEEEEEEECSSCEEEECCCCGGGH-HHHHHHHTTTSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHH
T ss_pred EEEEEEEEECCeEEEEeCCCcchH-HHHHHHHHHhcCcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHH
Confidence 347999999999999999964211 12222222 235689999999999999999999998777789999998877654
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-CC-CCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AG-HLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~-aG-H~lGs~~~~I~~~~~~Ilyt 172 (706)
+. .+. ...+..++.++.+.++ +.++++++ +| |+||++++.. .+++||
T Consensus 130 ~~----~~~-------------------~~~~~~v~dGd~l~lG----~~~L~~i~tPg~H~p~~~~~y~----~~iLFs 178 (410)
T 4dik_A 130 EG----FYG-------------------IKDVTVVKDGEEREIG----GKKFKFVMTPWLHWPDTMVTYL----DGILFS 178 (410)
T ss_dssp HH----HHC-------------------CCCEEECCTTCEEEET----TEEEEEEECTTSSSTTCEEEEE----TTEEEE
T ss_pred Hh----hcC-------------------ccceeEecCCCEEeec----ceEEEEecCCCCCCCCCeeEEe----CCceEc
Confidence 31 110 0245678899999996 77777765 46 9999988775 469999
Q ss_pred ecCCC
Q 005253 173 VDYNR 177 (706)
Q Consensus 173 GD~~~ 177 (706)
||.-.
T Consensus 179 gD~fg 183 (410)
T 4dik_A 179 CDVGG 183 (410)
T ss_dssp ETTTC
T ss_pred ccccc
Confidence 99753
No 62
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=99.30 E-value=9.3e-13 Score=133.03 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
+.+||+|+.++..+|||||+........+..+.....+|++|++||.|.||+||++.+.+ . +++||++..+..+.+.
T Consensus 32 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~~~~ 108 (228)
T 1jjt_A 32 PKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNS-R--SIPTYASELTNELLKK 108 (228)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHH-T--TCCEEEEHHHHHHHHH
T ss_pred cceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHcCCCeeEEEeCCCChhhhccHHHHHh-C--CCEEEEChHHHHHHHh
Confidence 568999999999999999975211111222232223379999999999999999999876 2 6899999887654321
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEE--eCCCCcCceEEEEEeCCeEEEEEec
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH--VAGHLLGGTVWKITKDGEDVIYAVD 174 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~--~aGH~lGs~~~~I~~~~~~IlytGD 174 (706)
. .. ..+ . ..+. ++.+.++ +..++++ .+||++|++++.+ +..+++|+||
T Consensus 109 ~--------~~--~~~------------~-~~~~-g~~~~l~----~~~i~~~~~~pGHt~g~~~~~~--~~~~~lf~GD 158 (228)
T 1jjt_A 109 D--------GK--VQA------------T-NSFS-GVNYWLV----KNKIEVFYPGPGHTPDNVVVWL--PERKILFGGC 158 (228)
T ss_dssp T--------TC--CCC------------S-EEEC-SSCCEEE----TTTEEEECCCCSSSTTCCEEEE--TTTTEEEEET
T ss_pred c--------CC--cCc------------c-cccc-CcceEec----CceEEEEecCCCCCCCcEEEEE--CCCcEEEEec
Confidence 0 00 000 0 1111 3444454 3344443 5899999999987 4578999999
Q ss_pred CCC
Q 005253 175 YNR 177 (706)
Q Consensus 175 ~~~ 177 (706)
+-.
T Consensus 159 ~~~ 161 (228)
T 1jjt_A 159 FIK 161 (228)
T ss_dssp TCC
T ss_pred ccc
Confidence 864
No 63
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.30 E-value=2.4e-12 Score=141.12 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=94.1
Q ss_pred CeEEEEEECCeEEEEeCCCCCCCCccCCccccC-----CCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhh
Q 005253 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (706)
Q Consensus 18 ~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~-----~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~ 92 (706)
.+||+|+.++..+|||||..... ...+..+.. ...+|++|++||.|.||+||++.+.+.++ .++||++..+..
T Consensus 35 ~n~~li~~~~~~iLiD~g~~~~~-~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~~p-~~~v~~~~~~~~ 112 (404)
T 2ohh_A 35 YNAYLVCGDEGVALIDNSYPGTF-DELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFP-EAPIYCTEVAVK 112 (404)
T ss_dssp ECCEEEECSSCEEEECCCCTTCH-HHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHST-TCCEEECHHHHH
T ss_pred EEEEEEEeCCcEEEEeCCCCccH-HHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHHCC-CCEEEECHHHHH
Confidence 47999998888999999974211 111122211 35689999999999999999999987653 689999988766
Q ss_pred hchhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeC--CCCcCceEEEEEeCCeEEE
Q 005253 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVI 170 (706)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~a--GH~lGs~~~~I~~~~~~Il 170 (706)
..+.. +. . + .-..+..++.++.+.++ +.+++++++ ||++|++++++. ..+++
T Consensus 113 ~~~~~----~~----~---~---------~~~~~~~~~~g~~~~~g----~~~i~~~~~p~gH~~~~~~~~~~--~~~~l 166 (404)
T 2ohh_A 113 GLLKH----YP----S---L---------REAEFMTVKTGDVLDLG----GKTLTFLETPLLHWPDSMFTLLD--EDGIL 166 (404)
T ss_dssp HHHHH----CG----G---G---------GGSCEEECCTTCEEECS----SCEEEEEECTTSSSTTCEEEEEE--TTTEE
T ss_pred HHHHH----hc----c---c---------ccCCceEcCCCCEEEEC----CEEEEEEeCCCCCCCCceEEEEC--CCcEE
Confidence 43211 00 0 0 00245677888999885 777777764 799999998874 56799
Q ss_pred EEecCC
Q 005253 171 YAVDYN 176 (706)
Q Consensus 171 ytGD~~ 176 (706)
|+||+-
T Consensus 167 f~GD~~ 172 (404)
T 2ohh_A 167 FSNDAF 172 (404)
T ss_dssp ECTTTT
T ss_pred EecCcc
Confidence 999975
No 64
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.30 E-value=8.9e-12 Score=125.49 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=82.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhchh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (706)
+++|++|+.++.+||||||... . .+.....++|+|||||.|.||++ ++.+. + +.+++.
T Consensus 19 ~~~~~li~~~~~~iLiD~g~~~-~------~~~~~~~~id~VliTH~H~DH~~-~~~l~---~-~~~vi~---------- 76 (220)
T 1vjn_A 19 GHACFALEMEGKTIVTDPFDES-V------GYPIPNVTADVVTESHQHFDHNA-HHLVK---G-NFRVID---------- 76 (220)
T ss_dssp ETTEEEEEETTEEEEESCCC------------CCCCCBCSEEECSSCC---CG-GGGCB---S-SCEEEC----------
T ss_pred cCCEEEEEECCEEEEEcCCCCc-C------CCCcCCCCcCEEEECCCCCCCCC-chHhc---C-CCEEEc----------
Confidence 5799999999999999999742 1 12223568999999999999998 66432 1 222220
Q ss_pred hhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcC-------ceEEEEEeCCeEE
Q 005253 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG-------GTVWKITKDGEDV 169 (706)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lG-------s~~~~I~~~~~~I 169 (706)
. ...+.++ +++|+++++.|..+ +++|+|+.++.++
T Consensus 77 ---------------------------------~-~g~~~~~----~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i 118 (220)
T 1vjn_A 77 ---------------------------------R-PGAYTVN----GVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKV 118 (220)
T ss_dssp ---------------------------------S-SEEEEET----TEEEEEEEEEEC-------CEEEEEEEEETTEEE
T ss_pred ---------------------------------C-CCeEEEC----CEEEEEEeeecCCCCCccCCCcEEEEEEECCeEE
Confidence 0 1145564 89999999989873 4899999999999
Q ss_pred EEEecCCCCCccccCcccccCCCCCcEEeeccc
Q 005253 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (706)
Q Consensus 170 lytGD~~~~~~~~L~~~~l~~l~~~d~LI~est 202 (706)
+|+||+.+.++. ..+..+.++|++|+++.
T Consensus 119 ~~~GDt~~~~~~----~~~~~~~~~Dvlil~~g 147 (220)
T 1vjn_A 119 CHLGDLGHVLTP----AQVEEIGEIDVLLVPVG 147 (220)
T ss_dssp EECTTCCSCCCH----HHHHHHCCCSEEEEECC
T ss_pred EEeCCCCCcchH----HHHHhhCCCCEEEEcCC
Confidence 999999887531 11223457999999984
No 65
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.25 E-value=2.7e-11 Score=133.35 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=90.0
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCC--ccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhc
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~--~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~ 94 (706)
..+||||+. +..+|||||.....+ ...+..+ ....+|++|++||.|.||+||++.+.+.++ .++||++..+....
T Consensus 40 ~~n~~li~~-~~~iLID~G~~~~~~~~~~~l~~~-~~~~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~ 116 (414)
T 2q9u_A 40 SYNSYFIDD-ECPTVIDSVKYPFAEEWLSRIAAC-CPLDKIKYVVMNHAEGDHASSLKDHYHKFT-NATFVCTKKCQEHL 116 (414)
T ss_dssp EECCEEECS-SSCEEECCCCGGGHHHHHHHHHHH-SCGGGCCEEECSCCSGGGTTTHHHHGGGST-TCEEEECHHHHHHH
T ss_pred ceeEEEEEC-CCEEEEeCCCcccHHHHHHHHHHh-cCcccCCEEEeCCCCcchhcCHHHHHHHCC-CCEEEECHHHHHHH
Confidence 367899984 789999999732110 0112222 234689999999999999999999987543 68999998876643
Q ss_pred hhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEe--CCCCcCceEEEEEeCCeEEEEE
Q 005253 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYA 172 (706)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~--aGH~lGs~~~~I~~~~~~Ilyt 172 (706)
. +.+ .. + -.....++.++.+.++ +.++++++ .||++|++++.+ ++.+++|+
T Consensus 117 ~----~~~----~~---~----------~~~~~~~~~g~~~~lg----~~~~~~~~~p~gHt~~~~~~~~--~~~~~lf~ 169 (414)
T 2q9u_A 117 K----ILY----GM---E----------KATWLIVDDKYTLKIG----KRTLKFIPVPLLHWPDSTFTYC--PEDKILFS 169 (414)
T ss_dssp H----HHH----CC---T----------TCCEEECCTTCCEECS----SCEEEEEECTTSSSTTCEEEEE--TTTTEEEE
T ss_pred H----HHh----CC---C----------CCeeEEeCCCCEEEEC----CeEEEEEeCCCCCCCCceEEEE--CCCeEEEE
Confidence 2 111 00 0 0134567778888885 66666554 489999887654 56789999
Q ss_pred ecCCC
Q 005253 173 VDYNR 177 (706)
Q Consensus 173 GD~~~ 177 (706)
||+-.
T Consensus 170 GD~~~ 174 (414)
T 2q9u_A 170 NDGFG 174 (414)
T ss_dssp ETTTC
T ss_pred ccccc
Confidence 99643
No 66
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.24 E-value=7e-13 Score=137.75 Aligned_cols=137 Identities=14% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc-CCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhhch
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~-~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l~~ 95 (706)
..|||+|..++..+|||+|++.......+..+. .....|++|++||.|.||+||+..|.+. .+++|++..+..+.+
T Consensus 74 ~~N~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~ 150 (270)
T 4eyb_A 74 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQLAP 150 (270)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHHGG
T ss_pred ceEEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhcCcHHHHHHC---CCeEEECHHHHHHHH
Confidence 468999999999999999985321111222221 1235799999999999999999999764 699999988776543
Q ss_pred hhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEecC
Q 005253 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (706)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytGD~ 175 (706)
.... ......+. +.....+..+..+.. .++.+....+||++|++++.+ +..+++|+||+
T Consensus 151 ~~~~--------~~~~~~~~-------~~~~~~~~~~~~~~~----g~~~~~~~~pgHT~g~~~~~~--~~~~vLfsGD~ 209 (270)
T 4eyb_A 151 QEGM--------VAAQHSLT-------FAANGWVEPATAPNF----GPLKVFYPGPGHTSDNITVGI--DGTDIAFGGCL 209 (270)
T ss_dssp GGTC--------CCCSEEEC-------BCTTSBBCGGGSTTC----TTEEEECCCSSSSSSCCEEEE--TTSSEEECTTT
T ss_pred hcCc--------cccccccC-------CCCceeecCceeeec----CceeEEecccccCCCCEEEEe--cCCcEEEEeCe
Confidence 2110 00000000 000001111111111 345555556999999987766 67889999997
Q ss_pred CC
Q 005253 176 NR 177 (706)
Q Consensus 176 ~~ 177 (706)
-.
T Consensus 210 l~ 211 (270)
T 4eyb_A 210 IK 211 (270)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 67
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=99.14 E-value=3.8e-11 Score=118.81 Aligned_cols=122 Identities=12% Similarity=-0.011 Sum_probs=86.2
Q ss_pred CCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhcCCCCCeeecchhhhh
Q 005253 14 FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (706)
Q Consensus 14 ~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~g~~~~VyaT~pt~~l 93 (706)
...+.+||+|+.++..+|||||... ...+..+... .+|++|++||. ||+||++.+.+.+ .++||++..+...
T Consensus 20 ~~~~~n~~li~~~~~~iliD~g~~~---~~~~~~l~~~-g~i~~ii~TH~--DH~gg~~~~~~~~--~a~v~~~~~~~~~ 91 (201)
T 2p97_A 20 RNIDFNGFAWIRPEGNILIDPVALS---NHDWKHLESL-GGVVWIVLTNS--DHVRSAKEIADQT--YTKIAGPVAEKEN 91 (201)
T ss_dssp TTEEEEEEEECCTTCCEEESCCCCC---HHHHHHHHHT-TCCSEEECSSG--GGCTTHHHHHHHS--CCEEEEEGGGTTS
T ss_pred CCcceeEEEEEeCCeeEEEECCCCc---HHHHHHHHhc-CCCCEEEECCc--hhhhhHHHHHHhc--CCEEEEcHhHhhh
Confidence 3347899999998899999999422 1222222222 28999999999 9999999998765 4899999877553
Q ss_pred chhhhHHHHHhhhccCCCCCCCHHhHHHhhcccEEecCCCEEEecccCCCEEEEEEeCCCCcCceEEEEEeCCeEEEEEe
Q 005253 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173 (706)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~aGH~lGs~~~~I~~~~~~IlytG 173 (706)
.+.. ....+..++.+ . .++++...++||++|++++.+. + +++|+|
T Consensus 92 ~~~~---------------------------~~~~~~~g~~~--~---~~~~~~~~p~gHt~g~~~~~~~--~-~~lf~G 136 (201)
T 2p97_A 92 FPIY---------------------------CDRWLSDGDEL--V---PGLKVMELQGSKTPGELALLLE--E-TTLITG 136 (201)
T ss_dssp CSSC---------------------------CSEEECTTCBS--S---TTEEEEEECSSSSTTEEEEEET--T-TEEEEC
T ss_pred hccc---------------------------CceecCCCCEE--c---ceEEEEECCCCCCCCcEEEEEc--C-CEEEEC
Confidence 2210 01334445543 2 2678877777999999998874 4 899999
Q ss_pred cCCCC
Q 005253 174 DYNRR 178 (706)
Q Consensus 174 D~~~~ 178 (706)
|+-..
T Consensus 137 D~~~~ 141 (201)
T 2p97_A 137 DLVRA 141 (201)
T ss_dssp SSEEB
T ss_pred ccccc
Confidence 98654
No 68
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.95 E-value=1.4e-10 Score=134.90 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=91.9
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCcccc--CCCCCccEEEcCCCchhhhccHHHHHHh---cCCCCCeeecchhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQ---LGLSAPVFSTEPVY 91 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~--~~~~~IdaIlLTH~H~DHiGgLp~L~~~---~g~~~~VyaT~pt~ 91 (706)
..|||+|+.++..||||||.........+..+. .....|++|++||.|.||+||++.+.+. ...+++||++..+.
T Consensus 122 ~~N~ylI~~~~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~ 201 (658)
T 2cfu_A 122 LANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFM 201 (658)
T ss_dssp SSCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHH
T ss_pred CeEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHH
Confidence 578999998889999999985321111122221 1246899999999999999999887641 01368999998875
Q ss_pred hhch--hh-----hH-H-HHHhhhc-cCCC-CCC--------CHHhHHHhhcccEEe-cCCCEEEecccCCCEEEEEEe-
Q 005253 92 RLGL--LT-----MY-D-QYLSRRQ-VSEF-DLF--------TLDDIDSAFQSVTRL-TYSQNYHLSGKGEGIVVAPHV- 150 (706)
Q Consensus 92 ~l~~--~~-----l~-d-~~~~~~~-~~~~-~~~--------~~~dv~~~~~~i~~v-~y~q~~~l~~~~~gl~it~~~- 150 (706)
+... .. +. . .+..... .... ..+ ....+. .......+ +.++.+.++ |.+++++.
T Consensus 202 ~~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~-~~~p~~~~~~dG~~l~lg----g~~l~vi~t 276 (658)
T 2cfu_A 202 EAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLS-LLAPTRLIEGEGEDLVLD----GVPFTFQNT 276 (658)
T ss_dssp HHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCC-CCCCSEEECTTEEEEEET----TEEEEEEEC
T ss_pred HHHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCcc-CCCCcEEEecCceEEEEC----CEEEEEEeC
Confidence 5321 00 00 0 0000000 0000 000 000000 00011234 356677775 77887765
Q ss_pred CCC-CcCceEEEEEeCCeEEEEEecCCCC
Q 005253 151 AGH-LLGGTVWKITKDGEDVIYAVDYNRR 178 (706)
Q Consensus 151 aGH-~lGs~~~~I~~~~~~IlytGD~~~~ 178 (706)
+|| ++|++++.+ +..+++|+||.-..
T Consensus 277 PGHhTpg~i~~~~--p~~~vLftGD~v~~ 303 (658)
T 2cfu_A 277 PGTESPAEMNIWL--PRQKALLMAENVVG 303 (658)
T ss_dssp TTSSSSSBEEEEE--TTTTEEECTTTSCS
T ss_pred CCCCCCCcEEEEE--CCCCEEEEeccccc
Confidence 798 999998887 66789999997653
No 69
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=98.39 E-value=2.1e-10 Score=132.98 Aligned_cols=155 Identities=14% Similarity=0.034 Sum_probs=90.0
Q ss_pred CCeEEEEEECCeEEEEeCCCCCCCCccCCccccC--CCCCccEEEcCCCchhhhccHHHHHHh---cCCCCCeeecchhh
Q 005253 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSK--VASTIDAVLLSHPDTLHLGALPYAMKQ---LGLSAPVFSTEPVY 91 (706)
Q Consensus 17 g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~--~~~~IdaIlLTH~H~DHiGgLp~L~~~---~g~~~~VyaT~pt~ 91 (706)
..|||+|+.++..||||||.........+..+.. ....|++|++||.|.||+||+..+.+. ....++||++..+.
T Consensus 132 ~~N~~lI~~~~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~ 211 (668)
T 2yhe_A 132 PANMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFM 211 (668)
Confidence 3689999988899999999864322223333332 246799999999999999999998752 01368999998863
Q ss_pred h--hchhhhH-HHHHhhhc--cC-CCC-----CCC--------H-HhHHHhhcccEEecCCCEEEecccCCCEEEEEEe-
Q 005253 92 R--LGLLTMY-DQYLSRRQ--VS-EFD-----LFT--------L-DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV- 150 (706)
Q Consensus 92 ~--l~~~~l~-d~~~~~~~--~~-~~~-----~~~--------~-~dv~~~~~~i~~v~y~q~~~l~~~~~gl~it~~~- 150 (706)
+ +.+.... .....+.. .+ .++ .+. . ..+.........++.++.+.++ |.+++++.
T Consensus 212 e~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~dg~~l~lg----g~~l~vi~t 287 (668)
T 2yhe_A 212 EHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTTATNATNTLVAPNVLIEKPYERHTVD----GVELEFQLT 287 (668)
Confidence 2 1111000 00000000 00 000 000 0 0000000011122345667774 66776654
Q ss_pred CC-CCcCceEEEEEeCCeEEEEEecCCC
Q 005253 151 AG-HLLGGTVWKITKDGEDVIYAVDYNR 177 (706)
Q Consensus 151 aG-H~lGs~~~~I~~~~~~IlytGD~~~ 177 (706)
+| |++|++++.+ +..+++|+||.-.
T Consensus 288 PG~Htpg~i~~~~--p~~~vLftGD~~~ 313 (668)
T 2yhe_A 288 LGSEAPSDMNIYL--PQFKVLNTADNAP 313 (668)
Confidence 56 9999988877 5678999999754
No 70
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=98.85 E-value=2e-09 Score=112.53 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=65.2
Q ss_pred eEEEEEeec-------CCCCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHH
Q 005253 4 SVQVTPLSG-------VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (706)
Q Consensus 4 ~m~~t~LgG-------a~~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~ 76 (706)
++++|.|.- .....++|++|+.++..||||||..... ...+..++..+.+||+|++||.|.||+||++.+.+
T Consensus 12 ~~~it~l~dn~~~~~~~~~~~g~s~li~~~~~~iLiD~G~~~~~-~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~ 90 (284)
T 2p4z_A 12 SVEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENF-IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLE 90 (284)
T ss_dssp CCEEEEEECSBCCSTTCCBCSSCEEEEEETTEEEEECCCSSTHH-HHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHH
T ss_pred CEEEEEEEeCCCCCcCcccCCEEEEEEEECCeEEEEeCCCCHHH-HHHHHHcCCChhhCCEEEECCCCchhhccHHHHHH
Confidence 578888742 1223688999999999999999974210 12233444556789999999999999999999887
Q ss_pred hcCCCCCeeecchhhh
Q 005253 77 QLGLSAPVFSTEPVYR 92 (706)
Q Consensus 77 ~~g~~~~VyaT~pt~~ 92 (706)
.++ +++||++..+.+
T Consensus 91 ~~~-~~~v~~~~~~~~ 105 (284)
T 2p4z_A 91 RNP-EVKIYTHKEILN 105 (284)
T ss_dssp HCT-TCEEEEEGGGGS
T ss_pred HcC-CCceecCHHHHH
Confidence 543 689999987754
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.20 E-value=4.6e-07 Score=93.42 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=54.6
Q ss_pred EEEEEeecCC------CCCCeEEEEEECCeEEEEeCCCCCCCCccCCccccCCCCCccEEEcCCCchhhhccHHHHHHhc
Q 005253 5 VQVTPLSGVF------NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (706)
Q Consensus 5 m~~t~LgGa~------~~g~sc~LL~~~~~~ILiDcG~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiGgLp~L~~~~ 78 (706)
|++.+|.--. .+-+.|+||+. ||||||..... ...+..++..+. ++|+|||.|.||+||++.+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~G~s~lie~----iLiD~G~~~~l-~~~l~~~gi~~~--~~IvlTH~H~DH~ggl~~l---- 81 (267)
T 3h3e_A 13 MRIHVLCDDSSQNGFESEHGFSVLVDS----VLFDTGKSDVF-LKNARKLGIDLP--KDVLISHGHYDHAGGLLYL---- 81 (267)
T ss_dssp EEEEEEECSCCCTTCCCCSSCEEEETT----EEECCCSSSHH-HHHHHHTTCCCC--SEEECSCSCHHHHGGGGGC----
T ss_pred eEEEEEecCCCCCCceeCcEeHHeeee----EEEECCCcHHH-HHHHHHCCcCcC--CEEEECCCChhhhCCHHHh----
Confidence 7888886322 33688999975 99999975310 122333343333 9999999999999999987
Q ss_pred CCCCCeeecchhhh
Q 005253 79 GLSAPVFSTEPVYR 92 (706)
Q Consensus 79 g~~~~VyaT~pt~~ 92 (706)
.+++||+++....
T Consensus 82 -~~~~v~~~~~~~~ 94 (267)
T 3h3e_A 82 -SGKRVWLRKEALD 94 (267)
T ss_dssp -CSCEEEEEGGGGS
T ss_pred -cCCEEEECHHHHH
Confidence 3799999877653
No 72
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=65.16 E-value=5 Score=43.58 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=31.6
Q ss_pred EeEeCCHHHHHHHHHHHhhcCCCceeecCCCceEEE
Q 005253 534 VLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 569 (706)
Q Consensus 534 ilv~g~~~~~~~l~~~~~~~~~~~v~~p~~~e~v~~ 569 (706)
+||||.+++++.|++....... ++++|..||++++
T Consensus 397 ~lvHge~~~~~~l~~~l~~~~~-~~~~p~~~~~~~~ 431 (431)
T 3iek_A 397 VLVHGEEEKLLALGKLLALRGQ-EVSLARFGEGVPV 431 (431)
T ss_dssp EEESSCHHHHHHHHHHHHHTTC-EEEECCTTCCEEC
T ss_pred EEECCCHHHHHHHHHHHHHhCC-cEEECCCCCEEeC
Confidence 8999999999999999887644 9999999999874
No 73
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=58.06 E-value=8 Score=44.38 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=36.6
Q ss_pred CCeeEEeecceEeEeCCHHHHHHHHHHHhhcCCCceeecCCCceEEE
Q 005253 523 KPSKVVSNELTVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 569 (706)
Q Consensus 523 ~P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~~~~~v~~p~~~e~v~~ 569 (706)
+|.++ |+|||.....++|++.++..++.++++|..||+|++
T Consensus 610 ~P~~v------i~vHGe~~~~~~la~~~~~~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 610 RPERI------ITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRL 650 (651)
T ss_dssp CCSEE------EEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred CCCEE------EEEcCCHHHHHHHHHHHHHhcCCeEEECCCCCEEEe
Confidence 48888 999999999999999987766789999999999975
No 74
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=57.34 E-value=9 Score=43.84 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCeeEEeecceEeEeCCHHHHHHHHHHHhhcCCCceeecCCCceEEE
Q 005253 523 KPSKVVSNELTVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 569 (706)
Q Consensus 523 ~P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~~~~~v~~p~~~e~v~~ 569 (706)
+|.++ |+|||.......|++.++..++.++++|..|+++++
T Consensus 599 ~P~~v------i~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 599 RPERV------FTEHGDEKACVDLASSVYKKLKIETRALTNLETVRL 639 (640)
T ss_dssp CCSEE------EEESSCHHHHHHHHHHHHHHHCCEEEECCTTCEEEC
T ss_pred CCCEE------EEECCCHHHHHHHHHHHHHHcCCeEEeCCCCCEEEe
Confidence 58888 999999999999999997666789999999999875
No 75
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.38 E-value=9.4 Score=43.63 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCeeEEeecceEeEeCCHHHHHHHHHHHhhcCCCceeecCCCceEEE
Q 005253 523 KPSKVVSNELTVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 569 (706)
Q Consensus 523 ~P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~~~~~v~~p~~~e~v~~ 569 (706)
+|.++ |+|||.......+++.++..++.++++|..||++++
T Consensus 595 ~Pk~v------i~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 595 KPEKI------LLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635 (636)
T ss_dssp CCSEE------EEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred CCCEE------EEECCCHHHHHHHHHHHHHHcCCcEEeCCCCCEEEe
Confidence 48888 899999999999999997766789999999999875
No 76
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=51.15 E-value=13 Score=40.36 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=34.7
Q ss_pred CeeEEeecceEeEeCCHHHHHHHHHHHhhcC------CCceeecCCCceEEEe
Q 005253 524 PSKVVSNELTVLVHGSAEATEHLKQHCLKHV------CPHVYTPQIEETIDVT 570 (706)
Q Consensus 524 P~K~v~~~~~ilv~g~~~~~~~l~~~~~~~~------~~~v~~p~~~e~v~~~ 570 (706)
|.++ ++|||.+++.+.|++.....+ +.++++|..||+|++.
T Consensus 411 p~~v------~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~ 457 (459)
T 2i7t_A 411 PPHV------ILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 457 (459)
T ss_dssp CSEE------EEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEE
T ss_pred CCeE------EEeCCCHHHHHHHHHHHHHHhccccccCceEEeCCCCCEEEEE
Confidence 7666 899999999999998776643 4789999999999875
No 77
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=49.22 E-value=34 Score=35.08 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=58.3
Q ss_pred CCCcEEeeccccccccCCCh---hhHH-HHHHHHHHHHhcC-CeEEEeecCc--hhHHHHHHHHHHHHHhcC----C---
Q 005253 192 VRPAVLITDAYNALHNQPPR---QQRE-MFQDAISKTLRAG-GNVLLPVDSA--GRVLELLLILEDYWAEHS----L--- 257 (706)
Q Consensus 192 ~~~d~LI~est~~~~~~~~r---~~~~-~l~~~I~~tl~~g-G~VLIP~~~~--GR~~ELl~~L~~~~~~~~----l--- 257 (706)
.++|+++||-. ...++. ..|. +.++.+.+.|..+ |...|=++.- ..++|.+..|...|.... +
T Consensus 159 ~~~D~ivcDig---eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lvr~P~SRn 235 (321)
T 3lkz_A 159 ECCDTLLCDIG---ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLVRNPLSRN 235 (321)
T ss_dssp CCCSEEEECCC---CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCT
T ss_pred CCCCEEEEECc---cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeEeCCCCCC
Confidence 35799999975 222222 2343 5677778888877 8888888876 777888888877775431 1
Q ss_pred -CccEEEEcccHHHHHHHHHHh
Q 005253 258 -NYPIYFLTYVSSSTIDYVKSF 278 (706)
Q Consensus 258 -~~pI~~~s~~a~~~~~~~~~~ 278 (706)
..-+|++|+.+.+++......
T Consensus 236 st~EmY~vsGa~gNIV~aVn~t 257 (321)
T 3lkz_A 236 STHEMYWVSRASGNVVHSVNMT 257 (321)
T ss_dssp TCCCEEEETTCCSCHHHHHHHH
T ss_pred CcceEEEEecCCCCeeeeHHHH
Confidence 346999999998887766543
No 78
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=37.29 E-value=71 Score=32.27 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCcEEeeccccccccCCChh-hHH-HHHHHHHHHHhcC-CeEEEeecC--chhHHHHHHHHHHHHHhcCC--------Cc
Q 005253 193 RPAVLITDAYNALHNQPPRQ-QRE-MFQDAISKTLRAG-GNVLLPVDS--AGRVLELLLILEDYWAEHSL--------NY 259 (706)
Q Consensus 193 ~~d~LI~est~~~~~~~~r~-~~~-~l~~~I~~tl~~g-G~VLIP~~~--~GR~~ELl~~L~~~~~~~~l--------~~ 259 (706)
.+|++++|..-. ....... .+. .+++.+.+.|+.| |+.++=+|. .+-..+++..|.++|..-.. ..
T Consensus 140 ~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~ 218 (277)
T 3evf_A 140 KCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLSRNSTH 218 (277)
T ss_dssp CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCC
T ss_pred CccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 579999986322 1111111 122 5678888999999 999999999 77889999999998875321 34
Q ss_pred cEEEEcccHHHHHHHHHHh
Q 005253 260 PIYFLTYVSSSTIDYVKSF 278 (706)
Q Consensus 260 pI~~~s~~a~~~~~~~~~~ 278 (706)
-+|+++....++..+....
T Consensus 219 E~Y~V~~~r~n~~~~v~~~ 237 (277)
T 3evf_A 219 EMYYVSGARSNVTFTVNQT 237 (277)
T ss_dssp CEEEESSCCCCHHHHHHHH
T ss_pred ceEEEEecCCCccchHHHH
Confidence 5899888777777666554
No 79
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=29.10 E-value=73 Score=32.28 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCCcEEeeccccccccCCChh-hHH-HHHHHHHHHHhcC--CeEEEeecC--chhHHHHHHHHHHHHHhcCC--------
Q 005253 192 VRPAVLITDAYNALHNQPPRQ-QRE-MFQDAISKTLRAG--GNVLLPVDS--AGRVLELLLILEDYWAEHSL-------- 257 (706)
Q Consensus 192 ~~~d~LI~est~~~~~~~~r~-~~~-~l~~~I~~tl~~g--G~VLIP~~~--~GR~~ELl~~L~~~~~~~~l-------- 257 (706)
.++|++++|..-. ...+... .+. .+++...++|+.| |+.++=+|. .+-..+++..|.++|..-..
T Consensus 155 ~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~ 233 (282)
T 3gcz_A 155 IPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVPLSRNS 233 (282)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTT
T ss_pred CCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcCCCccc
Confidence 4679999996433 2111111 233 5778888899999 999999999 78889999999999875321
Q ss_pred CccEEEEcccHHHHHHHHHHh
Q 005253 258 NYPIYFLTYVSSSTIDYVKSF 278 (706)
Q Consensus 258 ~~pI~~~s~~a~~~~~~~~~~ 278 (706)
..-+|+++....++..+...+
T Consensus 234 S~E~Y~V~~~r~n~~~~v~~~ 254 (282)
T 3gcz_A 234 THEMYWVSGTRTDVVGTVSNV 254 (282)
T ss_dssp CCCEEEETTCCCCSHHHHHHH
T ss_pred CcceeEEEecCCCccchHHHH
Confidence 344888887766666655543
No 80
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor, colony-stimulating factor, cytokine; NMR {Homo sapiens} SCOP: a.26.1.2
Probab=26.20 E-value=31 Score=29.58 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=26.8
Q ss_pred ceeeccCCCCCCCCcceeecccchhchhhHHH
Q 005253 612 MLSLLPISTPAPPHKSVLVGDLKMADLKPFLS 643 (706)
Q Consensus 612 ~~~l~p~~~~~~~~~~~~igd~rL~~lk~~L~ 643 (706)
.++.+|.++.++...+++|-|=-|-|||++|.
T Consensus 68 l~pcLPtat~~pt~~pI~I~~~dl~DFr~KL~ 99 (112)
T 1jli_A 68 LLPCLPLATAAPTRHPIHIKDGDWNEFRRKLT 99 (112)
T ss_dssp HGGGSCCTTSSCCSCCCCCCSSCHHHHHHHHH
T ss_pred ccccCCcCcCCCCCCCeecccCCHHHHHHHHH
Confidence 35678888877889999997777899999986
No 81
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=25.75 E-value=1.2e+02 Score=31.05 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred CCcEEeeccccccccCCCh-hhHH-HHHHHHHHHHhcC-CeEEEeecC--chhHHHHHHHHHHHHHhcCC--------Cc
Q 005253 193 RPAVLITDAYNALHNQPPR-QQRE-MFQDAISKTLRAG-GNVLLPVDS--AGRVLELLLILEDYWAEHSL--------NY 259 (706)
Q Consensus 193 ~~d~LI~est~~~~~~~~r-~~~~-~l~~~I~~tl~~g-G~VLIP~~~--~GR~~ELl~~L~~~~~~~~l--------~~ 259 (706)
.+|++++|..-. ...+.. ..+. .|++...+.|+.| |+.++=+|. .+-..+++..|.++|..-.. ..
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KPaSR~~S~ 225 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVPFSRNSTH 225 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCC
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeCCCCCCCh
Confidence 579999986322 111111 1233 6788888899999 999999999 88889999999999875321 35
Q ss_pred cEEEEcccHHHHHHHHHHhH
Q 005253 260 PIYFLTYVSSSTIDYVKSFL 279 (706)
Q Consensus 260 pI~~~s~~a~~~~~~~~~~~ 279 (706)
-+|+++....++..+...+.
T Consensus 226 E~Y~V~~~r~n~~~~v~~~~ 245 (300)
T 3eld_A 226 EMYYISGARNNITHMVNTTS 245 (300)
T ss_dssp CEEEESSCCCCHHHHHHHHH
T ss_pred HHeeeccCCCCcchhHHHHH
Confidence 69999888878877776653
No 82
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=23.03 E-value=54 Score=29.06 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCcEEeeccccccccCCChhhH------HHHHHHHHHHHhcCCeEEEeecCchhHHHHHHHHHHHHH
Q 005253 193 RPAVLITDAYNALHNQPPRQQR------EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253 (706)
Q Consensus 193 ~~d~LI~est~~~~~~~~r~~~------~~l~~~I~~tl~~gG~VLIP~~~~GR~~ELl~~L~~~~~ 253 (706)
..|+++++........+..... ..+++.+.+.++.||.+++-.+......+++..+..+|.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 154 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhh
Confidence 4688888654322111111111 366777888899999999988888888888888877653
No 83
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=20.11 E-value=38 Score=27.55 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=33.6
Q ss_pred Ccceeecccch---hchhhHHHhCCCc----eEEe-----CcEEEE--CC-eEEEEecCCCCCCCCCCCcccEEEEc
Q 005253 625 HKSVLVGDLKM---ADLKPFLSSKGIQ----VEFA-----GGALRC--GE-YVTIRKVGPAGQKGGGSGTQQIVIEG 686 (706)
Q Consensus 625 ~~~~~igd~rL---~~lk~~L~~~g~~----aeF~-----gG~Lv~--~~-~v~vrk~~~~~~~~~~~~~g~i~ieG 686 (706)
.++.-|=.+.- .+++++|.+.|+. .+.. ||.+++ +| .+|+||..+ .+|.|+-
T Consensus 6 G~~~~I~~i~~~~~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v~v~g~~iaLr~~~A----------~~I~V~~ 72 (83)
T 2lx9_A 6 DTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVLRKKDL----------ALLEVEA 72 (83)
T ss_dssp SCEEEEEECCSSSCHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEEECSSCEEEECHHHH----------HHSEEEE
T ss_pred CCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEEEECCEEEEcCHHHh----------CceEEEE
Confidence 34445545554 6899999999975 2221 344443 44 699999877 6787763
Done!